BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007847
(587 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225445088|ref|XP_002280407.1| PREDICTED: uncharacterized protein LOC100242436 [Vitis vinifera]
Length = 595
Score = 651 bits (1680), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/598 (59%), Positives = 422/598 (70%), Gaps = 28/598 (4%)
Query: 1 MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS 60
MY N T QA LA R+SS+P F K+ K+Q LP+G K NP + + S
Sbjct: 1 MYCNFTKCQAFPLAIRVSSQPICFRKFHTLKTQFLPIGFHPKPSQNPILVKCA----TLS 56
Query: 61 LGFS----------KSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGF 110
GF KST + +K+++ G +PR VS R+K VQ + +RGR F
Sbjct: 57 CGFGCKPHENSHSLKSTGILIELHHKALEKGTTRRPRSVSCGFRLKNVVQSYNFLRGRSF 116
Query: 111 SSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSS 170
SS SVRV S +R G+ L L + KE K KV++ + ++S WE SA+R E V++
Sbjct: 117 SSSYSVRVVGGSGAMRTGKALPWLTAKGAKERKSSDKVVNLKNNQSYWEKSAKRSEKVTT 176
Query: 171 ---SHSSWEESAKRLEKVTTTNIGRSLEESTKTF-SRTEEHRERVVDMSTGHRNVYAKNQ 226
S SSWEESA+R K ++ R L T + TE + +VDM +N Y +
Sbjct: 177 AETSRSSWEESAERFGKNHSS---RELLPKNGTLRAGTEGSKNIMVDMVESQKNGYMERD 233
Query: 227 GTAEEEGEEMEAVSDSKWNKRRNSFRR--DVKARTEKPEYQRWNRQENSGRTTWKEAAPS 284
+AEEE ME + D +W+K +N + DVK R E+PE +RWN+QEN GR TWKEA S
Sbjct: 234 ESAEEE---MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATES 290
Query: 285 TVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
T+PK+VGEG+YGVGPVLAALSA REFYALYVQEGL LS NNRKKKDKKG+EKVLK+AE
Sbjct: 291 TIPKIVGEGIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEK 350
Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
+G+SIK+ SKHDLNMVV NRPHQGLVLDASPLEMVKIKELDP+ + ++ LWVALDEVT
Sbjct: 351 IGLSIKDLSKHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVT 410
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DPQNLGAIIRSAYFFG SGVVLCAKNSAPLSGVVSKAS+GSLELMELR+C NMMQFL SS
Sbjct: 411 DPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSS 470
Query: 465 AENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
AENGW+VLGGSVS +A+PLNEI PG PTILVLGSEGTGLRPLVERSCT L+RIPGNIPV
Sbjct: 471 AENGWQVLGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIPVH 530
Query: 525 VTAGEIDDVDAD--GNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIED 580
VTAGE++DVD E FQSF+AVESLNVSVAAGVLLHHLVG+ NN + D
Sbjct: 531 VTAGEVEDVDTSEMDRRCLTEDFQSFLAVESLNVSVAAGVLLHHLVGNSYENNCLLGD 588
>gi|297738755|emb|CBI28000.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 619 bits (1597), Expect = e-174, Method: Compositional matrix adjust.
Identities = 343/596 (57%), Positives = 408/596 (68%), Gaps = 50/596 (8%)
Query: 1 MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS 60
MY N T QA LA R+SS+P F K+ K+Q LP+G K NP + + S
Sbjct: 1 MYCNFTKCQAFPLAIRVSSQPICFRKFHTLKTQFLPIGFHPKPSQNPILVKCA----TLS 56
Query: 61 LGFS----------KSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGF 110
GF KST + +K+++ G +PR VS R+K VQ + +RGR F
Sbjct: 57 CGFGCKPHENSHSLKSTGILIELHHKALEKGTTRRPRSVSCGFRLKNVVQSYNFLRGRSF 116
Query: 111 SSLSSVRVDERSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSS 170
SS SVRV S +R G+ L L + KE K KV++ + ++S WE SA+R E V++
Sbjct: 117 SSSYSVRVVGGSGAMRTGKALPWLTAKGAKERKSSDKVVNLKNNQSYWEKSAKRSEKVTT 176
Query: 171 ---SHSSWEESAKRLEKVTTTNIGRSLEESTKTF-SRTEEHRERVVDMSTGHRNVYAKNQ 226
S SSWEESA+R K ++ R L T + TE + +VDM +N Y +
Sbjct: 177 AETSRSSWEESAERFGKNHSS---RELLPKNGTLRAGTEGSKNIMVDMVESQKNGYMERD 233
Query: 227 GTAEEEGEEMEAVSDSKWNKRRNSFRR--DVKARTEKPEYQRWNRQENSGRTTWKEAAPS 284
+AEEE ME + D +W+K +N + DVK R E+PE +RWN+QEN GR TWKEA S
Sbjct: 234 ESAEEE---MEVIDDPRWDKIKNRYTETGDVKGRYERPELRRWNKQENWGRKTWKEATES 290
Query: 285 TVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
T+PK+VGEG+YGVGPVLAALSA REFYALYVQEGL LS NNRKKKDKKG+EKVLK+AE
Sbjct: 291 TIPKIVGEGIYGVGPVLAALSAGRREFYALYVQEGLDLSGNNRKKKDKKGFEKVLKLAEK 350
Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
+G+SIK+ SKHDLNMVV NRPHQGLVLDASPLEMVKIKELDP+ + ++ LWVALDEVT
Sbjct: 351 IGLSIKDLSKHDLNMVVDNRPHQGLVLDASPLEMVKIKELDPVLTEGEKGPLWVALDEVT 410
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DPQNLGAIIRSAYFFG SGVVLCAKNSAPLSGVVSKAS+GSLELMELR+C NMMQFL SS
Sbjct: 411 DPQNLGAIIRSAYFFGVSGVVLCAKNSAPLSGVVSKASAGSLELMELRFCKNMMQFLTSS 470
Query: 465 AENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
AENGW+VLGGSVS +A+PLNEI PG PTILVLGSEGTGLRPLVERSCT L+RIPGNIP
Sbjct: 471 AENGWQVLGGSVSPRAIPLNEISPGAPTILVLGSEGTGLRPLVERSCTQLIRIPGNIP-- 528
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIED 580
SF+AVESLNVSVAAGVLLHHLVG+ NN + D
Sbjct: 529 ----------------------SFLAVESLNVSVAAGVLLHHLVGNSYENNCLLGD 562
>gi|224143649|ref|XP_002325029.1| predicted protein [Populus trichocarpa]
gi|222866463|gb|EEF03594.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 610 bits (1572), Expect = e-172, Method: Compositional matrix adjust.
Identities = 350/607 (57%), Positives = 413/607 (68%), Gaps = 56/607 (9%)
Query: 1 MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS 60
MYSNL Q LATR+S +P K Q LP+G SK LNP F
Sbjct: 1 MYSNLAKGQLFPLATRVSLKPRCL------KPQFLPIGCHSKPSLNPLCAHF-------- 46
Query: 61 LGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDE 120
T S F +K+ ++ +P + ++ + FS S RVDE
Sbjct: 47 ------TTLSHGFGHKAHKVRNFVRPTKTNAEFQ--------------SFSRSFSQRVDE 86
Query: 121 RSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAK 180
S V+R G+ L L S KVKEAK L S ++S S S +RLE VS SSW S K
Sbjct: 87 GSGVVRVGKSLPWLNSKKVKEAKGLEIGASGKSSNSYRGESVKRLEKVSGD-SSWVNSRK 145
Query: 181 RLEKVTTTNIGRS-LEESTKTF-----SRTEEHR-ERVVDMSTGHRNV-----YAKNQGT 228
RLEK T G S EES K +TE E + + ++G N+ Y N+
Sbjct: 146 RLEKGTVAETGYSSWEESKKRLEEVAVGKTERSSWEDIAEAASGRENIHKPSGYGYNERE 205
Query: 229 AEEEG----EEMEAVSDSKWNKRRNSFRR--DVKARTEKPEYQRWNRQENSGRTTWKEAA 282
EG E++E V D +W+K +N FR V+ +TEKP++QRWNRQ+N GR TWKEA
Sbjct: 206 DGVEGGEAEEDLEVVDDPRWDKIKNRFRGRVGVRGQTEKPDFQRWNRQDNWGRKTWKEAT 265
Query: 283 PSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMA 342
TVPK+VGEG++GVGPVLAALS REFYALY+QEGL LS NNRK+KDKKG+EKVL+MA
Sbjct: 266 EFTVPKIVGEGVFGVGPVLAALSTGRREFYALYIQEGLDLSGNNRKRKDKKGFEKVLRMA 325
Query: 343 ENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDE 402
+ +G+S KE SKHDLNM+V NRPHQGLVLDASPLEMVKI+ELD + DE++ SLWVALDE
Sbjct: 326 KKIGLSTKEVSKHDLNMIVDNRPHQGLVLDASPLEMVKIQELDAVLPDEEKGSLWVALDE 385
Query: 403 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLV 462
VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS+GSLELMELRYC NMMQFLV
Sbjct: 386 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLV 445
Query: 463 SSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIP 522
SSAENGWRVLGGSVSSKAV L+E+ PGQPTILVLGSEGTGLRPLVERSCT LVRIPGNIP
Sbjct: 446 SSAENGWRVLGGSVSSKAVSLSEVLPGQPTILVLGSEGTGLRPLVERSCTQLVRIPGNIP 505
Query: 523 VDVTAGEIDDV-DADGN-HGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIED 580
VD T G D+V D + N S+ +F+SF+AVESLNVSVAAGVLLHHL+G+ N S I
Sbjct: 506 VDATVGGGDEVKDEEINLECSSAEFRSFLAVESLNVSVAAGVLLHHLIGNNNENRS-IGH 564
Query: 581 SSTATVD 587
+ST ++
Sbjct: 565 TSTVVLE 571
>gi|255546313|ref|XP_002514216.1| rRNA methylase, putative [Ricinus communis]
gi|223546672|gb|EEF48170.1| rRNA methylase, putative [Ricinus communis]
Length = 517
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 325/524 (62%), Positives = 389/524 (74%), Gaps = 30/524 (5%)
Query: 80 MGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRV-DERSPVLRAGRPLASLKSNK 138
M L + R + S +R + CC L+R R FSS S V ERS +R G+ L L S +
Sbjct: 1 MSNLARGRCILSSLR--SSASCCSLLRARSFSSSHSQSVAGERSNAVRDGKSLPWLSSRR 58
Query: 139 VKEAKRLGKVISA-EASRSSWEASAERLEDVSSSHSSWEESAKRLEKV-----------T 186
VKE K L K +SA SSW+ S +RLE +++ SSWEESAKRLEK
Sbjct: 59 VKELKGLEKRVSAYNNGPSSWKKSDKRLEKIANG-SSWEESAKRLEKDADSVKNLEKEGV 117
Query: 187 TTNIGRSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTA----EEEGE-EMEAVSD 241
T + S EES + E +R R+V N+ A EEEGE E++ D
Sbjct: 118 TRSARSSWEESVEPA--LESNRNRMVGRVKDREYDCGFNETNASVDKEEEGEGELDVSED 175
Query: 242 SKWNKRRNSFR--RDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGP 299
+W+K +N F + K RTEK E+ RWN+QEN GR TW+EA ST+PKMVG G+YGVGP
Sbjct: 176 PRWDKIKNRFNGMTNAKGRTEKTEFNRWNKQENWGRKTWREATESTLPKMVGGGVYGVGP 235
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
VLAALSA REFYALYVQEGL L+ NN+KKKDKKG+EKVLKMA+ +G+SI+ SKHDLNM
Sbjct: 236 VLAALSAARREFYALYVQEGLDLT-NNKKKKDKKGFEKVLKMAQRIGLSIRRVSKHDLNM 294
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+V NRPHQGLVLDASPLEMVKI ELDP+S+++++ SLWVALDEVTDPQNLGAIIRSAYFF
Sbjct: 295 IVDNRPHQGLVLDASPLEMVKIMELDPVSSEDEKGSLWVALDEVTDPQNLGAIIRSAYFF 354
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
GA+G+VLCAKNSAPLSGVVSKAS+GSLE+MELRYC NMMQFLVSSA+NGWRVLGGSV+S
Sbjct: 355 GAAGIVLCAKNSAPLSGVVSKASAGSLEIMELRYCRNMMQFLVSSADNGWRVLGGSVASM 414
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD--G 537
AVPLNE+ PG+PTILVLGSEGTGLRPLVERSCT LVRIPGNIP+DVT G D V+++
Sbjct: 415 AVPLNEVVPGEPTILVLGSEGTGLRPLVERSCTQLVRIPGNIPMDVTMGGNDVVESEEIN 474
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG-HQVSNNSHIED 580
S+E F+SF+AVESLNVSVAAGVLLHHL+G +Q++ NS I+D
Sbjct: 475 LQHSSEGFRSFLAVESLNVSVAAGVLLHHLIGSNQMAKNS-IDD 517
>gi|356527755|ref|XP_003532473.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase slr0955-like
[Glycine max]
Length = 557
Score = 535 bits (1378), Expect = e-149, Method: Compositional matrix adjust.
Identities = 312/590 (52%), Positives = 387/590 (65%), Gaps = 66/590 (11%)
Query: 1 MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS 60
MY+N++ +QA LA +ISS+P F + K SLP+ S RN +++
Sbjct: 1 MYTNISKAQAFPLAAKISSQPKCFTSPLALKFPSLPLAS-------------HRNPMLKT 47
Query: 61 LGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDE 120
S F +++MG L P + ++ A + C S+ ++
Sbjct: 48 ---PTSHKFG------TLEMGKLANPHG----LMLQIARRYC-----------SARSTEK 83
Query: 121 RSPVLRAGRPLASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAK 180
+ P L +N+VKE GKV+ + + E SS SSWE+S +
Sbjct: 84 QLPWLEV--------ANEVKEE---GKVMQKAKTTRISGSFPEGSAKKMSSKSSWEQSIE 132
Query: 181 RLEKVTTTNIGRS-LEESTKTFSR--------TEEHRERVVDMSTGHRNVYAKNQGTAEE 231
RL+K T + S L + FS ++E + +V+ R+ Y K ++
Sbjct: 133 RLDKSHKTEVPESKLRSAAAKFSMKGGVSATASKERKGGLVEKVGQLRSDYGKRYVKFDD 192
Query: 232 EGEE------MEAVSDSKWNKRRNSFRRDVKART--EKPEYQRWNRQENSGRTTWKEAAP 283
EE E + D +W +N F+ V A+ E+PE +RWN+Q+N GR T KEA+
Sbjct: 193 NDEEGVDDEMEEEMDDPRWYNIKNKFKGMVGAKVGMERPEVRRWNKQDNWGRKTLKEASE 252
Query: 284 STVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE 343
STVPK+VGEG+YGVGPVLAALSA REFYALYVQEGL LS NNRKKKDKKG+E+VLK+AE
Sbjct: 253 STVPKIVGEGIYGVGPVLAALSADRREFYALYVQEGLDLSGNNRKKKDKKGFERVLKIAE 312
Query: 344 NMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEV 403
+G+S+KE SKHDLNMV NRPHQGLVLDAS LEMVK+ ELDP+S DE + SLWVALDEV
Sbjct: 313 KLGLSVKEASKHDLNMVADNRPHQGLVLDASQLEMVKVNELDPVSIDEGKGSLWVALDEV 372
Query: 404 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS+GSLELMELRYC NMMQFLVS
Sbjct: 373 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASAGSLELMELRYCKNMMQFLVS 432
Query: 464 SAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
SAENGWRVLGGSVSSKA+ L+E+ PG PTILVLGSEGTGLRPLVERSCT LVRIPGNI
Sbjct: 433 SAENGWRVLGGSVSSKAIALDEVVPGPPTILVLGSEGTGLRPLVERSCTQLVRIPGNIHF 492
Query: 524 DVTAGEIDDVDADGN-HGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
D + E+D + N S ++F SF+AVESLNVSVAAGVL+HHL+G ++
Sbjct: 493 DSSTSELDGESSGLNSQSSGKEFLSFLAVESLNVSVAAGVLIHHLIGKKL 542
>gi|449435780|ref|XP_004135672.1| PREDICTED: uncharacterized tRNA/rRNA methyltransferase
MAV_0574-like [Cucumis sativus]
Length = 529
Score = 518 bits (1335), Expect = e-144, Method: Compositional matrix adjust.
Identities = 278/445 (62%), Positives = 336/445 (75%), Gaps = 33/445 (7%)
Query: 135 KSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAKRLEKVTTTNIGRSL 194
+S++ + KR GK A+RS+WE SAE+ A+R + +
Sbjct: 110 RSSRDEPEKRYGKEPIGSANRSTWEVSAEKF-------------ARR-----SIELADEK 151
Query: 195 EESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRD 254
ES +T EE ++ ++ R Y + + EA++D +W+K ++ FR
Sbjct: 152 RESRRTRMDNEEQKDDDIE----RRGSYEEVEDEE------TEAIADPRWDKIKSRFRGM 201
Query: 255 VKAR--TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFY 312
V R TE+PE+QRWN+QE+ GR TWKEA+ ST+PKM+GEG+YGVGPVLAALSA REFY
Sbjct: 202 VDERGATERPEFQRWNKQESWGRKTWKEASESTLPKMIGEGVYGVGPVLAALSAGRREFY 261
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
ALYVQEG+ L++NN+KKKDKKG+EKVLK+AE ++IKE SKHDLNM+ NRPHQGLVLD
Sbjct: 262 ALYVQEGIDLNNNNKKKKDKKGFEKVLKLAEKNALTIKEISKHDLNMISDNRPHQGLVLD 321
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
ASPLEMVKIKELDP+S ++D+ SLW+ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA
Sbjct: 322 ASPLEMVKIKELDPVSLEDDKGSLWLALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 381
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
PLSGVVSKAS+GSLELMELRYC NMMQFL SSAENGWRVLG SVSSK++ L E+ PG PT
Sbjct: 382 PLSGVVSKASAGSLELMELRYCKNMMQFLTSSAENGWRVLGASVSSKSIDLKEVLPGAPT 441
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVD-ADGNHGSAEQFQSFMAV 551
ILVLGSEGTGLRPLVERSC+ LVRIPGNIPVDVT +D++ DG S ++F+SFMAV
Sbjct: 442 ILVLGSEGTGLRPLVERSCSQLVRIPGNIPVDVTIDTENDIETTDGR--SVDEFRSFMAV 499
Query: 552 ESLNVSVAAGVLLHHLVGHQVSNNS 576
ESLNVSVAAGV +HHLVG+ N S
Sbjct: 500 ESLNVSVAAGVFVHHLVGNSYKNES 524
>gi|449485822|ref|XP_004157283.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized tRNA/rRNA
methyltransferase MAV_0574-like [Cucumis sativus]
Length = 529
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 277/445 (62%), Positives = 335/445 (75%), Gaps = 33/445 (7%)
Query: 135 KSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAKRLEKVTTTNIGRSL 194
+S++ + KR GK A+RS+WE SAE+ A+R + +
Sbjct: 110 RSSRDEPEKRYGKQPIGSANRSTWEVSAEKF-------------ARR-----SIELADEK 151
Query: 195 EESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRD 254
ES +T EE ++ ++ R Y + + EA++D +W+K ++ FR
Sbjct: 152 RESRRTRMDNEEQKDDDIE----RRGSYEEVEDEE------TEAIADPRWDKIKSRFRGM 201
Query: 255 VKAR--TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFY 312
V R TE+PE+QRWN+QE+ GR TWKEA+ ST+PKM+GEG+YGVGPVLAALSA REFY
Sbjct: 202 VDERGATERPEFQRWNKQESWGRKTWKEASESTLPKMIGEGVYGVGPVLAALSAGRREFY 261
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
ALYVQEG+ L++NN+KKKDKKG+EKVLK+AE ++IKE SKHDLNM+ NRPHQGLVLD
Sbjct: 262 ALYVQEGIDLNNNNKKKKDKKGFEKVLKLAEKNALTIKEISKHDLNMISDNRPHQGLVLD 321
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
ASPLEMVKI ELDP+S ++D+ SLW+ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA
Sbjct: 322 ASPLEMVKIXELDPVSLEDDKGSLWLALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 381
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
PLSGVVSKAS+GSLELMELRYC NMMQFL SSAENGWRVLG SVSSK++ L E+ PG PT
Sbjct: 382 PLSGVVSKASAGSLELMELRYCKNMMQFLTSSAENGWRVLGASVSSKSIDLKEVLPGAPT 441
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVD-ADGNHGSAEQFQSFMAV 551
ILVLGSEGTGLRPLVERSC+ LVRIPGNIPVDVT +D++ DG S ++F+SFMAV
Sbjct: 442 ILVLGSEGTGLRPLVERSCSQLVRIPGNIPVDVTIDTENDIETTDGR--SVDEFRSFMAV 499
Query: 552 ESLNVSVAAGVLLHHLVGHQVSNNS 576
ESLNVSVAAGV +HHLVG+ N S
Sbjct: 500 ESLNVSVAAGVFVHHLVGNSYKNES 524
>gi|357520841|ref|XP_003630709.1| tRNA/rRNA methyltransferase, putative [Medicago truncatula]
gi|355524731|gb|AET05185.1| tRNA/rRNA methyltransferase, putative [Medicago truncatula]
Length = 572
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 311/610 (50%), Positives = 379/610 (62%), Gaps = 91/610 (14%)
Query: 1 MYSNLTSSQALSLATRISSEPTRFFKYIYTKSQSLPMGSVSKRPLNPSFISFSRNGHIRS 60
MY+N++ +QA L ++ISS+P F Q P+ S +K
Sbjct: 1 MYTNISKTQAFPLVSKISSQPKCFNSLSTLNIQFSPLSSHNKS----------------- 43
Query: 61 LGFSKSTNFSLVFCNKSMQMGVLEKPRRVSSVMRVKCAVQCCDLIRGRGFSSLSSVRVDE 120
+F N + +LE RR CA + + + L + V E
Sbjct: 44 -----------IFTNPRYGL-MLEIARRY-------CAARSVE----KQLPWLETNEVKE 80
Query: 121 RSPVLRAGRP--LASLKSNKVKEAKRLGKVISAEASRSSWEASAERLE--DVSSSHSSWE 176
V RA R +S++ + VK+ + +SSWE S +RLE VS
Sbjct: 81 DKRVERAKRNHVRSSIQDDSVKKG----------SVKSSWEQSVDRLEIPAVSEFKPRSR 130
Query: 177 ESA--------KRLEKVTTTNIGRSLEESTKTFSRTEEHRERVVDMST------------ 216
ESA R K + GR E SR + ++ + +T
Sbjct: 131 ESAFSAKGGVSNRERKNGLADNGR--EPRNDRGSRYVKFDDKRIASNTRFGKYGKFDDKR 188
Query: 217 ----GHRNVYAKNQGTAEEE------GEEMEAVSDSKWNKRRNSFRRDVKAR--TEKPEY 264
H + Y+K EE E E V D +W+ +N F+ V R EK EY
Sbjct: 189 SANNTHADRYSKVDDNVEERVDDEMEDEVEEGVDDPRWDNIKNRFKGVVGGRGGLEKLEY 248
Query: 265 QRWNRQENSG-RTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLS 323
+RW+R EN G R TW+EA STVPK+VGEG+YGVGPVLAALSA REFYALYVQ+GL LS
Sbjct: 249 RRWDRNENWGSRKTWQEATESTVPKIVGEGIYGVGPVLAALSAGRREFYALYVQQGLDLS 308
Query: 324 SNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE 383
SNNRKKKDKKG+E+VLKMAE + +SIKE SKHDLNMV NRPHQGLVLDASPLEMVKI+E
Sbjct: 309 SNNRKKKDKKGFERVLKMAEKLNLSIKEESKHDLNMVTDNRPHQGLVLDASPLEMVKIQE 368
Query: 384 LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
L+P+S +E + SLWVALDEVTDPQNLGAIIRS+YFFGA+G+VLCAKNSAPLSGVVSKAS+
Sbjct: 369 LEPVSTEEGKGSLWVALDEVTDPQNLGAIIRSSYFFGAAGIVLCAKNSAPLSGVVSKASA 428
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
GSLELMELRYC NMMQFLVSSAENGWRVLGGSVSSKA+ LNEI PG PTILVLGSEGTGL
Sbjct: 429 GSLELMELRYCKNMMQFLVSSAENGWRVLGGSVSSKAISLNEIEPGPPTILVLGSEGTGL 488
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG--NHGSAEQFQSFMAVESLNVSVAAG 561
RPLVERSCT LV+I GNIP D++ G+ + ++ G ++F SF+AVESLNVSVA G
Sbjct: 489 RPLVERSCTQLVKIAGNIPSDLSTGDELEGESTGLNRESPGKEFLSFLAVESLNVSVATG 548
Query: 562 VLLHHLVGHQ 571
VLLHHL+G +
Sbjct: 549 VLLHHLIGKR 558
>gi|3687231|gb|AAC62129.1| hypothetical protein [Arabidopsis thaliana]
Length = 577
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 241/349 (69%), Positives = 291/349 (83%), Gaps = 11/349 (3%)
Query: 229 AEEEGEEM--EAVSDSKWNKRRNSFRR-DVKAR-TEKPEYQRWNRQENSGRTTWKEAAPS 284
A E+G+ + E +++W++ +N F R DV+ + + Y+ WNRQE+ GR TW+EA S
Sbjct: 235 APEDGDGIVEEEPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATES 294
Query: 285 TVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
+VP++ GE +YGV PVLAALS REFYALYVQEGL LSSNNRKKKDKKG+E+VLK++E
Sbjct: 295 SVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEK 354
Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
+G++IKETSKHDLNMV NRPHQGLVLDASPLE+VK+KELDPIS++E++ SLWVALDEVT
Sbjct: 355 LGLNIKETSKHDLNMVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVT 414
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DPQNLGAIIRSAYFFGA+GVV+CAKNSAPLS VVSKAS+GSLE+MELRYC NMMQFL +S
Sbjct: 415 DPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEAS 474
Query: 465 AENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
AENGWRV+GGSVS KAV LNE+ PG PTILVLG+EGTGLRPLVERSCT LVRI GN+P +
Sbjct: 475 AENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNE 534
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V E DD + +G F+SF+AVESLNVSVAAG+ LHHL+G++ S
Sbjct: 535 VAVTESDDAEGEG-------FRSFLAVESLNVSVAAGLFLHHLIGNKAS 576
>gi|30680811|ref|NP_849992.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis
thaliana]
gi|20336661|gb|AAM19346.1|AF499436_1 hypothetical protein [Arabidopsis thaliana]
gi|17065308|gb|AAL32808.1| Unknown protein [Arabidopsis thaliana]
gi|330251842|gb|AEC06936.1| tRNA/rRNA methyltransferase (SpoU)-like protein [Arabidopsis
thaliana]
Length = 589
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 241/349 (69%), Positives = 291/349 (83%), Gaps = 11/349 (3%)
Query: 229 AEEEGEEM--EAVSDSKWNKRRNSFRR-DVKAR-TEKPEYQRWNRQENSGRTTWKEAAPS 284
A E+G+ + E +++W++ +N F R DV+ + + Y+ WNRQE+ GR TW+EA S
Sbjct: 247 APEDGDGIVEEEPDNTRWSEIKNRFNRYDVRDQGRDDAAYRNWNRQESWGRKTWQEATES 306
Query: 285 TVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
+VP++ GE +YGV PVLAALS REFYALYVQEGL LSSNNRKKKDKKG+E+VLK++E
Sbjct: 307 SVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFERVLKISEK 366
Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
+G++IKETSKHDLNMV NRPHQGLVLDASPLE+VK+KELDPIS++E++ SLWVALDEVT
Sbjct: 367 LGLNIKETSKHDLNMVADNRPHQGLVLDASPLELVKVKELDPISSEEEKYSLWVALDEVT 426
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DPQNLGAIIRSAYFFGA+GVV+CAKNSAPLS VVSKAS+GSLE+MELRYC NMMQFL +S
Sbjct: 427 DPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLEAS 486
Query: 465 AENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
AENGWRV+GGSVS KAV LNE+ PG PTILVLG+EGTGLRPLVERSCT LVRI GN+P +
Sbjct: 487 AENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTDLVRISGNMPNE 546
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V E DD + +G F+SF+AVESLNVSVAAG+ LHHL+G++ S
Sbjct: 547 VAVTESDDAEGEG-------FRSFLAVESLNVSVAAGLFLHHLIGNKAS 588
>gi|297836270|ref|XP_002886017.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
lyrata]
gi|297331857|gb|EFH62276.1| hypothetical protein ARALYDRAFT_480484 [Arabidopsis lyrata subsp.
lyrata]
Length = 577
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 242/351 (68%), Positives = 292/351 (83%), Gaps = 9/351 (2%)
Query: 225 NQGTAEEEGEEMEAVSDSKWNKRRNSFRR-DVKART-EKPEYQRWNRQENSGRTTWKEAA 282
N G + +G E +++W++ +N F R DV+ + + Y+ WNRQE+ GR TW+EA
Sbjct: 233 NHGRDDGDGIIEEEPDNTRWSEIKNRFNRYDVRDQGHDNAAYRNWNRQESWGRKTWQEAT 292
Query: 283 PSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMA 342
S+VP++ GE +YGV PVLAALS REFYALYVQEGL LSSNNRKKKDKKG+EKVLK++
Sbjct: 293 ESSVPRLEGEVVYGVSPVLAALSVGRREFYALYVQEGLDLSSNNRKKKDKKGFEKVLKIS 352
Query: 343 ENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDE 402
E +G+++KETSKHDLNMV NRPHQGLVLDASPLE+VK+KELDPIS++E+++SLWVALDE
Sbjct: 353 EKLGLNLKETSKHDLNMVADNRPHQGLVLDASPLELVKVKELDPISSEEEKSSLWVALDE 412
Query: 403 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLV 462
VTDPQNLGAIIRSAYFFGA+GVV+CAKNSAPLS VVSKAS+GSLE+MELRYC NMMQFL
Sbjct: 413 VTDPQNLGAIIRSAYFFGATGVVVCAKNSAPLSAVVSKASAGSLEVMELRYCKNMMQFLE 472
Query: 463 SSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIP 522
+SAENGWRV+GGSVS KAV LNE+ PG PTILVLG+EGTGLRPLVERSCT LVRI GN+P
Sbjct: 473 ASAENGWRVVGGSVSPKAVALNEVLPGSPTILVLGNEGTGLRPLVERSCTELVRISGNMP 532
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
DV+ E DD + +G F+SF+AVESLNVSVAAG+ LHHL+G++ S
Sbjct: 533 NDVSVTESDDAEGEG-------FRSFLAVESLNVSVAAGLFLHHLIGNKAS 576
>gi|125527657|gb|EAY75771.1| hypothetical protein OsI_03687 [Oryza sativa Indica Group]
Length = 517
Score = 468 bits (1205), Expect = e-129, Method: Compositional matrix adjust.
Identities = 252/427 (59%), Positives = 305/427 (71%), Gaps = 52/427 (12%)
Query: 173 SSWEESAKRLEKVTTTNIGRSLEESTKTFSRTEE--HRERVVDMSTGHRNVYAKNQGTAE 230
SSWE SA+ K FSR ++ E + D +G +
Sbjct: 117 SSWETSAE------------------KFFSRGDQSPRGEVLTDRGSGREII--------- 149
Query: 231 EEGEEMEAVSDSKWNKRRNSFRRDVK------------ARTEKPEYQRWNRQENSGRTTW 278
E E+ ++ + KW + ++++RR V R +KPE ++W+RQEN GR TW
Sbjct: 150 REEEDNGSIDNPKWGRIKDNYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTW 209
Query: 279 KEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV 338
KEA STVPKMVG+G+YGVGPVLAAL A+ REFYALY+QEG+ LS +N+KKKDKKG EKV
Sbjct: 210 KEAGESTVPKMVGQGVYGVGPVLAALMAERREFYALYIQEGMDLSVSNKKKKDKKGIEKV 269
Query: 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWV 398
L++AE +G+ + E SKHDLNMVV NRPHQGLVLDASPLEMV KEL+P+ D+ +A +W+
Sbjct: 270 LQLAERIGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWI 329
Query: 399 ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMM 458
ALDEV DPQNLGAIIRSAYFFGA GVVLCAKNSAPLSGVVSKAS+GSLEL+EL C NMM
Sbjct: 330 ALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMM 389
Query: 459 QFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
QFL SSAENGWRVLGG+V+SKA+PL+E+ PG+PTILVLGSEGTGLRPLVERSCTHLVRIP
Sbjct: 390 QFLSSSAENGWRVLGGTVASKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIP 449
Query: 519 GNIPVDVTAGEIDDVDADG-----NHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
GN+ D D DG N+ + +SF+AVESLNVSVAAGVLL+HL G +
Sbjct: 450 GNVDGSFVGA---DTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLAG---T 503
Query: 574 NNSHIED 580
N S + D
Sbjct: 504 NASPVSD 510
>gi|242058639|ref|XP_002458465.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
gi|241930440|gb|EES03585.1| hypothetical protein SORBIDRAFT_03g034180 [Sorghum bicolor]
Length = 552
Score = 468 bits (1203), Expect = e-129, Method: Compositional matrix adjust.
Identities = 247/433 (57%), Positives = 311/433 (71%), Gaps = 30/433 (6%)
Query: 156 SSWEASAERLEDVSSSHSSWEESAKRL-EKVTTTNIGRSLEESTKTFSRTEEHR------ 208
SSWE+SAE+ ++ E S R+ +KV + ++ + E R
Sbjct: 112 SSWESSAEKFFSRDDQYARREVSGVRMKDKVPIKD-----DDDNEAIGNPERGRIKGRYQ 166
Query: 209 ERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDV------------K 256
R V + NV + Q E+ +E E + + KW K ++ ++R V +
Sbjct: 167 RREVPGNRMPNNVAIREQ----EDDDENEPIDNPKWGKIKDRYQRVVGRDGGSRGERFRR 222
Query: 257 ARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYV 316
R +KP+ ++WN+QEN GR T KEA S+VP +VG+G+YGVGPVLAAL A+ REFYALY+
Sbjct: 223 ERFDKPDVRQWNKQENWGRKTGKEAGESSVPNIVGQGVYGVGPVLAALMARRREFYALYI 282
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPL 376
QE + LS NN+K+KDKK EKVL+MAE +G+ + ETSKHDLNMVV NRPHQG+VLDASPL
Sbjct: 283 QESMDLSGNNKKRKDKKAVEKVLRMAEEIGLKVIETSKHDLNMVVDNRPHQGVVLDASPL 342
Query: 377 EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG 436
EMV IKELDP+ + +A +W+ALDE+ DPQNLGAIIRSAY+FGA GV+LCAKNSAPLSG
Sbjct: 343 EMVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVILCAKNSAPLSG 402
Query: 437 VVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVL 496
VVSKAS+GSLEL+EL C NMMQFL SSAENGWRVLGG++++KAVPL+E+ G PTILV+
Sbjct: 403 VVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSEVEIGVPTILVM 462
Query: 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVT-AGEIDDVDADGNHGSAEQ-FQSFMAVESL 554
GSEGTGLRPLVERSCTHLVRIPGN+ V V AG D +G+ S+ Q +SF+AVESL
Sbjct: 463 GSEGTGLRPLVERSCTHLVRIPGNVDVFVEGAGADADAGEEGDSSSSNQDLRSFLAVESL 522
Query: 555 NVSVAAGVLLHHL 567
NVSVAAGVLL+HL
Sbjct: 523 NVSVAAGVLLYHL 535
>gi|239047833|ref|NP_001141631.2| hypothetical protein [Zea mays]
gi|238908839|gb|ACF86752.2| unknown [Zea mays]
gi|413952474|gb|AFW85123.1| hypothetical protein ZEAMMB73_762500 [Zea mays]
Length = 549
Score = 466 bits (1200), Expect = e-128, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 310/430 (72%), Gaps = 28/430 (6%)
Query: 156 SSWEASAERLEDVSSSHSSWEESAKRL-EKVTTT-----NIGRSLEESTKTFSRTEEHRE 209
SSWE+SAE+ ++ E S R+ +KV N G E + R ++
Sbjct: 113 SSWESSAEKFFSRDDQYTRREVSGVRMSDKVAIKDDDDENEGNGNPERGRIKGR---YQR 169
Query: 210 RVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRR------------DVKA 257
R V +G+R N+ E+ +E E + + KW + ++ ++R +
Sbjct: 170 REV---SGNR---MPNKVAIREQEDEDEPIDNPKWGRIKDRYQRIGGRDGGSRDERFRRE 223
Query: 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQ 317
R +KP+ ++WN+QEN GR T KEA S+VPKMVG+G+YGVGPVLAAL A+ REFYALY+Q
Sbjct: 224 RFDKPDVRQWNKQENWGRNTGKEAGESSVPKMVGQGVYGVGPVLAALMARRREFYALYIQ 283
Query: 318 EGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLE 377
E + LS NN+K+KDKK EKVL+MAE +G+++ ET KHDLNMVV NRPHQG+VLDASPLE
Sbjct: 284 ESMDLSGNNKKRKDKKAVEKVLRMAEEIGLNVIETPKHDLNMVVDNRPHQGVVLDASPLE 343
Query: 378 MVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGV 437
MV IKELDP+ + +A +W+ALDE+ DPQNLGAIIRSAY+FGA GVVLCAKNSAPLSGV
Sbjct: 344 MVNIKELDPVRVEGGKAPVWIALDEIMDPQNLGAIIRSAYYFGAQGVVLCAKNSAPLSGV 403
Query: 438 VSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLG 497
VSKAS+GSLEL+EL C NMMQFL SSAENGWRVLGG++++KAVPL+++ G PTILV+G
Sbjct: 404 VSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTIANKAVPLSQVELGVPTILVMG 463
Query: 498 SEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVS 557
SEGTGLRPLVERSCTHLVRIPGN+ V V + D +G+ S +SF+AVESLNVS
Sbjct: 464 SEGTGLRPLVERSCTHLVRIPGNVDVSVEGADA-DAGEEGDSSSNRDLRSFLAVESLNVS 522
Query: 558 VAAGVLLHHL 567
VAAGVLL+HL
Sbjct: 523 VAAGVLLYHL 532
>gi|57899959|dbj|BAD87895.1| putative tRNA/rRNA methyltransferase [Oryza sativa Japonica Group]
Length = 517
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/427 (58%), Positives = 302/427 (70%), Gaps = 52/427 (12%)
Query: 173 SSWEESAKRLEKVTTTNIGRSLEESTKTFSRTEE--HRERVVDMSTGHRNVYAKNQGTAE 230
SSWE SA+ K FSR ++ E + D +G +
Sbjct: 117 SSWETSAE------------------KFFSRGDQSPRGEVLTDRGSGREII--------- 149
Query: 231 EEGEEMEAVSDSKWNKRRNSFRRDVK------------ARTEKPEYQRWNRQENSGRTTW 278
E E+ ++ + KW + ++ +RR V R +KPE ++W+RQEN GR TW
Sbjct: 150 REEEDNGSIDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTW 209
Query: 279 KEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV 338
KEA STVPKMVG+G+YGVGPVLAAL A+ R+FYALY+QEG+ S +N+KKKDKKG EKV
Sbjct: 210 KEAGESTVPKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGIEKV 269
Query: 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWV 398
L++AE +G+ + E SKHDLNMVV NRPHQGLVLDASPLEMV KEL+P+ D+ +A +W+
Sbjct: 270 LQLAERIGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAPVWI 329
Query: 399 ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMM 458
ALDEV DPQNLGAIIRSAYFFGA GVVLCAKNSAPLSGVVSKAS+GSLEL+EL C NMM
Sbjct: 330 ALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMM 389
Query: 459 QFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
QFL SSAENGWRVLGG+V+ KA+PL+E+ PG+PTILVLGSEGTGLRPLVERSCTHLVRIP
Sbjct: 390 QFLSSSAENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIP 449
Query: 519 GNIPVDVTAGEIDDVDADG-----NHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
GN+ D D DG N+ + +SF+AVESLNVSVAAGVLL+HL G +
Sbjct: 450 GNVDGSFVGA---DTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLAG---T 503
Query: 574 NNSHIED 580
N S + D
Sbjct: 504 NASPVSD 510
>gi|125571975|gb|EAZ13490.1| hypothetical protein OsJ_03406 [Oryza sativa Japonica Group]
Length = 427
Score = 462 bits (1190), Expect = e-127, Method: Compositional matrix adjust.
Identities = 249/430 (57%), Positives = 304/430 (70%), Gaps = 52/430 (12%)
Query: 170 SSHSSWEESAKRLEKVTTTNIGRSLEESTKTFSRTEE--HRERVVDMSTGHRNVYAKNQG 227
++ SSWE SA+ K FSR ++ E + D +G +
Sbjct: 24 AASSSWETSAE------------------KFFSRGDQSPRGEVLTDRGSGREII------ 59
Query: 228 TAEEEGEEMEAVSDSKWNKRRNSFRRDVK------------ARTEKPEYQRWNRQENSGR 275
E E+ ++ + KW + ++ +RR V R +KPE ++W+RQEN GR
Sbjct: 60 ---REEEDNGSIDNPKWGRIKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGR 116
Query: 276 TTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGY 335
TWKEA STVPKMVG+G+YGVGPVLAAL A+ R+FYALY+QEG+ S +N+KKKDKKG
Sbjct: 117 KTWKEAGESTVPKMVGQGVYGVGPVLAALMAERRDFYALYIQEGMDFSVSNKKKKDKKGI 176
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
EKVL++AE +G+ + E SKHDLNMVV NRPHQGLVLDASPLEMV KEL+P+ D+ +A
Sbjct: 177 EKVLQLAERIGLKVIEASKHDLNMVVDNRPHQGLVLDASPLEMVNTKELEPVRVDDGKAP 236
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
+W+ALDEV DPQNLGAIIRSAYFFGA GVVLCAKNSAPLSGVVSKAS+GSLEL+EL C
Sbjct: 237 VWIALDEVMDPQNLGAIIRSAYFFGAEGVVLCAKNSAPLSGVVSKASAGSLELIELLSCR 296
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
NMMQFL SSAENGWRVLGG+V+ KA+PL+E+ PG+PTILVLGSEGTGLRPLVERSCTHLV
Sbjct: 297 NMMQFLSSSAENGWRVLGGTVAPKAIPLSEVVPGEPTILVLGSEGTGLRPLVERSCTHLV 356
Query: 516 RIPGNIPVDVTAGEIDDVDADG-----NHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570
RIPGN+ D D DG N+ + +SF+AVESLNVSVAAGVLL+HL G
Sbjct: 357 RIPGNVDGSFVGA---DTDTDGGEEGDNYSGNQDMKSFLAVESLNVSVAAGVLLYHLAG- 412
Query: 571 QVSNNSHIED 580
+N S + D
Sbjct: 413 --TNASPVSD 420
>gi|168043421|ref|XP_001774183.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162674451|gb|EDQ60959.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 280
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 141/278 (50%), Positives = 186/278 (66%), Gaps = 29/278 (10%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE +YGV P+ AA A+ R F+ LYVQ L + K+KDK+ +L A N+ + ++
Sbjct: 18 GEAVYGVAPIRAAFLAERRIFHTLYVQTNLVDNIATGKRKDKQAVNWILNRAHNLEMKVE 77
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
SK LN++V NRPHQGLVLDASPLE+V + L+ S + ++ +WVALDEV DPQN G
Sbjct: 78 TVSKQHLNLLVDNRPHQGLVLDASPLELVPCEYLERPSIQDGRSPVWVALDEVIDPQNFG 137
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AI+RS ++ GA+GVV+CAKNSAPLSGVVSKAS+G+LE+ME++ C NMM+FL +S +NGWR
Sbjct: 138 AILRSCHYLGATGVVVCAKNSAPLSGVVSKASAGALEVMEIQSCRNMMKFLDTSVQNGWR 197
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
+G S +A+P+ E+ PG PTILVLG+EG GLR V+RSCT LV I +
Sbjct: 198 AVGASSEPRALPIQELEPGLPTILVLGNEGRGLRTNVKRSCTELVSIKAD---------- 247
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AV+SLNVSVAAG+LLH L+
Sbjct: 248 -------------------AVDSLNVSVAAGILLHDLL 266
>gi|302804484|ref|XP_002983994.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
gi|300148346|gb|EFJ15006.1| hypothetical protein SELMODRAFT_3011 [Selaginella moellendorffii]
Length = 244
Score = 258 bits (660), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 140/276 (50%), Positives = 179/276 (64%), Gaps = 32/276 (11%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+GPV AAL A+ R+ Y LYVQ GL + K+K ++K A+ + + ++
Sbjct: 1 EALYGIGPVRAALQARRRDLYVLYVQNGLD-EKHPGKRKALADVLWIMKAAKRLELRVET 59
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
TSKH LN++V NRPHQG+VLDASPLEMV I LD A +A +WVALDEV DPQN GA
Sbjct: 60 TSKHALNVLVDNRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGA 119
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS++FFG GVV+C+KNSAPLSGVVSKAS+G+LE+++L C NMM FL SA+NGWRV
Sbjct: 120 ILRSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRV 179
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G S S ++ L ++P PTILVLG+EG G+RP + ++R PG
Sbjct: 180 IGTSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEVDCVLR-PGT----------- 227
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V+SLNVSVAAGVLLH L
Sbjct: 228 -------------------VDSLNVSVAAGVLLHEL 244
>gi|302753442|ref|XP_002960145.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
gi|300171084|gb|EFJ37684.1| hypothetical protein SELMODRAFT_3012 [Selaginella moellendorffii]
Length = 244
Score = 258 bits (659), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 139/276 (50%), Positives = 179/276 (64%), Gaps = 32/276 (11%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+GPV AAL A+ R+ Y LY+Q GL + K+K ++K A+ + + ++
Sbjct: 1 EALYGIGPVRAALQARRRDLYVLYIQNGLD-EKHPGKRKALADVLWIMKAAKRLELRVET 59
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
TSKH LN++V NRPHQG+VLDASPLEMV I LD A +A +WVALDEV DPQN GA
Sbjct: 60 TSKHALNVLVDNRPHQGMVLDASPLEMVDISALDRPDAMLARAPVWVALDEVKDPQNFGA 119
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS++FFG GVV+C+KNSAPLSGVVSKAS+G+LE+++L C NMM FL SA+NGWRV
Sbjct: 120 ILRSSHFFGVCGVVVCSKNSAPLSGVVSKASAGALEMIDLLSCKNMMMFLRDSADNGWRV 179
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G S S ++ L ++P PTILVLG+EG G+RP + ++R PG
Sbjct: 180 IGTSNSPESEVLGDLPKNVPTILVLGNEGVGIRPFLNSEADCVLR-PGT----------- 227
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V+SLNVSVAAGVLLH L
Sbjct: 228 -------------------VDSLNVSVAAGVLLHEL 244
>gi|384250770|gb|EIE24249.1| SpoU rRNA methylase family protein [Coccomyxa subellipsoidea C-169]
Length = 290
Score = 226 bits (575), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 131/317 (41%), Positives = 176/317 (55%), Gaps = 44/317 (13%)
Query: 265 QRW--------NRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYV 316
QRW N QE+S ++ + GE +YGV PVL AL A RE + LYV
Sbjct: 2 QRWQSRDGPSANGQESSSGRALRDG-------LQGEAVYGVNPVLGALQAMRREVHVLYV 54
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPL 376
QE K K+G + + + G +IK SKHDLN+V N+PHQGL+LD S L
Sbjct: 55 QEA------TEGTKKKEGVPQAIAAMKERGGTIKYVSKHDLNLVTDNKPHQGLMLDCSAL 108
Query: 377 EMVKIKELDPISA----DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+ ++E P + D + +W+ALDE+ DPQNLGA +R AYF G SGV+ C +NSA
Sbjct: 109 DWEALEEFPPADSAAQPDSGRPPVWLALDEIGDPQNLGAAVRVAYFLGVSGVLCCERNSA 168
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
PLS VSKAS+G+LE + L C +M + L +AE+GW V+G + A +PT
Sbjct: 169 PLSPAVSKASAGALEWLPLHACRSMPRTLTRAAESGWHVVGAGSEADAESCKGFTVSRPT 228
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
ILV+G+EG GLRP+V R+C ++RI P G H + V+
Sbjct: 229 ILVMGNEGRGLRPVVRRACEGILRIDSAAP------------GPGRH-------QPLGVD 269
Query: 553 SLNVSVAAGVLLHHLVG 569
SLNVSVA G+LLH L+G
Sbjct: 270 SLNVSVATGILLHQLLG 286
>gi|452823739|gb|EME30747.1| RNA methyltransferase, TrmH family [Galdieria sulphuraria]
Length = 349
Score = 216 bits (550), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 184/333 (55%), Gaps = 42/333 (12%)
Query: 256 KARTEKPEYQRWNRQENSGR-----TTW--KEAAP---------STVPKMVGEG---LYG 296
KART +RW+ + NS W K+ +P S++ K + G +YG
Sbjct: 32 KARTPSVPCRRWHAKTNSAPRAGKGAIWEHKDKSPILSETDSTLSSLQKAMKSGDDFIYG 91
Query: 297 VGPVLAALSAKTRE-FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
V PV AAL+ KTR LY+QE S K+KD +K++++AE I K +K
Sbjct: 92 VTPVYAALTVKTRNPIRCLYLQENADFS----KRKDAALLQKIVQLAEEANIPSKTLNKG 147
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS-LWVALDEVTDPQNLGAIIR 414
DLN + G RPHQG++L A+PL++ I++L D+A+ +W+ALDEV DPQNLG+++R
Sbjct: 148 DLNNLSGQRPHQGIILQAAPLQLEYIEQLPSTGLSPDEAAPIWLALDEVMDPQNLGSLLR 207
Query: 415 SAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGG 474
+A F G +GV +C KNSAPL+G VSKAS+G++ELM + NM +FL +S GW +LG
Sbjct: 208 TACFLGITGVAICDKNSAPLTGTVSKASAGAMELMTIHAVRNMSRFLQNSQRQGWYILGA 267
Query: 475 SVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVD 534
S+ + V + I P P +LVLGSEG GLR V+ C V I I
Sbjct: 268 SMEKETVNIENIHPSVPVVLVLGSEGFGLRTNVQNVCNGFVAIQQRIST----------- 316
Query: 535 ADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
S + ++SLNV VA G+L+ L
Sbjct: 317 ------SCNNNVALSLIDSLNVGVAGGILMEQL 343
>gi|145354481|ref|XP_001421512.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581749|gb|ABO99805.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 318
Score = 214 bits (546), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 118/287 (41%), Positives = 168/287 (58%), Gaps = 27/287 (9%)
Query: 282 APSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKM 341
AP+ +VGE +YG PVL AL R +ALYVQ G ++N K + ++L++
Sbjct: 52 APTIAEGLVGEIVYGTNPVLEALRRNRRALFALYVQTGEGGAANGGKGAGAE--SEILRL 109
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
AE +++K SKHDLNM N+PHQG++LDA LE+ +++L P + +W+ALD
Sbjct: 110 AEARAVTVKRASKHDLNMACDNKPHQGVLLDAEALEIPTLEDL-PKWDGRGEPPVWLALD 168
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
E+ DPQNLGA +RSA+F G GVV CAKNSAP + VSKAS+G++E + M +FL
Sbjct: 169 EIVDPQNLGAALRSAHFLGVDGVVCCAKNSAPFNATVSKASAGAMEAQVVHQTGVMHRFL 228
Query: 462 VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNI 521
+ + GW V+G + ++A +++ PTILV+G+EG+GLR V R+C L+ IP
Sbjct: 229 AKARDEGWDVVGAAADARAEDVSDFSVRAPTILVMGNEGSGLRTNVRRACNRLIEIP--- 285
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
S V+SLNVSVAAG+L+H LV
Sbjct: 286 ---------------------RSASSAAGVDSLNVSVAAGILIHRLV 311
>gi|115439859|ref|NP_001044209.1| Os01g0742000 [Oryza sativa Japonica Group]
gi|113533740|dbj|BAF06123.1| Os01g0742000, partial [Oryza sativa Japonica Group]
Length = 163
Score = 214 bits (544), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/162 (68%), Positives = 127/162 (78%), Gaps = 11/162 (6%)
Query: 424 VVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPL 483
VVLCAKNSAPLSGVVSKAS+GSLEL+EL C NMMQFL SSAENGWRVLGG+V+ KA+PL
Sbjct: 1 VVLCAKNSAPLSGVVSKASAGSLELIELLSCRNMMQFLSSSAENGWRVLGGTVAPKAIPL 60
Query: 484 NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG-----N 538
+E+ PG+PTILVLGSEGTGLRPLVERSCTHLVRIPGN+ D D DG N
Sbjct: 61 SEVVPGEPTILVLGSEGTGLRPLVERSCTHLVRIPGNVDGSFVGA---DTDTDGGEEGDN 117
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIED 580
+ + +SF+AVESLNVSVAAGVLL+HL G +N S + D
Sbjct: 118 YSGNQDMKSFLAVESLNVSVAAGVLLYHLAG---TNASPVSD 156
>gi|298712193|emb|CBJ33064.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 550
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 128/325 (39%), Positives = 176/325 (54%), Gaps = 71/325 (21%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ PVL L RE LY Q+GL+ ++ KKD+ ++ +A + + T
Sbjct: 233 VYGIAPVLNVLRNNRREKLGLYCQDGLAPAN----KKDRAAANRIYDIARETDVPMTTTD 288
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEM--------VKIKELDP------------------- 386
K LN + GNRPHQG +L A PL+ V+ E DP
Sbjct: 289 KGYLNTLCGNRPHQGFILKARPLKFEPILFLPRVEDVEADPSVEATATEADAETSPEHDD 348
Query: 387 --ISADEDQAS------------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVL 426
+ED+++ +W+ALDEVTDPQN GA++RSA+FFGASGVV
Sbjct: 349 DDDGQEEDRSAAAAPKKPPAPLAAAATGQVWLALDEVTDPQNFGALLRSAHFFGASGVVA 408
Query: 427 CAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEI 486
CAKNSA L+ VSK+S+G++E+M + NMM+FL S ENGWRV+G SVS ++ PL+E+
Sbjct: 409 CAKNSAALTATVSKSSAGAVEVMRVHSTANMMRFLKRSRENGWRVVGTSVSERSGPLHEL 468
Query: 487 PPG---QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAE 543
P G PTI+VLG+EG G+R V R C LV + G DG G+
Sbjct: 469 PAGPGAPPTIVVLGNEGYGVRTNVLRECEFLVEVAG----------------DGG-GALA 511
Query: 544 QFQSFMAVESLNVSVAAGVLLHHLV 568
+ + V+SLNVSV GV+L HL+
Sbjct: 512 EGATPSTVDSLNVSVTGGVVLFHLL 536
>gi|308812149|ref|XP_003083382.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
gi|116055262|emb|CAL57658.1| SpoU rRNA Methylase family protein (ISS) [Ostreococcus tauri]
Length = 320
Score = 209 bits (533), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 121/330 (36%), Positives = 175/330 (53%), Gaps = 44/330 (13%)
Query: 242 SKWNKRR-NSFRRDVKARTEKPEYQR--WNRQENSGRTTWKEAAPSTVPKMVGEGLYGVG 298
+ W RR D + R Y R R+ G P+ ++GE +YG
Sbjct: 27 TGWEGRRAREVAEDARRRGTATRYDRRAIRRERGDG--------PTIAEGLIGEMVYGTN 78
Query: 299 PVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
PVL AL R +ALYVQ + G ++L++A+ + + +K SKHDLN
Sbjct: 79 PVLEALRQNRRTLFALYVQ--------TGEGGGGHGTSEILRLAKELKVEVKSASKHDLN 130
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
M N+PHQG++LDA LE+ ++EL P +W+ALDEV DPQNLGA++RSA+F
Sbjct: 131 MACDNKPHQGVLLDAEALEIPTVEEL-PRWNGVGSPPVWLALDEVVDPQNLGAMLRSAHF 189
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
G G+V+C KNSAP + VSKAS+G++E + M +FL + ++GW V+G +
Sbjct: 190 LGVDGIVVCTKNSAPFNATVSKASAGAMEAQVVHRTGVMHRFLARARDDGWDVVGAAADP 249
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
+A ++ PT+LV+G+EG G+R V R+C LV IP + DG
Sbjct: 250 RAENIHAFEVAAPTVLVVGNEGVGIRTNVRRACNRLVSIPRGVSA-----------TDG- 297
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLNVSVAAG+L+H L+
Sbjct: 298 ------------VDSLNVSVAAGILIHALL 315
>gi|412986740|emb|CCO15166.1| predicted protein [Bathycoccus prasinos]
Length = 438
Score = 204 bits (519), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 130/348 (37%), Positives = 186/348 (53%), Gaps = 42/348 (12%)
Query: 234 EEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEG 293
+E E S +N R R KP Y + + + R P+ +GE
Sbjct: 109 DEYENSSPYYYNNRDRQGGRGGNYNDNKPAYLQRKEERKATREQ-----PTLREMALGEV 163
Query: 294 LYGVGPVLAALSAKTR-EFYALYVQEGLSLSSNNRKKKDKKGY---EKVLKMAENMGISI 349
++G PV AL R EFY L++QEG D Y EK++ A+ +G +I
Sbjct: 164 IFGQNPVKEALLQNKRDEFYRLWIQEG-----------DGGSYSSDEKMIARAKELGCTI 212
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA---------SLWVAL 400
+KHDLNM+ +RPHQG+ LD +PLEM I+ L + A SLW+AL
Sbjct: 213 SYATKHDLNMLTESRPHQGVALDCTPLEMENIESLLEENGSGKNAAETERNREHSLWLAL 272
Query: 401 DEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQF 460
DE+ DPQN GAI+R+A+F GVV+CAKNSAPLS VVSKASSG++E +++ N M +F
Sbjct: 273 DEIIDPQNFGAILRTAHFLNIDGVVVCAKNSAPLSPVVSKASSGAMETIKVYQTNAMHKF 332
Query: 461 LVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
L ++G+ V+G + S A ++ + QPT+LV+G+EG+GLR V R+C+ + +I G
Sbjct: 333 LAKCVDDGFNVIGLANQSGAENVSNLSLNQPTVLVVGNEGSGLRTNVRRACSRIAKIEG- 391
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G+ D N+ + +VESLNVSVA + L L
Sbjct: 392 ------GGD------DENNATTNTNNKTTSVESLNVSVATAIALFQLT 427
>gi|255085776|ref|XP_002505319.1| predicted protein [Micromonas sp. RCC299]
gi|226520588|gb|ACO66577.1| predicted protein [Micromonas sp. RCC299]
Length = 513
Score = 200 bits (509), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 174/305 (57%), Gaps = 44/305 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTRE-FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
++ GE ++G PVLA L+A+ RE A+++QEG S + +LK + G
Sbjct: 222 RVRGEAVFGRNPVLAMLAARRREEISAVWIQEGSDASRD----------RALLKAVQARG 271
Query: 347 ISIKETSKHDLNMVVGN---RPHQGLVLDASPLEMVKIKELDPISA-------------- 389
I+ + SKHDLNM+VG RPH G+V DASPL I L P+ A
Sbjct: 272 ITPEYASKHDLNMLVGGDGRRPHNGVVADASPLTPTPIDSL-PLPAEWATDRAGDGSGSS 330
Query: 390 -DEDQA-----SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
D++Q+ +W+ALDE+ DPQNLGA++RSA+F G +GVV+CAKNSAPLS VVSKASS
Sbjct: 331 VDDNQSRPSDPPVWLALDEIVDPQNLGAMLRSAHFLGVAGVVVCAKNSAPLSPVVSKASS 390
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G+LE M++R M +FL E GW V G + A + + +P+++V+G+EG GL
Sbjct: 391 GALERMDVRSVGVMPRFLQRCVEEGWDVFGADNAPDAEDVTAVSVARPSVVVVGNEGAGL 450
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVL 563
R V R+C +VRI G + GE E + V+SLNVSVA G+L
Sbjct: 451 RTNVRRACNRVVRIEGGGGAERGVGEAG---------VGEGSEGGDTVDSLNVSVATGIL 501
Query: 564 LHHLV 568
LH ++
Sbjct: 502 LHSML 506
>gi|348669336|gb|EGZ09159.1| hypothetical protein PHYSODRAFT_418960 [Phytophthora sojae]
Length = 265
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 113/286 (39%), Positives = 169/286 (59%), Gaps = 31/286 (10%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK----DKKGYEKVLKMAENMG 346
GEG+YG+ VL AL + R +ALYV+E + R KK D + E++ ++AE G
Sbjct: 3 GEGVYGIHSVLQALESGHRNAHALYVREERTALDGQRPKKKSAADVRALERIKELAEAKG 62
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDP-ISADEDQASLWVALDEVTD 405
+ + TSK LN + G++PHQG+VLDA+P+++ + K +P + D +++ + + LDE+ D
Sbjct: 63 VQLHTTSKWMLNHITGDKPHQGVVLDAAPIQLKEFKPAEPSVFTDSERSPVILVLDEIHD 122
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM--ELRYCNNMMQFLVS 463
PQN GAI+RSA+F G S VV+ +NSAPLS VS+AS G+LE+M +R+ N+ + L
Sbjct: 123 PQNFGAILRSAHFLGCSAVVVSDRNSAPLSPAVSRASVGALEVMVANVRFRRNLHEVLAI 182
Query: 464 SAENGWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIP 522
S + GWRV+G S ++ + G QPTILV+G+E GLR + + C +V IPG
Sbjct: 183 SGDLGWRVVGASSGPNSITSTNLSAGSQPTILVMGNEHRGLRKGIRQCCQDIVIIPGQA- 241
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
D D V+SLNVSVA+ +LL+ L+
Sbjct: 242 ----------TDEDTR------------VDSLNVSVASAILLYELL 265
>gi|303282009|ref|XP_003060296.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457767|gb|EEH55065.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 463
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 175/322 (54%), Gaps = 59/322 (18%)
Query: 275 RTTWKE---------AAPSTVPKMVGEGLYGVGPVLAALSAKTRE----------FYALY 315
RT W+E A P+ +M GE LYG+ P AAL R Y ++
Sbjct: 161 RTVWQERHDEKKRNRAEPTLAERMTGEALYGLNPARAALRDAARRARAGAAARRTIYRMF 220
Query: 316 VQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGN--RPHQGLVLDA 373
VQEG D G +L+ A + + I+ SKHDLN++ G+ RPH G+VLDA
Sbjct: 221 VQEG----------SDASGDAALLRAARDARVEIETVSKHDLNVLTGSPPRPHNGVVLDA 270
Query: 374 SPLEMVKIKEL------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
S L I +L + S + A +W+ALDEV DPQNLGA++RSA F G +GVV+C
Sbjct: 271 SALTPTPIDQLPRWVHGEGSSTVKGPAPVWLALDEVVDPQNLGAVLRSAKFLGVAGVVVC 330
Query: 428 AKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP 487
AKNSAPLS VVSKAS+G+LE M++R M +FL+ E+GW V G + A + ++
Sbjct: 331 AKNSAPLSPVVSKASAGALESMDVRSVGVMHRFLMRCVEDGWDVYGTAAEEGAADVADVD 390
Query: 488 P-GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQ 546
G+P++LV+G+EG GLR V R+CT ++RI G +
Sbjct: 391 ARGRPSVLVMGNEGAGLRTNVRRACTSMLRI---------------------AGGGGEGD 429
Query: 547 SFMAVESLNVSVAAGVLLHHLV 568
V+SLNVSVA GV+LH ++
Sbjct: 430 DDDGVDSLNVSVATGVILHAML 451
>gi|302831964|ref|XP_002947547.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
nagariensis]
gi|300267411|gb|EFJ51595.1| hypothetical protein VOLCADRAFT_103485 [Volvox carteri f.
nagariensis]
Length = 620
Score = 189 bits (479), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 118/315 (37%), Positives = 169/315 (53%), Gaps = 31/315 (9%)
Query: 281 AAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
A P + GE LYGV PVLAAL AK R+ + ++ + LS K+KD +V
Sbjct: 232 AGPCLRDTLQGEALYGVFPVLAALRAKRRKVHRAFILSSMDLS----KRKDAGLVRQVEA 287
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPL--EMVKIKELDPISADEDQAS--L 396
+ G+ + T +H+LN++ +RPHQ +D P E++ A+ +
Sbjct: 288 LCSEAGVEVVRTGRHELNLMSYDRPHQLAEMDEFPPADEVIAAAAGAVHGGAAGTAAPPV 347
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ALDEV DPQNLGA++RSAY GA GV+ CA+N APLS VVSKAS+G+LE +++ C N
Sbjct: 348 WLALDEVVDPQNLGAVVRSAYCLGAGGVLACARNCAPLSAVVSKASAGALEALQVHSCRN 407
Query: 457 MMQFLVSSAE-NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
+ + L+ + + GW VLG + S + + + +PTILVLGSEG GLR V R+C+ LV
Sbjct: 408 LPRTLMDARDRKGWTVLGAAAGSGSEAVGRVVVDRPTILVLGSEGFGLRTNVRRACSGLV 467
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA----------------------VES 553
R+ P AG + + + A + V+S
Sbjct: 468 RVDMAPPTTARAGRGISIPSSADDADAAVATNLRQPLPPSPPLPRQQQPQHAVLRGLVDS 527
Query: 554 LNVSVAAGVLLHHLV 568
LNVSVA G+LLH L+
Sbjct: 528 LNVSVATGILLHSLI 542
>gi|449016503|dbj|BAM79905.1| similar to ribose methyltransferase [Cyanidioschyzon merolae strain
10D]
Length = 457
Score = 181 bits (460), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 143/404 (35%), Positives = 195/404 (48%), Gaps = 74/404 (18%)
Query: 219 RNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRR--DVKARTEKPEYQRWNRQENSG-- 274
R+VY A E E V + KR F R D KPE + RQ G
Sbjct: 68 RSVYRVRWYAAASESEPRPQVPKQRSGKR-APFPRSADRAPSFPKPETELTERQWRRGPG 126
Query: 275 -RTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTR-EFYALYVQEGLSLSSNN--- 326
R + S + + + G LYG+ PV AALSA+ R FY L++ + L++S +
Sbjct: 127 ARPPRQRDVLSPLQEKLQSGHDFLYGLAPVFAALSARRRAHFYELFLLDRLAVSVEHQEQ 186
Query: 327 -----RKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDAS---PLEM 378
R++ K E++L A G+ I+ K LN + GNRPHQG VL+ S P+ M
Sbjct: 187 QYPVPRRETKKAVEEQILLAANQQGVKIQRVDKGTLNTLCGNRPHQGFVLECSALEPVPM 246
Query: 379 VKIKELDPISA--------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
V + +P E + W+ALDEV DPQNLGA++RSAYFFG GV++ KN
Sbjct: 247 VSPEAFEPRPRVYSPTNENHEPRHPCWLALDEVWDPQNLGALLRSAYFFGCDGVMVSRKN 306
Query: 431 SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE-NGWRVLGGSV------------- 476
SA L+ VSKASSG++E M++ +NM +FL + +GWRVLG ++
Sbjct: 307 SAGLTATVSKASSGAMEFMQVHAVSNMPRFLEQAHRVHGWRVLGTALPTSGMILQTREHL 366
Query: 477 ------------SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
S P E+ PTILVLG+EG GLR VER+CT I +
Sbjct: 367 SDGGGAPRHAQASRPVTPCAELALHTPTILVLGNEGHGLRTNVERACTAFAFIERGL--- 423
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
A + + AV+SLNVSVA +LLH L+
Sbjct: 424 ----------------VAAEDAALAAVDSLNVSVAGAILLHRLL 451
>gi|224097422|ref|XP_002334612.1| predicted protein [Populus trichocarpa]
gi|222873484|gb|EEF10615.1| predicted protein [Populus trichocarpa]
Length = 206
Score = 178 bits (452), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 107/190 (56%), Positives = 124/190 (65%), Gaps = 37/190 (19%)
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W E T P+ +G G GV+LCAKNSA LSGVVSKAS+GSLELMELR C N
Sbjct: 51 WKEATESTVPKIVGE--------GVYGVLLCAKNSALLSGVVSKASAGSLELMELRCCKN 102
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
MQFL SSAENGWRVLGGSVSSKAVPLNE+ PGQPTILVLGSEGTG
Sbjct: 103 RMQFLASSAENGWRVLGGSVSSKAVPLNEVLPGQPTILVLGSEGTG-------------- 148
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNS 576
D GE +++ S+ +F SF+AVESLNVSVAAGVLLHHL+G+ N+
Sbjct: 149 -------DEVEGEEINLER-----SSAEFGSFLAVESLNVSVAAGVLLHHLIGN---NDE 193
Query: 577 HIEDSSTATV 586
++ T+TV
Sbjct: 194 NLCIGHTSTV 203
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 36/69 (52%), Gaps = 14/69 (20%)
Query: 243 KWNKRRNSFRRDVKARTEKPEYQRWNRQENS--------------GRTTWKEAAPSTVPK 288
+W + S RR V +K +N +E+S GR TWKEA STVPK
Sbjct: 2 RWGIYKESTRRVVGVVKDKLSGYGYNEREDSVEGGEAEEELEENRGRKTWKEATESTVPK 61
Query: 289 MVGEGLYGV 297
+VGEG+YGV
Sbjct: 62 IVGEGVYGV 70
>gi|301108904|ref|XP_002903533.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
gi|262097257|gb|EEY55309.1| rRNA methyltransferase, putative [Phytophthora infestans T30-4]
Length = 326
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 110/293 (37%), Positives = 158/293 (53%), Gaps = 54/293 (18%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK----DKKGYEKVLKM 341
VP++ GEG+YG+ VL AL + R+ +ALYV+E + R KK D + E++ +
Sbjct: 80 VPQLAGEGVYGIHSVLQALESGHRDTHALYVREERAPMDGQRPKKKSAADVRALERIHDL 139
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
A + G+ I TSK LN + G++PHQ + SP+ +V LD
Sbjct: 140 AGSKGVEIHSTSKWMLNHITGDKPHQS---NRSPVILV--------------------LD 176
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM----ELRYCNNM 457
E+ DPQN GAI+RSA+F G S VV+ +N+APLS VS+AS G+LE+M +L N+
Sbjct: 177 EIHDPQNFGAILRSAHFLGCSAVVVSDRNTAPLSPAVSRASVGALEVMVANDKLMKARNL 236
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ L S + GWRV+G S +V ++ GQPTILV+G+E GLR + + C +V I
Sbjct: 237 HEMLAVSGDFGWRVVGASSGPNSVTSTKLSDGQPTILVMGNEHRGLRKHIRQCCQDVVII 296
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570
PG D D V+SLNVSVA+ +LL+ L+ H
Sbjct: 297 PGQA-----------TDEDTR------------VDSLNVSVASAILLYELLHH 326
>gi|384492058|gb|EIE83254.1| RNA methyltransferase, TrmH family, group 3 [Rhizopus delemar RA
99-880]
Length = 325
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 115/305 (37%), Positives = 164/305 (53%), Gaps = 52/305 (17%)
Query: 292 EGLYGVGPVLAALSAKTR-EFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
E +YG+ V AAL +K R + A+Y QE S KKKDK + ++K A+ I +
Sbjct: 40 EYVYGISSVSAALYSKKRSKLEAIYFQE--STEKKTTKKKDKAVIDSIVKAAKESTIRVI 97
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD---------------------PISA 389
T+K LN + ++PHQG+VL ASP +M++I L P SA
Sbjct: 98 YTNKGQLNSLTQDKPHQGIVLKASPRKMIEISSLSALTDKKAYEALIKRNKDDIDVPASA 157
Query: 390 DEDQAS------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
+ Q W+ALDEV DPQN G+I+R+A+FFG GV++C+KNSAPLS VSK SS
Sbjct: 158 FKFQIKPNRRFPFWIALDEVQDPQNFGSILRTAHFFGVDGVLVCSKNSAPLSPTVSKVSS 217
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G++E+M++ N++ FL S ENGW ++G + ++ +PTILVLG+EG GL
Sbjct: 218 GAMEIMDVFSTKNLLSFLKESNENGWDIVGAAAGAELDCFETEVEIKPTILVLGNEGVGL 277
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVL 563
R ++ +C IP SA + Q +V+SLNV VA GVL
Sbjct: 278 RTNIKNACNRFTSIP----------------------SALENQYNGSVDSLNVGVATGVL 315
Query: 564 LHHLV 568
+ L+
Sbjct: 316 TYSLI 320
>gi|224010707|ref|XP_002294311.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
gi|220970328|gb|EED88666.1| ribose methyltransferase [Thalassiosira pseudonana CCMP1335]
Length = 253
Score = 176 bits (446), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 110/270 (40%), Positives = 157/270 (58%), Gaps = 29/270 (10%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYE---KVLKMAENM-GISIKETSKHDLNMVVGNRPHQGL 369
L+VQEG +L++N R + E ++L +A+ + + + E K LN + GNRPHQG
Sbjct: 1 LFVQEG-TLANNKRTFRSSAKNEASSEILTLAQKIESLDVVEVDKGVLNTLCGNRPHQGF 59
Query: 370 VLDASPLEMVKIK----ELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGAS-GV 424
VL LE ++ A +D +W+ALDEV DPQNLGA++RSAYF G G+
Sbjct: 60 VLRCGGLEFEPLRGSSSLPSASLAGKDGPLVWLALDEVVDPQNLGALLRSAYFLGGRVGI 119
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV---SSKAV 481
++C+KNS+PL+ VS AS+G+LE M + +N+ + L + E+GWRVLG + S
Sbjct: 120 LVCSKNSSPLTTTVSAASAGALEFMTVYSTSNLPKMLNRAREDGWRVLGAAADIPDSGGA 179
Query: 482 PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGS 541
+E G+PTILVLGSEG GLR V RSC+ V++PG + ++ A N
Sbjct: 180 ARSET--GKPTILVLGSEGRGLRTWVARSCSGFVKVPGGL----------NMAASDNDED 227
Query: 542 AEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
A Q V+SLNVSV G+LL H + +Q
Sbjct: 228 ATQ----AGVDSLNVSVTGGILLWHFLSNQ 253
>gi|307102497|gb|EFN50770.1| hypothetical protein CHLNCDRAFT_142475 [Chlorella variabilis]
Length = 451
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 109/170 (64%), Gaps = 7/170 (4%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
VG+ LYGV PVLAAL A R + LY+QEG+ L+ K+KDK + + AE +G
Sbjct: 286 WVGDVLYGVSPVLAALQAGRRAVHTLYLQEGMDLA----KRKDKGAIQAAKQRAEELGAR 341
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS---LWVALDEVTD 405
+ SKHDLNMV NRPHQG+VLD SPLE + EL A +W+ LDEV D
Sbjct: 342 VLYASKHDLNMVADNRPHQGVVLDCSPLEFEPMSELPAAPAAPPPGGRLPVWLCLDEVMD 401
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
PQN GA +RSA+F G +GV+ C +NSAPLS VSKAS+G++EL+ + C
Sbjct: 402 PQNFGAALRSAHFLGVAGVLTCHRNSAPLSAAVSKASAGAMELLPVHSCK 451
>gi|219125428|ref|XP_002182984.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217405778|gb|EEC45720.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 212
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 132/232 (56%), Gaps = 35/232 (15%)
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
I I K LN + GNRPHQG VL L + ++ D S+W+ LDEV DP
Sbjct: 1 IPIASVDKGVLNTLSGNRPHQGYVLRCGKLFFESLNKIPHPDEDSAAPSMWLVLDEVVDP 60
Query: 407 QNLGAIIRSAYFFGAS---GVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
QNLGA++RSAYF G S G+++CAKNSAP S VS AS+G+LEL++L +N+ + L +
Sbjct: 61 QNLGALLRSAYFLGGSTKVGILVCAKNSAPPSPTVSAASAGALELVDLYSTSNLPRTLAA 120
Query: 464 SAENGWRVLGGSVSSK---AVPLNEIPP----GQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ +G+R++G S S VPL E+ PTILVLGSEG GLR LV +SCT V+
Sbjct: 121 AESDGFRIVGASASVPRDLNVPLYELQEISEMSGPTILVLGSEGHGLRSLVAKSCTEFVK 180
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+PG VDA G V+SLNVSV G+LL H +
Sbjct: 181 VPGA------------VDAGG-------------VDSLNVSVTGGILLWHFL 207
>gi|328875034|gb|EGG23399.1| hypothetical protein DFA_05531 [Dictyostelium fasciculatum]
Length = 487
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 159/321 (49%), Gaps = 64/321 (19%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGL----------SLSSN---NRK------ 328
++ GE L+G+ P+ ++ A R F ALY+ + SL + RK
Sbjct: 189 QIQGEALFGLNPIWISIFANNRSFNALYLLDSTYSRLKFGTLKSLDTQPDPKRKGEVVFD 248
Query: 329 -----------------KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
KK+ K ++++K + +G+ + K L+ H G+V+
Sbjct: 249 GENEQEEEENEVERYNDKKNVKAVKEIIKKCKELGVPVYPVKKQLLDTFSKWNVHNGMVM 308
Query: 372 DASPLEMVKIKELDPISADE----DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
D SPL I +L I+ + L VALDE+ DPQN GAIIR+ +FFG SGVV
Sbjct: 309 DCSPLTAESIDKLQVITKEAMDKLKSPPLVVALDEIWDPQNTGAIIRTCHFFGVSGVVTT 368
Query: 428 AKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP 487
K+S+PL+ V SKAS+G+LE + +M FL S ENGW+++G S+ + PLN +
Sbjct: 369 DKHSSPLTPVASKASAGALEDTPIYKTMSMYGFLKGSKENGWKIMGTSLGEDSKPLNSVK 428
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQS 547
QPTILV+G+EG G+ + + C V+IP V N
Sbjct: 429 LTQPTILVIGNEGFGVSDNIIQECDETVKIP--------------VSNKANP-------- 466
Query: 548 FMAVESLNVSVAAGVLLHHLV 568
+ESLN SV+AG++++HL+
Sbjct: 467 --KLESLNASVSAGIVINHLL 485
>gi|326668086|ref|XP_691554.4| PREDICTED: rRNA methyltransferase 1, mitochondrial [Danio rerio]
Length = 387
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 100/291 (34%), Positives = 147/291 (50%), Gaps = 42/291 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++GV P L AL+ R L+V+ G + ++ +V + A G+ IK
Sbjct: 130 EIVFGVAPCLLALTRGRRSASCLFVKSG--------EGPERDAILRVCQEAIRRGVQIKR 181
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE--DQASLWVALDEVTDPQNL 409
+K L + + HQGL L AS L IKE PI++ E +Q LW+ LD V DP NL
Sbjct: 182 VNKQTLEKMCDGKVHQGLCLQASCLGF--IKEERPITSLEVKNQRPLWLVLDGVQDPMNL 239
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAI+RSAY+ G +V NS PL+ VSKAS+G +E+M++ C+N+ + + E GW
Sbjct: 240 GAILRSAYYLGVDRIVSSINNSCPLTPTVSKASAGVMEVMDVFGCSNLKRMIKVKVEEGW 299
Query: 470 RVLG------GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
+V+G GS S + ++ +PT+L++G EG GL + + C L+ IP
Sbjct: 300 QVVGTVGLEEGSSQSNVLSCSDFKMSRPTLLLMGGEGDGLSSELRQLCDVLITIP----- 354
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
+ VESLNVSVA G+LLH L+ + N
Sbjct: 355 -------------------PRRHMHPGVESLNVSVATGILLHSLLSTRKGN 386
>gi|428176856|gb|EKX45738.1| hypothetical protein GUITHDRAFT_86895 [Guillardia theta CCMP2712]
Length = 172
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/187 (43%), Positives = 120/187 (64%), Gaps = 20/187 (10%)
Query: 384 LDPISADE--DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKA 441
+ PI +E D LW+ LDEV DPQNLGA++RSAYF GA GV++C+KNSA L+ VSKA
Sbjct: 1 MHPIPEEESKDGHPLWLVLDEVMDPQNLGALLRSAYFLGADGVIVCSKNSAGLTPSVSKA 60
Query: 442 SSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGT 501
S+G++EL ++ +N+MQFL S E GW+V+G ++ +VP++ +PT+LV+G+EG
Sbjct: 61 SAGAMELYQVYSVSNLMQFLNWSKELGWQVIGSALGENSVPVSSTKLTKPTLLVMGNEGR 120
Query: 502 GLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
GLR V R C LV++ + A ++ D+ D ++SLNVSVA G
Sbjct: 121 GLRTNVLRECDVLVQVQA-----IVASDLKDLGDD-------------VLDSLNVSVAGG 162
Query: 562 VLLHHLV 568
+L+HH +
Sbjct: 163 ILIHHFL 169
>gi|66817954|ref|XP_642670.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
gi|74876335|sp|Q76NT0.1|MRM1_DICDI RecName: Full=Mitochondrial rRNA methyltransferase; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase
gi|60470728|gb|EAL68702.1| hypothetical protein DDB_G0277479 [Dictyostelium discoideum AX4]
Length = 531
Score = 150 bits (378), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 55/268 (20%)
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
+K+ ++++K + + I ++ +K L+ RPHQG++LDASPL ++ I L+
Sbjct: 284 RKNLVALKEIVKNSFKLKIPVRSVNKGTLDSFSKGRPHQGIILDASPLTLLNIDFLEKFD 343
Query: 389 ADE-----------------------DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
+E D+ LW+ LDE+ DPQN+GAIIR+ FF GVV
Sbjct: 344 INERVNKRMNGGGGGGGGGGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVV 403
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV-----SSKA 480
+ KNS+P++ SK+SSG+ E + ++ FL SS NGW V+G S+ +
Sbjct: 404 ISNKNSSPITPAASKSSSGACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPC 463
Query: 481 VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG 540
+ +N+I QPTIL+LG+EG GL+P V C ++I G GN+
Sbjct: 464 LDINQIKLDQPTILILGNEGFGLKPSVLEICNKTIKIVG-----------------GNY- 505
Query: 541 SAEQFQSFMAVESLNVSVAAGVLLHHLV 568
++SLNVSV +G+L+H L+
Sbjct: 506 ---------KIDSLNVSVTSGILIHTLL 524
>gi|328773133|gb|EGF83170.1| hypothetical protein BATDEDRAFT_85791 [Batrachochytrium
dendrobatidis JAM81]
Length = 354
Score = 150 bits (378), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 120/373 (32%), Positives = 174/373 (46%), Gaps = 103/373 (27%)
Query: 273 SGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQE-----GLSLSSNNR 327
S R +++ ST PK V E LYG V+ A+ R+ L V+E G+ + N
Sbjct: 5 SARLLFRQH--STRPKNV-EYLYGASVVIPAMEFGVRKIKTLLVKEDQRFGGMKIRGNGE 61
Query: 328 KKKDKKGYEKV----------------LKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
K K+ + +A I +KE L+ + GNRPHQGLVL
Sbjct: 62 AILSSKILPKISSADMGQDSRALLDYAVALANQREIPVKEVPVSHLDRLAGNRPHQGLVL 121
Query: 372 ------------------DASPLEMVK-IKELDP-------ISADED-QASLWVALDEVT 404
DA+ ++ K + E+D + ED + W+ALD++
Sbjct: 122 ATLAPKVTHLHALGNCDLDANDVDFEKNVYEVDAGGDGILRLKTREDRKYPFWIALDQIV 181
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DPQNLGAI+RSAY+FG GVV+ ++SAP S + SKAS+G++E M L N+ + L S
Sbjct: 182 DPQNLGAILRSAYYFGVDGVVVTERDSAPFSPISSKASAGAMEAMPLYSTVNLGKLLQES 241
Query: 465 AENGWRVLGGSVSSK---AVPL------------NEIP-----------PGQPTILVLGS 498
A NGW++LG + ++K +PL N++ PTILVLG+
Sbjct: 242 AINGWQILGTNTNAKKSDLIPLCHFKQRCDMEVSNDLDDLKTHTPLLRLDSAPTILVLGN 301
Query: 499 EGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA---VESLN 555
EG G+R LV + C H + I + +QF ++SLN
Sbjct: 302 EGHGMRTLVSKHCHHHLII-----------------------TQDQFSPNFKKSRIDSLN 338
Query: 556 VSVAAGVLLHHLV 568
VSVAAG+LLH L+
Sbjct: 339 VSVAAGILLHELL 351
>gi|402899900|ref|XP_003912922.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Papio anubis]
Length = 353
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 97/293 (33%), Positives = 149/293 (50%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MA+
Sbjct: 44 VPTSRLELLFGLSPCLLALRAARRSVARLLLQAGKAGLQGERAE--------LLRMAQAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL E + S +D LW+ L+ + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWSEAEEASPGDDPQQLWLVLEGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLGGSVSSKA-------VPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G +A +P+ E P +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPRAEDPQSSEIPITSCLEFPWDRPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q ESLNVSVAAG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGFESLNVSVAAGILLHSIC 304
>gi|385303938|gb|EIF47980.1| ribose methyltransferase [Dekkera bruxellensis AWRI1499]
Length = 350
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 116/373 (31%), Positives = 184/373 (49%), Gaps = 74/373 (19%)
Query: 235 EMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKM----V 290
E + + +W K + +++ ++ + K + R + + R ++ V ++ +
Sbjct: 11 ERDNMDKDEWFKXKYAWKHSLQKKAFKEKGYRRRSKGDDKRHYXEQNVMXXVSQLKLNPL 70
Query: 291 GEGLYGVGPVLAAL-SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ LYG PVLAAL S+K +F L++ N KK K E ++ +A + GI+I
Sbjct: 71 VDYLYGTNPVLAALRSSKRTDFGKLHLH--------NPKKTPKD--ESIIALAXSRGINI 120
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE------------------ 391
+T K DLN + N H G+VL+ PL++ ++K L S ++
Sbjct: 121 IDTXKQDLNRMTDNGVHNGIVLETRPLDICELKNLGKPSKEQINJGKTGLEGENTLELER 180
Query: 392 ----DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ + + LDE++DP N+GAIIRSAYF G +VL ++N A L+ +VSKASSG++E
Sbjct: 181 DTNTSRFPVGIYLDEISDPHNVGAIIRSAYFLGVDFIVLSSRNCASLTPLVSKASSGAME 240
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLG-------GSVSSKAVP---LNEIPPGQPTILVLG 497
+ + Y + F SA NGW ++ S+KAV L+E+ P +LV+G
Sbjct: 241 FIPIFYALKPLSFFEESAANGWSIVSTLAPQQIARYSNKAVDRKQLHELVQZSPVLLVIG 300
Query: 498 SEGTGLRP-LVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLN 555
SEG G+R LV RS TH+V I P +D +V+SLN
Sbjct: 301 SEGDGIRTNLVSRS-THVVGINPARAALD------------------------NSVDSLN 335
Query: 556 VSVAAGVLLHHLV 568
VSVA +L+ LV
Sbjct: 336 VSVATALLIXQLV 348
>gi|332258703|ref|XP_003278433.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Nomascus
leucogenys]
Length = 353
Score = 147 bits (371), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 152/296 (51%), Gaps = 42/296 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
I +P + Q +ESLNVSVAAG+LLH + +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSICNQR 307
>gi|327284696|ref|XP_003227072.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Anolis
carolinensis]
Length = 382
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 152/293 (51%), Gaps = 48/293 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+G+ P AL+ R F L+++ G++ ++ E + AE+ I ++
Sbjct: 123 EMLFGIAPCSLALATSKRSFSRLFLKAGVTPTT-----------EAFSRQAEDRKIPVQT 171
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLE-----MVKIKELDPISADEDQASLWVALDEVTDP 406
+ L+ + HQG+ L+A+PL L+ + +E LW+AL+ + DP
Sbjct: 172 VPRKVLDRLSHGGVHQGVCLEATPLHPTGWTQAPAHRLEGATTEEAPQLLWLALEGIQDP 231
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
NLGA++RSA+F G G+V+ KNS PL+ VVSKASSG++E++++ +++ FL ++
Sbjct: 232 MNLGAVLRSAHFLGVDGIVMSRKNSCPLTPVVSKASSGAMEVLDVFSADDLPGFLKVKSK 291
Query: 467 NGWRVLGGSVSSKA------VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI-PG 519
GW VLG +KA V + +PTILVLG+EG GL P + C ++ I PG
Sbjct: 292 EGWEVLGTVAHAKAQDGIPVVSCLDFRWMKPTILVLGNEGHGLSPETKSLCRRMLTIAPG 351
Query: 520 NIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
E++ +ESLNVSVAAG+LLH + +V
Sbjct: 352 R--------ELEP-----------------GIESLNVSVAAGILLHSICAQKV 379
>gi|281206723|gb|EFA80908.1| hypothetical protein PPL_06143 [Polysphondylium pallidum PN500]
Length = 520
Score = 146 bits (369), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 85/248 (34%), Positives = 131/248 (52%), Gaps = 30/248 (12%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEM-----VK 380
NR KK+ +LK E + + I K L++ R HQGLVLD SPL + +
Sbjct: 290 NRDKKNIGALVDILKKCEQLEVEIVPVDKQRLDVFSKFRVHQGLVLDCSPLTITTLTGLS 349
Query: 381 IKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK 440
+ ++ AD ++ L +ALDE+ DPQN GAI+R+ ++FG GV++ K S P+S SK
Sbjct: 350 VPDMTEFEAD-NRYPLIIALDELWDPQNTGAIVRTCHYFGLDGVIVTDKGSIPVSPFASK 408
Query: 441 ASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS-KAVPLNEIPPGQPTILVLGSE 499
+SSG++E + C ++ FL +S GW ++G SVS ++ + + +PT+LV+G+E
Sbjct: 409 SSSGAIEEFPIFKCLSLASFLQASKARGWHIIGTSVSDPESKDITNVKIDKPTVLVIGNE 468
Query: 500 GTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
G GL+ V C ++ I G Q S ++SLN SV
Sbjct: 469 GYGLKDKVVSHCNEMIMIKG-----------------------LQRSSNEKIDSLNASVT 505
Query: 560 AGVLLHHL 567
G+L+HHL
Sbjct: 506 TGILIHHL 513
Score = 39.7 bits (91), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGL 320
+ GEGL+GV P+ AL A R F LY+ E L
Sbjct: 177 LTGEGLFGVNPIWVALYADNRSFNRLYILESL 208
>gi|114667932|ref|XP_001173585.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan
troglodytes]
gi|410206764|gb|JAA00601.1| mitochondrial rRNA methyltransferase 1 homolog [Pan troglodytes]
Length = 353
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGMSPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q +ESLNVSVAAG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSIC 304
>gi|397494265|ref|XP_003818004.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pan paniscus]
Length = 349
Score = 146 bits (368), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 40 VPTSRLELLFGMSPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 91
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 92 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 151
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 152 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 211
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 212 QQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLL 271
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q +ESLNVSVAAG+LLH +
Sbjct: 272 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSIC 300
>gi|426348606|ref|XP_004041923.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
mitochondrial [Gorilla gorilla gorilla]
Length = 354
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 150/293 (51%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGMSPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S+ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSTDDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q +ESLNVSVAAG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSIC 304
>gi|40068479|ref|NP_079140.2| rRNA methyltransferase 1, mitochondrial precursor [Homo sapiens]
gi|74736506|sp|Q6IN84.1|MRM1_HUMAN RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|47939214|gb|AAH72411.1| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
[Homo sapiens]
gi|119577975|gb|EAW57571.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae),
isoform CRA_a [Homo sapiens]
gi|158258046|dbj|BAF84996.1| unnamed protein product [Homo sapiens]
gi|312150994|gb|ADQ32009.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae)
[synthetic construct]
Length = 353
Score = 145 bits (367), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q +ESLNVSVAAG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSIC 304
>gi|395748884|ref|XP_002827351.2| PREDICTED: rRNA methyltransferase 1, mitochondrial [Pongo abelii]
Length = 320
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 99/296 (33%), Positives = 151/296 (51%), Gaps = 42/296 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGLSPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PHNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSAEDPQSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
I +P + Q +ESLNVSVAAG+LLH + +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSICSQR 307
>gi|196006710|ref|XP_002113221.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
gi|190583625|gb|EDV23695.1| hypothetical protein TRIADDRAFT_37807 [Trichoplax adhaerens]
Length = 267
Score = 145 bits (366), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 95/288 (32%), Positives = 150/288 (52%), Gaps = 43/288 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ P AL A R+ Y +YV++ K K E ++ A +GI +
Sbjct: 8 EIIYGIAPCQLALKADRRKIYHIYVRDPAG------TLKPNKSIEHIIFKARKLGIHVLP 61
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIK-ELDPISADEDQASLWVALDEVTDPQNLG 410
+ K L+ + RPHQG+ + A+PL I+ +LD + ++ +LW+ L++V DP NLG
Sbjct: 62 SDKRYLDKLTEGRPHQGVAMKATPLRPNLIRHDLDKTAMANNRKALWLGLNDVQDPMNLG 121
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A+IR+A G + VV+ ++ +A LS VVSKAS+G++E+ + N+ ++L EN W
Sbjct: 122 ALIRTAALMGVNRVVVNSRKTARLSAVVSKASAGAMEVYPIYAVKNLSKYLDYLVENDWN 181
Query: 471 VLGGSVSSKAV-------PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNI 521
++ G+V K V N G+PTIL+LG+EG G+ ++ C + IP +
Sbjct: 182 II-GTVGHKEVNQYQAMSCQNFNHNGKPTILMLGNEGFGISASIKEKCNSFLTIPTSSSC 240
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
P D ++SLNVSVAAG+LL+ L G
Sbjct: 241 PPD--------------------------IDSLNVSVAAGILLYSLRG 262
>gi|443706617|gb|ELU02573.1| hypothetical protein CAPTEDRAFT_169258 [Capitella teleta]
Length = 310
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 95/291 (32%), Positives = 145/291 (49%), Gaps = 45/291 (15%)
Query: 285 TVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN 344
T+P + GE L+G+ PVL A+ R ++V++G + + +LK A
Sbjct: 51 TLPDVQGEVLFGLYPVLLAIQEGRRYLNRVFVKKGAG---------QETLMKAILKAATV 101
Query: 345 MGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVT 404
G+ + E +L+ + NR HQG+ LDA L L + + E + LWV LD +
Sbjct: 102 KGVEVHECEAAELDFLSKNRQHQGVCLDAIALNFF----LHSVDSSE-EPRLWVILDRIQ 156
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DP N GA++RS Y+ G V+ +K LS VV KAS+G+LEL L +N+ F+ +
Sbjct: 157 DPMNFGAVLRSCYYLGVHRVITSSKEGCALSPVVCKASAGALELAPLFKTSNLTDFIQAW 216
Query: 465 AENGWRVLGG-------SVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
E G+R+LG + SS +PLN I Q TIL+ G+EG G+ + C L+ I
Sbjct: 217 REKGFRILGTGMPTEGEACSSPVIPLNTIDMQQDTILIFGNEGKGMDTELISLCDALLTI 276
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ + +++SLNVSVAAG++LHHL+
Sbjct: 277 ------------------------SPRKALHQSLDSLNVSVAAGIVLHHLL 303
>gi|395845998|ref|XP_003795703.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Otolemur
garnettii]
Length = 408
Score = 144 bits (364), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 98/288 (34%), Positives = 147/288 (51%), Gaps = 44/288 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+G+ P L AL A R L +Q G + R +L+ AE GI +
Sbjct: 53 ELLFGLSPCLLALQAARRRVSRLLLQAGKAGLQGERAD--------LLRAAEAQGIPVLR 104
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + + HQG+ L+ SPL E + +D LW+ L+ + DP+NLGA
Sbjct: 105 PRRQKLDALCSYQVHQGVCLEVSPLRPRPWTEDGEANPGDDPLQLWLVLESLQDPRNLGA 164
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +++ FL + A+ GW V
Sbjct: 165 VLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQAKAQQGWLV 224
Query: 472 LG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLVRI-PGN 520
G G + +++P +PTILVLG+EG+GL V+ SC L+ I PG
Sbjct: 225 AGTVGCPRPEVSQYSKVPITSCLDFCWDRPTILVLGNEGSGLSQEVQASCQLLLTILPGR 284
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ AG +ESLNVSVAAG+LLH +
Sbjct: 285 ---QLPAG----------------------LESLNVSVAAGILLHSIC 307
>gi|19113497|ref|NP_596705.1| ribose methyltransferase (predicted) [Schizosaccharomyces pombe
972h-]
gi|74627042|sp|O94631.1|MRM1_SCHPO RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|4456828|emb|CAB37444.1| ribose methyltransferase (predicted) [Schizosaccharomyces pombe]
Length = 301
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 154/311 (49%), Gaps = 76/311 (24%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G V AL+ + RE ALYVQ + S + +K Y+ I IK
Sbjct: 32 EFVFGTHSVKNALATRKRECRALYVQNA-DIHSEFEEFLNKLQYK----------IPIKS 80
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-----------------------DPIS 388
+K LN + RPH G+VL+AS L + I +L S
Sbjct: 81 VNKEHLNQITACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHNDLNEGKSS 140
Query: 389 ADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
+ ++ L+V +D +TDPQN+GA+IRSAY GA G++L K++ LS VVSKAS+G+LE+
Sbjct: 141 SSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEV 200
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE---IPP--------GQPTILVLG 497
+ + N M FL +S GW+V+G + A+P N+ P +P ILVLG
Sbjct: 201 FNISHVKNPMVFLRNSVLKGWKVIG---TKPALPDNKDQIYTPHKIKTELMNEPKILVLG 257
Query: 498 SEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVS 557
SE GLR + C+H V IPG +++ V+SLNVS
Sbjct: 258 SE-KGLRTNILTQCSHYVSIPG----------------------GDKY-----VDSLNVS 289
Query: 558 VAAGVLLHHLV 568
VAAG+LL+ LV
Sbjct: 290 VAAGILLYSLV 300
>gi|223646822|gb|ACN10169.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
gi|223672681|gb|ACN12522.1| rRNA methyltransferase 1, mitochondrial precursor [Salmo salar]
Length = 288
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/285 (35%), Positives = 143/285 (50%), Gaps = 42/285 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+GV P L AL+ R + L+V+EG + + +V + A G+ I+
Sbjct: 31 ETLFGVSPCLLALTQGRRNAHRLFVKEG--------EASRRASVRQVCEEAHRQGVPIQR 82
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
SK+DLN + HQGL L AS L + + D LW+ LD V DP NLGA
Sbjct: 83 VSKNDLNKMCSGGVHQGLCLQASCLGFLTDDKTSKPPRDSSHIPLWLVLDGVQDPMNLGA 142
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSAYF G V +NS PL+ VVSKASSG +E+M + +++ L GW+V
Sbjct: 143 ILRSAYFLGVDRVASSLRNSCPLTPVVSKASSGVMEVMRVYGYDSLTDMLKVKLAQGWQV 202
Query: 472 LGGSVSSKA----VPLNEIPPGQ---PTILVLGSEGTGLRPLVERSCTHLVRIPGNIP-V 523
+ G+V ++A VP+ + Q PT+L++G EG GL + C ++ I IP
Sbjct: 203 I-GTVGAEAENAHVPVMKCSKFQMTKPTLLLMGGEGEGLSRELRLQCEVMLTI---IPRR 258
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
D+ G VESLNVSVA G+LLH L+
Sbjct: 259 DLHPG----------------------VESLNVSVATGILLHSLL 281
>gi|156843950|ref|XP_001645040.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
70294]
gi|156115695|gb|EDO17182.1| hypothetical protein Kpol_1072p52 [Vanderwaltozyma polyspora DSM
70294]
Length = 398
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/364 (29%), Positives = 174/364 (47%), Gaps = 78/364 (21%)
Query: 247 RRNSFRRDVKARTEKPEYQRWNR-QENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALS 305
RR+ + K T+ P ++R + N+ + + +A P + E +YG VLAAL
Sbjct: 70 RRSYEKHSAKEETQPPRQSFFDRPRRNANPSRYLQANP------LLEYVYGTNSVLAALQ 123
Query: 306 AKTREFYA-LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
+ RE++ LY L N ++++ + + +T KH+LN++ +
Sbjct: 124 SNKREYFTKLYYHGSLQPDIEN--------------LSKSRSVELVKTDKHNLNLLTKDA 169
Query: 365 PHQGLVLDASPLEMVKIKELDP------------------------ISADEDQASLWVAL 400
H +VL+ PL+ ++I L+ IS + + L V L
Sbjct: 170 VHNNVVLETKPLKPIEINNLETVNTEDCTFQITEQSLIKKTKSIGYISNENKKFPLGVYL 229
Query: 401 DEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQF 460
DEV DP N+GAIIRSAYF GA VV+ KN APLSG V+K SSGS+EL+ + Y + + F
Sbjct: 230 DEVMDPHNVGAIIRSAYFLGADFVVMSRKNCAPLSGTVNKTSSGSMELLPIYYVDKPLTF 289
Query: 461 LV-SSAENGWRVLGGSVSSKAV---------------PLNEIPPGQPTILVLGSEGTGLR 504
SS E GW + ++ + L+ + P +LV+G+E TG+R
Sbjct: 290 FQKSSEEGGWSFISSCITDDIISKDNKFIKNKMLSLEDLSGLCKEFPVVLVVGNENTGIR 349
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
T+L R+ + V++ G D ++D N Q+ V+SLNVSVA +LL
Sbjct: 350 -------TNL-RMRSDFYVEIPFGR--DSESDSNR------QAISTVDSLNVSVATALLL 393
Query: 565 HHLV 568
+ ++
Sbjct: 394 NRIL 397
>gi|47213835|emb|CAG00639.1| unnamed protein product [Tetraodon nigroviridis]
Length = 364
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/309 (33%), Positives = 157/309 (50%), Gaps = 44/309 (14%)
Query: 271 ENSGRTTWKEAAPSTVPKMVG---EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNR 327
E+S R W++ T E ++G+ P L ALS R+ + L+V++G
Sbjct: 85 EDSPREKWQQLRQKTKVDSRSDSHEIVFGIAPCLLALSQGRRKAFKLFVKDG-------- 136
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
+ ++ KV + A + G+ I K+DL+ + R HQG+ L AS L+ + +
Sbjct: 137 EAAERASVLKVCEEAHSRGVQICHVRKNDLDKMSLGRVHQGVCLQASRLDFLTKTTCNSR 196
Query: 388 -SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSL 446
S D ++ LW+ L+E+ DP NLGAI+RSAYF G V S PLS VVSKASSG +
Sbjct: 197 GSKDSNRPPLWLVLEEIQDPMNLGAILRSAYFLGVDRVASSVHRSCPLSPVVSKASSGVM 256
Query: 447 ELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKA----VPL---NEIPPGQPTILVLGSE 499
E+ME+ ++ L GW+V+ GSV ++A +P+ ++ +PT+L++G E
Sbjct: 257 EVMEVYGYESLEDMLRMKVAQGWQVV-GSVGTEAEATHIPIIRCSDFHLTKPTLLLMGGE 315
Query: 500 GTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
G GL + C L+ IP AG F +ESLNVSVA
Sbjct: 316 GEGLSRGLLSLCQALLSIP--------AGR----------------NLFPGIESLNVSVA 351
Query: 560 AGVLLHHLV 568
AG++LH ++
Sbjct: 352 AGIILHSML 360
>gi|426237068|ref|XP_004012483.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Ovis aries]
Length = 360
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 152/309 (49%), Gaps = 44/309 (14%)
Query: 271 ENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK 330
E GR + A P E L+G+ P L AL A R L +Q S R +
Sbjct: 36 EELGRLPLDDLASVPRPAEGPELLFGLSPCLLALQAARRRVARLLLQACRSGLQGQRAE- 94
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
+L+ AE I + + +L+ + ++ HQG+ ++ SPL E +
Sbjct: 95 -------LLRAAEARAIPVLRPRRRELDALCRHQVHQGVCMEVSPLRPRPWAEAEAARPG 147
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
+D LW+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M+
Sbjct: 148 DDPQQLWLVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAMEVMD 207
Query: 451 LRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEG 500
+ +++ FL + A GW V G G + P ++IP +PT+LVLG+EG
Sbjct: 208 VFSTDDLAGFLQARARQGWLVAGTVGCPGPEIAPSSKIPITRCLDFLWDRPTLLVLGNEG 267
Query: 501 TGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
+GL V+ SC L+ I PG Q +ESLNVSVA
Sbjct: 268 SGLSRAVQASCQLLLTILPGR-------------------------QLPPGLESLNVSVA 302
Query: 560 AGVLLHHLV 568
AG+LLH +
Sbjct: 303 AGILLHSIC 311
>gi|296201933|ref|XP_002748208.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Callithrix
jacchus]
Length = 350
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 98/293 (33%), Positives = 146/293 (49%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + VL++AE
Sbjct: 44 VPTSRQELLFGLSPCLLALRAARRYVARLLLQAGKAGLQGERAE--------VLRLAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL + E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDAMCRYQVHQGVCMEVSPLRPLPWIEAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++R A+F G ++ KNS PL+ VVSKAS+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRCAHFLGVDKIITSRKNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G K ++IP QPT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPGPKVPQSSKIPITSSLEFLWDQPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q ESLNVSV AG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGFESLNVSVVAGILLHSIC 304
>gi|363756348|ref|XP_003648390.1| hypothetical protein Ecym_8294 [Eremothecium cymbalariae
DBVPG#7215]
gi|356891590|gb|AET41573.1| Hypothetical protein Ecym_8294 [Eremothecium cymbalariae
DBVPG#7215]
Length = 400
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 113/368 (30%), Positives = 170/368 (46%), Gaps = 79/368 (21%)
Query: 240 SDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGP 299
S +NKR + R ++ E Q+ E+ + A P + E +YG
Sbjct: 72 SGDPYNKRASHVAR----LKQENEDQKRQHMEHKSKFQRDHAYRGLKPNPLLEYVYGTNS 127
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
VLAA+ A RE++ + G+ ++ +A+ +G++++E KH LN+
Sbjct: 128 VLAAMQANKREYFTRLLHYGVL-------------NPQIESLAKQLGVTMEEVDKHRLNI 174
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADE----------DQAS-------------- 395
+ H +VL+A PL+ ++ L + +E DQ +
Sbjct: 175 ITNYGVHNNIVLEAKPLQPSELSHLGLCNPEEGNFEYTEMFLDQPTQKSSMFLSNGNKKF 234
Query: 396 -LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L + LDEV DP N+GAI+RSAYF GA VVL KN APLS V SK SSG++EL+ +
Sbjct: 235 PLGLYLDEVVDPHNIGAILRSAYFLGADFVVLSRKNCAPLSPVTSKVSSGAMELIPIYNT 294
Query: 455 NNMMQFLVSSAE-NGWRVL------GGSVS----SKAVPLNEIPP---GQPTILVLGSEG 500
+ + F S + GW VL G SV+ S+A+ L ++P P ILV+G+EG
Sbjct: 295 DKPLNFFEKSKQYGGWTVLTTCVTTGTSVTQMVKSRAMLLGDLPALLQKTPVILVVGNEG 354
Query: 501 TGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
G+R + + V++P GEI VD SLNVSVA
Sbjct: 355 NGVRTNIMQRSDFFVQVPFG-----RVGEIQSVD------------------SLNVSVAT 391
Query: 561 GVLLHHLV 568
+LLH L+
Sbjct: 392 SLLLHQLL 399
>gi|157819051|ref|NP_001102302.1| rRNA methyltransferase 1, mitochondrial [Rattus norvegicus]
gi|149053705|gb|EDM05522.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 320
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/291 (34%), Positives = 150/291 (51%), Gaps = 44/291 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+GV P L AL A R L +Q G + R + +L++AE GI +
Sbjct: 48 ERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAE--------LLRVAEARGIPVLR 99
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + G + HQG+ ++ S L E S+ +D LW+ L+ + DP+NLGA
Sbjct: 100 PRRQKLDALCGYQVHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGA 159
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSAYF G V+ +NS PL+ VVSKAS+G++E+M++ ++ FL + A+ GW V
Sbjct: 160 VMRSAYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFLQAKAQQGWLV 219
Query: 472 LGG--------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
+G S SSK VP+ E +PT+LVLG+EG+GL V +C L+ I
Sbjct: 220 VGTVGCPGPEISQSSK-VPVTSCLEFIWDRPTLLVLGNEGSGLSQGVFATCQLLLTI--- 275
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
+P G H +ESLNVSVA G+LLH + +
Sbjct: 276 LP--------------GRHLPP-------GLESLNVSVATGILLHSICSQK 305
>gi|148651964|ref|YP_001279057.1| RNA methyltransferase [Psychrobacter sp. PRwf-1]
gi|148571048|gb|ABQ93107.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Psychrobacter sp. PRwf-1]
Length = 261
Score = 142 bits (358), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 86/274 (31%), Positives = 148/274 (54%), Gaps = 30/274 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
YG+ + A LS + + AL++Q+G + ++ + + +E++L++AE MG+SI+E S
Sbjct: 7 FYGIHAIHALLSHRPTDAMALFIQQGRAHKDSSTQDEADSTFEEILQLAEQMGVSIQEAS 66
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L + G+ HQG+VL+A PL M E+ ++ +D +L++ LD++TD NLGA +
Sbjct: 67 RDKLTALCGSPQHQGVVLNARPLAMADEGEIASLAQSDD--ALFLVLDQITDAHNLGACL 124
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G V+ +SA L+ V+K S G++E+M + N+ + + + + G V G
Sbjct: 125 RTAAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQAGVFVYG 184
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
++ + A L ++ +++GSEG G+R L C LV IP GN
Sbjct: 185 TALDATAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGN----------- 233
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
HGS ++SLNVSVA G++L+
Sbjct: 234 ------KHGS---------LQSLNVSVATGMVLY 252
>gi|363741375|ref|XP_001235387.2| PREDICTED: rRNA methyltransferase 1, mitochondrial [Gallus gallus]
Length = 375
Score = 142 bits (358), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 97/294 (32%), Positives = 152/294 (51%), Gaps = 42/294 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+GV P ALS R+ + L+++ S ++ E VL+ A G+ +
Sbjct: 113 EILFGVAPCSMALSQARRDLFRLFLKR----SGGPQRLVTS---EFVLQAAAR-GVPVLH 164
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD-PISADEDQAS---LWVALDEVTDPQ 407
+ +L+ + G R HQG+ L+A+PL +++E + P D + + LW+AL+++ DP
Sbjct: 165 VGRRELDTLCGGRVHQGVCLEATPLRFKRLEEAEEPGLGDGESPNRQLLWLALEQIQDPM 224
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA++RSAYF G VV +NS PL+ VSKASSG++E+ ++ +++ FL + A
Sbjct: 225 NLGALLRSAYFLGVDRVVTSQRNSCPLTPTVSKASSGAMEVFDVYSTDDLRSFLKAKAAE 284
Query: 468 GWRVLGGSVSSKA---VPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNI 521
GW V+G S+ VP+ E +P ILV+GSEG GL + C ++ IP
Sbjct: 285 GWEVVGTVSQSETVENVPVISCLEFRWNKPIILVIGSEGDGLSLETQLLCHQMLVIP--- 341
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
S +ESLNVSVA G+LLH + ++ N+
Sbjct: 342 -------------------SGRALHP--GIESLNVSVATGILLHSICSQKLRNS 374
>gi|403274740|ref|XP_003929121.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Saimiri
boliviensis boliviensis]
Length = 350
Score = 142 bits (357), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 95/293 (32%), Positives = 144/293 (49%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R + +Q G + R + +L+MAE
Sbjct: 44 VPTSRQELLFGLSPCLLALRAARRYVARVLLQAGKTGLQGERAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDAMCRYQVHQGVCMEVSPLRPRPWTEAGDASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G ++ +NS PL+ VVSKAS+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKIITSRRNSCPLTPVVSKASAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G K +E+P +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPGPKVPQSSEVPITSSLEFLWDRPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I P+ ESLNVSV AG+LLH +
Sbjct: 276 TILPRRPLPP------------------------GFESLNVSVVAGILLHSIC 304
>gi|403213515|emb|CCK68017.1| hypothetical protein KNAG_0A03300 [Kazachstania naganishii CBS
8797]
Length = 393
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 106/311 (34%), Positives = 154/311 (49%), Gaps = 69/311 (22%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG VLAAL R++Y+ L S+ + K E+V+K E + I +
Sbjct: 115 EYVYGTNCVLAALHNPNRQYYS-----RLLYSTGHVNPK----IEEVIKERE-IEIECTK 164
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD-------ED------------ 392
T KH+LN++ N H G+VL+ P+E + L + + ED
Sbjct: 165 TDKHELNLLTKNGAHNGVVLETKPIEPKDLSYLGVVHPENPTFEVIEDAGLSTVKYVDSG 224
Query: 393 --QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
Q L V LDE+TDP NLGAIIRSAY+ GA +V+ N APLS VV+KASSG++E M
Sbjct: 225 TKQFPLGVYLDEITDPHNLGAIIRSAYYLGADFLVVSQSNCAPLSPVVNKASSGAMEFML 284
Query: 451 LRYCNNMMQFLVSSAE-NGWRVLGGSVSSKA---------VPLNE---IPPGQPTILVLG 497
+ +N ++F S + GW + G ++ A +P+ E +P PTIL++G
Sbjct: 285 VYSVDNPVEFAAKSQDVGGWTFVAGHLADPAKKGQYDGKNIPMTELSTLPTRSPTILMVG 344
Query: 498 SEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVS 557
+EG G+R + LV+IP P D+ V+SLNVS
Sbjct: 345 NEGAGVRSALRTKSDFLVQIPTARP-----------DS--------------PVDSLNVS 379
Query: 558 VAAGVLLHHLV 568
VA +LL+HL+
Sbjct: 380 VATALLLNHLL 390
>gi|333368640|ref|ZP_08460812.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
sp. 1501(2011)]
gi|332976662|gb|EGK13502.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Psychrobacter
sp. 1501(2011)]
Length = 262
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 148/275 (53%), Gaps = 31/275 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLS-LSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
YG+ + A L+ + + AL+VQ+G S NN ++ +E++L++AE MG+SI++
Sbjct: 7 FYGIHAIHALLTHRPTDAMALFVQQGRSGKEGNNAAEEADSTFEEILQLAEQMGVSIQQA 66
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
S+ L + G+ HQG+VL+A PL M E+ ++ ED +L++ LD++TD NLGA
Sbjct: 67 SRDKLTALCGSPQHQGVVLNARPLAMADEGEIATLAKAED--ALFLVLDQITDAHNLGAC 124
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A G V+ +SA L+ V+K S G++E+M + N+ + + + ++G V
Sbjct: 125 LRTAAAMGVDAVICPKHHSASLTPTVAKVSVGAMEIMPVIAVTNLARCIENLKQSGVFVY 184
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEI 530
G ++ A L ++ +++GSEG G+R L C LV IP GN
Sbjct: 185 GTALDETAKALPDVDLKGKVAIIMGSEGEGMRRLTTERCDELVYIPMTGN---------- 234
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
HGS ++SLNVSVA G++L+
Sbjct: 235 -------KHGS---------LQSLNVSVATGMVLY 253
>gi|320581168|gb|EFW95389.1| Ribose methyltransferase [Ogataea parapolymorpha DL-1]
Length = 378
Score = 141 bits (356), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 126/410 (30%), Positives = 193/410 (47%), Gaps = 85/410 (20%)
Query: 192 RSLEESTKTFSRTEEHRERVVDMSTG---HRNVYAKNQGTAEEEGEEMEAVSDSKWNKRR 248
RSL F + H + V HR V A E + E+ E+ W KR+
Sbjct: 14 RSLNGPVAPFKSDKAHNKGAVTFDRNFPVHRRVKA-----WERDREDKES-----WFKRK 63
Query: 249 NSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKT 308
++ A+ +K E QR + E + ++ + E LYG PVLAAL A+
Sbjct: 64 HAHHH---AKQKKREPQRDEKPEFTRSQALRKTISQLKLNPLVEYLYGTNPVLAALKAQQ 120
Query: 309 RE-FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVGNRPH 366
RE F LY+ +N K K ++L +A + + +K E KHDLN++ N H
Sbjct: 121 RESFGTLYL--------HNPKSTPK--LAEILALARELELPVKSEYGKHDLNLMTNNGVH 170
Query: 367 QGLVLDASPLEMVKIKEL------------DPISADEDQAS--------LWVALDEVTDP 406
G+V++ P+E+ +++ L + + A E S L + +DE++DP
Sbjct: 171 NGIVVETKPIEVEQLRCLAASEIGKFTVTKEHVGATESSVSSTAAERYPLALYIDEISDP 230
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
N+GAI+RSAYF G +V+ +N APLS VVSK SSG+LE + + ++F S
Sbjct: 231 HNMGAILRSAYFLGVDCIVVSERNCAPLSPVVSKTSSGALEFLPIYSSQKPLRFFEESRS 290
Query: 467 NGWRVL-------GGSVSSKAVPLNEIPPGQ----PTILVLGSEGTGLRP-LVERSCTHL 514
NGW ++ G + SK + + + GQ P +LV+GSEG G+R L++RS
Sbjct: 291 NGWTIISSVAPSESGRMGSKQIDADTL-KGQLQNGPCMLVVGSEGQGIRTSLLQRS---- 345
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ V V +G D+D +V+SLN SVA +LL
Sbjct: 346 -----DFLVSVNSGRA-DLDE--------------SVDSLNASVATALLL 375
>gi|194217234|ref|XP_001917920.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Equus
caballus]
Length = 355
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/310 (33%), Positives = 152/310 (49%), Gaps = 46/310 (14%)
Query: 271 ENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK 330
E R + AP+ + E L+G+ P L AL A R L +Q G S R +
Sbjct: 31 EELSRLRLDDLAPTVRSETGLELLFGLSPCLLALQAARRRVARLLLQAGRSGLQGERAE- 89
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
+L+ AE I + + L+ + + HQG+ ++ SPL + E
Sbjct: 90 -------LLRAAEAQDIPVLRPRRKQLDALCHYQVHQGVCMEVSPLRPLPWTESREARPG 142
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
+D LW+ L+ + DP+NLGA++RSAYF G V+ +NS PL+ VVSKAS+G++E+M+
Sbjct: 143 DDPQQLWLILEGLQDPRNLGAVLRSAYFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMD 202
Query: 451 LRYCNNMMQFLVSSAENGWRVLG--------GSVSSKAVPLN---EIPPGQPTILVLGSE 499
+ +++ FL A GW V G S+SS+ +P+ E QPT+LVLG+E
Sbjct: 203 VFSTDDLAGFLQVKARQGWLVAGTVGCPGPETSLSSE-MPITSCLEFVWDQPTLLVLGNE 261
Query: 500 GTGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSV 558
G+GL V+ SC L+ I PG Q +ESLNVSV
Sbjct: 262 GSGLSQEVQASCQVLLTILPGR-------------------------QLPPGLESLNVSV 296
Query: 559 AAGVLLHHLV 568
A G+LLH +
Sbjct: 297 ATGILLHSIC 306
>gi|406606500|emb|CCH42109.1| putative tRNA/rRNA methyltransferase [Wickerhamomyces ciferrii]
Length = 492
Score = 140 bits (352), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 105/363 (28%), Positives = 171/363 (47%), Gaps = 80/363 (22%)
Query: 253 RDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG-------EGLYGVGPVLAALS 305
RD K +KP Y R + + R E+ + G + LYG V AAL
Sbjct: 165 RDDKRSFDKPRYDRRSESKYDTRDDGYESKSYSRNPYSGLKTSPLSDFLYGSSAVYAALK 224
Query: 306 AKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNR 364
+ REF+ L N K +D +K+L +A + I IKE+ K++LN++ N
Sbjct: 225 SNKREFFT-------KLLYYNYKIED----QKILDLASKLKIPIKESKDKNELNILTNNS 273
Query: 365 PHQGLVLDASPL------EMVKIKELD---PISADE------------DQASLWVALDEV 403
H G+VL+ PL E+ K +D + D+ + L V LDEV
Sbjct: 274 VHNGIVLETKPLIPDTILELGKFNTVDGTYSVGHDDLGDLVSKYHTSSNPFPLGVYLDEV 333
Query: 404 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
+DP N+GAIIRSAYF G +++ +KNS+ ++ V K SSG+ E + + ++ ++FL +
Sbjct: 334 SDPHNVGAIIRSAYFLGVDFIIVSSKNSSGITPAVVKTSSGASEFIPIYKVDSPLKFLNN 393
Query: 464 SAENGWRVLGG-------------SVSSKAVPLNEIPP---GQPTILVLGSEGTGLRPLV 507
S+E GW+++ ++ KA+ N++ PT+LV+GSEG G+R +
Sbjct: 394 SSEKGWKIISSGQASHPKDSKINKTLEQKALHFNDLDQLLIKSPTLLVVGSEGDGIRTTI 453
Query: 508 ERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ ++V I VD T ++SLNVSVA+ +++ L
Sbjct: 454 KLRSDYIVEIEKGNNVDPT------------------------IDSLNVSVASALMIKQL 489
Query: 568 VGH 570
+ +
Sbjct: 490 MSY 492
>gi|417399631|gb|JAA46808.1| Putative rrna methylases translation [Desmodus rotundus]
Length = 359
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 86/248 (34%), Positives = 132/248 (53%), Gaps = 36/248 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE GI + + L+ + HQG+ ++ SPL E +D L
Sbjct: 93 ELLRVAEARGIPVLRPRRQKLDALCRYEVHQGVCMEVSPLRPRPWTEAGEARPGDDPQQL 152
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ + ++
Sbjct: 153 WLVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGAVEVMDVFFTDD 212
Query: 457 MMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPL 506
+ FL + A GW V G G + P +E+P +PT+LVLG+EG+GL P
Sbjct: 213 LDGFLQAKARQGWLVAGTVGCPGPEIFPSSEVPITSCLEFLWDRPTLLVLGNEGSGLSPE 272
Query: 507 VERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V+ SC L+ I PG Q +ESLNVSVAAG+LLH
Sbjct: 273 VQASCQLLLTILPGR-------------------------QLPPGLESLNVSVAAGILLH 307
Query: 566 HLVGHQVS 573
+ + S
Sbjct: 308 SICSQRKS 315
>gi|50290571|ref|XP_447717.1| hypothetical protein [Candida glabrata CBS 138]
gi|49527027|emb|CAG60662.1| unnamed protein product [Candida glabrata]
Length = 384
Score = 138 bits (347), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 95/313 (30%), Positives = 145/313 (46%), Gaps = 67/313 (21%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E LYGV P+LAAL + R ++ + + +N+ +L++ + GI I
Sbjct: 105 LSEYLYGVNPILAALESDRRGYFTRLLHHDTNDKDSNK--------LTILRLCKEKGIKI 156
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE--------DQASLW---- 397
KH LN++ + H +VL+ PL + +I L ++ D D + W
Sbjct: 157 DTADKHQLNLITKSAVHNNMVLECKPLSIPEINSLQNVNIDTASFNVLQTDGITQWSKSE 216
Query: 398 -------------VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
+ LDEVTDP N+GAIIRSA+F GA V L KN A + VV+K SSG
Sbjct: 217 KFHNNERKKYPVGIYLDEVTDPHNMGAIIRSAFFLGADFVALSRKNCAAIGPVVAKTSSG 276
Query: 445 SLELMELRYCNNMMQFLVSSAENGWRVLGGS--VSSKAVP-------LNEIPPGQPTILV 495
+++ + + Y + ++F S GW V+ S S K V L+ + P +LV
Sbjct: 277 AVDYLPMFYVDKPLKFFELSQAEGWTVVSSSHGHSKKDVAKTLDLGDLHNMSHSMPILLV 336
Query: 496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLN 555
+G+E +G+R +++ LV IP Q + V+SLN
Sbjct: 337 MGNEYSGIRTNLKQRSDFLVAIP-------------------------QMTNNSTVDSLN 371
Query: 556 VSVAAGVLLHHLV 568
VSVA G+LL LV
Sbjct: 372 VSVATGILLSKLV 384
>gi|262197042|ref|YP_003268251.1| TrmH family RNA methyltransferase [Haliangium ochraceum DSM 14365]
gi|262080389|gb|ACY16358.1| RNA methyltransferase, TrmH family, group 3 [Haliangium ochraceum
DSM 14365]
Length = 267
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 99/285 (34%), Positives = 142/285 (49%), Gaps = 47/285 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG--YEKVLKMAENMGISIKE 351
+YGVGPV L + RE LYV + +R+ + + G V + A G+S++E
Sbjct: 7 VYGVGPVEELLGRRAREIAVLYV-------NPSRRSRQRAGDPVAAVAEQARRRGVSVEE 59
Query: 352 TSKHDLNMVVGNRP---------HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDE 402
S+ L+ +V R HQG+V E +++L I+A + +L+VALD
Sbjct: 60 LSREQLDALVAGRGDAEDGGRVHHQGVVALVGAFEYAALEDL--IAAPRQRPALFVALDS 117
Query: 403 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLV 462
VTDP NLGAI+RSA+ GA GV+L +A +SGVV+K S+G+ E + + N+ + L
Sbjct: 118 VTDPHNLGAIVRSAHVLGADGVILPKDRAAQVSGVVTKVSAGATEQIAIAQVTNLARALE 177
Query: 463 SSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIP 522
+ + G + A L LVLG+EGTGLRPLV R+C L+ IP
Sbjct: 178 QLKQAEVWIAGLAAGEGATSLPAFDATGALCLVLGAEGTGLRPLVARTCDFLIEIP---- 233
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ AG V SLNVSVAAGV L+ +
Sbjct: 234 -MLGAG----------------------VGSLNVSVAAGVALYEV 255
>gi|126307628|ref|XP_001370730.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like
[Monodelphis domestica]
Length = 425
Score = 136 bits (343), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/309 (32%), Positives = 161/309 (52%), Gaps = 49/309 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+G+ P AL A R L +Q+G+ + S R + V + AE +GI ++
Sbjct: 120 EILFGLAPCTLALRAARRAVTRLLLQKGV-VGSGPRAE--------VARDAEALGIPVQL 170
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS--LWVALDEVTDPQNL 409
+ +L+ + + HQGL ++ +PL E ED AS LW+ L+E+ DP+NL
Sbjct: 171 MRRRELDALCRGQIHQGLCMEVAPLLPKAWPEGRENEPREDPASRRLWLILEEIQDPRNL 230
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +++ L A+ GW
Sbjct: 231 GAVLRSAHFLGVDKVITSRRNSCPLTPVVSKASAGTMEVMDVFATDDLPGLLKVKAQQGW 290
Query: 470 RVLG-----GSVSSKA--VPLN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI-P 518
V G GSV + +P+ E + T+LVLG+EG+GL + C L+ I P
Sbjct: 291 LVAGTVGCPGSVVPQCSDIPITSCLEFLWDRSTLLVLGNEGSGLSHEIRNLCHILLTILP 350
Query: 519 G-NIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSH 577
G +P + VESLNVSVAAG+LLH ++ + +S
Sbjct: 351 GRELPPE--------------------------VESLNVSVAAGILLHSIISQRKGQDSL 384
Query: 578 IEDSSTATV 586
+++ + A +
Sbjct: 385 LKEETRAVL 393
>gi|145230059|ref|XP_001389338.1| RNA methyltransferase, TrmH family [Aspergillus niger CBS 513.88]
gi|134055453|emb|CAK43968.1| unnamed protein product [Aspergillus niger]
gi|350638406|gb|EHA26762.1| hypothetical protein ASPNIDRAFT_35811 [Aspergillus niger ATCC 1015]
Length = 497
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 102/338 (30%), Positives = 151/338 (44%), Gaps = 70/338 (20%)
Query: 283 PSTVPKMV--GEGLYGVGPVLAALSAKTREFYALYV--QEGLSLSSNNRKKKDKKGYEKV 338
PS+VP + +YG+ +AAL R Y LY+ EG LS +KK K
Sbjct: 173 PSSVPYTTPASQFVYGISACMAALRCSRRRIYKLYIYQSEGRELSP------EKKALRK- 225
Query: 339 LKMAENMGISIKETS-KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE------ 391
L + +N+ + + S L+ + RPHQG +L+ SPL + ++ P+ + E
Sbjct: 226 LALLKNVTVKMAFASWGRLLDQMSDGRPHQGCILEVSPLPRLPVQNFRPVPSPEADNFGL 285
Query: 392 --------------------------DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
+ + + LD + DP NLGAIIRSAY+ GA +V
Sbjct: 286 ELGAQSREEAQVNTTNNTVDINNTFGKRYPVVILLDGIVDPGNLGAIIRSAYYLGADAIV 345
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
+NSA +S VV KAS+G+ ELM L + N + F+ S +NGWR K
Sbjct: 346 FAGRNSAEISPVVLKASAGAAELMTLLHVRNEVDFIRRSKDNGWRFYAADAPGKGSTSTY 405
Query: 486 IPPGQ----------PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
I P + P+++++GSEGTGL P + ++ IPG E D
Sbjct: 406 IDPAEFGNGAPVAQAPSVIMMGSEGTGLSPHILSQADAVIGIPGAKFSPELGAESDPA-- 463
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V+SLNVSVAA +L++ + VS
Sbjct: 464 --------------RVDSLNVSVAAALLMNMFLRVPVS 487
>gi|432925222|ref|XP_004080704.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Oryzias
latipes]
Length = 394
Score = 136 bits (342), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 97/284 (34%), Positives = 140/284 (49%), Gaps = 43/284 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++GV P AL+ R+ L+V+ G + + KV + A G+ +
Sbjct: 139 EIVFGVSPCFLALTQGRRKASRLFVKAG--------EASLRASVLKVCEEAHQQGVPVSR 190
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
SK DL+ + HQG+ L ASPL + D + LW+ L+ + DP NLGA
Sbjct: 191 VSKKDLDRMSSGGVHQGVCLAASPLGYLTE---DWTVSGGPSTPLWLVLERIQDPMNLGA 247
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSAYF G V+ ++S PLS VVSKASSG++E+M + C N+ + L GW V
Sbjct: 248 ILRSAYFLGVDRVISSLRHSCPLSPVVSKASSGAMEVMGVYGCENLEEMLKLKLAQGWHV 307
Query: 472 LGGSVSSKAVPLN-------EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
+ G+V +AV N E +PT+L++G EG GL + C + I
Sbjct: 308 V-GTVGHQAVDSNIRVTQCLEFQITKPTLLLMGGEGHGLSAELLSLCQTFLSI------- 359
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
TAG+ + +ESLNVSVAAG+LLH L+
Sbjct: 360 -TAGK----------------ELPPGIESLNVSVAAGILLHSLL 386
>gi|345805292|ref|XP_852880.2| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
mitochondrial [Canis lupus familiaris]
Length = 353
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 154/309 (49%), Gaps = 42/309 (13%)
Query: 269 RQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRK 328
R E R + AP++ E L+G+ P L AL A R L +Q G S R
Sbjct: 29 RGEELSRLLLDDLAPTSRSPRGLELLFGLAPCLLALRAARRRVARLLLQAGRSGLQGERA 88
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
+ +L+ AE I + + L+ + ++ HQG+ ++ SPL+ E++
Sbjct: 89 E--------LLREAEARDIPVLRPRRQKLDALCRHQVHQGVCMEVSPLKPRPWTEVEEAR 140
Query: 389 ADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
+D LW+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+
Sbjct: 141 PGDDPRRLWLVLERLQDPRNLGAVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEV 200
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP--------GQPTILVLGSEG 500
M++ +++ FL + A GW V G + +EIP QPT+LVLG+EG
Sbjct: 201 MDVFSTDDLAGFLQAKARQGWLVAGTVGCPRPEMSSEIPITSCLEFLWDQPTLLVLGNEG 260
Query: 501 TGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
+GL V+ SC L+ I PG Q +ESLNVSVA
Sbjct: 261 SGLSQAVQASCQLLLTILPGR-------------------------QLPPGLESLNVSVA 295
Query: 560 AGVLLHHLV 568
AG+LLH +
Sbjct: 296 AGILLHSIC 304
>gi|301776018|ref|XP_002923430.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Ailuropoda
melanoleuca]
Length = 360
Score = 135 bits (340), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 99/298 (33%), Positives = 152/298 (51%), Gaps = 46/298 (15%)
Query: 284 STVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKM 341
++ P+ G E L+G+ P L AL A R L +Q G S R + +L+
Sbjct: 47 ASTPRSAGRLELLFGLSPCLLALRAARRRVARLLLQAGRSGLQGERAE--------LLRA 98
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
AE I + + L+ + ++ HQG+ ++ SPL+ E+ +D LW+ L+
Sbjct: 99 AEARDIPVLRPRRQKLDALCRSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLVLE 158
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
+ DP+NLGA++RSA+F G ++ +NS PL+ VVSKAS+G++E+M++ +++ FL
Sbjct: 159 RIQDPRNLGALLRSAHFLGVDKIITSGRNSCPLTPVVSKASAGAMEVMDVFSTDDLAGFL 218
Query: 462 VSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSC 511
+ A GW V G G + P +EIP +PT+LVLG+EG+GL V+ SC
Sbjct: 219 QAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGLSQAVQASC 278
Query: 512 THLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
L+ I PG Q +ESLNVSVAAG+LLH +
Sbjct: 279 QLLLTILPGR-------------------------QLPPGLESLNVSVAAGILLHSIC 311
>gi|348567440|ref|XP_003469507.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Cavia
porcellus]
Length = 454
Score = 135 bits (339), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 82/240 (34%), Positives = 134/240 (55%), Gaps = 33/240 (13%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE I + + L+ + + HQG+ ++ +PL E +S ++D L
Sbjct: 194 ELLRVAEARDIPVLRPRRQKLDALCHYQVHQGVCMEVTPLRPRPYTEAGDVSPNDDPQQL 253
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++R+A+F G ++ +NS PL+ VVSKAS+G++E+M++ ++
Sbjct: 254 WLVLEGLQDPRNLGAVLRTAHFLGVDKIITSRRNSCPLTPVVSKASAGAMEVMDVFCSDD 313
Query: 457 MMQFLVSSAENGWRVLG--GSVSSKA--VPLN---EIPPGQPTILVLGSEGTGLRPLVER 509
+ FL + A GW V G GSV S+A +P+ E +PT+LVLG+EG+GL V+
Sbjct: 314 LAGFLQAKARQGWLVAGTVGSVVSQASEIPITSCLEFLWDRPTLLVLGNEGSGLSQEVQA 373
Query: 510 SCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+C L+ + PG Q +ESLNVSVAAG+LLH +
Sbjct: 374 ACRLLLSVLPGR-------------------------QLPPGLESLNVSVAAGILLHSIC 408
>gi|346468197|gb|AEO33943.1| hypothetical protein [Amblyomma maculatum]
Length = 356
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 151/304 (49%), Gaps = 45/304 (14%)
Query: 283 PSTVPK--MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P+ PK + E ++G+ PVL AL A+ R Y LYV EG +SS+ ++ E +L
Sbjct: 72 PNQQPKANLGDERVFGLHPVLLALRARRRVLYELYVGEG-KVSSSEVLQRSPLLLE-ILN 129
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEM-VKIKELDPISADEDQAS---- 395
A+ G+S+ S + L + HQG+ LDAS L + + LD + E +AS
Sbjct: 130 AAKEQGLSVSRCSNNHLKQLCSGGTHQGVCLDASKLPVPLGDSLLDKLDNHELEASERKP 189
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
LW+ +D V DP N GA++RS+ +FG V + +S S VSKASSG+LE+ME+
Sbjct: 190 LWLYMDRVQDPMNFGAVLRSSCYFGVQKVFAPSIDSCRPSPTVSKASSGALEMMEMYTLQ 249
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAV-----------PLNEIPP-GQPTILVLGSEGTGL 503
+FL+ GW ++G S S V P ++PP + +L++G+EG G+
Sbjct: 250 TPAKFLMELKARGWWIVGTSSFSDQVRHGGQDGGAHAPTWDLPPPDRAVMLIVGNEGQGM 309
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVL 563
P V C D + +G E + SLNVSVAAG++
Sbjct: 310 LPEVSALC-------------------DSIICVAPYGGQES-----PIGSLNVSVAAGIV 345
Query: 564 LHHL 567
LHHL
Sbjct: 346 LHHL 349
>gi|444720996|gb|ELW61756.1| rRNA methyltransferase 1, mitochondrial [Tupaia chinensis]
Length = 328
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 89/263 (33%), Positives = 140/263 (53%), Gaps = 27/263 (10%)
Query: 271 ENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK 330
E R + AP+ P++ E L+G+ P L AL A R L +Q G + R +
Sbjct: 34 EELSRLRLDDLAPA--PRL--ELLFGLSPCLLALRATRRRVARLLLQAGRAGLQGERAE- 88
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
+L++AE GI + + L+ + ++ HQG+ ++ SP+ E + +
Sbjct: 89 -------LLRVAEARGIPVLRPRRQKLDALCRHQVHQGVCMEVSPMYPKPWTEASEATPE 141
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
+ LW+ L E+ DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M+
Sbjct: 142 DCPQRLWLVLQELQDPRNLGAVLRSAHFLGVDKVITSQRNSCPLTPVVSKASAGAMEVMD 201
Query: 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI------------LVLGS 498
+ +++ FL + A GW V G+V+ P + PP PTI LVLG+
Sbjct: 202 VFSTDDLAGFLQAKARQGWLV-AGTVACLG-PESAQPPKTPTISCLEFLWDRPTLLVLGN 259
Query: 499 EGTGLRPLVERSCTHLVRI-PGN 520
EG+GL P V+ SC L+ I PG
Sbjct: 260 EGSGLSPEVQASCQLLLTILPGR 282
>gi|348605253|ref|NP_001231751.1| mitochondrial rRNA methyltransferase 1 homolog [Sus scrofa]
Length = 361
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/243 (34%), Positives = 129/243 (53%), Gaps = 36/243 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE I + + L+++ + HQG+ ++ SPL E +D L
Sbjct: 94 ELLRVAEARDIPVLRPRRRKLDVLCRYQVHQGVCMEVSPLRPQPWAEAGESRPGDDPQQL 153
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G V+ KNS PL+ VVSKAS+G++E+M++ ++
Sbjct: 154 WLVLEGLQDPRNLGAVLRSAHFLGVEKVITSRKNSCPLTPVVSKASAGAMEVMDVFSTDD 213
Query: 457 MMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPL 506
+ FL + A GW V G G + P +E+P QPT+LVLG+EG+GL
Sbjct: 214 LAGFLQAKARQGWLVAGTVGCPGPEISPSSEVPITSCLDFLWDQPTLLVLGNEGSGLSRE 273
Query: 507 VERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V+ SC L+ I PG Q +ESLNVSVAAG+LLH
Sbjct: 274 VQASCQLLLTILPGR-------------------------QLPPGLESLNVSVAAGILLH 308
Query: 566 HLV 568
+
Sbjct: 309 SIC 311
>gi|427797195|gb|JAA64049.1| Putative rrna methylases translation, partial [Rhipicephalus
pulchellus]
Length = 374
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/293 (32%), Positives = 149/293 (50%), Gaps = 43/293 (14%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE ++G+ PVL AL A+ R Y L+V EG LS NR ++ ++L +A+ + +
Sbjct: 103 GEHVFGLHPVLLALRARKRILYELHVDEG-KLSKANRLEQSPL-LLQILDLAKEQELPVS 160
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVK----IKELDPISADEDQA-SLWVALDEVTD 405
++ L+ HQG+ LDAS L ++ + LD E+ LW+ +D + D
Sbjct: 161 GCPQNRLHQWCSGANHQGVCLDASQLPVLHGETLLGSLDKSDVGENPGRPLWLFMDRIQD 220
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P N GA++RS+ +FG V + +K+S LS VSKASSG+LELM+L N Q ++
Sbjct: 221 PMNFGAVLRSSCYFGVQKVFVPSKDSCRLSPTVSKASSGALELMDLYILNTPEQSIMELK 280
Query: 466 ENGWRVLGGSV---SSKAVPLNE--------IPPGQPTILVLGSEGTGLRPLVERSCTHL 514
GW ++G S S++ NE PP +P +L++G+EG G++ + C +
Sbjct: 281 AKGWWIVGTSSFYDSTRHASHNESLKLTWDLPPPDKPVLLIVGNEGQGIQSELSALCDSV 340
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ + PV GE + SLNVSVA G++LHHL
Sbjct: 341 LCV---APV----GEDSPIG------------------SLNVSVATGIVLHHL 368
>gi|297183499|gb|ADI19629.1| rRNA methylases [uncultured delta proteobacterium HF0770_45N15]
Length = 280
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/276 (33%), Positives = 137/276 (49%), Gaps = 42/276 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG VLAAL K R+ L++++ S R + +++ A+ G+ I
Sbjct: 21 EWLYGTHSVLAALRHKRRKLVGLHLKD----SGQGR-------LQALVEAAKKSGVPIHY 69
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ + +G HQG+ L PL ++ EL P + + +L LD V DP NLGA
Sbjct: 70 EASRWFSDNLGESVHQGVALQCGPLSLLDEAELPP--PNSGKPNLVFVLDGVEDPHNLGA 127
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+R+ FFG S V + +A LS V +KAS G+LE + N+ +FL + G+ V
Sbjct: 128 IVRTLGFFGVSAVAIPKDRAAALSPVAAKASVGALEWFSVVRVTNLHRFLERQKKRGYWV 187
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G +S+ PL ++ +P ++VLG+EG+GLRPL +R+C LV IPG
Sbjct: 188 VGLDGASRN-PLRQLEWDRPLMVVLGAEGSGLRPLTKRTCDWLVSIPGT----------- 235
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLNVS AA V +HL
Sbjct: 236 -----------------PEVESLNVSNAAAVTCYHL 254
>gi|148683794|gb|EDL15741.1| mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
musculus]
Length = 358
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 87/246 (35%), Positives = 133/246 (54%), Gaps = 36/246 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE GI + + L+ + G + HQG+ ++ SPL E S+ +D L
Sbjct: 123 ELLRVAEARGIPVLRPRRQKLDALCGYQVHQGVCMEVSPLRPRPCDEAADTSSGDDPQQL 182
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +
Sbjct: 183 WLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPD 242
Query: 457 MMQFLVSSAENGWRVLGG--------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRP 505
+ FL + A+ GW V+G S SSK VP+ E +PT+LVLGSEG+GL
Sbjct: 243 LPGFLQAKAQQGWLVVGTVGCPGPEISQSSK-VPITSCLEFVWDRPTLLVLGSEGSGLSQ 301
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SC L+ I +P + +ESLNVSVA G+LLH
Sbjct: 302 EVFASCQLLLTI---LP---------------------RRHLPPGLESLNVSVATGILLH 337
Query: 566 HLVGHQ 571
+ +
Sbjct: 338 SICSQK 343
>gi|89337263|ref|NP_663408.2| rRNA methyltransferase 1, mitochondrial precursor [Mus musculus]
gi|123796682|sp|Q99J25.2|MRM1_MOUSE RecName: Full=rRNA methyltransferase 1, mitochondrial; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|74208629|dbj|BAE37571.1| unnamed protein product [Mus musculus]
gi|74208738|dbj|BAE37607.1| unnamed protein product [Mus musculus]
gi|112180309|gb|AAH05625.2| Mitochondrial rRNA methyltransferase 1 homolog (S. cerevisiae) [Mus
musculus]
Length = 320
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 36/246 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE GI + + L+ + G + HQG+ ++ SPL E S+ +D L
Sbjct: 85 ELLRVAEARGIPVLRPRRQKLDALCGYQVHQGVCMEVSPLRPRPCDEAADTSSGDDPQQL 144
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +
Sbjct: 145 WLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPD 204
Query: 457 MMQFLVSSAENGWRVLGG--------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRP 505
+ FL + A+ GW V+G S SSK VP+ E +PT+LVLGSEG+GL
Sbjct: 205 LPGFLQAKAQQGWLVVGTVGCPGPEISQSSK-VPITSCLEFVWDRPTLLVLGSEGSGLSQ 263
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SC L+ I +P H +ESLNVSVA G+LLH
Sbjct: 264 EVFASCQLLLTI---LPR--------------RHLPP-------GLESLNVSVATGILLH 299
Query: 566 HLVGHQ 571
+ +
Sbjct: 300 SICSQK 305
>gi|155371979|ref|NP_001094596.1| rRNA methyltransferase 1, mitochondrial [Bos taurus]
gi|154425820|gb|AAI51495.1| MRM1 protein [Bos taurus]
gi|296477019|tpg|DAA19134.1| TPA: mitochondrial rRNA methyltransferase 1 homolog [Bos taurus]
Length = 360
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 160/319 (50%), Gaps = 50/319 (15%)
Query: 265 QRWNRQ--ENSGRTTWKEAAPSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGL 320
+RW R E GR + A ++P+ G E L+G+ P L AL A R L +Q
Sbjct: 28 RRWGRPGGEELGRLPLDDLA--SMPRSAGGPELLFGLSPCLLALRAARRRVARLLLQACR 85
Query: 321 SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVK 380
S R + +L+ AE I + + +L+++ ++ HQG+ ++ SPL
Sbjct: 86 SGLQGQRAE--------LLRAAEERAIPVLRPRRRELDVLCRHQVHQGVCMEVSPLRPRP 137
Query: 381 IKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK 440
E + +D LW+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSK
Sbjct: 138 WAEAEVARPGDDPQQLWLVLEGLQDPRNLGAVLRSAHFLGVDKVITSRRNSCPLTPVVSK 197
Query: 441 ASSGSLELMELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQ 490
AS+G++E+M++ +++ FL + A GW V G G + ++IP +
Sbjct: 198 ASAGAMEVMDVFSTDDLAGFLQARARQGWLVAGTVGCPGPEIALSSKIPVTRCLDFLWDR 257
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
PT+LVLG+EG+GL V+ SC L+ I PG Q
Sbjct: 258 PTLLVLGNEGSGLSRAVQASCQLLLTILPGR-------------------------QLPP 292
Query: 550 AVESLNVSVAAGVLLHHLV 568
+ESLNVSVAAG+LLH +
Sbjct: 293 GLESLNVSVAAGILLHSIC 311
>gi|330844482|ref|XP_003294153.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
gi|325075433|gb|EGC29321.1| hypothetical protein DICPUDRAFT_9482 [Dictyostelium purpureum]
Length = 224
Score = 130 bits (328), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 128/250 (51%), Gaps = 38/250 (15%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K+ +++ + A + I I + + N+PHQG++LD SPL ++ I L P A
Sbjct: 1 KNLDAIKEIAEKANELKIPIIAIKNNIMESFSKNKPHQGVILDCSPLTVLNIDFLKPFKA 60
Query: 390 DED--QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+++ + LW+ LDE+ DPQN+G IIRS FF G+V+ K S P++ SK SSG++E
Sbjct: 61 NKNTKRYPLWIVLDELWDPQNVGTIIRSCSFFNVDGIVISDKCSNPITPTASKCSSGAVE 120
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLG-----GSVSSKAVPLN----EIPPGQPTILVLGS 498
+ ++ FL+SS +NGW ++ S + P N ++ QPTIL+LG+
Sbjct: 121 NYLVHKSESINGFLLSSKKNGWNIVATSVDDNSSEDSSSPANYNITDVKLDQPTILILGN 180
Query: 499 EGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSV 558
EG G+ + C +RI G GN ++SLNVSV
Sbjct: 181 EGFGVHKSIINQCDKTIRISG-----------------GNK----------KIDSLNVSV 213
Query: 559 AAGVLLHHLV 568
+ G+L+H L+
Sbjct: 214 STGILIHSLL 223
>gi|410980570|ref|XP_003996650.1| PREDICTED: LOW QUALITY PROTEIN: rRNA methyltransferase 1,
mitochondrial [Felis catus]
Length = 359
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 83/243 (34%), Positives = 128/243 (52%), Gaps = 36/243 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L+ AE I + + L+ + + HQG+ ++ SPL E+ +D L
Sbjct: 94 ELLRAAEARDIPVLRPRRQKLDALCRYQVHQGVCMEVSPLRPRPWTEVGEARPGDDPRQL 153
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLG ++RSA+F G V+ +NS PL+ VVSKAS+G++E+M+L ++
Sbjct: 154 WLVLEGLQDPRNLGGVLRSAHFLGVDKVITSGRNSCPLTPVVSKASAGAMEVMDLFSTDD 213
Query: 457 MMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPL 506
+ FL + A GW V G G + + +EIP +PT+LVLG+EG+GL
Sbjct: 214 LAGFLQARAREGWLVAGTVGCLGPEISSFSEIPVTSCLEFLWDRPTVLVLGNEGSGLSKG 273
Query: 507 VERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V+ SC L+ I PG Q S ++SLNVSVAAG+LLH
Sbjct: 274 VQASCQLLLTILPGR-----------------------QLPS--GLDSLNVSVAAGILLH 308
Query: 566 HLV 568
+
Sbjct: 309 SIC 311
>gi|254584204|ref|XP_002497670.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
gi|6523570|emb|CAB62290.1| hypothetical protein [Zygosaccharomyces rouxii]
gi|238940563|emb|CAR28737.1| ZYRO0F10868p [Zygosaccharomyces rouxii]
Length = 415
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 115/401 (28%), Positives = 174/401 (43%), Gaps = 106/401 (26%)
Query: 230 EEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKP---------------EYQRWNRQENSG 274
E GE+ EA W KR+ + + + ++P E QR QE
Sbjct: 54 ERAGEDKEA-----WFKRKYAHVHAKQKQQQEPRDPFGKRKAHELRLKENQRRMEQE--- 105
Query: 275 RTTW------KEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRK 328
RTT K A P + E +YG VLAAL RE+Y+ + G L
Sbjct: 106 RTTHVHKFEKKNATQGLRPNPLMEYVYGTNSVLAALQGNKREYYSRLLHYG-QLDP---- 160
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
++ K+A++ + + ET KH LN++ H ++L+ PL+ +I L ++
Sbjct: 161 --------RLQKLAKSRNVELVETDKHRLNLMTNYAVHNNIILETKPLQPPEISHLQMVN 212
Query: 389 -----------ADEDQA---------------SLWVALDEVTDPQNLGAIIRSAYFFGAS 422
A ED+ L + LDEV DP N+GAI+RSAYF GA
Sbjct: 213 PESGTIQYSELAFEDEKITQEMPYGVKNGKNFPLGIYLDEVVDPHNIGAIMRSAYFLGAD 272
Query: 423 GVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE-NGWRVLGGSV----- 476
+V+ KN APLS VSK SSG++EL+ + Y + + F S + GW + +
Sbjct: 273 FIVMSRKNCAPLSAAVSKTSSGAIELLPIFYVDKPLSFFSESQQGGGWTFVTAGLTDFTQ 332
Query: 477 ------SSKAVPLNEIP---PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
S K + LN++ P +LV+G+EG+G+R ++ V IP
Sbjct: 333 KDKKFNSGKILELNDLEGLCEQVPVVLVVGNEGSGVRTNLKMRSDFFVEIP--------- 383
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
D G V+SLNVSVA +L+++L+
Sbjct: 384 -----FGRDDEKG---------PVDSLNVSVATALLINYLL 410
>gi|291405649|ref|XP_002719297.1| PREDICTED: mitochondrial rRNA methyltransferase 1 homolog
[Oryctolagus cuniculus]
Length = 346
Score = 129 bits (325), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 155/309 (50%), Gaps = 48/309 (15%)
Query: 271 ENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK 330
E GR + AP+ P++ E L+G+ P L AL A R L +Q G + R +
Sbjct: 36 EELGRLRLDDLAPA--PRL--ELLFGLSPCLLALRAARRRVARLLLQAGRAGLQGERAE- 90
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
+L+ AE GI + + L+ + ++ HQG+ ++ SPL+ E
Sbjct: 91 -------LLRAAEARGIPVLRPRRQKLDALCRHQVHQGVCMEVSPLQPQPWTETMGAGPG 143
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
D LW+ LD + DP+NLGA++RSA+F G V+ ++S PL+ VVSKAS+G++E+M+
Sbjct: 144 ADPQQLWLVLDGLQDPRNLGAVLRSAHFLGVDKVITSRRSSCPLTPVVSKASAGAMEVMD 203
Query: 451 LRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEG 500
+ +++ FL + A GW V G G + +E+P +PT+LVLG+EG
Sbjct: 204 VFSTDDLAGFLQARARQGWLVAGAVGPPGPETAQSSEVPVTSCLDFLWDRPTLLVLGNEG 263
Query: 501 TGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
+GL V+ SC L+ I PG Q +ESLNVSVA
Sbjct: 264 SGLSQEVQASCRCLLTILPGR-------------------------QLPPGLESLNVSVA 298
Query: 560 AGVLLHHLV 568
AG+LLH +
Sbjct: 299 AGILLHAIC 307
>gi|344285321|ref|XP_003414410.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Loxodonta
africana]
Length = 355
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/246 (32%), Positives = 130/246 (52%), Gaps = 42/246 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L+ AE GI + + L+ + ++ HQG+ ++ SPL + E +D L
Sbjct: 89 ELLRAAEERGIPVVRPRRQKLDALSRHQVHQGVCMEVSPLRLRPWTESGEARPGDDAQQL 148
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G +++ +NS PL+ VVSKAS+G++E+M++ ++
Sbjct: 149 WLVLEGLQDPRNLGAVLRSAHFLGVDKIIISRRNSCPLTPVVSKASAGAVEVMDVFSTDD 208
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG--------------QPTILVLGSEGTG 502
+ F+ + A GW V G + P EIP +PT+LVLG+EG+G
Sbjct: 209 LTGFMQAKARQGWLVAG----TVGCPGPEIPHSSQIPVISCLEFLWDRPTLLVLGNEGSG 264
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L V+ SC L+ I +P + Q +ESLNVSVAAG+
Sbjct: 265 LSQEVQASCQLLLTI---LP---------------------RRQLPPGLESLNVSVAAGI 300
Query: 563 LLHHLV 568
LLH +
Sbjct: 301 LLHSIC 306
>gi|367009196|ref|XP_003679099.1| hypothetical protein TDEL_0A05560 [Torulaspora delbrueckii]
gi|359746756|emb|CCE89888.1| hypothetical protein TDEL_0A05560 [Torulaspora delbrueckii]
Length = 404
Score = 128 bits (322), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 99/344 (28%), Positives = 152/344 (44%), Gaps = 79/344 (22%)
Query: 269 RQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRK 328
RQE+ + + A + E +YG VLAAL RE++ + G ++
Sbjct: 96 RQEHERKFEKRSATQGLRVNPLMEYVYGTNGVLAALQGGKREYFTRLLHHGPLPTT---- 151
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL---D 385
+ ++AE I + ET KH LN++ H +VL+ PL+ +I L D
Sbjct: 152 ---------IAQLAEKNDIKVMETDKHRLNLLTNYAVHNSVVLETKPLQPTEISHLQLCD 202
Query: 386 P-----------------------ISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGAS 422
P + ++ + L + LDEV DP N+GAIIRSAYF GA
Sbjct: 203 PEAGKFQYSEMIFDNEYSTHDFRYLVNEKKKFPLGIYLDEVVDPHNIGAIIRSAYFLGAD 262
Query: 423 GVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA-ENGWRVLGGSVSSKAV 481
+V+ +N APLS VSK SSG++ELM + + + + F S E GW + +++
Sbjct: 263 FIVMSRRNCAPLSPAVSKTSSGAVELMPIYHVDKPLNFFSKSQEEGGWTFVTSCLTNSDS 322
Query: 482 PLNEIPPGQ--------------PTILVLGSEGTGLRPLVERSCTHLVRIPG--NIPVDV 525
+ + G+ P +LV+G+EG+G+R ++ V IP IP
Sbjct: 323 KMKKYSTGKILEMGALNGLCQELPVMLVVGNEGSGVRTNIKMRSDFFVEIPFGRQIPNKE 382
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
T V+SLNVSVA +LL +L+G
Sbjct: 383 T-----------------------PVDSLNVSVATALLLSNLLG 403
>gi|358365374|dbj|GAA81996.1| RNA methyltransferase, TrmH family [Aspergillus kawachii IFO 4308]
Length = 501
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 99/334 (29%), Positives = 151/334 (45%), Gaps = 66/334 (19%)
Query: 283 PSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMA 342
P T P + +YG+ +AAL R Y LY+ + S ++ +K + L ++
Sbjct: 181 PYTTP--ASQFVYGISACMAALRGSRRRLYKLYLYQ-----SEGQELTPEKIALRKLALS 233
Query: 343 ENMGISIKETS-KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI-SADEDQASL---- 396
+N+ + + S + L+ + RPHQG +L+ SPL + ++ P+ S D SL
Sbjct: 234 KNVAVKMAFASWRRLLDQMSDGRPHQGCILEVSPLPRLPVQYFRPVPSPGADHFSLELGA 293
Query: 397 ---------------------------WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAK 429
V LD + DP NLGAIIRSAY+ GA +V +
Sbjct: 294 QSREEAQVNTMNNTVDINNTFGNRYPVVVLLDGIVDPGNLGAIIRSAYYMGADAIVFAGR 353
Query: 430 NSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG 489
NSA +S VV KAS+G+ E M + N + F+ S ENGWR K + P
Sbjct: 354 NSAEISPVVIKASAGAAEHMTFLHVRNEVDFIRQSKENGWRFYAADAPGKGSSSVYMDPA 413
Query: 490 Q----------PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNH 539
+ P+++++GSEG GL P + +V IPG + G V++D
Sbjct: 414 EFGNEGTVAQAPSVIMMGSEGAGLSPHILSQANAVVGIPG-AKISPELG----VESDPAR 468
Query: 540 GSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V+SLNVSVAA +L++ + VS
Sbjct: 469 -----------VDSLNVSVAAALLMNMFLRVPVS 491
>gi|118580099|ref|YP_901349.1| RNA methyltransferase [Pelobacter propionicus DSM 2379]
gi|118502809|gb|ABK99291.1| RNA methyltransferase, TrmH family, group 3 [Pelobacter propionicus
DSM 2379]
Length = 251
Score = 128 bits (322), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++GV PV AL K RE + LYVQ S ++++R +K+L++A G+ +
Sbjct: 4 ELVFGVNPVREALRGK-REIFGLYVQ---STATDHR-------LDKILELARERGVRVIR 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL + G+ HQG+ L +P + +L ED A + LD + DP NLGA
Sbjct: 53 REREDLTRMCGSSHHQGMALKVAPFSYADLDDLIEAGDREDAAGFLLVLDGIQDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IR+A GASGVV+ + ++ KAS+G++E + + N+ Q L +G+ V
Sbjct: 113 LIRTAACAGASGVVIPRDRACAITPAAEKASAGAVETITVAQVTNIAQSLEKLKRSGYWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G S + A L E+ LV+G EG G+RPLV + C LV IP
Sbjct: 173 YGLSGEADA-SLYEVAFSGKIALVIGGEGEGIRPLVRKQCDALVSIP------------- 218
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ V SLN SVA G+ L+ +
Sbjct: 219 ---------------LYGGVGSLNASVAGGIALYEV 239
>gi|386741061|ref|YP_006214241.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 31]
gi|384477755|gb|AFH91551.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 31]
Length = 313
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V +MA + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIAEGT--------KNDARLSEAV-QMAHSRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+KH+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VAKHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|68535387|ref|YP_250092.1| rRNA methylase [Corynebacterium jeikeium K411]
gi|68262986|emb|CAI36474.1| putative rRNA methylase [Corynebacterium jeikeium K411]
Length = 318
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK ALYV EG K D++ E V A+ GIS+ E
Sbjct: 74 ELVVGRNPVIECLHAKV-PATALYVAEGT--------KNDERLAEAVHTCADR-GISVLE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + GN HQG+ L P + ++++L +A Q L VALD +TDP+NLGA
Sbjct: 124 VSRAELDRMTGNGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + NM++ L + G++V
Sbjct: 184 VIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQFQQAGYQV 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ PT++V+GSEG GL LV +C ++ IP
Sbjct: 244 VGLDAGGDHT-LDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIP------------- 289
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 290 -----------------MAKWVESLNASVAAGVVL 307
>gi|260578386|ref|ZP_05846300.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
ATCC 43734]
gi|258603408|gb|EEW16671.1| TrmH family group 3 RNA methyltransferase [Corynebacterium jeikeium
ATCC 43734]
Length = 318
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/275 (33%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK ALYV EG K D++ E V A+ GIS+ E
Sbjct: 74 ELVVGRNPVIECLHAKV-PATALYVAEGT--------KNDERLAEAVHTCADR-GISVLE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + GN HQG+ L P + ++++L +A Q L VALD +TDP+NLGA
Sbjct: 124 VSRAELDRMTGNGMHQGIGLQIPPYQYTQVEDLIQQAASAPQPGLVVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + NM++ L + G++V
Sbjct: 184 VIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNMVRSLKQLQQAGYQV 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ PT++V+GSEG GL LV +C ++ IP
Sbjct: 244 VGLDAGGDHT-LDTYDGTTPTVIVVGSEGKGLSRLVSETCDTIMSIP------------- 289
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 290 -----------------MAKWVESLNASVAAGVVL 307
>gi|324521326|gb|ADY47830.1| RRNA methyltransferase 1, partial [Ascaris suum]
Length = 334
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 143/285 (50%), Gaps = 42/285 (14%)
Query: 249 NSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKT 308
++FR+ + A E Y + NR VPK+ GE +YG PVL AL A
Sbjct: 47 SAFRKALTAGVEINAYCKRNRS-------------VMVPKVRGEIVYGTYPVLEALKANR 93
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
R Y L+ + S R K+D +K+L++A + G+ IK + L+++ + H G
Sbjct: 94 RSIYKLFAKA----SVLGRAKQDDIIAKKILRLANDSGVDIKALNADQLDVLTEYQLHNG 149
Query: 369 LVLDASPLEMVKIKELDPISADED--QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVL 426
L +DASPL + DED A +++ LD+V DP N+GAIIRS ++F GV+L
Sbjct: 150 LCIDASPLSY-------EVLCDEDIVNAKIFLYLDKVLDPGNIGAIIRSCFYFRIDGVIL 202
Query: 427 CAKNSAP--LSGVVSKASSGSLELMEL-----------RYCNNMMQFLVSSAENGWRVLG 473
A++ P L+ +SKAS+G+LE + R N +F+ +S EN +
Sbjct: 203 -ARDQGPKTLTAAMSKASAGALERFPVYTVEDFPSFRKRLRNVGFKFIATSDENSA-ITK 260
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G S +P + P +++LG EG G+ + C ++V+IP
Sbjct: 261 GYQSPIRLP-DFRPINDKVVIILGDEGRGIATDILSQCDYIVQIP 304
>gi|397654725|ref|YP_006495408.1| hypothetical protein CULC0102_1975 [Corynebacterium ulcerans 0102]
gi|393403681|dbj|BAM28173.1| hypothetical protein CULC0102_1975 [Corynebacterium ulcerans 0102]
Length = 313
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V +MA + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIAEGT--------KNDARLSEAV-QMAHSRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|387139333|ref|YP_005695312.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|389851101|ref|YP_006353336.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 258]
gi|349735811|gb|AEQ07289.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis CIP 52.97]
gi|388248407|gb|AFK17398.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 258]
Length = 313
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V +MA + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIAEGT--------KNDARLSEAV-QMAHSRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|379716051|ref|YP_005304388.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 316]
gi|387141309|ref|YP_005697287.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 1/06-A]
gi|355393100|gb|AER69765.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 1/06-A]
gi|377654757|gb|AFB73106.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 316]
Length = 313
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V +MA + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIAEGT--------KNDARLSEAV-QMAHSRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKTTNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|271962521|ref|YP_003336717.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
gi|270505696|gb|ACZ83974.1| rRNA methylase-like protein [Streptosporangium roseum DSM 43021]
Length = 322
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 103/316 (32%), Positives = 150/316 (47%), Gaps = 42/316 (13%)
Query: 256 KARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALY 315
KARTE+ E + + +S RT + P+ +G G PVL AL A LY
Sbjct: 47 KARTERIEREDRTGRPSSPRTPVRGRRSEDAPEYIG----GRNPVLEALRAGV-PASTLY 101
Query: 316 VQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASP 375
+ L + +++R K+ +++A + GI++ E K L+ + HQG+ L P
Sbjct: 102 IA--LRIDNDDRVKES-------VRIAADHGIAMLEVGKEKLDRLTEGAIHQGMALQIPP 152
Query: 376 LEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLS 435
E ++L I+ D + L VALD VTDP+NLGAI RSA FGA G+V+ ++ SA ++
Sbjct: 153 YEYAHPEDLIGIAQDAAEVPLIVALDSVTDPRNLGAIARSATAFGAHGMVIPSRRSAGVT 212
Query: 436 GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILV 495
G K S+G+L + + N+ L E G V+G S + P ++V
Sbjct: 213 GGAWKTSAGTLAHLTVARAANLTATLREYREAGLFVIGLDGESTVDIGDANLLDGPLVVV 272
Query: 496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLN 555
+GSEG GL LV SC +VRIP N A ESLN
Sbjct: 273 VGSEGKGLSRLVRESCDLVVRIPMN----------------------------AAAESLN 304
Query: 556 VSVAAGVLLHHLVGHQ 571
VAAGV L+ + H+
Sbjct: 305 AGVAAGVALYEVARHR 320
>gi|281343848|gb|EFB19432.1| hypothetical protein PANDA_012560 [Ailuropoda melanoleuca]
Length = 366
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/306 (32%), Positives = 152/306 (49%), Gaps = 54/306 (17%)
Query: 284 STVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKM 341
++ P+ G E L+G+ P L AL A R L +Q G S R + +L+
Sbjct: 47 ASTPRSAGRLELLFGLSPCLLALRAARRRVARLLLQAGRSGLQGERAE--------LLRA 98
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
AE I + + L+ + ++ HQG+ ++ SPL+ E+ +D LW+ L+
Sbjct: 99 AEARDIPVLRPRRQKLDALCRSQVHQGVCMEVSPLKPRPWTEVGEARPGDDPQQLWLVLE 158
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKN--------SAPLSGVVSKASSGSLELMELRY 453
+ DP+NLGA++RSA+F G ++ +N + PL+ VVSKAS+G++E+M++
Sbjct: 159 RIQDPRNLGALLRSAHFLGVDKIITSGRNRHGRPLVPTCPLTPVVSKASAGAMEVMDVFS 218
Query: 454 CNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGL 503
+++ FL + A GW V G G + P +EIP +PT+LVLG+EG+GL
Sbjct: 219 TDDLAGFLQAKAREGWLVAGTVGCPGPEISPSSEIPITSCLEFLWDRPTLLVLGNEGSGL 278
Query: 504 RPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
V+ SC L+ I PG Q +ESLNVSVAAG+
Sbjct: 279 SQAVQASCQLLLTILPGR-------------------------QLPPGLESLNVSVAAGI 313
Query: 563 LLHHLV 568
LLH +
Sbjct: 314 LLHSIC 319
>gi|337291588|ref|YP_004630609.1| hypothetical protein CULC22_01985 [Corynebacterium ulcerans
BR-AD22]
gi|384516359|ref|YP_005711451.1| hypothetical protein CULC809_01830 [Corynebacterium ulcerans 809]
gi|334697560|gb|AEG82357.1| hypothetical protein CULC809_01830 [Corynebacterium ulcerans 809]
gi|334699894|gb|AEG84690.1| hypothetical protein CULC22_01985 [Corynebacterium ulcerans
BR-AD22]
Length = 313
Score = 126 bits (317), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V +MA + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIAEGT--------KNDARLSEAV-QMAHSRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG+++
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQI 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|444316244|ref|XP_004178779.1| hypothetical protein TBLA_0B04220 [Tetrapisispora blattae CBS 6284]
gi|387511819|emb|CCH59260.1| hypothetical protein TBLA_0B04220 [Tetrapisispora blattae CBS 6284]
Length = 410
Score = 126 bits (316), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 160/328 (48%), Gaps = 66/328 (20%)
Query: 279 KEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV 338
+ PS P + + +YG V+AAL++K R ++ + G +LS +
Sbjct: 109 RNVMPSLKPNPLSDYVYGTNSVIAALNSKKRAYHMKLLYYG-TLSP------------VI 155
Query: 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-------------- 384
++A + I +++ +KH LN++ N H +VL+ P+E +++ L
Sbjct: 156 ARLATQIYIPMEKATKHQLNLLTNNGIHNNVVLETKPIETIEVSHLKSCDDESGVMRFDE 215
Query: 385 ---------DPISADEDQAS--LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+ I D + L + LD++ DP N+GAIIRSAYF G +++ +NS+P
Sbjct: 216 TIAINLFEENQIRYDNKTKTYPLGIFLDQIMDPHNMGAIIRSAYFLGVDFILISRRNSSP 275
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAE-NGWRVLGGS--------VSSKAVPLN 484
LS VVSK+SSG+LEL+ + + + F+ + + N W + S KA+ L
Sbjct: 276 LSPVVSKSSSGALELIPILTVDRPLDFVNRTKQANDWTFITTDSNPNARKEFSPKALKLA 335
Query: 485 EIPPGQ----PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG 540
++ GQ PTIL++G+EG G+R ++ + +V IP +++ G
Sbjct: 336 DL-KGQCNEAPTILIVGNEGKGVRTNMKFNSDFIVE----IPFKERPRSKNEIRGGGG-- 388
Query: 541 SAEQFQSFMAVESLNVSVAAGVLLHHLV 568
M V+SLNVSVA +L+ +++
Sbjct: 389 --------MVVDSLNVSVATALLIDNIL 408
>gi|433602236|ref|YP_007034605.1| RNA methyltransferase, TrmH family [Saccharothrix espanaensis DSM
44229]
gi|407880089|emb|CCH27732.1| RNA methyltransferase, TrmH family [Saccharothrix espanaensis DSM
44229]
Length = 320
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 104/319 (32%), Positives = 142/319 (44%), Gaps = 58/319 (18%)
Query: 259 TEKPEYQRWNR--------QENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTRE 310
TE+P + + R Q S R E P TV G PV+ L A
Sbjct: 42 TERPNHPAFKRAQAGAKADQSRSRRQKNAENTPETV--------AGRNPVVECLRADI-P 92
Query: 311 FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLV 370
ALYV G+ D + E V K+A + GIS+ E + +L+ + G HQGL
Sbjct: 93 ATALYVAMGID--------TDDRVAEAV-KLAADRGISVLEVQRGELDRITGGAMHQGLG 143
Query: 371 LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
L P E + ++L I+ + L VALD VTDP+NLGA++RSA FGA GVVL +
Sbjct: 144 LQVPPYEYAEPRDLLKIAKESGHPPLLVALDGVTDPRNLGAVVRSAAAFGAQGVVLPQRR 203
Query: 431 SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ 490
SA ++ V + S+G+ M + N+ + L AE G ++G
Sbjct: 204 SASITAVAWRTSAGTAARMPIAIATNLTRQLREWAEAGLMIVGLDADGDVDVDGLDLATG 263
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
P ++V+GSEG GL LV +C V IP MA
Sbjct: 264 PLVVVVGSEGRGLSRLVRETCDQTVSIP------------------------------MA 293
Query: 551 --VESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 294 PGVESLNASVAAGVVLAEV 312
>gi|392401249|ref|YP_006437849.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis Cp162]
gi|390532327|gb|AFM08056.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis Cp162]
Length = 270
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 89/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V +MA + GI + E
Sbjct: 27 ELVVGRNPVVECLHAKV-PATSLYIAEG--------TKNDARLSEAV-QMAHSRGIPLIE 76
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 77 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 136
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 137 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 196
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 197 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 242
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 243 -----------------MARWVESLNASVAAGVVL 260
>gi|253699965|ref|YP_003021154.1| TrmH family RNA methyltransferase [Geobacter sp. M21]
gi|251774815|gb|ACT17396.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M21]
Length = 249
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 140/284 (49%), Gaps = 45/284 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ PV+ AL +RE + L+V SS+ R EK+LK+A + I +++
Sbjct: 5 EIIYGLNPVMEALRG-SREIHELFVA---GTSSDKR-------LEKLLKLAADRKIPVRQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD--EDQASLWVALDEVTDPQNL 409
K DLN + G HQG+ L P +LD + A+ +Q L + LD V DP NL
Sbjct: 54 REKGDLNRLCGTEHHQGVALKVEPFPYA---DLDDVLAELKGNQEGLVLVLDSVQDPHNL 110
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GA+IRSA GA VV+ +A ++ V K+S+G+ E + + N+ Q L S + G+
Sbjct: 111 GALIRSAACAGAHAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGF 170
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+ G S+++ + G P LV+G EG G+RPLV + C +V IP
Sbjct: 171 WIYGADGSARSTLYQQDFSG-PVALVIGGEGEGIRPLVRKGCDAVVSIP----------- 218
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
Q V SLN SVA G++L +V ++S
Sbjct: 219 ---------------LQG--GVNSLNASVAGGIMLFEVVRQRMS 245
>gi|385808235|ref|YP_005844632.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 267]
gi|383805628|gb|AFH52707.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 267]
Length = 313
Score = 125 bits (314), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 137/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L +K + +LY+ EG K D + E V +MA GI + E
Sbjct: 70 ELVVGRNPVVECLHSKVPKT-SLYIAEGT--------KNDARLSEAV-QMAHRRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|384507438|ref|YP_005684107.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis C231]
gi|302206864|gb|ADL11206.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis C231]
Length = 313
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 136/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L +K +LY+ EG K D + E V +MA GI + E
Sbjct: 70 ELVVGRNPVVECLHSKV-PATSLYIAEGT--------KNDARLSEAV-QMAHRRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|300859174|ref|YP_003784157.1| hypothetical protein cpfrc_01757 [Corynebacterium
pseudotuberculosis FRC41]
gi|375289364|ref|YP_005123905.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 3/99-5]
gi|383314930|ref|YP_005375785.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis P54B96]
gi|384505346|ref|YP_005682016.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 1002]
gi|384509535|ref|YP_005686203.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis I19]
gi|384511620|ref|YP_005691198.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis PAT10]
gi|387137267|ref|YP_005693247.1| SpoU rRNA methylase family protein [Corynebacterium
pseudotuberculosis 42/02-A]
gi|300686628|gb|ADK29550.1| hypothetical protein cpfrc_01757 [Corynebacterium
pseudotuberculosis FRC41]
gi|302331428|gb|ADL21622.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 1002]
gi|308277116|gb|ADO27015.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis I19]
gi|341825559|gb|AEK93080.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis PAT10]
gi|348607712|gb|AEP70985.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 42/02-A]
gi|371576653|gb|AEX40256.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis 3/99-5]
gi|380870431|gb|AFF22905.1| SpoU rRNA Methylase family protein [Corynebacterium
pseudotuberculosis P54B96]
Length = 313
Score = 125 bits (314), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 136/275 (49%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L +K +LY+ EG K D + E V +MA GI + E
Sbjct: 70 ELVVGRNPVVECLHSKV-PATSLYIAEGT--------KNDARLSEAV-QMAHRRGIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++H+L+ + GN HQG+ L P + V++ +L + D + + V LD +TDP+NLGA
Sbjct: 120 VARHELDRMTGNGMHQGIGLQIPPYKYVEVYDLITQAKDSGEPGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRALKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 VGLDAGGDAT-LDTYDGKGPVVIVVGSEGKGISRLVRETCDSIMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MARWVESLNASVAAGVVL 303
>gi|74224181|dbj|BAE33706.1| unnamed protein product [Mus musculus]
Length = 321
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 129/246 (52%), Gaps = 35/246 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE GI + + L+ + G + HQG+ ++ SPL E S+ +D L
Sbjct: 85 ELLRVAEARGIPVLRPRRQKLDALCGYQVHQGVCMEVSPLRPRPCDEAADTSSGDDPQQL 144
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +
Sbjct: 145 WLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPD 204
Query: 457 MMQFLVSSAENG-------WRVLGGSVS-SKAVPLN---EIPPGQPTILVLGSEGTGLRP 505
+ FL + A G W G +S S VP+ E +PT+LVLGSEG+GL
Sbjct: 205 LPGFLQAKAPAGGGSWWAQWGCPGPEISQSSKVPITSCLEFVWDRPTLLVLGSEGSGLSQ 264
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SC L+ I +P + +ESLNVSVA G+LLH
Sbjct: 265 EVFASCQLLLTI---LP---------------------RRHLPPGLESLNVSVATGILLH 300
Query: 566 HLVGHQ 571
+ +
Sbjct: 301 SICSQK 306
>gi|366989731|ref|XP_003674633.1| hypothetical protein NCAS_0B01750 [Naumovozyma castellii CBS 4309]
gi|342300497|emb|CCC68259.1| hypothetical protein NCAS_0B01750 [Naumovozyma castellii CBS 4309]
Length = 418
Score = 125 bits (313), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 95/324 (29%), Positives = 147/324 (45%), Gaps = 83/324 (25%)
Query: 292 EGLYGVGPVLAALSAKTREFY-ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
E +YG V+AAL RE++ L+ L+ S + K+ ++ ++++
Sbjct: 131 EYIYGTNCVMAALKNDKREYFNKLFFYGSLNPS--------------IGKLVKDRDVTLE 176
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI----------------------- 387
+T KH LN++ H +VL+ PL+ +++ L P+
Sbjct: 177 QTDKHRLNLLTNYGVHNNIVLETKPLQPMELSHLGPLDQESGIMSLQEIGFDNTSLIPHE 236
Query: 388 ------SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKA 441
S + L + LDEVTDP N+GAIIRSAYF G +V+ KN APLS VV K
Sbjct: 237 IPYNNKSCPNKKYPLGLFLDEVTDPHNVGAIIRSAYFLGVDFIVMTRKNCAPLSPVVDKT 296
Query: 442 SSGSLELMELRYCNNMMQFLV-SSAENGWRVL------GGSVSSKAVPLNEIPPGQ---- 490
SSG++E M + Y + +QF S +E GW + GG+V + +I
Sbjct: 297 SSGAMEYMPIYYVDKPLQFFTKSQSEGGWAFITSYLSAGGNVKGQKYMEGKILDKDDLKG 356
Query: 491 -----PTILVLGSEGTGLRPLVERSCTHLVRIP-GNIPVDVTAGEIDDVDADGNHGSAEQ 544
P +LV+G+EG G+R + V IP G P +D V
Sbjct: 357 KSNELPIMLVVGNEGEGVRTNLRMRSDFFVEIPFGRDP-----QTMDHV----------- 400
Query: 545 FQSFMAVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+++++
Sbjct: 401 ------VDSLNVSVATALLINNVI 418
>gi|45187604|ref|NP_983827.1| ADL269Wp [Ashbya gossypii ATCC 10895]
gi|44982342|gb|AAS51651.1| ADL269Wp [Ashbya gossypii ATCC 10895]
gi|374107039|gb|AEY95947.1| FADL269Wp [Ashbya gossypii FDAG1]
Length = 397
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 82/279 (29%), Positives = 132/279 (47%), Gaps = 52/279 (18%)
Query: 279 KEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV 338
+ A P + + +YG +L AL + RE++ + G +L ++
Sbjct: 104 RHAFDPLTPDPLLDRIYGRNSILLALQSNRREYFVRLLHSG-NLDP------------QI 150
Query: 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL-- 396
K+A +GI ++ +H LNM+ N H GLVL+A PL +I L + + L
Sbjct: 151 AKLAGQLGIKVQSAQRHQLNMMTNNAVHNGLVLEAKPLYPQEINALGAVDHEAGTFELID 210
Query: 397 -W----------------------VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
W + LDEV DP N+GAI+RSAYF GA V + +NSAP
Sbjct: 211 QWSNNGTAQKVPFLQSAKKRYPVGLYLDEVVDPHNVGAILRSAYFLGADFVAVSHRNSAP 270
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFL-VSSAENGWRV----------LGGSVSSKAVP 482
LS VSK SSG+LE++ + + +QF S E+ W + V ++ +P
Sbjct: 271 LSAAVSKTSSGALEVLPIYSVDKPLQFFERSRDEHDWVFVASHLTQGPGISSHVKNRVLP 330
Query: 483 LN---EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ ++ P +LV+G+EGTG+R +++ V++P
Sbjct: 331 IEDMADLAQSSPVMLVVGNEGTGIRSNLQQRSDFFVQVP 369
>gi|145510039|ref|XP_001440955.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408189|emb|CAK73558.1| unnamed protein product [Paramecium tetraurelia]
Length = 261
Score = 124 bits (312), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 137/283 (48%), Gaps = 45/283 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG--YEKVLKMAENMGISI 349
+ LYG+ PV++AL A R F LYV N ++ D +L A+++ + +
Sbjct: 17 DYLYGINPVMSALYANKRSFTQLYV--------NQTQQNDYINPRVSNILNRAQSLKLDV 68
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
+ K+ L N HQ ++L S L +L DE S +V LD V DPQN
Sbjct: 69 QMIPKNKLERYCSNDHHQNVILKCSKLNYCN--QL----PDE---SNFVLLDSVQDPQNF 119
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAI+R +F G + V++ K PLS VSK S+G+LELM + +N+ F V ++ +
Sbjct: 120 GAILRVCFFLGINTVIVEKKGQCPLSPTVSKTSAGALELMNIFETDNLANF-VKQRKHEF 178
Query: 470 RVLGGSVSSKAVPLNEIPPGQ---PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
+V+G S ++P++E Q I++ GSE +G+R + + C +V I
Sbjct: 179 QVIGSGFESNSIPIDEFQKDQNKPKKIIIFGSESSGIRTELFKQCDTIVNI--------- 229
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
H E V+SLNVSV+AG++L ++
Sbjct: 230 --------MTSRHTFPETL-----VDSLNVSVSAGIILQSVLN 259
>gi|288957405|ref|YP_003447746.1| RNA methyltransferase [Azospirillum sp. B510]
gi|288909713|dbj|BAI71202.1| RNA methyltransferase [Azospirillum sp. B510]
Length = 311
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 143/288 (49%), Gaps = 27/288 (9%)
Query: 248 RNSFRRDVKARTEKPEYQ-------RWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
RNS R + KP++Q R ++ +++GR P G LYG+ PV
Sbjct: 18 RNS-ERQAERTGAKPQHQPQHGAASRQDQTDDAGRGRRGATKGGRAPAARGVLLYGLHPV 76
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDL--- 357
AA + R + L V + + E V+ A G+ E S D
Sbjct: 77 AAAWTNPERRIHRLLVTD-----------SGRAALEPVIAEARARGLQRPEASPADRVEL 125
Query: 358 -NMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSA 416
M+ HQG+V+DASPL + I++L A E A + VALD+VTDP N+GAI+RSA
Sbjct: 126 DRMLPPGAVHQGIVIDASPLPELGIEDLCNELASEPSAVI-VALDQVTDPHNVGAILRSA 184
Query: 417 YFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGS 475
FGA VV+ +++ +GV++K++SG+LE + L N+ + L +NG W V G
Sbjct: 185 AAFGARAVVVTERHAPETTGVLAKSASGALEAVPLVRVTNLARALTDLQQNGFWSV--GL 242
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
S L ++ T+LV+G+EG+GLR L C + R+P PV
Sbjct: 243 AESGPSTLAKLDLTGKTVLVMGAEGSGLRRLTMERCDAIARLPTGGPV 290
>gi|381207759|ref|ZP_09914830.1| RNA methyltransferase [SAR324 cluster bacterium JCVI-SC AAA005]
Length = 254
Score = 124 bits (311), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 90/279 (32%), Positives = 135/279 (48%), Gaps = 43/279 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ PV AA+S R+ +AL+V+ SN + + + A+ GI K
Sbjct: 18 EWLYGINPVEAAISRSFRKHFALWVKH-----SNGER------IPGLQQTAKERGIFTKT 66
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ + HQG++L+ SP + L P+ ++ ++ LD++ DPQN GA
Sbjct: 67 ATPEIFETYCPDGIHQGVLLECSPRHLESPTYL-PVP--QNLNPFYLVLDQIKDPQNFGA 123
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA FFG SG + +S ++ VSKAS G E + N+ +FL +NG+ +
Sbjct: 124 ILRSAAFFGCSGCIKTKDHSPGVTPAVSKASVGVAEWFPIFETTNLARFLADQKKNGFWI 183
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + K L ++ +P +LV G+EG GLR LV++ C VRI G
Sbjct: 184 IGLASDGK-TDLRKLERDRPLLLVFGNEGKGLRQLVKQQCDWDVRIDGT----------- 231
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570
EQ VESLNVSVAA + + L H
Sbjct: 232 -----------EQ------VESLNVSVAAALACYQLGAH 253
>gi|452959001|gb|EME64343.1| RNA methyltransferase YjfH [Amycolatopsis decaplanina DSM 44594]
Length = 318
Score = 124 bits (310), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 138/280 (49%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV +++ ++R + +++A + GISI E
Sbjct: 71 ELIAGRNPVVEALRADV-PATALYV--AINIEIDDR-------VNEAVRLAGDKGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P + ++L ++ D Q L+VALD VTDP+NLGA
Sbjct: 121 IPREELDRKTNRAMHQGLGLQVPPFQYADPRDLMAVAKDSGQTPLFVALDGVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L + SA ++ V + S+G+ + + N+ + L + + G V
Sbjct: 181 VIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLKAWKDEGLMV 240
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G GSV + L P ++VLGSEG GL LV +C V IP + A
Sbjct: 241 VGLDADGSVDIDELDLA----ADPLVIVLGSEGRGLSRLVRETCDATVSIP------MAA 290
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G VESLN SVAAGVLL +
Sbjct: 291 G----------------------VESLNASVAAGVLLAEV 308
>gi|354477126|ref|XP_003500773.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Cricetulus
griseus]
Length = 318
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 134/254 (52%), Gaps = 35/254 (13%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLE-MVKIKELDPISADEDQAS 395
++L++AE GI + + L+ + G++ HQG+ ++ SPL + E S +D
Sbjct: 81 ELLRVAEARGIPVLRPRRQKLDALCGHQVHQGVCMEVSPLRPRLCDDEAAEASPGDDPQQ 140
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
LW+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +
Sbjct: 141 LWLVLEGLQDPRNLGAVLRSAHFLGVDRVITSRRNSCPLTPVVSKASAGAVEVMDVFATS 200
Query: 456 NMMQFLVSSAENGWRVLGGSVS-------SKAVPLN---EIPPGQPTILVLGSEGTGLRP 505
++ FL + A+ GW V+G S VP+ E +PT+LVLG+EG+GL
Sbjct: 201 DLAGFLKAKAQQGWLVVGTVGCPGPEISHSTKVPITSCLEFIWDRPTLLVLGNEGSGLSQ 260
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SC L+ I +P + +ESLNVSVA G+LLH
Sbjct: 261 EVLASCQLLLTI---LP---------------------RRHLPPGLESLNVSVATGILLH 296
Query: 566 HLVGHQVSNNSHIE 579
+ + S E
Sbjct: 297 SICSQKKSFPVQTE 310
>gi|451339393|ref|ZP_21909910.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Amycolatopsis
azurea DSM 43854]
gi|449417888|gb|EMD23512.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Amycolatopsis
azurea DSM 43854]
Length = 318
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 139/280 (49%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV +++ ++R + +++A + GISI E
Sbjct: 71 ELIAGRNPVVEALRADV-PATALYV--AINIEIDDR-------VNEAVRLAGDKGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P ++L ++ D Q L+VALD VTDP+NLGA
Sbjct: 121 IPREELDRKTNRAMHQGLGLQVPPFVYADPRDLMSVAKDSGQTPLFVALDGVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L + SA ++ V + S+G+ + + N+ + L + ++G V
Sbjct: 181 VIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLKAWKDDGLMV 240
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G GSV + L P ++VLGSEG GL LV +C V IP ++A
Sbjct: 241 VGLDADGSVDIDELDLA----ADPLVIVLGSEGRGLSRLVRETCDATVSIP------MSA 290
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G VESLN SVAAGVLL +
Sbjct: 291 G----------------------VESLNASVAAGVLLAEV 308
>gi|355704263|gb|AES02171.1| mitochondrial rRNA methyltransferase 1-like protein [Mustela
putorius furo]
Length = 355
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 132/247 (53%), Gaps = 41/247 (16%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE I + + L+ + + HQG+ ++ SPL+ E++ +D L
Sbjct: 94 ELLRVAEARDIPVLRLRRQKLDALCRFQVHQGVCMEVSPLKPRPWTEVEEARPGDDPQQL 153
Query: 397 WV---ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
W+ L+ + DP+NLG+++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++
Sbjct: 154 WLPPLVLERLQDPRNLGSVLRSAHFLGVDKVITTGRNSCPLTPVVSKASAGAMEVMDVFS 213
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAV---PLNEIPP--------GQPTILVLGSEGTG 502
+++ FL + + GW V G+VS P ++IP +PT+LVLG+EG+G
Sbjct: 214 TDDLAGFLQAKSRQGWLV-AGTVSCPGPEISPSSDIPITSCLEFLWDRPTLLVLGNEGSG 272
Query: 503 LRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
L V+ SC L+ I PG Q +ESLNVSVAAG
Sbjct: 273 LSLAVQASCQLLLTILPGR-------------------------QLPPGLESLNVSVAAG 307
Query: 562 VLLHHLV 568
+LLH +
Sbjct: 308 ILLHSIC 314
>gi|404422857|ref|ZP_11004530.1| rRNA methylase [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
gi|403655730|gb|EJZ10572.1| rRNA methylase [Mycobacterium fortuitum subsp. fortuitum DSM 46621]
Length = 314
Score = 123 bits (309), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 133/276 (48%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK ALYV G + D++ E V ++A + GISI E
Sbjct: 71 ELVLGRNPVVECLRAKV-PATALYVALG--------TEADERLTESV-QIAADRGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQGL L P + +L D + L VALD ++DP+NLGA
Sbjct: 121 VQRHDLDRMSNNALHQGLALQVPPYDYAHPDDLLKAVRDSGEPGLLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVV+ + SA ++ V + S+G+ + N+ + L S A+ G++V
Sbjct: 181 IVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRTLKSYADAGFQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDAGGD-TSLDELEGTGPMVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 291 -------------------TESLNASVAAGVVLAEI 307
>gi|255713698|ref|XP_002553131.1| KLTH0D09680p [Lachancea thermotolerans]
gi|238934511|emb|CAR22693.1| KLTH0D09680p [Lachancea thermotolerans CBS 6340]
Length = 393
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/317 (29%), Positives = 151/317 (47%), Gaps = 70/317 (22%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P + E ++G V++ L A R++Y+ + S++ +++ +A+ G
Sbjct: 111 PNPLMEYVHGTNSVISVLQADKRDYYSRILYHA-SVT------------DEIRSLAKKRG 157
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL---DP----ISADE---DQAS- 395
++ T KH LN++ H +VL+ PL++ +I ++ DP + DE D+AS
Sbjct: 158 AQLEMTDKHRLNILTNYAVHNNVVLETKPLQLPEISQVGSCDPEGSTFAYDELFFDEASE 217
Query: 396 --------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKA 441
L + LDEV+DP N+GAIIRSAYF G +++ +N APLS VSK
Sbjct: 218 RRTSFIQKENKKFPLGLYLDEVSDPHNMGAIIRSAYFLGVDFMIMSRRNCAPLSPTVSKT 277
Query: 442 SSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK----------AVPLNEIPPGQP 491
SSG+ EL+ + + + F S + GW + VS + A L+ + P
Sbjct: 278 SSGATELLPIFTVDKPLDFFSKSQKEGWTFVSAGVSKQNKFAKNKKIEAQDLHGMLKELP 337
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
ILV+G+EG G+R ++ LV IP G G+ +V
Sbjct: 338 VILVVGNEGEGVRTNLQMRSDFLVEIP---------------QGRGAAGT-------RSV 375
Query: 552 ESLNVSVAAGVLLHHLV 568
+SLNVSVA +LL+ ++
Sbjct: 376 DSLNVSVATAILLNSIL 392
>gi|260550512|ref|ZP_05824722.1| rRNA methylase [Acinetobacter sp. RUH2624]
gi|424057182|ref|ZP_17794699.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
nosocomialis Ab22222]
gi|260406427|gb|EEW99909.1| rRNA methylase [Acinetobacter sp. RUH2624]
gi|407440715|gb|EKF47232.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
nosocomialis Ab22222]
Length = 249
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 132/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRESLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD I A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPYPTLNEKDLDQILAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + P ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESALPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|242791156|ref|XP_002481702.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
gi|218718290|gb|EED17710.1| RNA methyltransferase, putative [Talaromyces stipitatus ATCC 10500]
Length = 536
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 128/503 (25%), Positives = 205/503 (40%), Gaps = 120/503 (23%)
Query: 132 ASLKSNKVKEAKRLGKVISAEASRSSWEASAERLEDVSSSHSSWEESAKRLEKVTTTNIG 191
ASL SN + A++ + +ASR ++ S + +D S+ SS+ E + N
Sbjct: 55 ASLTSNIARAARKSAAI---DASRQKYDRSLK--DDRRSTASSFREDPR--------NNR 101
Query: 192 RSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSF 251
S + T R+ + +R ++ +R +K+ G + +RR
Sbjct: 102 PSYDRDTPAKRRSNKDEKRDYTLNWLNRGRVSKSSGEGYVNSHKKLGKGSGNIKRRRG-- 159
Query: 252 RRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMV--GEGLYGVGPVLAALSAKTR 309
+D + PE + N P+T+P E +YG+ V AA+ R
Sbjct: 160 -KDHEPTDAVPERIKTN-----------VPVPATIPYTTPASEFIYGLSAVDAAIRCTRR 207
Query: 310 EFYALYVQEGLSLSSNNRKKKDKKGYEKVL--KMAENMGISIKETS---KHDLNMVVGNR 364
+ Y LY+ + + ++ EK+ K+A GI +K L+ + R
Sbjct: 208 KLYMLYIYQAVG---------EELSPEKIALRKLALARGIQVKMAFAGWDKLLDKMSAGR 258
Query: 365 PHQGLVLDASPLEMVKIKELDPISADED-------------------------------- 392
PH G++L+ASP+ + + L P+ + D
Sbjct: 259 PHNGVILEASPMPQIPVTSLRPVPSPIDDFFEVGLDKQSVEEAEVNGSSNRIARVERFEE 318
Query: 393 ----QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
+ L + LD + DP N+GA+IRSAY+ G +VL +NSAPL+ V KAS+G+ E
Sbjct: 319 VEKSRFPLVILLDGILDPGNMGAVIRSAYYLGVDALVLTGRNSAPLTPVTIKASAGAAEN 378
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGG----SVSSKAV------------------PLNEI 486
M + + + F+ S ENGWR +VS A P +
Sbjct: 379 MTIFKAKSEIDFIRRSRENGWRFYAADSPQNVSDLAATHGTLADYTATVAANGSSPSASL 438
Query: 487 PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG-NIPVDVTAGEIDDVDADGNHGSAEQF 545
PT+L+LG+EGTGL P ++ V IPG I D+ + VD
Sbjct: 439 LTSAPTVLMLGNEGTGLLPRIKAQADGYVSIPGARIRPDLGINDAARVD----------- 487
Query: 546 QSFMAVESLNVSVAAGVLLHHLV 568
SLNVSVAA +L+ +
Sbjct: 488 -------SLNVSVAAALLMEMFM 503
>gi|348522510|ref|XP_003448767.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like
[Oreochromis niloticus]
Length = 379
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/278 (32%), Positives = 138/278 (49%), Gaps = 44/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++GV P AL+ R L+V++G + + KV + A G+ +
Sbjct: 126 EVVFGVAPCFLALTQGRRRVRKLFVKDG--------EASHRASVLKVCEEAHLRGVRVHR 177
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + HQG+ L ASPL + ++ P D A LW+ L+ + DP NLGA
Sbjct: 178 VSRKELDKMSNGGVHQGVCLLASPLSYL-TEDSAPSRKD---APLWLVLERIQDPMNLGA 233
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSAYF G V + + PLS VVSKASSG +E+M + N+ + L E GW+V
Sbjct: 234 ILRSAYFLGVDRVASSLRYTCPLSPVVSKASSGIMEVMGVYGYENLAEMLKLKMEQGWQV 293
Query: 472 LGGSVSSKA----VPL---NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
+G +V +A +P+ ++ +PT+L++G EG GL + +C L+ IP
Sbjct: 294 VG-TVGQEAEVSQMPITKCSDFKMTKPTLLLMGGEGEGLSKELLSTCQTLLTIP------ 346
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
AG + +ESLNVSVA G+
Sbjct: 347 --AGR----------------ELVPGIESLNVSVATGI 366
>gi|336258270|ref|XP_003343952.1| hypothetical protein SMAC_08379 [Sordaria macrospora k-hell]
gi|380089633|emb|CCC12515.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 593
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 112/380 (29%), Positives = 168/380 (44%), Gaps = 85/380 (22%)
Query: 246 KRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPST--VPKMVG--EGLYGVGPVL 301
+RR+SFR + E+ E R R+E +E P + +P + LYG V
Sbjct: 229 ERRDSFRDTRSSTRERRETDRTPRRELFRDNDREETTPKSLSIPYTTAASQFLYGTSVVE 288
Query: 302 AALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV- 360
AAL A R+ Y LY+ G NR+K K + K+A+ + I ++ L M+
Sbjct: 289 AALQAARRKLYKLYIYAGA-----NREKLAKDA--AIQKLAQRNKVEIVFVNEDGLKMMD 341
Query: 361 --VGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQAS---------------------- 395
G+RPH G +L+ASPL + L + + A+ Q +
Sbjct: 342 KMSGSRPHNGYILEASPLPQPPVISLGEVVEAETGQGTTGYKVVLGHQSHEEALINGKSD 401
Query: 396 -----------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
L V +D++ DP NLGAI+RS F GA+ V + + SA ++ V KAS+G
Sbjct: 402 FVSASSTTHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRESASMTPVALKASAG 461
Query: 445 SLELMELRYCNNMMQFLVSSAENGW-------RVLGGSVSSKAVPLNEIPP-----GQPT 492
+ E + L ++ +FL S ENGW R G K + L+EI P
Sbjct: 462 ASESLALFSVGHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLRTNPC 521
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
IL+LGSEG GL ++ + V IP +++ G + ++
Sbjct: 522 ILLLGSEGEGLPGQIKSKADYEVNIP-----NMSGGTV--------------------ID 556
Query: 553 SLNVSVAAGVLLHHLVGHQV 572
SLNVSVAAG+L + QV
Sbjct: 557 SLNVSVAAGLLTSAFMKGQV 576
>gi|336324793|ref|YP_004604759.1| putative RNA methyltransferase [Corynebacterium resistens DSM
45100]
gi|336100775|gb|AEI08595.1| putative RNA methyltransferase [Corynebacterium resistens DSM
45100]
Length = 316
Score = 122 bits (306), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 98/311 (31%), Positives = 147/311 (47%), Gaps = 51/311 (16%)
Query: 258 RTEKPEYQRWNRQEN--SGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALY 315
RT P ++R E SG E A + E + G PV+ L A ALY
Sbjct: 43 RTYHPAHRRKKEAERRASGAHNRHERADAV------ELVVGRNPVVECLHANV-PATALY 95
Query: 316 VQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASP 375
V EG K D++ E V A+ GIS+ E S+ +L+ + GN HQG+ L P
Sbjct: 96 VAEGT--------KNDERLSEAVHTCADR-GISVLEVSRQELDRMTGNGMHQGIGLQIPP 146
Query: 376 LEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLS 435
+ ++++L +A+ + VALD +TDP+NLGA+IRS FG GVV+ + SA ++
Sbjct: 147 YKYTEVEDLIESTANAATPGMIVALDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVT 206
Query: 436 GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILV 495
V + S+G+ + + NM++ L + G++V+G L+ P ++V
Sbjct: 207 AVAWRTSAGTAARLPVAKATNMVRTLKQFQQAGYQVVGLDAGGDHT-LDTYDGTTPVVIV 265
Query: 496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA--VES 553
+GSEG GL LV +C ++ +P MA VES
Sbjct: 266 VGSEGKGLSRLVSETCDTIMSVP------------------------------MAKWVES 295
Query: 554 LNVSVAAGVLL 564
LN SVAAGV+L
Sbjct: 296 LNASVAAGVVL 306
>gi|445437597|ref|ZP_21441146.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC021]
gi|444753633|gb|ELW78272.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC021]
Length = 249
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 132/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRESLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD I A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQILAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + P ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESALPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|355568606|gb|EHH24887.1| hypothetical protein EGK_08620 [Macaca mulatta]
Length = 353
Score = 122 bits (306), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 141/296 (47%), Gaps = 53/296 (17%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGLSPCLLALRAARRSVARLLLQAGKAGLQGERAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL E S +D LW+ L+ + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWSEAGEASPGDDPQQLWLVLEGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKN-----------SAPLSGVVSKASSGSLELMELRYC 454
P+N GA++RSA+F G V+ +N + + +VSKAS+G++E+M++
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNRHGRPSFSMCPNLEMQPIVSKASAGAMEVMDVFST 215
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKA-------VPLN---EIPPGQPTILVLGSEGTGLR 504
+++ FL + A+ GW V G +A +P+ E P +PT+LVLG+EG+GL
Sbjct: 216 DDLTGFLQTKAQQGWLVAGTVGCPRAEDPQSSEIPITSCLEFPWDRPTLLVLGNEGSGLS 275
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
V+ SC L+ I +P + Q +ESLNVSVAA
Sbjct: 276 QEVQASCQLLLTI---LP---------------------RRQLPPGLESLNVSVAA 307
>gi|293610125|ref|ZP_06692426.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|375136852|ref|YP_004997502.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
PHEA-2]
gi|292827357|gb|EFF85721.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|325124297|gb|ADY83820.1| putative tRNA/rRNA methyltransferase [Acinetobacter calcoaceticus
PHEA-2]
Length = 249
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 132/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD I A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQILAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + P ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESAMPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|379706704|ref|YP_005261909.1| putative TRNA/RRNA METHYLTRANSFERASE [Nocardia cyriacigeorgica
GUH-2]
gi|374844203|emb|CCF61265.1| putative TRNA/RRNA METHYLTRANSFERASE [Nocardia cyriacigeorgica
GUH-2]
Length = 323
Score = 122 bits (305), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 133/281 (47%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G + D++ E V ++A + G
Sbjct: 80 PEMV----LGRNPVVECLRAGV-PASALYVAVG--------TENDERLTESV-RIAADTG 125
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E + DL+ + N HQGL L P +L D Q +L VALD ++DP
Sbjct: 126 ISILEVPRTDLDRLSANGLHQGLALQVPPYRYAHPDDLAERVRDSGQPALIVALDNISDP 185
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L A
Sbjct: 186 RNLGAVIRSVAAFGGQGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDFAA 245
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++++G L+E PT++V+GSEG GL LV +C ++ IP P
Sbjct: 246 KGYQIVGLDAGGDTT-LDEFDGTAPTVIVVGSEGKGLSRLVRETCDAILSIPMAGP---- 300
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 301 ------------------------VESLNASVAAGVVLAEV 317
>gi|197119261|ref|YP_002139688.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
bemidjiensis Bem]
gi|197088621|gb|ACH39892.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
bemidjiensis Bem]
Length = 248
Score = 121 bits (304), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 136/283 (48%), Gaps = 43/283 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ PV+ AL +RE + L+V S++ R EK+LK+A I +++
Sbjct: 5 EIIYGLNPVMEALRG-SREIHELFVA---GTSADKR-------LEKLLKLAAERKIPVRQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE-LDPISADEDQASLWVALDEVTDPQNLG 410
K DLN + G HQG+ L P + + L+ + D L + LD V DP NLG
Sbjct: 54 REKGDLNRLCGTEHHQGVALKVEPFPYADLDDVLEGLQGTRD--GLILVLDSVQDPHNLG 111
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A+IRSA GA+ VV+ +A ++ V K+S+G+ E + + N+ Q L S + G+
Sbjct: 112 ALIRSAACAGANAVVIPKDRAAGVTAVAEKSSAGATETISVAQVTNISQALESLKKAGFW 171
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
+ G S++ + G P LV+G EG G+RPLV + C +V IP
Sbjct: 172 IYGADGSARHTLYQQDFTG-PVALVIGGEGEGIRPLVRKGCDAVVSIP------------ 218
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
Q V SLN SVA G+ L +V +VS
Sbjct: 219 --------------LQG--GVNSLNASVAGGIFLFEVVRQRVS 245
>gi|255947260|ref|XP_002564397.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211591414|emb|CAP97644.1| Pc22g03560 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 597
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 94/342 (27%), Positives = 148/342 (43%), Gaps = 77/342 (22%)
Query: 283 PSTVPKMV--GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P T+P E +YG G V AAL R+ Y LY+ + K +K L
Sbjct: 251 PDTIPYTTPASEFIYGTGAVEAALRCSRRQLYKLYIYQSTEEELTAAKVTIRK-----LA 305
Query: 341 MAENMGISIKETSKHDL-NMVVGNRPHQGLVLDASPLEMVKIK---------------EL 384
+++N+ + + L + + RPH G +L+ASPL + ++ EL
Sbjct: 306 LSKNVAVKMAFAGWDRLMDKMSAGRPHNGCILEASPLPKLPVRSLQAVPSISEEYFRTEL 365
Query: 385 DPISADE-------------------------DQASLWVALDEVTDPQNLGAIIRSAYFF 419
P + +E + + + LD V D N+GAIIRS+YF
Sbjct: 366 APQTREEAAVNGTDDRIQIHHPSPPPHGTEQRHRYPIVLLLDGVVDTGNMGAIIRSSYFL 425
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV------LG 473
G +VL +NSAPLS + K+S+G+ E M + + N + F+ S +NGWR L
Sbjct: 426 GVDAIVLAGRNSAPLSPITIKSSAGAAENMPILHVKNEVDFIQRSQQNGWRFYAADAPLP 485
Query: 474 GSVSSKAVPLNEIPPG-------QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
GSV +P + G P+++++GSE TGL ++ ++ IPG +
Sbjct: 486 GSVQLDHIPADGDQSGAKLPITTAPSVIMMGSEATGLSSHIKSHANAIISIPGARQSSIL 545
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
E D ++SLNVSVAA +L+ +
Sbjct: 546 GVESDPA----------------RIDSLNVSVAAALLMEKFL 571
>gi|425742160|ref|ZP_18860282.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-487]
gi|425489061|gb|EKU55384.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-487]
Length = 249
Score = 121 bits (304), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 85/268 (31%), Positives = 132/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GISI++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISIQKASRESLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD I A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQILAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L + RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + P ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESALPIQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|302530721|ref|ZP_07283063.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
gi|302439616|gb|EFL11432.1| tRNA/rRNA methyltransferase [Streptomyces sp. AA4]
Length = 318
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 136/280 (48%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ ++R + +++A + GISI E
Sbjct: 71 ELIAGRNPVVEALRADV-PGTALYV--ALNIDIDDR-------VNEAVRLAGDKGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P E +L + D L+VALD VTDP+NLGA
Sbjct: 121 IPREELDRKTNRAMHQGLGLQVPPFEYAHPDDLMQAARDSGNTPLFVALDGVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L + SA ++ V + S+G+ + + N+ + L + A G +
Sbjct: 181 VIRSAAAFGAQGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLRAWASKGLMI 240
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G G+V A+ L P ++VLGSEG GL LV +C V IP + A
Sbjct: 241 VGLDADGTVDIDALELA----ADPLVVVLGSEGRGLSRLVRETCDATVSIP------MAA 290
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G VESLN SVAAGVLL +
Sbjct: 291 G----------------------VESLNASVAAGVLLAEV 308
>gi|340923665|gb|EGS18568.1| putative mitochondrial large ribosomal RNA protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 638
Score = 121 bits (304), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 145/330 (43%), Gaps = 83/330 (25%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AAL + R+ Y LY+ ++ ++KD G +L +A + G+ + S
Sbjct: 322 LYGKSVVEAALLSARRKLYHLYM-------TDLHQRKDPSGSRAMLALARSKGVPVTILS 374
Query: 354 KHD---LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS--------------- 395
D ++ + RPH G VL+ASPL + L P+ + ED
Sbjct: 375 DADKRLMDKMAEGRPHNGFVLEASPLPQPPVTALGPLPSSEDGVPKPITEIPVTLDHQSA 434
Query: 396 ------------------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
L + LD + DP NLG+I+R++ F GAS V + S
Sbjct: 435 EDASINGTSPSLPLPSPLIPGYNPLILILDRILDPGNLGSILRTSLFLGASAVGITRHGS 494
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV-------PLN 484
APLS V KASSG+ E + L ++ FL ++ +NGW V +V L+
Sbjct: 495 APLSPVTLKASSGAAESLPLFIIPSLPHFLTTTRQNGWTVFAACARDPSVRKNRRHWDLD 554
Query: 485 EIPPGQP-----TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNH 539
++ +P +LVLGSEG GL + + V +P G
Sbjct: 555 DVRREEPLRKGGCVLVLGSEGEGLERATVKKADYEVAVP------------------GGG 596
Query: 540 GSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
G+A++ + VESLNV VAAG+++ +G
Sbjct: 597 GAAQR----VGVESLNVGVAAGLVVEAFMG 622
>gi|50310205|ref|XP_455122.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644258|emb|CAG97829.1| KLLA0F00946p [Kluyveromyces lactis]
Length = 400
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 106/369 (28%), Positives = 162/369 (43%), Gaps = 71/369 (19%)
Query: 229 AEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPK 288
A E+ + ++K++ + R + + K E R +R E + + P+ +
Sbjct: 65 AREKNARLNNGGSDPFDKKKKYYDRIKQEESSKREQFRSHRSEYTKMHPLQGLKPNPLVD 124
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
V +G V++AL+AK RE++ G L++ ++ + I
Sbjct: 125 YV----FGTNSVISALTAKKREYFVKLHHYG-PLNT------------QIQSLCSKNNIQ 167
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL----------DPISADEDQA---- 394
+E KH LN+ H +VL+ PL+ ++ L D D DQA
Sbjct: 168 TEEVDKHRLNLYTNYAVHNNVVLECKPLQPPELSHLGLVNHEACTFDKSEIDYDQAVNTR 227
Query: 395 -----------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
L + LDEV DP N+GAIIRSAYF GA +VL KN APLS VVSK SS
Sbjct: 228 EKFMTNDNKKNPLGIYLDEVVDPHNVGAIIRSAYFLGADFMVLSHKNCAPLSPVVSKVSS 287
Query: 444 GSLELMELRYCNNMMQFLVSSAEN-GWRVLGG--SVSSKA--VPLNEIP---PGQPTILV 495
G++EL+ + +QF S ++ GW + S+S K + +NE+ P +LV
Sbjct: 288 GTMELLPIFTTAKPLQFFEKSKQDGGWMFVTSHMSISQKGNHLTMNELSGMLNELPVVLV 347
Query: 496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLN 555
+G+EG G+R + V IP D T G ++SLN
Sbjct: 348 VGNEGNGVRTNLLNRSDFTVEIP--FGRDPTEGR-------------------NTIDSLN 386
Query: 556 VSVAAGVLL 564
VSVA +L+
Sbjct: 387 VSVATALLI 395
>gi|404443878|ref|ZP_11009043.1| rRNA methylase [Mycobacterium vaccae ATCC 25954]
gi|403654813|gb|EJZ09711.1| rRNA methylase [Mycobacterium vaccae ATCC 25954]
Length = 314
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D++ E V +MA + GISI E
Sbjct: 71 EIVLGRNPVVECLRAGV-PATALYVALG--------TDSDERLTESV-QMAADRGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P +L + + +L VALD ++DP+NLGA
Sbjct: 121 VPRHDLDRIAANGLHQGIALQVPPYNYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVVL + SA ++ V + S+G+ + N+ + L A+ G +V
Sbjct: 181 IVRSVSAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++EI PTI+V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDADGDTT-IDEIDGLSPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 291 -------------------TESLNASVAAGVVL 304
>gi|113954303|ref|YP_730838.1| RNA methyltransferase [Synechococcus sp. CC9311]
gi|113881654|gb|ABI46612.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
CC9311]
Length = 589
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 80/239 (33%), Positives = 128/239 (53%), Gaps = 11/239 (4%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
E++P + + L+G AAL A R + ++ L +S + ++L
Sbjct: 239 ESSPHAAEAVADDLLWGRHATQAALEA-GRPIHRIWCTSELRSASK---------FLQLL 288
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
K A++ G+ ++E + L + G HQG+VL + E +++L + D+A L +A
Sbjct: 289 KDAKSSGVLVEEVTWARLGQLTGGAVHQGIVLQTAAAETFDLEDLVKGCSALDEAPLLLA 348
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQ 459
LD +TDP NLGAI+RSA GA GVVL + SA L+G V+K ++G+LE + + N+ +
Sbjct: 349 LDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNR 408
Query: 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
L + +G+RV+ G + L E+ P ++V GSEG GL L R C L+RIP
Sbjct: 409 SLETLKSSGYRVI-GLAEEGDLTLEEVDLDGPLVIVTGSEGQGLSMLTRRHCDQLIRIP 466
>gi|424745462|ref|ZP_18173725.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-141]
gi|422942155|gb|EKU37216.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-141]
Length = 249
Score = 121 bits (303), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/268 (31%), Positives = 133/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ ++LD I ++ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVLNEQDLDKILSETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+PL + P ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESALPLQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|350294256|gb|EGZ75341.1| hypothetical protein NEUTE2DRAFT_104981 [Neurospora tetrasperma
FGSC 2509]
Length = 634
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 122/436 (27%), Positives = 190/436 (43%), Gaps = 99/436 (22%)
Query: 192 RSLEESTKTFSRTEEHRERVVDMSTGHRNVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSF 251
R+ + FSR + ER V+++ R+ E E ME RR+SF
Sbjct: 226 RAFRDDDNGFSR-KPREERTVELNEELRD------AIDEPYPEPMEP--------RRDSF 270
Query: 252 R-----------------RDVKART-EKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG-- 291
R RD+++ T E+ E R R+E + ++P
Sbjct: 271 RVSRSERREQRPERRDSFRDIRSSTRERRETDRTPRRELHRDPDTETPKSLSIPYTTAAS 330
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ LYG V AAL + R+ Y LY+ G +N K +K+ + + + + E
Sbjct: 331 QFLYGTSVVEAALQSARRKLYKLYIYAG----ANREKLAKDAAIQKLAQRNKVETVFVNE 386
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPL----------------------EMVKIKELDPISA 389
++ + G+RPH G +L+ASPL E + + D ++A
Sbjct: 387 EGLKMMDKMSGSRPHNGYILEASPLPQPPSGQGTTGYKVVLGHQSHEEALINGKSDFVAA 446
Query: 390 DE-DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
L V +D++ DP NLGAI+RS F GA+ V + ++SA L+ V KAS+G+ E
Sbjct: 447 SSATHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKASAGASES 506
Query: 449 MELRYCNNMMQFLVSSAENGW-------RVLGGSVSSKAVPLNEI----PPGQ-PTILVL 496
+ L +++ +FL S ENGW R G K + L+EI P G+ P IL+L
Sbjct: 507 LTLFSIDHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKNPCILLL 566
Query: 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNV 556
GSEG GL ++ + V IP +++ G + ++SLNV
Sbjct: 567 GSEGEGLPGQIKSKADYEVNIP-----NMSGGTV--------------------IDSLNV 601
Query: 557 SVAAGVLLHHLVGHQV 572
SVAAG+L + QV
Sbjct: 602 SVAAGLLTSAFMKGQV 617
>gi|114797823|ref|YP_761366.1| RNA methyltransferase [Hyphomonas neptunium ATCC 15444]
gi|114737997|gb|ABI76122.1| RNA methyltransferase, TrmH family, group 3 [Hyphomonas neptunium
ATCC 15444]
Length = 269
Score = 120 bits (302), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 94/278 (33%), Positives = 145/278 (52%), Gaps = 47/278 (16%)
Query: 248 RNSFRR----DVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAA 303
RN +R DV R +PE QR++R++ G W L+G V+AA
Sbjct: 3 RNHPKRPPNTDVATRPGRPENQRFSRRDEEGGPVW---------------LWGTHAVMAA 47
Query: 304 LSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVG 362
L+ R+F+ L L++ N +K G IS + T+K N +
Sbjct: 48 LANPARKFHTL-------LATENAAQKLPAGV-----------ISPQLATAKEIDNRLPP 89
Query: 363 NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGAS 422
HQG+ L A PLE ++ D I+A A+ LD+V+DP NLGAI RSA FG
Sbjct: 90 GAVHQGIALRADPLEEAILE--DVIAAG---ATRIAVLDQVSDPHNLGAIFRSAAAFGFE 144
Query: 423 GVVLCAKNSAPLSGVVSKASSGSLE-LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV 481
G+VL +N+ P++G+V+K+++G++E + E+R N+ + L AE + +G + S
Sbjct: 145 GLVLQTRNAPPITGIVAKSAAGAIETVTEIRAV-NIARALEQLAEADFHTVGLAGESTRS 203
Query: 482 PLNEIPPGQPTI-LVLGSEGTGLRPLVERSCTHLVRIP 518
L+E G + +VLG+EG+GLRP V ++C+ L RIP
Sbjct: 204 -LDEAVKGAAKVAIVLGAEGSGLRPAVAKACSELARIP 240
>gi|162447016|ref|YP_001620148.1| TrmH family RNA methyltransferase [Acholeplasma laidlawii PG-8A]
gi|161985123|gb|ABX80772.1| RNA methyltransferase, TrmH family [Acholeplasma laidlawii PG-8A]
Length = 230
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 87/275 (31%), Positives = 133/275 (48%), Gaps = 47/275 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG + A+ K R Y LY+ E K K + EN IS + T+
Sbjct: 3 IYGKNVIKEAVLNK-RPIYKLYLDE-------------KSSDSKFINFLENNNISYELTN 48
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K LN + N H G+V D + + ELD + D+ + ++ LDEV DP NLGAI+
Sbjct: 49 KGQLNNLTDNAVHNGVVADVKDYQYL---ELD-VVLDKTRRQRFLMLDEVQDPHNLGAIL 104
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RS GV++ K+ PL+GVV+K SSG++E ++L +N+ Q ++ + + V+G
Sbjct: 105 RSVEATNYDGVIISKKHQVPLTGVVAKTSSGAIEHVKLILVSNLYQTILKLQKEDFLVVG 164
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ + A EIP Q ++++G+EG GLRPL+++ C LV IP
Sbjct: 165 TAGEATA-SYKEIPKNQNLLIIMGNEGFGLRPLIKKGCDLLVSIP--------------- 208
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V SLNVSVA +LL+ +
Sbjct: 209 -------------MLGKVNSLNVSVATALLLYETI 230
>gi|190345104|gb|EDK36926.2| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
6260]
Length = 395
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 165/351 (47%), Gaps = 91/351 (25%)
Query: 267 WNRQENSGR--TTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTRE-FYALYVQEGLSLS 323
++ Q S R T+++ S P V E +YG PVLAAL+ R+ F L+V
Sbjct: 76 YSSQRESSRETTSYRPTGMSRNP--VYEYIYGTHPVLAALTGGKRDSFNRLFV------- 126
Query: 324 SNNRKKKDKKGYEKVLKMAENMGISI-KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK 382
K+G ++L A+ +GISI + SK D+N++ N H G+VL+ PLE+ I
Sbjct: 127 -----FNPKEGTSQILSQAKKLGISIVTKQSKGDMNILADNGVHNGVVLETKPLEIPFIH 181
Query: 383 EL---DPISADEDQA----------------------SLWVALDEVTDPQNLGAIIRSAY 417
EL DP + + D + L + LD +TDPQNLGAI+R+AY
Sbjct: 182 ELGVCDPEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAY 241
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS-- 475
+ G +V+ ++A L V +KA++GSL+LM + ++ + F+ NGW V+ S
Sbjct: 242 YMGVDFIVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQ 301
Query: 476 -------------------VSSKAVP---LNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
+ +K + L+ I P +LV+GSEG G+R TH
Sbjct: 302 TSESLQQDQKSKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVR-------TH 354
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
L ++ + V ++ G D+ V+SLNVSVA +++
Sbjct: 355 L-QLRSDYLVGLSKGREDE----------------GIVDSLNVSVACALMV 388
>gi|146423438|ref|XP_001487647.1| hypothetical protein PGUG_01024 [Meyerozyma guilliermondii ATCC
6260]
Length = 395
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 105/351 (29%), Positives = 165/351 (47%), Gaps = 91/351 (25%)
Query: 267 WNRQENSGR--TTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTRE-FYALYVQEGLSLS 323
++ Q S R T+++ S P V E +YG PVLAAL+ R+ F L+V
Sbjct: 76 YSSQRESSRETTSYRPTGMSRNP--VYEYIYGTHPVLAALTGGKRDSFNRLFV------- 126
Query: 324 SNNRKKKDKKGYEKVLKMAENMGISI-KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK 382
K+G ++L A+ +GISI + SK D+N++ N H G+VL+ PLE+ I
Sbjct: 127 -----FNPKEGTSQILSQAKKLGISIVTKQSKGDMNILADNGVHNGVVLETKPLEIPFIH 181
Query: 383 EL---DPISADEDQA----------------------SLWVALDEVTDPQNLGAIIRSAY 417
EL DP + + D + L + LD +TDPQNLGAI+R+AY
Sbjct: 182 ELGVCDPEAEEYDVSITNEILNSQTPYTHKCQREAAYPLGIYLDGITDPQNLGAIVRTAY 241
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS-- 475
+ G +V+ ++A L V +KA++GSL+LM + ++ + F+ NGW V+ S
Sbjct: 242 YMGVDFIVVPEHDTARLGPVAAKAAAGSLDLMNIFQTSDSLGFVERVRRNGWNVISTSSQ 301
Query: 476 -------------------VSSKAVP---LNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
+ +K + L+ I P +LV+GSEG G+R TH
Sbjct: 302 TSESLQQDQKLKHQKVQQQLGTKFIDPSELSTIANESPVLLVMGSEGAGVR-------TH 354
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
L ++ + V ++ G D+ V+SLNVSVA +++
Sbjct: 355 L-QLRSDYLVGLSKGREDE----------------GIVDSLNVSVACALMV 388
>gi|172041345|ref|YP_001801059.1| rRNA methylase [Corynebacterium urealyticum DSM 7109]
gi|448824269|ref|YP_007417438.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7111]
gi|171852649|emb|CAQ05625.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7109]
gi|448277766|gb|AGE37190.1| putative rRNA methylase [Corynebacterium urealyticum DSM 7111]
Length = 317
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 134/273 (49%), Gaps = 43/273 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PV+ L A ALYV EG + N+ + + + + + GIS+ E S
Sbjct: 74 VVGRNPVVECLHANV-PASALYVAEG---TGNDDR------LSEAVHICSSRGISVLEVS 123
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +L+ + GN HQG+ L P + + +L +AD L VALD +TDP+NLGA+I
Sbjct: 124 RQELDRMTGNGLHQGIGLQIPPYKYADVHDLIERAADSATPGLVVALDNITDPRNLGAVI 183
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RS FG GVV+ + SA ++ V + S+G+ + + NM++ L +NG++V+G
Sbjct: 184 RSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARLPVAKATNMVRALKQFQQNGYQVVG 243
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ L+ PT++V+GSEG GL LV + ++ IP
Sbjct: 244 LDAGGEHT-LDTYDGTTPTVVVVGSEGKGLSRLVGETADTILSIP--------------- 287
Query: 534 DADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 288 ---------------MADKVESLNASVAAGVVL 305
>gi|427423050|ref|ZP_18913216.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-136]
gi|425700150|gb|EKU69741.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-136]
Length = 237
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 30/239 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +D + +K+L++AE GIS+++ S+ L + G HQG+V P + K+LD I
Sbjct: 19 KGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLPFHQGVVAAVRPHPTLNEKDLDQI 78
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
A+ A L +ALD+VTDP NLGA IR+A G V++ SA L+ K ++G E
Sbjct: 79 LAETPDA-LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAE 137
Query: 448 LMELRYCNNMMQFLVSSAENGW-RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
++ N+ + L E RV+G + A+P+ + P ++V+G+E TGLRP+
Sbjct: 138 KVKFIQVTNLARTLAHLKETTHTRVIGTMLDESAMPIQKCDFSGPVVIVMGAEDTGLRPI 197
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ C H V IP + GN ++SLNVSVA G+ L+
Sbjct: 198 TQAQCDHKVYIPMS----------------GN------------LQSLNVSVATGMALY 228
>gi|145222039|ref|YP_001132717.1| RNA methyltransferase [Mycobacterium gilvum PYR-GCK]
gi|315446219|ref|YP_004079098.1| rRNA methylase [Mycobacterium gilvum Spyr1]
gi|254800512|sp|A4T5L0.1|Y1447_MYCGI RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
gi|145214525|gb|ABP43929.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium gilvum
PYR-GCK]
gi|315264522|gb|ADU01264.1| rRNA methylase, putative, group 3 [Mycobacterium gilvum Spyr1]
Length = 314
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D++ E V +MA + GISI E
Sbjct: 71 EIVLGRNPVVECLRAGV-PATALYVALG--------TDADERLTESV-QMAADRGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P +L + + +L VALD ++DP+NLGA
Sbjct: 121 VQRHDLDRMAANGLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVVL + SA ++ V + S+G+ + N+ + L A+ G +V
Sbjct: 181 IVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++EI PTI+V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDAGGDTT-IDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 291 -------------------TESLNASVAAGVVL 304
>gi|441517187|ref|ZP_20998925.1| putative RNA methyltransferase [Gordonia hirsuta DSM 44140 = NBRC
16056]
gi|441455871|dbj|GAC56886.1| putative RNA methyltransferase [Gordonia hirsuta DSM 44140 = NBRC
16056]
Length = 321
Score = 120 bits (300), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 138/276 (50%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV ++ +++R ++ + +A +MGISI E
Sbjct: 76 EYVVGRNPVVECLRAEI-PATALYVMS--TIDADDRVRE-------AVAIAGDMGISILE 125
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
SK +L+ + N HQGL L +L + D Q +L VALD +TDP+NLGA
Sbjct: 126 ASKPELDRITVNGLHQGLALQVPEYSYAHPDDLLADALDSGQPALLVALDNITDPRNLGA 185
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + LV A+ G ++
Sbjct: 186 VIRSVAAFGGQGVLIPQRRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLVDWAKAGVQI 245
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 246 VGLDADGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRETCDSILSIP-------MAGD-- 295
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L
Sbjct: 296 -------------------VESLNASVAAGVVLAEF 312
>gi|321472146|gb|EFX83117.1| hypothetical protein DAPPUDRAFT_302082 [Daphnia pulex]
Length = 308
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 140/294 (47%), Gaps = 45/294 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ P+ AL AK R +Y + L S K+ ++ +E EN+ +S
Sbjct: 46 LYGIHPISCALEAKRRTIETVYYRRDLLNHSGRVKEILERCWE------ENIKTLPIPSS 99
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS--ADEDQAS--LWVALDEVTDPQNL 409
K D +V +PHQGL+ + L + I+ + E +AS +W+ L+E+ DP N
Sbjct: 100 KID-TIVPKGKPHQGLLAKTTRLYYIPTPCTQSIAQLSSEKEASKPVWLLLNEIQDPMNF 158
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
G+I+RSAYF G + + + S L+ VVSKASSG +ELM + N +F E+ W
Sbjct: 159 GSILRSAYFMGCDKIFVTSHKSCSLTPVVSKASSGVMELMPIHSIMNTTEFCQLLKESKW 218
Query: 470 RVLG--------GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNI 521
V+G + K P+ PT+++LG+EG GL + CTH +
Sbjct: 219 DVVGTGSKTDESNGTACKPTPVGSFQLSNPTLIILGNEGRGLPDELVDLCTHQIY----- 273
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
V++ N V+S+NVS AA V+LH ++ + SNN
Sbjct: 274 -----------VESRSNLNK--------NVDSMNVSAAAAVILHSVLNN--SNN 306
>gi|121708633|ref|XP_001272196.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
NRRL 1]
gi|119400344|gb|EAW10770.1| RNA methyltransferase, TrmH family family [Aspergillus clavatus
NRRL 1]
Length = 495
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 146/318 (45%), Gaps = 64/318 (20%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AAL R+ Y LY+ +G + + + K +K L +++N+ + +
Sbjct: 184 LYGTSAVEAALRCGRRQMYRLYIYQGDTDELGSNRSKLRK-----LALSKNIKVKMAYAG 238
Query: 354 KHDL-NMVVGNRPHQGLVLDASPLEMVKIKELDPI-SADEDQASLWVA------------ 399
L + + RPH G +LDASPL ++ IK L + S D ++ + +A
Sbjct: 239 WDRLFDQMSSGRPHNGCILDASPLPVLPIKSLCAVPSLDVNEFRVTLAAQSREEALVNST 298
Query: 400 --------------------LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS 439
LD + D NLG IIRSAY+ G +V +N APLS V
Sbjct: 299 NDRIEIRHPPNRRRYPVIILLDGIVDKGNLGGIIRSAYYLGIDAIVFAGRNCAPLSPVTI 358
Query: 440 KASSGSLELMELRYCNNMMQFLVSSAENGWR-------VLGGS-VSSKAVPLNEIPPGQ- 490
KAS+G+ E M + N + F+ S NGW+ VLG + + + + + P Q
Sbjct: 359 KASAGAAENMPMLKVTNEVDFIQQSKANGWQFYAADAPVLGATYLDNFDMAMTRNPLTQA 418
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
P++L+LGSEG GL P ++ +V IPG A D+D
Sbjct: 419 PSVLMLGSEGFGLSPHIKSQADSIVSIPG-----ARAPTEWGTDSDPAR----------- 462
Query: 551 VESLNVSVAAGVLLHHLV 568
V+SLNVSVAA +L+ +
Sbjct: 463 VDSLNVSVAAAILMEMFL 480
>gi|357589625|ref|ZP_09128291.1| hypothetical protein CnurS_05474 [Corynebacterium nuruki S6-4]
Length = 317
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 96/304 (31%), Positives = 151/304 (49%), Gaps = 45/304 (14%)
Query: 261 KPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGL 320
K + ++ + +SGR K+ PST P++V G PV+ L A ALYV
Sbjct: 48 KYKAKKQKERRDSGRQARKD--PSTQPELV----VGRNPVIECLHAHV-PATALYV---- 96
Query: 321 SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVK 380
++ + N D + E V +E GI + E S+ +L+ + GN HQG+ L P + +
Sbjct: 97 AIGTGN----DDRLSEAVHTSSER-GIPVLEVSRDELDRMTGNGMHQGIGLQVPPYQYAE 151
Query: 381 IKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK 440
+ +L + D + L V LD +TDP+NLGA+IRS FG GVV+ + SA ++ V +
Sbjct: 152 VDDLIQRAQDSGRPGLVVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWR 211
Query: 441 ASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEG 500
S+G+ + + N+++ L +NG++V+G + L+ P ++V+GSEG
Sbjct: 212 TSAGTAARLPVARATNLVRALKQFQQNGYQVVGLDAGGRHT-LDTYDGTTPVVVVVGSEG 270
Query: 501 TGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
GL LV +C ++ IP AG+ VESLN SVAA
Sbjct: 271 KGLSRLVGETCDDILSIP-------MAGK---------------------VESLNASVAA 302
Query: 561 GVLL 564
GV+L
Sbjct: 303 GVVL 306
>gi|389641267|ref|XP_003718266.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
gi|351640819|gb|EHA48682.1| hypothetical protein MGG_00735 [Magnaporthe oryzae 70-15]
gi|440466838|gb|ELQ36082.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Magnaporthe
oryzae Y34]
gi|440481987|gb|ELQ62516.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Magnaporthe
oryzae P131]
Length = 616
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/314 (29%), Positives = 141/314 (44%), Gaps = 76/314 (24%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK--- 350
LYG V L + R+ Y LY+ +GL+ S N + K+A+ G+ I
Sbjct: 306 LYGRSVVEETLRSSRRKLYHLYIYDGLNRSRNPNDVV-------IEKLAQKRGVKITKLG 358
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS---------------ADED--- 392
E + ++ + RPH VL+ASP+ I+ L P+S ED
Sbjct: 359 EGHQRLMSKMSEGRPHNNFVLEASPVPQPPIEALGPLSEVASRPGFEVSLGHQTAEDLEI 418
Query: 393 -------------QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS 439
L + LD + DP NLG I+R+A F G S VV+ +NSA L+ V
Sbjct: 419 NGSSNFVETEGGKHQPLVLLLDRILDPGNLGNILRTASFLGVSAVVISQRNSATLTPVAL 478
Query: 440 KASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKA--------VPLNEIPP--G 489
KA++G+ E + L C+N FL +S E+GW++ S++ + ++ P
Sbjct: 479 KAAAGASETLPLFACDNPASFLHNSKESGWKIYAAVAPSRSRKKSEQDVYDIEDLDPLAT 538
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+GSEG GL +++ H V IP ++ G H
Sbjct: 539 DPCVLVVGSEGEGLPTMIKTKSHHAVTIP---------------NSSGAH---------- 573
Query: 550 AVESLNVSVAAGVL 563
++SLNVSVAAG+L
Sbjct: 574 TIDSLNVSVAAGLL 587
>gi|262280749|ref|ZP_06058532.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262257649|gb|EEY76384.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 249
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 133/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ ++LD I ++ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVLNEQDLDQILSETPNA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ +A L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+PL + P ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESALPLQKCDFSGPVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|256374514|ref|YP_003098174.1| TrmH family RNA methyltransferase [Actinosynnema mirum DSM 43827]
gi|255918817|gb|ACU34328.1| RNA methyltransferase, TrmH family, group 3 [Actinosynnema mirum
DSM 43827]
Length = 321
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 137/295 (46%), Gaps = 50/295 (16%)
Query: 275 RTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG 334
R +AAP TV G PV+ L A ALYV L + +++R
Sbjct: 66 RRKAADAAPETV--------AGRNPVVECLRAGI-PATALYV--ALGIDADDR------- 107
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ +++A + GIS+ E + +L+ + G HQGL L P E + ++L + + +
Sbjct: 108 VAEAVQLAASRGISVLEVQRGELDRITGGAMHQGLGLQVPPYEYAEPRDLLRAAKESGRP 167
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD VTDP+NLGA++RSA FGA GVVL + SA ++ V + S+G+ + +
Sbjct: 168 PLLVALDGVTDPRNLGAVVRSAAAFGAHGVVLPQRRSASMTAVAWRTSAGTAARLPIAVA 227
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L AE G V+G P ++V+GSEG GL LV +C
Sbjct: 228 TNLTRQLREWAEAGLMVIGLDADGDVDVDGLDLATGPLVVVVGSEGRGLSRLVRETCDQT 287
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLLHHL 567
V IP MA VESLN SVAAGV+L +
Sbjct: 288 VSIP------------------------------MASNVESLNASVAAGVVLAEV 312
>gi|70993278|ref|XP_751486.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
Af293]
gi|66849120|gb|EAL89448.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
Af293]
gi|159125580|gb|EDP50697.1| RNA methyltransferase, TrmH family family [Aspergillus fumigatus
A1163]
Length = 484
Score = 119 bits (299), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 95/336 (28%), Positives = 144/336 (42%), Gaps = 73/336 (21%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
++ P T P E +YG V AAL + R+ Y LY+ +G +N + + + L
Sbjct: 158 DSVPYTTP--ASEFIYGTSAVEAALRSGRRQLYKLYIYQG-----DNEELGPTRSMLRKL 210
Query: 340 KMAENMGISIKETSKHDL-NMVVGNRPHQGLVLDASPLEMVKIKEL---DPISADEDQAS 395
+++N+ + + L + + RPH G +LDASPL + +K L + ADE +
Sbjct: 211 ALSKNIKVKMAYAGWDRLFDQMSSGRPHNGCILDASPLPQLPVKSLCATPTLGADEFRVV 270
Query: 396 LW------------------------------VALDEVTDPQNLGAIIRSAYFFGASGVV 425
L + LD +TD NLG IIRSAY+ G +V
Sbjct: 271 LAPQSKEEAMVNSTNNRVPVRHLPGQSRYPVVLLLDGITDTGNLGGIIRSAYYLGIDAIV 330
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
+N APLS + KAS+G+ E M L +N + F+ S NGWR + +P
Sbjct: 331 FAGRNCAPLSPITIKASAGAAENMPLIKVSNEVDFIQQSKANGWRFF---AADAPLPGTR 387
Query: 486 IPPGQ-------------PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
P P++++LGSEG+GL ++ +V IPG E D
Sbjct: 388 YPDTTGDIDLTRNAVTQAPSVIMLGSEGSGLSGHIKSHADSIVSIPGARNATEWGYEKDP 447
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLNVSVAA +L+ +
Sbjct: 448 A----------------RVDSLNVSVAAAILMEQFL 467
>gi|85098226|ref|XP_960584.1| hypothetical protein NCU01404 [Neurospora crassa OR74A]
gi|28922085|gb|EAA31348.1| predicted protein [Neurospora crassa OR74A]
gi|38566824|emb|CAE76131.1| related to rRNA (guanine-N1-)-methyltransferase [Neurospora crassa]
Length = 644
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 105/372 (28%), Positives = 165/372 (44%), Gaps = 77/372 (20%)
Query: 249 NSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG--EGLYGVGPVLAALSA 306
+SFR + E+ E R R+E + ++P + LYG V AAL +
Sbjct: 285 DSFRDTRSSTRERRETDRTPRRELHRDLDTETPKSLSIPYTTAASQFLYGTSVVEAALQS 344
Query: 307 KTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPH 366
R+ Y LY+ G +N K +K+ + + + + E ++ + G+RPH
Sbjct: 345 ARRKLYKLYIYAG----ANREKLAKDAAIQKLAQRNKVETVFVNEEGLKMMDKMSGSRPH 400
Query: 367 QGLVLDASPLEMVKIKEL-DPISADEDQAS------------------------------ 395
G +L+ASPL + L + + A+ Q +
Sbjct: 401 NGYILEASPLPQPPVISLGEVVDAESGQGTTGYKVVLGHQSHEEALINGKSDFVAASSAT 460
Query: 396 ---LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR 452
L V +D++ DP NLGAI+RS F GA+ V + ++SA L+ V KAS+G+ E + L
Sbjct: 461 HKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKASAGASESLTLF 520
Query: 453 YCNNMMQFLVSSAENGW-------RVLGGSVSSKAVPLNEI----PPGQ-PTILVLGSEG 500
+++ +FL S ENGW R G K + L+EI P G+ P IL+LGSEG
Sbjct: 521 SIDHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKNPCILLLGSEG 580
Query: 501 TGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
GL ++ + V IP +++ G + ++SLNVSVAA
Sbjct: 581 EGLPGQIKSKADYEVNIP-----NMSGGTV--------------------IDSLNVSVAA 615
Query: 561 GVLLHHLVGHQV 572
G+L + QV
Sbjct: 616 GLLTSAFMKGQV 627
>gi|323136537|ref|ZP_08071619.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
49242]
gi|322398611|gb|EFY01131.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. ATCC
49242]
Length = 278
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 136/272 (50%), Gaps = 30/272 (11%)
Query: 253 RDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFY 312
+D + R E+P R + + R ++ +P V +YG V AL A+ R+
Sbjct: 8 KDRQPRRERPGPVRDRPRGDPSRVPFRGPSPEVV------TIYGAHAVREALKARRRKLL 61
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVL 371
ALY E ++ +A G+ + DL+ +G+ HQGL+L
Sbjct: 62 ALYATE--------------TALPRIADLARGAGVEPRLVDGRDLSRHLGDEAVHQGLLL 107
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+A PL + +++P ++ + +ALD++TDP N+GAI+R+A FG +++ ++S
Sbjct: 108 EARPLPEAGVGDIEP------KSGIVLALDQITDPHNVGAILRTACAFGVDALIITERHS 161
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
+GV++KA+SG+LE + + N+ + L G+ V+G S A PL I +P
Sbjct: 162 PEFTGVLAKAASGALEHVTIVSVVNLARALDELRGAGYGVVGLD-SEGAEPLETIALPKP 220
Query: 492 TILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
LVLG+EG GLR L C + R +PG I
Sbjct: 221 LALVLGAEGKGLRRLTRERCDAIARLDLPGPI 252
>gi|433650457|ref|YP_007295459.1| rRNA methylase, putative, group 3 [Mycobacterium smegmatis JS623]
gi|433300234|gb|AGB26054.1| rRNA methylase, putative, group 3 [Mycobacterium smegmatis JS623]
Length = 314
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 133/276 (48%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V K+A + GISI E
Sbjct: 71 EIVLGRNPVLECLRAAV-PATALYVVLG--------AEADERLTESV-KLAADSGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P + +L + + +L VALD ++DP+NLGA
Sbjct: 121 VPRHDLDRIAANGLHQGIALQVPPYQYAHPDDLLAQATTDGAPALMVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVV+ + SA ++ V + S+G+ + + N+ + L + A+ G +V
Sbjct: 181 IVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKNWADAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDADGDTT-IDELDCTGPMVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 291 -------------------TESLNASVAAGVVLAEI 307
>gi|258573751|ref|XP_002541057.1| predicted protein [Uncinocarpus reesii 1704]
gi|237901323|gb|EEP75724.1| predicted protein [Uncinocarpus reesii 1704]
Length = 582
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 104/351 (29%), Positives = 141/351 (40%), Gaps = 88/351 (25%)
Query: 283 PSTVPKM--VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P +VP V E +YG V AA+ A R+ YALY+ + S+ K + + K
Sbjct: 222 PRSVPHTNAVSEFIYGYSAVRAAVLASRRKIYALYIYDADPSST----KWAQPEVNALQK 277
Query: 341 MAENMGISIKETSKHDLNMV---VGNRPHQGLVLDASPLEMVKIKEL------------- 384
A G ++K S L M+ +RPH G V + SPL + L
Sbjct: 278 HATVAGATVKLVSGTWLKMMNRMSDDRPHNGYVAEVSPLPKLPATSLKAVTTLPATHFTV 337
Query: 385 ---------------------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAY 417
D IS + + LD + DP NLGAIIRSAY
Sbjct: 338 NVASQPKEEADINGSDGHIPLMSQRNTDHISQQTPRYPFILLLDGILDPGNLGAIIRSAY 397
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVS 477
FFGA + ++NSAPLS V KAS+G+ E M L ++ F+ +S NGWR
Sbjct: 398 FFGADAIAFSSRNSAPLSAVTIKASAGAAENMPLISIHDPATFIDTSRGNGWRFFAAEPP 457
Query: 478 SKAVP--------------------LNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ L+ P P +L+LGSEG GL ++R V I
Sbjct: 458 ASTFDDSQAQVDTMLTKTPILSPHNLSAEPRKSPCVLMLGSEGYGLSKYLKRKADAFVAI 517
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
PG AG DD V+SLNVSVA+ +L +
Sbjct: 518 PGA----QAAGLSDDP---------------AGVDSLNVSVASALLCQEFL 549
>gi|93004896|ref|YP_579333.1| RNA methyl transferase TrmH [Psychrobacter cryohalolentis K5]
gi|92392574|gb|ABE73849.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Psychrobacter
cryohalolentis K5]
Length = 256
Score = 119 bits (299), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 134/275 (48%), Gaps = 37/275 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
YG+ + A L + + +L+VQ+G S+ + ++ A + GISI+ T
Sbjct: 7 FYGIHAIDALLEYRPLDGLSLFVQQGRETDSH---------VQSIMAQARDNGISIQPTQ 57
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L + G+ HQG+VL+A PL LD ++ +D L + LD++TD N GA +
Sbjct: 58 KDKLTQLCGSPQHQGVVLNARPLGFADEGLLDTLAGRDD--CLLLVLDQITDAHNFGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G V+ ++A L+ V+K S G+ E+M + N+ + L G V G
Sbjct: 116 RTAVAMGVDAVICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
++++ A P++ T +++GSEG G+R L SC LV IP
Sbjct: 176 TALNANAKPIHAADLTGKTAIIMGSEGEGMRRLTTESCDELVYIP--------------- 220
Query: 534 DADGN-HGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GN HG+ ++SLNVSVA G+ L+ +
Sbjct: 221 -MSGNEHGN---------LQSLNVSVATGMALYEI 245
>gi|444914991|ref|ZP_21235130.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Cystobacter
fuscus DSM 2262]
gi|444714268|gb|ELW55155.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Cystobacter
fuscus DSM 2262]
Length = 273
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 113/225 (50%), Gaps = 10/225 (4%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PVL +L A + L++ EG + K ++L A G+ ++
Sbjct: 25 VYGVNPVLESLRAHAQRVERLFITEG---------QLAAKAAAEILSRAREAGLRVERVP 75
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L + HQG+V + E + +L +A +Q LWV LD + DP N GAII
Sbjct: 76 RERLAAMAEGGVHQGVVAELRGFEYAEFSDLLESAAQSEQPPLWVVLDGIQDPHNFGAII 135
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA+ GA GVV+ + P++GVV+KAS+G++E + N+ + L E G +
Sbjct: 136 RSAHALGAHGVVIAKDRAVPVTGVVAKASAGAVEHCPIARVVNLSRALEELKEAGVWIAA 195
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
SK VPL P +V+G+EG G+RP V C ++IP
Sbjct: 196 ADPHSK-VPLWSARLDGPLAVVVGAEGAGVRPGVLEHCDFRLQIP 239
>gi|425746097|ref|ZP_18864129.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-323]
gi|425486746|gb|EKU53111.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-323]
Length = 232
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 123/239 (51%), Gaps = 30/239 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +D + +K+L++AE GISI++ S+ L + G HQG+V P + K+LD +
Sbjct: 15 KGRDDQRLQKILQLAEPFGISIQKASRDSLEKLAGLPFHQGVVAAVRPHPTLNEKDLDEL 74
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
A L +ALD+VTDP NLGA IR+A G V++ SA L+ K ++G E
Sbjct: 75 MQQSPDA-LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAE 133
Query: 448 LMELRYCNNMMQFLVSSAENGW-RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
++ N+ + L ++ RV+G + KA+P+++ P ++V+G+E TGLRP+
Sbjct: 134 KVKFIQVTNLARTLAHLKDSTHTRVIGTMLDEKALPIHQCDFNGPVVIVMGAEDTGLRPI 193
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ C H V IP +G++ +SLNVSVA G+ L+
Sbjct: 194 TQSQCDHTVYIP-------MSGDL---------------------QSLNVSVATGMALY 224
>gi|295660999|ref|XP_002791055.1| RNA methyltransferase [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280982|gb|EEH36548.1| RNA methyltransferase [Paracoccidioides sp. 'lutzii' Pb01]
Length = 623
Score = 119 bits (298), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 108/387 (27%), Positives = 165/387 (42%), Gaps = 110/387 (28%)
Query: 282 APSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQE-----GLSLSSNNRKKKDKKG 334
AP ++P E +YG VLAAL R+ Y LY+ E L L N ++
Sbjct: 252 APKSIPYTTAASEFIYGASAVLAALRCGRRKLYKLYIYETPDKVSLRLGRNPTREP---M 308
Query: 335 YEKVLKMAENMGISIKETSKH---DLNMVVGNRPHQGLVLDASPLEMVKIKELDPI---- 387
++ ++K G+ +K+ + + L+ + G RPH G +L+AS L + + L P+
Sbjct: 309 FDTIIKFGLAAGVCVKQVAGNWPKLLDKMSGGRPHNGCILEASQLPKLPVDSLLPVLSPS 368
Query: 388 -----------SADEDQAS-----------------------------LWVALDEVTDPQ 407
SA+E + + + LD + DP
Sbjct: 369 ETHFNASVCQQSAEEAEVNGTSGRIPRAGYRDENSPLAENLIMPTRYPFALFLDGIRDPG 428
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
N+GAIIRSAY+FG V++ ++SAP+S V KAS+G+ E + + N F+ SS N
Sbjct: 429 NVGAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNPTLFVKSSHTN 488
Query: 468 GWRVLGGS------------------------VSSKAVPLNEIPPGQPTILVLGSEGTGL 503
GW+ VS+K LNE P +L+LGSE GL
Sbjct: 489 GWKFFAAEAPAAANASQQTLEAPTEQVLSRREVSTK---LNE----APCVLMLGSEEQGL 541
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVL 563
+ + V IPG I TA ++D V+SLNVSVA+ +L
Sbjct: 542 PRSIRQQADGAVVIPGAI----TASNVEDR---------------AGVDSLNVSVASALL 582
Query: 564 LHHLVGHQVSN---NSHIEDSSTATVD 587
+G SN ++ E++ +TVD
Sbjct: 583 CEAFLGDPSSNKQDSTPAEEALMSTVD 609
>gi|402770951|ref|YP_006590488.1| TrmH family RNA methyltransferase [Methylocystis sp. SC2]
gi|401772971|emb|CCJ05837.1| RNA methyltransferase, TrmH family, group 3 [Methylocystis sp. SC2]
Length = 270
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 83/260 (31%), Positives = 131/260 (50%), Gaps = 30/260 (11%)
Query: 265 QRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSS 324
+R ++ R+ ++ AAP V LYG PV AAL+A+ R+ LY E
Sbjct: 17 RRAAAAQSETRSPFRSAAPDLV------TLYGAHPVRAALTARRRKLLTLYATE------ 64
Query: 325 NNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKE 383
++ ++A G+ + DL +G HQGL+L+A PL I +
Sbjct: 65 --------TALPRINELARAAGLEPRLVDARDLERRLGPEAVHQGLLLEARPLPEADISD 116
Query: 384 LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
+ +S + +ALD++TDP N+GAI+R+A F V++ ++S SGV++KA+S
Sbjct: 117 IVSVS------GVVLALDQITDPHNVGAILRTACAFNVDAVIVTERHSPEFSGVLAKAAS 170
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G+LE + N+ + L A++G+ +G S A L+ IP +P LVLG+E GL
Sbjct: 171 GALEFTTIVSVVNLARALDELADHGYARVGLD-SDGAESLSIIPLSKPLALVLGAEDKGL 229
Query: 504 RPLVERSCTHLVR--IPGNI 521
R L C + R +PG I
Sbjct: 230 RRLTRERCDAVARLDLPGPI 249
>gi|71064641|ref|YP_263368.1| RNA methyltransferase [Psychrobacter arcticus 273-4]
gi|71037626|gb|AAZ17934.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Psychrobacter arcticus
273-4]
Length = 256
Score = 119 bits (298), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 37/275 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
YG+ + A L + + +L+VQ+G S+ + ++ A + GISI+ T
Sbjct: 7 FYGIHAIDALLEYRPLDGLSLFVQQGRETDSH---------VQAIMAQARDNGISIQPTQ 57
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L + G+ HQG+VL+A PL LD ++ ED L + LD++TD N GA +
Sbjct: 58 KDKLTQLCGSPQHQGVVLNARPLGFADEGLLDTLAGRED--CLLLVLDQITDAHNFGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G V+ ++A L+ V+K S G+ E+M + N+ + L G V G
Sbjct: 116 RTAVAMGVDAVICPKHHAASLTPTVAKVSVGAAEMMPIVSVTNLARTLTKIKNAGVFVFG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
++++ A PL+ +++GSEG G+R L SC LV IP
Sbjct: 176 TALNADAKPLHTADLTGKIAIIMGSEGEGMRRLTTESCDELVYIP--------------- 220
Query: 534 DADGN-HGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GN HG+ ++SLNVSVA G+ L+ +
Sbjct: 221 -MSGNEHGN---------LQSLNVSVATGMALYEI 245
>gi|159470575|ref|XP_001693432.1| predicted protein [Chlamydomonas reinhardtii]
gi|158282935|gb|EDP08686.1| predicted protein [Chlamydomonas reinhardtii]
Length = 145
Score = 119 bits (297), Expect = 6e-24, Method: Composition-based stats.
Identities = 65/142 (45%), Positives = 92/142 (64%), Gaps = 8/142 (5%)
Query: 363 NRPHQGLVLDASPLEMVKIKELDPISADEDQAS-------LWVALDEVTDPQNLGAIIRS 415
+RPHQGLVLD +PL + E P + A+ +W+ALDEV DPQNLGA++RS
Sbjct: 4 DRPHQGLVLDVAPLTWTHMDEFPPAAQAAAAAAEAGAPPPVWLALDEVVDPQNLGAVVRS 63
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE-NGWRVLGG 474
AY GA+GV+ C++N APLS VVSKAS+G++E + L C+N+ + L+ + + GW VLG
Sbjct: 64 AYCLGAAGVLACSRNCAPLSPVVSKASAGAVEALPLHSCHNLPRTLMDARDLKGWAVLGA 123
Query: 475 SVSSKAVPLNEIPPGQPTILVL 496
+ + P+ + PTILVL
Sbjct: 124 AAGGGSEPVGRVAVTGPTILVL 145
>gi|402758730|ref|ZP_10860986.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. NCTC 7422]
Length = 249
Score = 118 bits (296), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 131/268 (48%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDGLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDELLQQSPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L + RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+++ P ++V+G+E TGLRP+ + C H V IP G++
Sbjct: 181 EKALPIHQCDFNGPVVIVMGAEDTGLRPITQSQCDHTVYIP-------MLGDL------- 226
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 --------------QSLNVSVATGMALY 240
>gi|400287259|ref|ZP_10789291.1| RNA methyltransferase [Psychrobacter sp. PAMC 21119]
Length = 256
Score = 118 bits (296), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 133/273 (48%), Gaps = 37/273 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
YG+ + A L + + +L+VQ+G S+ R ++ A + GISI+ T
Sbjct: 7 FYGIHAIDALLEHRPLDGLSLFVQQGRESDSHVRA---------IMAQAADNGISIQPTQ 57
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L + G+ HQG+VL+A PL LD I E L + LD++TD N GA +
Sbjct: 58 KDKLTQLCGSPQHQGVVLNARPLGFADEGLLDIIIGREQ--CLLLVLDQITDAHNFGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G VV ++A L+ V+K S G+ E+M + N+ + L G V G
Sbjct: 116 RTAVAMGVDAVVCPKHHAASLTPTVAKVSVGAAEMMPIISVTNLARTLSQIKNAGVFVFG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+++++A P++E T +++GSEG G+R L SC LV IP
Sbjct: 176 TALNAEAKPIHEADLTGKTAMIMGSEGEGMRRLTTESCDELVYIP--------------- 220
Query: 534 DADGN-HGSAEQFQSFMAVESLNVSVAAGVLLH 565
GN HG+ ++SLNVSVA G+ L+
Sbjct: 221 -MSGNEHGN---------LQSLNVSVATGMALY 243
>gi|403368189|gb|EJY83925.1| hypothetical protein OXYTRI_18340 [Oxytricha trifallax]
Length = 875
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 112/195 (57%), Gaps = 15/195 (7%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSN---NRKKKDKKGYEKVLKMAENMGIS 348
E +YG+ PV+A LSA+ R+ LY LS++ NRK K E++ KMA + GI
Sbjct: 529 EYIYGINPVMACLSAQRRQIQKLY----LSITEKGGENRKSHPK--IEQIAKMASSQGIK 582
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA--DEDQASLWVALDEVTDP 406
+K K L+ ++PHQ +V+ AS LE +KI++ I A + + ++ LD++TDP
Sbjct: 583 LKYLHKVKLSGFTMSKPHQNVVIKASKLEYIKIRKDSDIEALKEPKKGQFYLFLDQITDP 642
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL---RYCNNMMQFLVS 463
QN G+I+R+A F G G+++ N+ L+ VSK SSG+LE + L ++ N MQ
Sbjct: 643 QNFGSILRTAMFIGVDGIIVNQNNACGLTPTVSKVSSGALEFIPLYSTKFVKNFMQDAQK 702
Query: 464 SAENGWRVLGGSVSS 478
+N ++++ + S
Sbjct: 703 GLQN-FKIISTDIES 716
>gi|300790491|ref|YP_003770782.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
gi|384154022|ref|YP_005536838.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei S699]
gi|399542369|ref|YP_006555031.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei S699]
gi|299800005|gb|ADJ50380.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei U32]
gi|340532176|gb|AEK47381.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei S699]
gi|398323139|gb|AFO82086.1| RNA methyltransferase YjfH [Amycolatopsis mediterranei S699]
Length = 318
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 95/280 (33%), Positives = 136/280 (48%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ ++R +++A + GISI E
Sbjct: 71 ELIAGRNPVVEALRAGV-PATALYV--ALNIEIDDR-------VNDAVRLAGDKGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P E +L + + + L+VALD VTDP+NLGA
Sbjct: 121 IPREELDRKTNRAVHQGLGLQVPPFEYAHPDDLMAAARNSGEVPLFVALDGVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L + SA ++ V + S+G+ + + N+ + L + A +G +
Sbjct: 181 VIRSAAAFGAHGVLLPERRSAGMTAVAWRTSAGTAAKLPIAVATNLTRQLKAWANDGLML 240
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G GSV + L P ++VLGSEG GL LV +C V IP + A
Sbjct: 241 VGLDADGSVDIDELELA----ADPLVIVLGSEGRGLSRLVRETCDATVSIP------MAA 290
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G VESLN SVAAGVLL +
Sbjct: 291 G----------------------VESLNASVAAGVLLAEV 308
>gi|406036256|ref|ZP_11043620.1| putative tRNA/rRNA methyltransferase [Acinetobacter parvus DSM
16617 = CIP 108168]
Length = 249
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQLMQQSPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHMRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+ + P ++V+G+E TGLRP+ + C V IP +G++
Sbjct: 181 EKALPIQQCDFNGPVVIVMGAEDTGLRPITQSQCDQTVYIP-------MSGDL------- 226
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 --------------QSLNVSVATGMALY 240
>gi|392383030|ref|YP_005032227.1| rRNA methyltransferase [Azospirillum brasilense Sp245]
gi|356877995|emb|CCC98857.1| rRNA methyltransferase [Azospirillum brasilense Sp245]
Length = 284
Score = 118 bits (295), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 82/234 (35%), Positives = 124/234 (52%), Gaps = 17/234 (7%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI---SIK 350
LYG+ PV AA R + L E + E VL A+ G+ +
Sbjct: 44 LYGLHPVSAAWLNPERRIHRLIATEA-----------GRAALEPVLAQAKARGLQRPGVM 92
Query: 351 ETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
++DL+ M+ HQG+ +DA+PLE I++L AD D ++L V LD+VTDP N+
Sbjct: 93 PADRNDLDRMLPPGAVHQGVAVDAAPLEETGIEDLC-AEADSDPSALIVVLDQVTDPHNV 151
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GA++RSA FGA VV+ +N+ +GV++K++SG+LE + L N+ + L + G+
Sbjct: 152 GAVLRSASAFGAKAVVVTERNAPETTGVLAKSASGALESVPLVRVTNLARALADLQQAGF 211
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
+G + S K+ L + T LVLG+EG GLR L C + R+P PV
Sbjct: 212 WTVGLAESGKST-LAQCNLTGRTALVLGAEGAGLRRLTMERCDIIARLPTQGPV 264
>gi|322420271|ref|YP_004199494.1| TrmH family RNA methyltransferase [Geobacter sp. M18]
gi|320126658|gb|ADW14218.1| RNA methyltransferase, TrmH family, group 3 [Geobacter sp. M18]
Length = 249
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 134/278 (48%), Gaps = 43/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ P + AL +R+ + L+V S++ R EK+LK+A + +++
Sbjct: 5 EIIYGLNPAMEALRG-SRKIFELFVA---GTSADKR-------LEKLLKLAAERKVPVRQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE-LDPISADEDQASLWVALDEVTDPQNLG 410
K DLN + G HQG+ L P + + L+ + + + L + LD V DP NLG
Sbjct: 54 REKGDLNRLCGTEHHQGVALKVEPFPYADLDDVLEGLQGEGN--GLILVLDSVQDPHNLG 111
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A+IRSA GA+ VV+ +A ++ VV KAS+G+ E + + N+ Q L + + G+
Sbjct: 112 ALIRSAACAGANAVVIPKDRAAGVTAVVEKASAGATETVAVAQVTNISQALETLKKAGFW 171
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
+ G S+K + G P LV+G EG G+RPLV + C +V IP
Sbjct: 172 IYGADGSAKHTLYQQDFTG-PVALVIGGEGEGIRPLVRKGCDEVVSIP------------ 218
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
Q V SLN SVA G+ L +V
Sbjct: 219 --------------LQG--GVNSLNASVAGGIFLFEVV 240
>gi|399156889|ref|ZP_10756956.1| RNA methyltransferase [SAR324 cluster bacterium SCGC AAA001-C10]
Length = 256
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 126/276 (45%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ PVL AL R LY++ + K ++ +AE + + + E
Sbjct: 14 ELLYGIQPVLGALQHNKRLLNQLYLK---------KDADSSKRLREIRLLAEEIKLPVSE 64
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
L + + HQG+VL L + + + L V LD++ DP NLGA
Sbjct: 65 VPVSQLMAMCPDAVHQGVVLRCGFLPFTSMPDFS--QSAVATHPLLVVLDQIEDPHNLGA 122
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIR+ FFG + VV+ +S+ L+ V SKAS+G LE + + N+ +FL G+ V
Sbjct: 123 IIRTCGFFGVNAVVVTQDHSSGLTPVASKASAGVLEWLPVISVTNLARFLNEQKTKGFWV 182
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G + + +P ILVLG+EG G+R LV++ C LV IPGN
Sbjct: 183 AGLEGEAPDC-FTDFSRDRPLILVLGNEGRGIRRLVQKHCDWLVSIPGN----------- 230
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V SLNVS AA V L+HL
Sbjct: 231 -----------------HEVSSLNVSNAAAVALYHL 249
>gi|350568949|ref|ZP_08937347.1| RNA methyltransferase [Propionibacterium avidum ATCC 25577]
gi|348661192|gb|EGY77888.1| RNA methyltransferase [Propionibacterium avidum ATCC 25577]
Length = 320
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 90/276 (32%), Positives = 133/276 (48%), Gaps = 42/276 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL A YV EG S R+ +L A + GI + +
Sbjct: 73 EWVIGRNPVLEALHAGL-PVRTAYVAEGAEHDSRLRE---------ILSFAADHGIVLMQ 122
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ + G HQG+ L E + ++ A + L VALD++TDP+NLGA
Sbjct: 123 ATRGELDRMTGGSNHQGVALRLPEYEYATVDDIIDAGAQAYRGGLVVALDKITDPRNLGA 182
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA GV++ ++ SA ++ K S+G+ + + +N+ Q L AE GW +
Sbjct: 183 IIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMASNLNQALGKFAEAGWMI 242
Query: 472 LGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+G ++ +A PG P +LV+GSEG GL L +SC L IP
Sbjct: 243 VG--LAGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLASIP----------- 289
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ +D VESLN SVAA + L+
Sbjct: 290 ---ISSD--------------VESLNASVAASIALY 308
>gi|351696663|gb|EHA99581.1| rRNA methyltransferase 1, mitochondrial [Heterocephalus glaber]
Length = 328
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/248 (31%), Positives = 127/248 (51%), Gaps = 44/248 (17%)
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
+ AE I + + L+ + + HQG+ ++ +PL E S +D LW+
Sbjct: 62 RTAEARDIPVLRPRRQKLDALCHYQMHQGVCMEVTPLRPQPYTEPGEASPSDDPQQLWLV 121
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKN--------SAPLSGVVSKASSGSLELMEL 451
L+ + DP+NLGA++RSA+F G +++ +N + PL+ +VSKAS+G++E+M++
Sbjct: 122 LEGLQDPRNLGAVLRSAHFLGVDKIIISRRNRHGHPLFPACPLTPIVSKASAGAMEVMDV 181
Query: 452 RYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGT 501
N++ FL + A GW V G GS++ + ++IP +PT+LVLG+EG+
Sbjct: 182 FSTNDLPGFLQAKAGQGWLVAGTVGSLAPEISQSSKIPVTSCLEFLWDRPTLLVLGNEGS 241
Query: 502 GLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
GL V+ SC L+ + PG Q +ESLNVSVA
Sbjct: 242 GLSQEVQASCQLLLTVLPGR-------------------------QLPPRLESLNVSVAT 276
Query: 561 GVLLHHLV 568
G+LLH +
Sbjct: 277 GILLHSIC 284
>gi|405945386|gb|EKC17305.1| rRNA methyltransferase 1, mitochondrial [Crassostrea gigas]
Length = 219
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 121/217 (55%), Gaps = 19/217 (8%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE L+G+ PV AL A R+FY L+++E NRK K++ +++++ AE + + +
Sbjct: 7 GEVLFGIHPVSLALRANKRKFYQLFIKE-------NRKCKEEG--KRIIEQAEKLNVPVV 57
Query: 351 ETSKHDLNMVVGNRPHQGLVLDAS--PLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
+K+DL+ + G+RP+QG+ +D S P+ + + +W+ V DP N
Sbjct: 58 TVTKNDLDKLSGSRPNQGICMDVSGLPVSVASTSICWTEIKSRWRYPVWLMPYNVQDPMN 117
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME----LRYCNNMMQFLVSS 464
GAI+R+++F G V+ KNS LS VVSKASSGSLE+ME LR ++++ L +
Sbjct: 118 FGAILRTSFFLGVDRVLTPEKNSCRLSPVVSKASSGSLEVMEGLARLREERDIVEILQNW 177
Query: 465 AENGWRVLGGSVSSKA----VPLNEIPPGQPTILVLG 497
E G +V+G S A PL ++ P +V+G
Sbjct: 178 KEAGGQVVGASTDRSARIPMTPLQDLAVNAPVFIVVG 214
>gi|345561929|gb|EGX45001.1| hypothetical protein AOL_s00173g102 [Arthrobotrys oligospora ATCC
24927]
Length = 990
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/316 (28%), Positives = 137/316 (43%), Gaps = 70/316 (22%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKD---KKGYEKVLKMAENMGIS 348
E LYG A+ K R+ Y LYV GL S +K++ + E + + M +
Sbjct: 281 EFLYGYNICKLAMKEKRRKIYKLYVYTGLMRQSGTIEKENLLRRMAAESRIHVESTMDVG 340
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL----------DPISAD-------- 390
+ L+ + RPH G ++A PLE+ K+ L P+
Sbjct: 341 L-------LDAMSKGRPHNGFAVEAEPLEIPKVGHLVAPSKMGVFNAPVYQSPQYVQIKI 393
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
+D+ + LDEV D N GAI+RSAYF G V + +KNS P + V S++S+G+LE
Sbjct: 394 KGKDRRPFVLVLDEVLDGGNFGAILRSAYFLGVDAVFIVSKNSTPATAVTSRSSAGALEC 453
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVS--------SKAVP--------LNEIPPGQPT 492
++ ++ F+ S ++GW+ G S SK P L + P
Sbjct: 454 IDYYDVGHLSSFISRSQDHGWKFYGAMPSPSQQDLKASKTGPKKWYDMEGLGDPTSRHPV 513
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
LVLG+E GLRP +++ V I A E+D + V+
Sbjct: 514 ALVLGNEAEGLRPSIQKMMDAFVTI-------RRAEEVD-----------------VVVD 549
Query: 553 SLNVSVAAGVLLHHLV 568
SLNV VAA +L H +
Sbjct: 550 SLNVGVAASILTHAFL 565
>gi|352094234|ref|ZP_08955405.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. WH
8016]
gi|351680574|gb|EHA63706.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp. WH
8016]
Length = 609
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 79/239 (33%), Positives = 127/239 (53%), Gaps = 11/239 (4%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
E++P + + L+G AAL A R + ++ L +S + ++L
Sbjct: 240 ESSPHAPEAVADDLLWGRHATQAALEA-GRPIHRIWCTSELRSASK---------FLQLL 289
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
+ A++ G+ ++E + L + G HQG+VL + E + +L + D+A L +A
Sbjct: 290 RDAKSSGVLVEEVTWARLGQLTGGAVHQGIVLQTAAAETFDLGDLVKGCSALDEAPLLLA 349
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQ 459
LD +TDP NLGAI+RSA GA GVVL + SA L+G V+K ++G+LE + + N+ +
Sbjct: 350 LDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNLNR 409
Query: 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
L + +G+RV+G + L E+ P ++V GSEG GL L R C L+RIP
Sbjct: 410 SLETLKSSGYRVIGLAEEGDLT-LEEVDLDGPLVIVTGSEGQGLSMLTRRHCDQLIRIP 467
>gi|255724784|ref|XP_002547321.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
gi|240135212|gb|EER34766.1| hypothetical protein CTRG_01627 [Candida tropicalis MYA-3404]
Length = 434
Score = 117 bits (294), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 97/332 (29%), Positives = 149/332 (44%), Gaps = 94/332 (28%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN-MGISIKET 352
++G V AAL+A R LY + ++ K+AEN GI +
Sbjct: 140 IFGTHAVKAALTAGKRRVLELYTYNNVD--------------PEITKLAENKFGILPRMV 185
Query: 353 -SKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL----------------DPISADEDQA- 394
KH LN++ N H G+VL L++ +KEL D ++E ++
Sbjct: 186 RDKHALNVLCKNGVHNGVVLKTRKLDVPYLKELGRAEDGKYTLTIENSEDGTISEESKSV 245
Query: 395 -------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKA 441
L + LDEVTDPQN+G+++RSA+FFG GV+L ++A L + KA
Sbjct: 246 LRDAKKDETEELYPLMLYLDEVTDPQNMGSVLRSAFFFGIDGVILPDHSTAKLGPIAFKA 305
Query: 442 SSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS---------------------VSSKA 480
S+G+L+L++L + ++F+ S +NGW V+ S ++SK
Sbjct: 306 SAGALDLIDLYQTESSLKFIDSVRKNGWHVISTSGKPDEVSNDELADKHPKTISQLASKF 365
Query: 481 VPLNE---IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+ L + I P +LV+GSEG G+R V+ +LV IP DV
Sbjct: 366 IDLEDLQIILRKSPVMLVIGSEGEGVRTNVKLRSDYLVGIPKYRSDDVI----------- 414
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
V+SLNV VA GV+L + +G
Sbjct: 415 -------------VDSLNVGVATGVILQNCIG 433
>gi|354612666|ref|ZP_09030610.1| RNA methyltransferase, TrmH family, group 3 [Saccharomonospora
paurometabolica YIM 90007]
gi|353222969|gb|EHB87262.1| RNA methyltransferase, TrmH family, group 3 [Saccharomonospora
paurometabolica YIM 90007]
Length = 322
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/280 (32%), Positives = 134/280 (47%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ +L A+ ALYV L++ S++R ++ ++ A + GISI E
Sbjct: 75 EIIAGRNPVVESLRARV-PATALYVA--LNIDSDDRVRE-------AVRTAADHGISILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ G HQGL L P + +L I+ + A L VALD VTDP+NLGA
Sbjct: 125 VPRDELDRKTGGAVHQGLGLQVPPFDYTDADDLLTIARNSGDAPLLVALDGVTDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA FGA GV+L + SA ++ V + S+G+ M + N+ + L + A+ G V
Sbjct: 185 VVRSAAAFGAHGVLLPRRRSASMTAVAWRTSAGAAARMPIGVAPNLTRQLRTWADEGLMV 244
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G GS + L +P ++V+GSEG GL LV +C V IP
Sbjct: 245 AGLDADGSTDIDGLDLAT----EPLVVVVGSEGRGLSRLVRETCDVTVSIP--------- 291
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVA VLL +
Sbjct: 292 -------------------MATGVESLNASVAGAVLLSEV 312
>gi|302653550|ref|XP_003018599.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
0517]
gi|291182256|gb|EFE37954.1| RNA methyltransferase, TrmH family [Trichophyton verrucosum HKI
0517]
Length = 573
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/362 (27%), Positives = 157/362 (43%), Gaps = 86/362 (23%)
Query: 283 PSTVP--KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P +P V E +YG V AA+ R+ + LY+ E S + K ++ + K
Sbjct: 225 PQQIPYSSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAK 284
Query: 341 MAENMGISIKETS---KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI---------- 387
A G +K + K L+ + G RPH G+VL+ASPL + +
Sbjct: 285 YASLAGAQVKHVTGPWKTTLDKMTGKRPHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLA 344
Query: 388 ---SADEDQAS-----------------------LWVALDEVTDPQNLGAIIRSAYFFGA 421
+ E+QA+ + LD + DP NLGAI RSAY+FGA
Sbjct: 345 QLAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGA 404
Query: 422 SGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV 481
+ ++NSAP+S VV KA++G+ E + + ++ F+ +S NGW+ + A
Sbjct: 405 DAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAAD-APDAT 463
Query: 482 PLNE----IP------------PGQPTILVLGSEGTGLRPLVERSCTHLVRIPG----NI 521
+N+ IP P +L+LG EG+GL+ ++ V IPG NI
Sbjct: 464 LVNDYTRKIPVMNSLSSLSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSDNI 523
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ-VSNNSHIED 580
D TAG V SLNVSVA+ +L + + +S++ +D
Sbjct: 524 -RDDTAG----------------------VSSLNVSVASALLCEAFLSRRPLSSSGETQD 560
Query: 581 SS 582
S+
Sbjct: 561 SA 562
>gi|156365597|ref|XP_001626731.1| predicted protein [Nematostella vectensis]
gi|156213618|gb|EDO34631.1| predicted protein [Nematostella vectensis]
Length = 301
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 90/288 (31%), Positives = 142/288 (49%), Gaps = 64/288 (22%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G+GP + ALS+ R+ + +Y+ E +NN +
Sbjct: 63 EFIFGIGPCVLALSSGRRKVFKIYMNE----EANNTTR---------------------- 96
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+++ P V+ M+ K ++ I++ L +ALDE+ DP N GA
Sbjct: 97 -------ILLWKFPVSIFVILMK--RMMSYKGINHIASLH---PLVLALDEIQDPMNFGA 144
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIR+++ G +V+ +NSAPLS VVSKAS+G++E+ + ++ +FL A GW V
Sbjct: 145 IIRTSWLLGVDKIVVPKQNSAPLSPVVSKASAGAMEVFNVYQTPDLPKFLQERAAIGWDV 204
Query: 472 LGG----SVSSKAVPLN--EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
LG + S P+N E +PT+LVLG+EG GLR V++ CT L+ I P
Sbjct: 205 LGAVQPITDDSHHRPVNCAEYSLSKPTVLVLGNEGRGLRNTVQQQCTQLLSI---YP--- 258
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
H + FQS + ++S NVSVAAG+L+ L+ + S
Sbjct: 259 -------------HQAQNSFQS-IDLDSFNVSVAAGILVFSLLKNSYS 292
>gi|403357823|gb|EJY78545.1| hypothetical protein OXYTRI_24296 [Oxytricha trifallax]
Length = 424
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/210 (33%), Positives = 119/210 (56%), Gaps = 15/210 (7%)
Query: 277 TWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSN---NRKKKDKK 333
T +++ + + K E +YG+ PV+A LSA+ R+ LY LS++ NRK K
Sbjct: 63 TASQSSGNPLKKAKPEYIYGINPVMACLSAQRRQIQKLY----LSITEKGGENRKSHPK- 117
Query: 334 GYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA--DE 391
E++ KMA + GI +K K L+ ++PHQ +V+ AS LE +KI++ I A +
Sbjct: 118 -IEQIAKMASSQGIKLKYLHKVKLSGFTMSKPHQNVVIKASKLEYIKIRKDSDIEALKEP 176
Query: 392 DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL 451
+ ++ LD++TDPQN G+I+R+A F G G+++ N+ L+ VSK SSG+LE + L
Sbjct: 177 KKGQFYLFLDQITDPQNFGSILRTAMFIGVDGIIVNQNNACGLTPTVSKVSSGALEFIPL 236
Query: 452 ---RYCNNMMQFLVSSAENGWRVLGGSVSS 478
++ N MQ +N ++++ + S
Sbjct: 237 YSTKFVKNFMQDAQKGLQN-FKIISTDIES 265
>gi|374291034|ref|YP_005038069.1| rRNA methyltransferase [Azospirillum lipoferum 4B]
gi|357422973|emb|CBS85816.1| rRNA methyltransferase [Azospirillum lipoferum 4B]
Length = 299
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 88/260 (33%), Positives = 134/260 (51%), Gaps = 13/260 (5%)
Query: 266 RWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQE-GLSLSS 324
R ++ E RT + P G LYG+ PV AA + R + L E G +
Sbjct: 30 RQDQAEEGARTRRGGQKGNRPPPARGVILYGLHPVAAAWTNPERRIHRLLATESGRAALE 89
Query: 325 NNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
+G ++ S+ + ++ D M+ HQG+V+D SPL + I++L
Sbjct: 90 PAIAAARAQGLQRPEA-------SVVDRTELD-RMLPAGAVHQGMVIDTSPLPELGIEDL 141
Query: 385 DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
ADE A + VALD+VTDP N+GAI+RSA FGA VV+ +++ +GV++K++SG
Sbjct: 142 CNELADETSAVI-VALDQVTDPHNVGAILRSAAAFGARAVVVTERHAPETTGVLAKSASG 200
Query: 445 SLELMELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
+LE + L N+ + L +NG W V G S A L ++ T+LV+G+EG+GL
Sbjct: 201 ALEAVPLVRVTNLARALTDLQQNGFWAV--GLAESGASTLAKLDLTGKTVLVMGAEGSGL 258
Query: 504 RPLVERSCTHLVRIPGNIPV 523
R L C + R+P PV
Sbjct: 259 RRLTMDRCDTIARLPTGGPV 278
>gi|83764572|dbj|BAE54716.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 495
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 146/347 (42%), Gaps = 98/347 (28%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEG--------------LSLSSN 325
+A P T P E +YG V AAL R Y LYV + L+LS N
Sbjct: 166 DAIPYTTP--ASEFIYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKN 223
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+ K G++++L + + RPH G VL+ASPL + ++ L
Sbjct: 224 VKVKMAFGGWDRLL------------------DKMSAGRPHNGCVLEASPLPRLPVRGLK 265
Query: 386 PISA------------------------DEDQASLW---------VALDEVTDPQNLGAI 412
+ + D+ + W + LD + DP NLGAI
Sbjct: 266 SVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAI 325
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSAY+ G ++ +NSAPLS V KAS+G+ E M L +N + F+ S NGW+
Sbjct: 326 IRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKFY 385
Query: 473 GGSV---SSKAVPLNEIPPGQ------------PTILVLGSEGTGLRPLVERSCTHLVRI 517
+SK V I G+ P ++++GSEG+GL ++ +V I
Sbjct: 386 AADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSI 445
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
PG V++D + V+SLNVSVAA +L+
Sbjct: 446 PG-----ARLATPLGVESDPSR-----------VDSLNVSVAAALLM 476
>gi|260949181|ref|XP_002618887.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
gi|238846459|gb|EEQ35923.1| hypothetical protein CLUG_00046 [Clavispora lusitaniae ATCC 42720]
Length = 405
Score = 117 bits (293), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 155/341 (45%), Gaps = 91/341 (26%)
Query: 279 KEAAPSTVPKMVGEGLYGVGPVLAALSAKTRE-FYALYVQEGLSLSSNNRKKKDKKGYEK 337
K A P + E +YG PV+AAL+AK R+ F L++ K+ K
Sbjct: 96 KPAKPKMTLNPLCEYVYGTHPVIAALTAKKRDAFSKLFIHNT------------KEHTPK 143
Query: 338 VLKMAENMGISIKET-SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD----------- 385
+LK+A+N G+ I E +K ++N++ N H G+VL+ PL I L+
Sbjct: 144 ILKLAKNFGVKIIEKDTKGEMNVLSSNGVHNGVVLETKPLSFPLISTLENDFDGETGEYS 203
Query: 386 -----PISADEDQASLWVA---------------LDEVTDPQNLGAIIRSAYFFGASGVV 425
++ DE VA LD +TDPQN+G+IIR+AY+ G +V
Sbjct: 204 VTLMNELTGDEKSFQHTVARHTPHNYKRFPFGLLLDGITDPQNVGSIIRTAYYLGVDFIV 263
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS---------- 475
+ SA L +KAS+G+L+L+ + ++ + FL + ++GW V+ S
Sbjct: 264 IPESESARLGPATAKASAGALDLLTIYKTDDTLTFLDNVRKSGWNVVTTSSRMSEDELNS 323
Query: 476 --------VSSKAVPLNEIPP---GQPTILVLGSEGTGLRPLVERSCTHLVRIP-GNIPV 523
+ +K + E+P P ++V GSEG G+R ++ +LV +P G +
Sbjct: 324 MKSKHRPALENKYIEPQELPALMNQTPMLMVFGSEGAGVRTNIKFRSDYLVGLPKGRL-- 381
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
E D+V V+SLNV VAA +L+
Sbjct: 382 -----ETDEV-----------------VDSLNVGVAASLLV 400
>gi|284029009|ref|YP_003378940.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
17836]
gi|283808302|gb|ADB30141.1| RNA methyltransferase, TrmH family, group 3 [Kribbella flavida DSM
17836]
Length = 320
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 133/285 (46%), Gaps = 46/285 (16%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P E +YG PV+ AL A A+YV EG ++D + E +L E G
Sbjct: 72 PDATVEWVYGRNPVVEALRAGV-PASAIYVAEG--------TERDPRLREALLLSVER-G 121
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
+++ E + +L+ + N HQGL + P E +L + D DQ L VALD VTDP
Sbjct: 122 VALLEVPRQELDRLTSNGVHQGLAIQIPPYEYAHPDDLLRAAYDADQVPLIVALDGVTDP 181
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGAI RSA FGA GV++ + +A +S K S+G+ + + N+ + L S +
Sbjct: 182 RNLGAITRSAAAFGAHGVLVPERRAASVSASAWKTSAGAAARIPVARATNLNRALKSYKD 241
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQ----PTILVLGSEGTGLRPLVERSCTHLVRIPGNIP 522
G V+G + + E+P Q P +LV+GSEG GL LV +C +V IP
Sbjct: 242 AGLFVIGLDMDGEV----ELPDLQAATDPIVLVVGSEGKGLARLVRENCDLIVSIP---- 293
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A ESLN +A GV L+ +
Sbjct: 294 ------------------------MTSATESLNAGIATGVALYEI 314
>gi|365986777|ref|XP_003670220.1| hypothetical protein NDAI_0E01610 [Naumovozyma dairenensis CBS 421]
gi|343768990|emb|CCD24977.1| hypothetical protein NDAI_0E01610 [Naumovozyma dairenensis CBS 421]
Length = 455
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/363 (27%), Positives = 163/363 (44%), Gaps = 92/363 (25%)
Query: 270 QENSGRTTWKEAAPSTVPKM--VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNR 327
Q + RT +++ P + ++ + E +YG VL AL RE++ NR
Sbjct: 120 QYENHRTKFQKVNPLSGLQINPLMEYIYGTNCVLIALKQNKREYF-------------NR 166
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL--- 384
+ ++++++ + + + ET KH LN++ H +VL+ PL++++I L
Sbjct: 167 LWYHGRLNDELIQLCKERDVELIETDKHRLNLLTNYAVHNNVVLETKPLDIMEISHLTMC 226
Query: 385 DPI------------------------------SADEDQASL-----------WVALDEV 403
DP D ++ S+ + LDEV
Sbjct: 227 DPTIGEFGFKEVGFDRNDLTDHTMKYICNFTEGEGDREEVSIKTRNRTKKYPFGLFLDEV 286
Query: 404 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
DP N+GAIIRSAYF G +VL KN APLS VV K SSGS+E M + + +QF
Sbjct: 287 VDPHNMGAIIRSAYFLGVDFIVLTRKNCAPLSPVVLKTSSGSMECMPIFCVDKPLQFFTD 346
Query: 464 SA-ENGWRVLGGSVS-------------SKAVPLNEIPPGQ----PTILVLGSEGTGLRP 505
S E GW + VS K + L+++ G+ P +LV+G+EG G+R
Sbjct: 347 SQREGGWAFITSHVSDANGKIKDLKYIKDKILDLHDL-SGKCLDFPIMLVIGNEGAGVR- 404
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
T+L R+ + V++ G ++ GN V+SLNVSVA +L++
Sbjct: 405 ------TNL-RMRSDFFVEIPFGRKQEILGPGNK------MGLPIVDSLNVSVATALLIN 451
Query: 566 HLV 568
++
Sbjct: 452 SIL 454
>gi|255319722|ref|ZP_05360930.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
radioresistens SK82]
gi|262379996|ref|ZP_06073151.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
gi|255303251|gb|EET82460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
radioresistens SK82]
gi|262298190|gb|EEY86104.1| SpoU rRNA methylase [Acinetobacter radioresistens SH164]
Length = 251
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 133/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K ++ + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+L+ + ++ L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVMNEKDLEQL-LEQTPDVLLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E+ RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEHSQVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+A+PL + P ++V+G+E TGLRP+ + C H V IP AG +
Sbjct: 181 EQALPLQQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIP-------MAGNL------- 226
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 --------------QSLNVSVATGMALY 240
>gi|418055718|ref|ZP_12693772.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
denitrificans 1NES1]
gi|353209996|gb|EHB75398.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
denitrificans 1NES1]
Length = 260
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 20/231 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ V AAL R + L + E ++++ + +I +
Sbjct: 27 LFGLHAVEAALKNPARRIHRLLLTE--------------NAERRLIEAVGPINATIDRVT 72
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
DL+ ++G + HQG+ L+ PL + EL +S + LD+VTDP N+GAI
Sbjct: 73 PRDLDRLLGPDTVHQGVALETEPLPEPQWDELARVS----DGRPLIVLDQVTDPHNVGAI 128
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RS+ FGASG+V+ ++S PL+GV++K++SG+L+L+ + N+ + L + G+ ++
Sbjct: 129 LRSSAVFGASGLVMTHRHSPPLNGVLAKSASGALDLIPVALVANLARALEELRDAGFALV 188
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
G S+ + ++ +PT LV+GSEG GLR L ++C LVRI + PV
Sbjct: 189 GLDGSADTA-IEDLDWSRPTALVMGSEGKGLRELTRKTCDKLVRISTDGPV 238
>gi|421856645|ref|ZP_16289008.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
gi|403187936|dbj|GAB75209.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
radioresistens DSM 6976 = NBRC 102413]
Length = 250
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/270 (30%), Positives = 132/270 (48%), Gaps = 41/270 (15%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K ++ + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+L+ + ++ L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVMNEKDLEQL-LEQTPDVLLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEQSQVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEIDDVDA 535
+A+PL + P ++V+G+E TGLRP+ + C H V IP GN+
Sbjct: 181 EQALPLQQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIPMAGNL-------------- 226
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 ----------------QSLNVSVATGMALY 240
>gi|258512689|ref|YP_003186123.1| TrmH family RNA methyltransferase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479415|gb|ACV59734.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius subsp. acidocaldarius DSM 446]
Length = 255
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 46/269 (17%)
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
VLAAL ++ R ++V EG S G + ++ A + G+ ++ + L+
Sbjct: 29 VLAALESE-RPVNKVWVAEGAS------------GMDAIVAKARSRGVVVQFVPRSRLDE 75
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+ HQG++ +P V + D I D A L V LDE+ DP N GAI+R+A
Sbjct: 76 MAS--AHQGVIAQVAPYAYVDLD--DVIRRDTGFAPLVVVLDEIADPHNFGAILRTAEAS 131
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
GA GVV+ + A ++ VV+KA++G+LE + + N+ Q L + G+ ++G V +K
Sbjct: 132 GAQGVVIGKRRQAQVTDVVAKAAAGALETLPVARVANVAQALQRLKQAGYWIVGADVEAK 191
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNH 539
VP E+ PT +V+GSEG G+R V C LV IP
Sbjct: 192 -VPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIP--------------------- 229
Query: 540 GSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLN SVAAGVLL+ V
Sbjct: 230 -------ILGRVQSLNASVAAGVLLYEAV 251
>gi|226951819|ref|ZP_03822283.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|294649070|ref|ZP_06726515.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
gi|226837359|gb|EEH69742.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ATCC 27244]
gi|292825055|gb|EFF83813.1| tRNA/rRNA methyltransferase [Acinetobacter haemolyticus ATCC 19194]
Length = 248
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 130/268 (48%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVETLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGQPFHQGVVAAVRPHPTLNEKDLDQLMQQSPNA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ +A L+ K ++G E ++ N+ + L + RV+G +
Sbjct: 121 MGVQAVIVPRDRAASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+ + P ++V+G+E TGLRP+ + C V IP +G++
Sbjct: 181 EKALPIQQCDFSGPVVIVMGAEDTGLRPITQSQCDQTVYIP-------MSGDL------- 226
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 --------------QSLNVSVATGMALY 240
>gi|421464645|ref|ZP_15913335.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
radioresistens WC-A-157]
gi|400205398|gb|EJO36379.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
radioresistens WC-A-157]
Length = 251
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 132/268 (49%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K ++ + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHAVESLLELEPERVLTLFTLKGREDQRLQKILELAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+L+ + ++ L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVMNEKDLEQL-LEQTPDVLLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQMKEQSQVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+A+PL + P ++V+G+E TGLRP+ + C H V IP G
Sbjct: 181 EQALPLQQCDLTGPIVIVMGAEDTGLRPITQAQCDHKVYIP----------------MAG 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|326473173|gb|EGD97182.1| hypothetical protein TESG_04597 [Trichophyton tonsurans CBS 112818]
Length = 572
Score = 117 bits (292), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 153/356 (42%), Gaps = 76/356 (21%)
Query: 283 PSTVP--KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P +P V E +YG V AA+ R+ + LY+ E S + K ++ + K
Sbjct: 224 PQQIPYSSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAK 283
Query: 341 MAENMGISIKETS---KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI---------- 387
A G +K + K L+ + G RPH G+VL+ASPL + +
Sbjct: 284 YASLAGAQVKHVTGPWKTTLDKMTGKRPHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLA 343
Query: 388 ---SADEDQAS-----------------------LWVALDEVTDPQNLGAIIRSAYFFGA 421
+ E+QA+ + LD + DP NLGAI RSAY+FGA
Sbjct: 344 QLAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGA 403
Query: 422 SGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVS---- 477
+ ++NSAP+S VV KA++G+ E + + ++ F+ +S NGW+
Sbjct: 404 DAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATL 463
Query: 478 ----SKAVP-LNEIPP------GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
++ +P +N + P +L+LG EG+GL+ ++ V IPG ++
Sbjct: 464 VNDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIR 523
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ-VSNNSHIEDS 581
DD V SLNVSVA+ +L + + +S + +DS
Sbjct: 524 ----DDT---------------AGVSSLNVSVASALLCEAFLSRRPLSGSVETQDS 560
>gi|50083619|ref|YP_045129.1| tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
gi|52783290|sp|Q6FF50.1|RLMB_ACIAD RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA (guanosine2251
2'-O)-methyltransferase; AltName: Full=23S rRNA Gm2251
2'-O-methyltransferase
gi|49529595|emb|CAG67307.1| putative tRNA/rRNA methyltransferase [Acinetobacter sp. ADP1]
Length = 248
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 134/268 (50%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+LD + + DQA L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVLNEKDLDQLLQNNDQA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G + V++ SA L+ K ++G E ++ N+ + L + + +V+G +
Sbjct: 121 MGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+ + +V+G+E TGLRP+ + C V IP G
Sbjct: 181 EKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIP----------------MSG 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVAAG+ L+
Sbjct: 225 N------------LQSLNVSVAAGMALY 240
>gi|238504252|ref|XP_002383357.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
gi|220690828|gb|EED47177.1| RNA methyltransferase, TrmH family [Aspergillus flavus NRRL3357]
gi|391870046|gb|EIT79234.1| RNA Methylase, SpoU family [Aspergillus oryzae 3.042]
Length = 495
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 99/347 (28%), Positives = 146/347 (42%), Gaps = 98/347 (28%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEG--------------LSLSSN 325
+A P T P E +YG V AAL R Y LYV + L+LS N
Sbjct: 166 DAIPYTTP--ASEFIYGTSAVEAALRCSRRRMYKLYVYQASGEELSSAKVALRKLALSKN 223
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+ K G++++L + + RPH G VL+ASPL + ++ L
Sbjct: 224 VKVKMAFGGWDRLL------------------DKMSAGRPHNGCVLEASPLPRLPVRGLK 265
Query: 386 PISA------------------------DEDQASLW---------VALDEVTDPQNLGAI 412
+ + D+ + W + LD + DP NLGAI
Sbjct: 266 SVPSIKEEDFGVELGAQSREEALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAI 325
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSAY+ G ++ +NSAPLS V KAS+G+ E M L +N + F+ S NGW+
Sbjct: 326 IRSAYYLGVDAIIFAGRNSAPLSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKFY 385
Query: 473 GGSV---SSKAVPLNEIPPGQ------------PTILVLGSEGTGLRPLVERSCTHLVRI 517
+SK V I G+ P ++++GSEG+GL ++ +V I
Sbjct: 386 AADAPGPASKYVDTASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSI 445
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
PG V++D + V+SLNVSVAA +L+
Sbjct: 446 PG-----ARLATPLGVESDPSR-----------VDSLNVSVAAALLM 476
>gi|86742921|ref|YP_483321.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
gi|86569783|gb|ABD13592.1| RNA methyltransferase TrmH, group 3 [Frankia sp. CcI3]
Length = 363
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 82/229 (35%), Positives = 116/229 (50%), Gaps = 31/229 (13%)
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
++A GI++ + + DL+ + G PHQGL L P +L A L VA
Sbjct: 158 RLAGRAGIAVADVGRTDLDRMCGTAPHQGLALVVPPFRYAHPDDLL-ARARSSPPGLLVA 216
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQ 459
LD VTDP+NLGA++RSA FGA GVV+ + +A ++ K S+G+ + + N+ +
Sbjct: 217 LDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARATNLAR 276
Query: 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIP 518
LVS A G V+G + S+ V ++E+ P +LV+GSEG GL LVE+ C VRIP
Sbjct: 277 TLVSYAAGGQFVVGLAADSE-VSIDELTMATDPLVLVIGSEGRGLSRLVEQRCDVRVRIP 335
Query: 519 GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AG AVESLN VAAG+ L +
Sbjct: 336 -------MAG---------------------AVESLNAGVAAGITLAEI 356
>gi|403743601|ref|ZP_10953153.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
hesperidum URH17-3-68]
gi|403122631|gb|EJY56836.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
hesperidum URH17-3-68]
Length = 228
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 34/237 (14%)
Query: 333 KGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA-DE 391
+G + V+ A G+ ++ + L+++ G+ HQG+V +P V +LD + A +
Sbjct: 21 EGLQHVVARAREQGVLVQFVPRSRLDVIAGDH-HQGVVAFVAPYAYV---DLDTVVARNT 76
Query: 392 DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL 451
A L V +D VTDP NLGAI R+A G+ G+V+ ++PL+ V+KA++G+LE + +
Sbjct: 77 GHAPLVVVIDGVTDPHNLGAIARTAEAAGSQGIVISKHRASPLTETVAKAAAGALEYLPV 136
Query: 452 RYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSC 511
N++Q L E G+ V+G V +K L + PT++V+GSEG G+ LV +C
Sbjct: 137 ARVANLVQALKELKERGYWVVGTDVEAKT-SLTSVDYSGPTVVVIGSEGEGMHRLVRETC 195
Query: 512 THLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
LV IP V+SLN SVAAGV+L+ +V
Sbjct: 196 DFLVSIP----------------------------ILGQVQSLNASVAAGVMLYEVV 224
>gi|299771793|ref|YP_003733819.1| SpoU rRNA methylase family protein [Acinetobacter oleivorans DR1]
gi|298701881|gb|ADI92446.1| SpoU rRNA Methylase family protein [Acinetobacter oleivorans DR1]
Length = 249
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 131/268 (48%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKQEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ ++LD I + A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVLNEQDLDQILRETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+PL + ++V+G+E TGLRP+ + C H V IP + G
Sbjct: 181 ESALPLQKCDFSGAVVIVMGAEDTGLRPITQAQCDHKVYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|151945292|gb|EDN63535.1| mitochondrial rRNA methyltransferase [Saccharomyces cerevisiae
YJM789]
gi|207341047|gb|EDZ69213.1| YOR201Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256269588|gb|EEU04870.1| Mrm1p [Saccharomyces cerevisiae JAY291]
gi|323331535|gb|EGA72950.1| Mrm1p [Saccharomyces cerevisiae AWRI796]
gi|323352137|gb|EGA84674.1| Mrm1p [Saccharomyces cerevisiae VL3]
gi|365762881|gb|EHN04413.1| Mrm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 412
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 144/319 (45%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K+L++ + M ++
Sbjct: 122 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KILQIVDEMKVTT 168
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 169 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 228
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 229 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 288
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 289 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNE 348
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 349 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 390
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 391 IVDSLNVSVATALLIDNIL 409
>gi|326478018|gb|EGE02028.1| RNA methyltransferase [Trichophyton equinum CBS 127.97]
Length = 572
Score = 116 bits (291), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 95/356 (26%), Positives = 153/356 (42%), Gaps = 76/356 (21%)
Query: 283 PSTVP--KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P +P V E +YG V AA+ R+ + LY+ E S + K ++ + K
Sbjct: 224 PQQIPYSSPVSEFIYGTSAVNAAVRCGRRKLHTLYLFEESSRDRSGVPKWEQPEIRAIAK 283
Query: 341 MAENMGISIKETS---KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI---------- 387
A G +K + K L+ + G RPH G+VL+ASPL + +
Sbjct: 284 YASLAGAQVKHVTGPWKTTLDKMTGKRPHNGMVLEASPLPKPPVLSFQTVVSKSNSHFLA 343
Query: 388 ---SADEDQAS-----------------------LWVALDEVTDPQNLGAIIRSAYFFGA 421
+ E+QA+ + LD + DP NLGAI RSAY+FGA
Sbjct: 344 QLAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGNLGAIFRSAYWFGA 403
Query: 422 SGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVS---- 477
+ ++NSAP+S VV KA++G+ E + + ++ F+ +S NGW+
Sbjct: 404 DAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANGWKFFAADAPDATL 463
Query: 478 ----SKAVP-LNEIPP------GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
++ +P +N + P +L+LG EG+GL+ ++ V IPG ++
Sbjct: 464 VNDYTRKIPVMNSLDALSSELTKAPCVLMLGGEGSGLQQKIKNRADSFVTIPGAYSANIR 523
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ-VSNNSHIEDS 581
DD V SLNVSVA+ +L + + +S + +DS
Sbjct: 524 ----DDT---------------AGVSSLNVSVASALLCEAFLSRRPLSGSVETQDS 560
>gi|392946075|ref|ZP_10311717.1| rRNA methylase, putative, group 3, partial [Frankia sp. QA3]
gi|392289369|gb|EIV95393.1| rRNA methylase, putative, group 3, partial [Frankia sp. QA3]
Length = 313
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 76/207 (36%), Positives = 113/207 (54%), Gaps = 14/207 (6%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYV GL + + D + ++A GI++ + ++ DL+ + G PHQGL L
Sbjct: 91 LYVAGGLDF---DERLVDAR------RLAARAGIAVVDVARPDLDRMCGTAPHQGLALSV 141
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P +L A L VALD VTDP+NLGA++RSA FGA GVV+ + +A
Sbjct: 142 PPFRYAHPDDLI-ARARAAAPGLLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAG 200
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVP-LNEIPPG-QP 491
++ K S+G+ + + N+ + LVS AE+G V+G +++ A P ++E+ P
Sbjct: 201 MTAAAWKTSAGAAARLPVARATNLARTLVSYAESGLFVVG--LAADAGPTIDELEMATDP 258
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIP 518
+LV+GSEG GL LVE C VRIP
Sbjct: 259 VVLVIGSEGRGLSRLVEERCDVTVRIP 285
>gi|294656094|ref|XP_458335.2| mitochondrial rRNA methyltransferase [Debaryomyces hansenii CBS767]
gi|199430853|emb|CAG86415.2| DEHA2C14982p [Debaryomyces hansenii CBS767]
Length = 426
Score = 116 bits (290), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 109/402 (27%), Positives = 176/402 (43%), Gaps = 102/402 (25%)
Query: 222 YAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKP-EYQRWNRQENSGRTTWKE 280
Y K G+ E+ E N++ + RR K R + +Y++ ++E R
Sbjct: 63 YMKKYGSISEKEREF-------LNQKVDRQRRARKERKDADRQYRKHEKEERFSRFGGNR 115
Query: 281 AAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
+ E +YG PV+AAL A R + + SS ++ K
Sbjct: 116 DFRQAFKNPLSEYVYGTFPVMAALMANKRGSFNKLITHNPKESSG-----------EIFK 164
Query: 341 MAENMGISI-KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDP--------IS 388
+A+ G+ I ++ SK+DLN++ N H G+VL+ PLE+ I E DP I
Sbjct: 165 LAKRYGLRIDRKDSKNDLNVLSDNGVHNGIVLETKPLELPIISTLGECDPELGTYKVSIV 224
Query: 389 AD----------------EDQAS----LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
D D++S L + LD +TDPQN+GAI+RSAY+ GA +V+
Sbjct: 225 NDLYNTEVQKSEPVVRNFSDESSSKYPLGIYLDGITDPQNIGAIVRSAYYLGADFIVVPD 284
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS------------- 475
+A L V +KAS+GSL+L + + ++F+ S NGW V+ S
Sbjct: 285 HETARLGPVANKASAGSLDLTSIYQTVDSLRFVESVKNNGWNVITTSAKPNHDELHDLKS 344
Query: 476 --------VSSKAVPLNEIP---PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN--IP 522
+ +K + ++E+ P +L++GSEG G+R ++ +LV + +
Sbjct: 345 KHEKVEEHLKNKFIEVDELSSMMAQSPILLIMGSEGAGVRTNLKLKSDYLVGLDKGRRLG 404
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VD+ V+SLNVSVA G+L+
Sbjct: 405 VDI-------------------------VDSLNVSVACGLLI 421
>gi|323335423|gb|EGA76709.1| Mrm1p [Saccharomyces cerevisiae Vin13]
gi|323346586|gb|EGA80873.1| Mrm1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 412
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 143/319 (44%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K+L++ + M ++
Sbjct: 122 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KILQIVDEMKVTT 168
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 169 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 228
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 229 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 288
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L S K LN +
Sbjct: 289 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANXTSEKYTVGKTISMHDLNGLCNE 348
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 349 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 390
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 391 IVDSLNVSVATALLIDNIL 409
>gi|417749990|ref|ZP_12398366.1| rRNA methylase, putative, group 3 [Mycobacterium avium subsp.
paratuberculosis S397]
gi|336458473|gb|EGO37446.1| rRNA methylase, putative, group 3 [Mycobacterium avium subsp.
paratuberculosis S397]
Length = 309
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 135/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GISI E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESVSRAADS-GISILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + GN HQG+ L P +L +A A L VALD ++DP+NLGA
Sbjct: 118 VPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSPPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ P ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGDTM-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GSA ESLN SVAAGV+L +
Sbjct: 283 ------MAGSA---------ESLNASVAAGVVLAEI 303
>gi|118465233|ref|YP_879854.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
avium 104]
gi|254773532|ref|ZP_05215048.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
avium subsp. avium ATCC 25291]
gi|254806514|sp|A0QAB6.1|Y574_MYCA1 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAV_0574
gi|118166520|gb|ABK67417.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
avium 104]
Length = 309
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 134/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GISI E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESVSRAADS-GISILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + GN HQG+ L P +L +A A L VALD ++DP+NLGA
Sbjct: 118 VPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSPPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGDTT-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GSA ESLN SVAAGV+L +
Sbjct: 283 ------MAGSA---------ESLNASVAAGVVLAEI 303
>gi|404496216|ref|YP_006720322.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
metallireducens GS-15]
gi|78193823|gb|ABB31590.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
metallireducens GS-15]
Length = 250
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 84/282 (29%), Positives = 137/282 (48%), Gaps = 40/282 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + AL K R F L+V +R D++ EK+LK+A G+ ++
Sbjct: 4 EILYGINSAMEALRGKRRAF-ELFV---------SRDASDRR-MEKLLKLATEKGVPVRN 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K D++ + G HQG+ L + ++ + + L +ALD V DP NLGA
Sbjct: 53 RDKRDISRLCGTDHHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA GA GV++ +A ++ V K+++G+ E + + N+ Q L E G+ +
Sbjct: 113 LIRSAACAGAHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWI 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G + S+ + ++ G ++V+GSEG G+RPLV + C LV IP + G
Sbjct: 173 YGAADSAASSLYDQDLSGN-VVIVIGSEGEGVRPLVRKKCDFLVAIP------LRGG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V SLN SVA GV+L ++ +++
Sbjct: 223 -------------------VSSLNASVAGGVILFEVLRQRLA 245
>gi|225682465|gb|EEH20749.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb03]
Length = 565
Score = 116 bits (290), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 162/378 (42%), Gaps = 92/378 (24%)
Query: 282 APSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQE---GLSLSSNNRKKKDKKGYE 336
AP ++P E +YG VLAAL R+ Y LY+ E +SL R + +
Sbjct: 194 APKSIPYTTAASEFIYGASAVLAALRCGRRKLYKLYIYETPDNVSLRLG-RNPTREPMLD 252
Query: 337 KVLKMAENMGISIKETSKH---DLNMVVGNRPHQGLVLDASPLEMVKIKELDPI------ 387
++K G+ +K+ + + L+ + G RPH G +L+AS L + + L P+
Sbjct: 253 TIIKFGLAAGVCVKQVAGNWPKLLDKMSGGRPHNGCILEASQLPKLPVDSLLPVLSPSET 312
Query: 388 -------------------------SADEDQAS-------------LWVALDEVTDPQNL 409
+A D+ S + LD + DP N+
Sbjct: 313 HFNASVCHQSSEEAEVNGTSGRIPRAAYRDENSPLAENLIMPTRYPFALFLDGIRDPGNV 372
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAIIRSAY+FG V++ ++SAP+S V KAS+G+ E + + N F+ SS NGW
Sbjct: 373 GAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNPTLFVKSSHTNGW 432
Query: 470 RVLG--------------GSVSSKAVPLNEIPPG---QPTILVLGSEGTGLRPLVERSCT 512
+ G+ + + + E+ P +L+LGSE GL + +
Sbjct: 433 KFFAAEAPAAANASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGSEEQGLPRSIRQQAD 492
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
V IPG I TA ++D V+SLNVSVA+ +L +G
Sbjct: 493 GAVVIPGAI----TASNVEDR---------------AGVDSLNVSVASALLCEAFLGDPS 533
Query: 573 SN---NSHIEDSSTATVD 587
SN ++ E+ +TVD
Sbjct: 534 SNTQDSTPAEEGLISTVD 551
>gi|296166634|ref|ZP_06849061.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
gi|295898006|gb|EFG77585.1| RNA methyltransferase [Mycobacterium parascrofulaceum ATCC BAA-614]
Length = 310
Score = 115 bits (289), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 96/316 (30%), Positives = 143/316 (45%), Gaps = 40/316 (12%)
Query: 252 RRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREF 311
RR ++ R P + R P+ P E + G PVL L A
Sbjct: 29 RRALEGRGPTPPAHLRPNHPAAKRAQSPPRRPAKRPTDETETVLGRNPVLECLRAGV-PA 87
Query: 312 YALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
ALYV G D++ E V + A++ GISI E + DL+ + N HQG+ L
Sbjct: 88 TALYVALG--------TDTDERVTESVARAADS-GISILEVPRADLDRMTSNHLHQGIAL 138
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
P +L +A L VALD ++DP+NLGAI+RS FG GV++ + S
Sbjct: 139 QVPPYSYAHPDDLL-ATALGSPPPLLVALDNISDPRNLGAIVRSVAAFGGHGVLIPQRRS 197
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ V + S+G+ + + N+ + L A+ G RV+G V ++++ P
Sbjct: 198 ASVTAVAWRTSAGAAARIPVARATNLTRTLKDWADRGIRVIGLDAGGDTV-VDDLDGADP 256
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++V+GSEG GL LV ++C +V IP AG+
Sbjct: 257 LVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAGQ---------------------A 288
Query: 552 ESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 289 ESLNASVAAGVVLAEI 304
>gi|258655031|ref|YP_003204187.1| TrmH family RNA methyltransferase [Nakamurella multipartita DSM
44233]
gi|258558256|gb|ACV81198.1| RNA methyltransferase, TrmH family, group 3 [Nakamurella
multipartita DSM 44233]
Length = 326
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 139/290 (47%), Gaps = 47/290 (16%)
Query: 283 PSTVPKM-VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKM 341
P+T P+ + E + G PV+ AL A ALYV GL+ D++ E +
Sbjct: 67 PTTRPRGELPETVVGRNPVVEALRAGV-PATALYVAGGLA--------TDERIAEAITGA 117
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
AE GI + S+ +L+ + GN HQG+ L P + ++L + D +A+L VA+D
Sbjct: 118 AER-GIPQLDVSRPELDRLTGNAIHQGVALVVPPYQYAHPEDLLSRARDSGRAALIVAVD 176
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
VTDP+NLGAI+RSA FGA GVV+ + SA ++ + S+G+ + + C N+++ L
Sbjct: 177 GVTDPRNLGAIVRSAAAFGAHGVVVPERRSAGMTASAWRTSAGTAARLRVARCTNLVRTL 236
Query: 462 VSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
A G + G G+ + + L P +LV+GSEG GL L C V I
Sbjct: 237 KDYAAQGLMIAGLDADGTTDTDSFELAT----SPLVLVVGSEGRGLARLTRTVCDVTVSI 292
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
P +VESLN SVAAGV+L +
Sbjct: 293 P----------------------------MARSVESLNASVAAGVVLAEV 314
>gi|403050358|ref|ZP_10904842.1| tRNA/rRNA methyltransferase [Acinetobacter bereziniae LMG 1003]
Length = 250
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 133/269 (49%), Gaps = 38/269 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK+ +Y ++ E L L+ K +D + +++L++AE GIS+++ S+ L
Sbjct: 2 AKSEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQRILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+LD + D + L +ALD +TDP NLGA IR+A
Sbjct: 62 KLAGQPFHQGVVAAVRPNPVLNEKDLDQLLESTD-SPLLLALDHITDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN-GWRVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E+ RV+G +
Sbjct: 121 MGVEAVIVPRDRSATLTPTARKVAAGGAEKVKFIQVTNLARTLGHIKEHYHVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+P+++ G P +V+G+E TGLRP+ + C V IP
Sbjct: 181 EKALPIHKFDFTGTPVCVVMGAEDTGLRPITQSQCDQTVFIP----------------MS 224
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
GN ++SLNVSVA G+ L+
Sbjct: 225 GN------------LQSLNVSVATGMALY 241
>gi|16331014|ref|NP_441742.1| hypothetical protein slr0955 [Synechocystis sp. PCC 6803]
gi|383322757|ref|YP_005383610.1| hypothetical protein SYNGTI_1848 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325926|ref|YP_005386779.1| hypothetical protein SYNPCCP_1847 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491810|ref|YP_005409486.1| hypothetical protein SYNPCCN_1847 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384437077|ref|YP_005651801.1| hypothetical protein SYNGTS_1848 [Synechocystis sp. PCC 6803]
gi|451815172|ref|YP_007451624.1| hypothetical protein MYO_118650 [Synechocystis sp. PCC 6803]
gi|3915411|sp|P74328.1|Y955_SYNY3 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase slr0955
gi|1653509|dbj|BAA18422.1| slr0955 [Synechocystis sp. PCC 6803]
gi|339274109|dbj|BAK50596.1| hypothetical protein SYNGTS_1848 [Synechocystis sp. PCC 6803]
gi|359272076|dbj|BAL29595.1| hypothetical protein SYNGTI_1848 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359275246|dbj|BAL32764.1| hypothetical protein SYNPCCN_1847 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359278416|dbj|BAL35933.1| hypothetical protein SYNPCCP_1847 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407961619|dbj|BAM54859.1| hypothetical protein BEST7613_5928 [Bacillus subtilis BEST7613]
gi|451781141|gb|AGF52110.1| hypothetical protein MYO_118650 [Synechocystis sp. PCC 6803]
Length = 384
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 18/266 (6%)
Query: 260 EKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEG-------LYGVGPVLAALSAKTREFY 312
+KP Y + + + + + P+ P M E LYG VLAAL R+
Sbjct: 85 DKPRYGDDRPRRSGQKPPFGKTFPAAPPPMDSEQAQEALDLLYGHHAVLAALDGD-RQLN 143
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
+++ L R K ++ A+ G + E LN + N HQG+
Sbjct: 144 RIWITSHLRHDIRYRTK---------IQTAKANGTVVDEVDNFRLNQITHNANHQGIAAQ 194
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+P ++ +L + + A + + +D +TDP NLGAIIR+A FGA G+VL + A
Sbjct: 195 VAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVA 254
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ V K ++G+LE + N+ + L + E+G+ + G+V+ K L++ +P
Sbjct: 255 GITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIY-GTVAGKQTALHQADLREPM 313
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIP 518
LV+GSEG GL L ++ C HL+ IP
Sbjct: 314 GLVIGSEGEGLSLLTQKHCDHLITIP 339
>gi|391334842|ref|XP_003741809.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like
[Metaseiulus occidentalis]
Length = 313
Score = 115 bits (289), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 84/277 (30%), Positives = 135/277 (48%), Gaps = 40/277 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ PV AL+ K R+FY L+++ L N++ E + + AEN+ I I+
Sbjct: 67 LFGIHPVELALAEKRRKFYKLFLKPNRGLYRNDK-------LESIHEWAENLRIPIRFKC 119
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKI-KELDPISADEDQASLWVALDEVTDPQNLGAI 412
+L+ + + HQG+VL AS L+ + +++ +D L V +D + DP N+GA+
Sbjct: 120 VQELSSLTRDAVHQGVVLQASRLKHKEWSDQMEIFGKSDDSGRLLVYMDRIMDPMNMGAV 179
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IR+ F G +++ S LS VSKASSG+LE + + ++F+ + W ++
Sbjct: 180 IRTCVFLGVDAILVPKMESCALSTTVSKASSGALECATICTVESPLEFMTFVKKLNWDIV 239
Query: 473 GGSVSSKAVPLN--EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
G S P N E+ P + +L+LG+EG G+ + T V +PG VT
Sbjct: 240 GS--DSDCQPYNEFEVTP-RNRLLILGNEGHGVNQDLVEFFTETVSVPG-----VTN--- 288
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V SLNVSV +G+LL H
Sbjct: 289 -------------------RVGSLNVSVTSGILLSHF 306
>gi|262374017|ref|ZP_06067294.1| rRNA methylase [Acinetobacter junii SH205]
gi|262311028|gb|EEY92115.1| rRNA methylase [Acinetobacter junii SH205]
Length = 249
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L +AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILALAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGMPFHQGVVAAVRPHPTLNEKDLDQLMQQHPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHTRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+ + ++V+G+E TGLRP+ + C V IP AG++
Sbjct: 181 EKALPIQQCDFSGSVVIVMGAEDTGLRPITQSQCDQTVFIP-------MAGDL------- 226
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 --------------QSLNVSVATGMALY 240
>gi|226289866|gb|EEH45350.1| RNA methyltransferase [Paracoccidioides brasiliensis Pb18]
Length = 565
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/378 (27%), Positives = 162/378 (42%), Gaps = 92/378 (24%)
Query: 282 APSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQE---GLSLSSNNRKKKDKKGYE 336
AP ++P E +YG VLAAL R+ Y LY+ E +SL R + +
Sbjct: 194 APKSIPYTTAASEFIYGASAVLAALRCGRRKLYKLYIYETPDNVSLRLG-RNPTREPMLD 252
Query: 337 KVLKMAENMGISIKETSKH---DLNMVVGNRPHQGLVLDASPLEMVKIKELDPI------ 387
++K G+ +K+ + + L+ + G RPH G +L+AS L + + L P+
Sbjct: 253 TIIKFGLAAGVCVKQVAGNWPKLLDKMSGGRPHNGCILEASQLPKLPVDSLLPVLSPSET 312
Query: 388 -------------------------SADEDQAS-------------LWVALDEVTDPQNL 409
+A D+ S + LD + DP N+
Sbjct: 313 HFNASVCHQSSEEAEVNGTSGRIPRAAYRDENSPLAENLIMPTRYPFALFLDGIRDPGNV 372
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAIIRSAY+FG V++ ++SAP+S V KAS+G+ E + + N F+ SS NGW
Sbjct: 373 GAIIRSAYYFGVDAVIVSTRSSAPISAVAIKASAGAAENIPILTTTNPTLFVKSSHTNGW 432
Query: 470 RVLG--------------GSVSSKAVPLNEIPPG---QPTILVLGSEGTGLRPLVERSCT 512
+ G+ + + + E+ P +L+LGSE GL + +
Sbjct: 433 KFFAAEAPAAANASQQTLGTPTEQVLSRREVSTKLNEAPCVLMLGSEEQGLPRSIRQQAD 492
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
V IPG I TA ++D V+SLNVSVA+ +L +G
Sbjct: 493 GAVVIPGAI----TASNVEDR---------------AGVDSLNVSVASALLCEAFLGDPS 533
Query: 573 SN---NSHIEDSSTATVD 587
SN ++ E+ +TVD
Sbjct: 534 SNTQDSTPAEEGLISTVD 551
>gi|449282067|gb|EMC88976.1| rRNA methyltransferase 1, mitochondrial, partial [Columba livia]
Length = 197
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/219 (34%), Positives = 114/219 (52%), Gaps = 38/219 (17%)
Query: 366 HQGLVLDASPLEMVKIKELD-PISADEDQAS---LWVALDEVTDPQNLGAIIRSAYFFGA 421
HQG+ L+A+PL ++E + P DE++ +W+ L+++ DP NLGA++RSAYF G
Sbjct: 1 HQGVCLEATPLRFKSLEEAEKPEVGDEERPKPRLVWLVLEQIQDPMNLGALLRSAYFLGV 60
Query: 422 SGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV 481
VV +NS PL+ VSKASSG +E+ ++ +++ FL + + GW V+G SK
Sbjct: 61 DRVVTSQRNSCPLTPTVSKASSGVMEVFDVYSTDDLRSFLKAKSAEGWEVVG--TVSKPE 118
Query: 482 PLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ +P +P ILV+GSEG GL + C ++ IP
Sbjct: 119 DVENVPVISCLEFQWNKPVILVIGSEGDGLSLETQLLCHRMLTIPP-------------- 164
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
G A +ESLNVSVA G+LLH + ++
Sbjct: 165 ------GRALH----PGIESLNVSVATGILLHSICSQKL 193
>gi|225022148|ref|ZP_03711340.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
ATCC 33806]
gi|305680558|ref|ZP_07403366.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
matruchotii ATCC 14266]
gi|224945081|gb|EEG26290.1| hypothetical protein CORMATOL_02181 [Corynebacterium matruchotii
ATCC 33806]
gi|305660089|gb|EFM49588.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
matruchotii ATCC 14266]
Length = 320
Score = 115 bits (288), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALY+ +G + D + E V ++A + I + E
Sbjct: 70 ELVVGRNPVIECLHARV-PATALYIAQG--------TRNDDRLTEAV-QLAHSRSIPLIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ + GN HQG+ L P E + +L AD + + V LD +TDP+NLGA
Sbjct: 120 VPRIELDSMTGNGLHQGVGLQIPPFEYADVFDLIGTVADSKEQGMIVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L +NG++V
Sbjct: 180 VIRSTAAFGGQGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRTLKEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + P ++V+GSEG GL LV +C LV +P
Sbjct: 240 VGLDAGGDTT-YDSYDGTGPVVIVVGSEGKGLSRLVRETCDVLVSVP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ VESLN SVAAGV+L
Sbjct: 286 ---------------TTSWVESLNASVAAGVVL 303
>gi|190407514|gb|EDV10781.1| ribose methyltransferase for mitochondrial 21S rRNA [Saccharomyces
cerevisiae RM11-1a]
Length = 385
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 144/319 (45%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K+L++ + M ++
Sbjct: 95 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KILQIVDEMKVTT 141
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 142 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 201
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 202 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 261
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 262 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNE 321
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 322 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 363
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 364 IVDSLNVSVATALLIGNIL 382
>gi|54022403|ref|YP_116645.1| tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
gi|54013911|dbj|BAD55281.1| putative tRNA/rRNA methyltransferase [Nocardia farcinica IFM 10152]
Length = 324
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G + D++ E V K+A + GISI E
Sbjct: 82 ELVLGRNPVVECLRAGV-PATALYVAVG--------TENDERLTESV-KLAADTGISILE 131
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P +L + + +L VALD ++DP+NLGA
Sbjct: 132 VPRTDLDRMSSNGLHQGLALQVPPYRYAHPDDLAERARSSAEPALLVALDNISDPRNLGA 191
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L A G ++
Sbjct: 192 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWANQGMQI 251
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E PT++V+GSEG GL LV +C ++ IP P
Sbjct: 252 VGLDAGGD-TSLDEFDGTDPTVIVVGSEGKGLSRLVRETCDSVLSIPMAGP--------- 301
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 302 -------------------VESLNASVAAGVVLSEI 318
>gi|260803601|ref|XP_002596678.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
gi|229281937|gb|EEN52690.1| hypothetical protein BRAFLDRAFT_122033 [Branchiostoma floridae]
Length = 471
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 116/218 (53%), Gaps = 14/218 (6%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P + E L+G+ P L AL R F L++++ + +R E++ +A+
Sbjct: 250 PAVGNEFLFGIAPCLLALQQGQRSFSQLFLKDAPYQTGADR-------IEEIESLADEKE 302
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASP--LEMVKIKELDP-ISADEDQASLWVALDEV 403
+ + KH + ++G+ HQG+ L+A+ E + ++++ P + D ++ +W+ L+EV
Sbjct: 303 VKVVRIPKHRMTKMIGDGTHQGVCLEATKRRAEPLSLEDISPTVDVDSERPPIWLVLNEV 362
Query: 404 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
DP N GAI+RS+Y+ G ++ + N PL+ VVSKASSG++E + ++ L +
Sbjct: 363 QDPMNFGAILRSSYYLGVDKIIASSSNCCPLTPVVSKASSGAMETQTVYSMEDIPALLQN 422
Query: 464 SAENGWRVLGGSVSSK----AVPLNEIPPGQPTILVLG 497
+ +GW V+G +++ V PT+LVLG
Sbjct: 423 LSSSGWTVVGTVAATEDVEGTVVCGNFALSGPTVLVLG 460
>gi|41406577|ref|NP_959413.1| hypothetical protein MAP0479 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|440775869|ref|ZP_20954725.1| hypothetical protein D522_02877 [Mycobacterium avium subsp.
paratuberculosis S5]
gi|81414895|sp|Q743W2.1|Y479_MYCPA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAP_0479
gi|41394926|gb|AAS02796.1| hypothetical protein MAP_0479 [Mycobacterium avium subsp.
paratuberculosis K-10]
gi|436724090|gb|ELP47846.1| hypothetical protein D522_02877 [Mycobacterium avium subsp.
paratuberculosis S5]
Length = 309
Score = 115 bits (288), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 135/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GISI E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESVSRAADS-GISILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + GN HQG+ L P +L +A A L VALD ++DP+NLGA
Sbjct: 118 VPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ P ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGDTM-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GSA ESLN SVAAGV+L +
Sbjct: 283 ------MAGSA---------ESLNASVAAGVVLAEI 303
>gi|225559060|gb|EEH07343.1| RNA methyltransferase [Ajellomyces capsulatus G186AR]
Length = 462
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 117/446 (26%), Positives = 183/446 (41%), Gaps = 121/446 (27%)
Query: 239 VSDSK-WNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWK--------EAAPSTVPKM 289
+ DS+ W++R + R D+ + + + R+ N+ R + E +P T P++
Sbjct: 27 IGDSQTWDRRDSQRRNDMASNKSSLSFPKNRRERNAERLAERSEQTEYTLERSPHTQPQV 86
Query: 290 -------------VGEGLYGVGPVLAALSAKTREFYALYVQ---EGLSLSSNNRKKKDKK 333
E +YG VLAAL R+ Y LY+ + +SL +D
Sbjct: 87 SITAPRSIPYTTAASEFVYGSSAVLAALRCGRRKLYKLYIHNAPDKVSLRLGRHSPRDPM 146
Query: 334 GYEKVLKMAENMGISIKETSKH---DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA- 389
+ ++K G+S+K+ + + L + G RPH G +L+AS L + + L + +
Sbjct: 147 -LDTIIKFGLAAGVSVKQVAGNWPKLLEKMSGGRPHNGCILEASQLPKLPVNGLLAVESP 205
Query: 390 --------------------------------DEDQAS------------LWVALDEVTD 405
D D +S + LD + D
Sbjct: 206 LDNHFNVSVCQQSVEEADVNGTSGRIPRSTYRDGDSSSTGNDIKLAPRYPFALLLDGIRD 265
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
N+GAIIRSAY+FG ++L +NSAP+S V KAS+G+ E + + N FL ++
Sbjct: 266 EGNVGAIIRSAYYFGVDAIILSTRNSAPISAVAVKASAGAAENIPILTTTNPTLFLKNTH 325
Query: 466 ENGWRVLGG-------------SVSSKAV--------PLNEIPPGQPTILVLGSEGTGLR 504
NGW+ S S++ + LNE P IL+LGSE GL+
Sbjct: 326 MNGWKFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNE----SPCILMLGSEDQGLQ 381
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
V + +V IPG I + GE D V+SLNVSVA+ +L
Sbjct: 382 KSVRQQADGVVVIPGAI---TSTGEEDRA----------------GVDSLNVSVASALLC 422
Query: 565 HHLVGHQVSNN---SHIEDSSTATVD 587
+G S S E+ +TVD
Sbjct: 423 EAFLGDPSSTGPGLSSSEEGMMSTVD 448
>gi|375291580|ref|YP_005126120.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
241]
gi|375293775|ref|YP_005128315.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
INCA 402]
gi|376243521|ref|YP_005134373.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
CDCE 8392]
gi|376246418|ref|YP_005136657.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC01]
gi|376249204|ref|YP_005141148.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC04]
gi|376251995|ref|YP_005138876.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC03]
gi|376255013|ref|YP_005143472.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
PW8]
gi|376257813|ref|YP_005145704.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
VA01]
gi|376288442|ref|YP_005161008.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
BH8]
gi|376291117|ref|YP_005163364.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae C7
(beta)]
gi|376293958|ref|YP_005165632.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC02]
gi|419861499|ref|ZP_14384131.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
gi|371581251|gb|AEX44918.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
241]
gi|371583447|gb|AEX47113.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
INCA 402]
gi|371585776|gb|AEX49441.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
BH8]
gi|372104513|gb|AEX68110.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae C7
(beta)]
gi|372106763|gb|AEX72825.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
CDCE 8392]
gi|372109048|gb|AEX75109.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC01]
gi|372111281|gb|AEX77341.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC02]
gi|372113499|gb|AEX79558.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC03]
gi|372115772|gb|AEX81830.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
HC04]
gi|372118097|gb|AEX70567.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
PW8]
gi|372120330|gb|AEX84064.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
VA01]
gi|387981970|gb|EIK55491.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae bv.
intermedius str. NCTC 5011]
Length = 313
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 133/275 (48%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V ++A + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIVEG--------TKNDNRLSEAV-QIAHSRGIPMIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+H+++++ GN HQG+ L P + + +L + + V LD +TDP+NLGA
Sbjct: 120 VPRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTGEDGMVVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + + +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C L+ IP
Sbjct: 240 VGLDAGGDAT-LDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MAGWVESLNASVAAGVVL 303
>gi|198435468|ref|XP_002131824.1| PREDICTED: similar to mitochondrial rRNA methyltransferase 1
homolog [Ciona intestinalis]
Length = 326
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 91/347 (26%), Positives = 161/347 (46%), Gaps = 58/347 (16%)
Query: 233 GEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGE 292
G++ + + SK KR+ + + KAR +QR+++ E S E
Sbjct: 23 GKDSKPIKISK-QKRKTNLNHNTKAR-----HQRFDKIETSD--------------FGNE 62
Query: 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
LYG AL + R + +++ + ++ + + LK AE I I+
Sbjct: 63 FLYGRSVCNLALLSSRRPIFKMFINSKWEV-----QEPEDPRVQTSLKEAEERNIPIEFV 117
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA----DEDQASLWVALDEVTDPQN 408
S DL + PHQG+ L+ L ++ + + D I++ +Q +WV L ++ DP N
Sbjct: 118 SVSDLFEITQGFPHQGICLEVGQLPVIPLTQ-DTITSLIHHKLEQCPVWVLLYDIIDPMN 176
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
+G I+R+ +F G V++ APLS KASSG+ E+M++ QF+ +E
Sbjct: 177 VGNILRTCHFLGVHAVIM-TPQCAPLSSSACKASSGATEIMQIYSVRKPTQFIQDMSEKN 235
Query: 469 WRVLGGSV----SSKAVPLNEI---PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNI 521
W +LG + ++ P+ ++ +P++L+LGSEG+G+ V+ CT L+ I
Sbjct: 236 WEILGTDIFREDNNTHCPVLDVVEHKVTKPSLLILGSEGSGIPSDVKEICTKLLTIK--- 292
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
P+ + E Q ++V LNVS A ++LH ++
Sbjct: 293 PLKT---------------NTENPQ--LSVPCLNVSAATAIILHQIL 322
>gi|400535281|ref|ZP_10798818.1| tRNA/rRNA methyltransferase [Mycobacterium colombiense CECT 3035]
gi|400331639|gb|EJO89135.1| tRNA/rRNA methyltransferase [Mycobacterium colombiense CECT 3035]
Length = 310
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GISI E
Sbjct: 69 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESVTRAADS-GISILE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + GN HQG+ L P E +L +A +L VALD ++DP+NLGA
Sbjct: 119 VPRTDLDRMTGNHLHQGIALQVPPYEYAHPDDL-VAAALSAPPALLVALDNISDPRNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A G RV
Sbjct: 178 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLNRTLTDWAARGLRV 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L++I P ++V+GSEG GL LV ++C +V IP AG
Sbjct: 238 IGLDADGDTT-LDDIDGTDPLVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAGN-- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 288 -------------------TESLNASVAAGVVLAEI 304
>gi|300780462|ref|ZP_07090318.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
gi|300534572|gb|EFK55631.1| RNA methyltransferase [Corynebacterium genitalium ATCC 33030]
Length = 312
Score = 115 bits (287), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/271 (30%), Positives = 128/271 (47%), Gaps = 38/271 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PV+ L AK AL + +G D + E V +MA GI + E
Sbjct: 70 VVGRNPVVECLHAKV-PSEALLIAQGTG--------HDDRLSEAV-QMANTRGIPVHEVP 119
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ DL+ + GN HQG+ L P + + +L D + ++V LD +TDP+NLGA+I
Sbjct: 120 RRDLDNMTGNTLHQGIGLKIQPYKYADVFDLIGGVRDRGETGMFVVLDNITDPRNLGAVI 179
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG GV++ + SA ++GV + S+G+ + + N+ + + +NG+ V+G
Sbjct: 180 RSAAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVARATNLTRTIKEFKDNGYMVVG 239
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 240 LDAGGEHTLDTFDGATDPVVIVVGSEGKGISRLVRENCDVIMSIP--------------- 284
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
AD VESLN SVAAGV+L
Sbjct: 285 TAD-------------WVESLNASVAAGVVL 302
>gi|118619334|ref|YP_907666.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
gi|443493132|ref|YP_007371279.1| tRNA/rRNA methyltransferase [Mycobacterium liflandii 128FXT]
gi|254803872|sp|A0PV26.1|Y4155_MYCUA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MUL_4155
gi|118571444|gb|ABL06195.1| tRNA/rRNA methyltransferase [Mycobacterium ulcerans Agy99]
gi|442585629|gb|AGC64772.1| tRNA/rRNA methyltransferase [Mycobacterium liflandii 128FXT]
Length = 310
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G+ + D++ E V + A++ GI I E
Sbjct: 69 ETVLGRNPVLECLRAGV-PSTALYVALGV--------EADERLTESVSRAADS-GIPILE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D A L VALD ++DP+NLGA
Sbjct: 119 VPRTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPA-LLVALDNISDPRNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ M + N+ + L A+ G RV
Sbjct: 178 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRV 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++++ P ++V+GSEG GL LV ++C +V +P P
Sbjct: 238 VGLDAGGDTA-IDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGP--------- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 288 -------------------TESLNASVAAGVVLAEI 304
>gi|453382722|dbj|GAC82801.1| putative RNA methyltransferase [Gordonia paraffinivorans NBRC
108238]
Length = 315
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 116/228 (50%), Gaps = 29/228 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+ +K+A + GISI E +K +L+ + N HQG+ L E +L + L
Sbjct: 107 EAVKLAADQGISILEVAKPELDRISTNGMHQGIALQVPEYEYAHPDDLMADAQASGTPPL 166
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGA+IRS FG GVV+ A+ SA ++ V + S+G+ + + N
Sbjct: 167 LVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATN 226
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + L AE G +++G V L++ PT++V+GSEG GL LV +C ++
Sbjct: 227 LNRTLKEWAETGAQLVGLDADGD-VSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILS 285
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
IP AGE VESLN SVAAGV+L
Sbjct: 286 IP-------MAGE---------------------VESLNASVAAGVVL 305
>gi|148264836|ref|YP_001231542.1| RNA methyltransferase [Geobacter uraniireducens Rf4]
gi|146398336|gb|ABQ26969.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
uraniireducens Rf4]
Length = 242
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 88/280 (31%), Positives = 131/280 (46%), Gaps = 44/280 (15%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V+ AL K R F L+V G S+ R EK+L +A G+
Sbjct: 1 MKDEIIYGLNSVMEALRGKRRAF-ELFVAPG---GSDRR-------LEKLLALAAEKGVP 49
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
+++ K D+ + G HQG+ L A P ++ ++ D L + LD V DP N
Sbjct: 50 VRQRDKRDIARLCGTEHHQGVALRAEPFAYAQLSDILVPGTD----GLLLVLDGVQDPHN 105
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA+IRSA GA GV++ + ++ V KAS+G++E + + N+ L G
Sbjct: 106 LGALIRSAACAGAQGVIIPRDRAVGVTATVEKASAGAIETIPVAEVTNVAHTLEELKNAG 165
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
+ + G S ++ G +LV+GSEG G+RPLV++ C LV IP + G
Sbjct: 166 FWIYGADGESPLSIFDQKLTGA-VVLVIGSEGEGIRPLVKKKCDFLVSIP------LRGG 218
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V SLN SVA G+LL +V
Sbjct: 219 ----------------------VNSLNASVAGGILLFEVV 236
>gi|376285431|ref|YP_005158641.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
31A]
gi|371578946|gb|AEX42614.1| SpoU rRNA methylase family protein [Corynebacterium diphtheriae
31A]
Length = 313
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 133/275 (48%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK +LY+ EG K D + E V ++A + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATSLYIVEG--------TKNDNRLSEAV-QIAHSRGIPMIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+H+++++ GN HQG+ L P + + +L + + V LD +TDP+NLGA
Sbjct: 120 VPRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTGEDGMVVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + + +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKVTNITRAVQEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C L+ IP
Sbjct: 240 VGLDAGGDAT-LDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MAGWVESLNASVAAGVVL 303
>gi|405982369|ref|ZP_11040691.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces neuii
BVS029A5]
gi|404390140|gb|EJZ85210.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces neuii
BVS029A5]
Length = 328
Score = 115 bits (287), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 115/239 (48%), Gaps = 30/239 (12%)
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
K D+ G + ++A G I + + DL+ HQG+ ++ E + +L +
Sbjct: 112 KDDRMG--QAFRVATAAGAPILQVDREDLDYATDGAVHQGVAIEVPEYEYFTLSDLFAKA 169
Query: 389 ADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
AD D+ L VALD VTDP NLGA++RS FGASGV++ +NSA ++ V K S+G+L
Sbjct: 170 ADSDKPGLIVALDHVTDPHNLGAVLRSGGAFGASGVLIPTRNSASVNATVWKVSAGALGR 229
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ + N++ L ++G+ ++G N +P +LV G+EG+GL LV
Sbjct: 230 IPVAREANLVHALKECKKHGYFIVGLDAGGSETTRNLTVADEPIVLVTGAEGSGLSRLVR 289
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C + IP AVESLN +VA G+ ++ +
Sbjct: 290 ETCDVIASIP----------------------------IHAAVESLNAAVATGIAIYDI 320
>gi|452751871|ref|ZP_21951616.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [alpha
proteobacterium JLT2015]
gi|451961090|gb|EMD83501.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [alpha
proteobacterium JLT2015]
Length = 256
Score = 115 bits (287), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/214 (40%), Positives = 111/214 (51%), Gaps = 41/214 (19%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
MV G+ PHQGLVL+ L V + EL + D + V LD+VTDP N+GAIIRSA
Sbjct: 75 MVPGDAPHQGLVLEVDALPHVHLDEL--WAGGGDPRPILV-LDQVTDPHNVGAIIRSAAA 131
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVS 477
FGA+G+V ++S P SG ++KA+SG+LE + N+ + L AE G WR+ G
Sbjct: 132 FGAAGIVTQDRHSPPESGALAKAASGALERLPWARVTNLSRALEEIAEAGYWRI--GMAG 189
Query: 478 SKAVPLNEIPPGQ----PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
A + +P Q P LVLG+EG GLRP V C L R+P I D
Sbjct: 190 EAA---DTLPAAQRGDMPACLVLGAEGDGLRPNVAGHCDVLARLP-----------ISD- 234
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AVESLNVS AA V L+ +
Sbjct: 235 ----------------AVESLNVSNAAAVALYEV 252
>gi|183985047|ref|YP_001853338.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
gi|254806447|sp|B2HJ20.1|Y5079_MYCMM RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
gi|183178373|gb|ACC43483.1| tRNA/rRNA methyltransferase [Mycobacterium marinum M]
Length = 310
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G+ + D++ E V + A++ GI I E
Sbjct: 69 ETVLGRNPVLECLRAGV-PSTALYVALGV--------EADERLTESVSRAADS-GIPILE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D A L VALD ++DP+NLGA
Sbjct: 119 VPRTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPA-LLVALDNISDPRNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ M + N+ + L A+ G RV
Sbjct: 178 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRV 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++++ P ++V+GSEG GL LV ++C +V +P P
Sbjct: 238 VGLDAGGDTA-IDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGP--------- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 288 -------------------TESLNASVAAGVVLAEI 304
>gi|340793476|ref|YP_004758939.1| hypothetical protein CVAR_0516 [Corynebacterium variabile DSM
44702]
gi|340533386|gb|AEK35866.1| hypothetical protein CVAR_0516 [Corynebacterium variabile DSM
44702]
Length = 318
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/295 (30%), Positives = 139/295 (47%), Gaps = 45/295 (15%)
Query: 270 QENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKK 329
+ +SGR K+ P P++V G PV+ L A ALYV +L + N
Sbjct: 57 RRDSGRQAKKD--PDNTPELV----VGRNPVIECLHAHV-PSTALYV----ALGTGN--- 102
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
D + E V AE GI + E ++ +++ + GN HQG+ L P + +L +
Sbjct: 103 -DDRLSEAVHTAAER-GIPVLEVARDEMDRMTGNGMHQGIGLQVPPYKYAADDDLIERAK 160
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
D + L V LD +TDP+NLGA+IRS FG GVV+ + SA ++ V + S+G+ +
Sbjct: 161 DSGRPGLIVVLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVTWRTSAGTAARL 220
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
+ N+++ L ++G++V+G L+ P ++V+GSEG GL LV
Sbjct: 221 PVARATNLVRSLKKFQQSGYQVVGLDAGGSHT-LDTYDGTDPVVVVVGSEGKGLSRLVGE 279
Query: 510 SCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+C ++ IP VESLN SVAAGV+L
Sbjct: 280 TCDDILSIP----------------------------MTSTVESLNASVAAGVVL 306
>gi|88808428|ref|ZP_01123938.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
gi|88787416|gb|EAR18573.1| hypothetical protein WH7805_02022 [Synechococcus sp. WH 7805]
Length = 370
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L + G HQG+ L + E + + +L A +A
Sbjct: 106 FMQLLRDAKASGVLVEEVTWARLAQMTGGAVHQGIALQTAAAETLDLSDLIEGCAALQEA 165
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAI+RSA GA GVVL + SA L+G V+K ++G+LE + +
Sbjct: 166 PLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 225
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + + G+RV+G + L E+ P ++V GSE GL L R C HL
Sbjct: 226 VNLNRSLETLKDAGYRVVGLAEEGDQT-LEEVDLDGPLVVVTGSEDQGLSMLTRRHCDHL 284
Query: 515 VRIP 518
+RIP
Sbjct: 285 IRIP 288
>gi|38234534|ref|NP_940301.1| SpoU rRNA methylase [Corynebacterium diphtheriae NCTC 13129]
gi|38200797|emb|CAE50501.1| SpoU rRNA Methylase family protein [Corynebacterium diphtheriae]
Length = 313
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 132/275 (48%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK LY+ EG K D + E V ++A + GI + E
Sbjct: 70 ELVVGRNPVVECLHAKV-PATTLYIVEG--------TKNDNRLSEAV-QIAHSRGIPMIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+H+++++ GN HQG+ L P + + +L + + V LD +TDP+NLGA
Sbjct: 120 VPRHEMDLMTGNGMHQGIGLQIPPYKYTTVFDLIGRINSTGEDGMVVVLDNITDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + + +NG++V
Sbjct: 180 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNITRAVQEFQQNGYQV 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G A L+ P ++V+GSEG G+ LV +C L+ IP
Sbjct: 240 VGLDAGGDAT-LDNYDGSGPVVIVVGSEGKGISRLVRDNCDSLMSIP------------- 285
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 286 -----------------MAGWVESLNASVAAGVVL 303
>gi|432113615|gb|ELK35897.1| rRNA methyltransferase 1, mitochondrial [Myotis davidii]
Length = 237
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/213 (36%), Positives = 111/213 (52%), Gaps = 40/213 (18%)
Query: 371 LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
++ SPL E +D LW+ L+ + DP+NLGA++RSA+F G V+ +N
Sbjct: 1 MEVSPLRPRPWTEAPEARPGDDPQQLWLVLERLQDPRNLGAVLRSAHFLGVDQVITSRRN 60
Query: 431 ----SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLN 484
S PL+ VVSKAS+G++E+M++ + +++ FL + A GW V G G + +
Sbjct: 61 RHGHSCPLTPVVSKASAGAMEVMDIFFTDDLDGFLQAKARQGWLVAGTVGCPGPEIPGSS 120
Query: 485 EIPP--------GQPTILVLGSEGTGLRPLVERSCTHLVRI-PGNIPVDVTAGEIDDVDA 535
EIP QPT+LVLG+EG+GL P V+ SC L+ I PG
Sbjct: 121 EIPITSCLEFLWDQPTLLVLGNEGSGLSPEVQASCQLLLTILPGR--------------- 165
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
Q +ESLNVSVAAG+LLH +
Sbjct: 166 ----------QLPPGLESLNVSVAAGILLHSIC 188
>gi|335054144|ref|ZP_08546964.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
434-HC2]
gi|387502750|ref|YP_005943979.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 6609]
gi|422456516|ref|ZP_16533180.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL030PA1]
gi|315106473|gb|EFT78449.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL030PA1]
gi|333765260|gb|EGL42614.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
434-HC2]
gi|335276795|gb|AEH28700.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 6609]
Length = 318
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 42/276 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL YV EG S R+ +L A + GI++ +
Sbjct: 71 EWVIGRNPVLEALHVGL-PVRTAYVAEGAEHDSRLRE---------ILTFAADHGIALMQ 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ + G HQG+ L E + +L L VALD+VTDP+NLGA
Sbjct: 121 ATRGELDRMTGGSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA GV++ ++ SA ++ K S+G+ + + +N+ Q L A GW +
Sbjct: 181 IIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMI 240
Query: 472 LGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+G ++ +A PG P +LV+GSEG GL L +SC L IP
Sbjct: 241 VG--LAGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIP----------- 287
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ +D VESLN SVAA + L+
Sbjct: 288 ---ISSD--------------VESLNASVAASIALY 306
>gi|50841866|ref|YP_055093.1| tRNA/rRNA methyltransferase [Propionibacterium acnes KPA171202]
gi|50839468|gb|AAT82135.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes
KPA171202]
Length = 318
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 42/276 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL YV EG S R+ +L A + GI++ +
Sbjct: 71 EWVIGRNPVLEALHVGL-PVRTAYVAEGAEHDSRLRE---------ILTFAADHGIALMQ 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ + G HQG+ L E + +L L VALD+VTDP+NLGA
Sbjct: 121 ATRGELDRMTGGSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA GV++ ++ SA ++ K S+G+ + + +N+ Q L A GW +
Sbjct: 181 IIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMI 240
Query: 472 LGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+G ++ +A PG P +LV+GSEG GL L +SC L IP
Sbjct: 241 VG--LAGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIP----------- 287
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ +D VESLN SVAA + L+
Sbjct: 288 ---ISSD--------------VESLNASVAASIALY 306
>gi|385800586|ref|YP_005836990.1| TrmH family RNA methyltransferase [Halanaerobium praevalens DSM
2228]
gi|309389950|gb|ADO77830.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
praevalens DSM 2228]
Length = 246
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 12/223 (5%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G PV AL K R+ + +++QE ++ K E +L++A I I S
Sbjct: 6 GRNPVYEALKGK-RKIHRIFIQEEIT----------AKIIEDILELAAEKNIPISRISSQ 54
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
LN + HQG++ +A LE +++++ I A +D SL V LDE+ DP N GAIIR+
Sbjct: 55 KLNESAQSHAHQGVIAEADALESYQLEDVIEIKAQKDGDSLVVILDEIKDPHNFGAIIRT 114
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
AY GA VV + + ++ VV KA++G+ E + L +N+ + E + + G
Sbjct: 115 AYAAGADAVVYQERRAVGITPVVLKAAAGAAEHLPLVQVSNINYAIRDLKEANFWIAGAD 174
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
++ E G LV+GSEG+GLR LV +C LV+IP
Sbjct: 175 AAADQTHF-EADFGGSIGLVIGSEGSGLRRLVRENCDFLVKIP 216
>gi|282853445|ref|ZP_06262782.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes J139]
gi|386070920|ref|YP_005985816.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes ATCC
11828]
gi|395203220|ref|ZP_10394454.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
humerusii P08]
gi|422389840|ref|ZP_16469937.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL103PA1]
gi|422441581|ref|ZP_16518390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA3]
gi|422458565|ref|ZP_16535217.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA2]
gi|422463868|ref|ZP_16540481.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL060PA1]
gi|422465766|ref|ZP_16542355.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA4]
gi|422468751|ref|ZP_16545282.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA3]
gi|422472908|ref|ZP_16549389.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA2]
gi|422566178|ref|ZP_16641817.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL082PA2]
gi|422573114|ref|ZP_16648679.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL044PA1]
gi|422576976|ref|ZP_16652513.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL001PA1]
gi|282582898|gb|EFB88278.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes J139]
gi|313835566|gb|EFS73280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA2]
gi|314922188|gb|EFS86019.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL001PA1]
gi|314928559|gb|EFS92390.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL044PA1]
gi|314965269|gb|EFT09368.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL082PA2]
gi|314970347|gb|EFT14445.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA3]
gi|314982475|gb|EFT26568.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA3]
gi|315092231|gb|EFT64207.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA4]
gi|315094029|gb|EFT66005.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL060PA1]
gi|315104399|gb|EFT76375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA2]
gi|327329367|gb|EGE71127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL103PA1]
gi|328908174|gb|EGG27933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
humerusii P08]
gi|353455286|gb|AER05805.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes ATCC
11828]
Length = 318
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 130/276 (47%), Gaps = 42/276 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL YV EG S R+ +L A + GI++ +
Sbjct: 71 EWVIGRNPVLEALHVGL-PVRTAYVAEGAEHDSRLRE---------ILTFAADHGIALMQ 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ + G HQG+ L E + +L L VALD+VTDP+NLGA
Sbjct: 121 ATRGELDRMTGGSNHQGVALRLPEYEYATVDDLIAAGNQTYHGGLIVALDKVTDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA GV++ ++ SA ++ K S+G+ + + +N+ Q L A GW +
Sbjct: 181 IIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARVPVAMASNLNQALGKFAATGWMI 240
Query: 472 LGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+G ++ +A PG P +LV+GSEG GL L +SC L IP
Sbjct: 241 VG--LAGEADSDIAAAPGLDGPLVLVVGSEGEGLARLTRQSCDVLTSIP----------- 287
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ +D VESLN SVAA + L+
Sbjct: 288 ---ISSD--------------VESLNASVAASIALY 306
>gi|445446872|ref|ZP_21443503.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-A-92]
gi|444759814|gb|ELW84276.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-A-92]
Length = 249
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 82/268 (30%), Positives = 130/268 (48%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AKT +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKTEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQLLAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + ++V+G+E TGLRP+ + C IP + G
Sbjct: 181 ENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|425768763|gb|EKV07279.1| hypothetical protein PDIG_73540 [Penicillium digitatum PHI26]
gi|425776123|gb|EKV14357.1| hypothetical protein PDIP_44010 [Penicillium digitatum Pd1]
Length = 600
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/342 (26%), Positives = 148/342 (43%), Gaps = 77/342 (22%)
Query: 283 PSTVPKMV--GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P T+P E +YG V AAL R+ Y LY+ + S + + K + L
Sbjct: 255 PDTIPYTTPASEFIYGTSAVEAALRCSRRQLYKLYIYQ-----STDEELSAAKVTIRKLA 309
Query: 341 MAENMGISIKETSKHDL-NMVVGNRPHQGLVLDASPLEMVKIK---------------EL 384
+++N+ + + L + + RPH G +L+ASPL + ++ EL
Sbjct: 310 LSKNIAVKMAFAGWDRLMDKMSAGRPHNGCILEASPLPKLPVRGLQAVPSISEEYFRAEL 369
Query: 385 DP-------ISADEDQASLW------------------VALDEVTDPQNLGAIIRSAYFF 419
P ++ +D+ ++ + LD V D N+GAIIRS+YF
Sbjct: 370 APQTREEAAVNGTDDRIRIYHSCPPPHENEQRHRYPIVLLLDGVVDTGNMGAIIRSSYFL 429
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
G +VL +NSAPLS + K S+G+ E M + + N + F+ S +NGWR +
Sbjct: 430 GVDALVLAGRNSAPLSPITIKCSAGAAENMPILHVKNEVDFIQRSQQNGWRFYAADTPTP 489
Query: 480 -AVPLNEIPPG------------QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
+V L+ I P+++++GSE TGL ++ ++ IPG +
Sbjct: 490 GSVHLDHISTDGDQSGAKLPSLTAPSVIMMGSEATGLSSHIKSHADAIISIPGARQNFIL 549
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
E D ++SLNVSVAA +L+ +
Sbjct: 550 GVESDPA----------------RIDSLNVSVAAALLMEKFL 575
>gi|349581359|dbj|GAA26517.1| K7_Mrm1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 412
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K+L+ + + ++
Sbjct: 122 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KILQTVDELKVTT 168
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 169 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 228
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 229 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 288
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 289 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTFGKTISMHDLNGLCNE 348
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 349 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 390
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 391 IVDSLNVSVATALLIDNIL 409
>gi|323302933|gb|EGA56737.1| Mrm1p [Saccharomyces cerevisiae FostersB]
Length = 412
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K+L+ + + ++
Sbjct: 122 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KILQTVDELKVTT 168
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 169 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 228
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 229 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 288
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 289 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNE 348
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 349 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 390
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 391 IVDSLNVSVATALLIDNIL 409
>gi|340507295|gb|EGR33282.1| rRNA methyltransferase 1, putative [Ichthyophthirius multifiliis]
Length = 294
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 117/216 (54%), Gaps = 18/216 (8%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ LYG+ P AL+A R+ L + E + K+ ++ +A+ I I
Sbjct: 41 DYLYGLNPTQIALNANKRKIVELSLNESV-------KQNLPPKIANIINIAQQKEIPINY 93
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ +V ++PHQ +++ PL+ ++I S+D Q + V LD++TDPQN GA
Sbjct: 94 MKRDKLDKLVKHQPHQNVIIKCEPLKYIRIN-----SSDIFQGKIIVFLDQITDPQNFGA 148
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+R+ ++ G VV+ PL+ VSK SSG++ELM++ +N ++F+ + W+V
Sbjct: 149 ILRTCFYLGVDNVVVEESKRCPLNSTVSKTSSGAMELMDIFCTSNSVEFIKECQKLKWKV 208
Query: 472 LGGSV----SSKAVPLNEIPPGQPTILVLGSEGTGL 503
V ++K + L+++ +++LGSEG+G+
Sbjct: 209 FACGVNFGQNNKQISLDKLKLN--IVIILGSEGSGV 242
>gi|407277642|ref|ZP_11106112.1| tRNA/rRNA methyltransferase [Rhodococcus sp. P14]
Length = 320
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 132/281 (46%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G + D++ E V + A + G
Sbjct: 76 PEMV----LGRNPVVECLRADV-PATALYVAVG--------AEADERLKEAVQR-AGDAG 121
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E + +L+ + N HQG+ L P +L ++ D + L VALD +TDP
Sbjct: 122 ISILEVPRGELDRLTANGMHQGIGLQVPPYRYAHPDDLLAVAHDNHERPLLVALDNITDP 181
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA+IRS FG GV++ + SA +S V + S+G+ + + N+ + L
Sbjct: 182 RNLGAVIRSVAAFGGHGVLIPQRRSAAVSAVAWRTSAGAAARLPVARATNLTRTLKDWQS 241
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G RV+G L++ P ++V+GSEG GL LV +C ++ IP
Sbjct: 242 RGVRVVGLDAGGDTT-LDDFDGTDPVVIVVGSEGKGLSRLVRETCDSILSIP-------M 293
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AG+ VESLN SVAAGV+L +
Sbjct: 294 AGD---------------------VESLNASVAAGVVLADI 313
>gi|406038424|ref|ZP_11045779.1| tRNA/rRNA methyltransferase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 249
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 131/269 (48%), Gaps = 39/269 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPI-SADEDQASLWVALDEVTDPQNLGAIIRSAY 417
+ G HQG+V P + K+LD + A D +L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGMPFHQGVVAAVRPHPTLNEKDLDQLLQATPD--ALLLALDQVTDPHNLGACIRTAA 119
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSV 476
G V++ SA L+ K ++G E ++ N+ + L E + RV+G +
Sbjct: 120 AMGVQAVIVPRDRSAGLTPTARKVAAGGAEKVKFIQVTNLARTLAHVKEQFFLRVIGTML 179
Query: 477 SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+P+ + ++V+G+E TGLRP+ + C V IP
Sbjct: 180 DEKALPIQKCDLTGGVVIVMGAEDTGLRPITQSQCDQTVYIP----------------MS 223
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
GN ++SLNVSVA G+ L+
Sbjct: 224 GN------------LQSLNVSVATGMALY 240
>gi|452960278|gb|EME65606.1| tRNA/rRNA methyltransferase [Rhodococcus ruber BKS 20-38]
Length = 320
Score = 114 bits (285), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 132/281 (46%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G + D++ E V + A + G
Sbjct: 76 PEMV----LGRNPVVECLRADV-PATALYVAVG--------AEADERLKEAVQR-AGDAG 121
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E + +L+ + N HQG+ L P +L ++ D + L VALD +TDP
Sbjct: 122 ISILEVPRGELDRLTANGMHQGIGLQVPPYRYAHPDDLLAVAHDNHERPLLVALDNITDP 181
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA+IRS FG GV++ + SA +S V + S+G+ + + N+ + L
Sbjct: 182 RNLGAVIRSVAAFGGHGVLIPQRRSAAVSAVAWRTSAGAAARLPVARATNLTRTLKDWQS 241
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G RV+G L++ P ++V+GSEG GL LV +C ++ IP
Sbjct: 242 RGVRVVGLDAGGDTT-LDDFDGTDPVVIVVGSEGKGLSRLVRETCDSILSIP-------M 293
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AG+ VESLN SVAAGV+L +
Sbjct: 294 AGD---------------------VESLNASVAAGVVLADI 313
>gi|410895369|ref|XP_003961172.1| PREDICTED: rRNA methyltransferase 1, mitochondrial-like [Takifugu
rubripes]
Length = 375
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 139/283 (49%), Gaps = 41/283 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G+ P ALS R+ + L+V++G + + KV + A + + I S
Sbjct: 112 VFGIAPCFLALSEGRRKAFKLFVKDG--------EATQRASVLKVCEEAHSRRVQICHVS 163
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS-LWVALDEVTDPQNLGAI 412
K DL+ + R HQG+ L AS L+ + + + + LW+ L+E+ DP NLGAI
Sbjct: 164 KKDLDKMCLGRVHQGVCLQASRLDYLTKASRNTLGDKGNNGPPLWLVLEEIQDPMNLGAI 223
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSAYF G V S PLS VVSKASSG +E+ME+ ++ L GW+V+
Sbjct: 224 LRSAYFLGVDRVASSLHRSCPLSPVVSKASSGVMEVMEVYGYESLEDLLRMKVAQGWQVV 283
Query: 473 GGSVSSKAVPLN-------EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
GSV + A ++ + +PT+L++G EG GL + C L+ IP
Sbjct: 284 -GSVGTDAEAMHTPILRCSDFQLTKPTLLLMGGEGGGLSRELLSLCQALLTIP------- 335
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AG VESLNVSVAAG+LLH ++
Sbjct: 336 -AGR----------------NLLPGVESLNVSVAAGILLHSVL 361
>gi|441519491|ref|ZP_21001164.1| putative RNA methyltransferase [Gordonia sihwensis NBRC 108236]
gi|441460749|dbj|GAC59125.1| putative RNA methyltransferase [Gordonia sihwensis NBRC 108236]
Length = 317
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 134/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV ++ ++ R K+ + A + GISI E
Sbjct: 74 EYVVGRNPVVECLRAGV-PATALYVMT--TVDADERVKE-------AVHTAGDRGISILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+K +L+ + N HQGL L + +L + QA L VALD +TDP+NLGA
Sbjct: 124 VAKPELDRMSPNGLHQGLALQVPEYQYAHPDDLMADALAAPQAPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ M + N+ + L+ A+ G ++
Sbjct: 184 VIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARMPVAATPNLNRTLLDWAKKGAQI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP AGE
Sbjct: 244 VGLDAGGD-VSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIP-------IAGE-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVL 307
>gi|296447196|ref|ZP_06889126.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
trichosporium OB3b]
gi|296255255|gb|EFH02352.1| RNA methyltransferase, TrmH family, group 3 [Methylosinus
trichosporium OB3b]
Length = 270
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 120/231 (51%), Gaps = 24/231 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AL A+ R+ LY EG E++ +A G++ +
Sbjct: 36 LYGAHAVREALRARRRKLLTLYATEG--------------AAERIAPLAAEAGLTPQIVD 81
Query: 354 KHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
L +G+ HQGL+L+A PL +I ++ E ++ + + LD+VTDP N+GAI
Sbjct: 82 PRALTSRLGDESVHQGLLLEARPLPAAEIADI------ETKSGVVLVLDQVTDPHNVGAI 135
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A F +V+ +NS L+GV++KA+SG+LE + + N+ + L +++G V+
Sbjct: 136 LRTAAAFAVDALVMTDRNSPELTGVLAKAASGALEHVLIVSVVNLARALQELSQSGRLVV 195
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G + A PL E P LVLG+EG GLR L C L R+ PG I
Sbjct: 196 GLDSEAPA-PLEETRLQNPIALVLGAEGKGLRRLTRERCDVLARLDMPGPI 245
>gi|150865226|ref|XP_001384357.2| mitochondrial rRNA methyltransferase [Scheffersomyces stipitis CBS
6054]
gi|149386482|gb|ABN66328.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 423
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 107/372 (28%), Positives = 166/372 (44%), Gaps = 106/372 (28%)
Query: 260 EKPEYQRWNRQENSGRTTWKEAAPSTVPK--------MVGEGLYGVGPVLAALSAKTREF 311
E+ E R R SGR ++ V + + E +YG V +AL + R
Sbjct: 86 EQRENARAERMAKSGRENHSDSEQYRVSRDRTPIGKNSLFEYVYGTHSVRSALESGKRSS 145
Query: 312 YA-LYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN-MGISIKE-TSKHDLNMVVGNRPHQG 368
Y+ LYV +D++ ++K+AE G+ I E +SK+DLN++ N H G
Sbjct: 146 YSRLYVHNC----------QDRQ----LIKIAETKYGVKIVERSSKNDLNILCNNGVHNG 191
Query: 369 LVLDASPLEMVKIKEL------------------------------DPISADEDQAS--L 396
+VL+ LE+ I L DP+ DE A L
Sbjct: 192 VVLETKSLELNTIHSLGACQDNEYKVTVYNDLDDAEVEIVKTVARTDPVE-DEPVAKMPL 250
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LD +TDPQN+G IIRSAY+FG +V+ ++A L V +KAS G+++L+++ N
Sbjct: 251 GIFLDGITDPQNMGGIIRSAYYFGVDFIVVPGSHTARLGPVANKASVGAMDLIDIYETNE 310
Query: 457 MMQFLVSSAENGWRVLGGS---------------------VSSKAVPLNEIP---PGQPT 492
++F+ NGW V+ S + +K V +NE+P P
Sbjct: 311 SLKFIDRIRANGWSVVSTSAKPSVDEINDLKSKHEKVEQQLKNKYVDMNELPNILSQTPV 370
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
+LV+GSEG G+R TH+ ++ + V + G D V+
Sbjct: 371 LLVMGSEGEGIR-------THM-KLRSDFLVGIDKGRKQD----------------HIVD 406
Query: 553 SLNVSVAAGVLL 564
SLNVSVA+G+L+
Sbjct: 407 SLNVSVASGILI 418
>gi|333918034|ref|YP_004491615.1| putative tRNA/rRNA methyltransferase [Amycolicicoccus subflavus
DQS3-9A1]
gi|333480255|gb|AEF38815.1| Putative tRNA/rRNA methyltransferase [Amycolicicoccus subflavus
DQS3-9A1]
Length = 323
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 79/223 (35%), Positives = 117/223 (52%), Gaps = 30/223 (13%)
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
GISI E + DL+ + N HQG+ L P + +EL S D+ L VALD +TD
Sbjct: 122 GISILEVPRGDLDKMTTNGLHQGIALQVPPYQYAHPEELIDASRSSDEPGLVVALDNITD 181
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+NLGA+IRS FG +GV++ + SA ++ V + S+G+ + + N+ + L + A
Sbjct: 182 PRNLGAVIRSTGAFGGNGVLIPERRSASVTAVAWRTSAGAAARVPVARATNLTRALKAFA 241
Query: 466 ENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
E+G+ + G S AV L+E P ++V+GSEG GL LV+ +C +V +P
Sbjct: 242 ESGY-FIAGLDSEGAVSLDEFTSTDMPLVVVVGSEGKGLSRLVKETCDVIVSVP------ 294
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AG+ VESLN SVAAGV+L +
Sbjct: 295 -MAGD---------------------VESLNASVAAGVVLADI 315
>gi|407641673|ref|YP_006805432.1| tRNA/rRNA methyltransferase [Nocardia brasiliensis ATCC 700358]
gi|407304557|gb|AFT98457.1| tRNA/rRNA methyltransferase [Nocardia brasiliensis ATCC 700358]
Length = 327
Score = 114 bits (285), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 133/281 (47%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G + D++ E V K+A + G
Sbjct: 84 PEMV----LGRNPVVECLRAGV-PAAALYVAVG--------TENDERLTESV-KLAADAG 129
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E + DL+ + N HQGL L P +L + + +L VALD ++DP
Sbjct: 130 ISILEVPRTDLDRLSANGMHQGLALQVPPYRYSHPDDLLDQVRNSAEPALLVALDNISDP 189
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L A
Sbjct: 190 RNLGAVIRSVAAFGGQGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWAA 249
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G +V+G L++ +PT++V+GSEG GL LV +C ++ IP P
Sbjct: 250 QGIQVVGLDAGGDTT-LDDFDGREPTVIVVGSEGKGLSRLVRENCDAILGIPMAGP---- 304
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 305 ------------------------VESLNASVAAGVVLAEI 321
>gi|398365713|ref|NP_014844.3| Mrm1p [Saccharomyces cerevisiae S288c]
gi|1346886|sp|P25270.2|MRM1_YEAST RecName: Full=rRNA methyltransferase, mitochondrial; AltName:
Full=21S rRNA [GM2251] 2'O-methyltransferase; AltName:
Full=Mitochondrial large ribosomal RNA ribose methylase;
Flags: Precursor
gi|431760|gb|AAA74564.1| ribosomal RNA methylase [Saccharomyces cerevisiae]
gi|1420475|emb|CAA99414.1| PET56 [Saccharomyces cerevisiae]
gi|285815081|tpg|DAA10974.1| TPA: Mrm1p [Saccharomyces cerevisiae S288c]
gi|392296529|gb|EIW07631.1| Mrm1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 412
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K L++ + + ++
Sbjct: 122 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KFLQIVDELKVTT 168
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 169 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 228
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 229 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 288
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 289 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNE 348
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 349 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 390
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 391 IVDSLNVSVATALLIDNIL 409
>gi|227547938|ref|ZP_03977987.1| possible tRNA/rRNA methyltransferase [Corynebacterium
lipophiloflavum DSM 44291]
gi|227079949|gb|EEI17912.1| possible tRNA/rRNA methyltransferase [Corynebacterium
lipophiloflavum DSM 44291]
Length = 314
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 132/272 (48%), Gaps = 40/272 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PV+ L AK AL+V L + ++R + + +A + G+ + E
Sbjct: 70 VVGRNPVVECLHAKV-PAEALFV--ALGTAHDDR-------LSEAVTLANSKGLPVHEVP 119
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ DL+ + GN HQG+ L P + + +L D Q ++V LD +TDP+NLGA+I
Sbjct: 120 RRDLDTMTGNGLHQGIGLKIQPYKYADVFDLMAGVKDRGQTGMFVVLDNITDPRNLGAVI 179
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RS FG GV++ + SA ++GV + S+G+ + + N+ + + +NG+ V+G
Sbjct: 180 RSTAAFGGHGVIIPERRSAQVTGVAWRTSAGTAARLPVAKAVNITRTIKEFKDNGYIVVG 239
Query: 474 GSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
+ L+ G P ++V+GSEG G+ LV +C L+ IP
Sbjct: 240 LDAGGEHT-LDTFDGGADPVVIVVGSEGKGISRLVRENCDVLMSIP-------------- 284
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
E + VESLN SVAAGV+L
Sbjct: 285 ---------TESW-----VESLNASVAAGVVL 302
>gi|384567697|ref|ZP_10014801.1| rRNA methylase, putative, group 3 [Saccharomonospora glauca K62]
gi|384523551|gb|EIF00747.1| rRNA methylase, putative, group 3 [Saccharomonospora glauca K62]
Length = 322
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/278 (32%), Positives = 137/278 (49%), Gaps = 46/278 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PV+ AL A ALYV L++ +++R + +++A + GISI E
Sbjct: 77 IAGRNPVVEALRAGV-PATALYVA--LNIDADDR-------VTEAVRVAADKGISILEVP 126
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +L+ N HQGL L P EL + + + L VALD VTDP+NLGAI+
Sbjct: 127 RDELDRKTNNAVHQGLGLQVPPFSYATPDELLKAARESGEPPLLVALDGVTDPRNLGAIV 186
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FGA GV+L ++ SA ++ V + S+G+ + + N+ + L A G ++G
Sbjct: 187 RSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLREWASEGLMIVG 246
Query: 474 ----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
GSV ++ ++ P ++V+GSEG GL LV+ +C + V IP + AG
Sbjct: 247 LDADGSVDIDSMNIDV----DPLVIVIGSEGRGLSRLVKETCDYTVSIP------MAAG- 295
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVA VLL +
Sbjct: 296 ---------------------VESLNASVAGAVLLAEV 312
>gi|456391224|gb|EMF56597.1| RNA methyltransferase [Streptomyces bottropensis ATCC 25435]
Length = 306
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 98/321 (30%), Positives = 149/321 (46%), Gaps = 44/321 (13%)
Query: 252 RRDVKARTEKP--EYQRWNRQENSGRTTWKEAAPSTVPKMVG-----EGLYGVGPVLAAL 304
R+ ++ R P E ++ ++ K+AA P+ G E + G PV+ AL
Sbjct: 16 RKGLEGRGPTPPAEMRKKHKANRIANAKAKQAARRPAPRGRGGKGTSEMVVGRNPVVEAL 75
Query: 305 SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
LYVQ+ + D++ E + AE GI++ E + +L+ +
Sbjct: 76 REGV-PASTLYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGL 126
Query: 365 PHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGV 424
HQGLVL E ++L + DE Q L VALD VTDP+NLGA++RS FG GV
Sbjct: 127 NHQGLVLQVPAYEYAHPEDLTNAAYDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGV 186
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN 484
V+ + +A ++ K S+G+ + C N+ + L + + G V+G + + +
Sbjct: 187 VVPERRAAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYKKAGVVVVGLAADGETEIGD 246
Query: 485 EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQ 544
G P ++V+GSEG GL LV +C H VRIP +P G A
Sbjct: 247 LEALGGPVVIVVGSEGKGLSRLVGETCDHRVRIP--MP-----------------GGA-- 285
Query: 545 FQSFMAVESLNVSVAAGVLLH 565
ESLN VAAGV+L+
Sbjct: 286 -------ESLNAGVAAGVVLY 299
>gi|354606346|ref|ZP_09024317.1| hypothetical protein HMPREF1003_00884 [Propionibacterium sp.
5_U_42AFAA]
gi|365973273|ref|YP_004954832.1| TrmH family RNA methyltransferase [Propionibacterium acnes TypeIA2
P.acn33]
gi|386023324|ref|YP_005941627.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
gi|422384365|ref|ZP_16464506.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL096PA3]
gi|422429028|ref|ZP_16505933.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL072PA2]
gi|422447573|ref|ZP_16524305.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA3]
gi|422479607|ref|ZP_16556017.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL063PA1]
gi|422481630|ref|ZP_16558029.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA1]
gi|422487706|ref|ZP_16564037.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL013PA2]
gi|422489152|ref|ZP_16565479.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL020PA1]
gi|422497912|ref|ZP_16574185.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA3]
gi|422504138|ref|ZP_16580375.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL027PA2]
gi|422504841|ref|ZP_16581075.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA2]
gi|422509322|ref|ZP_16585480.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL046PA2]
gi|422514303|ref|ZP_16590424.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA2]
gi|422535250|ref|ZP_16611173.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL072PA1]
gi|422553043|ref|ZP_16628830.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA3]
gi|422554723|ref|ZP_16630493.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA2]
gi|422567661|ref|ZP_16643287.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA2]
gi|313806516|gb|EFS45023.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA2]
gi|313817383|gb|EFS55097.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL046PA2]
gi|313821873|gb|EFS59587.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA1]
gi|313824231|gb|EFS61945.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA2]
gi|313826598|gb|EFS64312.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL063PA1]
gi|314926687|gb|EFS90518.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL036PA3]
gi|314961108|gb|EFT05209.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA2]
gi|314980411|gb|EFT24505.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL072PA2]
gi|314987252|gb|EFT31343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA2]
gi|314988859|gb|EFT32950.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA3]
gi|315082487|gb|EFT54463.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL027PA2]
gi|315086198|gb|EFT58174.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA3]
gi|315087783|gb|EFT59759.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL072PA1]
gi|327333437|gb|EGE75157.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL096PA3]
gi|327445543|gb|EGE92197.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL013PA2]
gi|328758785|gb|EGF72401.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL020PA1]
gi|332674780|gb|AEE71596.1| putative tRNA/rRNA methyltransferase [Propionibacterium acnes 266]
gi|353557753|gb|EHC27121.1| hypothetical protein HMPREF1003_00884 [Propionibacterium sp.
5_U_42AFAA]
gi|365743272|gb|AEW78469.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes TypeIA2 P.acn33]
Length = 318
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 102/348 (29%), Positives = 156/348 (44%), Gaps = 51/348 (14%)
Query: 227 GTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPE-----YQRW--NRQENSGRTTWK 279
G ++ GE ++ S + + R R+ +K R P+ Y + +QE R +
Sbjct: 3 GNSQRRGEGHKSKSSAVGSGGRG--RKALKGRGPTPKAEDRVYHKAYKAKQEKLARAAAR 60
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
+ A E + G PVL AL A YV EG S R +L
Sbjct: 61 KPANRQSTGAGPEWVIGRNPVLEALHAGL-PVRTAYVAEGAEHDSRLRA---------IL 110
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
+ GI++ + ++ +L+ + G HQG+ L E + +L + L VA
Sbjct: 111 TFCADHGIALMQATRGELDRMTGGSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVA 170
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQ 459
LD+VTDP+NLGAIIRSA FGA GV++ ++ SA ++ K S+G+ + + N+ Q
Sbjct: 171 LDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQ 230
Query: 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRI 517
L A GW ++G ++ +A PG P ++V+GSEG GL L +SC L I
Sbjct: 231 ALGKFAAAGWMIVG--LAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASI 288
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
P + +D VESLN SVAA + L+
Sbjct: 289 P--------------ISSD--------------VESLNASVAASIALY 308
>gi|289579164|ref|YP_003477791.1| TrmH family RNA methyltransferase [Thermoanaerobacter italicus Ab9]
gi|289528877|gb|ADD03229.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
italicus Ab9]
Length = 249
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 138/277 (49%), Gaps = 41/277 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ ++G PV+ A+ + +E +YV K K K++ +A+ GI +
Sbjct: 7 DAIFGRNPVMEAIKS-GKEIEKIYVS-----------KTAKGNISKIINLAKEAGIVVST 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
T L+ + G++ HQG+V ++ + ++++L + + + + LDE+TDP NLGA
Sbjct: 55 TDNETLSKLAGSQNHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGA 114
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FG G+++ + + ++ V K S+G++E M++ +N+ + + E G +
Sbjct: 115 IIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEYMKIAKVSNINNTIRNLKERGLWI 174
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V+ EI P LV+G+EG G+ LV ++C +V+IP G+I+
Sbjct: 175 IGTDVNGGK-SFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIP-------MKGKIN 226
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA +L++ +V
Sbjct: 227 ---------------------SLNASVAASILIYQVV 242
>gi|326202357|ref|ZP_08192226.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
gi|325987475|gb|EGD48302.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
papyrosolvens DSM 2782]
Length = 319
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 94/335 (28%), Positives = 157/335 (46%), Gaps = 59/335 (17%)
Query: 248 RNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAP------------STVPKMVGEGLY 295
R +F D K R KPE ++ + E + RTT+ AAP + VP+ + L
Sbjct: 25 RKNFSSDSKKRGGKPEERKGFKSEPAKRTTY--AAPVKDTEFENIEKENAVPEE-NDKLE 81
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG-YEKVLKMAENMGISIKETSK 354
G ++ AL A R L++ +G +K+G +++ MA GI E K
Sbjct: 82 GRNSIMEALKA-NRTINKLFIAKG-----------EKEGSIRQIIAMARQKGIITTEVDK 129
Query: 355 HDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIR 414
L+ + R HQG++ + + V++ ++ + ++ + + LDE++DP N GAI+R
Sbjct: 130 SILDGMSSTRSHQGVIAYVAVKDYVEVDDILAAAQEKGEPPFIIILDEISDPHNFGAILR 189
Query: 415 SAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLG 473
+A GA GV++ + + L+ VSKAS+G++E + + N+ Q + +N W V
Sbjct: 190 TANAVGAHGVIIPKRRAIGLTSTVSKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGT 249
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
S KA +++ P LV+GSEG G+ LV C +V IP GEI
Sbjct: 250 DSTGEKAFYESDLK--GPMALVVGSEGEGMGKLVREKCDFVVNIP-------MKGEIS-- 298
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA ++++ ++
Sbjct: 299 -------------------SLNASVAAAIVMYEIL 314
>gi|451945138|ref|YP_007465774.1| SpoU rRNA methylase family protein [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
gi|451904525|gb|AGF73412.1| SpoU rRNA methylase family protein [Corynebacterium halotolerans
YIM 70093 = DSM 44683]
Length = 318
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 133/273 (48%), Gaps = 38/273 (13%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV EG +SN+ + + ++ A + I + E
Sbjct: 69 ELVVGRNPVIECLHARV-PATALYVAEG---ASNDDR------LSEAVQTAASRSIPLIE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+H+L+ + GN HQG+ L P E ++ +L D + + V LD +TDP+NLGA
Sbjct: 119 VPRHELDRMTGNGMHQGIGLQIPPYEYTEVFDLISSVKDRGEDGMIVVLDNITDPRNLGA 178
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + + +NG++V
Sbjct: 179 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVARATNLTRTIKEFQQNGYQV 238
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + P ++V+GSEG G+ LV+ +C ++ +P +
Sbjct: 239 VGLDAGGEHTLDTYDGGAGPVVIVVGSEGKGISRLVKENCDVIMSVP-----------MT 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
D VESLN SVAAGV+L
Sbjct: 288 D-----------------WVESLNASVAAGVVL 303
>gi|120406285|ref|YP_956114.1| RNA methyltransferase [Mycobacterium vanbaalenii PYR-1]
gi|254806469|sp|A1TG08.1|Y5337_MYCVP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
gi|119959103|gb|ABM16108.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
vanbaalenii PYR-1]
Length = 314
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 128/273 (46%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G D++ E V ++A + GI+I E
Sbjct: 71 EIVLGRNPVLECLRAGV-PATALYVALG--------ADSDERLTESV-QIAADKGIAILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P +L + + +L VALD ++DP+NLGA
Sbjct: 121 VPRHDLDRIAANGMHQGIALQVPPYNYAHPDDLLAEAKSDAMPALLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + N+ + L A+ G +V
Sbjct: 181 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G +++I P ++V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDADGDTT-VDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 291 -------------------TESLNASVAAGVVL 304
>gi|169335511|ref|ZP_02862704.1| hypothetical protein ANASTE_01925 [Anaerofustis stercorihominis DSM
17244]
gi|169258249|gb|EDS72215.1| RNA methyltransferase, TrmH family, group 3 [Anaerofustis
stercorihominis DSM 17244]
Length = 242
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 125/235 (53%), Gaps = 30/235 (12%)
Query: 334 GYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQ 393
G ++KMA++ GISI++T+ H L+ + G+ HQG++ SP+E + ++EL ++
Sbjct: 35 GLVSIIKMAKSKGISIQKTNNHKLDSMSGSTHHQGVLALCSPVETISLRELIEKMNEKVT 94
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
L V LD +TDP N GAIIRSAY GA GV++ + SA + + K+S+G++E ++L
Sbjct: 95 KPLVVILDNITDPHNAGAIIRSAYCAGADGVIMQTRRSASIGEGMYKSSAGAIEHIDLCE 154
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
+N+ Q + + + G V+G ++ + ++ P LV+G+EG GL L++ C
Sbjct: 155 VSNIAQTIDTLKKEGLFVVGLDMNGE--NYYDMDYDMPLALVVGAEGKGLGRLIKEKCDF 212
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ IP +D D SLN SVAAG++L V
Sbjct: 213 ISSIPLK----------NDFD------------------SLNASVAAGIVLFEAV 239
>gi|363419539|ref|ZP_09307639.1| tRNA/rRNA methyltransferase [Rhodococcus pyridinivorans AK37]
gi|359737014|gb|EHK85949.1| tRNA/rRNA methyltransferase [Rhodococcus pyridinivorans AK37]
Length = 322
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/281 (32%), Positives = 134/281 (47%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G + D++ E V + AE MG
Sbjct: 79 PEMV----LGRNPVVECLRAGV-PATALYVALG--------AEADERLKEAVQRSAE-MG 124
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E S+ +L+ + N HQG+ L P +L +A+ + L VALD ++DP
Sbjct: 125 ISILEVSRSELDRLSSNGMHQGIGLQVPPYRYAHPDDLLARAAENHERPLLVALDNISDP 184
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L
Sbjct: 185 RNLGAVIRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQS 244
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G RV+G L++ P ++V+GSEG GL LV +C ++ IP
Sbjct: 245 RGVRVVGLDAGGD-TNLDDFDGTDPVVVVVGSEGKGLSRLVRETCDAVLSIP-------M 296
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AG+ VESLN SVAAGV+L +
Sbjct: 297 AGD---------------------VESLNASVAAGVVLADI 316
>gi|289424339|ref|ZP_06426122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK187]
gi|295129939|ref|YP_003580602.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK137]
gi|335052420|ref|ZP_08545308.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
409-HC1]
gi|342212508|ref|ZP_08705233.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
CC003-HC2]
gi|365962092|ref|YP_004943658.1| TrmH family RNA methyltransferase [Propionibacterium acnes TypeIA2
P.acn31]
gi|365964335|ref|YP_004945900.1| TrmH family RNA methyltransferase [Propionibacterium acnes TypeIA2
P.acn17]
gi|407934756|ref|YP_006850398.1| TrmH family RNA methyltransferase [Propionibacterium acnes C1]
gi|417931110|ref|ZP_12574483.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK182]
gi|419420595|ref|ZP_13960824.1| TrmH family RNA methyltransferase [Propionibacterium acnes PRP-38]
gi|422387214|ref|ZP_16467331.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL096PA2]
gi|422392013|ref|ZP_16472087.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL099PA1]
gi|422395065|ref|ZP_16475106.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL097PA1]
gi|422424991|ref|ZP_16501937.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL043PA1]
gi|422427141|ref|ZP_16504059.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA1]
gi|422431958|ref|ZP_16508828.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL059PA2]
gi|422435024|ref|ZP_16511882.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL083PA2]
gi|422436724|ref|ZP_16513571.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL092PA1]
gi|422442741|ref|ZP_16519544.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA1]
gi|422446536|ref|ZP_16523281.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL027PA1]
gi|422450114|ref|ZP_16526831.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL030PA2]
gi|422453174|ref|ZP_16529870.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA3]
gi|422460519|ref|ZP_16537153.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL038PA1]
gi|422474016|ref|ZP_16550486.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL056PA1]
gi|422476683|ref|ZP_16553122.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL007PA1]
gi|422484107|ref|ZP_16560486.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL043PA2]
gi|422491670|ref|ZP_16567981.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL086PA1]
gi|422494249|ref|ZP_16570544.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL025PA1]
gi|422500349|ref|ZP_16576605.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL063PA2]
gi|422511464|ref|ZP_16587607.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL059PA1]
gi|422515521|ref|ZP_16591633.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA2]
gi|422518092|ref|ZP_16594164.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL074PA1]
gi|422520739|ref|ZP_16596781.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL045PA1]
gi|422523669|ref|ZP_16599681.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL053PA2]
gi|422526231|ref|ZP_16602230.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL083PA1]
gi|422528458|ref|ZP_16604440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL053PA1]
gi|422531386|ref|ZP_16607334.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA1]
gi|422535917|ref|ZP_16611825.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL078PA1]
gi|422538406|ref|ZP_16614280.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL013PA1]
gi|422541189|ref|ZP_16617047.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA1]
gi|422543737|ref|ZP_16619577.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL082PA1]
gi|422546446|ref|ZP_16622273.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA3]
gi|422550870|ref|ZP_16626667.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA1]
gi|422557637|ref|ZP_16633380.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL025PA2]
gi|422559108|ref|ZP_16634836.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA1]
gi|422562442|ref|ZP_16638120.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL046PA1]
gi|422570581|ref|ZP_16646176.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL067PA1]
gi|422578185|ref|ZP_16653714.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA4]
gi|289155036|gb|EFD03718.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK187]
gi|291376216|gb|ADE00071.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK137]
gi|313765526|gb|EFS36890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL013PA1]
gi|313772926|gb|EFS38892.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL074PA1]
gi|313793051|gb|EFS41118.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA1]
gi|313802499|gb|EFS43721.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL110PA2]
gi|313811064|gb|EFS48778.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL083PA1]
gi|313814434|gb|EFS52148.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL025PA1]
gi|313815073|gb|EFS52787.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL059PA1]
gi|313828595|gb|EFS66309.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL063PA2]
gi|313831828|gb|EFS69542.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL007PA1]
gi|313834629|gb|EFS72343.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL056PA1]
gi|313840140|gb|EFS77854.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL086PA1]
gi|314915834|gb|EFS79665.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA4]
gi|314917109|gb|EFS80940.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA1]
gi|314921384|gb|EFS85215.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL050PA3]
gi|314931296|gb|EFS95127.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL067PA1]
gi|314954882|gb|EFS99288.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL027PA1]
gi|314958816|gb|EFT02918.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL002PA1]
gi|314964466|gb|EFT08566.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL082PA1]
gi|314969565|gb|EFT13663.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL037PA1]
gi|314974630|gb|EFT18725.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL053PA1]
gi|314977176|gb|EFT21271.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL045PA1]
gi|314985727|gb|EFT29819.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL005PA1]
gi|315078519|gb|EFT50550.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL053PA2]
gi|315082017|gb|EFT53993.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL078PA1]
gi|315097464|gb|EFT69440.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL038PA1]
gi|315099914|gb|EFT71890.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL059PA2]
gi|315101773|gb|EFT73749.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL046PA1]
gi|315110269|gb|EFT82245.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL030PA2]
gi|327331450|gb|EGE73189.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL096PA2]
gi|327334963|gb|EGE76674.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL097PA1]
gi|327447162|gb|EGE93816.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL043PA1]
gi|327449803|gb|EGE96457.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL043PA2]
gi|327454652|gb|EGF01307.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA3]
gi|327456726|gb|EGF03381.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL083PA2]
gi|327457002|gb|EGF03657.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL092PA1]
gi|328755707|gb|EGF69323.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL087PA1]
gi|328756486|gb|EGF70102.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL025PA2]
gi|328761793|gb|EGF75306.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes HL099PA1]
gi|333763912|gb|EGL41328.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
409-HC1]
gi|340768052|gb|EGR90577.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium sp.
CC003-HC2]
gi|340769433|gb|EGR91957.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK182]
gi|365738773|gb|AEW82975.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes TypeIA2 P.acn31]
gi|365741016|gb|AEW80710.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes TypeIA2 P.acn17]
gi|379978969|gb|EIA12293.1| TrmH family RNA methyltransferase [Propionibacterium acnes PRP-38]
gi|407903337|gb|AFU40167.1| TrmH family RNA methyltransferase [Propionibacterium acnes C1]
gi|456740296|gb|EMF64823.1| TrmH family RNA methyltransferase [Propionibacterium acnes FZ1/2/0]
Length = 318
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 129/276 (46%), Gaps = 42/276 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL A YV EG S R +L + GI++ +
Sbjct: 73 EWVIGRNPVLEALHAGL-PVRTAYVAEGAEHDSRLRA---------ILTFCADHGIALMQ 122
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ + G HQG+ L E + +L + L VALD+VTDP+NLGA
Sbjct: 123 ATRGELDRMTGGSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVALDKVTDPRNLGA 182
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA GV++ ++ SA ++ K S+G+ + + N+ Q L A GW +
Sbjct: 183 IIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFAAAGWMI 242
Query: 472 LGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+G ++ +A PG P ++V+GSEG GL L +SC L IP
Sbjct: 243 VG--LAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIP----------- 289
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ +D VESLN SVAA + L+
Sbjct: 290 ---ISSD--------------VESLNASVAASIALY 308
>gi|321472938|gb|EFX83907.1| hypothetical protein DAPPUDRAFT_315299 [Daphnia pulex]
Length = 250
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/225 (36%), Positives = 117/225 (52%), Gaps = 17/225 (7%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G V+AAL RE + L KD + + +A+ +S K
Sbjct: 20 LWGTHSVIAALENTQRECHQLL--------CTRDALKDVEPF-----LAKRPKLSPKILP 66
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN ++ HQG+ L SPL + L+ A A V LD++TDPQN+GAI+
Sbjct: 67 RDELNRLLPQTVHQGVALQVSPLPELF---LNTFLARSPAAKRLVILDQITDPQNVGAIL 123
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG GV++ ++S PL GVV K++SG+LE + L N+ Q L G+ G
Sbjct: 124 RSACAFGFDGVLMTERHSPPLEGVVGKSASGALEKIPLLMTANVAQGLRLLKTEGFWCWG 183
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S +PL+++P LVLG+EG GLRPL + C LVR+P
Sbjct: 184 LS-EEGTLPLSQLPCEGSLALVLGAEGKGLRPLTAQLCDGLVRLP 227
>gi|374987743|ref|YP_004963238.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
gi|297158395|gb|ADI08107.1| putative RNA methyltransferase [Streptomyces bingchenggensis BCW-1]
Length = 317
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/357 (29%), Positives = 160/357 (44%), Gaps = 49/357 (13%)
Query: 220 NVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWK 279
N +N+ TA ++G + KRR + + K T E ++ + ++ K
Sbjct: 4 NSQRRNRRTANKKGATV-----GSGGKRRRAL--EGKGPTPPAEMRKGHAKQRVANARAK 56
Query: 280 EAAPSTVPKMVG-----EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG 334
+AA P+ G E + G PV+ AL LYVQ+ + D++
Sbjct: 57 QAARRPAPRRGGGKGTNELVVGRNPVVEALREGV-PASMLYVQQFID--------SDERV 107
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
E + A+ GI + E + +L+ + HQGLVL P E ++L +A+E Q
Sbjct: 108 REALKLAADRGGIHLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLLDAAAEEGQD 167
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD VTDP+NLGA++RS FG GVV+ + +A ++ K S+G+ +
Sbjct: 168 PLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARA 227
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + + G V+G N P ++V GSEG GL LV +C L
Sbjct: 228 TNLTRALEAYKKAGLMVVGLDADGDTEVQNAEVLDGPVVIVAGSEGKGLSRLVAETCDVL 287
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
VRIP +P G A ESLN VA GV+L+ +V H+
Sbjct: 288 VRIP--MP-----------------GGA---------ESLNAGVATGVVLYEVVRHR 316
>gi|347758969|ref|YP_004866531.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Micavibrio aeruginosavorus ARL-13]
gi|347591487|gb|AEP10529.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Micavibrio aeruginosavorus ARL-13]
Length = 501
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 141/282 (50%), Gaps = 51/282 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET- 352
LYG+ V AA R +ALY+ E + + VL+ A G++ E
Sbjct: 263 LYGMHAVRAAWLNPNRNIHALYLSEAAMET-----------FAPVLEEAAKAGLNRPEPL 311
Query: 353 --SKHDLNMVVGNRP----HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
SK D++ + P HQG+ L LE V +++L IS + + S+ V LD+VTDP
Sbjct: 312 AVSKDDMDRLF---PPGAVHQGIALACGQLEDVSVEDLI-ISGNAKERSVIVMLDQVTDP 367
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
N+GAI+RSA FGA+GVV+ ++ L GV++K + G+++ +++ Y N+ + L E
Sbjct: 368 HNVGAILRSASAFGATGVVMQKMHAPELIGVLAKTACGAVDHLDVAYETNLSRTLEKLKE 427
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
+G+ +G + + E+ + ++VLG+EG G+R LV +C LVR+P + P
Sbjct: 428 DGYVTIGMDERGEKT-IAELDRPEKCVIVLGAEGPGMRRLVRENCDVLVRLPTHEP---- 482
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ SLNVS AA V L+ ++
Sbjct: 483 ------------------------IASLNVSNAAAVALYAML 500
>gi|119192340|ref|XP_001246776.1| hypothetical protein CIMG_00547 [Coccidioides immitis RS]
gi|392863983|gb|EAS35227.2| RNA methyltransferase, TrmH family, group 3 [Coccidioides immitis
RS]
Length = 495
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 150/356 (42%), Gaps = 95/356 (26%)
Query: 276 TTWKEAAPSTVPKM--VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK 333
T P +P M V E +YG PV +A+ A R+ YALY+ E + +
Sbjct: 121 TKVSRVPPPAIPYMSAVSEFIYGFHPVRSAIRAGRRKIYALYLCERPT------NQLSGS 174
Query: 334 GYEKVLKMAENMGISIKETSK---HDLNMVVGNRPHQGLVLDASPLE------------- 377
G + K+A G +K S L+ V HQG+V + SPL
Sbjct: 175 GLNSLQKLAVTAGAKVKIVSSEWSQALSRVCKEVNHQGIVAEVSPLPKLPALSYEQVASL 234
Query: 378 ------------------------MVKIKELDPISADEDQAS------LWVALDEVTDPQ 407
++ + L S D+ + + LD + DP
Sbjct: 235 PVTNFNVKVAPQSKEEAAVNGTSGLIPLTSLRQNSYDDHRTQHNPRYPFTLLLDGIVDPH 294
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGAI+RSAY+FGA V ++NSAPLS VV K+SSG+ E + L ++ + F+ +S N
Sbjct: 295 NLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRN 354
Query: 468 GWRVLGGS--------------VSSKAVPLNEIPPGQPTILVLGSEGTGL-RPLVERSCT 512
GWR VSSK +P NE+ P +L+LG+EG GL + L ++
Sbjct: 355 GWRFFAAEPPASVAPDSKNKNIVSSKNLP-NEL-QNYPCVLMLGNEGDGLSKELKSKADA 412
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V VD I D V+SLNV+VA+G+L +
Sbjct: 413 SVV-------VDCPRKHIVD-----------------EVDSLNVAVASGILCQAFM 444
>gi|408828354|ref|ZP_11213244.1| TrmH family RNA methyltransferase [Streptomyces somaliensis DSM
40738]
Length = 316
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 106/351 (30%), Positives = 162/351 (46%), Gaps = 50/351 (14%)
Query: 220 NVYAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWK 279
N +N+ T+ ++G A S N+RR+ + K T ++ + + K
Sbjct: 4 NSQRRNRRTSNKKG----ATVGSGGNRRRSL---EGKGPTPPAHMRKGHTKNRIANAKAK 56
Query: 280 EAAPSTVPKMVGEG----LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGY 335
+AA V + G+G + G PV AL LYVQ+ N+ + +D
Sbjct: 57 QAARRPVARRGGKGQSEMVVGRNPVYEALRDGV-PATTLYVQQ---FIDNDERVRD---- 108
Query: 336 EKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
LK+A + G I + E + +L+ + HQGLVL P E ++L + DE +
Sbjct: 109 --ALKLAADRGGIHLMEAPRAELDRMTNGLNHQGLVLQVPPYEYAHPEDLAAAAYDEGEE 166
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD VTDP+NLGAI+RS FG GVV+ + +A ++ K S+G+ +
Sbjct: 167 PLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARA 226
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + + G V+G + + + P ++V+GSEG GL LV +C HL
Sbjct: 227 TNLTRALEAYQKAGLTVVGLAAEGETEVGDLEALEGPVVIVVGSEGKGLSRLVGETCDHL 286
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
VRIP +P G A ESLN VAAGV+L+
Sbjct: 287 VRIP--MP-----------------GGA---------ESLNAGVAAGVVLY 309
>gi|262200970|ref|YP_003272178.1| TrmH family RNA methyltransferase [Gordonia bronchialis DSM 43247]
gi|262084317|gb|ACY20285.1| RNA methyltransferase, TrmH family, group 3 [Gordonia bronchialis
DSM 43247]
Length = 316
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 136/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV +SN+ + D++ E V K+A + GI++ E
Sbjct: 73 EYVLGRNPVLECLRAGV-PATALYV------ASNS--EPDERVAEAV-KIAGDAGIALLE 122
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L +L + +L VALD +TDP+NLGA
Sbjct: 123 VGKPELDRLSTNGLHQGVALQVPEYTYAHPDDLLAAAKASGTPALLVALDNITDPRNLGA 182
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + N+ + L AE+G ++
Sbjct: 183 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQATNLTRTLKDWAESGAQL 242
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV SC ++ IP AG+
Sbjct: 243 VGLDADGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIP-------MAGD-- 292
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 293 -------------------VESLNASVAAGVVL 306
>gi|383820294|ref|ZP_09975551.1| RNA methyltransferase [Mycobacterium phlei RIVM601174]
gi|383335296|gb|EID13727.1| RNA methyltransferase [Mycobacterium phlei RIVM601174]
Length = 313
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 132/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G + D++ E V ++A + GISI E
Sbjct: 70 EMVLGRNPVVECLRAGV-PATALYVALG--------AEADERLTESV-QLAADAGISILE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+H+L+ + N HQG+ L P + +L + + L VALD ++DP+NLGA
Sbjct: 120 VQRHELDRLSANGLHQGVALQVPPYDYAHPDDLLSAATADGSPPLLVALDNISDPRNLGA 179
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L S A+ G ++
Sbjct: 180 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRALKSWADAGLQI 239
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 240 VGLDAGGDTT-VDELDGTGPIVVVVGSEGKGLSRLVRETCDAVVSIPMAGP--------- 289
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 290 -------------------TESLNASVAAGVVLAEI 306
>gi|108761000|ref|YP_631271.1| RNA methyltransferase [Myxococcus xanthus DK 1622]
gi|108464880|gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
1622]
Length = 282
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 132/274 (48%), Gaps = 38/274 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PVLAAL A+ E L++ EG + + ++L A GI +++ +
Sbjct: 37 VYGVNPVLAALRARPDEVERLFLVEG---------QLGARAAGELLSRAREFGIRVEKVT 87
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L + HQG+V++ + ++++L + Q L V LD + DP NLGAII
Sbjct: 88 RERLGTLAEGGVHQGVVVELRGFKYAELEDLLEAAKALGQPPLVVVLDGIQDPHNLGAII 147
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA GA GVV+ + ++G V+KAS+G++E + N+ + L E G V
Sbjct: 148 RSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARVVNISRALEELKEAGLWVAA 207
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V +K P+ P LV+G+EG G+R V + C +RIP AG++
Sbjct: 208 ADVDAKE-PMWSARLDGPLALVVGAEGAGVRDGVLKHCDFRLRIP-------MAGQVG-- 257
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
SLN SV+AG+LL+ +
Sbjct: 258 -------------------SLNASVSAGILLYEV 272
>gi|325088121|gb|EGC41431.1| RNA methyltransferase [Ajellomyces capsulatus H88]
Length = 462
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 118/446 (26%), Positives = 182/446 (40%), Gaps = 121/446 (27%)
Query: 239 VSDSK-WNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWK--------EAAPSTVPKM 289
+ DS+ W++R + R D+ + + + R+ N+ R + E +P T P++
Sbjct: 27 IKDSQTWDRRDSQRRNDMASNKSSLSFPKNRRERNAERLAERSEQTEYTLERSPHTQPQV 86
Query: 290 -------------VGEGLYGVGPVLAALSAKTREFYALYVQ---EGLSLSSNNRKKKDKK 333
E +YG VLAAL R+ Y LY+ + +SL +D
Sbjct: 87 SITAPRSIPYTTAASEFVYGSSAVLAALRCGRRKLYKLYIHNAPDKVSLRLGRHSPRDPM 146
Query: 334 GYEKVLKMAENMGISIKETSKH---DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA- 389
+ ++K G+S+K+ + + L + G RPH G +L+AS L + + L + +
Sbjct: 147 -LDTIIKFGLAAGVSVKQVAGNWPKLLEKMSGGRPHNGCILEASQLPKLPVNGLLAVESP 205
Query: 390 --------------------------------DEDQAS------------LWVALDEVTD 405
D D +S + LD + D
Sbjct: 206 LDNHFNVSVCQQSVEEADVNGTSGRIPRSTYRDGDSSSTGNDIKLAPRYPFALLLDGIRD 265
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
N+GAIIRSAY+FG ++L +NSA +S V KAS+G+ E + + N FL ++
Sbjct: 266 EGNVGAIIRSAYYFGVDAIILSTRNSATISAVAVKASAGAAENIPILTTTNPTLFLKNTH 325
Query: 466 ENGWRVLGG-----------SVSSKA----------VPLNEIPPGQPTILVLGSEGTGLR 504
NGWR S+S+ A LNE P IL+LGSE GL+
Sbjct: 326 MNGWRFFAAEAPAAAIASQQSLSTSAEQILSRRDVKSKLNE----APCILMLGSEDQGLQ 381
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
V + +V IPG I + GE D V+SLNVSVA+ +L
Sbjct: 382 KSVRQQADGVVVIPGAI---TSTGEEDRA----------------GVDSLNVSVASALLC 422
Query: 565 HHLVGHQVSNN---SHIEDSSTATVD 587
+G S S E+ +TVD
Sbjct: 423 EAFLGDPSSTGPGLSSSEEGMMSTVD 448
>gi|325282460|ref|YP_004255001.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
proteolyticus MRP]
gi|324314269|gb|ADY25384.1| RNA methyltransferase, TrmH family, group 3 [Deinococcus
proteolyticus MRP]
Length = 239
Score = 113 bits (282), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 31/227 (13%)
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVAL 400
+A+ G+ +++ + +L+ + G HQG++ +A L + + ++ +A L V L
Sbjct: 38 LADEAGVRVRQAPRIELDQLAGTTAHQGVLAEAEELSWSSPQAIWDLAERRGEAPLLVLL 97
Query: 401 DEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQF 460
D +TDP+N GAI+RSA GA GVV+ + SAPLS VV+K ++G+ + + N+ +F
Sbjct: 98 DGITDPRNFGAIVRSAEVLGAHGVVVEERRSAPLSAVVAKTAAGATAYLPVVQVKNLPRF 157
Query: 461 LVSSAE-NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519
+ + N W + G+ A PL P LV+GSEG GLR LV C LV IP
Sbjct: 158 IEELKDRNVW--VYGAAGEAAQPLERTDLSGPVALVIGSEGDGLRRLVRERCDGLVSIP- 214
Query: 520 NIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
G+ V+SLN SVAAG+L++
Sbjct: 215 ------VRGQ---------------------VQSLNASVAAGILIYE 234
>gi|397669478|ref|YP_006511013.1| TrmH family RNA methyltransferase [Propionibacterium propionicum
F0230a]
gi|395143732|gb|AFN47839.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
propionicum F0230a]
Length = 316
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 138/281 (49%), Gaps = 40/281 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PVL AL+A YV EG ++D + +LK A + + + +
Sbjct: 75 VVGRNPVLEALTAGL-PLKQAYVAEG--------AERDDR-LRDILKFAAEHSLPLLQVT 124
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +L+ V G HQG+ L + ++++ + + L VALD+VTDP+NLGAII
Sbjct: 125 RAELDRVTGGLVHQGVALQLPAFDYTDVEDIFDAAFEVPSRGLVVALDQVTDPRNLGAII 184
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FGA GVV+ A+ SA ++ K S+G+ + + N+ Q L ++ G+ V+G
Sbjct: 185 RSAAAFGAQGVVIPARRSASMTAAAWKTSAGAAARIPVARVTNLNQMLRRASGAGFTVVG 244
Query: 474 GSVSSKAVPLNEIPP-GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
PL+ IP P ++V+GSEG GL LV +C LV IP +T+
Sbjct: 245 -LAGEGDTPLSGIPGLDGPVVVVVGSEGEGLARLVRENCDALVSIP------ITS----- 292
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
AVESLN SVAA + L+ + +VS
Sbjct: 293 -----------------AVESLNASVAASIALYEIGQQRVS 316
>gi|297568265|ref|YP_003689609.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
alkaliphilus AHT2]
gi|296924180|gb|ADH84990.1| RNA methyltransferase, TrmH family, group 3 [Desulfurivibrio
alkaliphilus AHT2]
Length = 264
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 131/271 (48%), Gaps = 43/271 (15%)
Query: 295 YGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSK 354
+G V A LS + L++ ++D + ++L++A GI +
Sbjct: 28 WGFHAVYALLSHRPATVAQLFIS----------PRRDDQRIRELLELAARHGIPVHTEIP 77
Query: 355 HDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQASLWVALDEVTDPQNLGAII 413
DLN+ HQG+V ++ L + E+Q L +ALD + DP+NLGAII
Sbjct: 78 ADLNLE-EEISHQGVVARVKATGQPTLEGLLASLQPKENQ--LLLALDSIQDPRNLGAII 134
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A FGA G+++ SAPL+G V KA++G+L L+ + N+ Q L ++G+ + G
Sbjct: 135 RTAAAFGADGLLIPKDRSAPLTGTVMKAAAGTLPLLTICRVTNLSQSLAQLKKHGFWIYG 194
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ L++ P LV+G+E GLRPLV R C HLV IP + AG
Sbjct: 195 AGGQAPQ-QLHQTSFSGPICLVMGNEQKGLRPLVSRHCDHLVAIP------MAAG----- 242
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLNV+VA GV+L
Sbjct: 243 -----------------VESLNVAVATGVIL 256
>gi|401623545|gb|EJS41641.1| pet56p [Saccharomyces arboricola H-6]
Length = 412
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 80/272 (29%), Positives = 125/272 (45%), Gaps = 58/272 (21%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA------- 389
K+++ + +GI+ + KH LN++ H +VL+ PL+ ++I L + A
Sbjct: 156 KIMQKVDELGITTEPADKHRLNLLTNYGVHNNIVLETKPLQPMEIAYLGDVDAASAALTV 215
Query: 390 --------------------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAK 429
D + L + LDE+TDP N+GAIIRSAYF GA VV+ K
Sbjct: 216 HELGFSNENIMHEIPYSTKADCKRFPLGLYLDEITDPHNIGAIIRSAYFLGADFVVMSRK 275
Query: 430 NSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE-NGWRVLGGSVSSKAV------- 481
N +PL+ V SK SSG+LEL+ + Y + ++F S E GW + ++
Sbjct: 276 NCSPLTAVASKTSSGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLADATAEKYTTGK 335
Query: 482 -----PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
L + P +LV+G+E G+R ++ V IP AG +V A
Sbjct: 336 TLGVRDLCGMCTELPIVLVVGNESQGVRTNLKMRSDFFVEIP-------FAGSETNVRAP 388
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 389 EP-----------LVDSLNVSVATALLIDNIL 409
>gi|372270272|ref|ZP_09506320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Marinobacterium
stanieri S30]
Length = 251
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 127/276 (46%), Gaps = 41/276 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G+ V + L+ L VQ+G +D + + VL AE GI + E
Sbjct: 6 IFGLHAVTSLLNRNPGRVRRLLVQQG----------RDDERLQSVLDKAEAQGIKVIEEP 55
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ G HQG++ + PL+ + K L P+ A L + LD VTDP NLGA +
Sbjct: 56 RQQLDQRAGGGRHQGVIAECEPLKALNEKALGPLLDFAGDAPLILVLDGVTDPHNLGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
R+A GA+ V+ SAPL+ V+K + G+ E++ N+ + L S E G W +
Sbjct: 116 RTADAAGATVVIAPKDKSAPLNATVAKVACGAAEVVPYVQVTNLARTLQSLQERGIW--I 173
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G+ L ++ P LV+G+EG G+R L +C L+ IP AGE
Sbjct: 174 TGTAGEADGSLYQVDLTGPQALVMGAEGKGMRRLTRENCDQLISIP-------MAGE--- 223
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V SLNVSVA GV L +V
Sbjct: 224 ------------------VSSLNVSVATGVCLFEMV 241
>gi|448512291|ref|XP_003866711.1| Mrm1 protein [Candida orthopsilosis Co 90-125]
gi|380351049|emb|CCG21272.1| Mrm1 protein [Candida orthopsilosis Co 90-125]
Length = 434
Score = 112 bits (281), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 144/330 (43%), Gaps = 92/330 (27%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG P+ + L A+ R LY + N K+ KK Y GI ++
Sbjct: 138 EFVYGTHPIKSVLQARKRPILGLYTFN--ADDENGIIKQAKKEY----------GIKVQH 185
Query: 352 T-SKHDLNMVVGNRPHQGLVLDASPLEMVKIK--------------------ELDP---- 386
K+ LN++ N H GLVL L++ IK +LD
Sbjct: 186 VRDKNALNILSKNGVHNGLVLKTKALDVPYIKSCGHVENGSYTVTVEDDDGVDLDKERHV 245
Query: 387 -------ISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS 439
I +E+ L + LDEVTDPQN+G+I+R+AYFFG +V+ +SA L V +
Sbjct: 246 LRKKEESIDKEEELFPLALFLDEVTDPQNMGSILRTAYFFGVDFIVIPDHSSAKLGPVAN 305
Query: 440 KASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ--------- 490
KASSG+L+L+++ + ++F+ S ENGW V+ S L+++
Sbjct: 306 KASSGALDLIDIYQTDRSLKFIDSVRENGWNVISTSAKPDESNLDDLKDKNYKVEMSLKD 365
Query: 491 ---------------PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
P +LV+GSEG G+R ++ +LV I + E DD+
Sbjct: 366 RFIQLGDLKTVLKRTPVMLVVGSEGKGVRTNMKLRSDYLVGIQKH-------RENDDI-- 416
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V+SLNV VA GV++
Sbjct: 417 ---------------VDSLNVGVATGVIVQ 431
>gi|209964021|ref|YP_002296936.1| TrmH family RNA methyltransferase [Rhodospirillum centenum SW]
gi|209957487|gb|ACI98123.1| RNA methyltransferase, TrmH family, group 3 [Rhodospirillum
centenum SW]
Length = 251
Score = 112 bits (281), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 79/232 (34%), Positives = 127/232 (54%), Gaps = 13/232 (5%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQE-GLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
+YG+ PV AA R LYV E L+ ++ + G E+ + + +E
Sbjct: 11 IYGLHPVAAAWINPERRCRGLYVTESALAALDGAVQRAAELGLER----PDPTFLEKEEL 66
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
K ++ HQG+ LD +PL V ++++ I+A+ + +L + LD+VTDP N+GAI
Sbjct: 67 DK----LLPPGAVHQGVALDTAPLPEVAVEDVC-IAAESEPQALVIVLDQVTDPHNVGAI 121
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV 471
+RSA FGA V++ +++ P++GV++K +SG+++ + L N+ + L + + G W V
Sbjct: 122 MRSAAAFGARAVIVQDRHAPPVTGVLAKTASGAVDAVPLVRVTNLARALDTLKQAGFWTV 181
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
G S A PL+E+ T LVLGSEG GLR L C + R+P PV
Sbjct: 182 --GLDESGARPLHEVDLTGRTALVLGSEGEGLRRLTGERCDEIARLPTGGPV 231
>gi|300022432|ref|YP_003755043.1| TrmH family RNA methyltransferase [Hyphomicrobium denitrificans
ATCC 51888]
gi|299524253|gb|ADJ22722.1| RNA methyltransferase, TrmH family, group 3 [Hyphomicrobium
denitrificans ATCC 51888]
Length = 285
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 20/231 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ V AAL R + L + E ++++ + I +
Sbjct: 52 LFGLHAVEAALKNPKRRVHRLMLTE--------------NAERRLIEAVGPITAKIDRVT 97
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
DL+ ++G + HQG+ L+ PL EL A + LD+VTDP N+GAI
Sbjct: 98 PRDLDRLLGPDTVHQGVALETEPLPEPDWDEL----ARAADGRPLIVLDQVTDPHNVGAI 153
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RS+ FGASG+V+ ++S PL+GV++K++SG+LEL+ + N+ + + E G+ ++
Sbjct: 154 LRSSAVFGASGLVMTHRHSPPLNGVLAKSASGALELIPVALVANLARAMEELREAGFALV 213
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
G ++ + ++ +PT LV+GSEG GLR L ++C L RI + PV
Sbjct: 214 GLDGEAETA-IEDLDWSRPTALVMGSEGKGLRELTRKTCDTLARISTDGPV 263
>gi|377564227|ref|ZP_09793551.1| putative RNA methyltransferase [Gordonia sputi NBRC 100414]
gi|377528615|dbj|GAB38716.1| putative RNA methyltransferase [Gordonia sputi NBRC 100414]
Length = 317
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALY+ + N + D+ + +K+A + GI+I E
Sbjct: 74 EYVLGRNPVLECLRAGV-PATALYI-------AVNSEPDDR--VAESVKLAADKGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L + +L + + L VALD +TDP+NLGA
Sbjct: 124 VGKPELDRMSANGLHQGVALQVPEYQYAHPDDLMRDAMESGTPPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + N+ + L AE G ++
Sbjct: 184 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKEWAETGAQI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 244 VGLDTEGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRETCDSILSIP-------MAGD-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVLAEF 310
>gi|377560923|ref|ZP_09790400.1| putative RNA methyltransferase [Gordonia otitidis NBRC 100426]
gi|377521877|dbj|GAB35565.1| putative RNA methyltransferase [Gordonia otitidis NBRC 100426]
Length = 317
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 133/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALY+ + N + D+ + +K+A + GI+I E
Sbjct: 74 EYVLGRNPVLECLRAGV-PATALYI-------AVNSEPDDR--VAESVKLAADNGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L +L + + L VALD +TDP+NLGA
Sbjct: 124 VGKPELDRMSANGLHQGIALQVPEYRYAHPDDLMRDAIESGTPPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + +N+ + L AE G ++
Sbjct: 184 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQASNLTRTLKDWAETGAQI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 244 VGLDTEGD-VTLDDYEGTGPTVIVVGSEGKGLSRLVRETCDSILSIP-------MAGD-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVL 307
>gi|429731921|ref|ZP_19266544.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium durum
F0235]
gi|429144717|gb|EKX87826.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium durum
F0235]
Length = 312
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 135/273 (49%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L ALYV EG +NN D + E V ++A + G+SI E
Sbjct: 70 ELVVGRNPVVECLRTNV-PATALYVAEG----TNN----DDRLAEAV-RLANSRGVSIIE 119
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + G+ HQG+ L + ++++ +A Q L V LD +TDP+NLGA
Sbjct: 120 VSRLELDRMTGSSMHQGIGLQVPSYDYAHVEDIIDEAAASGQG-LVVCLDNITDPRNLGA 178
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+++ L + G++V
Sbjct: 179 VIRSVAAFGGQGVIIPERRSASVTAVAWRTSAGTAARLPVAKATNLVRTLKQFQQAGFQV 238
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L++ +PT++V+GSEG GL LV +C + IP
Sbjct: 239 VGLDADGDKT-LDDYDGTEPTVIVVGSEGKGLSRLVSETCDSKISIP------------- 284
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ VESLN SVAAGV+L
Sbjct: 285 ---------------TSDWVESLNASVAAGVVL 302
>gi|303312903|ref|XP_003066463.1| RNA methyltransferase, TrmH family, group 3 containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240106125|gb|EER24318.1| RNA methyltransferase, TrmH family, group 3 containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 495
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 103/351 (29%), Positives = 149/351 (42%), Gaps = 95/351 (27%)
Query: 276 TTWKEAAPSTVPKM--VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK 333
T P +P M V E +YG PV +A+ A R+ YALY+ E + +
Sbjct: 121 TKVSRVPPPAIPYMSAVSEFIYGFHPVRSAIRAGRRKIYALYLCERPT------NQLSGS 174
Query: 334 GYEKVLKMAENMGISIKETSK---HDLNMVVGNRPHQGLVLDASPLE------------- 377
G + K+A G +K S L+ V HQG+V + SPL
Sbjct: 175 GLNSLQKLAVTAGAKVKIVSSEWSQALSRVCKEVNHQGIVAEVSPLPKLPALSYEQVASL 234
Query: 378 ------------------------MVKIKELDPISADEDQAS------LWVALDEVTDPQ 407
++ + L S D+ + + LD + DP
Sbjct: 235 PVTNFNVKVAPQSKEEAAVNGTSGLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPH 294
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGAI+RSAY+FGA V ++NSAPLS VV K+SSG+ E + L ++ + F+ +S N
Sbjct: 295 NLGAILRSAYYFGADAVAFSSRNSAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRN 354
Query: 468 GWRVLGGS--------------VSSKAVPLNEIPPGQPTILVLGSEGTGL-RPLVERSCT 512
GWR VSSK +P NE+ P +L+LG+EG GL + L ++
Sbjct: 355 GWRFFAAEPPASVAPDSKNKNIVSSKNLP-NEL-QNYPCVLMLGNEGDGLSKELKSKADA 412
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVL 563
+V VD I D V+SLNV+VA+G+L
Sbjct: 413 SVV-------VDCPRKHIVD-----------------EVDSLNVAVASGIL 439
>gi|389720932|ref|ZP_10187688.1| tRNA/rRNA methyltransferase [Acinetobacter sp. HA]
gi|388609213|gb|EIM38405.1| tRNA/rRNA methyltransferase [Acinetobacter sp. HA]
Length = 249
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 83/269 (30%), Positives = 132/269 (49%), Gaps = 38/269 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK FY ++ E L L+ K +D + ++VL++AE GIS+++ S+ L
Sbjct: 2 AKPEYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+L+ + + QA L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPILNEKDLEELLKQDSQA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN-GWRVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L ++ RV+G +
Sbjct: 121 MGVVAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLGQIKDDFNVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+P+ + G +V+G+E TGLRP+ + C V IP AG +
Sbjct: 181 EKALPIQQFDFTGTGVCVVMGAEDTGLRPITQSQCDQTVYIP-------MAGNL------ 227
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 228 ---------------QSLNVSVATGMALY 241
>gi|189424926|ref|YP_001952103.1| RNA methyltransferase [Geobacter lovleyi SZ]
gi|189421185|gb|ACD95583.1| RNA methyltransferase, TrmH family, group 3 [Geobacter lovleyi SZ]
Length = 246
Score = 112 bits (280), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 80/271 (29%), Positives = 128/271 (47%), Gaps = 40/271 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ PV AL R+ + L+VQ G ++ R K+ +AE GI+++
Sbjct: 6 LYGINPVREALRG-NRKAFELFVQTG---GTDQR-------IAKLATLAEEKGIAVRRRE 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ DL + GN HQG+VL +P ++++ + + + LD + DPQNLGA+I
Sbjct: 55 RADLERLAGNPHHQGVVLKVAPFIYAELEDFLANHQESEGGMFLLVLDRIQDPQNLGALI 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA G GV++ + ++ VV KAS+G++E + + N++Q L + G + G
Sbjct: 115 RSAACAGVQGVIIPKDRACGMTPVVEKASAGAVETIPVIQVTNLVQTLERLKQAGCWIFG 174
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ + G LV+GSEG G+RPLV + C L+ IP
Sbjct: 175 LAGEANKDIYQADYRGN-LALVVGSEGEGIRPLVRKHCDLLLAIP--------------- 218
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ + SLN SVA G++L
Sbjct: 219 -------------HYGGISSLNASVAGGIVL 236
>gi|169634562|ref|YP_001708298.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii SDF]
gi|184156660|ref|YP_001844999.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|215484855|ref|YP_002327094.1| SpoU rRNA methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|239500941|ref|ZP_04660251.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii AB900]
gi|260556309|ref|ZP_05828528.1| rRNA methylase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|332854391|ref|ZP_08435343.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013150]
gi|332867606|ref|ZP_08437754.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013113]
gi|332873068|ref|ZP_08441025.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6014059]
gi|384130327|ref|YP_005512939.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
gi|384141614|ref|YP_005524324.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
MDR-ZJ06]
gi|385235927|ref|YP_005797266.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|387125426|ref|YP_006291308.1| rRNA methylase [Acinetobacter baumannii MDR-TJ]
gi|403674696|ref|ZP_10936930.1| tRNA/rRNA methyltransferase [Acinetobacter sp. NCTC 10304]
gi|407931265|ref|YP_006846908.1| rRNA methylase [Acinetobacter baumannii TYTH-1]
gi|416147200|ref|ZP_11601656.1| rRNA methylase [Acinetobacter baumannii AB210]
gi|417544500|ref|ZP_12195586.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC032]
gi|417548904|ref|ZP_12199985.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-18]
gi|417567140|ref|ZP_12218012.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC143]
gi|417571163|ref|ZP_12222020.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC189]
gi|417576609|ref|ZP_12227454.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-17]
gi|417870973|ref|ZP_12515917.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH1]
gi|417875632|ref|ZP_12520437.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH2]
gi|417879874|ref|ZP_12524425.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH3]
gi|417881969|ref|ZP_12526277.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH4]
gi|421203409|ref|ZP_15660548.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AC12]
gi|421534976|ref|ZP_15981243.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AC30]
gi|421620203|ref|ZP_16061141.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC074]
gi|421627292|ref|ZP_16068103.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC098]
gi|421630626|ref|ZP_16071327.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC180]
gi|421650904|ref|ZP_16091276.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC0162]
gi|421655151|ref|ZP_16095475.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-72]
gi|421662252|ref|ZP_16102420.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC110]
gi|421670959|ref|ZP_16110941.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC099]
gi|421675910|ref|ZP_16115829.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC065]
gi|421677344|ref|ZP_16117236.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC111]
gi|421688527|ref|ZP_16128227.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-143]
gi|421692701|ref|ZP_16132352.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-116]
gi|421694111|ref|ZP_16133743.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-692]
gi|421702063|ref|ZP_16141548.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ZWS1122]
gi|421705802|ref|ZP_16145223.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ZWS1219]
gi|421789987|ref|ZP_16226226.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-82]
gi|421792305|ref|ZP_16228460.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-2]
gi|421798001|ref|ZP_16234035.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-21]
gi|421808176|ref|ZP_16244033.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC035]
gi|424053913|ref|ZP_17791444.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
baumannii Ab11111]
gi|424061355|ref|ZP_17798845.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
baumannii Ab33333]
gi|424064849|ref|ZP_17802333.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
baumannii Ab44444]
gi|425749170|ref|ZP_18867150.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-348]
gi|425751448|ref|ZP_18869393.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-113]
gi|445407804|ref|ZP_21432397.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-57]
gi|445458045|ref|ZP_21446869.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC047]
gi|445465115|ref|ZP_21449893.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC338]
gi|445481538|ref|ZP_21455982.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-78]
gi|445492971|ref|ZP_21460729.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AA-014]
gi|169153354|emb|CAP02471.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii]
gi|183208254|gb|ACC55652.1| rRNA methylase [Acinetobacter baumannii ACICU]
gi|193076173|gb|ABO10788.2| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC
17978]
gi|213985701|gb|ACJ56000.1| SpoU rRNA Methylase family protein [Acinetobacter baumannii
AB307-0294]
gi|260410364|gb|EEX03663.1| rRNA methylase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|322506547|gb|ADX02001.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii 1656-2]
gi|323516426|gb|ADX90807.1| rRNA methylase [Acinetobacter baumannii TCDC-AB0715]
gi|332728067|gb|EGJ59458.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013150]
gi|332733880|gb|EGJ65026.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6013113]
gi|332738580|gb|EGJ69450.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii 6014059]
gi|333365771|gb|EGK47785.1| rRNA methylase [Acinetobacter baumannii AB210]
gi|342224985|gb|EGT89995.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH2]
gi|342226289|gb|EGT91262.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH1]
gi|342227208|gb|EGT92147.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH3]
gi|342238218|gb|EGU02651.1| SpoU rRNA methylase family protein [Acinetobacter baumannii ABNIH4]
gi|347592107|gb|AEP04828.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii
MDR-ZJ06]
gi|385879918|gb|AFI97013.1| rRNA methylase, putative, group 3 [Acinetobacter baumannii MDR-TJ]
gi|395551611|gb|EJG17620.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC189]
gi|395552812|gb|EJG18820.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC143]
gi|395569830|gb|EJG30492.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-17]
gi|398327062|gb|EJN43201.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AC12]
gi|400382388|gb|EJP41066.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC032]
gi|400389203|gb|EJP52275.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-18]
gi|404559987|gb|EKA65238.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-116]
gi|404561270|gb|EKA66506.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-143]
gi|404569950|gb|EKA75035.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-692]
gi|404667037|gb|EKB34967.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
baumannii Ab33333]
gi|404667399|gb|EKB35320.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
baumannii Ab11111]
gi|404672932|gb|EKB40736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Acinetobacter
baumannii Ab44444]
gi|407194826|gb|EKE65962.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ZWS1122]
gi|407195215|gb|EKE66349.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ZWS1219]
gi|407899846|gb|AFU36677.1| rRNA methylase [Acinetobacter baumannii TYTH-1]
gi|408508916|gb|EKK10592.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC0162]
gi|408509288|gb|EKK10963.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-72]
gi|408693383|gb|EKL38992.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC098]
gi|408697012|gb|EKL42532.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC180]
gi|408700863|gb|EKL46308.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC074]
gi|408715055|gb|EKL60185.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC110]
gi|409987124|gb|EKO43310.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AC30]
gi|410381427|gb|EKP33993.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC065]
gi|410383256|gb|EKP35789.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC099]
gi|410393100|gb|EKP45454.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC111]
gi|410395626|gb|EKP47920.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-21]
gi|410396413|gb|EKP48681.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-82]
gi|410400612|gb|EKP52780.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-2]
gi|410416355|gb|EKP68130.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC035]
gi|425489243|gb|EKU55555.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-348]
gi|425499895|gb|EKU65923.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-113]
gi|444762755|gb|ELW87108.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AA-014]
gi|444770330|gb|ELW94487.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-78]
gi|444775689|gb|ELW99745.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC047]
gi|444779247|gb|ELX03241.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC338]
gi|444780953|gb|ELX04878.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-57]
gi|452955602|gb|EME60999.1| rRNA methylase [Acinetobacter baumannii MSP4-16]
Length = 249
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 81/268 (30%), Positives = 129/268 (48%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQLLAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + ++V+G+E TGLRP+ + C IP + G
Sbjct: 181 ENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|445414117|ref|ZP_21433842.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter sp.
WC-743]
gi|444764936|gb|ELW89241.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter sp.
WC-743]
Length = 250
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 132/269 (49%), Gaps = 38/269 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK+ +Y ++ E L L+ K +D + +++L++AE GIS+++ S+ L
Sbjct: 2 AKSEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQRILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+L+ + D + L +ALD +TDP NLGA IR+A
Sbjct: 62 KLAGQPFHQGVVAAVRPHPVLNEKDLEQLLESTD-SPLLLALDHITDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN-GWRVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E+ RV+G +
Sbjct: 121 MGVEAVIVPRDRSATLTPTARKVAAGGAEKVKFIQVTNLARTLGHIKEHYHVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
A+P+++ G P +V+G+E TGLRP+ + C V IP
Sbjct: 181 ENALPIHKFDFTGTPVCVVMGAEDTGLRPITQSQCDQTVFIP----------------MS 224
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
GN ++SLNVSVA G+ L+
Sbjct: 225 GN------------LQSLNVSVATGMALY 241
>gi|357390367|ref|YP_004905207.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
gi|311896843|dbj|BAJ29251.1| putative rRNA methyltransferase [Kitasatospora setae KM-6054]
Length = 330
Score = 112 bits (280), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 83/253 (32%), Positives = 122/253 (48%), Gaps = 37/253 (14%)
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
ALYVQ+ L +++R + + A G+ + E + L+ + G HQGLVL
Sbjct: 106 ALYVQQ--FLDTDDRVRD-------AFQAANERGVPLMEAPRAQLDQMTGGLNHQGLVLQ 156
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E +L +AD Q +L VALD VTD +NLGA++RSA FGA GVV+ + +A
Sbjct: 157 VPPYEYAHPDDLLEGAADAGQDALIVALDGVTDSRNLGAVVRSAAAFGAHGVVIPERRAA 216
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K SSG+ + + N+ + L S + G V+G + +A + P
Sbjct: 217 GMTAGAWKTSSGAAARLPVARATNLTRALESYQKAGVMVVGLAADGEAEIGDLDALNGPV 276
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V GSEG GL LV +C LVRIP +P E
Sbjct: 277 VIVAGSEGKGLSRLVSETCDLLVRIP--MPGQ--------------------------TE 308
Query: 553 SLNVSVAAGVLLH 565
SLN VAAG++L+
Sbjct: 309 SLNAGVAAGIVLY 321
>gi|25029071|ref|NP_739125.1| hypothetical protein CE2515 [Corynebacterium efficiens YS-314]
gi|259505937|ref|ZP_05748839.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
efficiens YS-314]
gi|23494358|dbj|BAC19325.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259166418|gb|EEW50972.1| TrmH family group 3 RNA methyltransferase [Corynebacterium
efficiens YS-314]
Length = 313
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 134/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A+ ALYV EG + D++ E V ++A + I + E
Sbjct: 69 ELVVGRNPVLECLHARV-PSTALYVAEGAA--------NDERLSESV-RLAADRSIPVLE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+K +L+ + GN HQG+ L P E I +L +A + ++V LD +TDP+NLGA
Sbjct: 119 VNKLELDRMTGNGMHQGIGLAIPPFEYADIHDLLADAAQSPKPGMFVILDNITDPRNLGA 178
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG +GV++ + SA ++ V + S+G+ + + NM + + +NG++V
Sbjct: 179 VIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRTIKEFQKNGYQV 238
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ ++V+GSEG G+ LV +C ++ IP
Sbjct: 239 VGLDAGGDHT-LDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIP------------- 284
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
E + VESLN SVAAGV+L
Sbjct: 285 ----------TEPW-----VESLNASVAAGVVL 302
>gi|380302176|ref|ZP_09851869.1| rRNA methylase, putative, group 3 [Brachybacterium squillarum
M-6-3]
Length = 313
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 36/237 (15%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++A + I E S+ DL+ + + HQG+ L P E +++L I+ D + L
Sbjct: 101 EILRLAGARNLPIAEASRTDLDRMTDHAVHQGVALTIPPYEYADVEDLVQIAQDAFEPPL 160
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD VTDP+NLGAI+RSA FGA GV++ + SA ++ V K ++G+ + + N
Sbjct: 161 LVALDGVTDPRNLGAILRSADAFGAHGVIIPERRSASMTASVWKVAAGAAGRVRVAQVTN 220
Query: 457 MMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
+ + L + G VLG G V+S+ + L +P LV+G+EG GL L +C
Sbjct: 221 LNRALSALKSQGVFVLGLDAEGDVTSRELELGT----EPVALVVGAEGKGLSRLTRETCD 276
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
+V IP G+ ESLN SVAA + L+ + G
Sbjct: 277 QVVSIP-------MGGQ---------------------TESLNASVAAAIALYEISG 305
>gi|357019902|ref|ZP_09082137.1| RNA methyltransferase [Mycobacterium thermoresistibile ATCC 19527]
gi|356479938|gb|EHI13071.1| RNA methyltransferase [Mycobacterium thermoresistibile ATCC 19527]
Length = 314
Score = 112 bits (279), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 132/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV G + D++ E V ++A + GISI E
Sbjct: 72 EIVLGRNPVVECLRAEV-PATALYVALG--------TEADERLTEAV-RLAADAGISILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P + +L + + + +L VALD ++DP+NLGA
Sbjct: 122 VPRHDLDRISANGLHQGIALQVPPYQYAHPDDLLERATTDTEPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F GVV+ + SA ++ V + S+G+ + + N+ + L + A+ G +
Sbjct: 182 IVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKNWADAGLMI 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 242 VGLDAGGDTT-LDELDGTTPLVVVVGSEGKGLSRLVRENCDLVVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 292 -------------------AESLNASVAAGVVL 305
>gi|33240198|ref|NP_875140.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
gi|33237725|gb|AAP99792.1| rRNA methylase [Prochlorococcus marinus subsp. marinus str.
CCMP1375]
Length = 418
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 104/184 (56%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++LK A+ +G+ ++E S L V HQG+ L + E +K L D++
Sbjct: 184 FFQLLKDAKALGVLVEEVSWARLGHVTTGGVHQGIALQTAASETFDLKTLIEGCQSIDES 243
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
+ +ALD +TDPQNLGAI+RSA GA G++L + SA L+G V+K ++G+LE + +
Sbjct: 244 PVLIALDGLTDPQNLGAIVRSAEALGAHGLILPQRRSAGLTGSVAKVAAGALEHLPVARV 303
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L ++G+ ++G + +NEI P +L +GSE GL L R C L
Sbjct: 304 VNLNRSLEELKKSGYTIIGLAGEGDKT-INEITFDGPLVLAIGSEEKGLSLLTRRHCDFL 362
Query: 515 VRIP 518
V+IP
Sbjct: 363 VKIP 366
>gi|336176510|ref|YP_004581885.1| TrmH family RNA methyltransferase [Frankia symbiont of Datisca
glomerata]
gi|334857490|gb|AEH07964.1| RNA methyltransferase, TrmH family, group 3 [Frankia symbiont of
Datisca glomerata]
Length = 409
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 103/184 (55%), Gaps = 3/184 (1%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++ ++A G+++ + ++ DL+ + G+ PHQGL L P +L A E
Sbjct: 193 DEARRLAPRAGVAVADVARGDLDRLCGSAPHQGLALSVPPFRYAHPDDLL-ARAQEAPPG 251
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L VALD VTDP+NLGA++RSA FGA GVV+ + +A ++ K S+G+ + +
Sbjct: 252 LLVALDGVTDPRNLGAVVRSAAAFGAHGVVVPERRAAGVTAAAWKTSAGAAARLPVARAT 311
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHL 514
N+++ L A+ G V+G + + V L+E+ P +LV+GSEG GL LV C
Sbjct: 312 NLVRALTGWAQAGLFVVGLAADGE-VSLDELEMASDPLVLVVGSEGRGLSRLVGERCDLT 370
Query: 515 VRIP 518
VRIP
Sbjct: 371 VRIP 374
>gi|359419680|ref|ZP_09211629.1| putative RNA methyltransferase [Gordonia araii NBRC 100433]
gi|358244410|dbj|GAB09698.1| putative RNA methyltransferase [Gordonia araii NBRC 100433]
Length = 317
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALY+ G+ + D++ E V +MA GISI E
Sbjct: 74 EYVLGRNPVVECLRAGV-PATALYLVTGV--------EADERVTEAV-QMAGAKGISILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++++L+ + N HQG+ L P ++ + Q L VALD +TDP+NLGA
Sbjct: 124 VTRNELDRMSSNGLHQGIGLQVPPYVYAHPDDVMADALASGQPPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G ++
Sbjct: 184 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKDWAKAGAQI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + AV L+E PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 244 VGLD-TEGAVSLDEYDGTGPTVIVVGSEGKGLSRLVRETCDSVLSIP-------MAGD-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVL 307
>gi|159903237|ref|YP_001550581.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9211]
gi|159888413|gb|ABX08627.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9211]
Length = 413
Score = 112 bits (279), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 64/184 (34%), Positives = 108/184 (58%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++LK ++++G+ ++E S L + HQG+ L + + + ++ L + ++
Sbjct: 180 FLQLLKDSKSLGVLVEEVSWARLGYITHGGVHQGIALQTAASKTLDLQTLIDGCSQLGES 239
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
S+ +ALD +TDP N+GAIIRSA GA G+VL + SA L+G V+K ++G+LE +
Sbjct: 240 SVLIALDGLTDPHNVGAIIRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHFPVARV 299
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L+ + G+ V+G + V LNE+ P +LV+GSE GL L R+C L
Sbjct: 300 VNLNRSLIELKDAGYSVIGLAGDGDFV-LNEVDLLGPLVLVIGSEDKGLSVLTRRNCDQL 358
Query: 515 VRIP 518
VR+P
Sbjct: 359 VRVP 362
>gi|379745207|ref|YP_005336028.1| TrmH family RNA methyltransferase [Mycobacterium intracellulare
ATCC 13950]
gi|378797571|gb|AFC41707.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
intracellulare ATCC 13950]
Length = 268
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 132/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A+ +GI+I E
Sbjct: 27 ETVLGRNPVLECLRAGV-PATALYVTLG--------SEADERLTESVSRAAD-LGIAILE 76
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L +A +L VALD ++DP+NLGA
Sbjct: 77 VPRTDLDRMTNNHLHQGIALQVPPYNYAHPDDLVE-AATGSPPALLVALDNISDPRNLGA 135
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 136 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVARATNLTRTLTDWADRGLRV 195
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P ++V+GSEG GL LV ++C +V IP AG
Sbjct: 196 IGLDAGGDTT-LDDLDGTDPIVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAGN-- 245
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 246 -------------------AESLNASVAAGVVLAEI 262
>gi|296268496|ref|YP_003651128.1| TrmH family RNA methyltransferase [Thermobispora bispora DSM 43833]
gi|296091283|gb|ADG87235.1| RNA methyltransferase, TrmH family, group 3 [Thermobispora bispora
DSM 43833]
Length = 322
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/278 (31%), Positives = 132/278 (47%), Gaps = 42/278 (15%)
Query: 292 EGLYGVGPVLAALSAK--TREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
E + G PV+ AL A R Y Y + +++R ++ +K+A + I +
Sbjct: 75 EIIAGRNPVVEALRADIPARVLYVAY-----RIDTDDRVRE-------AIKIAADRDIPM 122
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
E S+ L+ + G HQG+ L+ P E +L + + L VALD VTDP+NL
Sbjct: 123 VEVSRDRLDQLTGGAVHQGIGLEIPPYEYAHPDDLVEAAHQAGEVPLIVALDGVTDPRNL 182
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAI RSA FGA G+V+ ++ S ++ K S+G+L + + +N+ Q L + + G
Sbjct: 183 GAIARSAAAFGAHGIVVPSRRSVGVTSGAWKTSAGTLATLPVARASNLTQTLKAYRKEGL 242
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V+G +K + +P +LV+GSEG GL LV +C L RIP GE
Sbjct: 243 FVVGLDGDAKEEIADNTLLTEPLVLVVGSEGKGLSRLVRETCDMLARIP--------MGE 294
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN VAAG+ L+ +
Sbjct: 295 --------------------RVESLNAGVAAGIALYEI 312
>gi|78212686|ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
gi|78197145|gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
Length = 542
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L + G HQG+ L + E + + L +D +
Sbjct: 253 FLQLLRDAKASGVLVEEVTWARLGQITGGSVHQGIALQTAAAETLDLDSLIEGCSDLGEP 312
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD VTDP NLGA++RSA GA GVV+ + SA L+G +K ++G+LE + +
Sbjct: 313 PLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARV 372
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + G+RV+G + V L ++ P +LV GSE GL + R C L
Sbjct: 373 VNLNRSLEKLKDAGYRVVGLAAEGD-VTLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQL 431
Query: 515 VRIP 518
VRIP
Sbjct: 432 VRIP 435
>gi|338534252|ref|YP_004667586.1| RNA methyltransferase [Myxococcus fulvus HW-1]
gi|337260348|gb|AEI66508.1| RNA methyltransferase [Myxococcus fulvus HW-1]
Length = 281
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 38/274 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PVL AL A+ E LY+ EG + + ++L A GI +++ +
Sbjct: 36 VYGVNPVLEALRARPDEVERLYLVEG---------QLGARAAGELLSRAREYGIRVEKVT 86
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L + HQG+V++ + +++++ + Q L V LD + DP NLGAII
Sbjct: 87 RERLATLADGGVHQGVVVELRGFQYAELEDILEAAKALKQPPLVVVLDGIQDPHNLGAII 146
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA GA GVV+ + ++G V+KAS+G++E + N+ + L E G V
Sbjct: 147 RSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARVVNISRALEELKEAGLWVAA 206
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V +K P+ P LV+G+EG G+R V + C +RIP AG++
Sbjct: 207 ADVDAKE-PMWSARLDGPLALVVGAEGAGVREGVLKHCDFRLRIP-------MAGQVG-- 256
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
SLN SV+AG+LL+ +
Sbjct: 257 -------------------SLNASVSAGILLYEV 271
>gi|290959418|ref|YP_003490600.1| RNA methyltransferase [Streptomyces scabiei 87.22]
gi|260648944|emb|CBG72058.1| putative RNA methyltransferase [Streptomyces scabiei 87.22]
Length = 313
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 96/317 (30%), Positives = 149/317 (47%), Gaps = 44/317 (13%)
Query: 256 KARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG-----EGLYGVGPVLAALSAKTRE 310
K T E ++ ++ K+AA P+ G E + G PV+ AL
Sbjct: 29 KGPTPPAEMRKKHKANRIANAKAKQAARRPAPRGRGGKGTSEMVVGRNPVVEALREGV-P 87
Query: 311 FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLV 370
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLV
Sbjct: 88 ASTLYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLV 139
Query: 371 LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
L P E ++L + DE + L VALD VTDP+NLGA++RS FG GV++ +
Sbjct: 140 LQVPPYEYAHPEDLANAAYDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVLVPERR 199
Query: 431 SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-G 489
+A ++ K S+G+ + C N+ + L + + G V+G + ++ + E+ G
Sbjct: 200 AAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYKKAGVVVVGLAADGES-EIGELEALG 258
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P ++V+GSEG GL LV +C + VRIP +P G A
Sbjct: 259 GPVVIVVGSEGKGLSRLVGETCDYRVRIP--MP-----------------GGA------- 292
Query: 550 AVESLNVSVAAGVLLHH 566
ESLN VAAGV+L+
Sbjct: 293 --ESLNAGVAAGVVLYE 307
>gi|124023282|ref|YP_001017589.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
gi|123963568|gb|ABM78324.1| rRNA methylase [Prochlorococcus marinus str. MIT 9303]
Length = 536
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+VL + E + ++ L A ++
Sbjct: 212 FLQLLREAKSSGVLVEEVTWARLGQLTGGAVHQGIVLQTAAAETLDLQSLIEGCAGLGES 271
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAIIRSA GA GVVL + SA L+G V+K ++G+LE + +
Sbjct: 272 PLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 331
Query: 455 NNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
N+ + L + + G+RV+G G ++ V L+ P ++V GSE G+ L R
Sbjct: 332 VNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD-----GPLVIVTGSEKQGISLLTRRH 386
Query: 511 CTHLVRIP 518
C LVR+P
Sbjct: 387 CDQLVRVP 394
>gi|333992510|ref|YP_004525124.1| tRNA/rRNA methyltransferase [Mycobacterium sp. JDM601]
gi|333488478|gb|AEF37870.1| tRNA/rRNA methyltransferase [Mycobacterium sp. JDM601]
Length = 313
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ G+ I E
Sbjct: 72 ETVLGRNPVLECLRAGI-PATALYVALG--------AEADERLTESVTRAADS-GLPILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRSDLDKMTTNGLHQGIALQVPPYNYAHPDDLLAAARKDVAPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ Q L A+ G +V
Sbjct: 182 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVGRAPNLTQTLKGWADRGLQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V ++E+ P +LV+GSEG GL LV ++C +V IP P
Sbjct: 242 VGLDAGGDTV-VDELDGTGPMVLVVGSEGKGLSRLVRQNCDAIVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 292 -------------------TESLNASVAAGVVLAEI 308
>gi|311741771|ref|ZP_07715582.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
gi|311314777|gb|EFQ84683.1| RNA methyltransferase [Aeromicrobium marinum DSM 15272]
Length = 314
Score = 112 bits (279), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/313 (29%), Positives = 150/313 (47%), Gaps = 50/313 (15%)
Query: 260 EKPEYQRWNRQENSGRTTWKEAA-PSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQE 318
E+P ++ + + +N+ T +EAA P V E + G VL L A T + LYV E
Sbjct: 42 ERPNHKVY-KMKNA--ATKREAARPRRKTGDVAEWVAGRNSVLELLKA-TVPIHGLYVAE 97
Query: 319 GLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEM 378
G ++D++ ++ K+A + +S+ E + +L+ + G HQG+ + +
Sbjct: 98 G--------TERDER-MREIFKLAADQHVSLLEIGRVELDKLTGGAVHQGIAAKLNAYDY 148
Query: 379 VKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVV 438
++L ++A+ + +L V LD VTDP+NLGA+IRSA FGA GVV+ + +A ++
Sbjct: 149 ADPRDLLALAAERGEPALIVMLDGVTDPRNLGAVIRSASGFGAHGVVIPERRAAQITAAA 208
Query: 439 SKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ----PTIL 494
K S+G+ + + N+ + L E G V+G + E+P Q P ++
Sbjct: 209 WKTSAGAAARVPVARVTNLTRTLKELQEEGLMVIGLAADGDV----ELPSSQMLDGPVVV 264
Query: 495 VLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESL 554
V+GSEG GL LV +C LV IP +ESL
Sbjct: 265 VIGSEGKGLSRLVGETCDELVSIP----------------------------MSTGLESL 296
Query: 555 NVSVAAGVLLHHL 567
N VAAG+ L+ +
Sbjct: 297 NAGVAAGIALYAI 309
>gi|406028825|ref|YP_006727716.1| hypothetical protein MIP_00916 [Mycobacterium indicus pranii MTCC
9506]
gi|405127372|gb|AFS12627.1| Hypothetical protein MIP_00916 [Mycobacterium indicus pranii MTCC
9506]
Length = 268
Score = 111 bits (278), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 132/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A+ +GI+I E
Sbjct: 27 ETVLGRNPVLECLRAGV-PATALYVALG--------SEADERLTESVSRAAD-LGIAILE 76
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L +A +L VALD ++DP+NLGA
Sbjct: 77 VPRTDLDRMTNNHLHQGIALQVPPYNYAHPDDLVE-AATGSPPALLVALDNISDPRNLGA 135
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 136 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVARATNLTRTLTDWADRGLRV 195
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P ++V+GSEG GL LV ++C +V IP AG
Sbjct: 196 IGLDAGGDTT-LDDLDGTDPIVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAGN-- 245
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 246 -------------------AESLNASVAAGVVLAEI 262
>gi|397689376|ref|YP_006526630.1| RNA methyltransferase, TrmH family, group 3 [Melioribacter roseus
P3M]
gi|395810868|gb|AFN73617.1| RNA methyltransferase, TrmH family, group 3 [Melioribacter roseus
P3M]
Length = 247
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 44/278 (15%)
Query: 292 EGLYGVGPVLAALSA--KTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
E +YG PVL A++A Y Y Q G ++S ++ A+ + I
Sbjct: 2 EIIYGRKPVLEAINAGEDIEVIYVAYGQRGEAIS-------------RIFTAAKKNNLKI 48
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
+ S + GN QG++ S + + +EL S + Q L + LD + D NL
Sbjct: 49 TQLSSKKFKQLAGNLNAQGVIAIKSVYKFLDYRELIDNSM-KSQEPLILILDTLQDTHNL 107
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GA++R+A G GV+L + NSAP++ V+K S+G+L +++ N+MQ + E G+
Sbjct: 108 GAVLRTAECAGVDGVILTSNNSAPVNETVAKISAGALSHLKISRVANLMQPIKYLKEKGF 167
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
++G ++ K+V + I P L++G+E G+R LV C +V+IP G+
Sbjct: 168 WIVGAHLTEKSVNYDTIDYSGPIALIMGNEEKGIRRLVAEECDFIVKIP-------MKGK 220
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ID SLNVSVA GV+L +
Sbjct: 221 ID---------------------SLNVSVATGVILFEI 237
>gi|257453526|ref|ZP_05618816.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
aerosaccus SK60]
gi|257448984|gb|EEV23937.1| RNA methyltransferase, TrmH family, group 3 [Enhydrobacter
aerosaccus SK60]
Length = 258
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 137/276 (49%), Gaps = 37/276 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
YG+ V + L + + L++Q+G KK+D + ++A+ GI+I+ ++
Sbjct: 7 FYGIHAVQSILQHRGIDGLTLFIQDG--------KKQDDATVANITELAQTYGIAIQISA 58
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEM---VKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K L + + HQG+VL A P E+ +K L E + L + LD++TDP NLG
Sbjct: 59 KDKLTKLAESPQHQGVVLQARPAELQDEADLKYLVDKHQTERKPLLLLVLDQITDPNNLG 118
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A +R+A G S V++ +S+ ++ V+K + G++ELM N+ + L + G
Sbjct: 119 ACLRTAVAMGVSAVIIPKNHSSSITPAVAKVAVGAVELMPFIQVTNLARTLTDIKKQGVF 178
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V G ++ A P+ + +V+GSEG G+R L +C LV IP +P
Sbjct: 179 VFGTALDDTAKPVQDCDLTGDVAIVMGSEGDGIRRLTADTCDQLVYIP--MP-------- 228
Query: 531 DDVDADGN-HGSAEQFQSFMAVESLNVSVAAGVLLH 565
GN HG ++SLNVSVA G++L+
Sbjct: 229 ------GNEHGQ---------IQSLNVSVATGMVLY 249
>gi|254801702|sp|B8ZUB0.2|Y324_MYCLB RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MLBr00324
gi|254801703|sp|Q9CCW4.2|Y324_MYCLE RecName: Full=Uncharacterized tRNA/rRNA methyltransferase ML0324
Length = 309
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + DK+ E V++ A+ +G++I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALGTEV--------DKRLTESVMRAAD-VGVAILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + N HQG+ L P V +L + D A L VALD ++DP+NLGA
Sbjct: 118 VPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F G+++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P +V+GSEG GL LV SC +V IP AG+
Sbjct: 237 IGLDHDGDTA-LDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIP-------MAGQ-- 286
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVA GV+L
Sbjct: 287 -------------------VESLNASVAVGVVL 300
>gi|33862923|ref|NP_894483.1| tRNA/rRNA methyltransferase SpoU [Prochlorococcus marinus str. MIT
9313]
gi|33634840|emb|CAE20825.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus str. MIT 9313]
Length = 535
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 108/188 (57%), Gaps = 9/188 (4%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+VL + E + ++ L A ++
Sbjct: 211 FLQLLREAKSSGVLVEEVTWARLGQLTGGAVHQGIVLQTAAAETLDLQSLIEGCAGLGES 270
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAIIRSA GA GVVL + SA L+G V+K ++G+LE + +
Sbjct: 271 PLLLALDGLTDPHNLGAIIRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 330
Query: 455 NNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
N+ + L + + G+RV+G G ++ V L+ P ++V GSE G+ L R
Sbjct: 331 VNLNRSLEALKQAGYRVIGLAEEGDITLPDVDLD-----GPLVIVTGSEKQGISLLTRRH 385
Query: 511 CTHLVRIP 518
C LVR+P
Sbjct: 386 CDQLVRVP 393
>gi|33865563|ref|NP_897122.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
gi|33632732|emb|CAE07544.1| possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 8102]
Length = 480
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L + G HQG+ L + E + ++ L +D +
Sbjct: 209 FLQLLRDAKASGVLVEEVTWARLGQITGGSVHQGIALQTAAAETIDLESLIEGCSDLGEP 268
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD VTDP NLGA++RSA GA GVVL + SA L+G +K ++G+LE + +
Sbjct: 269 PLLLALDGVTDPHNLGAVVRSAEAMGAHGVVLPQRRSAGLTGSAAKVAAGALEHLPVARV 328
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + G+RV+ G V L ++ P +LV GSE GL L R C L
Sbjct: 329 VNLNRSLEKLKDAGYRVI-GLAGEGDVTLPDVDLSGPLVLVTGSEDQGLSLLTRRHCDQL 387
Query: 515 VRIP 518
VRIP
Sbjct: 388 VRIP 391
>gi|306836882|ref|ZP_07469838.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
gi|304567254|gb|EFM42863.1| RNA methyltransferase [Corynebacterium accolens ATCC 49726]
Length = 316
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 40/278 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK LY+ G + DK+ E V M I
Sbjct: 66 KETAEMVVGRNPVIECLHAKV-PATTLYIAAGT--------RNDKRLSEAV-SMCNTRNI 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H+++ + GN HQG+ L P + +++L +A+ + ++V LD +TDP+
Sbjct: 116 PIIEVQRHEMDRMTGNGMHQGIGLQIPPYKYAAVEDLIANAAENPRPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + + +N
Sbjct: 176 NLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAARLPVARATNITRTVKEFQKN 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++V+G L+ G P ++V+GSEG G+ LV +C L+ IP
Sbjct: 236 GYQVVGLDAGGDHT-LDTYEGGTDPVVIVIGSEGKGISRLVSETCDVLMSIP-------- 286
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ VESLN SVAAG +L
Sbjct: 287 ------------------MTGW--VESLNASVAAGSVL 304
>gi|254822714|ref|ZP_05227715.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
intracellulare ATCC 13950]
gi|379752496|ref|YP_005341168.1| TrmH family RNA methyltransferase [Mycobacterium intracellulare
MOTT-02]
gi|379759936|ref|YP_005346333.1| TrmH family RNA methyltransferase [Mycobacterium intracellulare
MOTT-64]
gi|387873878|ref|YP_006304182.1| TrmH family RNA methyltransferase [Mycobacterium sp. MOTT36Y]
gi|443308798|ref|ZP_21038584.1| TrmH family RNA methyltransferase [Mycobacterium sp. H4Y]
gi|378802712|gb|AFC46847.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
intracellulare MOTT-02]
gi|378807878|gb|AFC52012.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
intracellulare MOTT-64]
gi|386787336|gb|AFJ33455.1| TrmH family RNA methyltransferase [Mycobacterium sp. MOTT36Y]
gi|442763914|gb|ELR81913.1| TrmH family RNA methyltransferase [Mycobacterium sp. H4Y]
Length = 310
Score = 111 bits (278), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 132/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A+ +GI+I E
Sbjct: 69 ETVLGRNPVLECLRAGV-PATALYVALG--------SEADERLTESVSRAAD-LGIAILE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L +A +L VALD ++DP+NLGA
Sbjct: 119 VPRTDLDRMTNNHLHQGIALQVPPYNYAHPDDLVE-AATGSPPALLVALDNISDPRNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 178 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARVPVARATNLTRTLTDWADRGLRV 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P ++V+GSEG GL LV ++C +V IP AG
Sbjct: 238 IGLDAGGDTT-LDDLDGTDPIVVVVGSEGKGLSRLVRQNCDEVVSIP-------MAGN-- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 288 -------------------AESLNASVAAGVVLAEI 304
>gi|404213484|ref|YP_006667678.1| rRNA methylase [Gordonia sp. KTR9]
gi|403644283|gb|AFR47523.1| rRNA methylase [Gordonia sp. KTR9]
Length = 316
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 98/318 (30%), Positives = 151/318 (47%), Gaps = 44/318 (13%)
Query: 252 RRDVKARTEKPEY--QRWNRQENSGRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSA 306
RR ++AR P+ + ++ + K A P+ EG + G PV+ L A
Sbjct: 29 RRGLEARGATPKAVDRPYHPAHKRAKAATKSATGRGGPRARDEGPEYVLGRNPVVECLRA 88
Query: 307 KTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPH 366
ALY+ ++N+ + D++ E V K+A + ISI E K +L+ + N H
Sbjct: 89 GV-PATALYI------ATNS--EPDERVAEAV-KIAGDSAISILEVGKPELDRLSTNGMH 138
Query: 367 QGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVL 426
QG+ L + +L + L VALD +TDP+NLGA+IRS FG GVV+
Sbjct: 139 QGIALQVPEYQYTHPDDLMAEAKASGTPPLLVALDNITDPRNLGAVIRSVAAFGGHGVVI 198
Query: 427 CAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEI 486
A+ SA ++ V + S+G+ + + N+ + L A+ G +++G V L++
Sbjct: 199 PARRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWADQGAQLVGLDADGD-VTLDDY 257
Query: 487 PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQ 546
PT++V+GSEG GL LV SC ++ IP AG+
Sbjct: 258 DGSGPTVIVVGSEGKGLSRLVRESCDSILSIP-------MAGD----------------- 293
Query: 547 SFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 ----VESLNASVAAGVVL 307
>gi|359410052|ref|ZP_09202517.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp.
DL-VIII]
gi|357168936|gb|EHI97110.1| RNA methyltransferase, TrmH family, group 3 [Clostridium sp.
DL-VIII]
Length = 289
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/312 (25%), Positives = 148/312 (47%), Gaps = 40/312 (12%)
Query: 257 ARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYV 316
+++EK E + + N + + K+ +T + + + G V+ AL R LY+
Sbjct: 13 SKSEKKEDKFEVKNGNDNKKSNKDEKGNTEVQEREDIVIGRNAVIEALKG-DRTIETLYI 71
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPL 376
G S N ++ +A+ I +KE K L+++ G HQG++ SP
Sbjct: 72 ANGKLEGSIN----------AIVSLAKEKRIILKEVDKRKLDLMCGGENHQGVIAKVSPY 121
Query: 377 EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG 436
+ ++ ++ ++ + ++A V LDEV DP NLG+I+R+A FG G+++ + SA +S
Sbjct: 122 KYSEVSDILDLAEERNEAPFIVILDEVEDPHNLGSIVRTAELFGVHGIIIPKRRSASVST 181
Query: 437 VVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVL 496
V K+S G++E +++ N+ + + G V G + +K +I P +++
Sbjct: 182 TVYKSSVGAIEHVKIAKVTNLNSTIEELKQKGIWVYGADIRAKEYSY-QIDFSGPCAVII 240
Query: 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNV 556
G+EG G+ L + C L++IP G+I+ SLN
Sbjct: 241 GNEGRGISKLTVQKCDKLIKIP-------MVGKIN---------------------SLNA 272
Query: 557 SVAAGVLLHHLV 568
SVA G++++ ++
Sbjct: 273 SVAGGIIMYEVL 284
>gi|409356861|ref|ZP_11235248.1| TrmH family RNA methyltransferase [Dietzia alimentaria 72]
Length = 322
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 99/348 (28%), Positives = 157/348 (45%), Gaps = 53/348 (15%)
Query: 226 QGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSG---------RT 276
+G + G + V S +RR R + E Y +R+ S R
Sbjct: 8 RGAIRKTGTKKGQVVGSGGQRRRGLEARGATPKAEDRTYHAAHRKAKSADRKAQSVQQRR 67
Query: 277 TWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYE 336
+ E P++V G PV+ L A AL+V G D++ E
Sbjct: 68 RYAEKKADG-PELV----VGRNPVVECLRAGV-PATALFVAVG--------ADNDERLTE 113
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
V + A + GISI E ++DL+ + N HQG+ L E +L + + +L
Sbjct: 114 AV-RFAADKGISILEVPRNDLDRMTSNGMHQGIGLQVPAYEYADPNDLIESAMHSSRPAL 172
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N
Sbjct: 173 LVALDNITDPRNLGAVIRSTAAFGGHGVLIPERRSASITAVAWRTSAGAAARLPVARATN 232
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + L+ A++G +++G V L++ PT++V+GSEG GL LV +C ++
Sbjct: 233 LNRTLLDWAKSGAQLVGLDADGD-VSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILS 291
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+P + +G VESLN SVAAGV+L
Sbjct: 292 VP------IASG----------------------VESLNASVAAGVVL 311
>gi|260436245|ref|ZP_05790215.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
sp. WH 8109]
gi|260414119|gb|EEX07415.1| putative RNA methyltransferase TrmH family, group 3 [Synechococcus
sp. WH 8109]
Length = 515
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L + G HQG+ L + E + + L +D +
Sbjct: 220 FLQLLRDAKASGVLVEEVTWARLGQITGGSVHQGIALQTAAAETLDLDSLIEGCSDLGEP 279
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD VTDP NLGA++RSA GA GVV+ + SA L+G +K ++G+LE + +
Sbjct: 280 PLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAGLTGSAAKVAAGALEHLPVARV 339
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + G+RV+G + V L ++ P +LV GSE GL + R C L
Sbjct: 340 VNLNRSLEKLKDAGYRVVGLAAEGD-VTLTDVDLSGPMVLVTGSEDQGLSLMTRRHCDQL 398
Query: 515 VRIP 518
VRIP
Sbjct: 399 VRIP 402
>gi|254973712|ref|ZP_05270184.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-66c26]
gi|255091102|ref|ZP_05320580.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CIP
107932]
gi|255099214|ref|ZP_05328191.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-63q42]
gi|255304997|ref|ZP_05349169.1| putative tRNA/rRNA methyltransferase [Clostridium difficile ATCC
43255]
gi|255312757|ref|ZP_05354340.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-76w55]
gi|255515517|ref|ZP_05383193.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-97b34]
gi|255648610|ref|ZP_05395512.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-37x79]
gi|306518733|ref|ZP_07405080.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-32g58]
gi|384359380|ref|YP_006197232.1| tRNA/rRNA methyltransferase [Clostridium difficile BI1]
Length = 245
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 34/234 (14%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+K++ MA++ I I+ KH L+ V + HQG++ AS + ++ EL ++ ++D+
Sbjct: 35 KKIIGMAKDKNIIIQYVDKHKLDEVSTSHSHQGVIAYASEYKYYELDELIDLAKNKDEDP 94
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+TDP NLG+IIR+A GA GV++ + S ++ VV+KAS+G++E M +
Sbjct: 95 FFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVT 154
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N++ + E G + + + + P +V+GSEG G+ LV+++C +V
Sbjct: 155 NIVNTIKRLKEEGLWIAAADMDGETFYKQNLT--GPLGVVIGSEGFGISRLVKQNCDFIV 212
Query: 516 RIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P GN V SLN SVA G+LL+ +
Sbjct: 213 KMPMIGN------------------------------VTSLNASVAGGILLYEI 236
>gi|366999314|ref|XP_003684393.1| hypothetical protein TPHA_0B02870 [Tetrapisispora phaffii CBS 4417]
gi|357522689|emb|CCE61959.1| hypothetical protein TPHA_0B02870 [Tetrapisispora phaffii CBS 4417]
Length = 414
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/331 (26%), Positives = 141/331 (42%), Gaps = 85/331 (25%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG ++AAL+ RE++ G + +DK E + +
Sbjct: 114 EYIYGRNTIVAALNNPKREYFTSLYYYGSAFEELPTDIRDK---------CEELNVKRIA 164
Query: 352 TSKHDLNMVVGNRPHQGLVLDA---SPLEMVKIKELD-------------PISADEDQAS 395
KH LN++ N H LVL+ P E+ + E D P+ ++D+ +
Sbjct: 165 VDKHRLNILTNNGVHNNLVLETKRLQPPEVTYLGECDEERSEAQLVCNEEPVFTNDDEET 224
Query: 396 ----------------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
L + LDE++DP N+G+IIRSAYF G +++ KN +
Sbjct: 225 TRSFDVQTMKYLKDEKRNKKFPLGLYLDEISDPHNIGSIIRSAYFLGVDFILMSRKNCSA 284
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS--------------- 478
L+ V+K SSG++ELM + Y + M F S +NGW + ++
Sbjct: 285 LTPAVNKTSSGAIELMPIYYVDKPMNFFEESRKNGWSFVSSYLTDMKGSTKKHIQKEQIL 344
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRP-LVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+ L I P ILV+GSE G+R L+ RS V+IP D D
Sbjct: 345 ELEDLGGICNEMPVILVVGSESKGIRTNLIMRS-DFFVQIPFGRSTD-----------DS 392
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
N ++SLNV VAA +L+++++
Sbjct: 393 NQ----------TIDSLNVGVAAALLINNII 413
>gi|320095424|ref|ZP_08027101.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
gi|319977617|gb|EFW09283.1| RNA methyltransferase [Actinomyces sp. oral taxon 178 str. F0338]
Length = 325
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 37/242 (15%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A +MG + E ++ DL++ HQG+ ++ E + +L S
Sbjct: 110 KDDR-VEEVIRLASSMGAPVFEVTRRDLDVATDGASHQGVAIEVRGYEYTPVDDLIAGSV 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FG GV++ + SA ++ K S+G+ +
Sbjct: 169 QQVGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVTTAAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+++ L G+ V+G G + +PL + P +LV G+EGTGL
Sbjct: 229 PVARATNLVRALEDCKRAGFFVVGLDGGGDAPLRGLPLAD----GPLVLVAGAEGTGLSR 284
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV ++C +V IP + AVESLN +VA G+ L+
Sbjct: 285 LVRQTCDQIVSIPIS----------------------------SAVESLNAAVATGIALY 316
Query: 566 HL 567
+
Sbjct: 317 EV 318
>gi|227502089|ref|ZP_03932138.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
gi|227077148|gb|EEI15111.1| possible tRNA/rRNA methyltransferase [Corynebacterium accolens ATCC
49725]
Length = 316
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 131/278 (47%), Gaps = 40/278 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK LY+ G + DK+ E V M I
Sbjct: 66 KETAEMVVGRNPVIECLHAKV-PATTLYIAAGT--------RNDKRLSEAV-SMCNTRNI 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H+++ + GN HQG+ L P + +++L +A+ + ++V LD +TDP+
Sbjct: 116 PIIEVQRHEMDRMTGNGMHQGIGLQIPPYKYAAVEDLIANAAENPRPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + + +N
Sbjct: 176 NLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAARLPVARATNITRTVKEFQKN 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++V+G L+ G P ++V+GSEG G+ LV +C L+ IP
Sbjct: 236 GYQVVGLDAGGDHT-LDTYEGGTDPVVIVIGSEGKGISRLVSETCDVLMSIP-------- 286
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ VESLN SVAAG +L
Sbjct: 287 ------------------MTGW--VESLNASVAAGSVL 304
>gi|229494432|ref|ZP_04388195.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
erythropolis SK121]
gi|453067495|ref|ZP_21970782.1| RNA methyltransferase [Rhodococcus qingshengii BKS 20-40]
gi|229318794|gb|EEN84652.1| RNA methyltransferase, TrmH family, group 3 [Rhodococcus
erythropolis SK121]
gi|452766786|gb|EME25029.1| RNA methyltransferase [Rhodococcus qingshengii BKS 20-40]
Length = 323
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A AL+V G S++R K+ +++A + GISI E
Sbjct: 80 ETVLGRNPVVECLRAGV-PATALWVAVGTE--SDDRLKES-------VQLAADAGISILE 129
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + + L VALD +TDP+NLGA
Sbjct: 130 VPRTDLDRLSANGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGA 189
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RS FG GVV+ + SA +S V + S+G+ + + N+ + L A G +V
Sbjct: 190 VVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQV 249
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L++ P ++V+GSEG GL LV +C ++ IP P
Sbjct: 250 VGLDAEGDTT-LDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGP--------- 299
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 300 -------------------VESLNASVAAGVVLADI 316
>gi|88855741|ref|ZP_01130404.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
PHSC20C1]
gi|88815065|gb|EAR24924.1| tRNA/rRNA methyltransferase protein [marine actinobacterium
PHSC20C1]
Length = 345
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 133/266 (50%), Gaps = 30/266 (11%)
Query: 259 TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQE 318
T+ P+ QR R S K A S E + G VL AL AK + LY+
Sbjct: 72 TDAPQQQRSTRPAQS--RVAKSADES-------EMVTGRNSVLEALRAKI-PAHTLYM-- 119
Query: 319 GLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVG-NRPHQGLVLDASPLE 377
+ ++R K+ +LK+A + GI++ E + +L+ + G + HQGL L P E
Sbjct: 120 ATRIEYDDRVKE-------ILKLATSRGIAVLEVMRPELDRLAGFDSVHQGLALKVPPYE 172
Query: 378 MVKIKEL-DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG 436
EL D + A Q L VALD +TDP+NLGAI+RS FG GV++ + S ++
Sbjct: 173 YAHPMELLDKVEA-RGQVPLLVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTA 231
Query: 437 VVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPT 492
K S+G+ + NN+ Q + + G VLG G VS ++PL + +P
Sbjct: 232 SAWKTSAGAAARTPVAMANNLTQMIKEYKKRGVFVLGLDGDGDVSLPSLPLAK----EPV 287
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIP 518
++V+GSEG GL LV +C +V IP
Sbjct: 288 LIVVGSEGKGLSRLVTENCDAIVSIP 313
>gi|441512839|ref|ZP_20994672.1| putative RNA methyltransferase [Gordonia amicalis NBRC 100051]
gi|441452214|dbj|GAC52633.1| putative RNA methyltransferase [Gordonia amicalis NBRC 100051]
Length = 316
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 115/228 (50%), Gaps = 29/228 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+ +K+A + ISI E K +L+ + N HQG+ L E +L + L
Sbjct: 109 EAVKIAGDQAISILEVGKPELDRLSTNGMHQGIALQVPEYEYTHPDDLMADAKASGTPPL 168
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGA+IRS FG GVV+ A+ SA ++ V + S+G+ + + N
Sbjct: 169 LVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATN 228
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + L A++G +++G V L++ PT++V+GSEG GL LV SC ++
Sbjct: 229 LTRTLKDWADSGAQLVGLDAGGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRESCDSILS 287
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
IP AGE VESLN SVAAGV+L
Sbjct: 288 IP-------MAGE---------------------VESLNASVAAGVVL 307
>gi|325674995|ref|ZP_08154682.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
gi|325554581|gb|EGD24256.1| RNA methyltransferase [Rhodococcus equi ATCC 33707]
Length = 321
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 131/281 (46%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G +++R K+ ++ A + G
Sbjct: 78 PEMV----LGRNPVVECLRAGV-PATALYVAVGAE--TDDRLKES-------VQRAADAG 123
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E + DL+ + N HQG+ L P +L + + +L VALD +TDP
Sbjct: 124 ISILEVPRTDLDRMSANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNITDP 183
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA++RS FG GVV+ + SA ++ V + S+G+ + + N+ + L
Sbjct: 184 RNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQS 243
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G +V+G L+ P ++V+GSEG GL LV +C ++ IP
Sbjct: 244 KGVQVVGLDAGGD-TSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIP-------M 295
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AGE VESLN SVAAGV+L +
Sbjct: 296 AGE---------------------VESLNASVAAGVVLSEI 315
>gi|319948866|ref|ZP_08022979.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
gi|319437468|gb|EFV92475.1| tRNA/rRNA methyltransferase [Dietzia cinnamea P4]
Length = 322
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G D++ E V +A GISI E
Sbjct: 78 EYVVGRNPVLECLRAGV-PATALYVAIG--------SDADERLTEAV-HLAAGKGISILE 127
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ +V N HQG+ L P + +L ++ + +L VALD +TD +NLGA
Sbjct: 128 VPRTDLDRMVSNGMHQGVGLQVPPYQYTDPADLLDMAMGSSEPALLVALDNITDTRNLGA 187
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L+ A+ G ++
Sbjct: 188 VIRSVAAFGGHGVLIPERRSASITAVAWRTSAGAAARLPVARATNLNRTLLDWAKAGVQL 247
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP A E
Sbjct: 248 VGLDAEGD-VSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIP-------IASE-- 297
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 298 -------------------VESLNASVAAGVVL 311
>gi|126697621|ref|YP_001086518.1| tRNA/rRNA methyltransferase, TrmH family, group3 [Clostridium
difficile 630]
gi|260681827|ref|YP_003213112.1| tRNA/rRNA methyltransferase [Clostridium difficile CD196]
gi|260685425|ref|YP_003216558.1| tRNA/rRNA methyltransferase [Clostridium difficile R20291]
gi|423080648|ref|ZP_17069267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
002-P50-2011]
gi|423085095|ref|ZP_17073552.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
050-P50-2011]
gi|423089337|ref|ZP_17077697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
70-100-2010]
gi|115249058|emb|CAJ66869.1| putative tRNA/rRNA methyltransferase, TrmH family, group3
[Clostridium difficile 630]
gi|260207990|emb|CBA60152.1| putative tRNA/rRNA methyltransferase [Clostridium difficile CD196]
gi|260211441|emb|CBE01546.1| putative tRNA/rRNA methyltransferase [Clostridium difficile R20291]
gi|357550743|gb|EHJ32552.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
050-P50-2011]
gi|357552712|gb|EHJ34479.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
002-P50-2011]
gi|357558273|gb|EHJ39772.1| RNA methyltransferase, TrmH family, group 3 [Clostridium difficile
70-100-2010]
Length = 248
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 122/234 (52%), Gaps = 34/234 (14%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+K++ MA++ I I+ KH L+ V + HQG++ AS + ++ EL ++ ++D+
Sbjct: 38 KKIIGMAKDKNIIIQYVDKHKLDEVSTSHSHQGVIAYASEYKYYELDELIDLAKNKDEDP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+TDP NLG+IIR+A GA GV++ + S ++ VV+KAS+G++E M +
Sbjct: 98 FFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N++ + E G + + + + P +V+GSEG G+ LV+++C +V
Sbjct: 158 NIVNTIKRLKEEGLWIAAADMDGETFYKQNLT--GPLGVVIGSEGFGISRLVKQNCDFIV 215
Query: 516 RIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P GN V SLN SVA G+LL+ +
Sbjct: 216 KMPMIGN------------------------------VTSLNASVAGGILLYEI 239
>gi|386774016|ref|ZP_10096394.1| rRNA methylase, putative, group 3 [Brachybacterium
paraconglomeratum LC44]
Length = 320
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 77/237 (32%), Positives = 118/237 (49%), Gaps = 36/237 (15%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++++A + + E ++ DL+ + HQG+ L P E ++ EL I+AD + L
Sbjct: 108 EIMRLAAARALPVVEATRTDLDRMTDQSVHQGVALTIPPYEYAEVDELLEIAADRFEPPL 167
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGAI+RSA FGA GV+L + S ++ V K ++G+ + + N
Sbjct: 168 LVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQVTN 227
Query: 457 MMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
+ + L + E VLG G V+S+ + L QPT LV+G+EG GL L +
Sbjct: 228 LNRTLAALKEQDVFVLGLDADGDVTSRELELGT----QPTALVVGAEGKGLSRLARETSD 283
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
+V IP AG ESLN SVAA + L+ + G
Sbjct: 284 QVVSIP-------MAGR---------------------SESLNASVAAAIALYEISG 312
>gi|312138101|ref|YP_004005437.1| tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
gi|311887440|emb|CBH46752.1| putative tRNA/rRNA methyltransferase [Rhodococcus equi 103S]
Length = 322
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/281 (31%), Positives = 131/281 (46%), Gaps = 43/281 (15%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P+MV G PV+ L A ALYV G +++R K+ ++ A + G
Sbjct: 79 PEMV----LGRNPVVECLRAGV-PATALYVAVGAE--TDDRLKES-------VQRAADAG 124
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
ISI E + DL+ + N HQG+ L P +L + + +L VALD +TDP
Sbjct: 125 ISILEVPRTDLDRMSANGMHQGIALQVPPYRYAHPDDLLTAARSRQEPALLVALDNITDP 184
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA++RS FG GVV+ + SA ++ V + S+G+ + + N+ + L
Sbjct: 185 RNLGAVVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQS 244
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G +V+G L+ P ++V+GSEG GL LV +C ++ IP
Sbjct: 245 KGVQVVGLDAGGD-TSLDNYEGTGPVVIVVGSEGKGLSRLVRETCDSILSIP-------M 296
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AGE VESLN SVAAGV+L +
Sbjct: 297 AGE---------------------VESLNASVAAGVVLSEI 316
>gi|358011651|ref|ZP_09143461.1| tRNA/rRNA methyltransferase [Acinetobacter sp. P8-3-8]
Length = 250
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 132/278 (47%), Gaps = 38/278 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +++L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQRILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V L ++ K+LD I + L +ALD +TDP NLGA IR+A
Sbjct: 62 KLAGQPFHQGVVAAVRALPVLNEKDLDQILESTNH-PLLLALDHITDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN-GWRVLGGSVS 477
G V++ +A L+ K ++G E ++ N+ + L +N RV+G +
Sbjct: 121 MGVEAVIVPRDRAATLTPTARKVAAGGAEKVKFIQVTNLARTLGHIKDNFNVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+P+ + G +V+G+E TGLRP+ + C V IP
Sbjct: 181 EKALPIQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVFIP----------------MS 224
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
GN ++SLNVSVA G+ L+ + SN
Sbjct: 225 GN------------LQSLNVSVATGMALYEACRQRQSN 250
>gi|148239400|ref|YP_001224787.1| tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
gi|147847939|emb|CAK23490.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. WH 7803]
Length = 456
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+ L + + + + +L A +A
Sbjct: 192 FMQLLRDAKSSGVLVEEVTWARLAQMTGGAVHQGIALQTAAADTLDLADLIEGCAALQEA 251
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAI+RSA GA GVVL + SA L+G V+K ++G+LE + +
Sbjct: 252 PLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 311
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + + G+RV+G + L E P ++V GSEG GL L R C L
Sbjct: 312 VNLNRSLETLKDAGYRVVGLAEEGDQT-LEEADLEGPLVVVTGSEGQGLSMLTRRHCDQL 370
Query: 515 VRIP 518
+RIP
Sbjct: 371 IRIP 374
>gi|302535870|ref|ZP_07288212.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
gi|302444765|gb|EFL16581.1| tRNA/rRNA methyltransferase [Streptomyces sp. C]
Length = 323
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 132/280 (47%), Gaps = 39/280 (13%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
PK E + G PV AL LYVQ+ N+ + +D LK+A G
Sbjct: 70 PKGTSEMVVGRNPVFEALRDGV-PATTLYVQQ---FIDNDERVRD------ALKLAGERG 119
Query: 347 -ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I++ E + +L+ + HQGLVL P E ++L + D + +L VALD VTD
Sbjct: 120 NINLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLLDAAHDNGEDALIVALDGVTD 179
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+NLGAI+RS FG GVV+ + +A ++ K S+G+ + N+ + L
Sbjct: 180 PRNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTSAGTAARTPVSRVTNLTRALQDYK 239
Query: 466 ENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
+ G V+G + + G P ++V+GSEG GL LV +C +LVRIP +P
Sbjct: 240 KAGITVVGLAAEGTHEVQDLDALGGPVVIVVGSEGKGLGRLVGENCDYLVRIP--MP--- 294
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
G A ESLN VAAGV+L+
Sbjct: 295 --------------GGA---------ESLNAGVAAGVVLY 311
>gi|15827088|ref|NP_301351.1| methyltransferase [Mycobacterium leprae TN]
gi|221229566|ref|YP_002502982.1| methyltransferase [Mycobacterium leprae Br4923]
gi|13092636|emb|CAC29832.1| putative methyltransferase [Mycobacterium leprae]
gi|219932673|emb|CAR70417.1| putative methyltransferase [Mycobacterium leprae Br4923]
Length = 278
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + DK+ E V++ A+ +G++I E
Sbjct: 37 ETVLGRNPVLECLRAGV-PATALYVALGTEV--------DKRLTESVMRAAD-VGVAILE 86
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + N HQG+ L P V +L + D A L VALD ++DP+NLGA
Sbjct: 87 VPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPA-LLVALDNISDPRNLGA 145
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F G+++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 146 IVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRV 205
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P +V+GSEG GL LV SC +V IP AG+
Sbjct: 206 IGLDHDGDTA-LDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIP-------MAGQ-- 255
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVA GV+L
Sbjct: 256 -------------------VESLNASVAVGVVL 269
>gi|383830051|ref|ZP_09985140.1| rRNA methylase, putative, group 3 [Saccharomonospora xinjiangensis
XJ-54]
gi|383462704|gb|EID54794.1| rRNA methylase, putative, group 3 [Saccharomonospora xinjiangensis
XJ-54]
Length = 322
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 91/280 (32%), Positives = 134/280 (47%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ +++R + ++MA + GISI E
Sbjct: 75 EIIAGRNPVVEALRAGV-PATALYVA--LNIDADDR-------VTEAVRMAADKGISILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P EL + + L VALD VTDP+NLGA
Sbjct: 125 VPREELDRKTNKALHQGLGLQVPPFSYASPDELLRAARESGDPPLLVALDGVTDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L ++ SA ++ V + S+G+ + + N+ + L A G +
Sbjct: 185 VIRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLREWASEGLMI 244
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G G+V ++ ++ P ++V+GSEG GL LV +C + V IP + A
Sbjct: 245 AGLDADGAVDIDSLDIDV----DPLVVVIGSEGRGLSRLVRETCDYTVSIP------MAA 294
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G VESLN SVA VLL +
Sbjct: 295 G----------------------VESLNASVAGAVLLAEV 312
>gi|359428380|ref|ZP_09219415.1| putative rRNA methyltransferase [Acinetobacter sp. NBRC 100985]
gi|358236165|dbj|GAB00954.1| putative rRNA methyltransferase [Acinetobacter sp. NBRC 100985]
Length = 249
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 79/268 (29%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + + L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQL-MQQHTNPLLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L + RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKDTTHTRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+ + ++V+G+E TGLRP+ + C V IP G++
Sbjct: 181 EKALPIQQCDFNGSIVIVMGAEDTGLRPITQSQCDQTVYIP-------MMGDL------- 226
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 227 --------------QSLNVSVATGMALY 240
>gi|376263097|ref|YP_005149817.1| rRNA methylase [Clostridium sp. BNL1100]
gi|373947091|gb|AEY68012.1| rRNA methylase, putative, group 3 [Clostridium sp. BNL1100]
Length = 319
Score = 111 bits (277), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 154/333 (46%), Gaps = 55/333 (16%)
Query: 248 RNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPST----------VPKMVGEGLYGV 297
R +F D K R KPE ++ + E + R T+ T VP+ + L G
Sbjct: 25 RKNFSGDSKKRGVKPEERKGFKSEPAKRGTYATPVKDTEFENIEKDNVVPEE-SDKLEGR 83
Query: 298 GPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG-YEKVLKMAENMGISIKETSKHD 356
V+ AL A R L++ +G +K+G +++ MA GI E K+
Sbjct: 84 NSVMEALKA-NRTINKLFIAKG-----------EKEGSIRQIIAMARQKGIITTEVDKNI 131
Query: 357 LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSA 416
L+ + R HQG++ + + V++ ++ + ++ Q + LDE++DP N GAI+R+A
Sbjct: 132 LDGMSTTRSHQGVIAYVAVKDYVEVDDILAAAQEKGQPPFIIILDEISDPHNFGAILRTA 191
Query: 417 YFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGS 475
GA GV++ + + L+ VSKAS+G++E + + N+ Q + +N W V S
Sbjct: 192 NAVGAHGVIIPKRRAIGLTSAVSKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDS 251
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
KA +++ P LV+GSEG G+ LV C +V IP GEI
Sbjct: 252 TGEKAFYESDLK--GPMALVVGSEGEGMGKLVREKCDFVVNIP-------MQGEIS---- 298
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA ++++ ++
Sbjct: 299 -----------------SLNASVAAAIVMYEIL 314
>gi|95930701|ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
684]
gi|95133181|gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
684]
Length = 244
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 132/275 (48%), Gaps = 43/275 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ V AL + R+ ALYV+ N R E+++ A +++K+
Sbjct: 5 LFGLNAVFEALG-QGRKVVALYVEA----QRNPR-------LEEIVAQATERHVAVKQCE 52
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ +VG+ HQG+V + V + +L S+ ++ ++ LD +TDP N GA+I
Sbjct: 53 RRQLDKMVGDVRHQGVVAQVKAQDFVSLAQLLAQSSQSER--FFLILDGITDPHNFGALI 110
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA G GV+ S P++G+V K ++G+L ++L N+ + + + G V G
Sbjct: 111 RSAAAAGCQGVIFAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYG 170
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ + L E P P LV GSEG G+RPL+ + C L+ IP +P
Sbjct: 171 LA-GEEGQSLFEAPLSAPIALVAGSEGRGIRPLIRKLCDGLIAIP--MP----------- 216
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
VESLNVSVA G+ L +V
Sbjct: 217 ---------------GRVESLNVSVATGIALFEVV 236
>gi|429770304|ref|ZP_19302372.1| RNA methyltransferase, TrmH family [Brevundimonas diminuta 470-4]
gi|429184843|gb|EKY25841.1| RNA methyltransferase, TrmH family [Brevundimonas diminuta 470-4]
Length = 214
Score = 110 bits (276), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 6/153 (3%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQG+ PLE V +++L E + V LD++TDPQN+GAI RSA FGA G+V
Sbjct: 39 HQGMAFKVQPLEGVALEDLA-----EPAEGVIVMLDQLTDPQNVGAIFRSALAFGARGIV 93
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
+ ++S L+G ++KAS+G+ E + N+ + L A++GWR +G S + L +
Sbjct: 94 VQDRHSPALAGALAKASAGATERLPCARVTNLSRALEKLADHGWRAIGMDGGSD-LTLEQ 152
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+PT++V+GSEG G+R LV C + RIP
Sbjct: 153 ALDARPTVIVMGSEGDGVRRLVAEHCEAMARIP 185
>gi|444431155|ref|ZP_21226326.1| putative RNA methyltransferase [Gordonia soli NBRC 108243]
gi|443888204|dbj|GAC68047.1| putative RNA methyltransferase [Gordonia soli NBRC 108243]
Length = 321
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 130/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALY+ N + D+ + ++A + GI+I E
Sbjct: 79 EHVLGRNPVLECLRAGV-PATALYLVA-------NSEPDDR--VAEAAQIAGDNGIAILE 128
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
KH+L+ + N HQG+ L +L + D L VALD +TDP+NLGA
Sbjct: 129 VGKHELDRMSANGLHQGIALQVPEYSYAHPDDLMRDAIDSGTPPLLVALDNITDPRNLGA 188
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + NM + L A +G ++
Sbjct: 189 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQATNMTRTLKDWAASGAQL 248
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 249 VGLDADGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIP-------MAGD-- 298
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 299 -------------------VESLNASVAAGVVL 312
>gi|402820679|ref|ZP_10870246.1| TrmH family RNA methyltransferase [alpha proteobacterium IMCC14465]
gi|402511422|gb|EJW21684.1| TrmH family RNA methyltransferase [alpha proteobacterium IMCC14465]
Length = 274
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 79/228 (34%), Positives = 119/228 (52%), Gaps = 29/228 (12%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
+YG+ V+AAL R+ L K ++ + AE + ++E
Sbjct: 38 IYGLHAVIAALQNPHRKCQRLMA--------------TKNALREIRQQAEIPANLEVQEA 83
Query: 353 SKHDLNMVVGNRP---HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
+ +N + +P HQG++L A+PL V LD + A + LD+VTDP+N+
Sbjct: 84 TPEQINKKL--KPGTVHQGVLLHAAPLPEV---SLDSVIAS---GKPIIVLDQVTDPRNI 135
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAIIR+A FGA G+++ NS SG ++K +SG+LE M L N+ + L S AE G+
Sbjct: 136 GAIIRAATVFGAGGLIMTRHNSPLSSGALAKTASGALEKMPLVRVANLARCLESLAEAGY 195
Query: 470 RVLGGSVSSKAVP-LNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
G + + L +IP QP V+G+EG GLR L + +CTHLVR
Sbjct: 196 LTCG--LDEEGTEWLGDIPRDQPIACVMGAEGKGLRRLTKENCTHLVR 241
>gi|383826112|ref|ZP_09981254.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
xenopi RIVM700367]
gi|383333874|gb|EID12322.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
xenopi RIVM700367]
Length = 309
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V ++A + GI+I E
Sbjct: 68 EVVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESV-RLAADSGIAILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L +A E +L VALD ++DP+NLGA
Sbjct: 118 VPRTDLDRITTNGLHQGIALQVPPYHYAHPDDLL-AAAMESPPALLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RS F GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 VVRSVAAFAGHGVLIPRRRSAAVTAVAWRTSAGAAARVPVARAANLTRTLKDWADRGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + A ++E+ P ++V+GSEG GL LV ++C +V IP P
Sbjct: 237 IGLD-AGGATTIDELDGTDPLVVVVGSEGKGLSRLVRQTCDEVVSIPMADP--------- 286
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 287 -------------------AESLNASVAAGVVLAEI 303
>gi|359772282|ref|ZP_09275715.1| putative rRNA methyltransferase [Gordonia effusa NBRC 100432]
gi|359310554|dbj|GAB18493.1| putative rRNA methyltransferase [Gordonia effusa NBRC 100432]
Length = 317
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 132/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK ALY+ + + D++ E V KMA + GI+I E
Sbjct: 75 EYVLGRNPVVECLRAKV-PATALYLVTSV--------EPDERVTEAV-KMAGDRGIAILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
SK +L+ N HQG+ L P ++ + + L VALD +TDP+NLGA
Sbjct: 125 VSKAELDRQSTNGMHQGIALQVPPYRYAHPDDVMRDAVASGEPPLLVALDNITDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L A NG ++
Sbjct: 185 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKDWAANGTQI 244
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L+E T++V+GSEG GL LV +C ++ IP AG+
Sbjct: 245 VGLDADGD-VTLDEYDGTGGTVIVVGSEGKGLSRLVRETCDSILSIP-------MAGD-- 294
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 295 -------------------VESLNASVAAGVVL 308
>gi|126640406|ref|YP_001083390.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii ATCC 17978]
Length = 226
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 30/239 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +D + +K+L++AE GIS+++ S+ L + G HQG+V P + K+LD +
Sbjct: 8 KGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLPFHQGVVAAVRPHPTLNEKDLDQL 67
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
A+ A L +ALD+VTDP NLGA IR+A G V++ SA L+ K ++G E
Sbjct: 68 LAETPDA-LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAE 126
Query: 448 LMELRYCNNMMQFLVSSAENGW-RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
++ N+ + L E RV+G + A+P+ + ++V+G+E TGLRP+
Sbjct: 127 KVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPI 186
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ C IP + GN ++SLNVSVA G+ L+
Sbjct: 187 TQAQCDQKAYIPMS----------------GN------------LQSLNVSVATGMALY 217
>gi|421666159|ref|ZP_16106251.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC087]
gi|410388084|gb|EKP40523.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC087]
Length = 237
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 75/239 (31%), Positives = 119/239 (49%), Gaps = 30/239 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +D + +K+L++AE GIS+++ S+ L + G HQG+V P + K+LD +
Sbjct: 19 KGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLPFHQGVVAAVRPHPTLNEKDLDQL 78
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
A+ A L +ALD+VTDP NLGA IR+A G V++ SA L+ K ++G E
Sbjct: 79 LAETPDA-LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAE 137
Query: 448 LMELRYCNNMMQFLVSSAENGW-RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
++ N+ + L E RV+G + A+P+ + ++V+G+E TGLRP+
Sbjct: 138 KVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPI 197
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ C IP + GN ++SLNVSVA G+ L+
Sbjct: 198 TQAQCDQKAYIPMS----------------GN------------LQSLNVSVATGMALY 228
>gi|256073948|ref|XP_002573289.1| rRNA methylase [Schistosoma mansoni]
gi|360042745|emb|CCD78155.1| putative rrna methylase [Schistosoma mansoni]
Length = 338
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 97/327 (29%), Positives = 144/327 (44%), Gaps = 64/327 (19%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN---MGIS 348
E LYG+ PVL AL+ + R+ Y LYV++ LS N K D ++ E GI
Sbjct: 27 ELLYGIHPVLCALTFRHRDIYRLYVKDTLS----NCKDPDNLVEISTFQITEKALKYGIP 82
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL---------DPISADEDQASLW-- 397
+ L + +R HQG++L+ SP + I +L + +S + A +
Sbjct: 83 VTRVPVEKLKELSNSRAHQGVILEVSPTTIQSISDLSIKNLLFSWNNLSGNLPYAKKYHR 142
Query: 398 ---VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE-LMELRY 453
+ LD + D N G I+RSA FFG S V+L S ++SK S G++E ++ R
Sbjct: 143 PTVLLLDHMMDTMNFGNILRSAAFFGISAVILSTSPCVSPSPLISKISVGAMESILFYRL 202
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG--------------------QPTI 493
+ +M + S N ++ G+ +P +++ +P I
Sbjct: 203 TDTVMD--MKSLSNAGFLIVGTCGESQLPSSKVSKSTDLLKPDEVGANNDNTGVYPRPLI 260
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
L LGSE GL V SC L+RIPG G+ Q S S
Sbjct: 261 LALGSESRGLSENVLNSCDLLLRIPGY----------------GDSTKLNQCISQTIPSS 304
Query: 554 LNVSVAAGVLLHHLV----GHQVSNNS 576
LNVSVAAG+LL+ L GH+ +N S
Sbjct: 305 LNVSVAAGILLYQLTMFRHGHEAANKS 331
>gi|317969745|ref|ZP_07971135.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. CB0205]
Length = 406
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + HQG+V+ A+ + + + L D +
Sbjct: 105 FLQLLREAKSGGVLVEEVTWSRLGQLTNGAVHQGIVMQAAAADTLDLGTLIDGCRDLGEP 164
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAI+RSA GA G+VL + SA L+G V+K ++G+LE + +
Sbjct: 165 PLLMALDGITDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARV 224
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L S G+RV+ G +V L+E P ++V GSEG GL L + C L
Sbjct: 225 VNLNRALDSLKNEGYRVI-GLAGEGSVALSEADLDGPLVVVTGSEGDGLSMLTRKHCDQL 283
Query: 515 VRIP 518
VRIP
Sbjct: 284 VRIP 287
>gi|427701747|ref|YP_007044969.1| rRNA methylase [Cyanobium gracile PCC 6307]
gi|427344915|gb|AFY27628.1| rRNA methylase, putative, group 3 [Cyanobium gracile PCC 6307]
Length = 611
Score = 110 bits (276), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/188 (36%), Positives = 109/188 (57%), Gaps = 9/188 (4%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+VL + E + + L +A
Sbjct: 244 FLQLLREAKSSGVLVEEVTWARLGQLTGGAVHQGIVLQPAAAETLDLTSLIEGCRSIGEA 303
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +A+D +TDP NLGAI+RSA GA G+VL + +A L+G V+K ++G+LE + +
Sbjct: 304 PLLIAVDGLTDPHNLGAIVRSAEALGAHGMVLPQRRNAGLTGSVAKVAAGALEHLPVARV 363
Query: 455 NNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
N+ + L + + G+RV+G G+VS + V L P ++V GSEG GL L RS
Sbjct: 364 VNLNRSLDALKQEGYRVVGLAEEGTVSLEEVDLE-----GPLVVVTGSEGDGLSLLTRRS 418
Query: 511 CTHLVRIP 518
C LVRIP
Sbjct: 419 CDQLVRIP 426
>gi|169797417|ref|YP_001715210.1| tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213155769|ref|YP_002317814.1| TrmH family RNA methyltransferase [Acinetobacter baumannii AB0057]
gi|301345142|ref|ZP_07225883.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB056]
gi|301510697|ref|ZP_07235934.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB058]
gi|301594957|ref|ZP_07239965.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB059]
gi|417575144|ref|ZP_12225997.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Canada BC-5]
gi|421659259|ref|ZP_16099480.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-83]
gi|421801027|ref|ZP_16236994.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Canada BC1]
gi|169150344|emb|CAM88241.1| putative tRNA/rRNA methyltransferase [Acinetobacter baumannii AYE]
gi|213054929|gb|ACJ39831.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii AB0057]
gi|400205877|gb|EJO36857.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Canada BC-5]
gi|408707970|gb|EKL53248.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-83]
gi|410406388|gb|EKP58400.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Canada BC1]
Length = 249
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + + A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQLLTETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + ++V+G+E TGLRP+ + C IP + G
Sbjct: 181 ENALPIQKCDFSGAVVIVMGAEDTGLRPITQAQCDQKAYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|218779780|ref|YP_002431098.1| TrmH family RNA methyltransferase [Desulfatibacillum alkenivorans
AK-01]
gi|218761164|gb|ACL03630.1| RNA methyltransferase, TrmH family, group 3 [Desulfatibacillum
alkenivorans AK-01]
Length = 249
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/236 (34%), Positives = 121/236 (51%), Gaps = 16/236 (6%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E LYG+ PV AL A R+F A+YV E + +G E +L +A GI
Sbjct: 1 MKTELLYGMHPVREALLAGKRQFQAVYVSE----------SRTGEGKEDILSLARERGIE 50
Query: 349 IKETSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
+K D + G +R QG+ S + + + EL A +Q ++ +DE+ DPQ
Sbjct: 51 VKTP---DQSFFKGQDRGGQGVAARVSLFKPIAL-ELLVKKAGGEQPLFFLLMDEINDPQ 106
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
N GA++R+A G +GV++ K S+PLS VSKAS+G+LE M + N+++ + +
Sbjct: 107 NCGALMRTALCAGVNGVIMPDKRSSPLSPAVSKASAGALEHMPVARVVNLVRSMQYLKDQ 166
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
G G + G P +V+G+EG GLRPLV + C LV IP P+
Sbjct: 167 GVWFFGLDARASGTVWEADLTG-PAAVVVGNEGKGLRPLVRKECDQLVSIPQAGPL 221
>gi|422012835|ref|ZP_16359477.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces georgiae
F0490]
gi|394752694|gb|EJF36366.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces georgiae
F0490]
Length = 325
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/242 (30%), Positives = 121/242 (50%), Gaps = 37/242 (15%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A ++G + E ++ DL++ HQG+ ++ E + +L S
Sbjct: 110 KDDR-VEEVIRLASSLGAPVFEVTRRDLDVATDGASHQGVAIEVRGYEYTPVDDLIAGSV 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FG GV++ + SA ++ K S+G+ +
Sbjct: 169 QQAGHPLLVALDQVTDPHNLGAVLRSAGAFGGDGVIIPERRSAGVTTAAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+++ L G+ V+G G + +PL + P +LV G+EGTGL
Sbjct: 229 PVARATNLVRALEDCKRAGFFVVGLDGGGDAPLRGLPLAD----GPLVLVAGAEGTGLSR 284
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV ++C +V IP + AVESLN +VA G+ L+
Sbjct: 285 LVRQTCDQIVSIPIS----------------------------SAVESLNAAVATGIALY 316
Query: 566 HL 567
+
Sbjct: 317 EV 318
>gi|326790453|ref|YP_004308274.1| TrmH family RNA methyltransferase [Clostridium lentocellum DSM
5427]
gi|326541217|gb|ADZ83076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
lentocellum DSM 5427]
Length = 297
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/333 (27%), Positives = 163/333 (48%), Gaps = 67/333 (20%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQR-WNRQENSGRTTWKEAAPSTVPK--MVGEG-LYG 296
++K+NKR SF++ EKPE+ R +NR+ S VP+ + E L+G
Sbjct: 21 ENKFNKR-ESFKK------EKPEFTRGYNRR-------------SVVPEDFEIDENILFG 60
Query: 297 VGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG-YEKVLKMAENMGISIKETSKH 355
V+ AL ++ RE + +Q+G +K+G K++ A+ GI E K
Sbjct: 61 RNAVIEALKSE-REIDKILIQKG-----------EKEGSVIKIISAAKAKGIVTLEVEKS 108
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
L+ + G HQG+V + E V ++E+ +A + + + + L+ + DP NLGAIIR+
Sbjct: 109 KLDELTGREKHQGVVAYVAAHEYVSVEEILEDAAAKGEPAFVLILENIQDPHNLGAIIRT 168
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A+ G G+++ + + L+G V+KAS+G+LE ++ +N+ Q + + G +
Sbjct: 169 AHTAGVHGIIIPKRRAVGLTGTVAKASAGALEHTKVAKVSNIAQTIKDLQQKGLWIACAD 228
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
+ K V E G P +V+GSEG G+ L +++C ++V +P
Sbjct: 229 MDGK-VLFEENLTG-PIGIVVGSEGEGISKLTKQTCDYVVSVP----------------- 269
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ V SLN SVAA ++++ +V
Sbjct: 270 -----------MYGKVTSLNASVAASLMVYEVV 291
>gi|358446344|ref|ZP_09156891.1| putative RNA methyltransferase [Corynebacterium casei UCMA 3821]
gi|356607756|emb|CCE55215.1| putative RNA methyltransferase [Corynebacterium casei UCMA 3821]
Length = 318
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 137/278 (49%), Gaps = 40/278 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK +LY+ +G + D++ E V +A +
Sbjct: 66 KETAEMVVGRNPVVECLHAKV-PATSLYIVQGT--------RNDERLSEAV-AIANARNL 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H ++ + GN HQG+ L P + + +L +AD+ + ++V LD +TDP+
Sbjct: 116 PILEVQRHAMDQMTGNGMHQGIGLQIPPYKYADVHDLIANAADKAEPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + NM + + +N
Sbjct: 176 NLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAARLPVARETNMTRTVQEFQKN 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++V+G + L+ G+ P ++V+GSEG G+ LV+ +C ++ IP
Sbjct: 236 GYQVVGLDAGGEHT-LDTYKGGKDPVVIVIGSEGKGISRLVKENCDVVMSIP-------- 286
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
S+ V+SLN SVAAG +L
Sbjct: 287 ------------------MTSW--VDSLNASVAAGAVL 304
>gi|328352968|emb|CCA39366.1| RNA methylase [Komagataella pastoris CBS 7435]
Length = 344
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 116/379 (30%), Positives = 187/379 (49%), Gaps = 88/379 (23%)
Query: 230 EEEGEEMEAVSDSKWNKRR----NSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPST 285
E++GE+ + W KR+ ++ ++ V+ E Q++ + + K+ +
Sbjct: 5 EKDGEDKDT-----WFKRKYAHVHAKQKQVRLDKEAARTQKFPSRNSDLSPDSKQIRRNR 59
Query: 286 VPKM--VGEGLYGVGPVLAALSAKTREFYA-LYVQEGLSLSSNNRKKKDKKGYEKVLKMA 342
PK + E ++G VLAAL A REF + LYV +N K+K +E++ ++
Sbjct: 60 PPKENPLEERIFGAQAVLAALKANNREFLSTLYV--------HNPKEK----HEEITELC 107
Query: 343 ENMGISIKET-SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA------------ 389
+ G+ IK SK+DLN++ N H G VL A+ + ++ L +++
Sbjct: 108 KERGVDIKLVDSKNDLNLLCNNNVHNGYVLKAAKFQTRELAALSTVTSKGVFSLTLQDYG 167
Query: 390 --DEDQAS---------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVV 438
E+Q L V +D V+DP NLGAIIRS+Y+ GA V + KN APL+ V
Sbjct: 168 VRSEEQFEVQRLNGSFPLGVYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVA 227
Query: 439 SKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVP------------LNEI 486
SK+S+G +E + + +QFL ++ ENGW + +VSS VP L+
Sbjct: 228 SKSSAGCMEFLPIFNVVKPLQFLEAANENGWATV-SAVSS--VPKKNANRELLSEELSST 284
Query: 487 PPGQPTILVLGSEGTGLRP-LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQF 545
QP +L++GSEG G+R L++RS +HLV + + ++D+
Sbjct: 285 LSEQPCLLIVGSEGDGIRKSLLDRS-SHLVSL---------KSQRKNLDS---------- 324
Query: 546 QSFMAVESLNVSVAAGVLL 564
+V+SLNVSVA VLL
Sbjct: 325 ----SVDSLNVSVATAVLL 339
>gi|318041276|ref|ZP_07973232.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CB0101]
Length = 556
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 104/184 (56%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L + HQG+VL A+ + + + L +
Sbjct: 247 FMQLLREAKAGGVLVEEVTWARLGQLTDGAVHQGIVLQAAAADTLDLGSLIDGCRSIGEP 306
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAI+RSA GA G+VL + SA L+G V+K ++G+LE + +
Sbjct: 307 PLLMALDGITDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARV 366
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + E G+RV+ G V L+E P ++V GSEG+GL L + C L
Sbjct: 367 VNLNRSLETLKEEGYRVI-GLAGEAGVALSEADLDGPLVIVTGSEGSGLSMLTRKHCDQL 425
Query: 515 VRIP 518
VRIP
Sbjct: 426 VRIP 429
>gi|441216347|ref|ZP_20976971.1| hypothetical protein D806_6138 [Mycobacterium smegmatis MKD8]
gi|440624499|gb|ELQ86361.1| hypothetical protein D806_6138 [Mycobacterium smegmatis MKD8]
Length = 293
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L AK ALYV G D++ E V +MA + GISI E
Sbjct: 51 ELVLGRNPVLECLRAKV-PATALYVALG--------TDADERVTESV-QMAADRGISILE 100
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + + HQGL L P +L + + +L VALD ++DP+NLGA
Sbjct: 101 VPRTDLDRMSNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLGA 160
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F GVV+ + SA ++ V + S+G+ + + N+ + L S A+ G ++
Sbjct: 161 IVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQI 220
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ PT++V+GSEG GL LV C +V IP P
Sbjct: 221 VGLDAGGDTT-LDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGP--------- 270
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 271 -------------------TESLNASVAAGVVL 284
>gi|323307222|gb|EGA60505.1| Mrm1p [Saccharomyces cerevisiae FostersO]
Length = 295
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 143/319 (44%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K+L+ + M ++
Sbjct: 6 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KILQXVDEMKVTT 52
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 53 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 112
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 113 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 172
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 173 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNE 232
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 233 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 274
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 275 IVDSLNVSVATALLIDNIL 293
>gi|386840938|ref|YP_006245996.1| tRNA/rRNA methyltransferase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374101239|gb|AEY90123.1| tRNA/rRNA methyltransferase [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451794232|gb|AGF64281.1| tRNA/rRNA methyltransferase [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 313
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 93/294 (31%), Positives = 139/294 (47%), Gaps = 43/294 (14%)
Query: 274 GRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK 333
GRT + + ++V G PV+ AL LYVQ+ + D++
Sbjct: 56 GRTQQRRGGGRSTSELV----VGRNPVVEALREGV-PASTLYVQQFID--------NDER 102
Query: 334 GYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQ 393
E + AE GI++ E + +L+ + HQGLVL P E ++L +ADE +
Sbjct: 103 VREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLLDAAADEGE 162
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
L VALD VTDP+NLGA++RS FG GVV+ + SA ++ K S+G+ +
Sbjct: 163 DPLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRSAGMTAGAWKTSAGTAARTPVAR 222
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPTILVLGSEGTGLRPLVERSCT 512
N+ + L + + G V+G + + V L ++ G P +V+GSEG GL LV +C
Sbjct: 223 ATNLTRTLEAYKKAGLTVVGLAADGE-VELGDLEALGGPVAIVVGSEGKGLSRLVGETCD 281
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
VRIP +P G A ESLN VAAG++L+
Sbjct: 282 FRVRIP--MP-----------------GGA---------ESLNAGVAAGIVLYE 307
>gi|390934103|ref|YP_006391608.1| TrmH family RNA methyltransferase [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569604|gb|AFK86009.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 248
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 135/277 (48%), Gaps = 45/277 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL A+++ RE +YV K K K++K A + I +
Sbjct: 8 IYGRNPVLEAINS-GREIEKIYVS-----------KNAKGNISKIIKSARDKNIIVSTAD 55
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + GN HQG+V S + ++++ ++++ + + LD +TD N GAII
Sbjct: 56 NVTLDKMSGNGNHQGIVALCSLYKYCDVEDILEYASEKGEKPFILLLDGITDTHNFGAII 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A F A G+V+ + SA ++ V K S+G+ E M++ +N+ + + + G ++G
Sbjct: 116 RTAEAFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINTAINNLKKQGVWIVG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
SV +K + + QP +V+GSEG G+ LV+++C +LV+IP GN+
Sbjct: 176 SSVDAKE-DFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNM---------- 224
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA + ++ +V
Sbjct: 225 --------------------NSLNASVAASIFMYEVV 241
>gi|145596730|ref|YP_001161027.1| RNA methyltransferase [Salinispora tropica CNB-440]
gi|145306067|gb|ABP56649.1| RNA methyltransferase, TrmH family, group 3 [Salinispora tropica
CNB-440]
Length = 373
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 95/303 (31%), Positives = 146/303 (48%), Gaps = 42/303 (13%)
Query: 268 NRQENSGRTTWKEAAPS--TVP-KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSS 324
R +GR+ AP T P K E L G PVL +L A ALYV +GL+ +
Sbjct: 102 GRGRPAGRSGGPRVAPGRRTNPAKDAPELLVGRNPVLESLRANV-PAIALYVAQGLN--T 158
Query: 325 NNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
++R ++++ A + GI++ E S+ +L+ + G HQG+ L P ++L
Sbjct: 159 DDR-------ISEIVRTAADRGIAMLEVSRAELDRMTGGVLHQGVGLQVPPFRYEPFEDL 211
Query: 385 DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
+A E A L VALD VTDP+NLGA+IRSA FGA GV + + +A ++ + S+G
Sbjct: 212 T-AAALEQPAPLLVALDGVTDPRNLGAVIRSAAAFGAQGVFVPERRAAGITATAWRTSAG 270
Query: 445 SLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLR 504
+ + + N+ + L + + G+ V+G + + P ++V+GSEG GL
Sbjct: 271 AAARVPVAQVTNLTRALKACKDAGFVVVGLDADGETDLYHLEAAVGPLVVVVGSEGRGLS 330
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
LV ++C V+IP + D VESLN SVAA V L
Sbjct: 331 RLVGQTCDLTVQIP----------MVSD------------------VESLNASVAAAVTL 362
Query: 565 HHL 567
+
Sbjct: 363 AEV 365
>gi|378716545|ref|YP_005281434.1| TrmH family RNA methyltransferase [Gordonia polyisoprenivorans VH2]
gi|375751248|gb|AFA72068.1| RNA methyltransferase, TrmH family, group 3 [Gordonia
polyisoprenivorans VH2]
Length = 316
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 128/273 (46%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D + E V K+A + ISI E
Sbjct: 73 EYVLGRNPVVECLRADV-PATALYVVTG--------SDPDDRVAEAV-KLAADRAISILE 122
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L V +L + D L VALD +TDP+NLGA
Sbjct: 123 VGKGELDRLSANGMHQGIALQVPEYSYVHPDDLMRDALDSGTPPLLVALDNITDPRNLGA 182
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L AE G ++
Sbjct: 183 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKDWAETGAQL 242
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L+ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 243 VGLDADGD-VTLDAYDGTGPTVIVVGSEGKGLSRLVRETCDSILSIP-------MAGD-- 292
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 293 -------------------VESLNASVAAGVVL 306
>gi|302559961|ref|ZP_07312303.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
griseoflavus Tu4000]
gi|302477579|gb|EFL40672.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
griseoflavus Tu4000]
Length = 314
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 121/252 (48%), Gaps = 36/252 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 92 LYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 143
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + DE Q L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 144 PPYEYAHPEDLVAGAHDEGQDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 203
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K S+G+ + N+ + L + + G V+G + +A + P +
Sbjct: 204 MTAGAWKTSAGAAARTPVARATNLTRALEAYKKAGITVVGLAADGEAELGSLAALDGPVV 263
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG GL LV +C H VRIP +P ES
Sbjct: 264 IVVGSEGKGLSRLVGETCDHRVRIP--MP--------------------------GGTES 295
Query: 554 LNVSVAAGVLLH 565
LN VAAG++L+
Sbjct: 296 LNAGVAAGIVLY 307
>gi|255325869|ref|ZP_05366961.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
tuberculostearicum SK141]
gi|255297081|gb|EET76406.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
tuberculostearicum SK141]
Length = 315
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 129/277 (46%), Gaps = 38/277 (13%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK LY+ G + DK+ E V M I
Sbjct: 66 KETAEMVVGRNPVIECLHAKV-PATTLYIVAGT--------RNDKRLSEAV-AMCNTRNI 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H+++ + GN HQG+ L P + + EL +A+ + ++V LD +TDP+
Sbjct: 116 PIIEVQRHEMDRMTGNGMHQGIGLQIPPYKYADVDELIARAAENARPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + + ++
Sbjct: 176 NLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAARLPVARATNITRTVQQFQKS 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G++V+G + P ++V+GSEG G+ LV +C ++ IP
Sbjct: 236 GYQVIGLDAGGEHTLDTYNGATDPVVIVIGSEGKGISRLVRENCDVIMSIP--------- 286
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ D VESLN SVAAG +L
Sbjct: 287 --MTDW-----------------VESLNASVAAGSVL 304
>gi|342218363|ref|ZP_08710977.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera sp. UPII
135-E]
gi|341589775|gb|EGS33037.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera sp. UPII
135-E]
Length = 246
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 125/260 (48%), Gaps = 39/260 (15%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
R+ LY+ +G + KG ++++ AE I ++ + D++ + HQG
Sbjct: 22 RKIRKLYITKG----------RQSKGIQEIITQAEQGHIPLEFIATKDMDALFPTTRHQG 71
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+ ++ P+ MV I + + + + + LD + D N+GAIIR+A GA V++
Sbjct: 72 IAAESEPIVMVGIDSVLAMVEAKGETPFLILLDGIEDVHNMGAIIRTAECAGAHSVLIPK 131
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
SAP++ V K S+G++E M L N+ Q + + G+ V+G +S ++ ++
Sbjct: 132 HRSAPINETVGKTSAGAIEYMPLVSIGNVTQTVQRLQKKGFWVIGADMSG-SIEYDQADM 190
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P +LV+GSEG G+ PLV++ C LVRIP F
Sbjct: 191 TVPLVLVIGSEGKGISPLVKKHCDLLVRIP----------------------------MF 222
Query: 549 MAVESLNVSVAAGVLLHHLV 568
V SLN SVA+ +L++ V
Sbjct: 223 GQVNSLNASVASAILIYEAV 242
>gi|254571825|ref|XP_002493022.1| Ribose methyltransferase [Komagataella pastoris GS115]
gi|238032820|emb|CAY70843.1| Ribose methyltransferase [Komagataella pastoris GS115]
Length = 397
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 102/311 (32%), Positives = 154/311 (49%), Gaps = 71/311 (22%)
Query: 292 EGLYGVGPVLAALSAKTREFYA-LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
E ++G VLAAL A REF + LYV N K+K +E++ ++ + G+ IK
Sbjct: 121 ERIFGAQAVLAALKANNREFLSTLYVH--------NPKEK----HEEITELCKERGVDIK 168
Query: 351 ET-SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD--------------EDQAS 395
SK+DLN++ N H G VL A+ + ++ L +++ E+Q
Sbjct: 169 LVDSKNDLNLLCNNNVHNGYVLKAAKFQTRELAALSTVTSKGVFSLTLQDYGVRSEEQFE 228
Query: 396 ---------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSL 446
L V +D V+DP NLGAIIRS+Y+ GA V + KN APL+ V SK+S+G +
Sbjct: 229 VQRLNGSFPLGVYIDGVSDPHNLGAIIRSSYYLGADFVAIAEKNCAPLNSVASKSSAGCM 288
Query: 447 ELMELRYCNNMMQFLVSSAENGWRVLGG--SVSSKAV-------PLNEIPPGQPTILVLG 497
E + + +QFL ++ ENGW + SV K L+ QP +L++G
Sbjct: 289 EFLPIFNVVKPLQFLEAANENGWATVSAVSSVPKKNANRELLSEELSSTLSEQPCLLIVG 348
Query: 498 SEGTGLRP-LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNV 556
SEG G+R L++RS +HLV + + ++D+ +V+SLNV
Sbjct: 349 SEGDGIRKSLLDRS-SHLVSL---------KSQRKNLDS--------------SVDSLNV 384
Query: 557 SVAAGVLLHHL 567
SVA VLL
Sbjct: 385 SVATAVLLRDF 395
>gi|334564024|ref|ZP_08517015.1| putative rRNA methylase [Corynebacterium bovis DSM 20582]
Length = 316
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/303 (30%), Positives = 136/303 (44%), Gaps = 47/303 (15%)
Query: 264 YQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLS 323
Y+R E R + P++V G PV+ L A ALYV G
Sbjct: 49 YRRKKEAERRARGRQNQHDKPEGPELV----VGRNPVVECLHANV-PATALYVAVG---- 99
Query: 324 SNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE 383
+ D + E V AE GI++ E S+ +L+ + GN HQG+ L P ++
Sbjct: 100 ----TQNDDRLAEAVHTCAER-GIAVLEVSRSELDTMTGNGLHQGVGLQVPPYSYEDVEG 154
Query: 384 LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
L D + + V LD +TDP+NLGA+IRS FG GVV+ + SA ++ V + S+
Sbjct: 155 LIGRVRDSGEPGMIVCLDNITDPRNLGAVIRSVAAFGGHGVVIPERRSASVTAVAWRTSA 214
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G+ + + NM++ L + G++V+G L+ P ++V+GSEG GL
Sbjct: 215 GTAARLPVAKATNMVRALKEFQQAGYQVVGLDAGGDHT-LDTYDGTTPVVIVVGSEGKGL 273
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA--VESLNVSVAAG 561
LV +C ++ +P MA VESLN SVAAG
Sbjct: 274 SRLVRETCDTVMSVP------------------------------MASWVESLNASVAAG 303
Query: 562 VLL 564
V+L
Sbjct: 304 VVL 306
>gi|392418465|ref|YP_006455070.1| rRNA methylase, putative, group 3 [Mycobacterium chubuense NBB4]
gi|390618241|gb|AFM19391.1| rRNA methylase, putative, group 3 [Mycobacterium chubuense NBB4]
Length = 313
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 127/273 (46%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV L S+ R + ++ A + GI+I E
Sbjct: 71 EIVLGRNPVVECLRAGV-PATALYVA--LGTDSDER-------LTEAVQTAGDRGIAILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQGL L P +L + + L VALD ++DP+NLGA
Sbjct: 121 VPRHDLDRIAANGMHQGLALQVPPYVYAHPDDLLAEAKRDAAQPLLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G +V
Sbjct: 181 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLNRTLKQWADAGVQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++EI P ++V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDAGGDTA-IDEIDGEGPIVVVVGSEGKGLSRLVRENCDAIVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 291 -------------------TESLNASVAAGVVL 304
>gi|417555438|ref|ZP_12206507.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-81]
gi|417559737|ref|ZP_12210616.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC137]
gi|421201514|ref|ZP_15658673.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC109]
gi|421456813|ref|ZP_15906151.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-123]
gi|421634005|ref|ZP_16074626.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-13]
gi|421806177|ref|ZP_16242049.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-A-694]
gi|395522319|gb|EJG10408.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC137]
gi|395563546|gb|EJG25199.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii OIFC109]
gi|400210517|gb|EJO41486.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-123]
gi|400391855|gb|EJP58902.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-81]
gi|408705112|gb|EKL50461.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii Naval-13]
gi|410407054|gb|EKP59042.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii WC-A-694]
Length = 249
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 128/268 (47%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILQLAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+LD + A+ A L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPTLNEKDLDQLLAETPDA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVQAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHLKETTHVRVIGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
A+P+ + ++V+G+E GLRP+ + C IP + G
Sbjct: 181 ENALPIQKCDFSGAVVIVMGAEDIGLRPITQAQCDQKAYIPMS----------------G 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVA G+ L+
Sbjct: 225 N------------LQSLNVSVATGMALY 240
>gi|325000167|ref|ZP_08121279.1| putative tRNA/rRNA methyltransferase [Pseudonocardia sp. P1]
Length = 325
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 96/278 (34%), Positives = 130/278 (46%), Gaps = 43/278 (15%)
Query: 291 GEG---LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
GEG + G PV+ L A AL+V G+S D++ E V +A GI
Sbjct: 76 GEGPETVLGRNPVVECLRAGV-PSTALHVATGMS--------ADERVAEAV-SLAAEQGI 125
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
SI E ++DL+ + G HQGL L P EL +AD + +L VALD VTDP+
Sbjct: 126 SILEVPRNDLDRLTGGALHQGLALQVPPYSYAHPDELLEAAADSGRPALTVALDGVTDPR 185
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA++RS FG GVV+ + +A ++ V + S+G+ + + N+ + L A
Sbjct: 186 NLGAVVRSVGAFGGHGVVVPQRRAAGMTAVAWRTSAGTAVRVPVARATNLTRTLREYASA 245
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G V+G + V L+E P LV GSEG GL LV +C V IP
Sbjct: 246 GLMVVGLAADGD-VSLDEFDLATGPLALVTGSEGKGLSRLVRETCDLTVSIP-------L 297
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
AG VESLN SVA GV+L
Sbjct: 298 AGR---------------------VESLNASVATGVVL 314
>gi|159040149|ref|YP_001539402.1| RNA methyltransferase [Salinispora arenicola CNS-205]
gi|157918984|gb|ABW00412.1| RNA methyltransferase, TrmH family, group 3 [Salinispora arenicola
CNS-205]
Length = 372
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/274 (32%), Positives = 134/274 (48%), Gaps = 39/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L G PVL +L A ALYV +GL+ S++R ++++ A + GI++ E S
Sbjct: 130 LVGRNPVLESLRANV-PAIALYVAQGLN--SDDR-------ISEIVRTAADRGIAMLEVS 179
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +L+ + G HQG+ L P ++L +A E A L VALD VTDP+NLGA+I
Sbjct: 180 RAELDRMTGGVLHQGVGLQVPPFRYEPFEDLT-AAALEQAAPLLVALDGVTDPRNLGAVI 238
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FGA GV L + +A ++ + S+G+ + + N+ + L + + G+ V+G
Sbjct: 239 RSAAAFGAQGVFLPERRAAGITATAWRTSAGAAARVPVAQVTNLTRALKACKDAGFVVVG 298
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ + P ++V+GSEG GL LV +C V+IP + D
Sbjct: 299 LDADGETDLYHLEASVGPLVVVVGSEGRGLSRLVGETCDLTVQIP----------MVSD- 347
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAA V L +
Sbjct: 348 -----------------VESLNASVAAAVTLAEV 364
>gi|297545334|ref|YP_003677636.1| TrmH family RNA methyltransferase [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296843109|gb|ADH61625.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
mathranii subsp. mathranii str. A3]
Length = 249
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 137/275 (49%), Gaps = 41/275 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G PV+ A+ + +E +Y+ K K K++ +A+ GI + T
Sbjct: 9 IFGRNPVMEAIKS-GKEIEKIYIS-----------KTAKGNISKIINLAKEAGIVVSTTD 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + G++ HQG+V ++ + ++++L + + + + LDE+TDP NLGAII
Sbjct: 57 NETLSKLAGSQNHQGIVALSAVYQYFEVEDLLEYAEQKKEKPFLLILDEITDPHNLGAII 116
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG G+++ + + ++ V K S+G++E M++ +N+ + + E G ++G
Sbjct: 117 RSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMKIAKVSNINNTIRNLKERGLWIVG 176
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V+ EI P LV+G+EG G+ LV ++C +V+IP G+I+
Sbjct: 177 TDVNGGK-SFEEIDYDFPVALVIGNEGKGVSKLVLQNCDFVVKIP-------MKGKIN-- 226
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA +L++ +V
Sbjct: 227 -------------------SLNASVAASLLVYQVV 242
>gi|375097540|ref|ZP_09743805.1| rRNA methylase, putative, group 3 [Saccharomonospora marina XMU15]
gi|374658273|gb|EHR53106.1| rRNA methylase, putative, group 3 [Saccharomonospora marina XMU15]
Length = 322
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 94/277 (33%), Positives = 135/277 (48%), Gaps = 46/277 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ +++R + ++ A + GISI E
Sbjct: 75 EIIAGRNPVVEALRAGV-PATALYVA--LNIDTDDR-------VTEAIRTAADKGISILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ G HQGL L P E +L I+ D + L VALD VTDP+NLGA
Sbjct: 125 VPRDELDRKTGGAVHQGLGLQVPPFEYAHPDDLLAIARDSGEPPLLVALDGVTDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA FGA GV+L + SA ++ V + S+G+ + + N+ + L + A+ G +
Sbjct: 185 VVRSAAAFGAHGVLLPGRRSAGMTAVAWRTSAGAAAKIPIAIAANLTRQLRAWAQEGLML 244
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G GSV ++ L P ++V+GSEG GL LV +C V IP + A
Sbjct: 245 AGLDADGSVDIDSLDLAT----DPLVVVVGSEGRGLSRLVRETCDVTVSIP------MAA 294
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
G VESLN SVA VLL
Sbjct: 295 G----------------------VESLNASVAGAVLL 309
>gi|182420073|ref|ZP_02951307.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
5521]
gi|237666689|ref|ZP_04526674.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
E4 str. BoNT E BL5262]
gi|182376110|gb|EDT73697.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
5521]
gi|237657888|gb|EEP55443.1| RNA methyltransferase, TrmH family, group 3 [Clostridium butyricum
E4 str. BoNT E BL5262]
Length = 277
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 40/275 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G V+ AL R A+YV SNN K + ++ MA++ I IKE
Sbjct: 38 VIGRNAVMEALKG-DRTIEAIYV-------SNN---KLEGSINAIMGMAKDQKILIKEVD 86
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L+ + HQG++ +P + ++ ++ ++ + +A V LDEV DP NLG+I
Sbjct: 87 KRKLDSMCDGETHQGVIAKVTPFKYSEVSDIFELAEQKGEAPFIVILDEVEDPHNLGSIA 146
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A FG G+++ + SA ++ V K+S G++E +++ NN+ + E G + G
Sbjct: 147 RTAELFGVHGIIIPKRRSASVTATVYKSSVGAIEHVKVAKVNNINSTIEELKEKGVWIYG 206
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ ++ +E+ P LV+G+EG G+ L + C L++IP G+I+
Sbjct: 207 ADIRAEEYS-HEVDYSGPCALVIGNEGRGMSKLTVQKCDKLIKIP-------MVGKIN-- 256
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVA G++++ ++
Sbjct: 257 -------------------SLNASVAGGIMMYEVL 272
>gi|359769277|ref|ZP_09273040.1| putative RNA methyltransferase [Gordonia polyisoprenivorans NBRC
16320]
gi|359313580|dbj|GAB25873.1| putative RNA methyltransferase [Gordonia polyisoprenivorans NBRC
16320]
Length = 316
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 128/273 (46%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D + E V K+A + ISI E
Sbjct: 73 EYVLGRNPVVECLRADV-PATALYVVTG--------SDPDDRVAEAV-KLAADRAISILE 122
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L V +L + D L VALD +TDP+NLGA
Sbjct: 123 VGKGELDRLSANGMHQGIALQVPEYSYVHPDDLMRDALDSGTPPLLVALDNITDPRNLGA 182
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L AE G ++
Sbjct: 183 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKDWAETGAQL 242
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L+ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 243 VGLDAEGD-VTLDTYDGTGPTVIVVGSEGKGLSRLVRETCDSILSIP-------MAGD-- 292
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 293 -------------------VESLNASVAAGVVL 306
>gi|343925929|ref|ZP_08765444.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433]
gi|343764280|dbj|GAA12370.1| putative RNA methyltransferase [Gordonia alkanivorans NBRC 16433]
Length = 320
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 134/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALY+ ++N+ + D++ E V K+A + ISI E
Sbjct: 77 EYVLGRNPVVECLRAGV-PATALYI------ATNS--EPDERVAEAV-KIAGDQAISILE 126
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L +L + L VALD +TDP+NLGA
Sbjct: 127 VGKPELDRLSTNGMHQGIALQVPEYRYTHPDDLMADAKASGTPPLLVALDNITDPRNLGA 186
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + N+ + L A++G ++
Sbjct: 187 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWADSGAQL 246
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L+E PT++V+GSEG GL LV SC ++ IP AG+
Sbjct: 247 VGLDADGD-VTLDEYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIP-------MAGD-- 296
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 297 -------------------VESLNASVAAGVVL 310
>gi|240281983|gb|EER45486.1| RNA methyltransferase [Ajellomyces capsulatus H143]
Length = 419
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 116/427 (27%), Positives = 177/427 (41%), Gaps = 105/427 (24%)
Query: 238 AVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG--EGLY 295
++S K + RN+ R + R+E+ EY + + AP ++P E +Y
Sbjct: 7 SLSFPKNRRERNAER--LAERSEQTEYTLERSPHTQPQVSI--TAPRSIPYTTAASEFVY 62
Query: 296 GVGPVLAALSAKTREFYALYVQ---EGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
G VLAAL R+ Y LY+ + +SL +D + ++K G+S+K+
Sbjct: 63 GSSAVLAALRCGRRKLYKLYIHNAPDKVSLRLGRHSPRDPM-LDTIIKFGLAAGVSVKQV 121
Query: 353 SKH---DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA-------------------- 389
+ + L + G RPH G +L+AS L + + L + +
Sbjct: 122 AGNWPKLLEKMSGGRPHNGCILEASQLPKLPVNGLLAVESPLDNHFNVSVCQQSVEEADV 181
Query: 390 -------------DEDQAS------------LWVALDEVTDPQNLGAIIRSAYFFGASGV 424
D D +S + LD + D N+GAIIRSAY+FG +
Sbjct: 182 NGTSGRIPRSTYRDGDSSSTGNDIKLAPRYPFALLLDGIRDEGNVGAIIRSAYYFGVDAI 241
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGG---------- 474
+L +NSA +S V KAS+G+ E + + N FL ++ NGWR
Sbjct: 242 ILSTRNSATISAVAVKASAGAAENIPILTTTNPTLFLKNTHMNGWRFFAAEAPAAAIASQ 301
Query: 475 -SVSSKA----------VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
S+S+ A LNE P IL+LGSE GL+ V + +V IPG I
Sbjct: 302 QSLSTSAEQILSRRDVKSKLNE----APCILMLGSEDQGLQKSVRQQADGVVVIPGAI-- 355
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHI---ED 580
+ GE D V+SLNVSVA+ +L +G S + E+
Sbjct: 356 -TSTGEEDRA----------------GVDSLNVSVASALLCEAFLGDPSSTGPGLSSSEE 398
Query: 581 SSTATVD 587
+TVD
Sbjct: 399 GMMSTVD 405
>gi|226183294|dbj|BAH31398.1| putative RNA methyltransferase [Rhodococcus erythropolis PR4]
Length = 325
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 128/276 (46%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A AL+V G S++R K+ ++ A + GISI E
Sbjct: 82 ETVLGRNPVVECLRAGV-PATALWVAVGTE--SDDRLKES-------VQRAADAGISILE 131
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + + L VALD +TDP+NLGA
Sbjct: 132 VPRSDLDRLSANGLHQGIALQVPPYRYAHPDDLLSEARKHAEPPLLVALDNITDPRNLGA 191
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RS FG GVV+ + SA +S V + S+G+ + + N+ + L A G +V
Sbjct: 192 VVRSVAAFGGHGVVIPERRSASVSAVAWRTSAGAAARLPIARATNLTRTLKDWASKGVQV 251
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L++ P ++V+GSEG GL LV +C ++ IP P
Sbjct: 252 VGLDAEGDTT-LDDFDGSGPVVIVVGSEGKGLSRLVRENCDAILSIPMAGP--------- 301
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 302 -------------------VESLNASVAAGVVLADI 318
>gi|229917377|ref|YP_002886023.1| TrmH family RNA methyltransferase [Exiguobacterium sp. AT1b]
gi|229468806|gb|ACQ70578.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium sp.
AT1b]
Length = 250
Score = 110 bits (274), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 15/233 (6%)
Query: 289 MVGEG---LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
M+ EG LYG PVL AL + R+ +++ EG + K +++ MA
Sbjct: 1 MMEEGIDFLYGRNPVLEALRSG-RDMNKVFIMEG----------QQKGPLAQIIAMANEA 49
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
+ + K L + G+ HQG+V + E ++++ ++A +++ L++ LDE+ D
Sbjct: 50 SVQVSFVPKTKLEKMAGSEHHQGVVAAVAAYEYKTVEDMFALAASKEETPLFILLDELED 109
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P NLG+I+R+A GA G+++ + S L+ V+KAS+G++E + + N+ + L
Sbjct: 110 PHNLGSILRTADAVGAHGIIIPKRRSVGLTQTVAKASTGAIEHIPVARVTNLTRTLEELK 169
Query: 466 ENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
E G V+G + ++ + P ++V+GSEG G+ LV SC LV +P
Sbjct: 170 EKGLWVVGTD-AKESQDYRRLDGNMPLVVVIGSEGKGMSRLVRESCDFLVHLP 221
>gi|409388349|ref|ZP_11240326.1| putative RNA methyltransferase [Gordonia rubripertincta NBRC
101908]
gi|403201423|dbj|GAB83560.1| putative RNA methyltransferase [Gordonia rubripertincta NBRC
101908]
Length = 319
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/273 (32%), Positives = 134/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALY+ ++N+ + D++ E V K+A + ISI E
Sbjct: 77 EYVLGRNPVVECLRAGV-PATALYI------ATNS--EPDERVAEAV-KIAGDQAISILE 126
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L +L + L VALD +TDP+NLGA
Sbjct: 127 VGKPELDRLSTNGMHQGIALQVPEYRYTHPDDLMADAKASGTPPLLVALDNITDPRNLGA 186
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + N+ + L A++G ++
Sbjct: 187 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWADSGAQL 246
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L+E PT++V+GSEG GL LV SC ++ IP AG+
Sbjct: 247 VGLDADGD-VTLDEYDGTGPTVIVVGSEGKGLSRLVRESCDSILSIP-------MAGD-- 296
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 297 -------------------VESLNASVAAGVVL 310
>gi|222055495|ref|YP_002537857.1| TrmH family RNA methyltransferase [Geobacter daltonii FRC-32]
gi|221564784|gb|ACM20756.1| RNA methyltransferase, TrmH family, group 3 [Geobacter daltonii
FRC-32]
Length = 245
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 91/282 (32%), Positives = 131/282 (46%), Gaps = 45/282 (15%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V+ AL K R F L+V G SS+ R EK+L +AE +
Sbjct: 1 MKDEIIYGLNSVMEALRGKRRAF-ELFVASG---SSDRR-------LEKLLDLAEEKRVP 49
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS--LWVALDEVTDP 406
++ K D++ + G HQG+ L E +L I E S L + LD V DP
Sbjct: 50 VRHRDKRDISRLCGTDHHQGIALRT---ERFAYAQLADILESETARSNGLLLVLDGVQDP 106
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
NLGA+IRSA GA GV++ + ++ V KAS+G++E + + N+ Q L
Sbjct: 107 HNLGALIRSAACAGAQGVIIPKDRAVGVTAAVEKASAGAIETIAVAEVTNIAQTLDELKA 166
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G+ + G S + + E LV+GSEG G+RPLV++ C LV IP +
Sbjct: 167 AGFWIYGADGESP-ISIFEQKLTGAVALVIGSEGEGIRPLVKKRCDILVSIP------LK 219
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G V SLN SVA G++L +V
Sbjct: 220 GG----------------------VNSLNASVAGGIMLFEVV 239
>gi|170741100|ref|YP_001769755.1| tRNA/rRNA methyltransferase SpoU [Methylobacterium sp. 4-46]
gi|168195374|gb|ACA17321.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium sp. 4-46]
Length = 268
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/275 (30%), Positives = 133/275 (48%), Gaps = 51/275 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PV AL R L E G ++ + + I+ +
Sbjct: 40 LYGWHPVAEALRNPRRRLTRLLATE--------------NGLARLTEEVGELRIAPETVR 85
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+++ +VG + HQGL L+A PL + I++L AD ++ +ALD++TDP N+GAI
Sbjct: 86 PGEISALVGPDAVHQGLYLEAEPLPVPPIEDL---PAD----AVLLALDQITDPHNVGAI 138
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A F + +V A++S +GV++K++SG LE + N+ + L+ E G+ +
Sbjct: 139 VRTAAAFAVTAIVTTARHSPAATGVLAKSASGGLEHVPFITVRNLAEALIRFGEQGFTRI 198
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G S VPL+E+ P +P ++VLG+EG GLR C + R+
Sbjct: 199 GLD-SEAPVPLSEVTPTRPLVIVLGAEGKGLRQRTRECCDVMARL--------------- 242
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
D G A++SLNVS AA + L+ L
Sbjct: 243 -DFPG------------AIKSLNVSNAAAITLYAL 264
>gi|441507058|ref|ZP_20988985.1| putative RNA methyltransferase [Gordonia aichiensis NBRC 108223]
gi|441448818|dbj|GAC46946.1| putative RNA methyltransferase [Gordonia aichiensis NBRC 108223]
Length = 317
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 136/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALY+ +++S + D++ E V K+A + GI+I E
Sbjct: 74 EYVLGRNPVLECLRAGV-PATALYI----AVNS----EPDERVAESV-KLAGDRGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L + +L + + L VALD +TDP+NLGA
Sbjct: 124 VGKPELDRMSSNGLHQGIALQVPEYQYAHPDDLMRDAMESGVPPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + N+ + L A+ G ++
Sbjct: 184 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKDWAQTGAQI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP AG+
Sbjct: 244 VGLDTEGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRETCDSVLSIP-------MAGD-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVL 307
>gi|381163363|ref|ZP_09872593.1| rRNA methylase, putative, group 3 [Saccharomonospora azurea NA-128]
gi|379255268|gb|EHY89194.1| rRNA methylase, putative, group 3 [Saccharomonospora azurea NA-128]
Length = 322
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 134/277 (48%), Gaps = 46/277 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ +++R + +++A + GISI E
Sbjct: 75 EIIAGRNPVVEALRAGV-PATALYVA--LNVDADDR-------VTEAVRVAADRGISILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P +L + + + L VALD VTDP+NLGA
Sbjct: 125 VPRDELDRKTNKAVHQGLGLQVPPFSYASAHDLLKAARESGEPPLLVALDGVTDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L ++ SA ++ V + S+G+ + + N+ + L A G +
Sbjct: 185 VIRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLREWASEGLMI 244
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G GSV + ++ P ++V+GSEG GL LV +C + V IP + A
Sbjct: 245 VGLDADGSVDIDTMNIDV----DPLVVVVGSEGRGLSRLVRETCDYTVSIP------MAA 294
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
G VESLN SVA VLL
Sbjct: 295 G----------------------VESLNASVAGAVLL 309
>gi|145296637|ref|YP_001139458.1| hypothetical protein cgR_2545 [Corynebacterium glutamicum R]
gi|417969577|ref|ZP_12610516.1| hypothetical protein CgS9114_01045 [Corynebacterium glutamicum
S9114]
gi|140846557|dbj|BAF55556.1| hypothetical protein [Corynebacterium glutamicum R]
gi|344046294|gb|EGV41960.1| hypothetical protein CgS9114_01045 [Corynebacterium glutamicum
S9114]
Length = 313
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 83/273 (30%), Positives = 132/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A+ ALYV EG ++N+ + + + A I + E
Sbjct: 69 ELVVGRNPVLECLHARV-PATALYVAEG---AANDER------LSEAVHTAAGRNIPVLE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+K +L+ + GN HQG+ L P E + +L +A + ++V LD +TDP+NLGA
Sbjct: 119 VNKLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAATSKKPGMFVILDNITDPRNLGA 178
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG +GV++ + SA ++ V + S+G+ + + NM + + +NG++V
Sbjct: 179 VIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQV 238
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ ++V+GSEG G+ LV +C ++ IP T G
Sbjct: 239 VGLDAGGDHT-LDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIP-------TEG--- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 288 ------------------WVESLNASVAAGVVL 302
>gi|317138163|ref|XP_001816718.2| hypothetical protein AOR_1_376184 [Aspergillus oryzae RIB40]
Length = 351
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 144/341 (42%), Gaps = 104/341 (30%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEG--------------LSLSSNNRKKKDKKGYEKVL 339
+YG V AAL R Y LYV + L+LS N + K G++++L
Sbjct: 34 IYGTSAVEAALRCSRRHMYKLYVYQASGEELSSAKVALRKLALSKNVKVKMAFGGWDRLL 93
Query: 340 -KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA--------- 389
KM+ RPH G VL+ASPL + ++ L + +
Sbjct: 94 DKMS-------------------AGRPHNGCVLEASPLPRLPVRGLKSVPSIKEEDFGVE 134
Query: 390 ---------------DEDQASLW---------VALDEVTDPQNLGAIIRSAYFFGASGVV 425
D+ + W + LD + DP NLGAIIRSAY+ G ++
Sbjct: 135 LGAQSREEALVNSTNDKLKIHHWDQRTRYPVVLLLDGIVDPGNLGAIIRSAYYLGVDAII 194
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV---SSKAVP 482
+NSAPLS V KAS+G+ E M L +N + F+ S NGW+ +SK V
Sbjct: 195 FAGRNSAPLSPVTIKASAGAAENMTLLEVSNEVDFIQRSKANGWKFYAADAPGPASKYVD 254
Query: 483 LNEIPPGQ------------PTILVLGSEGTGLRPLVERSCTHLVRIPG---NIPVDVTA 527
I G+ P ++++GSEG+GL ++ +V IPG P+
Sbjct: 255 TASIVEGKGTTEGEHVSTQSPCVIMMGSEGSGLSRHIKSHADSIVSIPGARLATPL---- 310
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V++D + V+SLNVSVAA +L+ +
Sbjct: 311 ----GVESDPSR-----------VDSLNVSVAAALLMEMFL 336
>gi|430375971|ref|ZP_19430374.1| RNA methyltransferase [Moraxella macacae 0408225]
gi|429541202|gb|ELA09230.1| RNA methyltransferase [Moraxella macacae 0408225]
Length = 265
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 141/274 (51%), Gaps = 29/274 (10%)
Query: 295 YGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSK 354
YG+ V A L + + L++Q+ + N + K K +K+L++A+ GIS++ ++K
Sbjct: 8 YGIHAVSAILEQRGIDALNLFIQD--NKQGNKQGDKTDKAVQKILELAKGYGISVQFSAK 65
Query: 355 HDLNMVVGNRPHQGLVLDASPLEM---VKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
L+ + + HQG+VL A P ++ +K+L +++ L + LD++TDP NLGA
Sbjct: 66 DKLSKLANSLHHQGVVLQARPAKVADETDLKQLIEQFYQQNKPILLLVLDQITDPNNLGA 125
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G S V++ +S+ L+ VV+K + G+ ELM N+ + L + G V
Sbjct: 126 CLRTAAAMGVSAVIVPKNHSSNLTAVVAKVAVGATELMTFIQVTNLARTLNDIKKQGVFV 185
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G ++ + A + E+ +V+GSEG G+R L +C LV IP
Sbjct: 186 YGTALDNSAKSVQEVDLTGNVAIVMGSEGDGIRRLTADTCDKLVYIPM------------ 233
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ G A++SLNVSVA G++L+
Sbjct: 234 ---IENERG---------AIQSLNVSVATGMVLY 255
>gi|225873641|ref|YP_002755100.1| TrmH family RNA methyltransferase [Acidobacterium capsulatum ATCC
51196]
gi|225791622|gb|ACO31712.1| RNA methyltransferase, TrmH family, group 3 [Acidobacterium
capsulatum ATCC 51196]
Length = 270
Score = 109 bits (273), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 120/232 (51%), Gaps = 22/232 (9%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK---VLKMAENMGISIK 350
LYG+ PV AL A +R+F + V +R+++D +K ++ + + G+ ++
Sbjct: 4 LYGLHPVEEALRAGSRKFDHVCV---------SRERQDHGAAQKLQRIVDLCRSEGVRLR 54
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
++ L + HQG+V + I++L AD L +ALD V DPQNLG
Sbjct: 55 FENREQLTRMAKTHAHQGVVAVVRERSFLTIEDLMAAPAD-GHPHLLLALDGVEDPQNLG 113
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A++RSA G GV+L + SAPLS V K S+G+ E + + N+++ L E
Sbjct: 114 ALLRSADGAGVDGVLLPERRSAPLSAVAVKTSAGAAEHIRIARVVNLVRALEQLKEQNIW 173
Query: 471 VLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G G++S A P+++VLG EG GL LV ++C HLVRIP
Sbjct: 174 CVGLDERGTMSYDAYDWT-----TPSVVVLGREGEGLHDLVRKTCDHLVRIP 220
>gi|311740179|ref|ZP_07714011.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
gi|311304734|gb|EFQ80805.1| RNA methyltransferase [Corynebacterium pseudogenitalium ATCC 33035]
Length = 315
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 129/277 (46%), Gaps = 38/277 (13%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK LY+ G + DK+ E V M I
Sbjct: 66 KETAEMVVGRNPVIECLHAKV-PATTLYIVAGT--------RNDKRLSEAV-AMCNTRNI 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H+++ + GN HQG+ L P + + EL +A+ + ++V LD +TDP+
Sbjct: 116 PIIEVQRHEMDRMTGNGMHQGIGLQIPPYKYADVDELIARAAENARPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + + ++
Sbjct: 176 NLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAARLPVARATNITRTVQQFQKS 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G++V+G + P ++V+GSEG G+ LV +C ++ IP
Sbjct: 236 GYQVVGLDAGGEHTLDTYNGATDPVVIVIGSEGKGISRLVRENCDVIMSIP--------- 286
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ D VESLN SVAAG +L
Sbjct: 287 --MTDW-----------------VESLNASVAAGSVL 304
>gi|359426519|ref|ZP_09217602.1| putative RNA methyltransferase [Gordonia amarae NBRC 15530]
gi|358238084|dbj|GAB07184.1| putative RNA methyltransferase [Gordonia amarae NBRC 15530]
Length = 317
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 91/273 (33%), Positives = 132/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV +++S+ D + E V +A + GI+I E
Sbjct: 74 EYVVGRNPVLECLRAGV-PATALYV----AINSD----PDDRVSESV-ALAADKGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+K +L+ + N HQG+ L +L + L VALD +TDP+NLGA
Sbjct: 124 ATKPELDRISINGLHQGVALQVPEYRYTHPDDLMAQAQASGTPPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L A NG ++
Sbjct: 184 VIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQATNLTRTLKDWASNGVQL 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L+E PT++V+GSEG GL LV SC ++ IP AGE
Sbjct: 244 VGLDAGGD-VTLDEYDGSGPTVIVVGSEGKGLSRLVRESCDSILSIP-------MAGE-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVL 307
>gi|427427282|ref|ZP_18917327.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Caenispirillum
salinarum AK4]
gi|425883983|gb|EKV32658.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Caenispirillum
salinarum AK4]
Length = 278
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 141/280 (50%), Gaps = 46/280 (16%)
Query: 291 GEG-LYGVGPVLAALSAKTREFYALY-VQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
GEG LYG PV AAL+ R+ + +E L + R D + V+++AE
Sbjct: 33 GEGWLYGRHPVEAALANPARKVRTVVGTREALE---DLRALLDARDDLPVVRVAE----- 84
Query: 349 IKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
K +L+ M+ HQGL L A+PL + I++L +AD +A + +ALD+VTDP
Sbjct: 85 -----KSELDAMLPPGAVHQGLALSAAPLPVPGIEDLLRQAADV-EAGVILALDQVTDPH 138
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
N+GAI+RSA FGA V+ +++ + V++K++SG++E + L N+ Q L
Sbjct: 139 NVGAILRSAAAFGALAVLTQDRHAPEETAVLAKSASGAVERVPLVRVGNLKQALEKLKAE 198
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G + + A G+ +LVLGSEGTG+R L +C HLVR+P
Sbjct: 199 NWWVAGMAADAPATLAGAGLSGK-VVLVLGSEGTGMRRLTREACDHLVRLP--------- 248
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A+ESLNVS AA V L+ L
Sbjct: 249 -------------------MTGAMESLNVSNAAAVALYEL 269
>gi|296392882|ref|YP_003657766.1| TrmH family RNA methyltransferase [Segniliparus rotundus DSM 44985]
gi|296180029|gb|ADG96935.1| RNA methyltransferase, TrmH family, group 3 [Segniliparus rotundus
DSM 44985]
Length = 296
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 134/276 (48%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L AK L V G+ D++ E V ++A N+G+ + E
Sbjct: 52 EWVLGRNPVLECLRAKV-PAVELLVASGID--------ADERVAESV-RIAGNVGVPVTE 101
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ PHQG+ L P E ++L + + + +L+VALD ++DP+NLGA
Sbjct: 102 VARFELDRRSSGAPHQGIGLRVRPYEYHHPEDLLTEAENSGRPALFVALDHISDPRNLGA 161
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA FG GV++ + SA L+ + + S+G+ + + N+ + L E G +
Sbjct: 162 VVRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLARSLKQWQERGLLL 221
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L++ +P LV+GSEG GL LV SC +V IP +G+
Sbjct: 222 VGLDAEGD-TSLDDFTGTEPLALVVGSEGKGLSRLVRESCDFVVSIP-------MSGQ-- 271
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLNVSVA GV+L +
Sbjct: 272 -------------------VESLNVSVATGVVLGEI 288
>gi|257068448|ref|YP_003154703.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
4810]
gi|256559266|gb|ACU85113.1| rRNA methylase, putative, group 3 [Brachybacterium faecium DSM
4810]
Length = 320
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 74/237 (31%), Positives = 118/237 (49%), Gaps = 36/237 (15%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++++A G+ + E S+ DL+ + + HQG+ L P E +++L I+ + + L
Sbjct: 108 EIMRLATARGLPVAEASRTDLDRMTDHSVHQGVALTIPPYEYADVQDLLRIAEERFEPPL 167
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGAI+RSA FGA GV+L + S ++ V K ++G+ + + N
Sbjct: 168 LVALDGITDPRNLGAILRSADAFGAHGVILPERRSVSMTASVWKVAAGAAGRVRVAQVTN 227
Query: 457 MMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
+ + L + E LG G V+++ + L QP +LV+G+EG GL L C
Sbjct: 228 LNRTLTALKEQDVFALGLDAEGDVTTRGLELGT----QPAVLVVGAEGKGLSRLARDICD 283
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
+V IP G AE SLN SVAA + L+ + G
Sbjct: 284 QVVSIP-------------------MGGRAE---------SLNASVAAAIALYEISG 312
>gi|449296087|gb|EMC92107.1| hypothetical protein BAUCODRAFT_78076, partial [Baudoinia
compniacensis UAMH 10762]
Length = 325
Score = 109 bits (273), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 105/349 (30%), Positives = 154/349 (44%), Gaps = 78/349 (22%)
Query: 283 PSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
P ++P + LYG + AAL A+ R+ Y LY+ R DK ++ V+
Sbjct: 1 PVSIPYTTAASQFLYGSNVIFAALRARRRKLYHLYLHPRF----EGRSDTDK--HDTVIA 54
Query: 341 MAENMGISI-KETSKHDLNMVVGNRPHQGLVLDASPL------EMVKIK------ELDPI 387
A+ GI + K T ++ + G+RPH G VL+AS L + K++ EL+
Sbjct: 55 AAKRAGIPVQKHTDLALMDKMSGSRPHNGAVLEASKLPAPPVLALGKVEGGRVALELERQ 114
Query: 388 SADEDQAS----------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
S +E + + + LD + DP NLG I+RSA+FFG V +
Sbjct: 115 SREESEVNGSPEAFEVLKRTWRQPFLLFLDGILDPGNLGGILRSAHFFGVDAVAVATNTC 174
Query: 432 APL-SGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR---------------VLGGS 475
A L S VV+KASSG+ E + L F+ S E GW+ ++
Sbjct: 175 ATLDSAVVAKASSGACEALRLFSIPKPSAFIHDSREAGWKIHAAVAPDAGNGRRQIMSAE 234
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
+++K+ PL E P IL+LG+EG GLR + + LV +I AG + DV
Sbjct: 235 IATKS-PLAE----HPVILMLGAEGAGLRANLVKHADKLV----SIQQGERAGNMPDVGL 285
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTA 584
D SLNV VAAGVL+ + V S + TA
Sbjct: 286 D----------------SLNVGVAAGVLIEAFLRKPVGAQSRASEERTA 318
>gi|333896169|ref|YP_004470043.1| TrmH family RNA methyltransferase [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111434|gb|AEF16371.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 248
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 78/281 (27%), Positives = 136/281 (48%), Gaps = 45/281 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL A+++ RE +YV K K K++K A + I +
Sbjct: 8 IYGRNPVLEAINS-GREIEKIYVS-----------KSAKGNISKIIKSARDKNIIVSTAD 55
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + GN HQG+V S + ++++ + ++ + + LD +TD N GAII
Sbjct: 56 NVTLDKMSGNGNHQGVVALCSLYKYCDVEDILEYANEKGEKPFILLLDGITDTHNFGAII 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A F A G+V+ + SA ++ V K S+G+ E M++ +N+ + + + G ++G
Sbjct: 116 RTAEAFSAHGIVIPKRRSAVVNSTVVKTSAGATEYMKIAKVSNINNAINNLKKQGVWIVG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
SV +K + + QP +V+GSEG G+ LV+++C +LV+IP GN+
Sbjct: 176 SSVDAKE-DFSNVDYDQPIAIVIGSEGEGISELVKKNCDYLVKIPMMGNM---------- 224
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
SLN SVAA + ++ +V ++
Sbjct: 225 --------------------NSLNASVAASIFMYEVVRQRI 245
>gi|354546584|emb|CCE43316.1| hypothetical protein CPAR2_209610 [Candida parapsilosis]
Length = 434
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 92/329 (27%), Positives = 144/329 (43%), Gaps = 92/329 (27%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN-MGISIK 350
E +YG P+ + L A+ R LY D G V+K A+ GI +
Sbjct: 140 EFVYGTHPIKSVLQARKRPILGLYTFNA----------DDDNG---VIKQAQKEYGIKAQ 186
Query: 351 ET-SKHDLNMVVGNRPHQGLVLDASPLEM---------------VKIKELDPISA----- 389
K+ LN++ N H GLVL L+M V +++ D + +
Sbjct: 187 RVRDKNALNVLSKNGVHNGLVLKTKALDMPYIKNCGHAENGTYTVTVEDEDGVDSEKELT 246
Query: 390 -----DEDQAS----LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK 440
D D+ + L + LDE+TDPQN+G+I+R+AYFFG +V+ +SA L V +K
Sbjct: 247 VLRKKDNDEVNELFPLALFLDEITDPQNMGSILRTAYFFGIDFIVIPDHSSAKLGPVANK 306
Query: 441 ASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ---------- 490
ASSG+L+L+++ + ++F+ S ENGW V+ S L E+
Sbjct: 307 ASSGALDLIDIYQTDRSLKFIDSVRENGWNVISTSAKPDESNLEELKDKDHKIEMSLKDK 366
Query: 491 --------------PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
P +LV+GSEG G+R ++ +LV + + E DD+
Sbjct: 367 FINLDSLKTILKRTPVMLVIGSEGKGVRTNMKLRSDYLVGVQKH-------RENDDI--- 416
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V+SLNV VA G+++
Sbjct: 417 --------------VDSLNVGVATGIIVQ 431
>gi|424874840|ref|ZP_18298502.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393170541|gb|EJC70588.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 296
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 138/284 (48%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPQKRKR--GGEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D E +GI + S +++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEVD----------VEALGIPFEIVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------ESPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL GQ LVLGSEG GLR + L R+ PG+I
Sbjct: 231 PAPLEGTFSGQKVALVLGSEGKGLRQKTRETVNALARLDMPGSI 274
>gi|326383075|ref|ZP_08204764.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
NRRL B-59395]
gi|326198211|gb|EGD55396.1| RNA methyltransferase, TrmH family, group 3 [Gordonia neofelifaecis
NRRL B-59395]
Length = 318
Score = 109 bits (272), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/273 (31%), Positives = 134/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV ++ ++ R K+ + A + GISI E
Sbjct: 75 EYVVGRNPVVECLRAEV-PATALYVMT--TIDADERVKE-------AVHTAGDRGISILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQGL L + ++L + A L VALD +TDP+NLGA
Sbjct: 125 VGKPELDRMSPNGLHQGLALQVPEYQYAHPEDLMADALAGSSAPLLVALDNITDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + N+ + L+ A+ G ++
Sbjct: 185 VIRSVAAFGGHGVVIPQRRSAGMTAVAWRTSAGAAARLPVATTPNLNRTLLDWAKKGAQI 244
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV +C ++ IP
Sbjct: 245 VGLDAGGD-VSLDDYDGTGPTVIVVGSEGKGLSRLVRENCDSILSIP------------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ +D VESLN SVAAGV+L
Sbjct: 291 -IASD--------------VESLNASVAAGVVL 308
>gi|148242427|ref|YP_001227584.1| tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
gi|147850737|emb|CAK28231.1| Possible tRNA/rRNA methyltransferase [Synechococcus sp. RCC307]
Length = 442
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 105/184 (57%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+VL + + ++ L A +A
Sbjct: 184 FLQLLREAKSSGVLVEEVTWARLAQLCGGAVHQGIVLQTAAAQTHDLETLIDSCAGLGEA 243
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +A+D +TDP NLGAI+RSA GA G+VL + SA L+G V+K ++G+LE + +
Sbjct: 244 PLLMAVDGLTDPHNLGAIVRSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARV 303
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + G+RV+G + A L E P ++V GSEG GL L R C L
Sbjct: 304 VNLNRSLERLKDAGYRVVGLAEEGSAT-LAEADLDGPLVVVTGSEGQGLSMLTRRHCDQL 362
Query: 515 VRIP 518
VRIP
Sbjct: 363 VRIP 366
>gi|296118936|ref|ZP_06837509.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
ammoniagenes DSM 20306]
gi|295968034|gb|EFG81286.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
ammoniagenes DSM 20306]
Length = 317
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 134/278 (48%), Gaps = 40/278 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK LY+ +G + D++ E V +A +
Sbjct: 66 KETAEMVVGRNPVIECLHAKV-PATNLYIAQGT--------RSDERLAEAV-AIANARNL 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H ++ + GN HQG+ L P + + +L +A + + ++V LD +TDP+
Sbjct: 116 PILEVQRHVMDQMTGNGMHQGIGLQIPPYKYADVHDLIAEAAKKQEPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + NM + + +N
Sbjct: 176 NLGAVIRSVAAFGGDGVIIPERRSASVTAVAWRTSAGTAARLPVARETNMTRTVQEFQKN 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++V+G + L+ G+ P ++V+GSEG G+ LV +C ++ IP
Sbjct: 236 GYQVVGLDAGGEHT-LDTYKGGKDPVVIVIGSEGKGISRLVRENCDVIMSIP-------- 286
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
S+ VESLN SVAAG +L
Sbjct: 287 ------------------MTSW--VESLNASVAAGAVL 304
>gi|111225852|ref|YP_716646.1| tRNA/rRNA methyltransferase [Frankia alni ACN14a]
gi|111153384|emb|CAJ65140.1| tRNA/RRNA methyltransferase [Frankia alni ACN14a]
Length = 348
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 78/223 (34%), Positives = 112/223 (50%), Gaps = 31/223 (13%)
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
GI++ + ++ DL+ + G PHQGL L P + A L VALD VTD
Sbjct: 150 GIAVVDVARPDLDRMCGTAPHQGLALAVPPFRYTH-PDDLLARARAAAPGLVVALDGVTD 208
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+NLGA++RSA FGA GV++ + +A ++ K S+G+ + + N+ + LVS A
Sbjct: 209 PRNLGAVVRSAAAFGAHGVLVPERRAAGITAAAWKTSAGAAARLPVARATNLARTLVSYA 268
Query: 466 ENGWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
E G V+G + + ++E+ P +LV+GSEG GL LVE+ C VRIP
Sbjct: 269 EAGLFVVGLAADADTT-IDELEMATDPVVLVIGSEGRGLSRLVEQRCDVTVRIP------ 321
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AG AVESLN VAAG+ L +
Sbjct: 322 -MAG---------------------AVESLNAGVAAGIALAEI 342
>gi|421642630|ref|ZP_16083145.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-235]
gi|421649231|ref|ZP_16089626.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-251]
gi|421697997|ref|ZP_16137541.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-58]
gi|404573043|gb|EKA78083.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-58]
gi|408512684|gb|EKK14323.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-235]
gi|408514004|gb|EKK15616.1| RNA methyltransferase, TrmH family, group 3 [Acinetobacter
baumannii IS-251]
Length = 233
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 118/239 (49%), Gaps = 30/239 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +D + +K+L++AE GIS+++ S+ L + G HQG+V P + K+LD +
Sbjct: 15 KGRDDQRLQKILQLAEPFGISVQKASRDSLEKLAGLPFHQGVVAAVRPHPTLNEKDLDQL 74
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ A L +ALD+VTDP NLGA IR+A G V++ SA L+ K ++G E
Sbjct: 75 LTETPDA-LLLALDQVTDPHNLGACIRTAAAMGVQAVIVPRDRSASLTPTARKVAAGGAE 133
Query: 448 LMELRYCNNMMQFLVSSAENGW-RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
++ N+ + L E RV+G + A+P+ + ++V+G+E TGLRP+
Sbjct: 134 KVKFIQVTNLARTLAHLKETTHVRVIGTMLDENALPIQKCDFSGAVVIVMGAEDTGLRPI 193
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+ C IP + GN ++SLNVSVA G+ L+
Sbjct: 194 TQAQCDQKAYIPMS----------------GN------------LQSLNVSVATGMALY 224
>gi|39996562|ref|NP_952513.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|409911985|ref|YP_006890450.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
sulfurreducens KN400]
gi|39983443|gb|AAR34836.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
sulfurreducens PCA]
gi|298505578|gb|ADI84301.1| 23S rRNA (2'-O-methyl-G2251)-methyltransferase [Geobacter
sulfurreducens KN400]
Length = 245
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 85/282 (30%), Positives = 130/282 (46%), Gaps = 40/282 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ V+ AL R F L+V +R+ D++ EK+L A G+ ++
Sbjct: 4 EILYGINSVMEALRGSRRAF-ELFV---------SRETHDRR-TEKLLAFAAERGVPVRT 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K DL + G HQG+ L ++++ + L + LD + DP NLGA
Sbjct: 53 RDKRDLARLCGTDHHQGVALRVEGFAYAALEDIIASWQSSGEPGLILVLDGIQDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA GA GV++ +A ++ V K S+G+ E + + N++Q L + E G+
Sbjct: 113 LIRSAACAGAHGVIIPRDRAAGVTASVEKISAGATETIPVAQVTNVVQALETLKEEGFWA 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G+ S A L ++V+G EG G+RPLV + C LV IP + G
Sbjct: 173 F-GTADSAASSLYSHDLTGNVVIVIGGEGEGVRPLVRKKCDFLVAIP------LKGG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V SLN SVA GV+L +V ++S
Sbjct: 223 -------------------VSSLNASVAGGVVLFEVVRQRLS 245
>gi|379057806|ref|ZP_09848332.1| TrmH family RNA methyltransferase [Serinicoccus profundi MCCC
1A05965]
Length = 322
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 109/204 (53%), Gaps = 11/204 (5%)
Query: 319 GLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEM 378
G L NR + D + E + +A GI + E+ + +L+ + HQGLVL P +
Sbjct: 98 GTVLHIGNRMESDDRVRESI-TLATEAGIPVMESPRGELDRMTDGAVHQGLVLAVPPYDY 156
Query: 379 VKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVV 438
+L +S A L VALD +TDP+NLGAI+RSA FGA GV++ A+ SA ++
Sbjct: 157 AHPDDL--LSQQLPGAPLIVALDGITDPRNLGAIVRSAGAFGAHGVIVPARRSAGMTAAA 214
Query: 439 SKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTIL 494
K S+G+ + + N+ + L + G+ V+G G V+ + L + QP ++
Sbjct: 215 WKTSAGAAARIPVAQATNLTRALEGYRKVGFFVVGLDADGDVTLPGLDLAD----QPLVV 270
Query: 495 VLGSEGTGLRPLVERSCTHLVRIP 518
V+GSEG GL LV +C +V IP
Sbjct: 271 VVGSEGKGLSRLVRETCDQIVSIP 294
>gi|312194281|ref|YP_004014342.1| TrmH family RNA methyltransferase [Frankia sp. EuI1c]
gi|311225617|gb|ADP78472.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EuI1c]
Length = 366
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 118/222 (53%), Gaps = 19/222 (8%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYV GL D++ + K+A G+++ + + +L+ + G PHQGL L
Sbjct: 143 LYVAGGLEF--------DER-LTEARKLAGRAGMAVVDIGRFELDRLCGVAPHQGLALVV 193
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P +L + D L VALD VTDP+NLGA++RSA FGA GVV+ + +A
Sbjct: 194 PPFRYAHPDDLLARARASDP-GLLVALDGVTDPRNLGAVVRSAAAFGAQGVVVPERRAAG 252
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG-QPT 492
++ K S+G+ + + N+ + L S A+ G V+G + ++ V L+++ P
Sbjct: 253 MTAAAWKTSAGAAARLPVARATNLNRTLRSYADGGLVVVGLAANAD-VSLDDLAAATDPI 311
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVD 534
+LV+GSEG GL LV +C LVRIP AGE++ ++
Sbjct: 312 VLVIGSEGRGLSRLVGENCDLLVRIP-------MAGEVESLN 346
>gi|86357288|ref|YP_469180.1| tRNA/rRNA methyltransferase [Rhizobium etli CFN 42]
gi|86281390|gb|ABC90453.1| probable tRNA/rRNA methyltransferase protein [Rhizobium etli CFN
42]
Length = 296
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 136/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYANLRRAHRDAKRERGEIPTPQPQKRRR--GAEDWK--PPALAPDQVY--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+ + ++ R + D E +GI + S H+++ V
Sbjct: 73 RAALDNPERKKIKLFTTQ----NALARLEID----------VETLGIPFEIVSPHEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G LVLGSEG GLR + T L R+ PG I
Sbjct: 231 PAPLEGTFSGDKVALVLGSEGKGLRQKTRETVTALARLDMPGAI 274
>gi|220930947|ref|YP_002507855.1| RNA methyltransferase [Halothermothrix orenii H 168]
gi|219992257|gb|ACL68860.1| RNA methyltransferase [Halothermothrix orenii H 168]
Length = 244
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 135/273 (49%), Gaps = 40/273 (14%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G PV+ A+ + R +++QEG+ R KK ++++K A I +++ K
Sbjct: 6 GRNPVIEAIKS-GRTIKKIFIQEGV------RGKK----VDRIIKEASRFNIPLQKAKKD 54
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
L+ + HQG++ A ++ V +E+ I+ ++ + + LD+V DP NLGAIIR+
Sbjct: 55 FLDKKARSHSHQGIIAMADDIKYVSPREMVEIAREKGEDPFIIILDQVQDPHNLGAIIRT 114
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
AY GA G++ K SA ++ VV+KAS+G++ + L +N+ + + G + G
Sbjct: 115 AYAAGAHGLIYPRKRSADITPVVTKASAGAVNHLPLAKVSNINYTIADLKDMGLWITGTD 174
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
V P P LV+G+EG G+R LV+ +C +V IP +GE+
Sbjct: 175 VRGTR-PYYSADYKGPVGLVIGNEGKGMRRLVKENCDFVVNIP-------MSGELG---- 222
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAAGV++ +V
Sbjct: 223 -----------------SLNASVAAGVVIFEVV 238
>gi|255654143|ref|ZP_05399552.1| putative tRNA/rRNA methyltransferase [Clostridium difficile
QCD-23m63]
Length = 245
Score = 109 bits (272), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+K++ MA++ I I+ KH L+ V + HQG++ AS + ++ EL + ++D+
Sbjct: 35 KKIIGMAKDKNIIIQYVDKHKLDEVSTSHSHQGVIAYASEHKYYELDELIDLVKNKDEDP 94
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+TDP NLG+IIR+A GA GV++ + S ++ VV+KAS+G++E M +
Sbjct: 95 FFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVT 154
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N++ + E G + + + + P +V+GSEG G+ LV+++C +V
Sbjct: 155 NIVNTIKRLKEEGLWIAAADMDGETFYKQNLT--GPLGVVIGSEGFGISRLVKQNCDFIV 212
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P GN V SLN SVA G+LL+ +
Sbjct: 213 KMP----------------MIGN------------VTSLNASVAGGILLYEI 236
>gi|410865422|ref|YP_006980033.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acidipropionici ATCC 4875]
gi|410822063|gb|AFV88678.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acidipropionici ATCC 4875]
Length = 326
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 45/312 (14%)
Query: 260 EKPEYQRW-NRQENSGRTTWKEAAPSTVPKMVG-EGLYGVGPVLAALSAKTREFYALYVQ 317
++P ++ + ++Q+ R + + P T PK VG E + G VL AL A A YV
Sbjct: 46 DRPYHKAYKDKQQREARQPKQSSGPRT-PKGVGPEWVIGRNAVLEALHAGL-PVRASYVA 103
Query: 318 EGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLE 377
EG S R+ +L + + + + ++ +L+ + G HQG+ + E
Sbjct: 104 EGAEHDSRLRE---------ILSFTADHSMPMLQITRGELDRLTGGTNHQGVAIRMPEYE 154
Query: 378 MVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGV 437
++ +L + L VALD+VTDP+NLGAIIRSA FGA GV++ ++ SA ++
Sbjct: 155 YAEVDDLIAAGVESPAGGLVVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAA 214
Query: 438 VSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG--QPTILV 495
K S+G+ + + +N+ Q L + G+ V+G ++ +A PG P +LV
Sbjct: 215 AWKTSAGAAARIPVAMASNLNQSLGKLKKAGYTVVG--LAGEADADIAAAPGLDGPLVLV 272
Query: 496 LGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLN 555
+GSEG GL L +C L IP +T+ VESLN
Sbjct: 273 IGSEGEGLARLTRETCDTLASIP------ITS----------------------QVESLN 304
Query: 556 VSVAAGVLLHHL 567
SVAA + L+ +
Sbjct: 305 ASVAASIALYEV 316
>gi|296449818|ref|ZP_06891585.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296877882|ref|ZP_06901902.1| RNA methyltransferase [Clostridium difficile NAP07]
gi|296261305|gb|EFH08133.1| RNA methyltransferase [Clostridium difficile NAP08]
gi|296431079|gb|EFH16906.1| RNA methyltransferase [Clostridium difficile NAP07]
Length = 248
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+K++ MA++ I I+ KH L+ V + HQG++ AS + ++ EL + ++D+
Sbjct: 38 KKIIGMAKDKNIIIQYVDKHKLDEVSTSHSHQGVIAYASEHKYYELDELIDLVKNKDEDP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+TDP NLG+IIR+A GA GV++ + S ++ VV+KAS+G++E M +
Sbjct: 98 FFIILDEITDPHNLGSIIRTADAVGAHGVIIPKRRSVHITPVVAKASAGAVEYMPVCKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N++ + E G + + + + P +V+GSEG G+ LV+++C +V
Sbjct: 158 NIVNTIKRLKEEGLWIAAADMDGETFYKQNLT--GPLGVVIGSEGFGISRLVKQNCDFIV 215
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P GN V SLN SVA G+LL+ +
Sbjct: 216 KMP----------------MIGN------------VTSLNASVAGGILLYEI 239
>gi|322436781|ref|YP_004218993.1| TrmH family RNA methyltransferase [Granulicella tundricola
MP5ACTX9]
gi|321164508|gb|ADW70213.1| RNA methyltransferase, TrmH family, group 3 [Granulicella
tundricola MP5ACTX9]
Length = 263
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 135/278 (48%), Gaps = 45/278 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ PV A+ + R YV L S +R+ K K++++ + G+ +
Sbjct: 2 EVLYGLHPVEEAIRSGGRRLE--YV-----LISRDRRDKGDDRLTKLVELCKLAGVRVSI 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K L V G HQG V + + I++L + D+ ++ALD V DP NLGA
Sbjct: 55 EPKDQLTRVAGTDAHQGAVAAVRERQFLAIEDLLAAKGNFDK-RFFLALDGVEDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA G GVVL + SAPLSGVV+K S+G+ E +++ N+++ L V
Sbjct: 114 LLRSADGAGVDGVVLPDRRSAPLSGVVAKTSAGASEHVKIARVTNLVRSLEQMKRANIWV 173
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
LG G+ A N +LVLGSEGTGL L +++C HL+RIP A
Sbjct: 174 LGLDERGTPDYTAFDFN-----SDCVLVLGSEGTGLHDLTKKTCDHLLRIP-------MA 221
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
G +V SLNVSVA V+++
Sbjct: 222 G---------------------SVSSLNVSVAGAVVMY 238
>gi|158312236|ref|YP_001504744.1| RNA methyltransferase [Frankia sp. EAN1pec]
gi|158107641|gb|ABW09838.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EAN1pec]
Length = 386
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/255 (32%), Positives = 125/255 (49%), Gaps = 40/255 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LY+ GL + + D + ++A G+++ + + +L+ + G PHQGL L
Sbjct: 161 LYIAGGLDF---DERIADAR------RLAGRAGLAVVDIGRFELDRLCGTAPHQGLALSV 211
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++ +A L VALD VTDP+NLGA++RSA FGASGVV+ + +A
Sbjct: 212 PPFEYAHPDDVL-AAAQAAAPGLVVALDGVTDPRNLGAVVRSAAAFGASGVVVPERRAAG 270
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG-QPT 492
++ K S+G+ + + N+ + L S AE+G V+G + + V L+E+ P
Sbjct: 271 VTAAAWKTSAGAAARLPVARAVNLTRTLRSFAESGLFVVGLAADGE-VSLDELQVATDPL 329
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
+LV+GSEG GL LV C VRIP AG+ VE
Sbjct: 330 VLVIGSEGKGLSRLVGECCDLRVRIP-------MAGQ---------------------VE 361
Query: 553 SLNVSVAAGVLLHHL 567
SLN VA G+ L +
Sbjct: 362 SLNAGVATGIALSEI 376
>gi|418066513|ref|ZP_12703875.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
metallireducens RCH3]
gi|373560384|gb|EHP86649.1| RNA methyltransferase, TrmH family, group 3 [Geobacter
metallireducens RCH3]
Length = 238
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 132/273 (48%), Gaps = 40/273 (14%)
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
+ AL K R F L+V +R D++ EK+LK+A G+ ++ K D++ +
Sbjct: 1 MEALRGKRRAF-ELFV---------SRDASDRR-MEKLLKLATEKGVPVRNRDKRDISRL 49
Query: 361 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFG 420
G HQG+ L + ++ + + L +ALD V DP NLGA+IRSA G
Sbjct: 50 CGTDHHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAACAG 109
Query: 421 ASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKA 480
A GV++ +A ++ V K+++G+ E + + N+ Q L E G+ + G + S+ +
Sbjct: 110 AHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADSAAS 169
Query: 481 VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG 540
++ G ++V+GSEG G+RPLV + C LV IP + G
Sbjct: 170 SLYDQDLSGN-VVIVIGSEGEGVRPLVRKKCDFLVAIP------LRGG------------ 210
Query: 541 SAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V SLN SVA GV+L ++ +++
Sbjct: 211 ----------VSSLNASVAGGVILFEVLRQRLA 233
>gi|116074617|ref|ZP_01471878.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
gi|116067839|gb|EAU73592.1| hypothetical protein RS9916_28824 [Synechococcus sp. RS9916]
Length = 548
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+ L + + + + L A +
Sbjct: 263 FLQLLREAKSSGVLVEEVTWARLGQLTGGAVHQGIALQTASADTLDLPTLVEGCAALGEP 322
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAI+RSA GA GVVL + SA L+G V+K ++G+LE + +
Sbjct: 323 PLLLALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARV 382
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + + G+RV+ G V L E P +V GSEG GL L R C L
Sbjct: 383 VNLNRSLETLKDAGYRVV-GLAGEGDVTLAEADLEGPLAIVTGSEGQGLSLLTRRHCDQL 441
Query: 515 VRIP 518
+RIP
Sbjct: 442 IRIP 445
>gi|390629508|ref|ZP_10257502.1| TrmH family tRNA/rRNA methyltransferase [Weissella confusa LBAE
C39-2]
gi|390485144|emb|CCF29850.1| TrmH family tRNA/rRNA methyltransferase [Weissella confusa LBAE
C39-2]
Length = 304
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 151/322 (46%), Gaps = 52/322 (16%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAAL 304
N RR + RR R +P +R R E + ++ A T E ++G + AL
Sbjct: 27 NNRRGADRR-FNDRDRQPRAKRAERPE----SDQEDIAAQT------EFVFGHHASVEAL 75
Query: 305 SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
+T E +++Q GL+ N +V+ +A+ G+ I++ K L+ + +
Sbjct: 76 KGET-EINKVWLQTGLTDKIRN----------EVMTLAKKRGLVIQDAPKAKLDELTDGQ 124
Query: 365 PHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGV 424
HQG+VL + I +L +A++D+A ++ LD + DP NLG+I+R+A G G+
Sbjct: 125 NHQGVVLSIAAYAYATIDDLFAKAAEKDEAPFFLVLDSIEDPHNLGSILRTADAAGVHGI 184
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN 484
++ + + L+ VV+K S+G++E + + N++Q + E G V G + K
Sbjct: 185 IIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDGK--DYR 242
Query: 485 EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQ 544
PT L++G+EG G+ PL++++ + IP G
Sbjct: 243 RWDAAGPTALIIGNEGKGISPLLKKTVDETLTIP-------MVGH--------------- 280
Query: 545 FQSFMAVESLNVSVAAGVLLHH 566
V+SLN SVAA +L++
Sbjct: 281 ------VQSLNASVAASLLIYQ 296
>gi|344233225|gb|EGV65098.1| hypothetical protein CANTEDRAFT_113482 [Candida tenuis ATCC 10573]
Length = 397
Score = 108 bits (271), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 141/308 (45%), Gaps = 70/308 (22%)
Query: 292 EGLYGVGPVLAALSAKTREFY-ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
E +YG VL+ L AK R+ Y L EG K +L M + G+ +
Sbjct: 120 EYVYGRHAVLSVLKAKKRQSYEKLVYTEG------------KTPITDILSMCKKYGVQTE 167
Query: 351 -ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI---------------------- 387
SK L+ + H G+ L LE+ + +L P
Sbjct: 168 LAASKQQLDFLTNKAVHNGVALATRKLELPTLAKLGPHDAETGTYNLDIWNELYNAQTTI 227
Query: 388 ------SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKA 441
S++E + L + LDE+TDPQN+GAIIRSAYFFG +V + N+A L +KA
Sbjct: 228 HKQVQRSSEESRNPLALYLDEITDPQNVGAIIRSAYFFGVDFIVTPSHNTARLGPAAAKA 287
Query: 442 SSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV--SSKAVP---LNEIPPGQPTILVL 496
++G+L+LM++ N ++F+ E+ W ++ V S+K + L++I P +LVL
Sbjct: 288 AAGALDLMDIYQVENGLKFIRDVKESPWALVTTEVKESTKTITHSQLSDILVDAPVLLVL 347
Query: 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNV 556
GSEG+G+R ++ VR+ N D+D V+SLNV
Sbjct: 348 GSEGSGVRTNIKNLSDFYVRLSKN-----------RTDSDA------------VVDSLNV 384
Query: 557 SVAAGVLL 564
S AA VL+
Sbjct: 385 SSAASVLI 392
>gi|375102830|ref|ZP_09749093.1| rRNA methylase, putative, group 3 [Saccharomonospora cyanea NA-134]
gi|374663562|gb|EHR63440.1| rRNA methylase, putative, group 3 [Saccharomonospora cyanea NA-134]
Length = 322
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 90/277 (32%), Positives = 133/277 (48%), Gaps = 46/277 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ +++R + +++A + GISI E
Sbjct: 75 EIIAGRNPVVEALRAGV-PATALYVA--LNIDADDR-------VTEAVRVAADKGISILE 124
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P +L + + L VALD VTDP+NLGA
Sbjct: 125 VPRDELDRKTNKAVHQGLGLQVPPFSYATPDQLLKAARESGDPPLLVALDGVTDPRNLGA 184
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV+L ++ SA ++ V + S+G+ + + N+ + L A G +
Sbjct: 185 VIRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLREWASEGLMI 244
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G GSV ++ ++ P ++V+GSEG GL LV +C + V IP + A
Sbjct: 245 AGLDADGSVDIDSMNIDV----DPLVVVIGSEGRGLSRLVRETCDYTVSIP------MAA 294
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
G VESLN SVA VLL
Sbjct: 295 G----------------------VESLNASVAGAVLL 309
>gi|442320499|ref|YP_007360520.1| RNA methyltransferase [Myxococcus stipitatus DSM 14675]
gi|441488141|gb|AGC44836.1| RNA methyltransferase [Myxococcus stipitatus DSM 14675]
Length = 268
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 130/274 (47%), Gaps = 38/274 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++GV PVL AL A+ E LYV EG + + ++L A G+ +++ S
Sbjct: 23 VFGVNPVLEALRARPDEVERLYVVEG---------QLAARASGELLSRAREAGVRVEKVS 73
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ + + HQG+VL+ + ++++ + + L V LD + DP NLGAII
Sbjct: 74 RERIAAMADGGVHQGVVLELRGFKYADLEDILDAAKASKKPPLVVVLDGIQDPHNLGAII 133
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA+ GA GVV+ + ++G V+KAS+G++E + N+ + L E G V
Sbjct: 134 RSAHALGAHGVVIAKDRAVQVTGTVAKASAGAVEHCLVARVVNISRALEELKEAGLWVAA 193
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V + P+ P LV+G+EG G+R V + C H +RIP G++
Sbjct: 194 ADVGATE-PMWSARLDGPLALVVGAEGPGVREGVLKHCDHRLRIP-------MTGQVG-- 243
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
SLN SV+AGVLL+ +
Sbjct: 244 -------------------SLNASVSAGVLLYEV 258
>gi|375091831|ref|ZP_09738119.1| RNA methyltransferase, TrmH family, group 3 [Helcococcus kunzii
ATCC 51366]
gi|374562718|gb|EHR34045.1| RNA methyltransferase, TrmH family, group 3 [Helcococcus kunzii
ATCC 51366]
Length = 244
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/205 (30%), Positives = 106/205 (51%), Gaps = 11/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+GL ++ +K++ +A G+ I++ K+ L+ + HQG+ L
Sbjct: 24 LYVQKGLKHNT----------IDKIINLANKKGVQIRQIDKNRLDKMSDFSNHQGVYLQT 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+ ++ E+ + D+ L + LDE+TDP NLGAIIR+A GA+GV++ +A
Sbjct: 74 KDYKYYQLDEIINYGKESDRDPLIIILDEITDPHNLGAIIRTAEAAGATGVIIPKHRAAQ 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ V K SSG+ M + N+ + ENG+ + G + + EI P
Sbjct: 134 VNHTVHKTSSGATSYMRVAMVTNINNTIEELKENGYWIYGADGHTDKL-YTEIDYSGPVG 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+G+EG G+ L + C L++IP
Sbjct: 193 IVIGNEGKGISRLTKTKCDDLIKIP 217
>gi|297193592|ref|ZP_06910990.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
25486]
gi|197718130|gb|EDY62038.1| tRNA/rRNA methyltransferase [Streptomyces pristinaespiralis ATCC
25486]
Length = 317
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 125/254 (49%), Gaps = 38/254 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLD 372
LYVQ+ N+ + ++ L++A G I+I E + +L+ + HQGLVL
Sbjct: 95 LYVQQ---FIDNDERVRE------ALQLATGRGNINIMEAPRPELDRLTNGLNHQGLVLQ 145
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E ++L + D+ + L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 146 VPPYEYAHPEDLAAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAA 205
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K S+G+ + N+ + L S + G V+G + + + G P
Sbjct: 206 GMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGETEVGDLEALGGPL 265
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C +LVRIP +P G A E
Sbjct: 266 VIVVGSEGKGLSRLVGETCDYLVRIP--MP-----------------GGA---------E 297
Query: 553 SLNVSVAAGVLLHH 566
SLN VAAGV+L+
Sbjct: 298 SLNAGVAAGVVLYE 311
>gi|118384277|ref|XP_001025291.1| RNA methyltransferase, TrmH family protein [Tetrahymena
thermophila]
gi|89307058|gb|EAS05046.1| RNA methyltransferase, TrmH family protein [Tetrahymena thermophila
SB210]
Length = 293
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 35/277 (12%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ P + AL + R + + + + + ++ A I +K
Sbjct: 38 VYGLNPTMIALHSNKRNIVEVIINQHV-------QSHLPPKISNIINTANAKKIPVKFVD 90
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ +V N+PHQ +V+ A PL+ ++ K S+D Q ++ + LD +TDPQN GAII
Sbjct: 91 REKLDRLVQNQPHQNVVIKAEPLKYLRTK-----SSDILQGNMILFLDRITDPQNFGAII 145
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN-NMMQFLVSSAENGWRVL 472
R+ + G VV+ + PL+ VSK SSG+LE+M++ YC + ++FL GW+V
Sbjct: 146 RTCQYLGVDNVVVDEFSRCPLNPTVSKTSSGALEVMDI-YCTPDPVEFLKDCQLRGWKVY 204
Query: 473 --GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
G + S + L ++ +LV+G+EG G+ P + + +V I +
Sbjct: 205 STGLNHSENQISLEKL--KDKIVLVMGNEGNGVDPKILKVSDKIVSIDQTL--------- 253
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ + + ++SLNV+ A +L+ ++
Sbjct: 254 --------YLNRPMVFPYTLIDSLNVNSATSILIQNI 282
>gi|124025638|ref|YP_001014754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
NATL1A]
gi|123960706|gb|ABM75489.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
NATL1A]
Length = 442
Score = 108 bits (271), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 3/185 (1%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQ 393
+ ++LK + G+ ++E S L + HQG+VL + + + +K L D A D
Sbjct: 210 FFQLLKDQKASGVLVEEVSWSRLGQLTNGAVHQGIVLQIAASKTLDLKNLIDACKAFGD- 268
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
+SL +ALD +TDPQNLGAIIRSA GA G++L + SA L+G V+K ++G+LE + +
Sbjct: 269 SSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVAR 328
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
N+ + L + G+ V+G + + L+EI P ++V+GSE G+ + R C
Sbjct: 329 VVNLNRSLEKLKDEGYTVVGLAEEGSST-LSEIKFQGPLVVVVGSEDKGISLITRRLCDQ 387
Query: 514 LVRIP 518
LVRIP
Sbjct: 388 LVRIP 392
>gi|330470431|ref|YP_004408174.1| TrmH family RNA methyltransferase [Verrucosispora maris AB-18-032]
gi|328813402|gb|AEB47574.1| RNA methyltransferase, trmh family, group 3 [Verrucosispora maris
AB-18-032]
Length = 373
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/274 (30%), Positives = 128/274 (46%), Gaps = 39/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L G PVL AL A+ ALY +G+ + ++++ A + GI+I E S
Sbjct: 131 LVGRNPVLEALRAQV-PATALYTAQGIDMDDR---------VNEIIRTAADRGIAILEIS 180
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +L+ + G HQG+ L P ++L +A E A L VALD VTDP+NLGA+I
Sbjct: 181 RAELDRMTGGVLHQGVGLQVPPFAYEPFEDLV-AAALEQSAPLLVALDGVTDPRNLGAVI 239
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FGA GV + + +A ++ + S+G+ + + N+ + L + + G+ V+G
Sbjct: 240 RSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFMVVG 299
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ + P ++V+GSEG GL LV ++C V IP
Sbjct: 300 LDADGETDLYDLEAAVGPLVVVVGSEGRGLSRLVGQTCDLTVSIP--------------- 344
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAA V L +
Sbjct: 345 -------------MVSEVESLNASVAAAVTLAEV 365
>gi|344303067|gb|EGW33341.1| hypothetical protein SPAPADRAFT_137264 [Spathaspora passalidarum
NRRL Y-27907]
Length = 436
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 100/360 (27%), Positives = 159/360 (44%), Gaps = 89/360 (24%)
Query: 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVP-KMVGEGLYGVGPVLAALSAKTREFYALYV 316
R E E +R R+E G T + S V E +YG V +AL A R LYV
Sbjct: 109 RQEMFEEKRNQRKEARGYTGNSSYSVSRAKYDSVYEYIYGTHSVKSALLANKRGLNTLYV 168
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPL 376
+ K+ K A N+ I ++ SK DLN++ N H G+VL+A+ L
Sbjct: 169 HNCQDPT-----------IVKLAKDAYNLRI-VERESKGDLNLLTKNGVHNGVVLEANSL 216
Query: 377 EMVKIK------------------------ELDPISADEDQAS----LWVALDEVTDPQN 408
+ I+ E P++ D+ L + LDE+TDPQN
Sbjct: 217 VIPYIESVGGSEDGQYKLSLIDDATNRPTEETRPVARANDKEESLHPLALYLDEITDPQN 276
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
+G+++R+A+F+G VVL +A L V +KAS+G+++ M + ++ ++FL S +NG
Sbjct: 277 MGSVLRTAFFYGVDFVVLPDHTTARLGPVANKASAGAMDQMNIYQTDSSLKFLQSVRDNG 336
Query: 469 WRVLGGS---------------------VSSKAVPLNEIPP---GQPTILVLGSEGTGLR 504
W ++ S + SK + L+E+ P +LV+GSEG G+R
Sbjct: 337 WSLVSTSGKPDEAQMADLKGKDGKIVENLKSKFIELSELRSLLHDGPVMLVIGSEGAGVR 396
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
++ +LV IP + Q+ V+SLNV VA G+++
Sbjct: 397 TNIKIKSNYLVGIP------------------------KLRQNDTLVDSLNVGVATGIII 432
>gi|377569716|ref|ZP_09798873.1| putative RNA methyltransferase [Gordonia terrae NBRC 100016]
gi|377533072|dbj|GAB44038.1| putative RNA methyltransferase [Gordonia terrae NBRC 100016]
Length = 316
Score = 108 bits (270), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 134/273 (49%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALY+ ++N+ + D++ E V K+A + ISI E
Sbjct: 74 EYVLGRNPVVECLRAGV-PATALYI------ATNS--EPDERVAEAV-KIAGDSAISILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K +L+ + N HQG+ L + +L + L VALD +TDP+NLGA
Sbjct: 124 VGKPELDRLSTNGMHQGIALQVPEYQYTHPDDLMAEAKASGTPPLLVALDNITDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ A+ SA ++ V + S+G+ + + N+ + L A+ G ++
Sbjct: 184 VIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWADAGAQL 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ PT++V+GSEG GL LV SC ++ IP AG+
Sbjct: 244 VGLDADGD-VTLDDYDGSGPTVIVVGSEGKGLSRLVRESCDSILSIP-------MAGD-- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 294 -------------------VESLNASVAAGVVL 307
>gi|433632674|ref|YP_007266302.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140070010]
gi|432164267|emb|CCK61719.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140070010]
Length = 322
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 132/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LPRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARVTNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGDTA-LDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|87124232|ref|ZP_01080081.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. RS9917]
gi|86167804|gb|EAQ69062.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. RS9917]
Length = 504
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 1/181 (0%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+L+ A+ G+ ++E + L + G HQG+ L + E + + L A + L
Sbjct: 217 LLREAKASGVLVEEVTWARLGQITGGAVHQGIALQTAAAETLDLPTLIEGCASLGEPPLL 276
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ALD +TDP NLGAI+RSA GA GVVL + SA L+G V+K ++G+LE + + N+
Sbjct: 277 LALDGLTDPHNLGAIVRSAEALGAHGVVLPQRRSAGLTGSVAKVAAGALEHLPVARVVNL 336
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ L S + G+RV+G + L E P ++V GSEG GL L R C L+RI
Sbjct: 337 NRSLESLKDAGYRVVGLAEEGDLT-LAEADLEGPLVVVTGSEGDGLSLLTRRHCDQLIRI 395
Query: 518 P 518
P
Sbjct: 396 P 396
>gi|213965128|ref|ZP_03393326.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
amycolatum SK46]
gi|213952242|gb|EEB63626.1| RNA methyltransferase, TrmH family, group 3 [Corynebacterium
amycolatum SK46]
Length = 314
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/271 (30%), Positives = 133/271 (49%), Gaps = 39/271 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PV+ L AK AL V +L ++N ++ ++ +++A + GI I+E
Sbjct: 70 VVGRNPVVECLHAKV-PAAALIV----ALGTDNDER-----LQESVRIANSRGIPIREVP 119
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+H+L+ + GN HQG+ L + +++L A + L V LD +TDP+NLGA+I
Sbjct: 120 RHELDTMTGNTMHQGIGLQIPSYKYSSVEDLIDSVAKTGEPGLIVCLDNITDPRNLGAVI 179
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RS FG GVV+ + SA ++GV + S+G+ + + NM++ L + G++++G
Sbjct: 180 RSVAAFGGHGVVIPERRSAAITGVAWRTSAGTAARLPVARATNMVRSLKQFQKAGYQIVG 239
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
L+ P ++V+GSEG GL LV +C ++ IP
Sbjct: 240 LDAGGDHT-LDTYDGTTPVVVVVGSEGKGLSRLVRDTCDTIMSIP--------------- 283
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ VESLN SVAAGV L
Sbjct: 284 -----------MTGW--VESLNASVAAGVTL 301
>gi|384083200|ref|ZP_09994375.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [gamma proteobacterium
HIMB30]
Length = 269
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 95/295 (32%), Positives = 141/295 (47%), Gaps = 51/295 (17%)
Query: 275 RTTWKEAAPSTVPKMVGEGLYGVGPVLAALS-AKTREFYALYVQEGLSLSSNNRKKKDKK 333
R + K+ AP V + G+ PV L A+ E ++++EG + + +D
Sbjct: 7 RQSKKQDAPGQV------AIVGIHPVRVVLGQARVSE---VWIREG----AREHRLRD-- 51
Query: 334 GYEKVLKMAENMGISIKETSKHDLNMVV-GNRPHQGLVLDASPLEMVKIKELDPISADED 392
+ +A++ G+ + + S D + V + HQG++ P +M L P+ D
Sbjct: 52 ----LTMIAKSQGVHVIDVSSRDFDDAVSADMNHQGVMAFTKPRDMEPENAL-PVLLDGI 106
Query: 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR 452
+ L + LD VTDP N GA +RSA FGA+ VV+ N+APL+ V K SSG+ EL+ +
Sbjct: 107 ENPLVLVLDGVTDPHNFGACLRSAEAFGAACVVVPKDNAAPLNQVARKTSSGASELIPVV 166
Query: 453 YCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
N+ + L ++G+ V+G + S A L + P LV+GSEG GLR L C
Sbjct: 167 KVTNLARCLRGLQQDGFWVVGAAGESTA-GLEQASHNGPLALVMGSEGAGLRRLTREVCD 225
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
LV IP +G I ESLNVSVA GVLL+ L
Sbjct: 226 ALVAIP-------MSGHI---------------------ESLNVSVATGVLLYDL 252
>gi|149053706|gb|EDM05523.1| similar to hypothetical protein FLJ22578 (predicted), isoform CRA_b
[Rattus norvegicus]
Length = 221
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 60/170 (35%), Positives = 94/170 (55%), Gaps = 8/170 (4%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L+GV P L AL A R L +Q G + R + +L++AE GI +
Sbjct: 48 ERLFGVSPCLLALRAARRHVARLLLQAGKAGLQGERAE--------LLRVAEARGIPVLR 99
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + G + HQG+ ++ S L E S+ +D LW+ L+ + DP+NLGA
Sbjct: 100 PRRQKLDALCGYQVHQGVCMEVSRLRPRPCDEAADTSSGDDPQQLWLVLEGIQDPRNLGA 159
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
++RSAYF G V+ +NS PL+ VVSKAS+G++E+M++ ++ FL
Sbjct: 160 VMRSAYFLGVDRVITSRRNSCPLTPVVSKASAGAMEVMDVFASPDLASFL 209
>gi|404257321|ref|ZP_10960648.1| putative RNA methyltransferase [Gordonia namibiensis NBRC 108229]
gi|403404315|dbj|GAB99057.1| putative RNA methyltransferase [Gordonia namibiensis NBRC 108229]
Length = 319
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 76/228 (33%), Positives = 114/228 (50%), Gaps = 29/228 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+ +K+A + ISI E K +L+ + N HQG+ L +L + L
Sbjct: 112 EAVKIAGDQAISILEVGKPELDRLSTNGMHQGIALQVPEYRYTHPDDLMADAKASGTPPL 171
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGA+IRS FG GVV+ A+ SA ++ V + S+G+ + + N
Sbjct: 172 LVALDNITDPRNLGAVIRSVAAFGGHGVVIPARRSASVTAVAWRTSAGAAARLPVARATN 231
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + L A++G +++G V L++ PT++V+GSEG GL LV SC ++
Sbjct: 232 LTRTLKDWADSGAQLVGLDAGGD-VTLDDYDGTGPTVIVVGSEGKGLSRLVRESCDSILS 290
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
IP AG+ VESLN SVAAGV+L
Sbjct: 291 IP-------MAGD---------------------VESLNASVAAGVVL 310
>gi|227503950|ref|ZP_03933999.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
gi|227199472|gb|EEI79520.1| possible tRNA/rRNA methyltransferase [Corynebacterium striatum ATCC
6940]
Length = 315
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 134/278 (48%), Gaps = 40/278 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK +LY+ +G + D + E V +A + I
Sbjct: 66 KETAEMVVGRNPVVECLHAKV-PATSLYIVQGT--------RNDARLSEAV-AIANSRNI 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H+++ + GN HQG+ L P + EL + D + ++V LD +TDP+
Sbjct: 116 PILEIQRHEMDRMTGNGMHQGIGLQIPPYKYADFHELMDRAKDAGEPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + + +
Sbjct: 176 NLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVARVTNVTRTVQEFQQA 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++V+G + L+ G+ P ++V+GSEG G+ LV +C ++ IP +T
Sbjct: 236 GYQVVGLDAGGEHT-LDTYTGGKDPVVIVIGSEGKGISRLVRENCDVIMSIP------MT 288
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A VESLN SVAAG +L
Sbjct: 289 A----------------------WVESLNASVAAGAVL 304
>gi|417932737|ref|ZP_12576075.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK182B-JCVI]
gi|340774373|gb|EGR96860.1| RNA methyltransferase, TrmH family, group 3 [Propionibacterium
acnes SK182B-JCVI]
Length = 214
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 116/232 (50%), Gaps = 32/232 (13%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L + + GI++ + ++ +L+ + G HQG+ L E + +L + L
Sbjct: 3 EILTFSADHGITLMQATRGELDRMTGGSNHQGVALRLPEYEYATVNDLITAGTQTYRGGL 62
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD+VTDP+NLGAIIRSA FGA GV++ ++ SA ++ K S+G+ + + N
Sbjct: 63 VVALDKVTDPRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATN 122
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHL 514
+ Q L A GW ++G ++ +A PG P ++V+GSEG GL L +SC L
Sbjct: 123 LNQALGKFAAAGWMIVG--LAGEADSDLASAPGLDGPLVIVVGSEGEGLARLTRQSCDVL 180
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
IP + +D VESLN SVAA V L+
Sbjct: 181 ASIP--------------ISSD--------------VESLNASVAASVALYE 204
>gi|291297886|ref|YP_003509164.1| RNA methyltransferase TrmH family, group 3 [Stackebrandtia
nassauensis DSM 44728]
gi|290567106|gb|ADD40071.1| RNA methyltransferase, TrmH family, group 3 [Stackebrandtia
nassauensis DSM 44728]
Length = 339
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 81/226 (35%), Positives = 116/226 (51%), Gaps = 12/226 (5%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L G PV+ AL A ALYV G L R+ +++A N GISI E S
Sbjct: 98 LVGRNPVVEALRAHV-PGTALYVVNGTELDDRIRES---------IRLAGNRGISILEVS 147
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K +L+ + HQGL L P + ++ + + Q L VALD VTDP+NLGA I
Sbjct: 148 KSELDRLCQGALHQGLGLQVPPFHYEEYADVLAAAGEHPQPPLLVALDGVTDPRNLGATI 207
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FGA GVV+ + +A ++ +AS+G+ + + N+ + + + + G V G
Sbjct: 208 RSAAAFGAHGVVVPQRRAAGMTATAWRASAGAAARLPIAKATNLTRAIQQAQQAGLLVAG 267
Query: 474 GSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ + L ++P P +LV+GSEG GL LV SC VRIP
Sbjct: 268 LDADGE-IDLFDLPAAVDPLMLVVGSEGRGLSRLVGESCDLRVRIP 312
>gi|320031639|gb|EFW13599.1| SpoU rRNA methylase [Coccidioides posadasii str. Silveira]
Length = 472
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 99/333 (29%), Positives = 147/333 (44%), Gaps = 72/333 (21%)
Query: 276 TTWKEAAPSTVPKM--VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK 333
T P +P M V E +YG PV +A+ A R+ YALY+ E + +
Sbjct: 121 TKVSRVPPPAIPYMSAVSEFIYGFHPVRSAIRAGRRKIYALYLCERPT------NQLSGS 174
Query: 334 GYEKVLKMAENMGISIKETSK---HDLNMV---VGNRPHQGLVLDASPLE---------- 377
G + K+A G +K S L+ V V + P + +P
Sbjct: 175 GLNSLQKLAVTAGAKVKIVSSEWSQALSRVCKEVASLPVTNFNVKVAPQSKEEAAVNGTS 234
Query: 378 -MVKIKELDPISADEDQAS------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
++ + L S D+ + + LD + DP NLGAI+RSAY+FGA V ++N
Sbjct: 235 GLIPLTSLRQDSYDDHRTQHNPRYPFTLLLDGIVDPHNLGAILRSAYYFGADAVAFSSRN 294
Query: 431 SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS--------------V 476
SAPLS VV K+SSG+ E + L ++ + F+ +S NGWR V
Sbjct: 295 SAPLSPVVMKSSSGAAEHIPLISIHDTVSFIDASRRNGWRFFAAEPPASVAPDSKNKNIV 354
Query: 477 SSKAVPLNEIPPGQPTILVLGSEGTGL-RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
SSK +P NE+ P +L+LG+EG GL + L ++ +V VD I D
Sbjct: 355 SSKNLP-NEL-QNYPCVLMLGNEGDGLSKELKSKADASVV-------VDCPRKHIVD--- 402
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLNV+VA+G+L +
Sbjct: 403 --------------EVDSLNVAVASGILCEAFM 421
>gi|340628545|ref|YP_004746997.1| putative tRNA/rRNA methyltransferase [Mycobacterium canettii CIPT
140010059]
gi|433628722|ref|YP_007262351.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140060008]
gi|433643772|ref|YP_007289531.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140070008]
gi|340006735|emb|CCC45923.1| putative tRNA/rRNA methyltransferase [Mycobacterium canettii CIPT
140010059]
gi|432156328|emb|CCK53586.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140060008]
gi|432160320|emb|CCK57643.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140070008]
Length = 322
Score = 108 bits (270), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGADSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|72382102|ref|YP_291457.1| RNA methyltransferase TrmH [Prochlorococcus marinus str. NATL2A]
gi|72001952|gb|AAZ57754.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
NATL2A]
Length = 416
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 107/185 (57%), Gaps = 3/185 (1%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQ 393
+ ++LK + G+ ++E S L + HQG+VL + + + +K L D A D
Sbjct: 184 FFQLLKDQKASGVLVEEVSWSRLGQLTNGAVHQGIVLQIAASKTLDLKNLIDACKAFGD- 242
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
+SL +ALD +TDPQNLGAIIRSA GA G++L + SA L+G V+K ++G+LE + +
Sbjct: 243 SSLLLALDGLTDPQNLGAIIRSAEALGAQGLILPQRRSAGLTGSVAKVAAGALEHLPVAR 302
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
N+ + L + G+ V+G + + L+EI P ++V+GSE G+ + R C
Sbjct: 303 VVNLNRSLEKLKDEGYTVVGLAEEGSST-LSEIKFQGPLVVVVGSEDKGISLITRRLCDQ 361
Query: 514 LVRIP 518
LVRIP
Sbjct: 362 LVRIP 366
>gi|118473323|ref|YP_890295.1| TrmH family RNA methyltransferase [Mycobacterium smegmatis str. MC2
155]
gi|399990291|ref|YP_006570641.1| TRNA/RRNA methyltransferase [Mycobacterium smegmatis str. MC2 155]
gi|254806534|sp|A0R557.1|Y6073_MYCS2 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
MSMEG_6073/MSMEI_5913
gi|118174610|gb|ABK75506.1| RNA methyltransferase, TrmH family protein, group 3 [Mycobacterium
smegmatis str. MC2 155]
gi|399234853|gb|AFP42346.1| TRNA/RRNA methyltransferase [Mycobacterium smegmatis str. MC2 155]
Length = 314
Score = 108 bits (270), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L AK ALYV G D++ E V ++A + GISI E
Sbjct: 72 ELVLGRNPVLECLRAKV-PATALYVALG--------TDADERVTESV-QIAADRGISILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + + HQGL L P +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRTDLDRMSNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F GVV+ + SA ++ V + S+G+ + + N+ + L S A+ G ++
Sbjct: 182 IVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQI 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ PT++V+GSEG GL LV C +V IP P
Sbjct: 242 VGLDAGGDTT-LDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 292 -------------------TESLNASVAAGVVL 305
>gi|403730395|ref|ZP_10948973.1| putative RNA methyltransferase [Gordonia rhizosphera NBRC 16068]
gi|403202583|dbj|GAB93304.1| putative RNA methyltransferase [Gordonia rhizosphera NBRC 16068]
Length = 317
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 97/341 (28%), Positives = 153/341 (44%), Gaps = 39/341 (11%)
Query: 224 KNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAP 283
K +G + G + S +RR R + Y +++ + T P
Sbjct: 6 KRKGAVRKSGSKKGQTVGSGGQRRRGLEGRGATPKAVDRPYHPAHKRAKAASKTPAGRGP 65
Query: 284 STVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE 343
T E + G PVL L A ALY+ ++N+ + D++ E V K+A
Sbjct: 66 RTRKDEGPEHVLGRNPVLECLRAGV-PATALYI------ATNS--EPDERVAEAV-KIAG 115
Query: 344 NMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEV 403
+ G+++ E K +L+ + N HQG+ L +L + L VALD +
Sbjct: 116 DKGVAVLEVGKPELDRLSANGLHQGIALQVPEFSYAHPDDLMRDALASGAPPLLVALDNI 175
Query: 404 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
TDP+NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + L
Sbjct: 176 TDPRNLGAVIRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVAQAPNLTRTLKD 235
Query: 464 SAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
A +G +++G V L+E PT++V+GSEG GL LV +C ++ IP
Sbjct: 236 WASSGAQLVGLDTEGD-VTLDEYDGTGPTVIVVGSEGKGLSRLVRETCDSILSIP----- 289
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
AG+ VESLN SVAAGV+L
Sbjct: 290 --MAGD---------------------VESLNASVAAGVVL 307
>gi|403738465|ref|ZP_10951066.1| putative rRNA methyltransferase [Austwickia chelonae NBRC 105200]
gi|403191115|dbj|GAB77836.1| putative rRNA methyltransferase [Austwickia chelonae NBRC 105200]
Length = 322
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 99/358 (27%), Positives = 157/358 (43%), Gaps = 62/358 (17%)
Query: 224 KNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAA- 282
+ QG + G + A S N+RR + K T K E + +++ + + + A
Sbjct: 6 RRQGAIRKAGSKKGATVGSGGNRRRGL---EGKGPTPKAEDRPYHKAYKAAQRATTQGAR 62
Query: 283 ---------PSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK 333
P K E + G V+ AL A+ +YV + S++R K+
Sbjct: 63 RPSAANPQRPVRRTKGSTEMVAGRNSVVEALRAQV-PVTTMYVAS--RIDSDDRVKE--- 116
Query: 334 GYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQ 393
LK+A G+ + ET + +L+ + HQGL L P ++L + +
Sbjct: 117 ----ALKLAHERGLPVLETPRTELDRLTDGAIHQGLALQIPPYSYADPRDL--MEMEIPG 170
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
A L VALD +TDP+NLGAIIRS FG GVV+ + SA ++ K S+G+ + +
Sbjct: 171 APLIVALDGITDPRNLGAIIRSVAAFGGHGVVVPERRSAGMTAAAWKTSAGAAARIPVAQ 230
Query: 454 CNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
N+ + L + G+ V+G G V + L ++P ++V+GSEG GL LV
Sbjct: 231 AGNLTRTLEGYRKAGFFVIGLDMDGEVELPDLQLTDVP----LVIVVGSEGKGLSRLVRE 286
Query: 510 SCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP A+ESLN +AAGV L+ +
Sbjct: 287 TCDQVVSIP-----------------------------ISAIESLNAGIAAGVALYAV 315
>gi|399037681|ref|ZP_10734356.1| rRNA methylase, putative, group 3 [Rhizobium sp. CF122]
gi|398064703|gb|EJL56379.1| rRNA methylase, putative, group 3 [Rhizobium sp. CF122]
Length = 296
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 142/288 (49%), Gaps = 31/288 (10%)
Query: 237 EAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYG 296
++ D+ + R + R + R E P R+ G WK P+ P+ V LYG
Sbjct: 15 KSAKDTHYATLRRAHRDSKRERGEIPTPPPQKRRR--GAEDWK--PPTLAPEQVY--LYG 68
Query: 297 VGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHD 356
+ V AAL K R+ L V + ++ R + D A+ +GI ++ + HD
Sbjct: 69 LHTVRAALDNKERKNVKLSVTQ----NALARLEID----------ADQLGIPVEIVAPHD 114
Query: 357 LNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
++ ++G + HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RS
Sbjct: 115 IDKLLGPDAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRS 167
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A F A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G
Sbjct: 168 AVAFNAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFFTIGLD 227
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S PL G LVLGSEG GLR + + L R+ PG I
Sbjct: 228 -SEGPAPLEGTFSGDKVALVLGSEGKGLRQKTRETVSALARLEMPGAI 274
>gi|289571821|ref|ZP_06452048.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
gi|289545575|gb|EFD49223.1| conserved hypothetical protein [Mycobacterium tuberculosis T17]
Length = 316
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|323703775|ref|ZP_08115413.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
nigrificans DSM 574]
gi|333922427|ref|YP_004496007.1| TrmH family RNA methyltransferase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|323531244|gb|EGB21145.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
nigrificans DSM 574]
gi|333747988|gb|AEF93095.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
carboxydivorans CO-1-SRB]
Length = 252
Score = 108 bits (269), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 117/232 (50%), Gaps = 29/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++K+A I I+ K L+ +V PHQG++ A+P V I+++ ++ + Q
Sbjct: 46 EIIKLAREKNIPIQTVDKTHLDKLVAGTPHQGIIAYAAPKGYVDIEDILSVAKERGQDPF 105
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP NLGAIIR+ GA G+++ + + L+ V++AS+G++E + + N
Sbjct: 106 IVMLDEINDPHNLGAIIRTVDAAGAHGIIIPRRRAVALTATVARASAGAVEYVPVARVTN 165
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ Q + E G V+G + V + G P +LV+G EG GL L++ C LVR
Sbjct: 166 LDQTIRQLKELGLWVVGADMDGPEVYWDAKLTG-PLLLVIGGEGKGLGRLIKERCDMLVR 224
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+P AG V SLN SVAA +L++ ++
Sbjct: 225 LP-------MAGH---------------------VGSLNASVAAALLVYEVI 248
>gi|433636688|ref|YP_007270315.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140070017]
gi|432168281|emb|CCK65815.1| Putative tRNA/rRNA Methyltransferase [Mycobacterium canettii CIPT
140070017]
Length = 317
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVTRAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LPRADLDRMTANHMHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|114567860|ref|YP_755014.1| tRNA/rRNA methyltransferase YacO [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|114338795|gb|ABI69643.1| conserved hypothetical tRNA/rRNA methyltransferase yacO
[Syntrophomonas wolfei subsp. wolfei str. Goettingen]
Length = 248
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/283 (27%), Positives = 140/283 (49%), Gaps = 42/283 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G+ V AL + R Y +Y Q R+++DK+ E++L +A + ++
Sbjct: 3 ELVFGINAVSEALKGQ-RRVYKIYAQ---------RERQDKR-LEEILTLAREKQLKLQY 51
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE-LDPISADEDQASLWVALDEVTDPQNLG 410
K ++ + + HQG++ + + + L+ + A +++ + LD + DPQNLG
Sbjct: 52 LEKKKMDELCEGK-HQGIIAEVERYPYADLGQVLEKLQAQKEKPPFLLLLDGIEDPQNLG 110
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AIIR+A G G+++ + SA ++ VS+ S+G++E M + NN++ + + G+
Sbjct: 111 AIIRTAECAGVDGIIIPSHKSAEVNPTVSRVSAGAVEHMAIIRENNLVNTIKYLKQEGFW 170
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
VLG ++ N P PT LV+G EG G+R LV +C LVRIP
Sbjct: 171 VLGADAKARQSYFNTSIPS-PTALVIGGEGQGIRRLVRENCDILVRIP------------ 217
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
F + SLN SVAA +L++ ++ +++
Sbjct: 218 ----------------MFGQLNSLNASVAAALLIYEVLRQRLN 244
>gi|386857631|ref|YP_006261808.1| RNA methyltransferase TrmH, group 3 [Deinococcus gobiensis I-0]
gi|380001160|gb|AFD26350.1| RNA methyltransferase TrmH, group 3 [Deinococcus gobiensis I-0]
Length = 238
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 112/225 (49%), Gaps = 31/225 (13%)
Query: 343 ENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDE 402
E G ++ S+ +L+ +VG HQG+V + + L + ++ + + + L V LD
Sbjct: 36 EATGARVRWASRIELDQMVGTTQHQGIVAEVADLAWATVDDILDRAEQKGEPLLIVLLDG 95
Query: 403 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLV 462
+TDP+N GAIIRSA GA GVV+ + SAPLS VV+K ++G+ + + N+ + +
Sbjct: 96 ITDPRNFGAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATSYLPVAQTKNLPRLID 155
Query: 463 S-SAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNI 521
EN W + G+ A L LV+G+EG GLR LV C LVRIP
Sbjct: 156 QLKEENVW--VYGAAGEAAQDLGRTDFSGKLALVIGAEGEGLRRLVREKCDALVRIP--- 210
Query: 522 PVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
T G+ V+SLN SVAAG+LL+
Sbjct: 211 ----TRGQ---------------------VQSLNASVAAGILLYE 230
>gi|19553838|ref|NP_601840.1| rRNA methylase [Corynebacterium glutamicum ATCC 13032]
gi|62391479|ref|YP_226881.1| rRNA methyltransferase TRMH family [Corynebacterium glutamicum ATCC
13032]
gi|418246318|ref|ZP_12872715.1| rRNA methyltransferase TRMH family protein [Corynebacterium
glutamicum ATCC 14067]
gi|21325412|dbj|BAC00034.1| rRNA methylases [Corynebacterium glutamicum ATCC 13032]
gi|41326820|emb|CAF21302.1| PUTATIVE RRNA METHYLTRANSFERASE TRMH FAMILY [Corynebacterium
glutamicum ATCC 13032]
gi|354509863|gb|EHE82795.1| rRNA methyltransferase TRMH family protein [Corynebacterium
glutamicum ATCC 14067]
gi|385144732|emb|CCH25771.1| rRNA methylase [Corynebacterium glutamicum K051]
Length = 313
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 132/273 (48%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A+ ALYV EG ++N+ + + + A + + E
Sbjct: 69 ELVVGRNPVLECLHARV-PATALYVAEG---AANDER------LSEAVHTAAGRNLPVLE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+K +L+ + GN HQG+ L P E + +L +A + ++V LD +TDP+NLGA
Sbjct: 119 VNKLELDRMTGNGMHQGIGLAIPPYEYADVHDLIANAAASKKPGMFVILDNITDPRNLGA 178
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG +GV++ + SA ++ V + S+G+ + + NM + + +NG++V
Sbjct: 179 VIRSVGAFGGNGVIIPERRSASVTAVAWRTSAGTAARVPVAKETNMTRVVKEFQQNGYQV 238
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ ++V+GSEG G+ LV +C ++ IP T G
Sbjct: 239 VGLDAGGDHT-LDTYDGTDNVVIVVGSEGKGISRLVRENCDTIMSIP-------TEG--- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 288 ------------------WVESLNASVAAGVVL 302
>gi|33861505|ref|NP_893066.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
gi|33634082|emb|CAE19407.1| tRNA/rRNA methyltransferase [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 428
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 105/181 (58%), Gaps = 1/181 (0%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+LK ++ G+ I+E L+ + HQG+ L + E + +++L IS + +
Sbjct: 225 LLKDLKSKGVLIEEVPWSRLSQLTSGAVHQGVALQHASTESISLEKLIDISKSKSSNPII 284
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
VALD VTDP N GAIIRSA F G+++ + SA L+G V+K ++G+LE + + N+
Sbjct: 285 VALDGVTDPHNFGAIIRSAEAFDCKGIIVPQRRSAGLTGTVAKVAAGALEHIPVSRVVNL 344
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ + + G+ ++G S + VP++E P ++++G+E G+ LV++ C +L++I
Sbjct: 345 NRAIDELKKKGFIIIGLSGDGQ-VPISEFKEKAPVVVIVGAENKGISLLVQKKCDYLLKI 403
Query: 518 P 518
P
Sbjct: 404 P 404
>gi|116251522|ref|YP_767360.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium
leguminosarum bv. viciae 3841]
gi|115256170|emb|CAK07251.1| putative 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB
[Rhizobium leguminosarum bv. viciae 3841]
Length = 296
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 138/284 (48%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQAQKRKR--GGEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D E +GI + S +++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEVD----------VEALGIPFEIVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------ESPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G+ LVLGSEG GLR + L R+ PG+I
Sbjct: 231 PAPLEGTFSGEKVALVLGSEGKGLRQKTRETVNALARLDMPGSI 274
>gi|358458289|ref|ZP_09168500.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. CN3]
gi|357078420|gb|EHI87868.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. CN3]
Length = 392
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/206 (34%), Positives = 108/206 (52%), Gaps = 12/206 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYV GL + + K+A G+S+ + + +L+ + G PHQGL L
Sbjct: 166 LYVANGLEFDERLTEAR---------KLAGRAGMSVVDVGRAELDRLCGVAPHQGLALVI 216
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P + +L A + L VALD VTDP+NLGA++RSA FGA GV + + +A
Sbjct: 217 PPYQYAHPDDLLK-RARAATSGLLVALDGVTDPRNLGAVVRSAAAFGAQGVAVPERRAAG 275
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG-QPT 492
++ K S+G+ + + N+ + L S A+ G V+G + + V L+++ P
Sbjct: 276 MTAAAWKTSAGAAARLPIARATNLTRTLRSFADGGLVVVGLAADAD-VSLDDLEAATDPL 334
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIP 518
+LV+GSEG GL LV +C LVRIP
Sbjct: 335 VLVIGSEGRGLSRLVGETCDLLVRIP 360
>gi|227834034|ref|YP_002835741.1| rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
gi|262183480|ref|ZP_06042901.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
gi|227455050|gb|ACP33803.1| putative rRNA methylase [Corynebacterium aurimucosum ATCC 700975]
Length = 316
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 80/278 (28%), Positives = 131/278 (47%), Gaps = 40/278 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV+ L AK +LY+ +G + D + E V M I
Sbjct: 66 KETAEMVVGRNPVIECLHAKV-PATSLYIVQGT--------RNDARLSEAV-AMCNTRNI 115
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
I E +H+++ + GN HQG+ L P + + +L + D + ++V LD +TDP+
Sbjct: 116 PILEVQRHEMDRMTGNGMHQGIGLQIPPYKYADVHDLMDRARDAQEPGMFVILDNITDPR 175
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA+IRS FG GV++ + SA ++ V + S+G+ + + N+ + + +
Sbjct: 176 NLGAVIRSVAAFGGHGVIIPERRSASVTAVAWRTSAGTAARLPVARVTNVTRTVQDFQKA 235
Query: 468 GWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++V+G + L+ G P ++V+GSEG G+ LV +C ++ IP
Sbjct: 236 GYQVVGLDAGGEHT-LDTYNGGTDPVVIVIGSEGKGISRLVRENCDAIMSIP-------- 286
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ D VESLN SVAAG +L
Sbjct: 287 ---MTDW-----------------VESLNASVAAGAVL 304
>gi|449480394|ref|XP_002196774.2| PREDICTED: rRNA methyltransferase 1, mitochondrial [Taeniopygia
guttata]
Length = 251
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 46/221 (20%)
Query: 367 QGLVLDASPLEMVKIKELDPISADEDQAS---------LWVALDEVTDPQNLGAIIRSAY 417
QG+ L+A+PL + +++ A+E Q LW+ L+ + DP NLGA++RSAY
Sbjct: 56 QGVCLEAAPLPLRSLRD-----AEEPQLGHGERGNRQLLWLVLEHIQDPMNLGALLRSAY 110
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVS 477
F G VV NS PL+ VVSKAS+G++E+ ++ +++ FL + + GW V+ G+VS
Sbjct: 111 FLGVDRVVATRGNSCPLTPVVSKASAGAMEVFDVYGTDDLQGFLKAKSAEGWEVV-GTVS 169
Query: 478 S----KAVPL---NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
+ VP+ +E +P I+V+GSEG GL ++ C ++ IP
Sbjct: 170 RPEDVEDVPVISCSEFQWDKPVIVVIGSEGEGLSLETQQQCQRMLAIP------------ 217
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
G A ++SLNVSVAAG+LLH + +
Sbjct: 218 --------PGRALH----PGLDSLNVSVAAGILLHSICSQK 246
>gi|254387149|ref|ZP_05002420.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
gi|194345965|gb|EDX26931.1| tRNA/rRNA methyltransferase [Streptomyces sp. Mg1]
Length = 323
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 128/279 (45%), Gaps = 37/279 (13%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
PK E + G PV AL LYVQ+ + D++ E + AE
Sbjct: 70 PKGTSEMVVGRNPVFEALRDGV-PASTLYVQQFID--------NDERVREALQLAAERGN 120
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
I++ E + +L+ + HQGLVL P E ++L + D + L VALD VTDP
Sbjct: 121 INLMEAPRPELDRLTNGLNHQGLVLQVPPYEYAHPEDLTAAAYDNGEDPLIVALDGVTDP 180
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGAI+RS FG GVV+ + +A ++ K S+G+ + N+ + L +
Sbjct: 181 RNLGAIVRSVSAFGGHGVVIPERRAAGMTAGAWKTSAGTAARTPVSRVTNLTRALQDYKK 240
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G ++G + + P ++V+GSEG GL LV +C +LVRIP +P
Sbjct: 241 AGITIVGLAAEGTHTVNDLAELAGPVVIVVGSEGKGLGRLVGENCDYLVRIP--MP---- 294
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
G A ESLN VAAGV+L+
Sbjct: 295 -------------GGA---------ESLNAGVAAGVVLY 311
>gi|153005091|ref|YP_001379416.1| RNA methyltransferase [Anaeromyxobacter sp. Fw109-5]
gi|152028664|gb|ABS26432.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
Fw109-5]
Length = 245
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 112/226 (49%), Gaps = 12/226 (5%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ PV L A L++ EG + + + ++ ++ G ++
Sbjct: 4 VYGLNPVREVLRAGGEGLSELWLAEGGTRGA---------AFGELERLGRAAGAKVRSAP 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ + G HQG+V + ++++L + + L V LD V DP NLGAII
Sbjct: 55 RAKLDRLAGTDRHQGVVAMVADFRYAEVEDLLAAARASGRPPLVVVLDGVEDPHNLGAII 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA+ GA GVV+ + ++ V+KAS+G++E + N+ + L + E G W V
Sbjct: 115 RSAHALGAHGVVIPKDRAVGVTPAVAKASAGAVERCPVARVTNVSKTLEALKEAGIWSV- 173
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ PL + P LVLGSEG GLRPLV ++C H RIP
Sbjct: 174 -ALAADGDAPLGAVDLTGPIALVLGSEGEGLRPLVRKTCDHSARIP 218
>gi|262370090|ref|ZP_06063417.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
johnsonii SH046]
gi|381196836|ref|ZP_09904177.1| tRNA/rRNA methyltransferase [Acinetobacter lwoffii WJ10621]
gi|381196861|ref|ZP_09904202.1| tRNA/rRNA methyltransferase [Acinetobacter lwoffii WJ10621]
gi|381196886|ref|ZP_09904227.1| tRNA/rRNA methyltransferase [Acinetobacter lwoffii WJ10621]
gi|381196911|ref|ZP_09904252.1| tRNA/rRNA methyltransferase [Acinetobacter lwoffii WJ10621]
gi|262315129|gb|EEY96169.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
johnsonii SH046]
Length = 249
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 82/270 (30%), Positives = 127/270 (47%), Gaps = 38/270 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK FY ++ E L L+ K +D + ++VL++AE GIS+++T + L
Sbjct: 2 AKPEYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQTGRDRLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P + K+L+ + + L + LD+VTDP NLGA IR+A
Sbjct: 62 KMAGLPFHQGVVAAVRPNPVFNEKDLEAL-LKQSPNCLLLGLDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS-SAENGWRVLGGSVS 477
G V++ SA L+ K ++G E ++ N+ + L E RV+G +
Sbjct: 121 MGVEAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAQIKDEFNVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+PL + G +V+G+E TGLRP+ + C V IP AG +
Sbjct: 181 EKALPLQQFDFTGTAVCVVMGAEDTGLRPITQSQCDQTVYIP-------MAGNL------ 227
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
+SLNVSVA G+ L+
Sbjct: 228 ---------------QSLNVSVATGMALYE 242
>gi|443294499|ref|ZP_21033593.1| tRNA/rRNA methyltransferase [Micromonospora lupini str. Lupac 08]
gi|385882347|emb|CCH21744.1| tRNA/rRNA methyltransferase [Micromonospora lupini str. Lupac 08]
Length = 377
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 128/276 (46%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PVL AL A+ ALYV +G+ + ++++ A + GI+ E
Sbjct: 133 ELLVGRNPVLEALRAQV-PATALYVAQGIDMDDR---------INEIIRTAADRGIANLE 182
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + G HQG+ L P +++ +A E QA L VALD VTDP+NLGA
Sbjct: 183 ISRAELDRMTGGVLHQGVGLQVPPFAYEPFEDMV-AAALEQQAPLLVALDGVTDPRNLGA 241
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV + + +A ++ + S+G+ + + N+ + L + + G+ V
Sbjct: 242 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACRDAGFMV 301
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + P ++V+GSEG GL LV +C V IP
Sbjct: 302 VGLDADGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIP------------- 348
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAA V L +
Sbjct: 349 ---------------MISEVESLNASVAAAVTLAEV 369
>gi|302872439|ref|YP_003841075.1| TrmH family RNA methyltransferase [Caldicellulosiruptor obsidiansis
OB47]
gi|302575298|gb|ADL43089.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
obsidiansis OB47]
Length = 253
Score = 108 bits (269), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/227 (31%), Positives = 116/227 (51%), Gaps = 16/227 (7%)
Query: 294 LYGVGPVLAAL--SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ G PV AL AK E Y SN+ K K+ +++++ G+ +K
Sbjct: 4 IEGKNPVKEALKSGAKITEVYI----------SNSAKDKETA---QIIELCRQSGVVVKF 50
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K+ ++ + + QG++ A E ++ + ++A V LD +TDPQN G+
Sbjct: 51 VDKNKIDKMAQTKNPQGVIAIAQEFEYCDTDDILFEARQREEAPFLVLLDGITDPQNFGS 110
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA+ GA G+V+ A+NS P++ V KAS+G++E M++ N+ + + E G V
Sbjct: 111 IIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAIEYMKIARVVNLRRTIEELKEKGIWV 170
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
SS P+ E PT +V+GSEG G+ LV+ L++IP
Sbjct: 171 FAADASSPK-PVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIP 216
>gi|338738540|ref|YP_004675502.1| rRNA methylase [Hyphomicrobium sp. MC1]
gi|337759103|emb|CCB64930.1| rRNA methylase [Hyphomicrobium sp. MC1]
Length = 239
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 85/273 (31%), Positives = 133/273 (48%), Gaps = 48/273 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ V AAL R L + E + R+ ++ G K ++ S
Sbjct: 5 LFGLHAVEAALKNPNRRILRLLLTE-----NAERRIREAIGEIKP---------PVEHVS 50
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
DL+ ++G + HQG L+ PL ++L A + LD+VTDP N+GAI
Sbjct: 51 PRDLDKLLGADTVHQGAALETEPLPEPDWRDL----AASANGRPLIVLDQVTDPHNVGAI 106
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RS+ FGASG+V+ ++S PL+GV++K++SG+LEL+ + N+ + L E G+ ++
Sbjct: 107 LRSSAVFGASGLVMTRRHSPPLNGVLAKSASGALELIPVALVANLARALDELKEAGFTIV 166
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G + + + +PT LV+GSEG GLR L ++C + RI DD
Sbjct: 167 GLDGQGEQT-IEALDWSKPTALVMGSEGKGLRELTRKTCDCVARI-----------TTDD 214
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
A+ SLNVS AA + LH
Sbjct: 215 -----------------ALASLNVSNAAAIALH 230
>gi|289759737|ref|ZP_06519115.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
gi|289715301|gb|EFD79313.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T85]
Length = 280
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 26 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 75
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 76 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 134
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 135 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 194
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 195 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 240
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 241 ---------MAAQ------AESLNASVAAGVVLAEI 261
>gi|15610715|ref|NP_218096.1| Possible tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
H37Rv]
gi|148663443|ref|YP_001284966.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis H37Ra]
gi|148824785|ref|YP_001289539.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis F11]
gi|253800620|ref|YP_003033621.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|254234152|ref|ZP_04927476.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
gi|254552688|ref|ZP_05143135.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis '98-R604
INH-RIF-EM']
gi|289441009|ref|ZP_06430753.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289747416|ref|ZP_06506794.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289755708|ref|ZP_06515086.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|289763758|ref|ZP_06523136.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
gi|297636254|ref|ZP_06954034.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
KZN 4207]
gi|297733247|ref|ZP_06962365.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
KZN R506]
gi|298527058|ref|ZP_07014467.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|306786486|ref|ZP_07424808.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|306790851|ref|ZP_07429173.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|306791174|ref|ZP_07429476.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|306795959|ref|ZP_07434261.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|306801207|ref|ZP_07437875.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|306805419|ref|ZP_07442087.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|306969711|ref|ZP_07482372.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|306974051|ref|ZP_07486712.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|307081760|ref|ZP_07490930.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|307086376|ref|ZP_07495489.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|313660577|ref|ZP_07817457.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
KZN V2475]
gi|375297846|ref|YP_005102113.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
gi|383309309|ref|YP_005362120.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
RGTB327]
gi|385992806|ref|YP_005911104.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CCDC5180]
gi|385996444|ref|YP_005914742.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CCDC5079]
gi|386000365|ref|YP_005918664.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CTRI-2]
gi|386006401|ref|YP_005924680.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis RGTB423]
gi|392388172|ref|YP_005309801.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|392434058|ref|YP_006475102.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|397675534|ref|YP_006517069.1| TrmH family RNA methyltransferase [Mycobacterium tuberculosis
H37Rv]
gi|422814831|ref|ZP_16863049.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
gi|424806143|ref|ZP_18231574.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
gi|424945468|ref|ZP_18361164.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis NCGM2209]
gi|81345964|sp|P96861.1|Y3579_MYCTU RecName: Full=Uncharacterized tRNA/rRNA methyltransferase
Rv3579c/MT3685
gi|254765083|sp|A5U8Q4.1|Y3618_MYCTA RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MRA_3618
gi|124603820|gb|EAY61783.1| hypothetical protein TBCG_03506 [Mycobacterium tuberculosis C]
gi|148507595|gb|ABQ75404.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
H37Ra]
gi|148723312|gb|ABR07937.1| hypothetical tRNA/rRNA methyltransferase [Mycobacterium
tuberculosis F11]
gi|253322123|gb|ACT26726.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 1435]
gi|289413928|gb|EFD11168.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T46]
gi|289687944|gb|EFD55432.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis 02_1987]
gi|289696295|gb|EFD63724.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis EAS054]
gi|289711264|gb|EFD75280.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis GM 1503]
gi|298496852|gb|EFI32146.1| conserved hypothetical protein [Mycobacterium tuberculosis
94_M4241A]
gi|308328974|gb|EFP17825.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu003]
gi|308332796|gb|EFP21647.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu004]
gi|308340287|gb|EFP29138.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu005]
gi|308343626|gb|EFP32477.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu006]
gi|308348093|gb|EFP36944.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu007]
gi|308352016|gb|EFP40867.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu008]
gi|308352803|gb|EFP41654.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu009]
gi|308356653|gb|EFP45504.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu010]
gi|308360608|gb|EFP49459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu011]
gi|308364196|gb|EFP53047.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu012]
gi|323717773|gb|EGB26971.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CDC1551A]
gi|326905419|gb|EGE52352.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis W-148]
gi|328460351|gb|AEB05774.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 4207]
gi|339296398|gb|AEJ48509.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CCDC5079]
gi|339299999|gb|AEJ52109.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CCDC5180]
gi|344221412|gb|AEN02043.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CTRI-2]
gi|358229983|dbj|GAA43475.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis NCGM2209]
gi|378546723|emb|CCE39002.1| unnamed protein product [Mycobacterium tuberculosis UT205]
gi|379029966|dbj|BAL67699.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis str. Erdman
= ATCC 35801]
gi|380723262|gb|AFE18371.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
RGTB327]
gi|380726889|gb|AFE14684.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
RGTB423]
gi|392055467|gb|AFM51025.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis KZN 605]
gi|395140439|gb|AFN51598.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
tuberculosis H37Rv]
gi|440583087|emb|CCG13490.1| putative TRNA/RRNA METHYLTRANSFERASE [Mycobacterium tuberculosis
7199-99]
gi|444897136|emb|CCP46402.1| Possible tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
H37Rv]
Length = 322
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|291294519|ref|YP_003505917.1| RNA methyltransferase TrmH family, group 3 [Meiothermus ruber DSM
1279]
gi|290469478|gb|ADD26897.1| RNA methyltransferase, TrmH family, group 3 [Meiothermus ruber DSM
1279]
Length = 238
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 116/230 (50%), Gaps = 31/230 (13%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+LK + +G S + + L+ +V HQGLV + + L ++ ++ + + L
Sbjct: 31 LLKELDKLGASYQTVPRIQLDQMVRTTQHQGLVAEITELAYADLEAPFRLAKERGERVLL 90
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
V LD +TDP+N GAIIRSA+ GA GVV + SAPLS +V KAS+G+ + L N+
Sbjct: 91 VVLDGITDPRNYGAIIRSAFALGAHGVVTEERRSAPLSALVMKASAGTASKIPLVQVKNI 150
Query: 458 MQFLVSSAENGWRVLGGS-VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
++L + G V G S +SK + E+ +P LV+GSEG G+R LV C L R
Sbjct: 151 PRYLEQLKQQGIWVYGTSGKASKTI--AELDYQRPLALVIGSEGEGMRRLVAEHCDELAR 208
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
IP ++ G ESLN +VA GV+L+
Sbjct: 209 IP------LSEG----------------------AESLNAAVALGVVLYQ 230
>gi|312126945|ref|YP_003991819.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
hydrothermalis 108]
gi|311776964|gb|ADQ06450.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
hydrothermalis 108]
Length = 253
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 72/225 (32%), Positives = 114/225 (50%), Gaps = 16/225 (7%)
Query: 296 GVGPVLAAL--SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
G PV AL AK E Y SN+ K K+ +++ + G+ +K
Sbjct: 6 GKNPVKEALKSGAKITEVYI----------SNSAKDKETA---QIIDLCRQSGVVVKFVD 52
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K ++ + + QG++ A E I ++ + + +A V LD +TDPQN G+II
Sbjct: 53 KSKIDKMAQTKNPQGVIAIAHEFEYCDIDDILFEARQKKEAPFLVLLDGITDPQNFGSII 112
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA+ GA G+V+ A+NS P++ V KAS+G++E M++ N+ + + E G V
Sbjct: 113 RSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFA 172
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
SS P+ E PT +V+GSEG G+ LV+ L++IP
Sbjct: 173 ADASSPK-PVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIP 216
>gi|406980502|gb|EKE02093.1| hypothetical protein ACD_20C00428G0004 [uncultured bacterium]
Length = 254
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 81/285 (28%), Positives = 136/285 (47%), Gaps = 40/285 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG V A L A R LY+ +G+ + RK ++ +A+N I ++E
Sbjct: 5 EIVYGRNSVEALLEASKRRVNKLYIVKGIKFDNKIRK---------IVDLAKNNNIPVQE 55
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K LN + HQG+ SP+ V+ EL + D+A L + LD V DP NLG+
Sbjct: 56 IPKEKLNQI-AEGSHQGIAASVSPISYVEFDELLMKLKNIDKA-LVIILDGVEDPHNLGS 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIR+A GA G+++ + S P++ V KAS+G++E + + N++ + EN + +
Sbjct: 114 IIRTAVAAGADGIIIPKRRSTPVTATVDKASAGTVEKIPIVQVTNIVNTIEKLKENNFWI 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G + + E LV+G EG G+ LV++ C L++IP G+I+
Sbjct: 174 FGAESTGEQYYF-EADYKVNCGLVVGGEGQGVSTLVKKHCDVLIKIP-------MPGKIN 225
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNS 576
SLNV+ AA ++++ +V ++S +
Sbjct: 226 ---------------------SLNVANAASIIIYEIVRQRLSQGT 249
>gi|256833281|ref|YP_003162008.1| TrmH family RNA methyltransferase [Jonesia denitrificans DSM 20603]
gi|256686812|gb|ACV09705.1| RNA methyltransferase, TrmH family, group 3 [Jonesia denitrificans
DSM 20603]
Length = 326
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 126/244 (51%), Gaps = 34/244 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+++L++A GI++ E ++ +L+ + HQG+ + E +++ +L +A + QA
Sbjct: 113 KEILEIATERGIAVVEATRPELDELTDGSVHQGVAMGVPAYEYLEVDDLLDAAASKGQAP 172
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L +ALD VTDP+NLGAI+R+ FGA GV++ + +A ++ K S+G+ + +
Sbjct: 173 LLIALDSVTDPRNLGAILRAGGAFGAHGVIVPERRAAGMTASAWKVSAGAAARVPVARVT 232
Query: 456 NMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCT 512
N+++ L + ++G V+G G S + ++P P +LV+GSEG GL LV +C
Sbjct: 233 NLVRSLEALKKSGCFVVGLDGDADSS---VRDLPFAADPLVLVVGSEGKGLSRLVRETCD 289
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
+ IP+ T VESLN +VAAG+ L+ + +
Sbjct: 290 AIA----AIPISTT------------------------VESLNAAVAAGITLYEVAAARS 321
Query: 573 SNNS 576
+ S
Sbjct: 322 EDAS 325
>gi|121639499|ref|YP_979723.1| tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Pasteur
1173P2]
gi|224991996|ref|YP_002646685.1| tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Tokyo
172]
gi|289572232|ref|ZP_06452459.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
gi|339633578|ref|YP_004725220.1| tRNA/rRNA methyltransferase [Mycobacterium africanum GM041182]
gi|378773360|ref|YP_005173093.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Mexico]
gi|449065693|ref|YP_007432776.1| tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Korea
1168P]
gi|254765090|sp|A1KPR5.1|Y3644_MYCBP RecName: Full=Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
gi|121495147|emb|CAL73633.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Pasteur 1173P2]
gi|224775111|dbj|BAH27917.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Tokyo 172]
gi|289536663|gb|EFD41241.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis K85]
gi|339332934|emb|CCC28661.1| putative tRNA/rRNA methyltransferase [Mycobacterium africanum
GM041182]
gi|341603520|emb|CCC66201.1| putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Moreau RDJ]
gi|356595681|gb|AET20910.1| Putative tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str.
Mexico]
gi|449034201|gb|AGE69628.1| tRNA/rRNA methyltransferase [Mycobacterium bovis BCG str. Korea
1168P]
Length = 322
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 132/273 (48%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A Q ESLN SVAAGV+L
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVL 300
>gi|440701239|ref|ZP_20883440.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
turgidiscabies Car8]
gi|440276103|gb|ELP64419.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
turgidiscabies Car8]
Length = 313
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 121/253 (47%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + +A+ GI + E + +L+ + HQGLVL
Sbjct: 91 LYVQQYID--------NDERVREALQLVADRGGIHLMEAPRPELDRMTNGLNHQGLVLQV 142
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D L V LD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 143 PPYEYAHPEDLANAAYDNGVDPLIVVLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 202
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPT 492
++ K S+G+ + N+ + L + + G V+ G + L ++P G P
Sbjct: 203 MTAGAWKTSAGAAARTPVARATNLTRTLEAYQKAGIVVV-GLAADGTDELGDLPALGGPV 261
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C HLVRIP +P E
Sbjct: 262 VIVVGSEGKGLSRLVGETCDHLVRIP--MP--------------------------GGTE 293
Query: 553 SLNVSVAAGVLLH 565
SLN VAAG++L+
Sbjct: 294 SLNAGVAAGIVLY 306
>gi|115378458|ref|ZP_01465617.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
DW4/3-1]
gi|310822269|ref|YP_003954627.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
gi|115364520|gb|EAU63596.1| RNA methyltransferase, TrmH family, group 3 [Stigmatella aurantiaca
DW4/3-1]
gi|309395341|gb|ADO72800.1| RNA methyltransferase, TrmH family [Stigmatella aurantiaca DW4/3-1]
Length = 273
Score = 107 bits (268), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 10/225 (4%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PVL AL A+ E L++ EG + K ++L A + GI + +
Sbjct: 19 VYGVNPVLEALRARPDEVERLFIVEG---------QLGSKAAAEILSRARDSGIRTERVA 69
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L + HQG+ + E V + +L + +A L V LD + DP NLGAII
Sbjct: 70 RERLTTLAEGGVHQGVAAELRGFEYVDVPDLLEAAKASGRAPLVVVLDGIQDPHNLGAII 129
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA+ GA G+V+ + ++GVV+KAS+G++E + N+ + L E G V
Sbjct: 130 RSAHALGAHGIVIGKDRAVQVTGVVAKASAGAVEHCPIARVVNISRALEELKEAGLWVAA 189
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
SK PL P LV+G+EG G+R V + C + IP
Sbjct: 190 ADTHSKE-PLWGARLDGPLALVVGAEGAGVREGVLKHCDFRLGIP 233
>gi|302552340|ref|ZP_07304682.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
40736]
gi|302469958|gb|EFL33051.1| tRNA/rRNA methyltransferase [Streptomyces viridochromogenes DSM
40736]
Length = 311
Score = 107 bits (268), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 36/253 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 89 LYVQQFID--------SDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 140
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L +ADE L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 141 PPYEYAHPEDLAAAAADEGDDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 200
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K S+G+ + N+ + L + + G V+G + +A + G P
Sbjct: 201 MTAGAWKTSAGAAARTPVARATNLTRALEAYKKAGIVVVGLAADGEAELGDLEALGGPVA 260
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG GL LV +C + VRIP +P ES
Sbjct: 261 IVVGSEGKGLSRLVGETCDYRVRIP--MP--------------------------GGTES 292
Query: 554 LNVSVAAGVLLHH 566
LN VAAG++L+
Sbjct: 293 LNAGVAAGIVLYE 305
>gi|443671376|ref|ZP_21136488.1| putative RNA methyltransferase [Rhodococcus sp. AW25M09]
gi|443416109|emb|CCQ14825.1| putative RNA methyltransferase [Rhodococcus sp. AW25M09]
Length = 327
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A AL+V G S+ R K+ ++ A + ISI E
Sbjct: 85 EVVLGRNPVVECLRAGV-PATALWVAVGTD--SDERLKE-------AVQRAGDARISILE 134
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P +L + + +L+VALD +TDP+NLGA
Sbjct: 135 VPRSDLDKLSANGLHQGLALQVPPYRYAHPDDLISNARTHQEPALFVALDNITDPRNLGA 194
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RS FG GVV+ + SA +S V + S+G+ + + N+ + L G V
Sbjct: 195 VVRSVAAFGGHGVVIPQRRSASVSAVAWRTSAGAAARLPIARAVNLTRTLKDWQSKGVTV 254
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ P ++V+GSEG GL LV +C H++ IP P
Sbjct: 255 VGLDAGGD-TELDTFDGKGPVVIVVGSEGKGLSRLVSETCDHILSIPMAGP--------- 304
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 305 -------------------VESLNASVAAGVVLADI 321
>gi|15612676|ref|NP_240979.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
gi|10172725|dbj|BAB03832.1| tRNA/rRNA methyltransferase [Bacillus halodurans C-125]
Length = 249
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/231 (29%), Positives = 119/231 (51%), Gaps = 20/231 (8%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G P++ AL + R +++ EG K +KVL++A+ G+ ++
Sbjct: 4 EFITGKNPIIEALRS-GRPMNKIWIGEG----------SQKGQMQKVLELAKEQGVLVQH 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K L+ ++G+ HQG+V + E ++ +L +A++ + ++ LDEV DP NLG+
Sbjct: 53 VPKRKLDQLIGHENHQGVVASVAAYEYAEMDDLFQRAAEKGEEPFFIVLDEVEDPHNLGS 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+R+A G GV++ + + L+ V+KAS+G++E + + N+ + + + G
Sbjct: 113 ILRTADAAGVHGVIIPKRRAVGLTQTVAKASTGAIEYVPVVRVTNLARTMEDLKKRGLWF 172
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G GS + + P LV+GSEG GL LV C LVRIP
Sbjct: 173 IGTDAKGSEDYRGAAYD-----MPIALVIGSEGKGLSRLVREKCDFLVRIP 218
>gi|294993699|ref|ZP_06799390.1| putative tRNA/rRNA methyltransferase [Mycobacterium tuberculosis
210]
Length = 324
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|257057470|ref|YP_003135302.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
43017]
gi|256587342|gb|ACU98475.1| rRNA methylase, putative, group 3 [Saccharomonospora viridis DSM
43017]
Length = 312
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/280 (32%), Positives = 132/280 (47%), Gaps = 46/280 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL A ALYV L++ +++R + ++MA + G+SI E
Sbjct: 65 EIIAGRNPVVEALRADV-PATALYVA--LNIDADDR-------VTEAVRMAADKGVSILE 114
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQGL L P EL + + + L VALD VTDP+NLGA
Sbjct: 115 VPRTELDRKTDGAVHQGLGLQVPPFSYATPDELLQTARESGEPPLLVALDGVTDPRNLGA 174
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA GV+L ++ SA ++ V + S+G+ + + N+ + L A G +
Sbjct: 175 IIRSAAAFGAHGVLLPSRRSAGMTAVAWRTSAGAAARLPVGMATNLTRQLKEWAAEGLLI 234
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G GS + ++ P ++V+GSEG GL LV +C V IP + +
Sbjct: 235 AGLDADGSTDIDTMNIDV----DPLVVVVGSEGRGLSRLVRETCDFTVSIP------MAS 284
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G VESLN SVA VLL +
Sbjct: 285 G----------------------VESLNASVAGAVLLAEI 302
>gi|121728986|ref|ZP_01681989.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|147673348|ref|YP_001218092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O395]
gi|153214903|ref|ZP_01949701.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
gi|153803651|ref|ZP_01958237.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|227119037|ref|YP_002820933.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|229513521|ref|ZP_04402985.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TMA 21]
gi|229521664|ref|ZP_04411082.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TM 11079-80]
gi|229524579|ref|ZP_04413984.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
bv. albensis VL426]
gi|229527472|ref|ZP_04416864.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
12129(1)]
gi|262170151|ref|ZP_06037840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC27]
gi|384425527|ref|YP_005634885.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
LMA3984-4]
gi|417825809|ref|ZP_12472396.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE48]
gi|419831022|ref|ZP_14354506.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-1A2]
gi|419838282|ref|ZP_14361719.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-46B1]
gi|421345013|ref|ZP_15795415.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-43B1]
gi|421356198|ref|ZP_15806528.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-45]
gi|422308526|ref|ZP_16395674.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae CP1035(8)]
gi|422918425|ref|ZP_16952737.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-02A1]
gi|423736242|ref|ZP_17709431.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-41B1]
gi|423823321|ref|ZP_17717328.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-55C2]
gi|423857281|ref|ZP_17721129.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-59A1]
gi|423884858|ref|ZP_17724722.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-60A1]
gi|423958719|ref|ZP_17735620.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HE-40]
gi|423985864|ref|ZP_17739176.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HE-46]
gi|423998843|ref|ZP_17742092.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-02C1]
gi|424010576|ref|ZP_17753508.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-44C1]
gi|424017746|ref|ZP_17757571.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-55B2]
gi|424020833|ref|ZP_17760612.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-59B1]
gi|424592290|ref|ZP_18031712.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1037(10)]
gi|424626046|ref|ZP_18064504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-50A1]
gi|424630528|ref|ZP_18068809.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-51A1]
gi|424634575|ref|ZP_18072672.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-52A1]
gi|424637654|ref|ZP_18075659.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-55A1]
gi|424641557|ref|ZP_18079436.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-56A1]
gi|424649629|ref|ZP_18087288.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-57A1]
gi|443528719|ref|ZP_21094751.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-78A1]
gi|121628709|gb|EAX61177.1| RNA methyltransferase, TrmH family [Vibrio cholerae V52]
gi|124115062|gb|EAY33882.1| RNA methyltransferase, TrmH family [Vibrio cholerae 1587]
gi|124120810|gb|EAY39553.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-3]
gi|146315231|gb|ABQ19770.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|227014487|gb|ACP10697.1| RNA methyltransferase, TrmH family [Vibrio cholerae O395]
gi|229335104|gb|EEO00589.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
12129(1)]
gi|229338160|gb|EEO03177.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
bv. albensis VL426]
gi|229341258|gb|EEO06262.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TM 11079-80]
gi|229349398|gb|EEO14354.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
TMA 21]
gi|262021559|gb|EEY40271.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC27]
gi|327485080|gb|AEA79487.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
LMA3984-4]
gi|340045667|gb|EGR06608.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE48]
gi|341635058|gb|EGS59786.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-02A1]
gi|395939096|gb|EJH49782.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-43B1]
gi|395949312|gb|EJH59938.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-45]
gi|408010799|gb|EKG48646.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-50A1]
gi|408016941|gb|EKG54466.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-52A1]
gi|408021910|gb|EKG59144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-56A1]
gi|408022336|gb|EKG59553.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-55A1]
gi|408029654|gb|EKG66367.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1037(10)]
gi|408031140|gb|EKG67779.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-57A1]
gi|408053029|gb|EKG88051.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-51A1]
gi|408617469|gb|EKK90589.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae CP1035(8)]
gi|408619523|gb|EKK92552.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-1A2]
gi|408628954|gb|EKL01671.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-41B1]
gi|408634239|gb|EKL06507.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-55C2]
gi|408639507|gb|EKL11317.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-59A1]
gi|408639900|gb|EKL11705.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-60A1]
gi|408656075|gb|EKL27181.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HE-40]
gi|408663384|gb|EKL34263.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HE-46]
gi|408852075|gb|EKL91925.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-02C1]
gi|408855664|gb|EKL95363.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-46B1]
gi|408858338|gb|EKL98014.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-55B2]
gi|408862969|gb|EKM02468.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-44C1]
gi|408866178|gb|EKM05565.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-59B1]
gi|443452942|gb|ELT16777.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-78A1]
Length = 247
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|452972577|gb|EME72406.1| TrmH-family tRNA/rRNA methyltransferase YacO [Bacillus sonorensis
L12]
Length = 249
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/259 (29%), Positives = 128/259 (49%), Gaps = 40/259 (15%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
RE Y L++ E N K + ++V+ +A GI+I + L+ +V + HQG
Sbjct: 22 RELYKLWMAE------NTVKGQA----QQVVDLAAKKGITIHYVPRKKLDQMVSGQ-HQG 70
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+V + E ++++L + D D+ + LDE+ DP NLG+I+R+A GA G+++
Sbjct: 71 VVAQVAAYEYAELEDLFQKAEDRDEQPFLIVLDEIEDPHNLGSIMRTADAVGAHGIIIPK 130
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ + L+ V+KAS+G++E + + N+ + L E G ++G S + +
Sbjct: 131 RRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEELKERGVWIVGTDASGRQ-DYRSLDG 189
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P LV+GSEG G+ LV+ C L+R+P AG+
Sbjct: 190 NMPLALVIGSEGKGMGRLVKEKCDFLIRLP-------MAGK------------------- 223
Query: 549 MAVESLNVSVAAGVLLHHL 567
V SLN SVAAG+LL+ +
Sbjct: 224 --VTSLNASVAAGLLLYEV 240
>gi|154253162|ref|YP_001413986.1| RNA methyltransferase [Parvibaculum lavamentivorans DS-1]
gi|154157112|gb|ABS64329.1| RNA methyltransferase, TrmH family, group 3 [Parvibaculum
lavamentivorans DS-1]
Length = 288
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 20/227 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG VLAAL+ R + E L L+ N + ++G ++ ++ + ++
Sbjct: 54 LYGFHAVLAALANPAR------LAERLVLTRNAETELARQGA----RLPADLPVRLEIME 103
Query: 354 KHDLNMVV-GNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
D+ ++ HQG+ L ASPL +LD + A E + V LD+VTDP N GAI
Sbjct: 104 NEDIAALLPAGAVHQGIALRASPL-----PDLDVVEACEGTNRVVV-LDQVTDPHNFGAI 157
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA FGA ++ +NS L GV++KA+SG+LEL+ + N+++ + E G+ V+
Sbjct: 158 LRSAAVFGAGALITTERNSPSLGGVLAKAASGALELVRVARITNLVRAIEELKELGFEVV 217
Query: 473 GGSVSSKA-VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G +A +P ++ P LVLG+EG GLR L C L R+P
Sbjct: 218 GLDGEGEASLPDLKLSP--RVALVLGAEGAGLRRLTREHCDLLARLP 262
>gi|296138340|ref|YP_003645583.1| TrmH family RNA methyltransferase [Tsukamurella paurometabola DSM
20162]
gi|296026474|gb|ADG77244.1| RNA methyltransferase, TrmH family, group 3 [Tsukamurella
paurometabola DSM 20162]
Length = 324
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 136/284 (47%), Gaps = 39/284 (13%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G + D++ E V +MA + GISI E
Sbjct: 80 EYVLGRNPVVECLRADV-PATALYVAVG--------AQNDERLTESV-RMAADKGISILE 129
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ + N HQG+ L P ++L +AD +A + VALD +TDP+NLGA
Sbjct: 130 VQRAELDRMSENGLHQGIALQIPPYSYAHPEDLLRRAADRGEAPMIVALDNITDPRNLGA 189
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FG GVV+ ++ SA ++ V + S+G+ + + N+ + L A G ++
Sbjct: 190 VIRSAAAFGGHGVVIPSRRSAAITAVTWRTSAGAAARLPVAQAPNLNRTLADYAAAGLQI 249
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G V L++ ++V+GSEG GL LV +C ++ IP
Sbjct: 250 VGLDAGGD-VTLDDYRADTGVVVVVGSEGKGLSRLVRENCDSILSIP------------- 295
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
+VESLN SVAAGV+L + + N
Sbjct: 296 ---------------IASSVESLNASVAAGVVLADFARQRRNRN 324
>gi|167967116|ref|ZP_02549393.1| putative trna/rrna methyltransferase [Mycobacterium tuberculosis
H37Ra]
Length = 316
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>gi|417859598|ref|ZP_12504654.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens F2]
gi|338822662|gb|EGP56630.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens F2]
Length = 295
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYATLRRAVRDAKRERGEIPTPQQPKRR-NRGADDWK--PPQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL+ R+ L S++ N + D + A+ ++ S D++ V
Sbjct: 68 RAALANPERQLIKL------SVTQNALARLD-------IGEADAQPFPVEMVSPQDIDKV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + K+ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETKPLPVKKLNALR-------DSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTMRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ + G+ L+LG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIEQTFSGEKIALILGAEGKGLRQKTRETVSALARLDMPGEI 270
>gi|455648385|gb|EMF27262.1| tRNA/rRNA methyltransferase [Streptomyces gancidicus BKS 13-15]
Length = 312
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/294 (31%), Positives = 137/294 (46%), Gaps = 42/294 (14%)
Query: 274 GRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK 333
GRTT + S +VG PV+ AL LYVQ+ + D++
Sbjct: 56 GRTTQRRGGRSASELVVGRN-----PVVEALREGV-PASTLYVQQFID--------NDER 101
Query: 334 GYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQ 393
E + AE GI++ E + +L+ + HQGLVL P E ++L + DE Q
Sbjct: 102 VREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLVAAAHDEGQ 161
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
L VALD VTDP+NLGA++RS FG GVV+ + +A ++ K S+G+ +
Sbjct: 162 DPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVAR 221
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
N+ + L + + G V+G + +A + P ++V+GSEG GL LV +C
Sbjct: 222 ATNLTRALEAYKKAGVVVVGLAADGEAELGDLEALDGPVVIVVGSEGKGLSRLVGETCDV 281
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VRIP +P G A ESLN VAAG++L+ +
Sbjct: 282 RVRIP--MP-----------------GGA---------ESLNAGVAAGIVLYEV 307
>gi|348173028|ref|ZP_08879922.1| tRNA/rRNA methyltransferase [Saccharopolyspora spinosa NRRL 18395]
Length = 317
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 92/320 (28%), Positives = 149/320 (46%), Gaps = 63/320 (19%)
Query: 252 RRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREF 311
R D +++TE+ +R +Q+ P++V G PV+ + A
Sbjct: 51 RADARSKTEQLRTKRRAQQDAQ-------------PELVA----GRNPVVECIRAGV-PA 92
Query: 312 YALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
LYV +G+ + D + E V + A++ GIS+ + + +L+ + N HQGL L
Sbjct: 93 TGLYVAQGIDI--------DDRVTEAV-REAKSRGISVVDVPRIELDRMTNNALHQGLAL 143
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+++ ++D L VALD VTDP+NLGA+IRSA FGA GV++ + S
Sbjct: 144 QVPQFSYAHPEDVLAAASDSGMPPLIVALDGVTDPRNLGAVIRSAAAFGAHGVIVPQRRS 203
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIP 487
A ++ V + S+G+ + + N+ + L + G V+G ++S + L
Sbjct: 204 AGITAVAWRTSAGTAAKLPVAKAVNLTRTLKDLKDAGLMVIGLDADADITSDELELAT-- 261
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQS 547
+P ++V+GSEG GL LV +C V IP + +G
Sbjct: 262 --EPLVVVVGSEGRGLSRLVRETCDQTVSIP------MASG------------------- 294
Query: 548 FMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 295 ---VESLNASVAAGVVLAEV 311
>gi|386385281|ref|ZP_10070583.1| TrmH family RNA methyltransferase [Streptomyces tsukubaensis
NRRL18488]
gi|385667288|gb|EIF90729.1| TrmH family RNA methyltransferase [Streptomyces tsukubaensis
NRRL18488]
Length = 316
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 126/253 (49%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLD 372
LYVQ+ N+ + ++ L++A G I+I E + +L+ + HQGLVL
Sbjct: 94 LYVQQ---FIDNDERVRE------ALQLATGRGNINIMEAPRPELDRMTNGLNHQGLVLQ 144
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E ++L ++++ + +L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 145 VPPYEYAHPEDLAAAASEDGEDALIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAA 204
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K S+G+ + N+ + L S + G V+G + + + G P
Sbjct: 205 GMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGEHEVGDLEALGGPV 264
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C LVRIP +P G A E
Sbjct: 265 VIVVGSEGKGLSRLVGETCDFLVRIP--MP-----------------GGA---------E 296
Query: 553 SLNVSVAAGVLLH 565
SLN VAAGV+L+
Sbjct: 297 SLNAGVAAGVVLY 309
>gi|325293360|ref|YP_004279224.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
gi|418406981|ref|ZP_12980299.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens 5A]
gi|325061213|gb|ADY64904.1| tRNA/rRNA metyltransferase [Agrobacterium sp. H13-3]
gi|358006125|gb|EHJ98449.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens 5A]
Length = 295
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 139/284 (48%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYATLRRAVRDAKRERGEIPTPQQPKRR-NRGAEDWK--PPQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AALS R+ L S++ N + D + A+ ++ S D++ V
Sbjct: 68 RAALSNPERQLIKL------SVTLNAFARLD-------IGEADAQPFPVEIVSPQDIDKV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL +K+LD + ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETRPL---PVKKLDALK----KSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTIRHSPTESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ + G LVLG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIEQTFTGAKIALVLGAEGKGLRQKTRETVSALARLDMPGEI 270
>gi|289445173|ref|ZP_06434917.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
gi|289418131|gb|EFD15332.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis CPHL_A]
Length = 380
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/274 (32%), Positives = 133/274 (48%), Gaps = 42/274 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA-SLWVALDEVTDPQNLG 410
+ DL+ + N HQG+ L P +L ++A DQ +L VALD ++DP+NLG
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDL--LAAALDQPPALLVALDNLSDPRNLG 175
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AI+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G R
Sbjct: 176 AIVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVR 235
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V+G L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 236 VIGLDAGGGTA-LDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------ 282
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A Q ESLN SVAAGV+L
Sbjct: 283 ----------MAAQ------AESLNASVAAGVVL 300
>gi|167039502|ref|YP_001662487.1| RNA methyltransferase [Thermoanaerobacter sp. X514]
gi|300915248|ref|ZP_07132563.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X561]
gi|307725172|ref|YP_003904923.1| TrmH family RNA methyltransferase [Thermoanaerobacter sp. X513]
gi|166853742|gb|ABY92151.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X514]
gi|300888972|gb|EFK84119.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X561]
gi|307582233|gb|ADN55632.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter sp.
X513]
Length = 247
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 74/275 (26%), Positives = 133/275 (48%), Gaps = 41/275 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G PV+ A+ + +E +YV K K++ A+ GI + T
Sbjct: 7 IFGRNPVIEAIKS-GKEIEKIYVS-----------KTAGGNISKIINFAKEAGIVVSTTD 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + G+R HQG+V ++ + ++ +L + + + + LDE+TDP NLGAII
Sbjct: 55 NDTLSELAGSRNHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAII 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG G+++ + + ++ V K S+G++E M + +N+ + E G ++G
Sbjct: 115 RSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVG 174
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V+++ E+ P V+G+EG G+ LV ++C +V+IP G+I+
Sbjct: 175 TDVNAEK-SFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIP-------MKGKIN-- 224
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA +L++ +V
Sbjct: 225 -------------------SLNASVAASILIYQVV 240
>gi|422911417|ref|ZP_16946039.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-09]
gi|424661085|ref|ZP_18098331.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-16]
gi|341631387|gb|EGS56281.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-09]
gi|408049661|gb|EKG84852.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-16]
Length = 247
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|150015025|ref|YP_001307279.1| RNA methyltransferase [Clostridium beijerinckii NCIMB 8052]
gi|149901490|gb|ABR32323.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
beijerinckii NCIMB 8052]
Length = 300
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 115/231 (49%), Gaps = 29/231 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ +A+ I IKE K L+ + G HQG++ +P + ++ ++ ++ +A
Sbjct: 94 IVGLAKENKILIKEVDKRKLDSMCGGEVHQGVIAKVTPYKYSEVSDILDLAEKRGEAPFI 153
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
V LDEV DP NLG+I+R+A FG G++L + SA +S V K+S G++E +++ N+
Sbjct: 154 VILDEVEDPHNLGSIVRTAELFGVHGIILPKRRSASVSTTVYKSSVGAIEHVKIAKVTNL 213
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ E G + G + ++ ++ G P +++G+EG G+ L C L++I
Sbjct: 214 NSTIEELKEKGIWIYGADIRAEEYSY-QVDFGGPCAVIIGNEGRGISKLTVEKCDKLIKI 272
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
P G+I+ SLN SVA G++++ ++
Sbjct: 273 P-------MVGKIN---------------------SLNASVAGGIIMYEVL 295
>gi|424881110|ref|ZP_18304742.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WU95]
gi|392517473|gb|EIW42205.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WU95]
Length = 296
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 137/284 (48%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPQKRKR--GGEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D E +GI + S +++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEVD----------VEALGIPFEIVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------ESPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G+ LVLGSEG GLR + L R+ PG I
Sbjct: 231 PAPLEGTFSGEKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|31794756|ref|NP_857249.1| tRNA/rRNA methyltransferase [Mycobacterium bovis AF2122/97]
gi|81421359|sp|Q7TW55.1|Y3610_MYCBO RecName: Full=Uncharacterized tRNA/rRNA methyltransferase Mb3610c
gi|31620353|emb|CAD95796.1| PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Mycobacterium bovis
AF2122/97]
Length = 402
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGGTA-LDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A Q ESLN SVAAGV+L
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVL 300
>gi|189191132|ref|XP_001931905.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187973511|gb|EDU41010.1| RNA methyltransferase [Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 651
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/342 (28%), Positives = 144/342 (42%), Gaps = 89/342 (26%)
Query: 282 APSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQ-EGLSLSSNNRKKKDKKGYEKV 338
P ++P E +YG VLAA+ A R+FY LY+ G+ N++ K K+
Sbjct: 328 GPESLPYTTAASEFIYGTRSVLAAIKANRRKFYKLYIHARGME---NSQAIKSTIRSLKL 384
Query: 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD-------- 390
+ +G ++ RPH GL+L+ASP ++ I +L S +
Sbjct: 385 FHITTEVGDEYMRA----MDKASNGRPHNGLILEASPPPVLPITQLTAASIEDGAFNLSL 440
Query: 391 -----EDQA-----------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
ED+A L + +D V D NLGAI RSAY G +V
Sbjct: 441 DRQSAEDEAINGTQELYEYKSDGWRYPLILYIDGVVDEGNLGAIARSAYVLGVDAIVTPT 500
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPL----- 483
++A S + KASSG+ E M L QF SS++ GWR+ +S AVPL
Sbjct: 501 HHTAEWSPIAIKASSGAAEAMPLFRVKEPEQFFQSSSQVGWRIY----ASDAVPLSTQDG 556
Query: 484 -----------NEIPPG------QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
+ +P PTIL++GSE +G++ + + + V IP VD
Sbjct: 557 QHVVYSLSQRYSPLPADHSPLAEHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDE- 615
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ V+S NVSVAAG+L + ++
Sbjct: 616 ----------------------VGVDSFNVSVAAGILCYQMM 635
>gi|443626475|ref|ZP_21110895.1| putative tRNA/rRNA methyltransferase [Streptomyces
viridochromogenes Tue57]
gi|443340112|gb|ELS54334.1| putative tRNA/rRNA methyltransferase [Streptomyces
viridochromogenes Tue57]
Length = 313
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 94/317 (29%), Positives = 148/317 (46%), Gaps = 44/317 (13%)
Query: 256 KARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG-----EGLYGVGPVLAALSAKTRE 310
K T E ++ +++ K+A P+ G E + G PV+ AL
Sbjct: 29 KGPTPPAEMRKGHKKNRIATAKAKQAVRRPAPRGRGGKASSELVVGRNPVVEALRGGV-P 87
Query: 311 FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLV 370
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLV
Sbjct: 88 ASTLYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLV 139
Query: 371 LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
L P E ++L +A+E + L VALD VTDP+NLGA++RS FG GVV+ +
Sbjct: 140 LQVPPYEYAHPEDLADAAAEEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERR 199
Query: 431 SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ 490
+A ++ K S+G+ + N+ + L S + G ++G + + V L ++ +
Sbjct: 200 AAGMTAGAWKTSAGTAARTPVARATNLTRALESYKKAGIVIVGLAADGE-VELGDLEALE 258
Query: 491 -PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P ++V+GSEG GL LV +C VRIP +P G A
Sbjct: 259 GPVVIVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA------- 292
Query: 550 AVESLNVSVAAGVLLHH 566
ESLN VAAG++L+
Sbjct: 293 --ESLNAGVAAGIVLYE 307
>gi|383639714|ref|ZP_09952120.1| RNA methyltransferase [Streptomyces chartreusis NRRL 12338]
Length = 313
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 124/254 (48%), Gaps = 38/254 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 91 LYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 142
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D+ + L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 143 PPYEYAHPQDLAEAALDDGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 202
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPT 492
++ K S+G+ + N+ + L + + G V+G + + V L E+ G P
Sbjct: 203 MTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGIVVVGLAADGE-VELGELEALGGPV 261
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
+V+GSEG GL LV +C VRIP +P G A E
Sbjct: 262 AIVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------E 293
Query: 553 SLNVSVAAGVLLHH 566
SLN VAAG++L+
Sbjct: 294 SLNAGVAAGIVLYE 307
>gi|188588931|ref|YP_001919654.1| TrmH family RNA methyltransferase [Clostridium botulinum E3 str.
Alaska E43]
gi|188499212|gb|ACD52348.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E3 str. Alaska E43]
Length = 290
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 48/279 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQ----EGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ G VL AL + R LY+ EG S+++ K KDKK I I
Sbjct: 51 IIGRNAVLEALKTE-RTIETLYISNSKLEG-SINAIISKAKDKK-------------ILI 95
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
KE K L+ + N HQG++ +P E ++ ++ ++ + + V LDEV DP NL
Sbjct: 96 KEVDKRKLDSMCNNAVHQGVIARVTPYEYSEVSDILELAKKKGENPFIVILDEVEDPHNL 155
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
G+IIR+A FG G+++ + SA ++ +V K+S G++E +++ N+ + E G
Sbjct: 156 GSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGI 215
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V G + ++ + G P +++G+EG G+ L + C L++IP G+
Sbjct: 216 WVYGTDIRAEEYSY-QTDFGGPCAIIIGNEGKGISKLTLKKCDKLIKIP-------MVGK 267
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I+ SLN SVA G++++ ++
Sbjct: 268 IN---------------------SLNASVAGGIIMYEVL 285
>gi|251779338|ref|ZP_04822258.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
gi|243083653|gb|EES49543.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
E1 str. 'BoNT E Beluga']
Length = 290
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 48/279 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQ----EGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ G VL AL + R LY+ EG S+++ K KDKK I I
Sbjct: 51 IIGRNAVLEALKTE-RTIETLYISNSKLEG-SINAIISKAKDKK-------------ILI 95
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
KE K L+ + N HQG++ +P E ++ ++ ++ + + V LDEV DP NL
Sbjct: 96 KEVDKRKLDSMCNNAVHQGVIARVTPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNL 155
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
G+IIR+A FG G+++ + SA ++ +V K+S G++E +++ N+ + E G
Sbjct: 156 GSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGI 215
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V G + ++ + G P +++G+EG G+ L + C L++IP G+
Sbjct: 216 WVYGTDIRAEEYSY-QTDFGGPCAIIIGNEGKGISKLTLKKCDKLIKIP-------MVGK 267
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I+ SLN SVA G++++ ++
Sbjct: 268 IN---------------------SLNASVAGGIIMYEVL 285
>gi|365758299|gb|EHN00149.1| Mrm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 296
Score = 107 bits (266), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/317 (28%), Positives = 145/317 (45%), Gaps = 71/317 (22%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG V AAL R F++ + G K+L+ + M I+ +
Sbjct: 8 EYVYGTNSVYAALLNPGRGFHSRVLYHGTIPG-------------KILQKIDEMKITTEL 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA-------------DEDQAS--- 395
KH LN++ H + L+ PL I L + +ED A+
Sbjct: 55 VDKHKLNLLTNYGVHNNIALETKPLLPADIAYLGDVDVASVELTVYELGFNNEDIANALP 114
Query: 396 -----------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
L + LDE+TDP N+GAI+RSAYF G +V+ KN +PL+ VVSK SSG
Sbjct: 115 YRARAGSKNFPLGLYLDEITDPHNIGAIVRSAYFLGVDFIVMSRKNCSPLTPVVSKTSSG 174
Query: 445 SLELMELRYCNNMMQFLVSSAE-NGWRVLG---GSVSSKAVP---------LNEIPPGQP 491
+LEL+ + Y + ++F S E GW + G+V+++ L+ + +P
Sbjct: 175 ALELLPIFYADKPLEFFTKSQEMGGWTFITSHLGNVTTEKYTTGKTLGVHDLHGMCAERP 234
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
+LV+G+E G+R ++ V IP AG ++ ++ S E V
Sbjct: 235 VVLVVGNESQGVRTNLKMRSDFFVEIP-------FAG------SETHNCSPEPI-----V 276
Query: 552 ESLNVSVAAGVLLHHLV 568
+SLNVSVA +L+ +++
Sbjct: 277 DSLNVSVATALLIDNIL 293
>gi|418299346|ref|ZP_12911180.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens CCNWGS0286]
gi|355535147|gb|EHH04437.1| tRNA/rRNA metyltransferase [Agrobacterium tumefaciens CCNWGS0286]
Length = 295
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/284 (30%), Positives = 137/284 (48%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYATLRRAVRDAKRERGEIPTPQQPKRR-NRGADDWKP--PQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL+ R+ L S++ N + D + A+ ++ S D++ V
Sbjct: 68 RAALANPERQLIKL------SVTQNAFARLD-------IGEADAQPFPVEMVSPQDIDKV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + ++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETRPLPVKRLGALK-------DSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTMRHSPTESGVLAKSASGALELIPYIQITNLADALSELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ + G+ LVLG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIEQTFSGEKIALVLGAEGKGLRQKTRETVSALARLDMPGEI 270
>gi|421586981|ref|ZP_16032447.1| TrmH family RNA methyltransferase [Rhizobium sp. Pop5]
gi|403708678|gb|EJZ23285.1| TrmH family RNA methyltransferase [Rhizobium sp. Pop5]
Length = 296
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 134/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYANLRRAHRDAKRERGEIPTPQPQKRRR--GAEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + N + D +GI ++ S +++ V
Sbjct: 73 RAALDNPERKKIKLFV------TPNALARLDID--------PGTLGIPVETVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL M +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPMRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G+ LVLGSEG GLR + L R+ PG I
Sbjct: 231 PAPLEGTFSGEKVALVLGSEGKGLRQKTRETVGALARLDMPGAI 274
>gi|397906389|ref|ZP_10507197.1| TrmH family tRNA/rRNA methyltransferase YacO [Caloramator
australicus RC3]
gi|397160558|emb|CCJ34534.1| TrmH family tRNA/rRNA methyltransferase YacO [Caloramator
australicus RC3]
Length = 267
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 77/273 (28%), Positives = 134/273 (49%), Gaps = 43/273 (15%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK-VLKMAENMGISIKETSK 354
G PV+ A+ + R LYV +G D +G K ++ +A GI + E +
Sbjct: 28 GRNPVIEAIKS-GRTIEKLYVSKG-----------DLEGSIKMIISLARERGIVVNEVER 75
Query: 355 HDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIR 414
L+ + + HQG++ + ++++ ++ ++ + + LDE+ DP NLG+IIR
Sbjct: 76 KRLDDMSTTKAHQGVIAVVGEYKYYDLEDILNLAREKGEDPFIIILDEIEDPHNLGSIIR 135
Query: 415 SAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGG 474
SA FGA GV++ + SA ++ V+KAS+G++E ++ N+ Q + ENG V
Sbjct: 136 SANIFGAHGVIIPKRRSALVTATVAKASAGAIEYTKIAKVTNLNQVIKELKENGIWVAAL 195
Query: 475 SVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVD 534
+ + + N+ G P +V+GSEG G+ LV+ +C +V+IP
Sbjct: 196 DMDGE-ICYNKDLRG-PLAVVIGSEGRGVSRLVKENCDFVVKIP---------------- 237
Query: 535 ADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
F + SLN SVAAGV+++ +
Sbjct: 238 ------------MFGEISSLNASVAAGVIMYEV 258
>gi|296112249|ref|YP_003626187.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
gi|416156342|ref|ZP_11604474.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
gi|416216298|ref|ZP_11623622.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
gi|416224766|ref|ZP_11626670.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
gi|416230594|ref|ZP_11628518.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
gi|416236260|ref|ZP_11630587.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
gi|416237930|ref|ZP_11631285.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
gi|416241686|ref|ZP_11632914.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
gi|416245911|ref|ZP_11634804.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
gi|416250539|ref|ZP_11637325.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
gi|416252952|ref|ZP_11638143.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
gi|421779066|ref|ZP_16215561.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
gi|295919943|gb|ADG60294.1| SpoU family rRNA methylase [Moraxella catarrhalis BBH18]
gi|326560717|gb|EGE11085.1| SpoU family rRNA methylase [Moraxella catarrhalis 46P47B1]
gi|326561758|gb|EGE12093.1| SpoU family rRNA methylase [Moraxella catarrhalis 7169]
gi|326562300|gb|EGE12626.1| SpoU family rRNA methylase [Moraxella catarrhalis 103P14B1]
gi|326563077|gb|EGE13350.1| SpoU family rRNA methylase [Moraxella catarrhalis 12P80B1]
gi|326569018|gb|EGE19087.1| SpoU family rRNA methylase [Moraxella catarrhalis BC1]
gi|326571709|gb|EGE21722.1| SpoU family rRNA methylase [Moraxella catarrhalis BC8]
gi|326571838|gb|EGE21844.1| SpoU family rRNA methylase [Moraxella catarrhalis BC7]
gi|326574377|gb|EGE24320.1| SpoU family rRNA methylase [Moraxella catarrhalis CO72]
gi|326575504|gb|EGE25429.1| SpoU family rRNA methylase [Moraxella catarrhalis 101P30B1]
gi|326578077|gb|EGE27937.1| SpoU family rRNA methylase [Moraxella catarrhalis O35E]
gi|407813844|gb|EKF84623.1| SpoU family rRNA methylase [Moraxella catarrhalis RH4]
Length = 290
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 83/314 (26%), Positives = 144/314 (45%), Gaps = 36/314 (11%)
Query: 255 VKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYAL 314
+K R++K + Q + A PK YG+ V + + E L
Sbjct: 1 MKKRSQKTDNQSFKSSSKEKLNKPHHQAKPAKPK--NPYFYGIHAVSMLIKRRPEEVLGL 58
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDAS 374
++Q L + + + ++ +++ A++ GISI+ + L + G++ HQG+V A
Sbjct: 59 FIQ----LRDDGQMSSE---HQLIVQSAKHFGISIQNAHRERLTELCGSQQHQGVVALAR 111
Query: 375 PLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPL 434
M LD + +D L++ LD++TD NLGA +R+A G V+L SAP+
Sbjct: 112 TAPMADETILDNLLMQDD--VLFLVLDQITDAHNLGACLRTACAMGVDAVILPRHQSAPI 169
Query: 435 SGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTIL 494
+ V+K S G+ E++ + N+ + L ++G + G ++ A P E G +
Sbjct: 170 TPTVAKVSVGASEVIPVISVTNLARTLEKMKKSGVFIFGTALDKSAKPAFECDFGGKVAI 229
Query: 495 VLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESL 554
++GSEG G+R L + C LV IP E+ D +SL
Sbjct: 230 IMGSEGDGMRRLTQTMCDTLVYIP--------MAEVLD-----------------RPQSL 264
Query: 555 NVSVAAGVLLHHLV 568
NVSVA G++L+ ++
Sbjct: 265 NVSVATGMVLYEVM 278
>gi|405979468|ref|ZP_11037811.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces turicensis
ACS-279-V-Col4]
gi|404391884|gb|EJZ86945.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces turicensis
ACS-279-V-Col4]
Length = 329
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 74/242 (30%), Positives = 122/242 (50%), Gaps = 37/242 (15%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A +MG + E ++ DL++ HQG+ ++ E +++L S
Sbjct: 110 KDDR-VEEVIRLATHMGAPVFEVTRRDLDVATDGAVHQGVAVEVRGYEYSHVEDLIVGSF 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QKVGTPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+++ L +NG V+G G S + + L + P ++V G+EG GL
Sbjct: 229 PVARATNLVRALEECKKNGMFVIGLDGGGDASLRGLKLAD----APLVVVTGAEGAGLSR 284
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV +C +V IP + AVESLN +VA G+ L+
Sbjct: 285 LVRETCDQIVSIPIS----------------------------SAVESLNAAVATGIALY 316
Query: 566 HL 567
+
Sbjct: 317 EV 318
>gi|406666948|ref|ZP_11074711.1| Putative TrmH family tRNA/rRNA methyltransferase [Bacillus
isronensis B3W22]
gi|405385231|gb|EKB44667.1| Putative TrmH family tRNA/rRNA methyltransferase [Bacillus
isronensis B3W22]
Length = 287
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/267 (25%), Positives = 139/267 (52%), Gaps = 22/267 (8%)
Query: 253 RDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFY 312
RD K R +K + + + ++ +E S ++ GE + G PVL AL + RE
Sbjct: 12 RDFKGRDKKADTFKTHEKKQ------QEKPQSAQEEVTGEMIAGKNPVLEALRS-GREIN 64
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
L++ EG+ K G ++++ +A+ G+ ++ K ++ + N HQG+V
Sbjct: 65 KLWIAEGVK----------KTGVQELMDLAKEQGVLVQFVPKQKVDKLAEN--HQGIVAS 112
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+ + ++ +L ++ +++ ++ LDE+ DP NLG+I+R+A GA G+++ + +
Sbjct: 113 VAAYDYAELDDLFNVAKAKNEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAV 172
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQP 491
L+ VV+KAS+G++E + + N+ Q + + G W + G+ + + ++ P
Sbjct: 173 GLTAVVAKASTGAIEHVPVVRVTNLAQTVDELKDRGVW--IAGTDAKGSADYRKMDATLP 230
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIP 518
L++GSEG G+ L++ C L +P
Sbjct: 231 LALIIGSEGKGMSRLLKDKCDFLYHLP 257
>gi|383456948|ref|YP_005370937.1| RNA methyltransferase [Corallococcus coralloides DSM 2259]
gi|380734672|gb|AFE10674.1| RNA methyltransferase [Corallococcus coralloides DSM 2259]
Length = 266
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/249 (30%), Positives = 122/249 (48%), Gaps = 14/249 (5%)
Query: 270 QENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKK 329
+E S + + E P+ V +GV PVL AL A L++ +G +
Sbjct: 2 RERSSKPSSGERGGHEAPRYV----HGVNPVLEALRAHPDAVERLFIVDG---------Q 48
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K ++L A + G+ +++ + L + HQG+V + + V+++++ +
Sbjct: 49 VGAKAAGELLSRARDAGVRVEKVGRERLTSMAEGGVHQGVVAELRGFQYVELEDVLDAAK 108
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ Q +L V LD + DP NLGAIIRSA+ GA GVVL + ++G V+KAS+G++E
Sbjct: 109 AKKQPALVVVLDGIQDPHNLGAIIRSAHALGAHGVVLAKDRAVQVTGTVAKASAGAVEYC 168
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
+ N+ + L E G V V A PL P LV+G+EG G+R V +
Sbjct: 169 PIARVTNISRALEQLKEAGLWVAAADVEG-AEPLWSARLDGPLALVVGAEGAGVREGVLK 227
Query: 510 SCTHLVRIP 518
C +RIP
Sbjct: 228 HCDFRLRIP 236
>gi|398309198|ref|ZP_10512672.1| RlmB [Bacillus mojavensis RO-H-1]
Length = 249
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + + ++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEERNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVAKV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ + G P LV+GSEG G+ L++ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASARE-DYRTMDGGMPLALVIGSEGKGMGRLIKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|320108702|ref|YP_004184292.1| TrmH family RNA methyltransferase [Terriglobus saanensis SP1PR4]
gi|319927223|gb|ADV84298.1| RNA methyltransferase, TrmH family, group 3 [Terriglobus saanensis
SP1PR4]
Length = 263
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/278 (28%), Positives = 139/278 (50%), Gaps = 42/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ PV A+ ++ R+ + + +R++KD + + +++ A + GI I
Sbjct: 2 ELLYGLHPVQEAVRSRPRDLDHITI---------SRERKDAR-LDALVESARSAGIRITS 51
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++ + HQG++ + +++L + + Q ++ALD V DP NLGA
Sbjct: 52 EPRAQIDRMAKTEMHQGVIAFLRERRALAVEDLLAVQKPDGQRRFFLALDGVEDPHNLGA 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++R+A G G++L + SAP++ VV+K S+G+ E + + N+++ L ++ V
Sbjct: 112 LLRTADGAGVDGILLPERRSAPITAVVAKTSAGATEHVRIAKVTNLVRALERMKKDNIWV 171
Query: 472 LGGSVSSKAVPLNEIPPGQPT--ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
+G + + P PT +LVLGSEG GL LV+++C +L+RIP AG
Sbjct: 172 IG--LDERGTPDYTDFDFAPTDCVLVLGSEGAGLHDLVKKTCDYLLRIP-------MAG- 221
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V SLNVSVA V+++ +
Sbjct: 222 --------------------GVSSLNVSVAGAVVMYEV 239
>gi|315503474|ref|YP_004082361.1| TrmH family RNA methyltransferase [Micromonospora sp. L5]
gi|315410093|gb|ADU08210.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora sp. L5]
Length = 371
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 132/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PVL +L + ALY +G+ + ++R K+ +++ A + GI+I E
Sbjct: 127 ELLVGRNPVLESLRTQV-PATALYTAQGIDV--DDRVKE-------IIRTAADRGIAILE 176
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + G HQG+ L P +L +A E A L VALD VTDP+NLGA
Sbjct: 177 VSRAELDRMTGGVLHQGVGLQVPPFAYEPFDDLV-AAALEQAAPLLVALDGVTDPRNLGA 235
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV + + +A ++ + S+G+ + + N+ + L + E G+ V
Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + + P ++V+GSEG GL LV +C V IP +
Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIP----------MVS 345
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
D VESLN SVAA V L +
Sbjct: 346 D------------------VESLNASVAAAVTLAEV 363
>gi|291438845|ref|ZP_06578235.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
gi|291341740|gb|EFE68696.1| tRNA/rRNA methyltransferase [Streptomyces ghanaensis ATCC 14672]
Length = 313
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 126/253 (49%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 91 LYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 142
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + DED+ L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 143 PPYEYAHPEDLVAGAHDEDEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 202
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PT 492
++ K S+G+ + N+ + L + + G V+G + +A + E+ + P
Sbjct: 203 MTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGIVVVGLAADGEA-EIGELDALEGPV 261
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C VRIP +P G A E
Sbjct: 262 VIVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------E 293
Query: 553 SLNVSVAAGVLLH 565
SLN VAAG++L+
Sbjct: 294 SLNAGVAAGIVLY 306
>gi|434394316|ref|YP_007129263.1| RNA methyltransferase, TrmH family, group 3 [Gloeocapsa sp. PCC
7428]
gi|428266157|gb|AFZ32103.1| RNA methyltransferase, TrmH family, group 3 [Gloeocapsa sp. PCC
7428]
Length = 313
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 82/288 (28%), Positives = 137/288 (47%), Gaps = 43/288 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVLAAL ++ R +++ +R + D + + ++ A+ G I E
Sbjct: 64 IYGRHPVLAALESQ-RHLNRIWI--------TSRLRYDPR-FHSLISQAKEKGTVIDEVE 113
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + + HQG+ +P + EL + ++ + VA + +TDP NLGAII
Sbjct: 114 PKRLDQITHHANHQGIAAQIAPYAYSDLGELIEQAKAIAESPVIVAAEGITDPHNLGAII 173
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + +A ++ V KA++G+LE + N + L E G+ +
Sbjct: 174 RTAEAIGAQGLVIPQRRAAGITSSVMKAAAGALEKFPVARVVNFSRALEELKEAGFWIY- 232
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
G+ ++ + PL+ + P +LV+G+EG GL L +R C LV IP G+ P
Sbjct: 233 GTAATASQPLHTVQFTGPVVLVIGAEGEGLSLLTQRCCDVLVSIPLLGDTP--------- 283
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIE 579
SLN SVAAG+ L+ + + N H+E
Sbjct: 284 ---------------------SLNASVAAGMALYEIFRQRWLNMLHLE 310
>gi|220917468|ref|YP_002492772.1| TrmH family RNA methyltransferase [Anaeromyxobacter dehalogenans
2CP-1]
gi|219955322|gb|ACL65706.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter
dehalogenans 2CP-1]
Length = 256
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/226 (31%), Positives = 114/226 (50%), Gaps = 12/226 (5%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PV L A + +++ EG + + + ++ ++ G ++
Sbjct: 4 VYGVNPVRELLRAGGGDVAEVWLAEGGTRGA---------AFAELERLGRGAGAKVRAAP 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ + G HQG+V + ++++L + + L V LD V DP NLGAII
Sbjct: 55 RAKLDRLAGTDRHQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAII 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA+ G+ GVV+ + ++ V+KAS+G++E + N+ + L E G W V
Sbjct: 115 RSAHALGSHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVA 174
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ + PL E+ PT LVLGSEG G+RPLV R+C RIP
Sbjct: 175 LAADGER--PLGEVDLKGPTALVLGSEGEGIRPLVRRTCDLSARIP 218
>gi|395775662|ref|ZP_10456177.1| RNA methyltransferase [Streptomyces acidiscabies 84-104]
Length = 312
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 123/253 (48%), Gaps = 36/253 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LY+Q+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 90 LYIQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 141
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D + L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 142 PPYEYAHSEDLAAAAYDAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 201
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K+S+G+ + N+ + L + + G V+G + ++ G P +
Sbjct: 202 MTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGVTVVGLAADGESEVGTLAALGGPVV 261
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG GL LV +C + VRIP +P G A ES
Sbjct: 262 IVVGSEGKGLSRLVGETCDYRVRIP--MP-----------------GGA---------ES 293
Query: 554 LNVSVAAGVLLHH 566
LN VAAG++L+
Sbjct: 294 LNAGVAAGIVLYE 306
>gi|297581438|ref|ZP_06943361.1| RNA methyltransferase [Vibrio cholerae RC385]
gi|422923887|ref|ZP_16957023.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
BJG-01]
gi|297534276|gb|EFH73114.1| RNA methyltransferase [Vibrio cholerae RC385]
gi|341642910|gb|EGS67208.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
BJG-01]
Length = 247
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQYEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|123966264|ref|YP_001011345.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9515]
gi|123200630|gb|ABM72238.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9515]
Length = 349
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/181 (30%), Positives = 107/181 (59%), Gaps = 1/181 (0%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+LK ++ G+ ++E S L+ + HQG+ L + + + + +L I+ + ++
Sbjct: 146 LLKDLKSKGVLVEEVSWSRLSQLTSGAVHQGVALQLATSQTLSLDKLIGITKSKSNNPIF 205
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
VALD +TDP NLGAIIRSA F G+++ + SA L+G V+K ++G+LE + + N+
Sbjct: 206 VALDGITDPHNLGAIIRSAEAFDCKGIIIPQRRSAGLTGTVAKVAAGALEHIPVSRVVNL 265
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ + +NG+ ++G S + +P+++ P ++V+G+E G+ L ++ C +L++I
Sbjct: 266 NRAIDELKKNGFLIVGLSGDGQ-IPISKFDQKAPIVVVVGAENKGISLLTQKKCDYLLKI 324
Query: 518 P 518
P
Sbjct: 325 P 325
>gi|374298147|ref|YP_005048338.1| rRNA methylase, putative, group 3 [Clostridium clariflavum DSM
19732]
gi|359827641|gb|AEV70414.1| rRNA methylase, putative, group 3 [Clostridium clariflavum DSM
19732]
Length = 275
Score = 106 bits (265), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 106/191 (55%), Gaps = 2/191 (1%)
Query: 329 KKDKKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K DK+G ++++ +A GI ++ET + L+ + HQG++ + E V+++++ I
Sbjct: 59 KGDKEGSIKQIIALAREKGIVVQETDRISLDKISATHAHQGVIAFVAAKEYVEVEDILEI 118
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ + + + LD +TDPQNLG+I+R+A GA GVV+ + + L+ VSKAS+G++E
Sbjct: 119 AKSKGEDPFVILLDGITDPQNLGSILRTADAVGAHGVVIPKRRAIGLTAAVSKASAGAIE 178
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+ + N+ Q + E ++G +S + E P LV+GSEG G+ LV
Sbjct: 179 YVPVARVTNLSQTIEYLKEQNLWIVGTDLSGEK-SFFEADLKGPVALVIGSEGEGMSRLV 237
Query: 508 ERSCTHLVRIP 518
C +V IP
Sbjct: 238 SEKCDFIVNIP 248
>gi|302870247|ref|YP_003838884.1| TrmH family RNA methyltransferase [Micromonospora aurantiaca ATCC
27029]
gi|302573106|gb|ADL49308.1| RNA methyltransferase, TrmH family, group 3 [Micromonospora
aurantiaca ATCC 27029]
Length = 371
Score = 106 bits (264), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 132/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PVL +L + ALY +G+ + ++R K+ +++ A + GI+I E
Sbjct: 127 ELLVGRNPVLESLRTQV-PATALYTAQGIDV--DDRVKE-------IVRTAADRGIAILE 176
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + G HQG+ L P +L +A E A L VALD VTDP+NLGA
Sbjct: 177 VSRAELDRMTGGVLHQGVGLQVPPFAYEPFDDLV-AAALEQAAPLLVALDGVTDPRNLGA 235
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV + + +A ++ + S+G+ + + N+ + L + E G+ V
Sbjct: 236 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACKEAGFVV 295
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + + P ++V+GSEG GL LV +C V IP +
Sbjct: 296 VGLDADGQTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIP----------MVS 345
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
D VESLN SVAA V L +
Sbjct: 346 D------------------VESLNASVAAAVTLAEV 363
>gi|194476711|ref|YP_002048890.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Paulinella chromatophora]
gi|171191718|gb|ACB42680.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Paulinella chromatophora]
Length = 526
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 102/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++LK + + ++E S L ++G HQG+ L + +E + + +L +
Sbjct: 224 FLQLLKKVKASSVLVEEVSWARLGQLIGGSGHQGIALQMAAVETLDLTKLIEDCCHLGEN 283
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +A++ +TDP NLGAI+RSA GA G++L + +A L+G V+K ++G+LE + +
Sbjct: 284 PLLMAVEGLTDPHNLGAIVRSAEALGAHGLILPQRRNAGLTGSVAKVAAGALEHLPVARV 343
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L + G+R++G + V L E P ++V GSEG GL L R C L
Sbjct: 344 VNLNRSLDILKDKGYRIVGLATEGD-VSLTEADLNGPLVIVTGSEGNGLSLLTRRYCDQL 402
Query: 515 VRIP 518
+RIP
Sbjct: 403 IRIP 406
>gi|311070743|ref|YP_003975666.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
gi|419823192|ref|ZP_14346752.1| 23S rRNA methyltransferase [Bacillus atrophaeus C89]
gi|310871260|gb|ADP34735.1| 23S rRNA methyltransferase [Bacillus atrophaeus 1942]
gi|388472723|gb|EIM09486.1| 23S rRNA methyltransferase [Bacillus atrophaeus C89]
Length = 249
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 133/259 (51%), Gaps = 40/259 (15%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
RE Y L++ E N K + ++V+++A+ GI+I+ + L+ +V + HQG
Sbjct: 22 RELYKLWMAE------NTVKGQA----QQVIELAKKQGITIQYVPRKKLDQMVSGQ-HQG 70
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+V + E ++ +L + ++++ ++ LDE+ DP NLG+I+R+A GA G+V+
Sbjct: 71 IVAQVAAYEYAELDDLYKRAEEKNEQPFFLVLDELEDPHNLGSIMRTADAVGAHGIVIPK 130
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ + L+ V+KAS+G++E + + N+ + L E G V+G S++ +
Sbjct: 131 RRAVGLTTTVAKASTGAIEHIPVVKVTNLARTLEEMKERGIWVVGTDASARE-DYRTMDG 189
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P LV+GSEG G+ LV+ C L+++P AG+
Sbjct: 190 TMPLALVIGSEGKGMGRLVKEKCDFLIKLP-------MAGK------------------- 223
Query: 549 MAVESLNVSVAAGVLLHHL 567
V SLN SVAAG+L++ +
Sbjct: 224 --VTSLNASVAAGLLMYEI 240
>gi|241204147|ref|YP_002975243.1| TrmH family RNA methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240858037|gb|ACS55704.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
leguminosarum bv. trifolii WSM1325]
Length = 296
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 137/284 (48%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPHKRKR--GGDDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D E +G+ + S +++ V
Sbjct: 73 RAALDNPERKKITLFVTQ----NALARLEVD----------VEALGMPFEIVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------ESPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G+ LVLGSEG GLR + L R+ PG I
Sbjct: 231 PAPLEGTFSGEKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|407776030|ref|ZP_11123320.1| rRNA methylase [Thalassospira profundimaris WP0211]
gi|407280889|gb|EKF06455.1| rRNA methylase [Thalassospira profundimaris WP0211]
Length = 290
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 133/276 (48%), Gaps = 44/276 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G PV+ A++ R + ++ E N R + L AE I++
Sbjct: 54 LFGRHPVMMAIANPQRTIHKIWATE------NTRDE-----VMAALADAERDDIAVDSAG 102
Query: 354 KHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ DL+ M+ HQG+ + +PL + ++EL D +Q ++ + LD+VTDP N+GAI
Sbjct: 103 RTDLDEMLPPGTVHQGMAMHCAPLPQLSVEELIADHRDSEQCTVLI-LDQVTDPHNVGAI 161
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS-SAENGWRV 471
+RSA FGAS V++ +++ P +GV++K++SG+LE + + N+ Q L + W
Sbjct: 162 LRSAAAFGASAVIVPDRHAPPETGVLAKSASGALETVPYIHAGNLNQTLDKLKGAHFW-- 219
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
L G L E +V+GSEG GLR L SC LV++P +
Sbjct: 220 LAGMDGYAEQTLAEAKLHGRVGIVMGSEGEGLRRLTRESCDFLVKLP-----------MS 268
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
D +ESLNVS AA V L+ L
Sbjct: 269 D-----------------RIESLNVSNAAAVALYEL 287
>gi|206900244|ref|YP_002251183.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
thermophilum H-6-12]
gi|206739347|gb|ACI18405.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus
thermophilum H-6-12]
Length = 241
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 132/274 (48%), Gaps = 43/274 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG VL AL + +Y+ +G+ D K + ++L +A+ G+ IK
Sbjct: 5 IYGKNAVLEALKSNI-PLNKIYIAKGIHF--------DNK-FNEILNLAKEKGVPIKYVE 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ + +VG L + +S V +E + I + S+ V LD + DP NLGAI
Sbjct: 55 RSVIEKMVGGNSQGVLAIISS----VPYREWEDIEKTLNNKSVIVVLDHIQDPHNLGAIA 110
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R++ F GAS +V+ SA ++ KAS+G+L + + +N+ FL + GW ++G
Sbjct: 111 RTSEFAGASAIVIPKARSAGVTSASFKASAGALSYIPVVRVSNIANFLRELKKKGWFIVG 170
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ ++ + N++ P LV+GSE GL +V+ SC LV+IP
Sbjct: 171 ADLDTENL-YNQVNYRFPLALVVGSEDEGLHRIVKESCDLLVKIP--------------- 214
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
S+ VESLNVSVA G++L+ +
Sbjct: 215 -------------SYGKVESLNVSVALGIILYKI 235
>gi|269796449|ref|YP_003315904.1| rRNA methylase , group 3 [Sanguibacter keddieii DSM 10542]
gi|269098634|gb|ACZ23070.1| rRNA methylase, putative, group 3 [Sanguibacter keddieii DSM 10542]
Length = 339
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 134/272 (49%), Gaps = 46/272 (16%)
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
VL AL A+ +Y+ G L +++R ++ +L++A G ++ E +K +L+
Sbjct: 102 VLEALRARI-PVTTVYI--GTRLEADDRTRE-------ILQIASGRGYNLLEVTKPELDR 151
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+ + HQG+ + P E ++L I+A+ +Q +L VALD VTDP+NLGA++RSA F
Sbjct: 152 LTDDSVHQGVAIQVPPYEYRDPEDLLDIAAELEQPALIVALDGVTDPRNLGAVLRSAGAF 211
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL----GGS 475
GA GV++ + SA ++ K S+G+ + + N+ + L+ G ++ GG
Sbjct: 212 GAHGVLVPERRSAGVTASAWKVSAGAAARVPVARATNLTRTLLEYKSAGCFIVGLDGGGE 271
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
VS + + P +LV+GSEG GL LV +C + IP
Sbjct: 272 VSVGDLAFSV----DPIVLVVGSEGKGLSRLVRETCDAIASIP----------------- 310
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AVESLN VAAG+ L+ +
Sbjct: 311 -----------IASAVESLNAGVAAGIALYEV 331
>gi|429885977|ref|ZP_19367544.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
PS15]
gi|429227123|gb|EKY33178.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
PS15]
Length = 247
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/287 (31%), Positives = 130/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVVAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|428203166|ref|YP_007081755.1| rRNA methylase [Pleurocapsa sp. PCC 7327]
gi|427980598|gb|AFY78198.1| rRNA methylase, putative, group 3 [Pleurocapsa sp. PCC 7327]
Length = 312
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 80/274 (29%), Positives = 130/274 (47%), Gaps = 14/274 (5%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAAL 304
K+R S D K R P R +N + P V + + +YG PV+AAL
Sbjct: 3 QKKRQSRETDPKKRRIIPAK---GRTDNFPASRKHLPTPQVVEEEASDLVYGRHPVIAAL 59
Query: 305 SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
+ R+ +++ L S + +L+ A+ G I E + L+ +
Sbjct: 60 ESD-RQLNRIWIVPKLRYDSR---------FLSLLQDAKAKGTVIDEVDSYRLDRITHGA 109
Query: 365 PHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGV 424
HQG+ +P +++ +L + S+ V D +TDP NLGAIIR+A FGA G+
Sbjct: 110 NHQGIAAQIAPHAYIELADLIERAKATTPESVIVIADGITDPHNLGAIIRTAEAFGAQGL 169
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN 484
++ + +A ++ V K ++G+LE + N+ + L ++G+ + G + S PL+
Sbjct: 170 IIPQRRAAGITSTVMKVAAGALEHFPVARVVNLTRALEELKQSGFWIYGTAAGS-GKPLH 228
Query: 485 EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
I LV+GSEG GL L +RSC LV IP
Sbjct: 229 SIKWHGAIGLVIGSEGEGLSLLTQRSCDELVTIP 262
>gi|220924093|ref|YP_002499395.1| tRNA/rRNA methyltransferase SpoU [Methylobacterium nodulans ORS
2060]
gi|219948700|gb|ACL59092.1| tRNA/rRNA methyltransferase (SpoU) [Methylobacterium nodulans ORS
2060]
Length = 259
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/260 (30%), Positives = 128/260 (49%), Gaps = 36/260 (13%)
Query: 268 NRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNR 327
+R+ SG + AAP+ +++ LYG PV AL R + L E
Sbjct: 10 DRRHRSG--ADRRAAPAGDDRII---LYGWHPVTEALRNPGRGLHRLLATE--------- 55
Query: 328 KKKDKKGYEKVLKMAENMG---ISIKETSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKE 383
+ ++A +G I + +++ +VG + HQGL L+A PL
Sbjct: 56 --------NALARLAAELGELRIVPQMVRPGEISALVGPDAVHQGLYLEAEPLRAPAFDT 107
Query: 384 LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
L P ++ +ALD++TDP N+GAI+R+A F + +V A++S +GV++K++S
Sbjct: 108 LPP-------DAVLLALDQITDPHNVGAIVRTAAAFNVTAIVTTARHSPAATGVLAKSAS 160
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G LE + N+ + L+ E G+ +G S VPL+++ P P ++VLG+EG GL
Sbjct: 161 GGLEHVPFVTVRNLAEALIDLGERGFTRIGLD-SEAPVPLDQVTPAPPLVIVLGAEGKGL 219
Query: 504 RPLVERSCTHLVRI--PGNI 521
R C + R+ PG I
Sbjct: 220 RQRTRECCDVMARLDFPGAI 239
>gi|308271789|emb|CBX28397.1| Putative trmH family tRNA/rRNA methyltransferase yacO [uncultured
Desulfobacterium sp.]
Length = 270
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/257 (29%), Positives = 121/257 (47%), Gaps = 20/257 (7%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ PV A+ A R+ Y +Y+ K+KD + K+AE I +
Sbjct: 19 EILYGIHPVFEAVRAGRRKVYEIYIA----------KQKDSTLLRNISKLAEPAKIPLIS 68
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
L + G+ Q + S ++ +++ S + + LD V DPQNLGA
Sbjct: 69 VKPDHLTKITGSDFQQNIAAKVSEYPLIAFEDILN-SITQKNYDFLLLLDTVVDPQNLGA 127
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+ R+A G SG+V+ SA + VSKAS+G+LE + L NM+ + + G V
Sbjct: 128 LARTALCAGVSGIVITKDRSASPTPAVSKASAGALEHIFLSKVTNMVSSIKEMKDRGIWV 187
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + +P+ P LV+GSEG G+R LV+ +C LV IP GE+
Sbjct: 188 VGMDAMAD-MPVFSCDLKGPIALVIGSEGKGIRQLVKANCDFLVSIPQK-------GEVS 239
Query: 532 DVDADGNHGSAEQFQSF 548
++A G+ ++ F
Sbjct: 240 SLNASA-AGAVAMYEVF 255
>gi|119718239|ref|YP_925204.1| RNA methyltransferase [Nocardioides sp. JS614]
gi|119538900|gb|ABL83517.1| RNA methyltransferase, TrmH family, group 3 [Nocardioides sp.
JS614]
Length = 314
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 74/209 (35%), Positives = 112/209 (53%), Gaps = 17/209 (8%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+YV EG ++D + E AE ++I+E S+ +L+ + G HQGL
Sbjct: 93 VYVAEG--------AERDGRLREAFATAAERR-LNIQEVSRGELDRMTGGAVHQGLAARI 143
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E +L +A+ L VALD VTDP+NLGA++RSA FGA GVV+ + SA
Sbjct: 144 PPYEYAHPDDLLDAAAESGAPPLIVALDSVTDPRNLGAVVRSASGFGAHGVVIPERRSAG 203
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPG 489
++ K S+G+ + + N+++ L + E G V+G G VS +P ++ G
Sbjct: 204 MTASAWKTSAGAAARLPVAQTVNLVRQLKAYQEAGCMVVGLAADGDVS---LPDLDLADG 260
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIP 518
P ++V+GSEG+GL LV +C LV IP
Sbjct: 261 -PLVVVVGSEGSGLSRLVSETCDQLVSIP 288
>gi|262189979|ref|ZP_06048286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
CT 5369-93]
gi|262034136|gb|EEY52569.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
CT 5369-93]
Length = 247
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQG++ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGVIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|227489408|ref|ZP_03919724.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227541002|ref|ZP_03971051.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51866]
gi|227090586|gb|EEI25898.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51867]
gi|227183262|gb|EEI64234.1| tRNA/rRNA methyltransferase [Corynebacterium glucuronolyticum ATCC
51866]
Length = 302
Score = 106 bits (264), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/278 (32%), Positives = 133/278 (47%), Gaps = 45/278 (16%)
Query: 287 PKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG 346
P M E + G PV+ L AK A++V G K D++ E V +A +
Sbjct: 51 PNMSDELVVGRNPVIECLHAKVPAV-AMFVAIG--------TKNDQRLVEAV-NIAASRS 100
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
I I E SK L+ + GN HQG+ L +++L I+ D + V LD +TDP
Sbjct: 101 IPIVEVSKQKLDEMTGNGLHQGIGLQIPEYHYADLEDL--ITHD----GMVVFLDNITDP 154
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLGA+IRS FGA GVV+ + SA ++ V ++S+G+ + + NM + L E
Sbjct: 155 RNLGAVIRSVAAFGADGVVIPERRSASVTAVTWRSSAGTAARVPVAKVTNMTRALKQFQE 214
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
G++ +G + + G P ++V+GSEG GL LV+ +C +V IP
Sbjct: 215 AGYQAIGLDAGGEHTHDSYDGTG-PVVIVVGSEGKGLSRLVKETCDTIVTIP-------- 265
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+ + VESLN SVAAGV+L
Sbjct: 266 ------------------MEGW--VESLNASVAAGVVL 283
>gi|402486102|ref|ZP_10832934.1| TrmH family RNA methyltransferase [Rhizobium sp. CCGE 510]
gi|401814758|gb|EJT07088.1| TrmH family RNA methyltransferase [Rhizobium sp. CCGE 510]
Length = 296
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 93/301 (30%), Positives = 142/301 (47%), Gaps = 35/301 (11%)
Query: 224 KNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAP 283
K+ GTA + + D+ + R + R + R E P Q R+ G WK P
Sbjct: 6 KSGGTAATD----PSAKDTHYATLRRAHRDAKRERGEIPTPQPQKRKR--GPEDWK--PP 57
Query: 284 STVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE 343
+ P V LYG+ V AAL R+ L+V + ++ R + D E
Sbjct: 58 TLAPDQVH--LYGLHTVRAALDNSERKKIKLFVTQ----NALARLEVD----------VE 101
Query: 344 NMGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDE 402
+GI + S +++ V+G HQG++L+ PL + +++ L + L + LD+
Sbjct: 102 TLGIPFEMVSPQEIDKVLGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQ 154
Query: 403 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLV 462
VTDP N+GAI+RSA F A V+ ++S SGV++K++SG+LEL+ N+ L
Sbjct: 155 VTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALG 214
Query: 463 SSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGN 520
+ G+ +G S PL G LVLGSEG GLR + L R+ PG
Sbjct: 215 ELNKLGFSTIGLD-SEGPAPLEGTFSGGKVALVLGSEGKGLRQKTRETVNALARLDMPGA 273
Query: 521 I 521
I
Sbjct: 274 I 274
>gi|190891338|ref|YP_001977880.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
652]
gi|190696617|gb|ACE90702.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli CIAT
652]
Length = 296
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 90/284 (31%), Positives = 136/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYANLRRAHRDAKRERGEIPTPQPQKRKR--GAEDWK--PPALAPDQVY--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L V + ++ R + D E +GI + + H+++ V
Sbjct: 73 RAALDNPERKKIKLSVTQ----NALARLEID----------IEPLGIPFEIVAPHEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G LVLGSEG GLR + T L R+ PG I
Sbjct: 231 PAPLEGTFSGDKLALVLGSEGKGLRQKTRETVTALARLDMPGAI 274
>gi|393198921|ref|YP_006460763.1| rRNA methylase [Solibacillus silvestris StLB046]
gi|327438252|dbj|BAK14617.1| rRNA methylase [Solibacillus silvestris StLB046]
Length = 287
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/267 (26%), Positives = 137/267 (51%), Gaps = 22/267 (8%)
Query: 253 RDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFY 312
RD K R +K + + + ++ +E S ++ GE + G PVL AL A RE
Sbjct: 12 RDFKGRDKKADTFKTHEKKQ------QEKPQSAQEELSGEMIAGKNPVLEALRA-GREIN 64
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
L++ EG+ K G ++++ +A+ G+ ++ K ++ + N HQG+V
Sbjct: 65 KLWIAEGVK----------KTGVQELMDLAKEQGVLVQFVPKQKVDKLAEN--HQGIVAS 112
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+ + ++ +L + + + ++ LDE+ DP NLG+I+R+A GA G+++ + +
Sbjct: 113 VAAYDYAELDDLFAAAKAKSEDPFFLILDELEDPHNLGSIMRTADAIGAHGIIIPKRRAV 172
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQP 491
L+ VV+KAS+G++E + + N+ Q + + G W + G+ + + ++ P
Sbjct: 173 GLTAVVAKASTGAIEHVPVVRVTNLAQTVDELKDRGVW--IAGTDAKGSADYRKMDATLP 230
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIP 518
L++GSEG G+ L++ C L +P
Sbjct: 231 LALIIGSEGKGMSRLLKDKCDFLYHLP 257
>gi|317507828|ref|ZP_07965529.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
gi|316253870|gb|EFV13239.1| RNA methyltransferase [Segniliparus rugosus ATCC BAA-974]
Length = 297
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV L AK L V G+ D++ E V ++A N G+ + E
Sbjct: 53 EWVLGRNPVFECLRAKV-PAVELLVASGID--------ADERVAESV-RLAGNAGVPVTE 102
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ +L+ PHQG+ L P E +L + D + +L VALD ++DP+NLGA
Sbjct: 103 VARFELDRRSSGAPHQGIGLKVKPYEYRHPADLLVEAEDSGRPALMVALDHISDPRNLGA 162
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FG GV++ + SA L+ + + S+G+ + + N+ + L + G +
Sbjct: 163 VIRSAAAFGGHGVLIPNRRSASLTAIAWRTSAGAAARLPVAQAPNLTRTLKEWQDRGLLL 222
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L++ +P LV+GSEG GL LV SC +V IP +G+
Sbjct: 223 VGLDAEGD-TSLDDFVGTEPLALVVGSEGKGLSRLVRESCDVVVSIP-------MSGQ-- 272
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLNVSVA GV+L +
Sbjct: 273 -------------------VESLNVSVATGVVLGEI 289
>gi|419834708|ref|ZP_14358161.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-61A2]
gi|408648497|gb|EKL19837.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-61A2]
Length = 243
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 87/282 (30%), Positives = 129/282 (45%), Gaps = 42/282 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V A L F YV +G ++D + VL +G+SI+E S
Sbjct: 2 IYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVSIQEMS 51
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ HQGL+ P + +LD I A +Q L V LD VTDP NLGA +
Sbjct: 52 RKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHNLGACL 110
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G W V
Sbjct: 111 RNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV- 169
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G+ + + P +V+G+EG G+R L +C L++IP AG
Sbjct: 170 -GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG---- 217
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
+V SLNVSVA GV L V +++N
Sbjct: 218 -----------------SVSSLNVSVACGVCLFEAVRQRMAN 242
>gi|415714813|ref|ZP_11465640.1| tRNA/rRNA methyltransferase protein [Gardnerella vaginalis 1400E]
gi|388058869|gb|EIK81641.1| tRNA/rRNA methyltransferase protein [Gardnerella vaginalis 1400E]
Length = 329
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 91 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 149
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D SA + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 150 DRAEKKSRAMEAADSASARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 209
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 210 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 269
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 270 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 301
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 302 ESLNASVAAGISLY 315
>gi|308070995|ref|YP_003872600.1| tRNA/rRNA methyltransferase [Paenibacillus polymyxa E681]
gi|305860274|gb|ADM72062.1| Hypothetical tRNA/rRNA methyltransferase [Paenibacillus polymyxa
E681]
Length = 248
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 120/228 (52%), Gaps = 30/228 (13%)
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
A+ GI + + K L+ +V HQG+V A+P V+++EL + D+ + + LD
Sbjct: 43 AKKAGIIVLQVDKRKLDQMVPGIQHQGVVAQAAPFAYVEVEELLATARDKGEEPFLILLD 102
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
E+ DP NLG+I+R+A GA GV++ + SA ++ VSK S+G++E + + NN+ Q +
Sbjct: 103 EIEDPHNLGSILRTADCTGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTI 162
Query: 462 VSSAENGWRVLGGSVS-SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
E G V+G V+ + V N + G P +V+G+E G+ L+ C LV++P
Sbjct: 163 DRLKEEGVWVVGTDVTATDPVFGNGVFTG-PVAIVIGNENKGMGRLIREKCDVLVKLP-- 219
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AG+I+ SLN SVAAGV+++ ++
Sbjct: 220 -----MAGQIN---------------------SLNASVAAGVVMYEVL 241
>gi|452994662|emb|CCQ93772.1| 23S rRNA methyltransferase [Clostridium ultunense Esp]
Length = 249
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 12/227 (5%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG P + A+ + R ++V EG+ S+ K YE+ A+ GI I++
Sbjct: 5 EIIYGKNPAIEAIRS-GRAINKIWVAEGIKPSAV------KGIYEE----AKKRGIVIQQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + HQG+++ + ++ +L ++ D ++ LD + DP NLG+
Sbjct: 54 VPRSRLDQAAETKNHQGILIFLAAHSYYELDDLLRLTRQMDTPPFFIMLDGIEDPHNLGS 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA G GV++ + +APL+ V+K+S+G++E + + N+ Q + ENG+ V
Sbjct: 114 ILRSADGAGLHGVMIPKRRAAPLTPAVAKSSAGAIEYVPVARITNLSQAIDELKENGFWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G ++K E +PT+LV+G+EG G+ LV+ C LV++P
Sbjct: 174 IGTDANAK-TDYREADYTRPTLLVIGNEGKGISRLVKEKCDFLVKLP 219
>gi|197122685|ref|YP_002134636.1| TrmH family RNA methyltransferase [Anaeromyxobacter sp. K]
gi|196172534|gb|ACG73507.1| RNA methyltransferase, TrmH family, group 3 [Anaeromyxobacter sp.
K]
Length = 256
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PV L A + +++ EG + + + ++ ++ G ++
Sbjct: 4 VYGVNPVRELLRAGGGDVAEVWLAEGGTRGAA---------FAELERLGRGAGAKVRGAP 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ + G HQG+V + ++++L + + L V LD V DP NLGAII
Sbjct: 55 RAKLDRLAGTDRHQGVVAVVADFRYAELEDLLARAQAGGRPPLLVVLDGVEDPHNLGAII 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA+ GA GVV+ + ++ V+KAS+G++E + N+ + L E G W V
Sbjct: 115 RSAHALGAHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVA 174
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ + PL E PT LVLGSEG G+RPLV R+C RIP
Sbjct: 175 LAADGER--PLGEADLKGPTALVLGSEGEGIRPLVRRTCDLSARIP 218
>gi|302544420|ref|ZP_07296762.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
hygroscopicus ATCC 53653]
gi|302462038|gb|EFL25131.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
himastatinicus ATCC 53653]
Length = 317
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 149/326 (45%), Gaps = 44/326 (13%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG-----EGLYGVGP 299
KRR + K T E ++ + ++ ++AA P+ G E + G P
Sbjct: 24 GKRRRGL--EGKGPTPPAEARKGHAKQRIANARTRQAAKRPAPRRGGAKGTNELVVGRNP 81
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
V+ AL LYVQ+ + S++R + E + A+ GI + E K +L+
Sbjct: 82 VVEALREGV-PANTLYVQQ--FIDSDDRVR------EGLKIAADRGGIHLMEAPKAELDR 132
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+ HQG+VL P + ++L + D+ + L VALD VTDP+NLGA++RS F
Sbjct: 133 MTNGLNHQGMVLQVPPYDYAHPEDLSAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVSAF 192
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
G GVV+ + +A ++ K S+G+ + N+ + L S + G V+G + +
Sbjct: 193 GGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALESYQKAGLTVVGLAADGE 252
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNH 539
+ P ++V+GSEG GL LV +C VRIP +P
Sbjct: 253 TELQDLEALDGPVVIVVGSEGKGLSRLVGETCDFRVRIP--MP----------------- 293
Query: 540 GSAEQFQSFMAVESLNVSVAAGVLLH 565
G A ESLN VAAGV+L+
Sbjct: 294 GGA---------ESLNAGVAAGVVLY 310
>gi|327308270|ref|XP_003238826.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
gi|326459082|gb|EGD84535.1| hypothetical protein TERG_00813 [Trichophyton rubrum CBS 118892]
Length = 505
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/309 (26%), Positives = 134/309 (43%), Gaps = 74/309 (23%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETS---KHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
K +D+ + K A G +K + K L+ + G RPH G+VL+ASPL +
Sbjct: 204 KSEDEPEIRAIAKYASLAGAQVKHVTGPWKTTLDKMTGKRPHNGMVLEASPLPKPPVLSF 263
Query: 385 DPI-------------SADEDQAS-----------------------LWVALDEVTDPQN 408
+ + E+QA+ + LD + DP N
Sbjct: 264 QTVVSKSNSHFLAQLAAQPEEQAAVNGTDGHIQFDARRKDSKASRFPFTLLLDGILDPGN 323
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGAI RSAY+FGA + ++NSAP+S VV KA++G+ E + + ++ F+ +S NG
Sbjct: 324 LGAIFRSAYWFGADAIAFSSQNSAPISPVVMKAAAGATEAIPILSVRDVSTFMTASQANG 383
Query: 469 WRVLGGSVS--------SKAVP-LNEIPP------GQPTILVLGSEGTGLRPLVERSCTH 513
W+ ++ +P +N + P +L+LG EG+GL+ ++
Sbjct: 384 WKFFAADAPDATLVNDYTRKIPVINSLEALASELTKAPCVLMLGGEGSGLQQKIKNRADS 443
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ-V 572
V IPG ++ DD V SLNVSVA+ +L + +
Sbjct: 444 FVTIPGAYSANIR----DDT---------------AGVSSLNVSVASALLCEAFLSRRPP 484
Query: 573 SNNSHIEDS 581
S+++ +DS
Sbjct: 485 SSSAETQDS 493
>gi|297243268|ref|ZP_06927203.1| rRNA methylase [Gardnerella vaginalis AMD]
gi|415710646|ref|ZP_11463852.1| tRNA/rRNA methyltransferase protein [Gardnerella vaginalis 6420B]
gi|296888802|gb|EFH27539.1| rRNA methylase [Gardnerella vaginalis AMD]
gi|388055323|gb|EIK78237.1| tRNA/rRNA methyltransferase protein [Gardnerella vaginalis 6420B]
Length = 332
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 120/254 (47%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 93 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYHSLQELV 151
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D SA + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 152 ERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + S E GW +G + P
Sbjct: 212 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQSLRERGWYAIGLDGGGDKLVGETGFETDP 271
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 272 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 303
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 304 ESLNASVAAGISLY 317
>gi|326385529|ref|ZP_08207168.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
nitrogenifigens DSM 19370]
gi|326210068|gb|EGD60846.1| RNA methyltransferase TrmH, group 3 [Novosphingobium
nitrogenifigens DSM 19370]
Length = 304
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 66/162 (40%), Positives = 97/162 (59%), Gaps = 9/162 (5%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVLD SPLE + + E+ DE + V LD+VTDP N+GAI+R+
Sbjct: 104 LVARDAPHQGLVLDCSPLEDIALDEV----LDEAEGRTLVILDQVTDPHNVGAILRTCAA 159
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV-LGGSV 476
F + ++ +++ P SG ++KA+SG+LE++ N+ + L S AE G WR+ L G
Sbjct: 160 FDVAAMITQDRHAPPESGTLAKAASGALEVVPWVRVVNLSRALESIAEAGYWRIALDG-- 217
Query: 477 SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
KA + +P G P LVLG+EG GLR V + C + R+P
Sbjct: 218 EGKAEFPSALPTG-PVALVLGAEGEGLRHNVLQHCDSVARLP 258
>gi|237784961|ref|YP_002905666.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
gi|237757873|gb|ACR17123.1| putative rRNA methylase [Corynebacterium kroppenstedtii DSM 44385]
Length = 320
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 131/275 (47%), Gaps = 43/275 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L AK ALYV EG + N+ + + +++A + I++ E
Sbjct: 72 ELVVGRNPVVECLRAKV-SATALYVAEG---TDNDDR------LTEAVRVAGDRAITVLE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ + GN HQGL L + V +++L + L V LD +TDP+NLGA
Sbjct: 122 VPRIELDRMTGNGMHQGLGLLVPEYQYVDVQDLIDRAHASSSTGLIVCLDNITDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GVV+ + SA ++ V + S+G+ + + NM + L + G++V
Sbjct: 182 VIRSVAAFGGHGVVIPERRSASVTAVAWRTSAGTAARLPVAKATNMTRALKQFQKEGYQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ P ++V+GSEG GL LV +C ++ IP
Sbjct: 242 VGLDAGGDHT-LDTYDGTTPVVVVVGSEGKGLSRLVSETCDTIMSIP------------- 287
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLL 564
MA VESLN SVAAGV+L
Sbjct: 288 -----------------MADNVESLNASVAAGVVL 305
>gi|16077164|ref|NP_387977.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
168]
gi|221307908|ref|ZP_03589755.1| hypothetical protein Bsubs1_00500 [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312229|ref|ZP_03594034.1| hypothetical protein BsubsN3_00495 [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221317163|ref|ZP_03598457.1| hypothetical protein BsubsJ_00500 [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221321426|ref|ZP_03602720.1| hypothetical protein BsubsS_00500 [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402774339|ref|YP_006628283.1| 23S rRNA methyltransferase [Bacillus subtilis QB928]
gi|452916601|ref|ZP_21965223.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Bacillus subtilis MB73/2]
gi|586908|sp|Q06753.2|YACO_BACSU RecName: Full=Putative TrmH family tRNA/rRNA methyltransferase YacO
gi|467483|dbj|BAA05329.1| unknown [Bacillus subtilis]
gi|2632363|emb|CAB11872.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
168]
gi|402479525|gb|AFQ56034.1| 23S rRNA methyltransferase [Bacillus subtilis QB928]
gi|407955787|dbj|BAM49027.1| 23S rRNA methyltransferase [Bacillus subtilis BEST7613]
gi|407963058|dbj|BAM56297.1| 23S rRNA methyltransferase [Bacillus subtilis BEST7003]
gi|452114510|gb|EME04910.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Bacillus subtilis MB73/2]
Length = 249
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + ++++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASARE-DFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|415721306|ref|ZP_11468513.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
00703Bmash]
gi|388061094|gb|EIK83763.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
00703Bmash]
Length = 329
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 91 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 149
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D SA + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 150 DRAEKKARAMEAADSASARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 209
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 210 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 269
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 270 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 301
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 302 ESLNASVAAGISLY 315
>gi|302390940|ref|YP_003826760.1| TrmH family RNA methyltransferase [Acetohalobium arabaticum DSM
5501]
gi|302203017|gb|ADL11695.1| RNA methyltransferase, TrmH family, group 3 [Acetohalobium
arabaticum DSM 5501]
Length = 243
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/223 (28%), Positives = 118/223 (52%), Gaps = 14/223 (6%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G PV+ AL ++ R L Q + +G ++LK A+ GI +K +K
Sbjct: 6 GRNPVMEALKSERRIDEILIYQ-------------NAEGVNELLKKAKAEGIKLKRVAKE 52
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
L+ + + HQG++ P++ + + +L + ++ L++ LDE+ DP N G+I+R+
Sbjct: 53 KLDNLADSYSHQGVIAFGEPIKYLSLDQLIDKAYNKTDDPLFILLDEIKDPHNFGSILRT 112
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A GA GV++ + S L+ V KAS+G++E + + N+++ + EN + + G
Sbjct: 113 ADAVGAQGVIIPKRRSVGLTSAVGKASAGAIEHIPVAQVTNLVRAMEELKENRFWIAGAD 172
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ ++ + G P +V+GSEG G+R LV+ C L+++P
Sbjct: 173 MEAEGFCYQQDLTG-PLGIVIGSEGAGMRRLVKERCDFLIKLP 214
>gi|440683148|ref|YP_007157943.1| RNA methyltransferase, TrmH family, group 3 [Anabaena cylindrica
PCC 7122]
gi|428680267|gb|AFZ59033.1| RNA methyltransferase, TrmH family, group 3 [Anabaena cylindrica
PCC 7122]
Length = 370
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 44/295 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL+AL + R L++ R + D + + +L+ EN G I E
Sbjct: 116 IYGRHPVLSALESH-RNLNRLWI--------TTRLRYDHRFHHLILQAKEN-GTVIDEVE 165
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+ +P +I++L + A + VA D +TDP NLGAII
Sbjct: 166 PKRLDQITDGANHQGIAAQIAPYAYTEIEDLITEAKSVTDAVIVVA-DGITDPHNLGAII 224
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + ++ ++ V K ++G+LE + N+ + L E G+ +
Sbjct: 225 RTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFSVARVVNLSRALEQLKEAGFWIY- 283
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
G+ ++ + PL+ + P +LV+G EG GL L +RSC LV IP G P
Sbjct: 284 GTAATGSEPLHTVNFSGPIVLVIGGEGEGLSMLTQRSCDVLVSIPLQGKTP--------- 334
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTATV 586
SLN SVAAG+ L+ + + N +++ T ++
Sbjct: 335 ---------------------SLNASVAAGMALYEIYRQRSLNTLYLDKLRTVSL 368
>gi|415722868|ref|ZP_11469261.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
00703C2mash]
gi|388064340|gb|EIK86897.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
00703C2mash]
Length = 331
Score = 105 bits (263), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 93 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 151
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D SA + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 152 DRAEKKARAMEAADSASARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 212 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 271
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 272 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 303
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 304 ESLNASVAAGISLY 317
>gi|408789107|ref|ZP_11200815.1| tRNA/rRNA metyltransferase [Rhizobium lupini HPC(L)]
gi|408485021|gb|EKJ93367.1| tRNA/rRNA metyltransferase [Rhizobium lupini HPC(L)]
Length = 295
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYANLRRAVRDAKRERGEIPTPQQSKRR-NRGADDWKP--PQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL+ R+ L S++ N + D + AE ++ S D++ V
Sbjct: 68 RAALANPERQIVKL------SVTQNAFARLD-------IGEAEAQPFPVEIVSPQDIDRV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + ++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETRPLPVKRLGALK-------DSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTMRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ G+ LVLG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIERTFSGEKIALVLGAEGKGLRQKTRETVSALARLDMPGAI 270
>gi|345016046|ref|YP_004818400.1| TrmH family RNA methyltransferase [Streptomyces violaceusniger Tu
4113]
gi|344042395|gb|AEM88120.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
violaceusniger Tu 4113]
Length = 316
Score = 105 bits (263), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 99/327 (30%), Positives = 154/327 (47%), Gaps = 47/327 (14%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEG----LYGVGPV 300
KRR S + K T E ++ + ++ ++AA V + G+G + G V
Sbjct: 24 GKRRRSL--EGKGPTPPAEMRKGHAKQRITNARTRQAAKRPVARRGGKGSSELVVGRNSV 81
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNM 359
AL LYVQ+ + S++R ++ LK+A + G I + E K +L+
Sbjct: 82 FEALREGV-PANTLYVQQ--FIDSDDRVRE-------ALKLAADRGGIHLMEAPKPELDR 131
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+ HQG+VL P E ++L + DE + L VALD VTDP+NLGA++RS F
Sbjct: 132 MTNGLNHQGVVLQVPPYEYAHPEDLSAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAF 191
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
G GVV+ + +A ++ K S+G+ + N+ + L + + G V+G + +
Sbjct: 192 GGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRTLEAYQKAGLTVVGLAADGE 251
Query: 480 AVPLNEIPP-GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
V L ++ P ++V+GSEG GL LV +C VRIP +P
Sbjct: 252 -VELQDVEALDGPLVIVVGSEGKGLSRLVGETCDLRVRIP--MP---------------- 292
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLH 565
G A ESLN VAAGV+L+
Sbjct: 293 -GGA---------ESLNAGVAAGVVLY 309
>gi|217967856|ref|YP_002353362.1| TrmH family RNA methyltransferase [Dictyoglomus turgidum DSM 6724]
gi|217336955|gb|ACK42748.1| RNA methyltransferase, TrmH family, group 3 [Dictyoglomus turgidum
DSM 6724]
Length = 239
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/275 (30%), Positives = 133/275 (48%), Gaps = 45/275 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG VL AL ++ +Y+ G+ D K + ++LK+A+ I IK
Sbjct: 5 IYGKNSVLEALKSEI-PLNKIYIARGIHF--------DNK-FNEILKLAKEKSIPIKYVE 54
Query: 354 KHDL-NMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ + MV GN QG++ + L V K+ + D S+ V LD + DP NLGAI
Sbjct: 55 RSFIEKMVDGN--SQGVL---AILSSVPYKDWKELEKSLDNKSIIVVLDHIQDPYNLGAI 109
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
R++ F G S +V+ SA ++ V K S+G+L + + +N+ FL GW ++
Sbjct: 110 ARTSEFAGVSAIVIPKARSAGITSVSFKTSAGALSYIPVIRVSNIANFLRELKGKGWFIV 169
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G ++++ + N++ P LV+GSEG GL +V SC LV+IP
Sbjct: 170 GADLNTENL-YNKVEYNFPLALVVGSEGEGLHRIVRESCDLLVKIP-------------- 214
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
S+ VESLNVSVA G++L+ +
Sbjct: 215 --------------SYGKVESLNVSVAVGIILYKI 235
>gi|302520120|ref|ZP_07272462.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
gi|302429015|gb|EFL00831.1| tRNA/rRNA methyltransferase [Streptomyces sp. SPB78]
Length = 314
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 139/300 (46%), Gaps = 40/300 (13%)
Query: 268 NRQENS-GRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNN 326
NR N+ + T + A + K E + G PV AL ALYVQ+ N+
Sbjct: 44 NRLANAKAKQTQRRTAAKSRGKSSSELVVGRNPVFEALRDGV-PATALYVQQ---FIDND 99
Query: 327 RKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+ +D LK+A + G I + E + +L+ + HQGLVL P E ++L
Sbjct: 100 ERVRD------ALKLAADRGGIHLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLP 153
Query: 386 PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS 445
+ DE L VALD VTDP+NLGAI+RS FG GVV+ + +A ++ K+S+G+
Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+ + L + + G V+G + + P ++V+GSEG GL
Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHAVGELAALDGPVVIVIGSEGKGLSR 273
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV +C + V IP +P G A ESLN VAAG++++
Sbjct: 274 LVGETCDYRVSIP--MP-----------------GGA---------ESLNAGVAAGIVMY 305
>gi|428277511|ref|YP_005559246.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
BEST195]
gi|430755602|ref|YP_007211163.1| Putative TrmH family tRNA/rRNA methyltransferase YacO [Bacillus
subtilis subsp. subtilis str. BSP1]
gi|291482468|dbj|BAI83543.1| hypothetical protein BSNT_00195 [Bacillus subtilis subsp. natto
BEST195]
gi|430020122|gb|AGA20728.1| Putative TrmH family tRNA/rRNA methyltransferase YacO [Bacillus
subtilis subsp. subtilis str. BSP1]
Length = 249
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + ++++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ N + P LV+GSEG G+ LV+ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASAREDYRN-MDGNMPLALVIGSEGKGMGRLVKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|379734104|ref|YP_005327609.1| tRNA/rRNA methyltransferase [Blastococcus saxobsidens DD2]
gi|378781910|emb|CCG01564.1| Uncharacterized tRNA/rRNA methyltransferase Mkms_4822 [Blastococcus
saxobsidens DD2]
Length = 328
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 131/280 (46%), Gaps = 43/280 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PV+ AL A+ ALYV G + + D++ + L +A + G+ + E
Sbjct: 74 ELLLGRNPVVEALRARI-PATALYVVTG-----DTHRATDER-IAEALALAADRGLPLLE 126
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K + + + HQG+ L P + +L I+ D + L VALD VTDP+NLGA
Sbjct: 127 VGKAEFDRMSQGALHQGIGLQVPPYDYAHPDDLVDIARDSGRPPLIVALDGVTDPRNLGA 186
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RSA F A GVV+ + + ++ + S+G+ + + N+ + L S + G
Sbjct: 187 VVRSAAAFDAHGVVVPQRRAVGMTASAWRTSAGAAARIPVARAVNLARALGSYQDAGLMT 246
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G G V A + P LV+G+EGTGL LV C +VRIP
Sbjct: 247 VGLAGDGDVDLHA--FDGF--ADPVALVVGAEGTGLSRLVRERCDVVVRIP--------- 293
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+D D ESLNVSVAAG+ L+ +
Sbjct: 294 -----IDRD--------------TESLNVSVAAGIALYQI 314
>gi|15843192|ref|NP_338229.1| spoU rRNA methylase [Mycobacterium tuberculosis CDC1551]
gi|308232506|ref|ZP_07416270.2| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
gi|13883545|gb|AAK48043.1| spoU rRNA methylase family protein [Mycobacterium tuberculosis
CDC1551]
gi|308213805|gb|EFO73204.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis SUMu001]
Length = 253
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 87/274 (31%), Positives = 132/274 (48%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 1 MLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVELL 50
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGAI+
Sbjct: 51 RADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGAIV 109
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV+G
Sbjct: 110 RSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRVIG 169
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 170 LD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP--------------- 213
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 214 -------MAAQ------AESLNASVAAGVVLAEI 234
>gi|262377008|ref|ZP_06070234.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
lwoffii SH145]
gi|262308046|gb|EEY89183.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Acinetobacter
lwoffii SH145]
Length = 249
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 81/269 (30%), Positives = 127/269 (47%), Gaps = 38/269 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK FY ++ E L L+ K +D + ++VL++AE GIS+++ S+ L
Sbjct: 2 AKPEYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V + K+L+ + + QA L +ALD +TDP NLGA IR+A
Sbjct: 62 KLAGQPFHQGVVAAVRAHPTLNEKDLESLLSANPQA-LLLALDHITDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN-GWRVLGGSVS 477
G V+ SA L+ K ++G + ++ N+ + L E+ RV+G +
Sbjct: 121 MGVEAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+P+ G +V+G+E TGLRP+ + C V IP AG +
Sbjct: 181 EKALPIQNFDFTGTGVCIVMGAEDTGLRPITQSQCDQTVYIP-------MAGNL------ 227
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 228 ---------------QSLNVSVATGMALY 241
>gi|289770189|ref|ZP_06529567.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
gi|289700388|gb|EFD67817.1| tRNA/rRNA methyltransferase [Streptomyces lividans TK24]
Length = 314
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 36/252 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 92 LYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 143
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + DE L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 144 PPYEYAHPEDLVAAAHDEGTDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 203
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K S+G+ + N+ + L + G V+G + +A + P +
Sbjct: 204 MTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVV 263
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG GL LV +C VRIP +P G A ES
Sbjct: 264 IVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------ES 295
Query: 554 LNVSVAAGVLLH 565
LN VAAG++L+
Sbjct: 296 LNAGVAAGIVLY 307
>gi|304405638|ref|ZP_07387297.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
curdlanolyticus YK9]
gi|304345677|gb|EFM11512.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus
curdlanolyticus YK9]
Length = 281
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 83/309 (26%), Positives = 143/309 (46%), Gaps = 42/309 (13%)
Query: 262 PEYQRWNRQENSG--RTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEG 319
P Q R+ +SG RTT + A GE + G PVL AL + RE +++ EG
Sbjct: 7 PYRQERQRERSSGGYRTTEQVQAEQATADNDGEIIAGKHPVLEALRS-GREINKVWIAEG 65
Query: 320 LSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMV 379
K ++ A+ GI ++ K L+ + G HQG++ A+
Sbjct: 66 ----------SQKHLTAPIVAEAKQHGIIVQFADKRKLDSMAGEVAHQGVIAQAAAYRYY 115
Query: 380 KIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS 439
+++E+ + + + + LDE+ DP NLG+I+R+A G GV++ + S L+ VS
Sbjct: 116 EVEEILAAAKAKGETPFLLLLDEIEDPHNLGSILRTAECTGVHGVIIPKRRSVGLTATVS 175
Query: 440 KASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSE 499
K S+G+ E + + N+ Q + + E G + G V+++ + P LV+G+E
Sbjct: 176 KISAGAAEYVPVARVTNLAQTIETLKEQGVWIAGADVAAEQ-DVYRTKFDMPLGLVIGNE 234
Query: 500 GTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
G+ L+ C L+++P AG+++ SLN SVA
Sbjct: 235 SKGMGRLIREKCDFLIKLP-------MAGQLN---------------------SLNASVA 266
Query: 560 AGVLLHHLV 568
AGVL++ ++
Sbjct: 267 AGVLMYEVL 275
>gi|295688896|ref|YP_003592589.1| TrmH family RNA methyltransferase [Caulobacter segnis ATCC 21756]
gi|295430799|gb|ADG09971.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter segnis
ATCC 21756]
Length = 276
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/199 (36%), Positives = 111/199 (55%), Gaps = 17/199 (8%)
Query: 322 LSSNNRKKKDKKGYEKV--LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMV 379
L++ +R K+ +K+ L++ E +E +KH V HQGL L E +
Sbjct: 63 LATPDRAKRLAPALQKLSCLQVMEG-----QEIAKHLPQGAV----HQGLALKIDEPESL 113
Query: 380 KIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS 439
I EL +A D V LD++TDPQN+GAI RSA FGA GV+L +++ LSGV++
Sbjct: 114 SIAEL---AASND--GFLVMLDQITDPQNIGAIFRSAAAFGAKGVILQDRHAPVLSGVLA 168
Query: 440 KASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSE 499
K + G+++ + N+ + L A+ GWR + + ++ L+E+ G PT+LVLGSE
Sbjct: 169 KTAVGAVDKVPYARVVNLSRALEELADLGWRAVALAGEAEQT-LDEVLDGAPTVLVLGSE 227
Query: 500 GTGLRPLVERSCTHLVRIP 518
G G+R LV C L +IP
Sbjct: 228 GEGVRRLVAEHCDVLGKIP 246
>gi|424890796|ref|ZP_18314395.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393173014|gb|EJC73059.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 296
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 135/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPQKRRR--GAEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D AE +GI + S D++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEVD----------AETLGIPFEIVSPQDIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G
Sbjct: 172 NCGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGP 231
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
A L G+ LVLGSEG GLR + L R+ PG I
Sbjct: 232 AA-LEGTFSGKKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|329936175|ref|ZP_08285968.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
gi|329304285|gb|EGG48165.1| RNA methyltransferase [Streptomyces griseoaurantiacus M045]
Length = 313
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 95/326 (29%), Positives = 149/326 (45%), Gaps = 44/326 (13%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVG-----EGLYGVGP 299
+RR S + K T E ++ +++ + K+A P+ G E + G P
Sbjct: 20 GQRRKSL--EGKGPTPPAEMRKGHKKNRLATSRAKQATRRPAPRGRGGRSTSELVVGRNP 77
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
V+ AL LYVQ+ + D++ E + AE GI++ E + +L+
Sbjct: 78 VVEALREGV-PANTLYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDR 128
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+ HQGLVL P E ++L + D + L VALD VTDP+NLGA++RS F
Sbjct: 129 MTNGLNHQGLVLQVPPYEYAHPEDLVSAAHDAGEDPLIVALDGVTDPRNLGAVVRSVSAF 188
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
G GVV+ + +A ++ K S+G+ + N+ + L + + G V+G + +
Sbjct: 189 GGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRALEAYKKAGITVVGLAADGE 248
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNH 539
A + P ++V+GSEG GL LV +C VRIP +P
Sbjct: 249 AAVGDLKALDGPVVIVVGSEGKGLSRLVGETCDVRVRIP--MP----------------- 289
Query: 540 GSAEQFQSFMAVESLNVSVAAGVLLH 565
G A ESLN VAAG++L+
Sbjct: 290 GGA---------ESLNAGVAAGIVLY 306
>gi|167036782|ref|YP_001664360.1| RNA methyltransferase [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|320115204|ref|YP_004185363.1| TrmH family RNA methyltransferase [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855616|gb|ABY94024.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928295|gb|ADV78980.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
brockii subsp. finnii Ako-1]
Length = 247
Score = 105 bits (262), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 133/275 (48%), Gaps = 41/275 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G PV+ A+ + +E +YV K K++ A+ GI + T
Sbjct: 7 IFGRNPVIEAIKS-GKEIEKIYVS-----------KTAGGNISKIINFAKEAGIVVSTTD 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + G++ HQG+V ++ + ++ +L + + + + LDE+TDP NLGAII
Sbjct: 55 NDTLSKLAGSQNHQGVVALSAVYKYFEVDDLLEYAEQKKEKPFLLILDEITDPHNLGAII 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG G+++ + + ++ V K S+G++E M + +N+ + E G ++G
Sbjct: 115 RSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSNINNTIRDLKERGLWIVG 174
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V+++ E+ P V+G+EG G+ LV ++C +V+IP G+I+
Sbjct: 175 TDVNAEK-SFEELNYDFPVAFVIGNEGKGVSKLVLQNCDFVVKIP-------MKGKIN-- 224
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA +L++ +V
Sbjct: 225 -------------------SLNASVAASILIYQVV 240
>gi|411006349|ref|ZP_11382678.1| tRNA/rRNA methyltransferase [Streptomyces globisporus C-1027]
Length = 318
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 126/259 (48%), Gaps = 46/259 (17%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLD 372
LYVQ+ + N+ + +D VLK+A + G I++ E + +L+ + HQGLVL
Sbjct: 96 LYVQQYID---NDERVRD------VLKLAGDRGTINLMEAPRPELDRMTNGLNHQGLVLQ 146
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E ++L +AD + L VALD VTDP+NLGAI+RS FG GVV+ + +A
Sbjct: 147 VPPYEYAHPEDLLAAAADNHEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAA 206
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV--PLNEIPPGQ 490
++ K+S+G+ + N+ + L + G V+G + + L E+
Sbjct: 207 GMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEELD--G 264
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P ++V+GSEG GL LV +C + VRI PG
Sbjct: 265 PVVIVIGSEGKGLGRLVGETCDYRVRISMPG----------------------------- 295
Query: 549 MAVESLNVSVAAGVLLHHL 567
ESLN VAAG++L+ +
Sbjct: 296 -GAESLNAGVAAGIVLYEV 313
>gi|424910738|ref|ZP_18334115.1| rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
gi|392846769|gb|EJA99291.1| rRNA methylase [Rhizobium leguminosarum bv. viciae USDA 2370]
Length = 295
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 136/284 (47%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYANLRRAVRDAKRERGEIPTPQQPKRR-NRGADDWKP--PQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL+ R+ L S++ N + D + AE ++ S D++ V
Sbjct: 68 RAALANPERQIVKL------SVTQNAFARLD-------IGEAEAQPFPVEIVSPQDIDRV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + ++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETRPLPVKRLGALK-------DSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTMRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ G+ LVLG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIERTFSGEKIALVLGAEGKGLRQKTRETVSALARLDMPGAI 270
>gi|453052746|gb|EMF00223.1| TrmH family RNA methyltransferase [Streptomyces mobaraensis NBRC
13819 = DSM 40847]
Length = 316
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 79/253 (31%), Positives = 127/253 (50%), Gaps = 39/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ L N+ + ++ L++A + G+++ E + +L+ + HQGLVL
Sbjct: 95 LYVQQYLD---NDERVRE------ALQLATDKGLNLMEAPRPELDRMTNGLNHQGLVLSV 145
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P + ++L + + + L VALD +TDP+NLGA++RS FG GVV+ + +A
Sbjct: 146 PPYDYAHPEDLTAAARADGEDPLIVALDGITDPRNLGAVVRSVSAFGGHGVVVPERRAAG 205
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PT 492
++ K S+G+ + NM + L + + G V+G + V L+E+ + P
Sbjct: 206 MTASAWKTSAGTAARTPVARATNMTRMLEAYQKEGLMVVGLAADGD-VELHELDALEGPV 264
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C VRIP +P G A E
Sbjct: 265 VIVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------E 296
Query: 553 SLNVSVAAGVLLH 565
SLN VAAGV+L+
Sbjct: 297 SLNAGVAAGVVLY 309
>gi|343511596|ref|ZP_08748755.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio scophthalmi
LMG 19158]
gi|343515874|ref|ZP_08752922.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sp. N418]
gi|342797509|gb|EGU33157.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio sp. N418]
gi|342797798|gb|EGU33437.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio scophthalmi
LMG 19158]
Length = 245
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 130/281 (46%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E LYG+ V A L + F YV +G ++D + +L + G+S
Sbjct: 1 MSNEFLYGIHAVKAVLEREPERFIEAYVLKG---------RQDDR-LMPILNELQRCGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ + L+ HQG++ P + + +LD I D+ +A L + LD VTDP N
Sbjct: 51 IQQMGRKTLDDKAQGANHQGVIARVKPAKQLNENDLDDI-IDQHEAPLLLVLDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + +++ SAP++ VSK + G+ E++ L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAIIVPKDRSAPMTATVSKVACGAAEIVPLIRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G V SLNVSVA+G+ L V
Sbjct: 221 G---------------------TVSSLNVSVASGICLFEAV 240
>gi|72160617|ref|YP_288274.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
gi|71914349|gb|AAZ54251.1| RNA methyltransferase TrmH, group 3 [Thermobifida fusca YX]
Length = 324
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 91/283 (32%), Positives = 133/283 (46%), Gaps = 46/283 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PV+ AL AK + L +N D++ E ++A GI+I E
Sbjct: 75 ELLIGRNPVVEALRAKV---------PAVRLLLSNSLDPDERITEAA-RLAGQQGIAIAE 124
Query: 352 TSKHDLN-----MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDP 406
++ +L+ + + HQGL+L P E +L + + L VALD VTDP
Sbjct: 125 VARPELDRRCERLGLPKAAHQGLILQVEPYEYATADDLLAEARKGETTPLIVALDGVTDP 184
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
NLGAI RSA FGA G+++ + +A ++ KAS+G+L + + N+ + L E
Sbjct: 185 HNLGAIARSAAAFGAHGLLVPERRAAGVTTAAWKASAGTLARIPVAQVVNLTRTLKQFQE 244
Query: 467 NGWRVLGGSVSSKAVPLNEIPPG-QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
G+ V G PL++ +P+++V+GSEG GL LV +C +V IP
Sbjct: 245 AGFFVSGLDADGD-TPLDQWELATEPSVVVVGSEGKGLSRLVRETCDVVVSIP------- 296
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
HG VESLN SVAAGV L+ V
Sbjct: 297 ------------IHG----------VESLNASVAAGVALYEAV 317
>gi|333026132|ref|ZP_08454196.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
gi|332745984|gb|EGJ76425.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. Tu6071]
Length = 307
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 139/300 (46%), Gaps = 40/300 (13%)
Query: 268 NRQENS-GRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNN 326
NR N+ + T + A + K E + G PV AL ALYVQ+ N+
Sbjct: 37 NRLANAKAKQTQRRTAAKSRGKSSSELVVGRNPVFEALRDGV-PATALYVQQ---FIDND 92
Query: 327 RKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+ +D LK+A + G I + E + +L+ + HQGLVL P E ++L
Sbjct: 93 ERVRD------ALKLAADRGGIHLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLP 146
Query: 386 PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS 445
+ DE L VALD VTDP+NLGAI+RS FG GVV+ + +A ++ K+S+G+
Sbjct: 147 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 206
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+ + L + + G V+G + + P ++V+GSEG GL
Sbjct: 207 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSR 266
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV +C + V IP +P G A ESLN VAAG++++
Sbjct: 267 LVGETCDYRVSIP--MP-----------------GGA---------ESLNAGVAAGIVMY 298
>gi|339006564|ref|ZP_08639139.1| putative TrmH family tRNA/rRNA methyltransferase YacO
[Brevibacillus laterosporus LMG 15441]
gi|421875253|ref|ZP_16306847.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Brevibacillus laterosporus GI-9]
gi|338775773|gb|EGP35301.1| putative TrmH family tRNA/rRNA methyltransferase YacO
[Brevibacillus laterosporus LMG 15441]
gi|372455721|emb|CCF16396.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Brevibacillus laterosporus GI-9]
Length = 251
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 137/276 (49%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL + R +++ EG K++ G + +A+ +G+ I
Sbjct: 4 EWILGKNPVIEALRSG-RTINKIWMAEG--------ANKNQMG--PIFTLAKELGVVITT 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ L+ +V + HQG++ + + V+I ++ + + ++ + LDE+ DP NLG+
Sbjct: 53 ANRKKLDQLVNSDNHQGVIASVAAYDYVEIDDILAKAEERNEVPFVIILDELEDPHNLGS 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+R+A GA GV++ + S L+ V+KAS+G++E + + N+++ + E G+ +
Sbjct: 113 ILRTADAVGAHGVIIPKRRSVSLTATVAKASAGAIEYVPVARVTNIVRAMEELKEKGFWI 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
GG+ ++ E P LV+GSEG G+ LV +C L R+P AG+
Sbjct: 173 -GGTDAAGKQDFREGDYTMPFALVIGSEGKGMSRLVRENCDFLYRLP-------MAGQ-- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V SLN SVAA +L++ +
Sbjct: 223 -------------------VTSLNASVAAAILMYEV 239
>gi|321313767|ref|YP_004206054.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
gi|384173757|ref|YP_005555142.1| RNA methyltransferase, TrmH family, group 3 [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
gi|320020041|gb|ADV95027.1| 23S rRNA methyltransferase [Bacillus subtilis BSn5]
gi|349592981|gb|AEP89168.1| RNA methyltransferase, TrmH family, group 3 [Bacillus subtilis
subsp. subtilis str. RO-NN-1]
Length = 249
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + ++++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ N + P LV+GSEG G+ LV+ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASAREDYRN-MDGNMPLALVIGSEGKGMGRLVKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|15889284|ref|NP_354965.1| tRNA/rRNA metyltransferase [Agrobacterium fabrum str. C58]
gi|15157117|gb|AAK87750.1| tRNA/rRNA metyltransferase [Agrobacterium fabrum str. C58]
Length = 295
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYATLRRAVRDAKRERGEIPTPQQPKRR-NRGADDWKP--PQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AALS R+ L S++ N + D + A+ ++ S +++ V
Sbjct: 68 RAALSNPQRQLIKL------SVTLNAFARLD-------IGEADAQPFPVEIVSPQEIDKV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL +K+LD + ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETRPL---PVKKLDALK----KSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTIRHSPTESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ + G LVLG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIEQTFTGAKIALVLGAEGKGLRQKTRETVSALARLDMPGEI 270
>gi|289428953|ref|ZP_06430633.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
gi|289157954|gb|EFD06177.1| RNA methyltransferase, TrmH family [Propionibacterium acnes J165]
Length = 208
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 73/223 (32%), Positives = 111/223 (49%), Gaps = 32/223 (14%)
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
GI++ + ++ +L+ + G HQG+ L E + +L + L VALD+VTD
Sbjct: 7 GIALMQATRGELDRMTGGSNHQGVALRLPEYEYATVGDLIAAGTQTYRGGLVVALDKVTD 66
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+NLGAIIRSA FGA GV++ ++ SA ++ K S+G+ + + N+ Q L A
Sbjct: 67 PRNLGAIIRSAAAFGAQGVLIPSRRSASMTAAAWKTSAGAAARIPVAMATNLNQALGKFA 126
Query: 466 ENGWRVLGGSVSSKAVPLNEIPPG--QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
GW ++G ++ +A PG P ++V+GSEG GL L +SC L IP
Sbjct: 127 AAGWMIVG--LAGEADSDFASAPGFDGPLVIVVGSEGDGLARLTRQSCDVLASIP----- 179
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
+ +D VESLN SVAA + L+
Sbjct: 180 ---------ISSD--------------VESLNASVAASIALYE 199
>gi|218682806|ref|ZP_03530407.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium etli CIAT
894]
Length = 296
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 136/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPPPQKRRR--GGDDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D AE +GI + S +++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEID----------AETLGIPFEIVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G+ LVLGSEG GLR + L R+ PG I
Sbjct: 231 PAPLEGTFSGEKLALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|163868081|ref|YP_001609285.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
gi|161017732|emb|CAK01290.1| tRNA/rRNA metyltransferase [Bartonella tribocorum CIP 105476]
Length = 276
Score = 105 bits (262), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 115/232 (49%), Gaps = 27/232 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
LYG+ V AAL R F LYV + N K+ L M+E + +
Sbjct: 46 LYGIHSVQAALKNPKRIFKCLYVTQ------NALKR---------LNMSESDYPCPVTLC 90
Query: 353 SKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ +VG+ HQG+VL+ SPL+ K+ EL L + +D++TDP N+GA
Sbjct: 91 TPKYLDSLVGSEAVHQGIVLETSPLKPCKLSELT-------NTDLVIVMDQITDPHNVGA 143
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA F A ++ ++S SGV++KA+SG+LE++ N+ + L + G+
Sbjct: 144 IMRSAVAFKAKALITTCRHSPHESGVLAKAASGALEMIHYITVRNLAETLQEIHQTGFTS 203
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G S PL G LVLG+EG GLR + L R+ PGNI
Sbjct: 204 FGLD-SEGDQPLETTLTGSKIALVLGAEGKGLRKKTRETVCALARLDMPGNI 254
>gi|409436791|ref|ZP_11263961.1| putative tRNA/rRNA methyltransferase protein [Rhizobium
mesoamericanum STM3625]
gi|408751715|emb|CCM75115.1| putative tRNA/rRNA methyltransferase protein [Rhizobium
mesoamericanum STM3625]
Length = 296
Score = 105 bits (262), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 138/288 (47%), Gaps = 31/288 (10%)
Query: 237 EAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYG 296
++ D+ + R + R + R E P R+ G WK P+ P+ V LYG
Sbjct: 15 KSAKDTHYATLRRAHRDSKRERGEIPTPPLKKRRR--GAEDWK--PPTLAPEQVY--LYG 68
Query: 297 VGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHD 356
+ V AAL K R N R + ++ A+ +GI ++ + H+
Sbjct: 69 LHTVRAALDNKERR--------------NVRLSATQNALARLEVDADALGIPVEIVAPHE 114
Query: 357 LNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
++ V+G + HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RS
Sbjct: 115 IDRVLGPDAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRS 167
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A F A V+ ++S SGV++K++SG+LEL+ N+ + + G+ +G
Sbjct: 168 AVAFNAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADAIGELHKLGFFTIGLD 227
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S PL G LVLGSEG GLR + + L R+ PG I
Sbjct: 228 -SEGPAPLEGTISGDKVALVLGSEGKGLRQKTRETVSALARLDMPGAI 274
>gi|335038067|ref|ZP_08531362.1| tRNA/rRNA metyltransferase [Agrobacterium sp. ATCC 31749]
gi|333790505|gb|EGL61907.1| tRNA/rRNA metyltransferase [Agrobacterium sp. ATCC 31749]
Length = 295
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 139/284 (48%), Gaps = 29/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q+ R+ N G WK P P V LYG+ V
Sbjct: 13 DTHYATLRRAVRDAKRERGEIPTPQQPKRR-NRGADDWK--PPQLAPDQVH--LYGLHTV 67
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AALS R+ L S++ N + D + A+ ++ S +++ V
Sbjct: 68 RAALSNPERQLIKL------SVTLNAFARLD-------IGEADAQPFPVEIVSPQEIDKV 114
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL +K+LD + ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 115 LGPEAIHQGVMLETRPL---PVKKLDALK----KSPLILVLDQVTDPHNVGAIMRSAVAF 167
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 168 NAGAVITTIRHSPTESGVLAKSASGALELIPYIQITNLADTLGELHKLGFFSVGLD-SEG 226
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ + G LVLG+EG GLR + + L R+ PG I
Sbjct: 227 PAPIEQTFTGAKIALVLGAEGKGLRQKTRETVSALARLDMPGEI 270
>gi|407978595|ref|ZP_11159424.1| tRNA/rRNA methyltransferase [Bacillus sp. HYC-10]
gi|407414791|gb|EKF36417.1| tRNA/rRNA methyltransferase [Bacillus sp. HYC-10]
Length = 249
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 129/259 (49%), Gaps = 40/259 (15%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
RE Y L++ E N K + ++V+++A+ I+I+ + L+ +V + HQG
Sbjct: 22 RELYKLWMAE------NTVKGQA----QQVIELAKKQNITIQYVPRKKLDQMVSGQ-HQG 70
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+V + E ++ EL I+ ++ ++ LDE+ DP NLG+I+R+A GA G+V+
Sbjct: 71 IVAQVAAYEYAELDELYQIAEQRNEQPFFIILDEIEDPHNLGSIMRTADAVGAHGIVIPK 130
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ + L+ V+KAS+G++E + + N+ + L E G V G S+K +
Sbjct: 131 RRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDASAKQ-DYRQFDG 189
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P LV+GSEG G+ L++ C L+++P AG+
Sbjct: 190 TMPLALVIGSEGKGIGRLIKEKCDFLIKLP-------MAGK------------------- 223
Query: 549 MAVESLNVSVAAGVLLHHL 567
V SLN SVAA +L++ +
Sbjct: 224 --VTSLNASVAASLLMYEV 240
>gi|418034774|ref|ZP_12673243.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|449092809|ref|YP_007425300.1| 23S rRNA methyltransferase [Bacillus subtilis XF-1]
gi|351468428|gb|EHA28648.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. subtilis str.
SC-8]
gi|449026724|gb|AGE61963.1| 23S rRNA methyltransferase [Bacillus subtilis XF-1]
Length = 236
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + ++++
Sbjct: 26 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQ 83
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 84 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARV 143
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ N + P LV+GSEG G+ LV+ C L
Sbjct: 144 TNLARTLEEMKERGIWVVGTDASAREDYRN-MDGNMPLALVIGSEGKGMGRLVKEKCDFL 202
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 203 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 227
>gi|238061385|ref|ZP_04606094.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
gi|237883196|gb|EEP72024.1| RNA methyltransferase trmH [Micromonospora sp. ATCC 39149]
Length = 376
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 126/276 (45%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PVL +L A+ ALY G+ + ++++ A + GI+I E
Sbjct: 132 ELLVGRNPVLESLRAQV-PATALYTAHGIEIDDR---------VNEIVRTAADRGIAILE 181
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+ +L+ + G HQG+ L P ++L +A E A L VALD VTDP+NLGA
Sbjct: 182 ISRAELDRMTGGVLHQGIGLQVPPFAYEPFEDLV-AAALEQTAPLLVALDGVTDPRNLGA 240
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRSA FGA GV + + +A ++ + S+G+ + + N+ + L + + G+ V
Sbjct: 241 VIRSAAAFGAQGVFVPERRAAGITATAWRTSAGAAARVPVAQVTNLTRSLKACQDAGFMV 300
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + P ++V+GSEG GL LV +C V IP
Sbjct: 301 VGLDADGDTDLYDLEAAVGPLVVVVGSEGRGLSRLVGETCDLTVSIP------------- 347
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAA V L +
Sbjct: 348 ---------------MVSEVESLNASVAAAVTLAEV 368
>gi|296333093|ref|ZP_06875547.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305672795|ref|YP_003864466.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|350264196|ref|YP_004875503.1| TrmH family RNA methyltransferase [Bacillus subtilis subsp.
spizizenii TU-B-10]
gi|386756677|ref|YP_006229893.1| RlmB [Bacillus sp. JS]
gi|398303908|ref|ZP_10507494.1| RlmB [Bacillus vallismortis DV1-F-3]
gi|296149709|gb|EFG90604.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
ATCC 6633]
gi|305411038|gb|ADM36156.1| 23S rRNA methyltransferase [Bacillus subtilis subsp. spizizenii
str. W23]
gi|349597083|gb|AEP84871.1| RNA methyltransferase, TrmH family, group 3 [Bacillus subtilis
subsp. spizizenii TU-B-10]
gi|384929959|gb|AFI26637.1| RlmB [Bacillus sp. JS]
Length = 249
Score = 105 bits (261), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + + ++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEERNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ N + P LV+GSEG G+ LV+ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASAREDYRN-MDGNMPLALVIGSEGKGMGRLVKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|258620525|ref|ZP_05715563.1| RNA methyltransferase [Vibrio mimicus VM573]
gi|258625738|ref|ZP_05720617.1| RNA methyltransferase [Vibrio mimicus VM603]
gi|261211153|ref|ZP_05925442.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC341]
gi|262166619|ref|ZP_06034356.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
VM223]
gi|262170465|ref|ZP_06038143.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
MB-451]
gi|262401885|ref|ZP_06078450.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC586]
gi|424809387|ref|ZP_18234768.1| RNA methyltransferase, TrmH family [Vibrio mimicus SX-4]
gi|449144164|ref|ZP_21774980.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio mimicus
CAIM 602]
gi|258581976|gb|EEW06846.1| RNA methyltransferase [Vibrio mimicus VM603]
gi|258587404|gb|EEW12115.1| RNA methyltransferase [Vibrio mimicus VM573]
gi|260839654|gb|EEX66265.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC341]
gi|261891541|gb|EEY37527.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
MB-451]
gi|262026335|gb|EEY45003.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio mimicus
VM223]
gi|262351857|gb|EEZ00988.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio sp.
RC586]
gi|342323321|gb|EGU19106.1| RNA methyltransferase, TrmH family [Vibrio mimicus SX-4]
gi|449080100|gb|EMB51018.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio mimicus
CAIM 602]
Length = 246
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 131/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAP++ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA G+ L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGICLFEAVRQRMAN 246
>gi|325972623|ref|YP_004248814.1| TrmH family RNA methyltransferase [Sphaerochaeta globus str. Buddy]
gi|324027861|gb|ADY14620.1| RNA methyltransferase, TrmH family, group 3 [Sphaerochaeta globus
str. Buddy]
Length = 251
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 39/229 (17%)
Query: 347 ISIKETSKHDLNMVVGNRPHQGLVLD--------ASPLEMVKIKELDPISADEDQASLWV 398
+ +K+ +K +++ +V H+G VLD + + + +KE D+D A L +
Sbjct: 47 VLVKKIAKVEMDRMVDQADHRGAVLDLMVPGKGSGARIPAMSVKEYCATLKDDDSA-LVL 105
Query: 399 ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMM 458
LDE+TDPQNLGAI+RSA F S V++ + SA + V K SSG+ + + L NM
Sbjct: 106 VLDEITDPQNLGAILRSADQFSVSLVIIPERRSAQANTTVVKVSSGAAQYVPLATVTNMN 165
Query: 459 QFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ + G+ V G S+S +AV P + T+LV+G+EG G+ L ++ C H+V IP
Sbjct: 166 REIEYLKSQGFWVYGASMSGQAVYKTVFP--KRTVLVMGNEGKGIGQLTQKLCDHMVTIP 223
Query: 519 GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+G ID SLNVSVA G+LL+ +
Sbjct: 224 -------MSGHID---------------------SLNVSVATGILLYEV 244
>gi|403669824|ref|ZP_10935000.1| trmH family tRNA/rRNA methyltransferase yacO [Kurthia sp. JC8E]
Length = 324
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 78/289 (26%), Positives = 144/289 (49%), Gaps = 30/289 (10%)
Query: 243 KWNKRRNSFRRDVKAR----TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEG----- 293
KWN++ + R+ + R KPE ++W+ QE R +E + V VGE
Sbjct: 25 KWNEQSSEGGRNQEGRKFDGNRKPEGRKWD-QERPQRKERQETVANDV--TVGEEEIDHS 81
Query: 294 ---LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
+ G PVL AL + TR+ +++ EG+ K G +++L MA+ I ++
Sbjct: 82 KEMIAGKNPVLEALRS-TRDINKIWIAEGVK----------KNGIKELLDMAKERQIVVQ 130
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K ++ + + HQG+V + ++ ++ ++ + + + LDE+ DP NLG
Sbjct: 131 FVPKQKIDNL-SSENHQGVVASVAAYNYAELDDVFKLAEERGEDPFIMILDELEDPHNLG 189
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-W 469
+I+R+A GA G+++ + S L+ VV+KAS+G++E + NN+ Q + E G W
Sbjct: 190 SIMRTADAVGAHGIIIPRRRSVSLTAVVAKASTGAIEYIPTVRVNNLSQTVDELKERGVW 249
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G+ + + + P +++GSEG G+ L++ C L +P
Sbjct: 250 --IAGTDAKGSQDYRRMDATLPLAVIIGSEGRGMGRLLKEKCDFLYNLP 296
>gi|315649722|ref|ZP_07902806.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
V453]
gi|315274910|gb|EFU38286.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus vortex
V453]
Length = 250
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 71/232 (30%), Positives = 123/232 (53%), Gaps = 30/232 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ A+ +GI I+ K L+ +V HQG+V A+P V++++L ++ ++ +
Sbjct: 41 IIAEAKKLGIVIQHVDKRKLDQMVPGVQHQGVVAQAAPYAYVEVEDLLKVAEEKGEPPFL 100
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ LDE+ DP NLG+I+R+A GA GVVL + SA ++ VSK S+G++E + + N+
Sbjct: 101 LLLDEIEDPHNLGSILRTADCTGAHGVVLPKRRSAQVTATVSKTSAGAVEYVPVARVTNL 160
Query: 458 MQFLVSSAENGWRVLGGSVSS-KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
Q + E G V+G V + + + E+ G P +V+G+E G+ L+ C LV+
Sbjct: 161 GQTIDQLKEMGVWVVGTVVDAVQELYDTEVFDG-PVAIVIGNESKGMGRLIREKCDVLVK 219
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+P AG+I+ SLN SVAAGV+++ ++
Sbjct: 220 LP-------MAGKIN---------------------SLNASVAAGVVMYEVL 243
>gi|254227152|ref|ZP_04920689.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
gi|125620326|gb|EAZ48723.1| RNA methyltransferase, TrmH family [Vibrio cholerae V51]
Length = 247
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 130/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A + L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEHPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA G+ L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGICLFEAVRQRMAN 246
>gi|88858913|ref|ZP_01133554.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
D2]
gi|88819139|gb|EAR28953.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas tunicata
D2]
Length = 248
Score = 105 bits (261), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 127/280 (45%), Gaps = 40/280 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E ++G V A L+ + F +Y +G ++DK+ +L++AE G+S
Sbjct: 1 MSNELIFGFHSVEAILAKEPERFIEIYALKG---------REDKR-LNPILELAEQFGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++ + L+ HQGL+ + K+LD I A + L V LD VTDP N
Sbjct: 51 VQFMHRKTLDEKADGEQHQGLIAKVKAGKTYSEKDLDEIIARHETPFLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +RSA G V++ NSA L+GV K + G+ E + L + N+ + L + G
Sbjct: 110 LGACLRSADAAGVHAVIVPKDNSAKLNGVARKVACGAAETVPLVHVTNLARTLREIKDAG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
V+G + + + G P LV+G+EGTG+R L C LV+IP
Sbjct: 170 VWVIGTAGETDTHVFDAKLTG-PIALVMGAEGTGMRRLTREHCDTLVKIP---------- 218
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V SLNVSVA G+ L ++
Sbjct: 219 ------------------MVGTVSSLNVSVATGICLFEIL 240
>gi|430003288|emb|CCF19073.1| tRNA/rRNA metyltransferase [Rhizobium sp.]
Length = 294
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 136/285 (47%), Gaps = 32/285 (11%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQ-RWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGP 299
DS + R + R + R E P R NR+++ W A P P V LYG+
Sbjct: 13 DSHYATLRRAVRDAKRERGEIPTPDPRKNRRKD---VAW--APPQLQPDQVF--LYGLHT 65
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
V AAL+ R+ L V + N + G + L ++ DL+
Sbjct: 66 VRAALANPQRQLIRLSV-------TQNALARLDMGDTEALPCPADL------VQPQDLDR 112
Query: 360 VVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
V+G + HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA
Sbjct: 113 VLGPDAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVA 165
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
FGA +V ++S SGV++K++SG+LEL+ N+ L G++ +G S
Sbjct: 166 FGAGALVTTQRHSPVESGVLAKSASGALELIPHIQVTNLADALNELHALGFQTVGLD-SE 224
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL E G LVLGSEG GLR + T L R+ PG I
Sbjct: 225 GPQPLEETLAGDKIALVLGSEGKGLRHKTRETVTALARLDMPGEI 269
>gi|187935194|ref|YP_001884456.1| TrmH family RNA methyltransferase [Clostridium botulinum B str.
Eklund 17B]
gi|187723347|gb|ACD24568.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
B str. Eklund 17B]
Length = 286
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 133/279 (47%), Gaps = 48/279 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQ----EGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ G VL AL A+ R LY+ EG S+++ K KDKK I I
Sbjct: 47 IIGRNAVLEALKAE-RTIETLYISNSKLEG-SINAIISKAKDKK-------------ILI 91
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNL 409
KE K L+ + N HQG++ +P E ++ ++ ++ + + V LDEV DP NL
Sbjct: 92 KEVDKRKLDSMCNNAVHQGVIARVTPYEYSEVSDILELAEKKGENPFIVILDEVEDPHNL 151
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
G+IIR+A FG G+++ + SA ++ +V K+S G++E +++ N+ + E G
Sbjct: 152 GSIIRTAELFGVHGIIIPKRRSASVTTMVYKSSVGAIEHVKVARVTNLNSVIDELKEKGI 211
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V G + ++ + G +++G+EG G+ L + C L++IP G+
Sbjct: 212 WVYGTDIRAEEYSY-QTDFGGACAIIIGNEGKGISKLTLKKCDKLIKIP-------MVGK 263
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I+ SLN SVA G++++ ++
Sbjct: 264 IN---------------------SLNASVAGGIIMYEVL 281
>gi|154508505|ref|ZP_02044147.1| hypothetical protein ACTODO_01006 [Actinomyces odontolyticus ATCC
17982]
gi|153798139|gb|EDN80559.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
odontolyticus ATCC 17982]
Length = 325
Score = 105 bits (261), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A MG + E ++ DL++ HQG+ ++ E +L S
Sbjct: 110 KDDR-VEEVVRLASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGSL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVE 508
+ N+++ L + + G+ V+G A PL + P ++V G+EG GL LV
Sbjct: 229 PVARVTNLVRALEEAKQAGYFVVGLDGGGDA-PLRGLSLADGPLVVVTGAEGAGLSRLVR 287
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V +IP+ T VESLN +VA G+ L+ +
Sbjct: 288 ETCDQIV----SIPIAST------------------------VESLNAAVATGIALYEV 318
>gi|117927294|ref|YP_871845.1| RNA methyltransferase [Acidothermus cellulolyticus 11B]
gi|117647757|gb|ABK51859.1| RNA methyltransferase, TrmH family, group 3 [Acidothermus
cellulolyticus 11B]
Length = 250
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 117/235 (49%), Gaps = 32/235 (13%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+++ + E+ GI I+ ++ +L+ + G HQG+V+ P +E+ A E
Sbjct: 40 VQEIRERCEHDGIEIRVVARRELDRLTGT-GHQGVVVVVPPFTYADEREIVD-RAFERAP 97
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +A+D VTDP+NLGAI+RSA FGASGV+L + +A ++ V KAS+G+L M L
Sbjct: 98 HLLLAVDGVTDPRNLGAIVRSAAAFGASGVLLPKRRAAGVTPAVWKASAGALARMPLARV 157
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAV--PLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
NM + LV+ AE V+G S + G P LV+G+EG GL LV CT
Sbjct: 158 TNMARVLVALAERNVTVVGLSADGDTTIQQAADDAGGGPVALVVGAEGRGLSRLVREKCT 217
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ IP G+ VESLNVSVA G+ L L
Sbjct: 218 VVASIP-------------------MTGT---------VESLNVSVATGIALFVL 244
>gi|357400074|ref|YP_004911999.1| tRNA/rRNA methyltransferase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|386356116|ref|YP_006054362.1| tRNA/rRNA methyltransferase [Streptomyces cattleya NRRL 8057 = DSM
46488]
gi|337766483|emb|CCB75194.1| Uncharacterized tRNA/rRNA methyltransferase MMAR_5079 [Streptomyces
cattleya NRRL 8057 = DSM 46488]
gi|365806624|gb|AEW94840.1| tRNA/rRNA methyltransferase [Streptomyces cattleya NRRL 8057 = DSM
46488]
Length = 320
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 137/273 (50%), Gaps = 42/273 (15%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G PV+ AL A+ ALYVQ+ + +++R ++ +K+A G+ + E +
Sbjct: 80 GRNPVVEALRAEI-PVTALYVQQ--YIDNDDRVRE-------AVKLATERGVPLMEAPRV 129
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
+L+ + G HQGL L P + EL +A++ A L VALD VTDP+NLGA++RS
Sbjct: 130 ELDRMTGGLNHQGLALQIPPYDYAHPDELTEAAAEQADAPLIVALDGVTDPRNLGAVVRS 189
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
FG GVV+ + +A ++ K S+G+ + + N+ + L + + G V+G +
Sbjct: 190 VAAFGGHGVVIPERRAAGMTAGAWKTSAGTAAQVPVARATNLTRALEAYQKAGLTVVGLA 249
Query: 476 VSSKAVPLN--EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ V L E+ G P ++V+GSEG GL LV +C VRIP +P
Sbjct: 250 ADGE-VDLTDLEVLDG-PVVVVVGSEGKGLSRLVGETCDLRVRIP--MP----------- 294
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
G A ESLN VAAGV+L+
Sbjct: 295 ------GGA---------ESLNAGVAAGVVLYE 312
>gi|341878742|gb|EGT34677.1| hypothetical protein CAEBREN_17231 [Caenorhabditis brenneri]
Length = 294
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 91/298 (30%), Positives = 144/298 (48%), Gaps = 57/298 (19%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
+P++ GE L+G+ VL A+ + R FY++Y+++ + NR D + +++L E +
Sbjct: 37 IPELKGEALFGLHSVLEAMRSGKRTFYSVYLKKTI----ENRADSDSR-IKEILSKIEEL 91
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
GI + L+ + + H G+ +DA+ L+ K + S++V D+V D
Sbjct: 92 GIEKTLLTDDQLDRLTEYQLHNGICMDATALKFSKF--------ETKNVSIFV--DKVLD 141
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAP--LSGVVSKASSGSLELMELRYCNNMMQFLVS 463
P NLGAI RSA+FFGA G+ L K P ++ + K+S G+LE + ++ + +F
Sbjct: 142 PGNLGAIGRSAWFFGADGIGL-VKGRGPKTVTPAMIKSSCGALEHLPVQQFADFNEFRDE 200
Query: 464 SAENGWRV-----------LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
+G + LG +V S LNE P + +VLG EG G+ + C
Sbjct: 201 IKSSGGEIVATCDPLAAEKLGLTVKS----LNEWKPSKTVGIVLGDEGIGISKGILNLCD 256
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570
++ I PV EQ QS V SLNVSV AG+LLHH+ H
Sbjct: 257 TVISIA---PV------------------REQ-QS--NVTSLNVSVVAGILLHHISLH 290
>gi|395786107|ref|ZP_10465835.1| RNA methyltransferase, TrmH family, group 3 [Bartonella tamiae
Th239]
gi|423716999|ref|ZP_17691189.1| RNA methyltransferase, TrmH family, group 3 [Bartonella tamiae
Th307]
gi|395424565|gb|EJF90752.1| RNA methyltransferase, TrmH family, group 3 [Bartonella tamiae
Th239]
gi|395427788|gb|EJF93871.1| RNA methyltransferase, TrmH family, group 3 [Bartonella tamiae
Th307]
Length = 276
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 130/269 (48%), Gaps = 34/269 (12%)
Query: 263 EYQRWNRQENS--GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYALY-V 316
Y R RQ + G+ K+ PK LYG+ V AALS R L+
Sbjct: 10 HYARLRRQHRASLGKNPAKKPTKRIEPKPYDNSELRLYGLHTVRAALSNPKRNLIRLFAT 69
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAEN-MGISIKETSKHDLNMVVGNRP-HQGLVLDAS 374
Q LS L +AE+ + TS +L+++VGN HQG+VL+
Sbjct: 70 QNALS----------------RLDIAESSLPCPFVLTSPKELDILVGNEAVHQGIVLETL 113
Query: 375 PLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPL 434
PL+ ++ +L A L + LD+VTDP N+GA++RSA F AS ++ +SA
Sbjct: 114 PLKTRRLSQLA-------NAPLLILLDQVTDPHNVGAVMRSAVAFNASALITTHHHSAKE 166
Query: 435 SGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTIL 494
SGV++K++SG+LEL++ N+ + L+ + G+ +G S L + G L
Sbjct: 167 SGVLAKSASGALELIDHISVRNLSETLIELHDLGFLTIGLD-SQGEYDLEKTLNGDKIAL 225
Query: 495 VLGSEGTGLRPLVERSCTHLVRI--PGNI 521
VLG+EG GLR + L R+ PG I
Sbjct: 226 VLGAEGKGLRQKTRETVNALARLDMPGQI 254
>gi|336120353|ref|YP_004575136.1| rRNA methyltransferase [Microlunatus phosphovorus NM-1]
gi|334688148|dbj|BAK37733.1| putative rRNA methyltransferase [Microlunatus phosphovorus NM-1]
Length = 328
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/270 (30%), Positives = 126/270 (46%), Gaps = 42/270 (15%)
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
VL AL A+ A YV EG ++D + +LK+A + + + ++++L+
Sbjct: 95 VLEALEAEIPTKSA-YVAEG--------AERDDR-LRDILKLAAERSLPLLQVTRNELDK 144
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+ G HQG+ L E +L + + D L VALD VTDP+NLGAIIRSA F
Sbjct: 145 MTGGAVHQGVALQLPAFEYAHPDDLLAAAIEADTDPLIVALDSVTDPRNLGAIIRSAAAF 204
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG--GSVS 477
GA GV++ + SA ++ K S+G+ + + N+ + L + A G ++G G
Sbjct: 205 GAHGVLIPERRSAGMTAAAWKTSAGAAARIPVARATNLTRTLKAYASAGLFLVGLDGESD 264
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+ + E P +LV+GSEG GL LV +C + IP
Sbjct: 265 TDIAEIGEA--SGPLVLVVGSEGAGLSRLVRETCDTVAAIP------------------- 303
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
AVESLN VAAG+ L+ +
Sbjct: 304 ---------MSGAVESLNAGVAAGIALYEI 324
>gi|318058499|ref|ZP_07977222.1| RNA methyltransferase [Streptomyces sp. SA3_actG]
gi|318079335|ref|ZP_07986667.1| RNA methyltransferase [Streptomyces sp. SA3_actF]
Length = 314
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 139/300 (46%), Gaps = 40/300 (13%)
Query: 268 NRQENSG-RTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNN 326
NR N+ + T + A + K E + G PV AL ALYVQ+ N+
Sbjct: 44 NRLANAKVKQTQRRTAAKSRGKSSSELVVGRNPVFEALRDGV-PATALYVQQ---FIDND 99
Query: 327 RKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+ +D LK+A + G I + E + +L+ + HQGLVL P E ++L
Sbjct: 100 ERVRD------ALKLAADRGGIHLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLP 153
Query: 386 PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS 445
+ DE L VALD VTDP+NLGAI+RS FG GVV+ + +A ++ K+S+G+
Sbjct: 154 AAAYDEGDDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGT 213
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+ + L + + G V+G + + P ++V+GSEG GL
Sbjct: 214 AARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGPVVIVIGSEGKGLSR 273
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV +C + V IP +P G A ESLN VAAG++++
Sbjct: 274 LVGETCDYRVSIP--MP-----------------GGA---------ESLNAGVAAGIVMY 305
>gi|312144265|ref|YP_003995711.1| TrmH family RNA methyltransferase [Halanaerobium hydrogeniformans]
gi|311904916|gb|ADQ15357.1| RNA methyltransferase, TrmH family, group 3 [Halanaerobium
hydrogeniformans]
Length = 246
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 133/281 (47%), Gaps = 40/281 (14%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G V AL A R+ + +Y++E S + + +L+MAE I I S
Sbjct: 6 GRNAVYEALRA-GRKIHRIYIKENSS----------SEIIDDILEMAEKDNIPITRISNK 54
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
L+ + HQG++ +A L+ I ++ I ++ SL + LDE+ DP N GAIIR+
Sbjct: 55 KLSETARSHAHQGIIAEADHLKEYNINDIINIKDEKPGDSLTIILDEIKDPHNFGAIIRT 114
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
AY GA VV + + ++ VV KA++G+ E + L +N+ + + + + V+G
Sbjct: 115 AYAAGADAVVYQDRRAVDITPVVLKAAAGAAEHIPLVKVSNINYAIKALKDAHFWVVGAD 174
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
+ + G T LV+GSEG+GLR LV +C LV+IP GE+
Sbjct: 175 AAGEQSHFEADFSGS-TALVIGSEGSGLRRLVRENCDFLVKIP-------MKGELG---- 222
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNS 576
SLN SVAA V+++ + + +NS
Sbjct: 223 -----------------SLNASVAAAVIIYEIFRQEEKDNS 246
>gi|294790246|ref|ZP_06755404.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
F0304]
gi|294458143|gb|EFG26496.1| RNA methyltransferase, TrmH family, group 3 [Scardovia inopinata
F0304]
Length = 326
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 119/252 (47%), Gaps = 42/252 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++++A G+ I E + ++N + + HQG+++ +P ++EL
Sbjct: 93 NRIEHDDRTRE-IIRLAGLEGLKILEADRLEMNRIARSVNHQGVIIKVAPYHYKSLQELV 151
Query: 386 PISADEDQA-------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+ + QA L++ALD VTDPQNLGA+IRSA FGASGV+L + SA
Sbjct: 152 DRAEAKAQALGSASAKAKALAQPLFIALDGVTDPQNLGAVIRSAAAFGASGVILPERRSA 211
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K S+G+ M + N+ + + S E G+ +G A P
Sbjct: 212 SVTAAAWKVSAGAAAHMPVARVVNLTKAIDSLKERGFYSIGLDGGGTAQVGYSGFETDPL 271
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
I+VLGSEG G+ LV C +V IP S VE
Sbjct: 272 IVVLGSEGKGISRLVREQCDAIVSIP--------------------------MTSL--VE 303
Query: 553 SLNVSVAAGVLL 564
SLN SVAAG+ L
Sbjct: 304 SLNASVAAGIAL 315
>gi|418469707|ref|ZP_13040171.1| tRNA/rRNA methyltransferase, partial [Streptomyces coelicoflavus
ZG0656]
gi|371549689|gb|EHN77372.1| tRNA/rRNA methyltransferase, partial [Streptomyces coelicoflavus
ZG0656]
Length = 254
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 121/252 (48%), Gaps = 36/252 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 32 LYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 83
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + DE L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 84 PPYEYAHPEDLVAAAHDEGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 143
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K S+G+ + N+ + L + + G V+G + +A + P +
Sbjct: 144 MTAGAWKTSAGTAARTPVARATNLTRALETYQKAGITVVGLAADGEAELGDLAALDGPVV 203
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG GL LV +C VRIP +P G A ES
Sbjct: 204 IVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------ES 235
Query: 554 LNVSVAAGVLLH 565
LN VAAG++L+
Sbjct: 236 LNAGVAAGIVLY 247
>gi|443635008|ref|ZP_21119179.1| RlmB [Bacillus subtilis subsp. inaquosorum KCTC 13429]
gi|443345199|gb|ELS59265.1| RlmB [Bacillus subtilis subsp. inaquosorum KCTC 13429]
Length = 249
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/233 (30%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + + ++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEERNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVVRV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ N + P LV+GSEG G+ LV+ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASAREDYRN-MDGNMPLALVIGSEGKGMGRLVKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|424894617|ref|ZP_18318191.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393178844|gb|EJC78883.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 296
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 134/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPQKRRR--GSEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+ + ++ R + D E +GI + S D++ V
Sbjct: 73 RAALDNPERKKIKLFATQ----NALARLEVD----------VETLGIPFEMVSPQDIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGP 231
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
A L G+ LVLGSEG GLR + L R+ PG I
Sbjct: 232 AA-LEGTFSGEKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|86158008|ref|YP_464793.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774519|gb|ABC81356.1| RNA methyltransferase TrmH, group 3 [Anaeromyxobacter dehalogenans
2CP-C]
Length = 256
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/226 (31%), Positives = 113/226 (50%), Gaps = 12/226 (5%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV V L A + +++ EG + + + ++ ++ G ++
Sbjct: 4 VYGVNQVRELLRAGGGDVAEVWLAEGGTRGA---------AFAELERLGRGAGAKVRAAP 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ + G HQG+V + ++++L + + L V LD V DP NLGAII
Sbjct: 55 RAKLDRLAGTDRHQGVVAVVADFRYAELEDLLARAQASGRPPLLVVLDGVEDPHNLGAII 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA+ GA GVV+ + ++ V+KAS+G++E + N+ + L E G W V
Sbjct: 115 RSAHALGAHGVVIPRDRAVGVTPAVAKASAGAVERCPVARVTNVAKTLERLKEAGIWSVA 174
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ +A L E+ PT LVLGSEG GLRPLV R+C RIP
Sbjct: 175 FAADGERA--LGEVDLKGPTALVLGSEGEGLRPLVRRTCDLSARIP 218
>gi|288923467|ref|ZP_06417588.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
gi|288345177|gb|EFC79585.1| RNA methyltransferase, TrmH family, group 3 [Frankia sp. EUN1f]
Length = 361
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 118/230 (51%), Gaps = 33/230 (14%)
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA-SLWV 398
++A G+++ + + +L+ + N PHQGL L P E D ++A + A L V
Sbjct: 152 RLAGRAGLTVVDVGRVELDRLCPNAPHQGLALSVPPFEYAHPD--DVLAATQSAAPGLVV 209
Query: 399 ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMM 458
ALD VTDP+NLGA++RSA FGA+GVV+ + +A ++ K S+G+ + + N+
Sbjct: 210 ALDGVTDPRNLGAVVRSAAAFGANGVVVPERRAAGMTAAAWKTSAGAAARLPVARAVNLT 269
Query: 459 QFLVSSAENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ L S AE+G V+G + + V ++++ P +LV+GSEG GL LV C VRI
Sbjct: 270 RTLRSFAESGLFVVGLAADGE-VDIDDLQVAADPLVLVVGSEGRGLSRLVGECCDLKVRI 328
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
P AG A+ESLN VA G+ L +
Sbjct: 329 P-------MAG---------------------AMESLNAGVATGIALAEI 350
>gi|78184877|ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
gi|78169171|gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
Length = 652
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L V G HQG+ L + + + + L ++ +
Sbjct: 323 FLQLLREAKTSGVLVEEVTWARLAQVTGGSVHQGIALQTAAADTLDLSALIEGCSELGEP 382
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGA++RSA GA G+VL + SA L+G +K ++G++E + +
Sbjct: 383 PLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARV 442
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L ++G+RV+G + V L ++ P +LV GSE GL L R C L
Sbjct: 443 VNLNRSLEKLKDSGYRVIGLAAEGD-VTLMDVDLEGPLVLVTGSEDQGLSLLTRRHCDQL 501
Query: 515 VRIP 518
VRIP
Sbjct: 502 VRIP 505
>gi|375310825|ref|ZP_09776090.1| tRNA/rRNA methyltransferase [Paenibacillus sp. Aloe-11]
gi|375077193|gb|EHS55436.1| tRNA/rRNA methyltransferase [Paenibacillus sp. Aloe-11]
Length = 248
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 120/228 (52%), Gaps = 30/228 (13%)
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
A+ GI +++ K L+ +V HQG+V A+P +++EL + D+ + + LD
Sbjct: 43 AKKAGIIVQQVDKRKLDQMVPGIQHQGVVAQAAPFAYAEVEELLANARDKGEEPFLILLD 102
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
E+ DP NLG+I+R+A GA GV++ + SA ++ VSK S+G++E + + NN+ Q +
Sbjct: 103 EIEDPHNLGSILRTADCTGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTI 162
Query: 462 VSSAENGWRVLGGSV-SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
E G V+G V ++ V N + G P +V+G+E G+ L+ C LV++P
Sbjct: 163 DRLKEEGVWVVGTDVAATDPVFGNGVFTG-PVAIVIGNENKGMGRLIREKCDVLVKLP-- 219
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AG+I+ SLN SVAAGV+++ ++
Sbjct: 220 -----MAGQIN---------------------SLNASVAAGVVMYEVL 241
>gi|289752294|ref|ZP_06511672.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
gi|289692881|gb|EFD60310.1| tRNA/rRNA methyltransferase [Mycobacterium tuberculosis T92]
Length = 298
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 87/271 (32%), Positives = 130/271 (47%), Gaps = 40/271 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVFIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
A Q ESLN SVAAGV
Sbjct: 283 ---------MAAQ------AESLNASVAAGV 298
>gi|187250823|ref|YP_001875305.1| rRNA methylase [Elusimicrobium minutum Pei191]
gi|186970983|gb|ACC97968.1| rRNA methylase [Elusimicrobium minutum Pei191]
Length = 249
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 71/256 (27%), Positives = 123/256 (48%), Gaps = 21/256 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++GV V + + R LYV + K +G E +K A+ I I
Sbjct: 8 VFGVHAVTEVIKNRKRRVIQLYVLD---------NKAGHRGIEDAIKAAKRNNIKIDRMD 58
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE-DQASLWVALDEVTDPQNLGAI 412
++ + HQG+ P++++++ +D I ++ LW+A+DE+TDPQNLG+I
Sbjct: 59 VKTMDALTKKGNHQGIAARVEPVKIMRL--IDAIDVSRGNKKDLWIAVDEMTDPQNLGSI 116
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSA G S ++L ++ + L+ V K +SG+ E + + N+ L+ + G+ +
Sbjct: 117 IRSAACLGFSTIILPSRRTVGLTPSVYKVASGATEKVTVVEVANLATALLDLKDEGFWIY 176
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G + +++ + P +LV+GSEGTG+R C +V IP G +D
Sbjct: 177 GADMGGQSIVKTDY--SFPAVLVVGSEGTGIREKTAEHCDQVVSIPQ------APGSVDS 228
Query: 533 VDADGNHGSAEQFQSF 548
++A N S F F
Sbjct: 229 LNA-ANAASIIMFDMF 243
>gi|119026609|ref|YP_910454.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
ATCC 15703]
gi|118766193|dbj|BAF40372.1| tRNA/rRNA methyltransferase protein [Bifidobacterium adolescentis
ATCC 15703]
Length = 329
Score = 104 bits (260), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL------------ 384
+++++A G+ + E + +++ + + HQG+VL A P + + EL
Sbjct: 101 EIVRLAGIHGLHLLEADRLEMDRIARSSNHQGVVLKAQPFQYSSLAELVDRADKKARAME 160
Query: 385 --DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D SA L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 161 AADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 220
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + S E G+ +G A+ P ++VLGSEG G
Sbjct: 221 AGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNG 280
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP S M VESLN SVAAG+
Sbjct: 281 LSRLVREACDSIAGIP---------------------------MSNM-VESLNASVAAGI 312
Query: 563 LLH 565
L+
Sbjct: 313 TLY 315
>gi|375089949|ref|ZP_09736271.1| RNA methyltransferase, TrmH family, group 3 [Facklamia languida
CCUG 37842]
gi|374566235|gb|EHR37482.1| RNA methyltransferase, TrmH family, group 3 [Facklamia languida
CCUG 37842]
Length = 273
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 116/236 (49%), Gaps = 30/236 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++LK+A+ G+ +E K L+ + HQG+VL P E ++E ++ ++
Sbjct: 66 RILKLAQENGVVYQEVPKAKLDELSNQGNHQGVVLSVPPFEYSTLEEAFDLAQAREEDPF 125
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LD + DP NLG+I+R+A G GV+L + SA L+GVV+K S+G++E + + N
Sbjct: 126 LLILDGIEDPHNLGSILRTADAVGVHGVILPKRRSASLTGVVAKTSTGAVEHVPVIRVTN 185
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ Q + E G V ++ + + E P L++G+EG G+ PLV +S V
Sbjct: 186 LSQTISQLKERGIWVFTTAMDGE--DMREWQSHGPIALIIGNEGQGVSPLVAQSADGTVT 243
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
IP G V+SLN SVAA VL++ + H++
Sbjct: 244 IP-------MVGH---------------------VQSLNASVAAAVLMYEVARHRI 271
>gi|21222631|ref|NP_628410.1| tRNA/rRNA methyltransferase [Streptomyces coelicolor A3(2)]
gi|7242757|emb|CAB77330.1| putative tRNA/rRNA methyltransferase [Streptomyces coelicolor
A3(2)]
Length = 314
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 120/252 (47%), Gaps = 36/252 (14%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 92 LYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVLQV 143
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + DE L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 144 PPYEYAHPEDLVAAAHDEGIDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 203
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K S+G+ + N+ + L + G V+G + +A + P +
Sbjct: 204 MTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGITVVGLAADGEAELGDLAALDGPVV 263
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG GL LV +C VRIP +P G A ES
Sbjct: 264 IVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------ES 295
Query: 554 LNVSVAAGVLLH 565
LN VAAG++L+
Sbjct: 296 LNAGVAAGIVLY 307
>gi|429201703|ref|ZP_19193153.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces ipomoeae
91-03]
gi|428662780|gb|EKX62186.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces ipomoeae
91-03]
Length = 313
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/253 (32%), Positives = 122/253 (48%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + E GI + E + +L+ + HQGLVL
Sbjct: 91 LYVQQFID--------NDERVREALQLAGERGGIHLMEAPRPELDRMTNGLNHQGLVLQV 142
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + DE + L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 143 PPYEYAHPEDLVAAAFDEGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 202
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPT 492
++ K S+G+ + N+ + L S + G V+G + + V + E+ P
Sbjct: 203 MTAGAWKTSAGTAARTPVARATNLTRALESYKKAGLVVVGLAADGE-VEVGELEALDGPV 261
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C VRIP +P G A E
Sbjct: 262 VIVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------E 293
Query: 553 SLNVSVAAGVLLH 565
SLN VAAGV+L+
Sbjct: 294 SLNAGVAAGVVLY 306
>gi|116070438|ref|ZP_01467707.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
gi|116065843|gb|EAU71600.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. BL107]
Length = 340
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/184 (33%), Positives = 103/184 (55%), Gaps = 1/184 (0%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A+ G+ ++E + L V G HQG+ L + + + + L ++ +
Sbjct: 7 FLQLLREAKASGVLVEEVTWARLAQVTGGSVHQGIALQTAAADTLDLNALIDGCSELGEP 66
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGA++RSA GA G+VL + SA L+G +K ++G++E + +
Sbjct: 67 PLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAMEHLPVARV 126
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L ++G+RV+G + V L ++ P +LV GSE GL L R C L
Sbjct: 127 VNLNRSLEKLKDSGYRVIGLAAEGD-VTLMDVDLDGPLVLVTGSEDQGLSLLTRRHCDQL 185
Query: 515 VRIP 518
VRIP
Sbjct: 186 VRIP 189
>gi|385680745|ref|ZP_10054673.1| RNA methyltransferase YjfH [Amycolatopsis sp. ATCC 39116]
Length = 318
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 100/339 (29%), Positives = 152/339 (44%), Gaps = 51/339 (15%)
Query: 223 AKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTE-KPEYQRWNRQENSGRTTWKEA 281
+K +G +EG + AV S +RR + R E +P + + R + K
Sbjct: 5 SKRRGAVRKEGTKKGAVVGSGGQRRRGLEGKGPTPRAEMRPGHPKQKRAAAAAARAEKSR 64
Query: 282 APSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKM 341
P+++ G PV+ AL A L+V L++ +++R + +++
Sbjct: 65 DRREGPEII----AGRNPVVEALRAGV-PGTTLFVA--LNIDADDR-------VTEAVRL 110
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
A + GISI E + +L+ HQGL L P E +L I+ + + L VALD
Sbjct: 111 AADKGISILEIPREELDRKTNRAVHQGLGLQVPPFEYSHPDDLLAIAKNSGEPPLLVALD 170
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
VTDP+NLGA++RSA FGA GV+L + SA ++ V + S+G+ M + N+ + L
Sbjct: 171 GVTDPRNLGAVVRSAAAFGAHGVLLPQRRSAGVTAVAWRTSAGTAAKMPIAIATNLTRQL 230
Query: 462 VSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
AE G + G GSV + L P ++V+GSEG GL LV +C V I
Sbjct: 231 KLWAEEGLMIAGLDADGSVGIDDLSLAT----DPLVVVVGSEGRGLSRLVRETCDETVSI 286
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNV 556
P + AG VESLN
Sbjct: 287 P------MAAG----------------------VESLNA 297
>gi|410081590|ref|XP_003958374.1| hypothetical protein KAFR_0G02050 [Kazachstania africana CBS 2517]
gi|372464962|emb|CCF59239.1| hypothetical protein KAFR_0G02050 [Kazachstania africana CBS 2517]
Length = 335
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 92/348 (26%), Positives = 158/348 (45%), Gaps = 80/348 (22%)
Query: 262 PEYQR---WNRQENSGRTTWKEAAPSTVP---KMVGEG----LYGVGPVLAALSAKTREF 311
P+Y+R W R + + + W S + + EG +YG V++AL+ R
Sbjct: 30 PQYRRVKAWERDKKN-KDDWFRDKYSHIHAERRRRKEGNSAFIYGHNSVVSALNDAKRGR 88
Query: 312 YALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
Y + ++ E++ K+ + GI I++ SK +LN + GN H LVL
Sbjct: 89 KLYYHGKNIN--------------EEIEKLCDRSGICIEKVSKQELNALSGNNVHNNLVL 134
Query: 372 DASPLEMVKIKELDPISADEDQAS----------------LWVALDEVTDPQNLGAIIRS 415
+A+PL++ +D +S D + L V +D++TDP N+G+I+RS
Sbjct: 135 EAAPLKLDTASSID-VSDDAIEVHTMSDNQKIVRMNRGNPLGVLMDKITDPFNVGSIVRS 193
Query: 416 AYFFG-----ASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
++ G ++G V K S + KASSG++E + + ++ ++F+ + + GW
Sbjct: 194 CFYMGVDFALSAGSVNVEKG---FSSTIHKASSGAIESIPVYNIDDKVKFITAMKDKGWV 250
Query: 471 VLGGSVSS----KAVPLNEIPPGQPT---ILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
+ +V S K + ++++ T ILVLGSEG G+ V+ C + V IP
Sbjct: 251 FVAATVDSDNSEKRILMDDLRIVGGTSGVILVLGSEGQGISKRVQHECDYTVEIP----- 305
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
+ +V+SLNV VAAG+LL L +
Sbjct: 306 ------------------VRARKKNRSVDSLNVGVAAGILLEKLTAEK 335
>gi|154487598|ref|ZP_02029005.1| hypothetical protein BIFADO_01455 [Bifidobacterium adolescentis
L2-32]
gi|154083727|gb|EDN82772.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
adolescentis L2-32]
Length = 330
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 77/243 (31%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL------------ 384
+++++A G+ + E + +++ + + HQG+VL A P + + EL
Sbjct: 103 EIVRLAGIHGLHLLEADRLEMDRIARSSNHQGVVLKAQPFQYSSLAELVDRADKKARAME 162
Query: 385 --DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D SA L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 AADSESARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + S E G+ +G A+ P ++VLGSEG G
Sbjct: 223 AGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP S M VESLN SVAAG+
Sbjct: 283 LSRLVREACDSIAGIP---------------------------MSNM-VESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 TLY 317
>gi|256824258|ref|YP_003148218.1| rRNA methylase, , group 3 [Kytococcus sedentarius DSM 20547]
gi|256687651|gb|ACV05453.1| rRNA methylase, putative, group 3 [Kytococcus sedentarius DSM
20547]
Length = 323
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 128/280 (45%), Gaps = 48/280 (17%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G VL AL + + LYV ++ S++R K+ L++A G+ + E
Sbjct: 79 EMVLGRNAVLEALRTQVPATH-LYVAS--TIESDDRVKE-------ALRLASEQGVPLLE 128
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ + HQGLVL P + L + A D L+VALD +TDP+NLGA
Sbjct: 129 AGRPELDRLSNGEVHQGLVLQVPPYTYGDLDTL--LDATADVTPLFVALDGITDPRNLGA 186
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA FGA G+++ + SA ++ + S+G+ + + N+ + L G V
Sbjct: 187 IIRSAAAFGAHGIIITERRSAGVTAAAWRTSAGAAARLPVARVTNLNRALQELRSQGIFV 246
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
+G G V +PL P ++V+GSEG G+ L C +V IP +TA
Sbjct: 247 IGLDADGDVELPGLPLAP----DPLVVVVGSEGKGISRLTREHCDQIVSIP------MTA 296
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
G ESLN AA V L+ +
Sbjct: 297 GN----------------------ESLNAGTAAAVTLYEI 314
>gi|169627675|ref|YP_001701324.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus ATCC
19977]
gi|365868539|ref|ZP_09408089.1| putative tRNA/rRNA methyltransferase [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|414579691|ref|ZP_11436834.1| hypothetical protein MA5S1215_0260 [Mycobacterium abscessus
5S-1215]
gi|418418743|ref|ZP_12991928.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus
subsp. bolletii BD]
gi|419712161|ref|ZP_14239623.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus M93]
gi|419717334|ref|ZP_14244719.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus M94]
gi|420879163|ref|ZP_15342530.1| hypothetical protein MA5S0304_4943 [Mycobacterium abscessus
5S-0304]
gi|420884382|ref|ZP_15347742.1| hypothetical protein MA5S0421_5179 [Mycobacterium abscessus
5S-0421]
gi|420887303|ref|ZP_15350660.1| hypothetical protein MA5S0422_0349 [Mycobacterium abscessus
5S-0422]
gi|420892634|ref|ZP_15355978.1| hypothetical protein MA5S0708_0257 [Mycobacterium abscessus
5S-0708]
gi|420900968|ref|ZP_15364299.1| hypothetical protein MA5S0817_4495 [Mycobacterium abscessus
5S-0817]
gi|420906259|ref|ZP_15369577.1| hypothetical protein MA5S1212_5179 [Mycobacterium abscessus
5S-1212]
gi|420913231|ref|ZP_15376543.1| hypothetical protein MA6G0125R_4768 [Mycobacterium abscessus
6G-0125-R]
gi|420914435|ref|ZP_15377741.1| hypothetical protein MA6G0125S_0504 [Mycobacterium abscessus
6G-0125-S]
gi|420919550|ref|ZP_15382849.1| hypothetical protein MA6G0728S_0137 [Mycobacterium abscessus
6G-0728-S]
gi|420925318|ref|ZP_15388607.1| hypothetical protein MA6G1108_0493 [Mycobacterium abscessus
6G-1108]
gi|420964860|ref|ZP_15428077.1| hypothetical protein MM3A0810R_0594 [Mycobacterium abscessus
3A-0810-R]
gi|420970156|ref|ZP_15433357.1| hypothetical protein MA5S0921_0448 [Mycobacterium abscessus
5S-0921]
gi|420975666|ref|ZP_15438852.1| hypothetical protein MA6G0212_0562 [Mycobacterium abscessus
6G-0212]
gi|420981045|ref|ZP_15444218.1| hypothetical protein MA6G0728R_0496 [Mycobacterium abscessus
6G-0728-R]
gi|421005696|ref|ZP_15468814.1| hypothetical protein MA3A0119R_0591 [Mycobacterium abscessus
3A-0119-R]
gi|421011090|ref|ZP_15474189.1| hypothetical protein MA3A0122R_0651 [Mycobacterium abscessus
3A-0122-R]
gi|421019616|ref|ZP_15482673.1| hypothetical protein MA3A0122S_3848 [Mycobacterium abscessus
3A-0122-S]
gi|421021674|ref|ZP_15484726.1| hypothetical protein MA3A0731_0495 [Mycobacterium abscessus
3A-0731]
gi|421024025|ref|ZP_15487071.1| hypothetical protein MA3A0731_2557 [Mycobacterium abscessus
3A-0731]
gi|421027145|ref|ZP_15490184.1| hypothetical protein MA3A0930R_0600 [Mycobacterium abscessus
3A-0930-R]
gi|421034408|ref|ZP_15497429.1| hypothetical protein MA3A0930S_2425 [Mycobacterium abscessus
3A-0930-S]
gi|421047378|ref|ZP_15510376.1| hypothetical protein MMCCUG48898_0354 [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|254806513|sp|B1MGY6.1|Y572_MYCA9 RecName: Full=Uncharacterized tRNA/rRNA methyltransferase MAB_0572
gi|169239642|emb|CAM60670.1| Putative tRNA/rRNA methyltransferase [Mycobacterium abscessus]
gi|364000240|gb|EHM21440.1| putative tRNA/rRNA methyltransferase [Mycobacterium massiliense
CCUG 48898 = JCM 15300]
gi|364001916|gb|EHM23108.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus
subsp. bolletii BD]
gi|382938206|gb|EIC62546.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus M93]
gi|382938400|gb|EIC62736.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus M94]
gi|392080145|gb|EIU05971.1| hypothetical protein MA5S0421_5179 [Mycobacterium abscessus
5S-0421]
gi|392084072|gb|EIU09897.1| hypothetical protein MA5S0304_4943 [Mycobacterium abscessus
5S-0304]
gi|392093427|gb|EIU19224.1| hypothetical protein MA5S0422_0349 [Mycobacterium abscessus
5S-0422]
gi|392098329|gb|EIU24123.1| hypothetical protein MA5S0817_4495 [Mycobacterium abscessus
5S-0817]
gi|392104163|gb|EIU29949.1| hypothetical protein MA5S1212_5179 [Mycobacterium abscessus
5S-1212]
gi|392108515|gb|EIU34295.1| hypothetical protein MA5S0708_0257 [Mycobacterium abscessus
5S-0708]
gi|392115225|gb|EIU40994.1| hypothetical protein MA6G0125R_4768 [Mycobacterium abscessus
6G-0125-R]
gi|392124215|gb|EIU49976.1| hypothetical protein MA5S1215_0260 [Mycobacterium abscessus
5S-1215]
gi|392124509|gb|EIU50268.1| hypothetical protein MA6G0125S_0504 [Mycobacterium abscessus
6G-0125-S]
gi|392135393|gb|EIU61133.1| hypothetical protein MA6G0728S_0137 [Mycobacterium abscessus
6G-0728-S]
gi|392140975|gb|EIU66701.1| hypothetical protein MA6G1108_0493 [Mycobacterium abscessus
6G-1108]
gi|392173611|gb|EIU99278.1| hypothetical protein MA6G0212_0562 [Mycobacterium abscessus
6G-0212]
gi|392176094|gb|EIV01755.1| hypothetical protein MA5S0921_0448 [Mycobacterium abscessus
5S-0921]
gi|392176843|gb|EIV02501.1| hypothetical protein MA6G0728R_0496 [Mycobacterium abscessus
6G-0728-R]
gi|392204488|gb|EIV30076.1| hypothetical protein MA3A0119R_0591 [Mycobacterium abscessus
3A-0119-R]
gi|392208246|gb|EIV33823.1| hypothetical protein MA3A0122S_3848 [Mycobacterium abscessus
3A-0122-S]
gi|392213231|gb|EIV38790.1| hypothetical protein MA3A0731_2557 [Mycobacterium abscessus
3A-0731]
gi|392213521|gb|EIV39077.1| hypothetical protein MA3A0122R_0651 [Mycobacterium abscessus
3A-0122-R]
gi|392217703|gb|EIV43237.1| hypothetical protein MA3A0731_0495 [Mycobacterium abscessus
3A-0731]
gi|392227729|gb|EIV53242.1| hypothetical protein MA3A0930S_2425 [Mycobacterium abscessus
3A-0930-S]
gi|392233105|gb|EIV58604.1| hypothetical protein MA3A0930R_0600 [Mycobacterium abscessus
3A-0930-R]
gi|392243930|gb|EIV69413.1| hypothetical protein MMCCUG48898_0354 [Mycobacterium massiliense
CCUG 48898]
gi|392258394|gb|EIV83840.1| hypothetical protein MM3A0810R_0594 [Mycobacterium abscessus
3A-0810-R]
Length = 315
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L ALYV ++ ++N D++ E V +A + GI+I E
Sbjct: 74 EMVLGRNPVLECLRTGV-PATALYV----AVGADN----DERLTESV-ALAADAGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + E Q +L VALD ++DP+NLGA
Sbjct: 124 VPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVV+ + SA ++ V + S+G+ + + N+ + L + G +
Sbjct: 184 IVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGITI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ + +V+GSEG GL LV ++C +V IP P
Sbjct: 244 VGLDAGGD-TELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGP--------- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 294 -------------------VESLNASVAAGVVLAEI 310
>gi|308171987|ref|YP_003918692.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|384157709|ref|YP_005539782.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
gi|384162503|ref|YP_005543882.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
gi|384166725|ref|YP_005548103.1| hypothetical protein BAXH7_00103 [Bacillus amyloliquefaciens XH7]
gi|307604851|emb|CBI41222.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens DSM 7]
gi|328551797|gb|AEB22289.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens TA208]
gi|328910058|gb|AEB61654.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens LL3]
gi|341826004|gb|AEK87255.1| hypothetical protein BAXH7_00103 [Bacillus amyloliquefaciens XH7]
Length = 249
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ GI+I+ + L+ +V + HQG+V + E ++ EL + + ++
Sbjct: 39 QQVIELAKKQGITIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEERNEQP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 98 FFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 158 NLARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 217 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|212716506|ref|ZP_03324634.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660587|gb|EEB21162.1| hypothetical protein BIFCAT_01432 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 333
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL------------ 384
+++++A G+++ E + +++ + + HQG+V+ A P + + EL
Sbjct: 103 EIIRLAGIHGLNLMEADRLEMDRIARSSNHQGVVMKAQPFQYSSLAELVERADKKSRAME 162
Query: 385 --DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
+ SA L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 AANSTSARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + S E G+ +G A+ P ++VLGSEG G
Sbjct: 223 AGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP S M VESLN SVAAG+
Sbjct: 283 LSRLVRETCDSIAGIP---------------------------MSNM-VESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 TLY 317
>gi|400975276|ref|ZP_10802507.1| tRNA/rRNA methyltransferase [Salinibacterium sp. PAMC 21357]
Length = 344
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 11/189 (5%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKEL-DPISADEDQ 393
+++LK+A +++ E + +L+ + G + HQG L P E EL D + A Q
Sbjct: 129 KEILKLATARNLAVLEVMRPELDRLAGFDSVHQGFALKVPPYEYAHPMELLDKVEA-RGQ 187
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
L VALD +TDP+NLGAI+RS FG GV++ + S ++ K S+G+ +
Sbjct: 188 VPLLVALDGITDPRNLGAIVRSVAAFGGQGVIVPQRRSVGMTASAWKTSAGAAARTPVAM 247
Query: 454 CNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
NN+ Q + + G VLG G VS ++PL + +P ++V+GSEG GL LV
Sbjct: 248 ANNLTQMIKEYKKRGVFVLGLDGDGDVSLPSLPLAK----EPVLIVVGSEGKGLSRLVTE 303
Query: 510 SCTHLVRIP 518
+C +V IP
Sbjct: 304 NCDAIVSIP 312
>gi|385650980|ref|ZP_10045533.1| tRNA/rRNA methyltransferase protein [Leucobacter chromiiresistens
JG 31]
Length = 332
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 19/232 (8%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G VL AL AK LY+ + + R+ +L++A N G+++ E
Sbjct: 84 ELVTGRNAVLEALRAKI-PATTLYIAARVEMDDRMRE---------ILRIATNRGLAVLE 133
Query: 352 TSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
+ +++ MV + HQG+VL PLE E+ + L+VALD VTDP+NLG
Sbjct: 134 IMRPEMDRMVERDTVHQGVVLKVPPLEHAHPMEVLDEVIGRGEMPLFVALDGVTDPRNLG 193
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AIIRS FG V++ + SA L+ K S+G+ + + +N+ Q L + G
Sbjct: 194 AIIRSVAAFGGQAVIVPQRRSASLNSAAWKTSAGAAARVPVAMASNLTQTLKEFKKQGVF 253
Query: 471 VLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
V+G G VS + L + +P ++V+GSEG GL LV +C +V IP
Sbjct: 254 VVGLDGDGDVSLPGLELAD----RPVVVVVGSEGKGLSRLVTETCDAVVSIP 301
>gi|366163861|ref|ZP_09463616.1| RNA methyltransferase [Acetivibrio cellulolyticus CD2]
Length = 319
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 2/191 (1%)
Query: 329 KKDKKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K DK+G ++++ +A GI ++ET + L+ + HQG++ + + V++ ++ I
Sbjct: 103 KGDKEGSIKQIIALAREKGIIVQETDRVSLDKISTTHSHQGVIAFVAVKDYVEVDDILEI 162
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ + +A + LD +TDP NLG+I+R+A GA GVV+ + + L+ VSKAS+G++E
Sbjct: 163 AQSKGEAPFIIILDGITDPHNLGSILRTANAVGAHGVVIPKRRAIGLTAAVSKASAGAIE 222
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+ + N+ Q + E V+G S + EI P LV+GSEG G+ LV
Sbjct: 223 YVPVARVTNIAQTIDYLKEQNLWVVGTDQSGEK-SFYEIDLKGPIALVIGSEGEGMGKLV 281
Query: 508 ERSCTHLVRIP 518
C +V +P
Sbjct: 282 SEKCDFVVNLP 292
>gi|295838035|ref|ZP_06824968.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
gi|197699163|gb|EDY46096.1| TrmH family RNA methyltransferase [Streptomyces sp. SPB74]
Length = 315
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 80/254 (31%), Positives = 122/254 (48%), Gaps = 38/254 (14%)
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVL 371
ALYVQ+ N+ + +D LK+A + G I + E + +L+ + HQGLVL
Sbjct: 90 ALYVQQ---FIDNDERVRD------ALKLAADRGGIHLMEAPRPELDRMTNGLNHQGLVL 140
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
P E ++L + DE L VALD VTDP+NLGAI+RS FG GVV+ + +
Sbjct: 141 QVPPYEYAHPEDLPAAAYDEGGEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRA 200
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K+S+G+ + N+ + L + + G V+G + + P
Sbjct: 201 AGMTAGAWKSSAGTAARTPVARVTNLTRALEAYKKAGITVVGLAADGEHTVGELAALDGP 260
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++V+GSEG GL LV +C + V IP +P G A
Sbjct: 261 VVIVIGSEGKGLSRLVGETCDYRVSIP--MP-----------------GGA--------- 292
Query: 552 ESLNVSVAAGVLLH 565
ESLN VAAG++++
Sbjct: 293 ESLNAGVAAGIVMY 306
>gi|333895248|ref|YP_004469123.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
gi|332995266|gb|AEF05321.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas sp. SN2]
Length = 245
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 81/277 (29%), Positives = 130/277 (46%), Gaps = 40/277 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + + L + + V +G ++ + ++ A GIS++
Sbjct: 5 EWLYGLHAMQSVLEQEPERVMEVMVLKG----------RNDERLTNIVNQARRFGISVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ V HQG+V A P ++ +LD I D++ L + LD +TDP NLGA
Sbjct: 55 CQRKALDDKVNGEQHQGVVARAKPARVMDEADLDRI-LDKESKPLLLVLDGITDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G VV+ SA L+G V K + G+ E++ L N+ + L + G +
Sbjct: 114 CLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEVIPLIQVTNLARTLKHLQDKGLWI 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + + L +I PT LV+G+EG G+R L + +C LV++P AG
Sbjct: 174 VGTAGETDKT-LYDIKLDGPTALVMGAEGKGMRRLTKETCDELVKLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L+ +V
Sbjct: 223 ------------------SVSSLNVSVATGVCLYEIV 241
>gi|225351596|ref|ZP_03742619.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
gi|225157940|gb|EEG71223.1| hypothetical protein BIFPSEUDO_03193 [Bifidobacterium
pseudocatenulatum DSM 20438 = JCM 1200]
Length = 333
Score = 104 bits (259), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 117/243 (48%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL------------ 384
+++++A G+++ E + +++ + + HQG+V+ A P + + EL
Sbjct: 103 EIIRLAGIHGLNLMEADRLEMDRIARSSNHQGVVMKAQPFQYSSLAELVERADKKSRAME 162
Query: 385 --DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
+ SA L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 AANSASARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + S E G+ +G A+ P ++VLGSEG G
Sbjct: 223 AGAAAHMPVARVVNLTKAIESLKERGYYSVGLDGGGDALVGETGFETDPLVVVLGSEGNG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP S M VESLN SVAAG+
Sbjct: 283 LSRLVRETCDSIAGIP---------------------------MSNM-VESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 TLY 317
>gi|375085592|ref|ZP_09732225.1| RNA methyltransferase, TrmH family, group 3 [Megamonas funiformis
YIT 11815]
gi|374567197|gb|EHR38427.1| RNA methyltransferase, TrmH family, group 3 [Megamonas funiformis
YIT 11815]
Length = 284
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/182 (30%), Positives = 103/182 (56%), Gaps = 1/182 (0%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++ +A I ++ + L+ + G + HQG+ A+P++ V++ ++ ++ + ++
Sbjct: 76 EIMTLARERRIIVQNVNTEKLDQICGGQRHQGIAAYAAPVDYVELDDILNLAKERNEDPF 135
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LDE+ DP NLGAI+R+A GA G+++ S PLS +V+K S+G+LE + + N
Sbjct: 136 IILLDELEDPHNLGAILRTADAVGAHGILIPKHRSCPLSSIVAKTSAGALEYVPVARIGN 195
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
++Q L + G V G + + G P +LV+GSEG G+ L + +C +V+
Sbjct: 196 VVQTLEELKQKGLWVAGADMDGTENYYDANMTG-PLVLVIGSEGRGVSRLTKNACDFIVK 254
Query: 517 IP 518
IP
Sbjct: 255 IP 256
>gi|374610119|ref|ZP_09682912.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium tusciae
JS617]
gi|373551150|gb|EHP77779.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium tusciae
JS617]
Length = 313
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 127/276 (46%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D++ E V + A+ GI I E
Sbjct: 71 ELVLGRNPVVECLRAGV-PAAALYVALG--------ADSDERLTESVTRAADT-GIPILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K DL+ + N HQG+ L P + ++ + + ++ VALD +TDP+NLGA
Sbjct: 121 VPKPDLDRMSTNGLHQGIALQVPPYDYAHPDDMLKSATTDVSPAMLVALDNITDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L G +V
Sbjct: 181 IVRSVSAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKDWGNAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDARGD-ITIDELDGEGPILVVVGSEGKGLSRLVRENCDAIVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 291 -------------------TESLNASVAAGVVLAEI 307
>gi|344997048|ref|YP_004799391.1| TrmH family RNA methyltransferase [Caldicellulosiruptor
lactoaceticus 6A]
gi|343965267|gb|AEM74414.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
lactoaceticus 6A]
Length = 253
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 294 LYGVGPVLAAL--SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ G PV AL AK E Y +S S+ +R+ +++ + + GI +K
Sbjct: 4 IEGKNPVKEALRSGAKITEVY-------ISNSAKDRETA------QIINLCKQSGIVVKF 50
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K ++ + + QG++ A E I ++ + + V LD +TDPQN G+
Sbjct: 51 VDKSKIDKMAQTKNPQGVIAIAHEFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGS 110
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA+ GA G+V+ A+NS P++ V KAS+G++E M++ N+ + + E G V
Sbjct: 111 IIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWV 170
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S P+ E PT +V+GSEG G+ LV+ L++IP
Sbjct: 171 FATDASGPK-PVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIP 216
>gi|308235518|ref|ZP_07666255.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
ATCC 14018 = JCM 11026]
Length = 331
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 93 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 151
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D +A + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 152 DRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 212 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 271
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 272 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 303
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 304 ESLNASVAAGISLY 317
>gi|312792760|ref|YP_004025683.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kristjanssonii 177R1B]
gi|312179900|gb|ADQ40070.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kristjanssonii 177R1B]
Length = 253
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/227 (30%), Positives = 114/227 (50%), Gaps = 16/227 (7%)
Query: 294 LYGVGPVLAAL--SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
+ G PV AL AK E Y +S S+ +R+ +++ + + GI +K
Sbjct: 4 IEGKNPVKEALRSGAKITEVY-------ISNSAKDRETA------QIINLCKQSGIVVKF 50
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K ++ + + QG++ A E I ++ + + V LD +TDPQN G+
Sbjct: 51 VDKSKIDKMAQTKNPQGVIAIAREFEYCDIDDILAEARQRGETPFLVLLDGITDPQNFGS 110
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRSA+ GA G+V+ A+NS P++ V KAS+G++E M++ N+ + + E G V
Sbjct: 111 IIRSAHLCGAHGIVIEARNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWV 170
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S P+ E PT +V+GSEG G+ LV+ L++IP
Sbjct: 171 FATDASGPK-PVYECDFTIPTCIVIGSEGKGISRLVKEGADFLIKIP 216
>gi|389573531|ref|ZP_10163605.1| RNA methyltransferase, TrmH family, group 3 [Bacillus sp. M 2-6]
gi|388426846|gb|EIL84657.1| RNA methyltransferase, TrmH family, group 3 [Bacillus sp. M 2-6]
Length = 249
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 42/260 (16%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN-MVVGNRPHQ 367
RE Y L++ E N K + ++V+++A+ I+I+ + L+ MV G HQ
Sbjct: 22 RELYKLWMAE------NTVKGQA----QQVIELAKKQNITIQYVPRKKLDQMVTGQ--HQ 69
Query: 368 GLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
G+V + E ++ +L I+ ++ ++ LDE+ DP NLG+I+R+A GA G+V+
Sbjct: 70 GIVAQVAAYEYAELDDLYQIAEKRNEQPFFIILDEIEDPHNLGSIMRTADAVGAHGIVIP 129
Query: 428 AKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP 487
+ + L+ V+KAS+G++E + + N+ + L E G V G S+K +
Sbjct: 130 KRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDASAKQ-DYRQFD 188
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQS 547
P LV+GSEG G+ L++ C L+++P AG+
Sbjct: 189 GTMPLALVIGSEGKGIGRLIKEKCDFLIKLP-------MAGQ------------------ 223
Query: 548 FMAVESLNVSVAAGVLLHHL 567
V SLN SVAA +L++ +
Sbjct: 224 ---VTSLNASVAASLLMYEV 240
>gi|15642593|ref|NP_232226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae O1
biovar El Tor str. N16961]
gi|153824008|ref|ZP_01976675.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|227082715|ref|YP_002811266.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
M66-2]
gi|229507350|ref|ZP_04396855.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
BX 330286]
gi|229509727|ref|ZP_04399208.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
B33]
gi|229516851|ref|ZP_04406297.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC9]
gi|229606856|ref|YP_002877504.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
MJ-1236]
gi|254292176|ref|ZP_04962946.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|254851138|ref|ZP_05240488.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
MO10]
gi|255744433|ref|ZP_05418385.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
CIRS 101]
gi|262158453|ref|ZP_06029568.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
INDRE 91/1]
gi|298500578|ref|ZP_07010382.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
757]
gi|360036468|ref|YP_004938231.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 str.
2010EL-1786]
gi|379742377|ref|YP_005334346.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
IEC224]
gi|417814608|ref|ZP_12461260.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-49A2]
gi|417818345|ref|ZP_12464972.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HCUF01]
gi|418339002|ref|ZP_12947895.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-23A1]
gi|418347124|ref|ZP_12951876.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-28A1]
gi|418350880|ref|ZP_12955610.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-43A1]
gi|418356373|ref|ZP_12959091.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-61A1]
gi|419827532|ref|ZP_14351030.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae CP1033(6)]
gi|421318580|ref|ZP_15769147.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1032(5)]
gi|421322338|ref|ZP_15772889.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1038(11)]
gi|421326135|ref|ZP_15776658.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1041(14)]
gi|421329794|ref|ZP_15780303.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1042(15)]
gi|421333750|ref|ZP_15784226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1046(19)]
gi|421337292|ref|ZP_15787752.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1048(21)]
gi|421340717|ref|ZP_15791148.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-20A2]
gi|421348497|ref|ZP_15798873.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-46A1]
gi|421352294|ref|ZP_15802658.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-25]
gi|422897682|ref|ZP_16935118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-40A1]
gi|422903885|ref|ZP_16938844.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-48A1]
gi|422907763|ref|ZP_16942555.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-70A1]
gi|422914603|ref|ZP_16949106.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HFU-02]
gi|422926808|ref|ZP_16959818.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-38A1]
gi|423146129|ref|ZP_17133721.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-19A1]
gi|423150832|ref|ZP_17138118.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-21A1]
gi|423154641|ref|ZP_17141804.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-22A1]
gi|423157708|ref|ZP_17144799.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-32A1]
gi|423161278|ref|ZP_17148215.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-33A2]
gi|423166113|ref|ZP_17152827.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-48B2]
gi|423732140|ref|ZP_17705440.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-17A1]
gi|423772707|ref|ZP_17713702.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-50A2]
gi|423897188|ref|ZP_17727747.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-62A1]
gi|423932406|ref|ZP_17732141.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-77A1]
gi|424003555|ref|ZP_17746628.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-17A2]
gi|424007349|ref|ZP_17750317.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-37A1]
gi|424025329|ref|ZP_17764977.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-62B1]
gi|424028215|ref|ZP_17767815.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-69A1]
gi|424587495|ref|ZP_18027072.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1030(3)]
gi|424596150|ref|ZP_18035467.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1040(13)]
gi|424600059|ref|ZP_18039236.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio Cholerae
CP1044(17)]
gi|424602818|ref|ZP_18041956.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1047(20)]
gi|424607755|ref|ZP_18046694.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1050(23)]
gi|424611571|ref|ZP_18050408.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-39A1]
gi|424614399|ref|ZP_18053182.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-41A1]
gi|424618367|ref|ZP_18057036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-42A1]
gi|424623152|ref|ZP_18061654.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-47A1]
gi|424646113|ref|ZP_18083846.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-56A2]
gi|424653880|ref|ZP_18091258.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-57A2]
gi|424657697|ref|ZP_18094980.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-81A2]
gi|440710815|ref|ZP_20891462.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
4260B]
gi|443504928|ref|ZP_21071879.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-64A1]
gi|443508835|ref|ZP_21075589.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-65A1]
gi|443512673|ref|ZP_21079305.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-67A1]
gi|443516232|ref|ZP_21082736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-68A1]
gi|443520025|ref|ZP_21086411.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-71A1]
gi|443524918|ref|ZP_21091119.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-72A2]
gi|443532498|ref|ZP_21098511.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-7A1]
gi|443536314|ref|ZP_21102179.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-80A1]
gi|443539845|ref|ZP_21105697.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-81A1]
gi|449054972|ref|ZP_21733640.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
O1 str. Inaba G4222]
gi|52783330|sp|Q9KNY2.1|RLMB_VIBCH RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA (guanosine2251
2'-O)-methyltransferase; AltName: Full=23S rRNA Gm2251
2'-O-methyltransferase
gi|9657186|gb|AAF95739.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|126518472|gb|EAZ75695.1| RNA methyltransferase, TrmH family [Vibrio cholerae B33]
gi|150421905|gb|EDN13882.1| RNA methyltransferase, TrmH family [Vibrio cholerae AM-19226]
gi|227010603|gb|ACP06815.1| RNA methyltransferase, TrmH family [Vibrio cholerae M66-2]
gi|229345914|gb|EEO10886.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
RC9]
gi|229353201|gb|EEO18140.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
B33]
gi|229354855|gb|EEO19776.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
BX 330286]
gi|229369511|gb|ACQ59934.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
MJ-1236]
gi|254846843|gb|EET25257.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio cholerae
MO10]
gi|255737958|gb|EET93351.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholera
CIRS 101]
gi|262029614|gb|EEY48263.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
INDRE 91/1]
gi|297540747|gb|EFH76804.1| RNA methyltransferase, TrmH family, group 3 [Vibrio cholerae MAK
757]
gi|340035166|gb|EGQ96147.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HCUF01]
gi|340035418|gb|EGQ96398.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-49A2]
gi|341619220|gb|EGS45074.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-48A1]
gi|341619630|gb|EGS45433.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-70A1]
gi|341620090|gb|EGS45868.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-40A1]
gi|341635898|gb|EGS60603.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HFU-02]
gi|341645293|gb|EGS69441.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-38A1]
gi|356416766|gb|EHH70390.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-21A1]
gi|356421891|gb|EHH75379.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-19A1]
gi|356427386|gb|EHH80636.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-22A1]
gi|356429045|gb|EHH82264.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-28A1]
gi|356429295|gb|EHH82513.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-23A1]
gi|356438697|gb|EHH91701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-32A1]
gi|356443356|gb|EHH96178.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-33A2]
gi|356443772|gb|EHH96590.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-43A1]
gi|356448687|gb|EHI01449.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-48B2]
gi|356451587|gb|EHI04270.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-61A1]
gi|356647622|gb|AET27677.1| RNA methyltransferase, TrmH family [Vibrio cholerae O1 str.
2010EL-1786]
gi|378795887|gb|AFC59358.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio cholerae
IEC224]
gi|395915493|gb|EJH26327.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1032(5)]
gi|395915793|gb|EJH26625.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1041(14)]
gi|395916887|gb|EJH27716.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1038(11)]
gi|395926775|gb|EJH37544.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1042(15)]
gi|395927112|gb|EJH37876.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1046(19)]
gi|395930320|gb|EJH41068.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1048(21)]
gi|395938704|gb|EJH49391.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-20A2]
gi|395940861|gb|EJH51541.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-46A1]
gi|395949694|gb|EJH60314.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE-25]
gi|395957456|gb|EJH67998.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-56A2]
gi|395957904|gb|EJH68416.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-57A2]
gi|395960465|gb|EJH70833.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-42A1]
gi|395969967|gb|EJH79786.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-47A1]
gi|395971744|gb|EJH81376.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1030(3)]
gi|395974131|gb|EJH83667.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1047(20)]
gi|408006008|gb|EKG44188.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-39A1]
gi|408010438|gb|EKG48297.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-41A1]
gi|408030304|gb|EKG66971.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1040(13)]
gi|408040348|gb|EKG76534.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio Cholerae
CP1044(17)]
gi|408041725|gb|EKG77824.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
CP1050(23)]
gi|408051665|gb|EKG86746.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-81A2]
gi|408606952|gb|EKK80365.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae CP1033(6)]
gi|408622082|gb|EKK95071.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-17A1]
gi|408632674|gb|EKL05114.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-50A2]
gi|408653235|gb|EKL24408.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-77A1]
gi|408653841|gb|EKL24990.1| RNA 2'-O ribose methyltransferase substrate binding family protein
[Vibrio cholerae HC-62A1]
gi|408844090|gb|EKL84226.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-37A1]
gi|408844659|gb|EKL84783.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-17A2]
gi|408869312|gb|EKM08611.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-62B1]
gi|408878069|gb|EKM17083.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-69A1]
gi|439973548|gb|ELP49761.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio cholerae
4260B]
gi|443430651|gb|ELS73210.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-64A1]
gi|443434484|gb|ELS80637.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-65A1]
gi|443438315|gb|ELS88036.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-67A1]
gi|443442439|gb|ELS95748.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-68A1]
gi|443446269|gb|ELT02935.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-71A1]
gi|443448950|gb|ELT09253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-72A2]
gi|443456672|gb|ELT24070.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-7A1]
gi|443460456|gb|ELT31542.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-80A1]
gi|443464529|gb|ELT39191.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-81A1]
gi|448265590|gb|EMB02824.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio cholerae
O1 str. Inaba G4222]
Length = 247
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 130/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>gi|182678319|ref|YP_001832465.1| RNA methyltransferase [Beijerinckia indica subsp. indica ATCC 9039]
gi|182634202|gb|ACB94976.1| RNA methyltransferase, TrmH family, group 3 [Beijerinckia indica
subsp. indica ATCC 9039]
Length = 293
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 78/270 (28%), Positives = 138/270 (51%), Gaps = 34/270 (12%)
Query: 256 KARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALY 315
++R +P+ ++++N + +++++P + L+G V AL + R ALY
Sbjct: 35 ESRPHRPKSAPASQEKNP--SPFRQSSPDVI------LLHGFHAVREALRSDQRTCLALY 86
Query: 316 VQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLDAS 374
E + EK+ ++ G++ + DL+ +G++ HQG++L+A
Sbjct: 87 ATEAAA--------------EKLAPDSKAAGLAPHIVTAEDLSRRLGSQTVHQGVLLEAR 132
Query: 375 PLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPL 434
PLE + I E+ ++ + + LD++TDP N+GAI+R+A F +V +++ L
Sbjct: 133 PLEPLDITEI------PTRSGVVLVLDQITDPHNVGAIVRTAAAFDVDAIVTTERHAPAL 186
Query: 435 SGVVSKASSGSLELMELRYCNNMMQFLVSSAE-NGWRVLGGSVSSKAVPLNEIPPGQPTI 493
GV++KA+SG LE +++ N+ + L + N RV G S+ ++P +P
Sbjct: 187 GGVLAKAASGGLEHVQIVPVVNLARALETLGRLNYLRV--GLDSAAEADFTQLPLQRPIA 244
Query: 494 LVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG EGTGLR L C L R+ PG I
Sbjct: 245 LVLGGEGTGLRRLTREKCDFLARLDMPGKI 274
>gi|417103115|ref|ZP_11960973.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
CNPAF512]
gi|327191383|gb|EGE58409.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Rhizobium etli
CNPAF512]
Length = 296
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/284 (31%), Positives = 135/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYANLRRAHRDAKRERGEIPTPQPQKRKR--GAEDWK--PPALAPDQVY--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L V + ++ R + D E + I + + H+++ V
Sbjct: 73 RAALDNPERKKIKLSVTQ----NALARLEID----------VEALDIPFEIVAPHEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G S
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHKLGFSTIGLD-SEG 230
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL G LVLGSEG GLR + T L R+ PG I
Sbjct: 231 PAPLEGTFSGDKLALVLGSEGKGLRQKTRETVTALARLDMPGAI 274
>gi|209548917|ref|YP_002280834.1| TrmH family RNA methyltransferase [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209534673|gb|ACI54608.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium
leguminosarum bv. trifolii WSM2304]
Length = 296
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 135/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPQKRRR--GAEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D E +GI + S +++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEVD----------VETLGIPFEIVSPQEIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLGFSTIGLDSEGP 231
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
A L G+ LVLGSEG GLR + L R+ PG I
Sbjct: 232 AA-LEGTFSGEKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|397678532|ref|YP_006520067.1| tRNA/rRNA methyltransferase [Mycobacterium massiliense str. GO 06]
gi|418252082|ref|ZP_12878094.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus
47J26]
gi|420934716|ref|ZP_15397989.1| hypothetical protein MM1S1510930_5567 [Mycobacterium massiliense
1S-151-0930]
gi|420936473|ref|ZP_15399742.1| hypothetical protein MM1S1520914_0787 [Mycobacterium massiliense
1S-152-0914]
gi|420940024|ref|ZP_15403291.1| hypothetical protein MM1S1530915_0121 [Mycobacterium massiliense
1S-153-0915]
gi|420946145|ref|ZP_15409398.1| hypothetical protein MM1S1540310_0136 [Mycobacterium massiliense
1S-154-0310]
gi|420950221|ref|ZP_15413468.1| hypothetical protein MM2B0626_0427 [Mycobacterium massiliense
2B-0626]
gi|420959210|ref|ZP_15422444.1| hypothetical protein MM2B0107_4632 [Mycobacterium massiliense
2B-0107]
gi|420959526|ref|ZP_15422757.1| hypothetical protein MM2B1231_0487 [Mycobacterium massiliense
2B-1231]
gi|420995140|ref|ZP_15458286.1| hypothetical protein MM2B0307_4579 [Mycobacterium massiliense
2B-0307]
gi|420996193|ref|ZP_15459335.1| hypothetical protein MM2B0912R_0828 [Mycobacterium massiliense
2B-0912-R]
gi|421000624|ref|ZP_15463757.1| hypothetical protein MM2B0912S_0428 [Mycobacterium massiliense
2B-0912-S]
gi|353448342|gb|EHB96747.1| putative tRNA/rRNA methyltransferase [Mycobacterium abscessus
47J26]
gi|392133128|gb|EIU58873.1| hypothetical protein MM1S1510930_5567 [Mycobacterium massiliense
1S-151-0930]
gi|392141988|gb|EIU67713.1| hypothetical protein MM1S1520914_0787 [Mycobacterium massiliense
1S-152-0914]
gi|392156886|gb|EIU82584.1| hypothetical protein MM1S1530915_0121 [Mycobacterium massiliense
1S-153-0915]
gi|392159353|gb|EIU85049.1| hypothetical protein MM1S1540310_0136 [Mycobacterium massiliense
1S-154-0310]
gi|392165307|gb|EIU90994.1| hypothetical protein MM2B0626_0427 [Mycobacterium massiliense
2B-0626]
gi|392181242|gb|EIV06894.1| hypothetical protein MM2B0307_4579 [Mycobacterium massiliense
2B-0307]
gi|392190962|gb|EIV16589.1| hypothetical protein MM2B0912R_0828 [Mycobacterium massiliense
2B-0912-R]
gi|392202778|gb|EIV28374.1| hypothetical protein MM2B0912S_0428 [Mycobacterium massiliense
2B-0912-S]
gi|392248936|gb|EIV74412.1| hypothetical protein MM2B0107_4632 [Mycobacterium massiliense
2B-0107]
gi|392256738|gb|EIV82192.1| hypothetical protein MM2B1231_0487 [Mycobacterium massiliense
2B-1231]
gi|395456797|gb|AFN62460.1| putative tRNA/rRNA methyltransferase [Mycobacterium massiliense
str. GO 06]
Length = 315
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L ALYV ++ ++N D++ E V +A + GI+I E
Sbjct: 74 EMVLGRNPVLECLRTGV-PATALYV----AVGADN----DERLTESV-ALAADAGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + E Q +L VALD ++DP+NLGA
Sbjct: 124 VPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVV+ + SA ++ V + S+G+ + + N+ + L + G +
Sbjct: 184 IVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGITI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ + +V+GSEG GL LV ++C +V IP P
Sbjct: 244 VGLDAGGD-TELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGP--------- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 294 -------------------VESLNASVAAGVVLAEI 310
>gi|399526946|ref|ZP_10766681.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. ICM39]
gi|398362514|gb|EJN46208.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. ICM39]
Length = 325
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A MG + E ++ DL++ HQG+ ++ E +L S
Sbjct: 110 KDDR-VEEVVRLASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGSL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVE 508
+ N+++ L + + G+ V+G A PL + P ++V G+EG GL LV
Sbjct: 229 PVARATNLVRALEEAKQAGYFVVGLDGGGDA-PLRGLSLADGPLVVVTGAEGAGLSRLVR 287
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP +T+ VESLN +VA G+ L+ +
Sbjct: 288 ETCDQIVSIP------ITS----------------------TVESLNAAVATGIALYEV 318
>gi|334338067|ref|YP_004543219.1| TrmH family RNA methyltransferase [Isoptericola variabilis 225]
gi|334108435|gb|AEG45325.1| RNA methyltransferase, TrmH family, group 3 [Isoptericola
variabilis 225]
Length = 332
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 117/232 (50%), Gaps = 30/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++A G+ + E S+ +L+ + HQG+ P E +++L + + Q L
Sbjct: 120 EILELASTRGVQLLEVSRTELDHLTEGSVHQGVAAQVPPYEYADVEDLLDAADEAGQPPL 179
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD VTDP+NLGA++RSA FGA GV++ ++ SA ++ K S+G+ + + N
Sbjct: 180 LVALDGVTDPRNLGAVLRSAGAFGAHGVIVPSRRSAGVTASAWKTSAGAAARVPVARVTN 239
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLV 515
+ + L ++G V+G + ++E+ P +LV+GSEG GL LV +C +
Sbjct: 240 LSRTLTELKKSGLFVVGLDAGGDS-EVHELAFATDPVVLVVGSEGKGLSRLVRETCDAVA 298
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
IP + +D VESLN VAAG+ L+ +
Sbjct: 299 SIP--------------ISSD--------------VESLNAGVAAGITLYEV 322
>gi|295394485|ref|ZP_06804708.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
gi|294972664|gb|EFG48516.1| RNA methyltransferase [Brevibacterium mcbrellneri ATCC 49030]
Length = 306
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/231 (30%), Positives = 113/231 (48%), Gaps = 30/231 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+++ A + GI + E K DL+ + HQG+ L P E +L ++ D + L
Sbjct: 99 IIEAASDRGIPMLEAGKPDLDRITDGAIHQGVALQVPPYEYAHPDDLLSLARDRAEHPLL 158
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
VALD +TDP+NLGAI+RS FG GV++ + +A ++ K S+G+ + + N+
Sbjct: 159 VALDGITDPRNLGAIVRSTAAFGGHGVIITERRAASMTAAAWKTSAGAASRIPVAQVVNL 218
Query: 458 MQFLVSSAENGWRVLGGSVSSKA-VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + ++G VLG ++ +P E+ +P LV+GSEG GL LV C +V
Sbjct: 219 ARAIDDLKKSGVFVLGLDMNGDVELPKLELAR-EPVCLVVGSEGKGLSRLVRDKCDQIVS 277
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
IP ++A + ESLN VAAGV L+ +
Sbjct: 278 IP------ISA----------------------STESLNAGVAAGVALYEV 300
>gi|311114079|ref|YP_003985300.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
gi|310945573|gb|ADP38277.1| RNA methyltransferase [Gardnerella vaginalis ATCC 14019]
Length = 360
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 122 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 180
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D +A + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 181 DRAEKKSRAMEAADSSAARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 240
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 241 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 300
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 301 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 332
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 333 ESLNASVAAGISLY 346
>gi|420862359|ref|ZP_15325755.1| hypothetical protein MA4S0303_0699 [Mycobacterium abscessus
4S-0303]
gi|420866944|ref|ZP_15330331.1| hypothetical protein MA4S0726RA_0424 [Mycobacterium abscessus
4S-0726-RA]
gi|420871393|ref|ZP_15334773.1| hypothetical protein MA4S0726RB_0014 [Mycobacterium abscessus
4S-0726-RB]
gi|420989317|ref|ZP_15452473.1| hypothetical protein MA4S0206_2151 [Mycobacterium abscessus
4S-0206]
gi|421038405|ref|ZP_15501416.1| hypothetical protein MA4S0116R_0690 [Mycobacterium abscessus
4S-0116-R]
gi|421046594|ref|ZP_15509594.1| hypothetical protein MA4S0116S_4459 [Mycobacterium abscessus
4S-0116-S]
gi|392075275|gb|EIU01109.1| hypothetical protein MA4S0726RA_0424 [Mycobacterium abscessus
4S-0726-RA]
gi|392075582|gb|EIU01415.1| hypothetical protein MA4S0726RB_0014 [Mycobacterium abscessus
4S-0726-RB]
gi|392077520|gb|EIU03351.1| hypothetical protein MA4S0303_0699 [Mycobacterium abscessus
4S-0303]
gi|392183596|gb|EIV09247.1| hypothetical protein MA4S0206_2151 [Mycobacterium abscessus
4S-0206]
gi|392226619|gb|EIV52133.1| hypothetical protein MA4S0116R_0690 [Mycobacterium abscessus
4S-0116-R]
gi|392236047|gb|EIV61545.1| hypothetical protein MA4S0116S_4459 [Mycobacterium abscessus
4S-0116-S]
Length = 315
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L ALYV ++ ++N D++ E V +A + GI+I E
Sbjct: 74 EMVLGRNPVLECLRTGV-PATALYV----AVGADN----DERLTESV-ALAADAGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + E Q +L VALD ++DP+NLGA
Sbjct: 124 VPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVV+ + SA ++ V + S+G+ + + N+ + L + G +
Sbjct: 184 IVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGITI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ + +V+GSEG GL LV ++C +V IP P
Sbjct: 244 VGLDAGGDR-ELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGP--------- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 294 -------------------VESLNASVAAGVVLAEI 310
>gi|84498462|ref|ZP_00997232.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
gi|84381205|gb|EAP97089.1| putative tRNA/rRNA methyltransferase [Janibacter sp. HTCC2649]
Length = 316
Score = 103 bits (258), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 32/232 (13%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+ LK+A + I ET + +L+ + HQGL L P E +L I + L
Sbjct: 109 EALKIATERSLPILETPRGELDRITDGAVHQGLALQVPPYEYAHPNDL--IDPELPGIPL 166
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGAI+RS FG GVV+ A+ S ++ K S+G+ + + C N
Sbjct: 167 IVALDGITDPRNLGAIVRSVAAFGGHGVVVPARRSVGMTASAWKTSAGAAARIPVAQCTN 226
Query: 457 MMQFLVSSAENGWRVLGGSVSSKA-VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
+ + L + G+ V+G + +P E+ +P ++V+GSEG GL LV +C +V
Sbjct: 227 LTRTLEDYRKAGFFVIGLDMEGDVELPDLEL-ANEPIVIVVGSEGKGLSRLVRETCDQIV 285
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+P + AVESLN +A GV L+ +
Sbjct: 286 SVPMS----------------------------SAVESLNAGIATGVTLYEV 309
>gi|94265268|ref|ZP_01289027.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
gi|93454249|gb|EAT04565.1| RNA methyltransferase TrmH, group 3 [delta proteobacterium MLMS-1]
Length = 302
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 94/327 (28%), Positives = 141/327 (43%), Gaps = 71/327 (21%)
Query: 248 RNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAK 307
+ ++ V +R E QRW + W G+ PV L +
Sbjct: 21 KPGMKKKVVSRKE--SGQRWPADQPEASLVW-----------------GIHPVTELLRRR 61
Query: 308 TREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQ 367
LY+ G +D ++++A + I + + L PHQ
Sbjct: 62 PGLVRKLYLAGG----------RDDGRVAAIVELAASHRIPL---DRAGLPPAAAELPHQ 108
Query: 368 GL---VLDASPLEMV----KIKELDPISADEDQAS---LWVALDEVTDPQNLGAIIRSAY 417
G+ V SPL + ++ L P A A L + LD + DP NLGA++RSA
Sbjct: 109 GVAARVAPPSPLSLAELLQRLPALGPAPASSPAAGPPPLLLVLDSLQDPHNLGAVLRSAA 168
Query: 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVS 477
FG GV+L SAPLSG V KA++G+ L+++ N+ L + ++G+ + G S
Sbjct: 169 AFGVDGVILPKDRSAPLSGTVLKAAAGTAALLDICRTTNLAGALGTLKKHGFWIYGASGE 228
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+ L E PT LVLG+E G+RPL+++ C L+ IP + AG
Sbjct: 229 ASGN-LYETDFTGPTCLVLGNEQKGIRPLLKKHCDFLLAIP------LAAG--------- 272
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLNVSVAAG++L
Sbjct: 273 -------------VESLNVSVAAGIML 286
>gi|427730275|ref|YP_007076512.1| rRNA methylase [Nostoc sp. PCC 7524]
gi|427366194|gb|AFY48915.1| rRNA methylase, putative, group 3 [Nostoc sp. PCC 7524]
Length = 320
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/306 (28%), Positives = 140/306 (45%), Gaps = 54/306 (17%)
Query: 281 AAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
A P P + +YG PVL+AL + R +++ +R + D + + VL+
Sbjct: 56 APPLPTPTEDNDIIYGRHPVLSALENQ-RNLNRIWI--------TSRLRYDPRFHNLVLR 106
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA-----S 395
EN G I E L+ + HQG+ +P +++ EL DQA
Sbjct: 107 AKEN-GTVIDEVEPKRLDQITDQANHQGIAAQIAPYSYIELHELI------DQAKSVTDP 159
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
+ V D +TDP NLGAIIR+A GA G+V+ + ++ ++ V K ++G+LE +
Sbjct: 160 VIVVADGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFPVARVV 219
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G+ + G+ + + P++ + P +LV+GSEG GL L +RSC LV
Sbjct: 220 NLSRALEELKEAGFWIY-GTAADGSEPIHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVLV 278
Query: 516 RIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
IP G P SLN SVA+G+ L+ + +
Sbjct: 279 SIPLLGKTP------------------------------SLNASVASGMALYEIFRQRAV 308
Query: 574 NNSHIE 579
N +++
Sbjct: 309 NTLYLD 314
>gi|385267123|ref|ZP_10045210.1| SpoU rRNA Methylase family protein [Bacillus sp. 5B6]
gi|385151619|gb|EIF15556.1| SpoU rRNA Methylase family protein [Bacillus sp. 5B6]
Length = 249
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ G++I+ + L+ +V + HQG+V + E ++ EL + + ++
Sbjct: 39 QQVMELAKKRGVTIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEERNEQP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 98 FFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTATVAKASTGAIEHIPVVKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 158 NLARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 217 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|451940550|ref|YP_007461188.1| tRNA/rRNA methyltransferase [Bartonella australis Aust/NH1]
gi|451899937|gb|AGF74400.1| tRNA/rRNA methyltransferase [Bartonella australis Aust/NH1]
Length = 279
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 123/232 (53%), Gaps = 27/232 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
LYG+ V AAL R ALY+ + N K+ L + E ++ +K+
Sbjct: 49 LYGIHSVNAALKNPNRILKALYI------TPNALKR---------LNIVESDLPCPVKQC 93
Query: 353 SKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S L+++VG+ HQG+VL+ PL+ ++ EL +L V +D++TDP N+GA
Sbjct: 94 SPKQLDILVGSGAVHQGIVLETEPLKPRRLSELT-------NTNLVVIMDQITDPHNVGA 146
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA F A ++ ++S SGV++KA+SG+LEL++ N+ + L +E G+
Sbjct: 147 IMRSAIAFKAGALIATNRHSPRESGVLAKAASGALELIDYIIVQNLSEALQELSEVGFTS 206
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
G S + L + G+ L+LG+EG GLR ++ LV IPG+I
Sbjct: 207 FGLD-SEAQLSLEKTLTGEKIALILGAEGRGLRQKTRKTVHALVHLDIPGDI 257
>gi|408679688|ref|YP_006879515.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
gi|328884017|emb|CCA57256.1| rRNA methylases [Streptomyces venezuelae ATCC 10712]
Length = 319
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 89/277 (32%), Positives = 129/277 (46%), Gaps = 43/277 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIK 350
E + G PV AL LYVQ+ N+ + ++ L +A G I I
Sbjct: 74 EMVVGRNPVFEALRDGV-PASTLYVQQ---FIDNDERVRE------ALNLATGRGNIHIM 123
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
E + +L+ + HQGLVL P E ++L + D+ L VALD VTDP+NLG
Sbjct: 124 EAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLVTAAFDDHDDPLIVALDGVTDPRNLG 183
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A++RS FG GVV+ + +A ++ K S+G+ + N+ + L + G
Sbjct: 184 AVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTPVARATNLTRCLEQYQKAGVT 243
Query: 471 VLGGSVSS--KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
V+G + + L E+ G P ++V+GSEG GL LV +C LVRIP +P
Sbjct: 244 VVGLAADGDREVHELEEL--GGPVVIVVGSEGKGLSRLVGETCDFLVRIP--MP------ 293
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
G A ESLN VAAGV+L+
Sbjct: 294 -----------GGA---------ESLNAGVAAGVVLY 310
>gi|323359184|ref|YP_004225580.1| rRNA methylase [Microbacterium testaceum StLB037]
gi|323275555|dbj|BAJ75700.1| rRNA methylase [Microbacterium testaceum StLB037]
Length = 332
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/281 (30%), Positives = 132/281 (46%), Gaps = 47/281 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G VL AL AK A Y+ + + + ++R K+ +L +A N GI + E
Sbjct: 87 ETVTGRNSVLEALRAKI-PATAFYIAQRVEM--DDRVKE-------MLSIATNRGIPVLE 136
Query: 352 TSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
++ +L+ + G + HQG+ L P ++L D + L VALD VTDP+NLG
Sbjct: 137 VTRPELDRMAGFDGVHQGVALKVPPYTYAHPQDLLEQIIDRGEVPLLVALDGVTDPRNLG 196
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AIIRS FG G++L + SA ++ K S+G+ + + N+ L + G
Sbjct: 197 AIIRSTGAFGGQGLILPQRRSASVNSAAWKTSAGAAARIPVALAANLTATLKEFKKQGVF 256
Query: 471 VLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVT 526
VLG G VS A+ L + +P ++V+GSEG GL LV +C +V IP +
Sbjct: 257 VLGLAGDGDVSLPALELAD----RPVVIVVGSEGKGLSRLVTETCDQVVSIPIS------ 306
Query: 527 AGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A ESLN +AA V L+ +
Sbjct: 307 ----------------------TATESLNAGIAASVALYQV 325
>gi|258513621|ref|YP_003189843.1| TrmH family RNA methyltransferase [Desulfotomaculum acetoxidans DSM
771]
gi|257777326|gb|ACV61220.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
acetoxidans DSM 771]
Length = 246
Score = 103 bits (257), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/182 (35%), Positives = 100/182 (54%), Gaps = 3/182 (1%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++ +A GI ++E + L + HQG+ A+ E V+++ D ++ +Q
Sbjct: 40 EICSLARQNGIPVQEVDRTALEKISAEAVHQGVAAYAAAKEYVELE--DILARAGEQEPF 97
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LDE+TDP NLGAIIR+A G GVV+ + SA L+ VV+K+S+G++E + + N
Sbjct: 98 IIMLDEITDPHNLGAIIRTADAAGVHGVVVTRRRSALLTPVVAKSSAGAVEYVPVARVTN 157
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
++Q + ENG V G + V E P P +V+G EG GL LV+ C LVR
Sbjct: 158 LVQSIKILQENGIWVAGADMEGDKV-YWEAPLSGPIAIVIGGEGKGLGRLVKEKCDFLVR 216
Query: 517 IP 518
+P
Sbjct: 217 LP 218
>gi|405374472|ref|ZP_11028936.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Chondromyces
apiculatus DSM 436]
gi|397086977|gb|EJJ18055.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Myxococcus sp.
(contaminant ex DSM 436)]
Length = 266
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 129/274 (47%), Gaps = 38/274 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YGV PVL AL A+ E L++ EG + + ++L A GI +++ +
Sbjct: 20 VYGVNPVLEALRARPDEVERLFLVEG---------QLGARAAGELLSRARESGIRVEKVT 70
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L + HQG+V++ + +++++ + + L V LD + DP NLGAII
Sbjct: 71 RERLASLADGGVHQGVVVELRGFKYCEVEDILDAAKARGEPPLVVVLDGIQDPHNLGAII 130
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA GA GVV+ + ++G V+KAS+G++E + N+ + L E G V
Sbjct: 131 RSADALGAHGVVIAKDRAVQVTGTVAKASAGAVEHSRIARVVNVSRSLEELKEAGLWVAA 190
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
V + P+ P LV+G+EG G+R V + C +RIP G++
Sbjct: 191 ADVDATE-PMWSARLDGPLALVVGAEGAGVREGVLKHCDFRLRIP-------MTGQVG-- 240
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
SLN SV+AG+LL+ +
Sbjct: 241 -------------------SLNASVSAGILLYEV 255
>gi|452854159|ref|YP_007495842.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
gi|452078419|emb|CCP20169.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum UCMB5036]
Length = 249
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 121/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ G+ I+ + L+ +V + HQG+V + E ++ EL + D ++
Sbjct: 39 QQVMELAKKRGVIIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEDRNEQP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 98 FFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTSTVAKASTGAIEHIPVVKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 158 NLARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 217 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|158338300|ref|YP_001519477.1| RNA methyltransferase [Acaryochloris marina MBIC11017]
gi|158308541|gb|ABW30158.1| RNA methyltransferase, TrmH family, group 3 [Acaryochloris marina
MBIC11017]
Length = 309
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/285 (27%), Positives = 137/285 (48%), Gaps = 22/285 (7%)
Query: 245 NKRRNSFRRDVKARTEKPE-----YQRWNRQENSGRTTWK------EAAPSTVPKMVGEG 293
K R S K++ KP+ ++ +RQ S R K + P+ + G+
Sbjct: 2 TKARPSHNNHGKSKPRKPQRSYSSAKKPHRQSTSSRPPQKPRIRSKDKEPAQSEEEQGDL 61
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG VL+AL + R ++V +R + D + + +L A++ G I E
Sbjct: 62 IYGRHSVLSALEHQ-RSLNRVWV--------VSRLRYDPR-FHSLLNQAKSQGTIIDEVD 111
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
LN + HQG+ + E + I L + + +A D +TDP NLGA+I
Sbjct: 112 HRRLNQLTQQATHQGIAAQVAAYEYLDISTLIEQANAATPKPVIIAADSITDPHNLGAMI 171
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA GV++ + +A ++ VV+K ++G+LE + + N+ Q L + G+ + G
Sbjct: 172 RTAEALGAQGVIIPQRRAAGITSVVAKVATGALETLAIARVVNLNQGLEQLKKAGFWIYG 231
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S S+ ++ + +PT+LV+G+EG GL + C +V IP
Sbjct: 232 LSTSAPQS-IHTVTFTEPTVLVIGAEGPGLSVSTQHHCDQMVSIP 275
>gi|17555908|ref|NP_499333.1| Protein Y45F3A.9 [Caenorhabditis elegans]
gi|3881022|emb|CAA21494.1| Protein Y45F3A.9 [Caenorhabditis elegans]
Length = 294
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/294 (28%), Positives = 149/294 (50%), Gaps = 55/294 (18%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP++ GE L+G+ VL A+ + R+F+++++++ + NR D + +++L + +
Sbjct: 37 VPELQGEALFGLHSVLEAIRSGKRDFHSVFLKKAVE----NRADSDAR-IKEILSRIDEL 91
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
GI + L+ + + H G+ +DAS L+ ++ + ++ + +D+V D
Sbjct: 92 GIQKTLLTDDQLDRLTEFQLHNGICMDASALQF----------SNFEPKTVSIFVDKVLD 141
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAP--LSGVVSKASSGSLELMELRYCNNMMQF--- 460
P NLGAI RSA++FGA G+ L K P ++ + K+S G+LE + ++ N +F
Sbjct: 142 PGNLGAIGRSAWYFGADGLGL-VKGRGPKSITPAMIKSSCGALEHLPVQQFLNFNEFRDK 200
Query: 461 -------LVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
LV++ + G G +S+K+ L++ P +P +VLG EG G+ + C
Sbjct: 201 IKAAGGELVATCDPGAAEKAG-ISAKS--LDQWTPEKPVGIVLGDEGVGISRGILNLCDT 257
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++ I V DG++ V SLNVSV AG+LLHH+
Sbjct: 258 VI-------------SISPVRKDGSN-----------VTSLNVSVVAGILLHHI 287
>gi|449109481|ref|ZP_21746115.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 33520]
gi|448958724|gb|EMB39452.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 33520]
Length = 258
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 116/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + I++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKIEKQDNQFLDSITKILPEQLRDHRGIVLVTEAESQKKEMSIDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E +S V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKDSSFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++GSEG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPDLTFP--KKTVLIMGSEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|297623842|ref|YP_003705276.1| RNA methyltransferase [Truepera radiovictrix DSM 17093]
gi|297165022|gb|ADI14733.1| RNA methyltransferase, TrmH family, group 3 [Truepera radiovictrix
DSM 17093]
Length = 241
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 110/225 (48%), Gaps = 29/225 (12%)
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVAL 400
+A G++++ + L+ + HQG+V + L + +A + L V L
Sbjct: 38 LARKAGVTLERVPRTQLDQALKTTRHQGVVAELPELSYADPEAPFTRAARRGEKPLLVLL 97
Query: 401 DEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQF 460
D +TDP N GAIIRSA GA GVV + SAPLS VV+K S+G+ + L N+ ++
Sbjct: 98 DGITDPHNYGAIIRSAEVLGAHGVVTEERRSAPLSAVVAKVSAGASSHLPLVQVKNLPRY 157
Query: 461 LVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
+ + G + G S + A+P ++ +P LV+G+EG G+R LV +C LV IP
Sbjct: 158 MEALKARGVWLYGASGDAAALP-QQLDWDRPAALVIGAEGAGMRRLVRETCDELVAIP-- 214
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
G+ V SLN SVAAG+LL+
Sbjct: 215 -----MRGQ---------------------VASLNASVAAGILLY 233
>gi|340517446|gb|EGR47690.1| Hypothetical protein TRIREDRAFT_63503 [Trichoderma reesei QM6a]
Length = 383
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 94/367 (25%), Positives = 153/367 (41%), Gaps = 90/367 (24%)
Query: 252 RRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREF 311
R DV E PE + Q + + AA + LYG V AAL R+
Sbjct: 19 RDDVYDNVETPEPRERRNQMMAMNIKYTTAA--------SQFLYGKSVVKAALEQGRRKL 70
Query: 312 YALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHD---LNMVVGNRPHQG 368
Y L++ G +KD K + ++AE G+ I D ++ + RPH G
Sbjct: 71 YKLFIYGG-------ENRKDSKDNAIITRLAERRGVPITIIPNEDQRLMDKMSMGRPHNG 123
Query: 369 LVLDASPLEMVKIK----------------ELDPISADEDQAS----------------L 396
VL+ SPL + +K ELD S +E+ +
Sbjct: 124 FVLETSPLPRLPVKSLGRLEETLGKLGFHVELDHQSREEEAINGKDTFIPRKNNNAPKPF 183
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ L+E+ DP NLG I+R+A + G V + ++S+ L+ VV K+++G++E + + ++
Sbjct: 184 VLLLNEILDPGNLGGILRTASYLGVDAVGITNRSSSTLTPVVLKSAAGAVEEITIFSVDS 243
Query: 457 MMQFLVSSAENGWRVLGGS---------------VSSKAVPLNEIPPGQPTILVLGSEGT 501
+ F+ S ++GW+ +S+ V + P+ILVLG+EG
Sbjct: 244 PVSFIEESRKHGWKTYAAVAPPDPKLAQRHGDKFISTATVEAEQPLSKHPSILVLGNEGH 303
Query: 502 GLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
GL ++ + + + +P F S V+SLNVSVAAG
Sbjct: 304 GLSKPIKVAADYELSVP-------------------------YFVSNSCVDSLNVSVAAG 338
Query: 562 VLLHHLV 568
+L H V
Sbjct: 339 LLCHAFV 345
>gi|367475646|ref|ZP_09475096.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS 285]
gi|365272021|emb|CCD87564.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS 285]
Length = 295
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 89/281 (31%), Positives = 131/281 (46%), Gaps = 37/281 (13%)
Query: 247 RRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSA 306
R+ FRR K + + GR W+ A S P + LYG V AL+
Sbjct: 21 RKPPFRRQGGKSPGKFSAKPRGFERPHGR--WEREAGSDGPVI----LYGWHTVSLALAN 74
Query: 307 KTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPH 366
R LY+ E N ++ +G E + I S+ D + + H
Sbjct: 75 PNRTIRKLYLTE------NAARRLADEGIET------RVAPEIVRPSQID-QRLGPDAVH 121
Query: 367 QGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVL 426
QGL+ +A PL I L P L + LD++TDP N+GAI+RSA F +V
Sbjct: 122 QGLLAEADPLPSPDIDTLAP-------EGLILVLDQITDPHNVGAILRSAAAFDVKAIVT 174
Query: 427 CAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVP 482
A++S +GV++K++SG+LEL+ + N+ + L E G++ +G G AVP
Sbjct: 175 TARHSPEATGVLAKSASGALELVPIITVQNLARALTRLNERGFQTVGLDSAGDADIAAVP 234
Query: 483 LNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
L QP LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 235 LR-----QPLALVLGAEGKGLRQLTRETCSVVARLDMPGAI 270
>gi|448079240|ref|XP_004194350.1| Piso0_004838 [Millerozyma farinosa CBS 7064]
gi|359375772|emb|CCE86354.1| Piso0_004838 [Millerozyma farinosa CBS 7064]
Length = 424
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 107/386 (27%), Positives = 180/386 (46%), Gaps = 103/386 (26%)
Query: 245 NKRRNSFRRDV----KARTEKPEYQRWNR-----QENSGRTTWKEAAPST-------VPK 288
N+RR + +R V +AR + E+ + +R Q N + T+ E P T +
Sbjct: 71 NERREALQRKVERQRRARNMRKEHTKHSREDFKVQRNPRKDTYSE--PETTEGWGRGLGN 128
Query: 289 MVGEGLYGVGPVLAALSAKTRE-FYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
+ E LYG V AALSA+ RE F L VQ + +V K A+ +G+
Sbjct: 129 PLSEYLYGTHAVFAALSARRRESFSKLLVQSSREIPG------------EVAKAAKELGL 176
Query: 348 SIKE-TSKHDLNMVVGNRPHQGLVLDASPL------------------EMVKIKELDPIS 388
+++ SK +LN + N H G+VL+ PL E+ + EL +
Sbjct: 177 KVEQRLSKGELNRLTNNGVHNGVVLETKPLVLPLLGALGDCDGSNATYEVSTVNELYGTT 236
Query: 389 A-------------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLS 435
A E L + +D +TDPQN+GAI RSA++ GA +++ + N+A +
Sbjct: 237 APVQRAVARAAAAPTEPAFPLGIYVDSITDPQNIGAIARSAFYLGADFLIVPSHNTAKIG 296
Query: 436 GVVSKASSGSLELMELRYCNNMMQFLVSSAENGW--------------RVLGGSVSSKAV 481
V +KA++G+L+L++L ++ + F+ +S+ +GW R + ++++KA+
Sbjct: 297 PVAAKAAAGALDLLDLYQVDDPLHFIDASSRHGWSVVSSDASPHVHPNRKIASTLATKAI 356
Query: 482 PLNEIPP---GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
+ E+P P +LV+GSEG G+R ++ ++V + A N
Sbjct: 357 EVAELPSILRSSPVLLVMGSEGDGIRANIKLKSDYIV-------------SLHQQRAAHN 403
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLL 564
H V+SLNVSVA+ +LL
Sbjct: 404 H----------IVDSLNVSVASALLL 419
>gi|330931647|ref|XP_003303484.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
gi|311320500|gb|EFQ88423.1| hypothetical protein PTT_15708 [Pyrenophora teres f. teres 0-1]
Length = 657
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 90/343 (26%), Positives = 146/343 (42%), Gaps = 91/343 (26%)
Query: 282 APSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
P ++P E +YG VLAA+ A R+FY LY+ R ++ + +
Sbjct: 334 GPESLPYTTAASEFIYGTRSVLAAIKANRRKFYKLYIHA--------RGMENSQAILSTI 385
Query: 340 KMAE--NMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL------------- 384
+ + ++ + + + ++ RPH GL+L+ASP ++ I +L
Sbjct: 386 RSLKLFHIAVEVGDEYMQAMDKASNGRPHNGLILEASPPPILPITQLRAASIEEGAFNLS 445
Query: 385 -DPISADED----------------QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
D SA+E+ + L + +D V D NLGAI RSAY G ++
Sbjct: 446 LDRQSAEEEAINGKQELYEYKSDGWRHPLILYIDGVVDEGNLGAIARSAYVLGVDAIITP 505
Query: 428 AKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP 487
++A S + KASSG+ E + L QFL SS++ GWR+ +S AVPL++
Sbjct: 506 THHTAEWSPIAIKASSGAAEAIPLFRVKEPEQFLHSSSQVGWRIY----ASDAVPLSKQD 561
Query: 488 PGQ----------------------PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
Q PTIL++GSE +G++ + + + V IP VD
Sbjct: 562 GRQVVYAVAKKYSPLPAYHSPLAEHPTILMMGSEHSGVKKHLAKMAHYKVGIPHGRSVDE 621
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ V+S NVSVA G+L + ++
Sbjct: 622 -----------------------VGVDSFNVSVATGILCYQMM 641
>gi|332982727|ref|YP_004464168.1| TrmH family RNA methyltransferase [Mahella australiensis 50-1 BON]
gi|332700405|gb|AEE97346.1| RNA methyltransferase, TrmH family, group 3 [Mahella australiensis
50-1 BON]
Length = 249
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 131/272 (48%), Gaps = 41/272 (15%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G PV+ AL + R +Y+ G +R K + + +A++ GIS++E +
Sbjct: 12 GRNPVIEALKSG-RLIKIIYIAAG------SRGKT----VDCIKSLAQSRGISVQEIERV 60
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
L+ HQG+V +P +I+++ +A + Q + LD +TDP N+GAIIR+
Sbjct: 61 QLDKRSATGAHQGVVAYVAPYTYAQIEDILEAAAQKHQDPFVLLLDGITDPHNMGAIIRT 120
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A GA G+++ S ++ V KAS+G++E + + NM Q + ++G ++G
Sbjct: 121 AECMGAHGIIIPKDRSIGITAAVVKASAGAVEYIHIAAVTNMAQTVERLKKDGLWIMGAD 180
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
+ + P + P L++G EG+G+R LV+ C L+ IP +G I
Sbjct: 181 MRGR--PCRSMDLKGPIGLIIGGEGSGIRRLVKEKCDVLLSIP-------MSGHI----- 226
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
SLN SVAAG+L++ +
Sbjct: 227 ----------------ASLNASVAAGMLMYEI 242
>gi|331699814|ref|YP_004336053.1| TrmH family RNA methyltransferase [Pseudonocardia dioxanivorans
CB1190]
gi|326954503|gb|AEA28200.1| RNA methyltransferase, TrmH family, group 3 [Pseudonocardia
dioxanivorans CB1190]
Length = 329
Score = 103 bits (257), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/277 (31%), Positives = 125/277 (45%), Gaps = 46/277 (16%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A AL+V G + ++ R K+ + +A + GISI E
Sbjct: 85 ETVLGRNPVVECLRAGV-PATALHVAVGAT--ADERVKE-------AVHLAADAGISILE 134
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++DL+ + G HQG+ L P E EL + + +L ALD V DP+NLGA
Sbjct: 135 VPRNDLDRMAGGALHQGVALVVPPYEYAHPDELLEAAVGSGRPALIAALDGVMDPRNLGA 194
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++RS FG GVV+ + +A ++ V + S+G+ + + N+ + L A G V
Sbjct: 195 VVRSVSAFGGHGVVVPQRRAAGMTAVAWRTSAGTAARLPVARATNLTRTLQEYANTGLMV 254
Query: 472 LG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G G VS L P +LV+GSEG GL LV +C V IP
Sbjct: 255 AGLAADGDVSIDDFDLAT----DPLVLVIGSEGKGLSRLVRETCDVTVSIP--------- 301
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVAAGV+L
Sbjct: 302 -------------------LAREVESLNASVAAGVVL 319
>gi|424914504|ref|ZP_18337868.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392850680|gb|EJB03201.1| rRNA methylase, putative, group 3 [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 296
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/284 (30%), Positives = 134/284 (47%), Gaps = 31/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R + R + R E P Q R+ G WK P+ P V LYG+ V
Sbjct: 19 DTHYATLRRAHRDAKRERGEIPTPQPQKRRR--GAEDWK--PPALAPDQVH--LYGLHTV 72
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L+V + ++ R + D E +GI + S D++ V
Sbjct: 73 RAALDNPERKKIKLFVTQ----NALARLEVD----------VETLGIPFEIVSPQDIDKV 118
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA F
Sbjct: 119 LGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRSAVAF 171
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
A V+ ++S SGV++K++SG+LEL+ N+ L + + +G
Sbjct: 172 NAGAVITTQRHSPTESGVLAKSASGALELIPYIQVTNLADALGELHKLSFSTIGLDSEGP 231
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
A L G+ LVLGSEG GLR + L R+ PG I
Sbjct: 232 AA-LEGTFTGEKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 274
>gi|414167393|ref|ZP_11423622.1| RNA methyltransferase, TrmH family, group 3 [Afipia clevelandensis
ATCC 49720]
gi|410891210|gb|EKS39008.1| RNA methyltransferase, TrmH family, group 3 [Afipia clevelandensis
ATCC 49720]
Length = 307
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 87/297 (29%), Positives = 142/297 (47%), Gaps = 54/297 (18%)
Query: 245 NKRRNSFRRDVKARTE-KPEYQRWNRQENSGRTTWKE------------AAPSTVPKMVG 291
++ RN + + R+E +PE R + GR +W++ P +
Sbjct: 21 DRDRNPHGKPHQGRSEGRPE----GRSQGGGRPSWRDRDGKGGRGHGKGHGKGEGPVI-- 74
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
LYG PV AL+ R L+V E + R+ ++K +V + G
Sbjct: 75 --LYGWHPVTMALANPQRRIRKLFVTE-----NAERRLAEEKIDTRVAPELVHPG----- 122
Query: 352 TSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
D++ +G + HQGL+++A PL + + EL Q + + LD++TDP N+G
Sbjct: 123 ----DIDRRLGPDAVHQGLLVEADPLPGLHLDELP-------QDGVVLVLDQITDPHNVG 171
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AI+RSA FGA ++ ++S +GV++K++SG+LEL+ + N+ + L + G+
Sbjct: 172 AILRSAAAFGAKAIITTGRHSPEATGVLAKSASGALELVPIVEVPNLHRALNEMNDAGFL 231
Query: 471 VLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
+G G AVPL P LVLG+EG GLR L +C + R +PG I
Sbjct: 232 TVGLDSEGQGDLAAVPLR-----APLALVLGAEGKGLRQLTRETCAVVARMDMPGAI 283
>gi|375139382|ref|YP_005000031.1| rRNA methylase [Mycobacterium rhodesiae NBB3]
gi|359820003|gb|AEV72816.1| rRNA methylase, putative, group 3 [Mycobacterium rhodesiae NBB3]
Length = 314
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D++ E V + A++ GI+I E
Sbjct: 72 ELVLGRNPVVECLRAGV-PASALYVALG--------ADTDERLTESVTRAADS-GIAILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P + +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRIDLDRMSTNGLHQGIALQVPPYDYAHPDDLLKSATTDVSPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L + G +V
Sbjct: 182 IVRSVSAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLTDWGKAGLQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 242 VGLDAGGD-LTVDELDGTGPILVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 292 -------------------TESLNASVAAGVVLAEI 308
>gi|115525681|ref|YP_782592.1| RNA methyltransferase [Rhodopseudomonas palustris BisA53]
gi|115519628|gb|ABJ07612.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris BisA53]
Length = 276
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/270 (29%), Positives = 128/270 (47%), Gaps = 30/270 (11%)
Query: 256 KARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALY 315
K R +P +R ++GR W++ + LYG V+AAL+ R +L+
Sbjct: 7 KHRFGRPGEKRGRPSGDTGRKPWRDRGERPEGPAI---LYGWHTVVAALANPQRRIRSLF 63
Query: 316 VQEGLS--LSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ E + LS N + + + + + +G HQGL+ +
Sbjct: 64 LTENAARRLSDENIPTRVQPEIVRPSAIDQRLGPDAV---------------HQGLLAEV 108
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
PL I L Q + + LD++TDP N+GAI+RSA F +V+ A++S
Sbjct: 109 DPLPSPDIDSLP-------QEGIVLVLDQITDPHNVGAILRSAAAFAVKAIVITARHSPE 161
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
+GV++K++SG+LEL+ L N+ + L + G+ +G S L I QP
Sbjct: 162 ATGVLAKSASGALELVPLVSVGNLARALTELNDRGFLTIGLD-SEGDDDLASIELTQPLA 220
Query: 494 LVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
LVLG+EG GLR L ++C L R +PG+I
Sbjct: 221 LVLGAEGKGLRQLTRQTCGALARLDLPGDI 250
>gi|375360786|ref|YP_005128825.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|384263726|ref|YP_005419433.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|421733028|ref|ZP_16172143.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429503630|ref|YP_007184814.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451348514|ref|YP_007447145.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens IT-45]
gi|371566780|emb|CCF03630.1| RNA methyltransferase, TrmH family [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|380497079|emb|CCG48117.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum YAU B9601-Y2]
gi|407073069|gb|EKE46067.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429485220|gb|AFZ89144.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449852272|gb|AGF29264.1| 23S rRNA methyltransferase [Bacillus amyloliquefaciens IT-45]
Length = 249
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ G++I+ + L+ +V + HQG+V + E ++ EL + + ++
Sbjct: 39 QQVMELAKKRGVTIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEERNEQP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 98 FFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTSTVAKASTGAIEHIPVVKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 158 NLARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 217 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|418046583|ref|ZP_12684671.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
rhodesiae JS60]
gi|353192253|gb|EHB57757.1| RNA methyltransferase, TrmH family, group 3 [Mycobacterium
rhodesiae JS60]
Length = 314
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/276 (30%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V +A + GI+I E
Sbjct: 72 EVVLGRNPVLECLRANA-PATALYVALG--------AEADERMTESV-TLAADRGIAILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P + +L + + + +L VALD ++DP+NLGA
Sbjct: 122 VPRTDLDRLSSNGLHQGIALQVPPYDYAHPDDLLASATSDIEPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIRS F GV++ + SA ++ V + S+G+ + + N+ + L A+ G +V
Sbjct: 182 IIRSVAAFAGHGVLIPQRRSASVTAVAWRTSAGAAARVRVARATNLNRTLKEWADAGLQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++E P ++V+GSEG GL LV ++C ++ IP P
Sbjct: 242 VGLDAEGDTT-IDEFDASGPLVVVVGSEGKGLSRLVRQNCDAVLSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 292 -------------------TESLNASVAAGVVLAEI 308
>gi|332637993|ref|ZP_08416856.1| tRNA/rRNA methyltransferase [Weissella cibaria KACC 11862]
Length = 298
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/320 (26%), Positives = 147/320 (45%), Gaps = 52/320 (16%)
Query: 247 RRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSA 306
RR + RR R +P +R R E EA T E ++G + AL
Sbjct: 23 RRGADRR-FNDRDRQPRQKREMRVE-------AEAVDDTAQT---EFVFGHHASVEALKG 71
Query: 307 KTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPH 366
+T E +++Q GL+ N +V+ +A+ G+ I++ K L+ + + H
Sbjct: 72 ET-EINKVWLQSGLADKIRN----------EVMALAKKRGLIIQDAPKAKLDELTNGQNH 120
Query: 367 QGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVL 426
QG+VL + I +L +A++ +A ++ LD + DP NLG+I+R+A G G+++
Sbjct: 121 QGVVLSIAAYAYATIDDLFAKAAEKSEAPFFLVLDSIEDPHNLGSILRTADAAGVHGIII 180
Query: 427 CAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEI 486
+ + L+ VV+K S+G++E + + N++Q + E G V G + K
Sbjct: 181 PKRRAVQLTSVVAKTSTGAIEHVPVARVTNLVQTVEQLKERGLWVFGTDMDGK--DYRRW 238
Query: 487 PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQ 546
PT L++G+EG G+ PL++++ + IP G
Sbjct: 239 DAAGPTALIIGNEGKGISPLLKKTVDETLTIP-------MVGH----------------- 274
Query: 547 SFMAVESLNVSVAAGVLLHH 566
V+SLN SVAA +L++
Sbjct: 275 ----VQSLNASVAASLLIYQ 290
>gi|182437813|ref|YP_001825532.1| tRNA/rRNA methyltransferase [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|326778448|ref|ZP_08237713.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseus
XylebKG-1]
gi|178466329|dbj|BAG20849.1| putative tRNA/rRNA methyltransferase [Streptomyces griseus subsp.
griseus NBRC 13350]
gi|326658781|gb|EGE43627.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces griseus
XylebKG-1]
Length = 318
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 80/259 (30%), Positives = 124/259 (47%), Gaps = 46/259 (17%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLD 372
LYVQ+ + N+ + +D LK+A G I++ E + +L+ + HQGLVL
Sbjct: 96 LYVQQYID---NDERVRD------ALKLAGERGNINLMEAPRPELDRMTNGLNHQGLVLQ 146
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E ++L + D ++ L VALD VTDP+NLGAI+RS FG GVV+ + +A
Sbjct: 147 VPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAA 206
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV--PLNEIPPGQ 490
++ K+S+G+ + N+ + L + G V+G + + L E+
Sbjct: 207 GMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEEL--AG 264
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P ++V+GSEG GL LV +C + VRI PG
Sbjct: 265 PVVIVIGSEGKGLGRLVGETCDYRVRISMPG----------------------------- 295
Query: 549 MAVESLNVSVAAGVLLHHL 567
ESLN VAAG++L+ +
Sbjct: 296 -GAESLNAGVAAGIVLYEV 313
>gi|293191186|ref|ZP_06609119.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
odontolyticus F0309]
gi|292820607|gb|EFF79576.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces
odontolyticus F0309]
Length = 325
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A MG + E ++ DL++ HQG+ ++ E +L S
Sbjct: 110 KDDR-VEEVVRLASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGSL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVE 508
+ N+++ L + + G+ V+G A PL + P ++V G+EG GL LV
Sbjct: 229 PVARATNLVRALEEAKQAGYFVVGLDGGGDA-PLRGLSLADGPLVVVTGAEGAGLSRLVR 287
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V +IP+ T VESLN +VA G+ L+ +
Sbjct: 288 ETCDQIV----SIPIAST------------------------VESLNAAVATGIALYEV 318
>gi|261409539|ref|YP_003245780.1| TrmH family RNA methyltransferase [Paenibacillus sp. Y412MC10]
gi|261286002|gb|ACX67973.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
Y412MC10]
Length = 256
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 30/232 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ A+ +GI I+ K L+ +V HQG+V A+P V++ +L + ++ +
Sbjct: 47 IIAEAKKLGIVIQHVDKRKLDQMVPGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFL 106
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ LDE+ DP NLG+I+R+A GA GV+L + SA ++ VSK S+G++E + + N+
Sbjct: 107 LLLDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVTNL 166
Query: 458 MQFLVSSAENGWRVLGGSVSS-KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
Q + E G V+G V + + + E+ G P +V+G+E G+ L+ C LV+
Sbjct: 167 GQTIDQLKEMGVWVVGTVVDAVQELYDTEVFDG-PVAIVIGNENKGMGRLIREKCDVLVK 225
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+P AG+I+ SLN SVAAGV+++ ++
Sbjct: 226 LP-------MAGKIN---------------------SLNASVAAGVVMYEVL 249
>gi|29830509|ref|NP_825143.1| tRNA/rRNA methyltransferase [Streptomyces avermitilis MA-4680]
gi|29607621|dbj|BAC71678.1| putative tRNA/rRNA methyltransferase [Streptomyces avermitilis
MA-4680]
Length = 313
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 121/253 (47%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + E GI + E + +L+ + HQGLVL
Sbjct: 91 LYVQQFID--------NDERVREALQLAGERGGIHLMEAPRPELDRMTNGLNHQGLVLQV 142
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D + L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 143 PPYEYAHPEDLSAAAYDVGEDPLVVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 202
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPT 492
++ K S+G+ + N+ + L S + G V+G + + V L ++ P
Sbjct: 203 MTAGAWKTSAGTAARTPVARATNLTRTLESYKKEGLVVVGLTADGE-VELGDLEALAGPV 261
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C VRIP +P G A E
Sbjct: 262 VIVVGSEGKGLSRLVGETCDFRVRIP--MP-----------------GGA---------E 293
Query: 553 SLNVSVAAGVLLH 565
SLN VAAGV+L+
Sbjct: 294 SLNAGVAAGVVLY 306
>gi|423349581|ref|ZP_17327237.1| RNA methyltransferase, TrmH family, group 3 [Scardovia wiggsiae
F0424]
gi|393702697|gb|EJD64900.1| RNA methyltransferase, TrmH family, group 3 [Scardovia wiggsiae
F0424]
Length = 328
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 78/253 (30%), Positives = 121/253 (47%), Gaps = 42/253 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++++A G+ I E + +++ + HQG+++ A+P + EL
Sbjct: 93 NRIEHDGRTRE-IIRLAGLEGLKILEADRFEMDRIAHTGNHQGVIVKAAPYRYHSLLELA 151
Query: 386 PISADEDQA-------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+ + +A L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA
Sbjct: 152 DRAETKARAMESAPAGTRALARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSA 211
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K S+G+ + + N+ + + S E G+ +G A P
Sbjct: 212 SVTAAAWKVSAGAAAHLPVARVVNLTKAIESLKERGYYAIGLDGGGTAQVGGSGFETDPL 271
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
I+VLGSEG G+ LV C +V IP +TA VE
Sbjct: 272 IVVLGSEGKGISRLVREQCDAVVSIP------MTA----------------------MVE 303
Query: 553 SLNVSVAAGVLLH 565
SLN SVAAG+ L+
Sbjct: 304 SLNASVAAGIALY 316
>gi|374320666|ref|YP_005073795.1| tRNA/rRNA methyltransferase [Paenibacillus terrae HPL-003]
gi|357199675|gb|AET57572.1| tRNA/rRNA methyltransferase [Paenibacillus terrae HPL-003]
Length = 248
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/228 (31%), Positives = 119/228 (52%), Gaps = 30/228 (13%)
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
A+ GI + + K L+ +V HQG+V A+P V+++EL + + + + LD
Sbjct: 43 AKKAGIIVLQVDKRKLDQMVPGIQHQGVVAQAAPFAYVEVEELLAAARSKGEEPFLILLD 102
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
E+ DP NLG+I+R+A GA GV++ + SA ++ VSK S+G++E + + NN+ Q +
Sbjct: 103 EIEDPHNLGSILRTADCTGAHGVIVPKRRSAAVTVTVSKTSAGAVEYVPVARVNNLGQTI 162
Query: 462 VSSAENGWRVLGGSVS-SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
E G V+G V+ + V N + G P +V+G+E G+ L+ C LV++P
Sbjct: 163 DKLKEEGVWVVGTDVTATDPVFGNGVFTG-PVAIVIGNENKGMGRLIREKCDVLVKLP-- 219
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AG+I+ SLN SVAAGV+++ ++
Sbjct: 220 -----MAGQIN---------------------SLNASVAAGVVMYEVL 241
>gi|440226315|ref|YP_007333406.1| RNA methyltransferase [Rhizobium tropici CIAT 899]
gi|440037826|gb|AGB70860.1| RNA methyltransferase [Rhizobium tropici CIAT 899]
Length = 302
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 138/288 (47%), Gaps = 29/288 (10%)
Query: 237 EAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYG 296
++ D+ + R + R + R E P R++ +G WK P+ P V LYG
Sbjct: 19 KSAKDTHYATLRRAHRDAKRERGEIPTPTPQKRKK-TGADDWKP--PALAPDQVF--LYG 73
Query: 297 VGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHD 356
+ V AAL+ R+ L S + N + + + A+ +GI ++ S D
Sbjct: 74 LHTVRAALANPERKNIKL------STTQNALVRLE-------IGPADALGIPVEIVSPQD 120
Query: 357 LNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
++ V+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RS
Sbjct: 121 IDKVLGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRS 173
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A F A V+ ++S SGV++K++SG+LEL+ N+ L G+ +G
Sbjct: 174 AVAFDAGAVITTQRHSPTESGVMAKSASGALELIPYIQITNLADALGELHRLGFTTIGLD 233
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S PL G LVLGSEG GLR + L R+ PG I
Sbjct: 234 -SEGPAPLEGTFSGDKIALVLGSEGKGLRQKTRETVNALARLDMPGAI 280
>gi|389862472|ref|YP_006364712.1| tRNA/rRNA methyltransferase [Modestobacter marinus]
gi|388484675|emb|CCH86215.1| Uncharacterized tRNA/rRNA methyltransferase [Modestobacter marinus]
Length = 320
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 126/267 (47%), Gaps = 19/267 (7%)
Query: 257 ARTEKPEYQRWN----RQENSGRTTWK-EAAPSTVPKMVGEGLYGVGPVLAALSAKTREF 311
AR P Y++ R++N R + E P E L G PVL AL A
Sbjct: 42 ARPHHPAYKKAQADAARRDNRARVQRRNEEQP--------ELLLGRNPVLEALRAAI-PA 92
Query: 312 YALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
ALYV G R D++ E V ++A + G+ + E K + + + HQG+ L
Sbjct: 93 TALYVVTG----DTTRGGTDERITESV-QLAADRGLPLLEVGKAEFDRMSAGALHQGIGL 147
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
P E +L I+ + + L VALD VTDP+NLGAIIRSA F A GVV+ + +
Sbjct: 148 MVPPYEYAHPDDLLDIARNSGRPPLLVALDGVTDPRNLGAIIRSAAAFDAHGVVVPERRA 207
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
++G + S+G+ +++ N+ + L S + G + +G + + P
Sbjct: 208 VGMTGSAWRTSAGAAARLQVARATNLARSLGSYQDAGLQTVGLAADGDMTVHDYDGFADP 267
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIP 518
LV+G+EG GL LV C ++ IP
Sbjct: 268 IALVVGAEGAGLSRLVRERCDVVLSIP 294
>gi|365893784|ref|ZP_09431953.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. STM 3843]
gi|365425538|emb|CCE04495.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. STM 3843]
Length = 279
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 122/235 (51%), Gaps = 33/235 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AL+ R LY+ E + R+ D++ +V G
Sbjct: 47 LYGWHTVTLALANPKRRIRKLYLTENAA-----RRLADERIATRVTPEIVRPG------- 94
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
D++ +G + HQGL+ +A PL I+ L+ + + + LD++TDP N+GAI
Sbjct: 95 --DIDRQLGPDAVHQGLLAEADPLPSPDIETLETLG-------MILVLDQITDPHNVGAI 145
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA F +V A++S +GV++K++SG+LEL+ L N+ + L E G++ +
Sbjct: 146 LRSAAAFDVKAIVTTARHSPEATGVLAKSASGALELVPLITVQNLARALTRLNERGFQTV 205
Query: 473 G----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
G GS + A+ L+ QP LVLG+EG GLR L +C+ + R +PG+I
Sbjct: 206 GLDSAGSANLAAIELH-----QPLALVLGAEGKGLRQLTRETCSAVARLDLPGDI 255
>gi|37523750|ref|NP_927127.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
gi|35214755|dbj|BAC92122.1| tRNA/rRNA methyltransferase [Gloeobacter violaceus PCC 7421]
Length = 338
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/296 (28%), Positives = 137/296 (46%), Gaps = 40/296 (13%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
EAAP+ V E LYG VLAAL +R +++ E L + ++L
Sbjct: 79 EAAPTVVESDEAELLYGKQSVLAALQ-NSRPLNRVWLTEKLRYDPR---------FLRLL 128
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
A+ G I L+ + HQG+ A+ V+ +EL S E + +A
Sbjct: 129 DAAKAGGAVIDIVEPRRLDQLTAGGNHQGVAAQAAAHPYVEFEELI-ASLVERPDPVLLA 187
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQ 459
D + DP NLGA+IRSA FG G++L + + ++ V+K ++G++E + + N+ Q
Sbjct: 188 ADGIEDPHNLGALIRSAEAFGFQGIILPQRRAVGVTATVAKVAAGAVEHLPIARVTNLNQ 247
Query: 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519
+ E G++V+G + L E+ P ++V+GSEG G+ L +R C H+V IP
Sbjct: 248 AIERLKEAGYQVVGTQEKASQA-LYELKLDGPLVVVVGSEGKGISLLTQRHCDHMVSIP- 305
Query: 520 NIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
AG+ SLN SVA G++L+ ++ + +N
Sbjct: 306 ------LAGK---------------------TTSLNASVAGGIMLYEVMRQRRANQ 334
>gi|396584221|ref|ZP_10484705.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. ICM47]
gi|395548145|gb|EJG15469.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. ICM47]
Length = 325
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A MG + E ++ DL++ HQG+ ++ E +L S
Sbjct: 110 KDDR-VEEVVRLASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGSL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVE 508
+ N+++ L + G+ V+G A PL + P ++V G+EG GL LV
Sbjct: 229 PVARATNLVRALEEAKAAGYFVVGLDGGGDA-PLRGLSLADGPLVIVTGAEGAGLSRLVR 287
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP +T+ VESLN +VA G+ L+ +
Sbjct: 288 ETCDQIVSIP------ITS----------------------TVESLNAAVATGIALYEV 318
>gi|449120160|ref|ZP_21756546.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
H1-T]
gi|449122565|ref|ZP_21758898.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
MYR-T]
gi|448947555|gb|EMB28399.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
MYR-T]
gi|448948304|gb|EMB29141.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
H1-T]
Length = 258
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + I++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKIEKQDNQFLDSITKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E + V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGSFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++GSEG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPDLTFP--KKTVLIMGSEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|265984307|ref|ZP_06097042.1| RNA methyltransferase [Brucella sp. 83/13]
gi|306839077|ref|ZP_07471894.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
gi|264662899|gb|EEZ33160.1| RNA methyltransferase [Brucella sp. 83/13]
gi|306405624|gb|EFM61886.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. NF 2653]
Length = 286
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRARKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
SGV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QESGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|387896624|ref|YP_006326920.1| TrmH family RNA methyltransferase [Bacillus amyloliquefaciens Y2]
gi|387170734|gb|AFJ60195.1| RNA methyltransferase, TrmH family [Bacillus amyloliquefaciens Y2]
Length = 236
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ G++I+ + L+ +V + HQG+V + E ++ EL + + ++
Sbjct: 26 QQVMELAKKRGVTIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEERNEQP 84
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 85 FFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTSTVAKASTGAIEHIPVVKVT 144
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 145 NLARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 203
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 204 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 227
>gi|386867713|ref|YP_006280707.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. animalis ATCC 25527]
gi|385701796|gb|AFI63744.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. animalis ATCC 25527]
Length = 331
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 127/258 (49%), Gaps = 45/258 (17%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++++A G+++ E + +++ + + HQG++L A P + + EL
Sbjct: 93 NRIEHDDRTRE-IVRLAGQHGLNLLEADRLEMDRIARSGNHQGVILKADPFQYSSLHELV 151
Query: 385 -------DPISADEDQAS------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+ + +AS L++ALD +TDPQNLGA+IRSA FG +GV+L + S
Sbjct: 152 ERAERKARAMEMADSKASRLSARPLFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG-GSVSSKAVPLNEIPPGQ 490
A ++ K S+G+ M + N+ + + + E+G+ +G SK V
Sbjct: 212 ASVNAAAWKVSAGAAAHMPIARVVNLTKAIEALKEHGYYSIGLDGGGSKLVGETGFET-D 270
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
P ++VLGSEG GL L +C + IP +T+ A
Sbjct: 271 PLVVVLGSEGKGLSRLTREACDAIASIP------ITS----------------------A 302
Query: 551 VESLNVSVAAGVLLHHLV 568
VESLN SVAAG+ L+ V
Sbjct: 303 VESLNASVAAGIALYATV 320
>gi|395778309|ref|ZP_10458821.1| RNA methyltransferase, TrmH family, group 3 [Bartonella elizabethae
Re6043vi]
gi|423715434|ref|ZP_17689658.1| RNA methyltransferase, TrmH family, group 3 [Bartonella elizabethae
F9251]
gi|395417517|gb|EJF83854.1| RNA methyltransferase, TrmH family, group 3 [Bartonella elizabethae
Re6043vi]
gi|395429561|gb|EJF95622.1| RNA methyltransferase, TrmH family, group 3 [Bartonella elizabethae
F9251]
Length = 276
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 113/230 (49%), Gaps = 23/230 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ V AAL R F LYV + +L N + D Y + + T
Sbjct: 46 LYGIHSVQAALKNPKRIFKCLYVTQN-ALKRLNISESD---YPCPVTLC---------TP 92
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K+ ++V HQG+VL+ SPL+ K+ EL L + +D++TDP N+GAI+
Sbjct: 93 KYLDSLVGSEAVHQGIVLETSPLKPCKLSELT-------NTDLVIVMDQITDPHNVGAIM 145
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA F A ++ ++S SGV++KA+SG+LE++ N+ + L + G+ G
Sbjct: 146 RSAVAFKAKALITTCRHSPQESGVLAKAASGALEMIHYITVRNLAETLQELHQTGFTSFG 205
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S PL G LVLG+EG GLR + L R+ PGNI
Sbjct: 206 LD-SEGDQPLETTLTGNKIALVLGAEGKGLRKKTRETVYALARLDMPGNI 254
>gi|126696248|ref|YP_001091134.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9301]
gi|126543291|gb|ABO17533.1| RNA methyltransferase TrmH, group 3 [Prochlorococcus marinus str.
MIT 9301]
Length = 334
Score = 103 bits (256), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 117/232 (50%), Gaps = 29/232 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+LK ++ G+ I+E S + L+ + HQG+ L + + + +++L S +
Sbjct: 131 LLKDLKSKGVLIEEVSWNRLSQLTCGASHQGVALQLACSKTIPLEQLIYFSKHNCPNPII 190
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
VA D +TDP N+GAIIRSA F GV++ + SA L+G V+K ++G+LE + + N+
Sbjct: 191 VAFDGITDPHNVGAIIRSAEAFDCKGVIIPQRRSAGLTGTVAKVAAGALEHLHVSRVVNL 250
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ L +NG+ V+G S + + ++ P ++V+GSE G+ L ++ C +++ I
Sbjct: 251 NRALEELKKNGFLVVGLSGDGQ-ISISNFQEKAPLVVVVGSEDKGISLLTQKKCDYILSI 309
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
P G+ SLN SVAA + L+HL G
Sbjct: 310 P-------LKGK---------------------TSSLNASVAAAISLYHLTG 333
>gi|94986121|ref|YP_605485.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
11300]
gi|94556402|gb|ABF46316.1| RNA methyltransferase TrmH, group 3 [Deinococcus geothermalis DSM
11300]
Length = 246
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/274 (29%), Positives = 125/274 (45%), Gaps = 47/274 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PVL AL + + V G+ E ++ + + ++
Sbjct: 3 LYGRNPVLEAL--RDGRVTEVLVARGVE--------------EAFVRSLKAFDVRLRFAP 46
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +L+ + G HQG++ + L + ++ + + L V LD +TDP+N GAII
Sbjct: 47 RIELDQLAGTTQHQGVIAEVEDLAWATVDDILDRAEARGEDLLIVLLDGITDPRNFGAII 106
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA GA GVV+ + SAPLS VV K ++G+ + + N+ + + + E+G W +
Sbjct: 107 RSAEVLGAHGVVVEERRSAPLSPVVVKTAAGATSYLPVAQTKNLPRLIDALKEDGVW--I 164
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G+ A + LV+G+EG GLR LV C LVRIP T G+
Sbjct: 165 YGAAGEAAQDIGRTDLSGKVALVIGAEGEGLRRLVREKCDALVRIP-------TRGQ--- 214
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
V+SLN SVAAG+LL+
Sbjct: 215 ------------------VQSLNASVAAGILLYE 230
>gi|422875369|ref|ZP_16921854.1| RNA methyltransferase [Clostridium perfringens F262]
gi|380303638|gb|EIA15937.1| RNA methyltransferase [Clostridium perfringens F262]
Length = 289
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 119/236 (50%), Gaps = 29/236 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K+L +A+ I +KE + L+++ + HQG++ +P + ++++ ++ ++++
Sbjct: 81 KILGLAKEKKIVVKEVDRKKLDLMSETKAHQGVIAQITPFKYSTVEDILDLAKNKNEDPF 140
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP NLG+I+R+A GA G+++ + + ++G V KAS G++E M++ N
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTN 200
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + N + G ++ + G I ++GSEG G+ L ++ C LV+
Sbjct: 201 INNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI-IIGSEGRGMSNLTKKKCDKLVK 259
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
IP G+I+ SLN SVA G++++ ++ ++
Sbjct: 260 IP-------MVGKIN---------------------SLNASVAGGIMMYEVLKSRI 287
>gi|312135729|ref|YP_004003067.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
owensensis OL]
gi|311775780|gb|ADQ05267.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
owensensis OL]
Length = 253
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 4/195 (2%)
Query: 324 SNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKE 383
SN+ K K+ +++ + G+ +K ++ ++ + + QG++ A E +
Sbjct: 26 SNSAKDKETA---QIIDLCRQRGVVVKFVDRNKIDKMAQTKNPQGVIAIAREFEYCDTDD 82
Query: 384 LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
+ + + +A+ V LD +TDPQN G+IIRSA+ GA G+V+ A+NS P++ V KAS+
Sbjct: 83 ILLEARKKGEAAFLVLLDGITDPQNFGSIIRSAHLCGAHGIVIEARNSCPVTPAVEKASA 142
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G++E M++ N+ + + E G V SS P+ E P +V+GSEG G+
Sbjct: 143 GAVEYMKIARVVNLRRTIEELKEKGIWVFAADASSPK-PVYECDFTIPACIVIGSEGKGI 201
Query: 504 RPLVERSCTHLVRIP 518
LV+ L++IP
Sbjct: 202 SRLVKEGADFLIKIP 216
>gi|254430454|ref|ZP_05044157.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
gi|197624907|gb|EDY37466.1| methyltransferase of 23S rRNA [Cyanobium sp. PCC 7001]
Length = 378
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 103/188 (54%), Gaps = 9/188 (4%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ ++L+ A++ G+ ++E + L + G HQG+VL + E + + L +
Sbjct: 7 FLQLLREAKSSGVLVEEVTWARLGQLTGGAVHQGIVLQTAAAETLDLPSLIEGCRGIGEP 66
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L +ALD +TDP NLGAI RSA GA G+VL + SA L+G V+K ++G+LE + +
Sbjct: 67 PLLMALDGITDPHNLGAIARSAEALGAHGLVLPQRRSAGLTGSVAKVAAGALEHLPVARV 126
Query: 455 NNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
N+ + L S + G+RV+G GSVS + L P ++V GSE GL L +
Sbjct: 127 VNLNRALDSLKQEGYRVIGLASEGSVSLEQADLE-----GPLVIVTGSEADGLAMLTRKH 181
Query: 511 CTHLVRIP 518
C LV IP
Sbjct: 182 CDQLVSIP 189
>gi|163796067|ref|ZP_02190029.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
gi|159178526|gb|EDP63066.1| RNA methyltransferase TrmH, group 3 [alpha proteobacterium BAL199]
Length = 289
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/159 (39%), Positives = 93/159 (58%), Gaps = 4/159 (2%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASL-WVALDEVTDPQNLGAIIRSAYFFGASGV 424
HQGLVL +PL + +L I A E + + V LD+VTDP N+GA++RSA FGAS V
Sbjct: 103 HQGLVLKVTPLPDPNLSDL--IVAWEGRTDIVLVVLDQVTDPHNVGAVLRSAAAFGASAV 160
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN 484
VL ++ P++GV++K +SG+L+++ L N+ + L ENG+ G +V L
Sbjct: 161 VLQDRHGPPVTGVLAKIASGALDVVPLVRVVNLARALRDLQENGFWCT-GLAEDGSVDLG 219
Query: 485 EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
+ G +VLG+EG GLR L +C L R+P P+
Sbjct: 220 RVDLGGRCAIVLGAEGAGLRRLTRETCDALARLPTCPPI 258
>gi|87302222|ref|ZP_01085047.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. WH 5701]
gi|87283147|gb|EAQ75103.1| tRNA/rRNA methyltransferase (SpoU):RNA methyltransferase TrmH
[Synechococcus sp. WH 5701]
Length = 547
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 119/229 (51%), Gaps = 19/229 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G P AAL R + ++ L + + ++L+ A+ G+ ++E +
Sbjct: 182 VWGRHPAQAALEGD-RPIHRIWCTPELRFAPR---------FLQLLRDAKANGVLVEEVT 231
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L + G HQG+VL A+ E + + L + +A L +A+D +TDP NLGAI+
Sbjct: 232 WARLGQISGGAVHQGIVLQAAAAETLDLASLIDGCSTIGEAPLLMAVDGLTDPHNLGAIV 291
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA GA G+VL + +A L+G V+K ++G+LE + + N+ + + + G+RV+G
Sbjct: 292 RSAEALGAHGLVLPQRRNAGLTGSVAKVAAGALEHLPVARVVNLNRSIEQLKDAGYRVVG 351
Query: 474 ----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G+VS L+ P ++V GSE GL L + C L+RIP
Sbjct: 352 LAEEGNVSLMEADLD-----GPLVVVTGSEAQGLSMLTRKHCDQLIRIP 395
>gi|345018553|ref|YP_004820906.1| TrmH family RNA methyltransferase [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033896|gb|AEM79622.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
wiegelii Rt8.B1]
Length = 247
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 117/232 (50%), Gaps = 29/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K++ +A+ GI + T L+ + G++ HQG+V + + ++ +L + +
Sbjct: 38 KIINLAKEAGIVVSTTDNDILSKLAGSQNHQGVVAVGAVYKYFEVDDLLEYAEQRKEKPF 97
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LDE+TDP NLGAIIRSA FG G+++ + + ++ V K S+G++E M + +N
Sbjct: 98 LLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSN 157
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + E G ++G V++ E+ P +V+GSEG G+ LV ++C +V+
Sbjct: 158 INNTIRGLKERGLWIVGTDVNAGK-SFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
IP G+I+ SLN SVAA +L++ +V
Sbjct: 217 IP-------MKGKIN---------------------SLNASVAASILIYQVV 240
>gi|283783774|ref|YP_003374528.1| TrmH family RNA methyltransferase [Gardnerella vaginalis 409-05]
gi|283441096|gb|ADB13562.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
409-05]
Length = 331
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG+++ P + ++EL
Sbjct: 93 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIIVKVQPYQYHSLQELV 151
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D SA + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 152 ERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 212 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 271
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 272 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 303
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 304 ESLNASVAAGISLY 317
>gi|239988798|ref|ZP_04709462.1| putative tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL
11379]
gi|291445791|ref|ZP_06585181.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
gi|291348738|gb|EFE75642.1| tRNA/rRNA methyltransferase [Streptomyces roseosporus NRRL 15998]
Length = 318
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 81/259 (31%), Positives = 124/259 (47%), Gaps = 46/259 (17%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLD 372
LYVQ+ + N+ + +D VLK+A + G I++ E + +L+ + HQGLVL
Sbjct: 96 LYVQQYID---NDERVRD------VLKLAGDRGNINLMEAPRPELDRMTNGLNHQGLVLQ 146
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E +L + D + L VALD VTDP+NLGAI+RS FG GVV+ + +A
Sbjct: 147 VPPYEYAHPDDLLAAADDNHEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAA 206
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV--PLNEIPPGQ 490
++ K+S+G+ + N+ + L + G V+G + + L E+
Sbjct: 207 GMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEELD--G 264
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P ++V+GSEG GL LV +C + VRI PG
Sbjct: 265 PVVIVIGSEGKGLGRLVGETCDYRVRISMPG----------------------------- 295
Query: 549 MAVESLNVSVAAGVLLHHL 567
ESLN VAAG++L+ +
Sbjct: 296 -GAESLNAGVAAGIVLYEV 313
>gi|260906619|ref|ZP_05914941.1| rRNA methylase, putative, group 3 [Brevibacterium linens BL2]
Length = 311
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 60/183 (32%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+ + +A GIS+ E SK DL+ + + HQG+ L P + + ++L ++AD +A L
Sbjct: 103 EAITLATKRGISMLEASKPDLDRLTDDAIHQGIALQIPPYDYAEPRDLLEVAADRAEAPL 162
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGAI+RSA FG GV++ + +A ++ K S+G+ +++ N
Sbjct: 163 LVALDGITDPRNLGAIVRSAAAFGGHGVIIPERRAASMTAAAWKTSAGAAARIKVAQVVN 222
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERSCTHLV 515
+ + + + V+G + + V L E+ + P +V+GSEG G+ L+ C +V
Sbjct: 223 LARAIDELKKQNVFVVGLDMDGE-VELPELTFSRDPLCIVVGSEGKGISRLIADKCDQIV 281
Query: 516 RIP 518
IP
Sbjct: 282 SIP 284
>gi|394994767|ref|ZP_10387474.1| YacO [Bacillus sp. 916]
gi|393804334|gb|EJD65746.1| YacO [Bacillus sp. 916]
Length = 249
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ G++I+ + L+ +V + HQG+V + E ++ EL + + ++
Sbjct: 39 QQVMELAKKRGVTIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEERNEQP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 98 FFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTSTVAKASTGAIEHIPVVKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 158 NIARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 217 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|384136750|ref|YP_005519464.1| TrmH family RNA methyltransferase [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290835|gb|AEJ44945.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius subsp. acidocaldarius Tc-4-1]
Length = 253
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/278 (31%), Positives = 130/278 (46%), Gaps = 46/278 (16%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
G+ + G VLAAL R ++V EG S G + ++ A + GI ++
Sbjct: 18 GDLVKGRHAVLAALE-NERPVNKVWVAEGAS------------GIDAIVAKARSRGIVVQ 64
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
+ L+ + HQG++ +P V + D I D A L V LDE+ DP N G
Sbjct: 65 FVPRSRLDEMAS--AHQGVIAQVAPYAYVDLD--DVIRRDTGFAPLVVVLDEIADPHNFG 120
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AI+R+A GA GV++ + A ++ V+KA++G+LE M + N+ Q L + G+
Sbjct: 121 AILRTAEASGAQGVIIGKRRQAQVTDAVAKAAAGALETMPVARVANVAQALQRLKQAGYW 180
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
++G V K VP E+ PT +V+GSEG G+R V C +V IP
Sbjct: 181 IVGADVEGK-VPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFVVSIP------------ 227
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLN SVAAGVLL+ V
Sbjct: 228 ----------------ILGRVQSLNASVAAGVLLYEAV 249
>gi|345849692|ref|ZP_08802700.1| RNA methyltransferase [Streptomyces zinciresistens K42]
gi|345638813|gb|EGX60312.1| RNA methyltransferase [Streptomyces zinciresistens K42]
Length = 313
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/296 (30%), Positives = 139/296 (46%), Gaps = 42/296 (14%)
Query: 275 RTTWKEAAPSTVPKMVGEG----LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK 330
+T + P T P+ G+G + G PV+ AL LYVQ+ +
Sbjct: 50 KTRRAQGRPQT-PRRGGKGTSELVVGRNPVVEALREGV-PASTLYVQQFID--------N 99
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
D++ E + +E GI++ E + +L+ + HQGLVL P E ++L +A
Sbjct: 100 DERVREALQLASERGGINLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLAGAAAG 159
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
+ L VALD VTDP+NLGA++RS FG GVV+ + +A ++ K S+G+
Sbjct: 160 AGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAGMTAGAWKTSAGTAARTP 219
Query: 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
+ N+ + L + + G V+G + +A + G P ++V+GSEG GL LV +
Sbjct: 220 VARATNLTRALEAYKKAGVVVVGLAADGEAELGDVAALGGPVVIVVGSEGKGLSRLVGET 279
Query: 511 CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
C VRIP +P G A ESLN VAAG++L+
Sbjct: 280 CDIRVRIP--MP-----------------GGA---------ESLNAGVAAGIVLYE 307
>gi|75910610|ref|YP_324906.1| RNA methyl transferase TrmH [Anabaena variabilis ATCC 29413]
gi|75704335|gb|ABA24011.1| RNA methyltransferase TrmH, group 3 [Anabaena variabilis ATCC
29413]
Length = 327
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 143/309 (46%), Gaps = 52/309 (16%)
Query: 278 WKEAAPSTVPKMVGEG----LYGVGPVLAALSAKTREFYALYVQEGLS-LSSNNRKKKDK 332
+ +AAP +PK+ E +YG PVL+AL Q GL+ + R + D
Sbjct: 58 FSDAAP--IPKVKEENESDIIYGRHPVLSALEN----------QRGLNRIWVTPRLRYDP 105
Query: 333 KGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADED 392
+ + +L+ EN G I E L+ + HQG+ +P ++ EL +
Sbjct: 106 RFHNLILQAKEN-GAVIDEVEPKRLDQITDQANHQGIAAQIAPYSYIEFYELIAQAKSVT 164
Query: 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR 452
+ VA D +TDP NLGAIIR+A GA G+V+ + ++ ++ V K ++G+LE +
Sbjct: 165 DPVIIVA-DGITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVA 223
Query: 453 YCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
N+ + L E G+ + G+ + + PL+ + P +LV+GSEG GL L +RSC
Sbjct: 224 RVVNLSRALEDLKEAGFWIY-GTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCD 282
Query: 513 HLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570
LV IP G P SLN SVAAG+ L+ +
Sbjct: 283 VLVSIPLMGKTP------------------------------SLNASVAAGMALYEIFRQ 312
Query: 571 QVSNNSHIE 579
+ N +++
Sbjct: 313 RSLNTLYLD 321
>gi|428298244|ref|YP_007136550.1| TrmH family RNA methyltransferase [Calothrix sp. PCC 6303]
gi|428234788|gb|AFZ00578.1| RNA methyltransferase, TrmH family, group 3 [Calothrix sp. PCC
6303]
Length = 451
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/297 (26%), Positives = 132/297 (44%), Gaps = 52/297 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL+AL + RE +++ L S Y ++ A+ G + E
Sbjct: 195 IYGKYPVLSALENE-RELNRIWITPRLRYDSR---------YHSLITRAKENGTVVDEVD 244
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+ +P + ++E+ + + + + D + DPQNLGA+I
Sbjct: 245 PKRLDQLTNYANHQGIAAQIAPYAYIDVEEMVSKAFAVTDSPVILVADGIVDPQNLGAMI 304
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + +A ++ V K ++G+LE + N+ + L G+ + G
Sbjct: 305 RTAEALGAQGLVIPQRRAAGITSTVMKVAAGALENFLVSRVVNLSRTLEELKAAGFWIYG 364
Query: 474 GSVSSKAVPLNEI---------PPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIP 522
+V+ +VPLN + P +LV+GSEG GL L + C L+ IP G P
Sbjct: 365 TAVNG-SVPLNTVEFTSRKDHHQKATPIVLVIGSEGEGLSMLTQHCCDVLLSIPLAGKTP 423
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIE 579
SLN SVAAG+ L+ + + +N H++
Sbjct: 424 ------------------------------SLNASVAAGMALYEIFRQRWANTLHLD 450
>gi|441148096|ref|ZP_20964768.1| TrmH family RNA methyltransferase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
gi|440619982|gb|ELQ83019.1| TrmH family RNA methyltransferase [Streptomyces rimosus subsp.
rimosus ATCC 10970]
Length = 317
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 80/252 (31%), Positives = 124/252 (49%), Gaps = 39/252 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ N+ + ++ L++A + GI++ E + +L+ + HQGLVL
Sbjct: 96 LYVQQ---FIENDERVRE------ALQLAADRGINLMEAPRPELDRMTNGLNHQGLVLQV 146
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D+ + L VALD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 147 PPYEYAHPEDLAAAAFDDGEDPLIVALDGVTDPRNLGAVVRSVAAFGGHGVVVPERRAAG 206
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN-EIPPGQPT 492
++ K S+G+ + N+ + L + G V+G + + + E+ G P
Sbjct: 207 MTAGAWKTSAGTAARTPVARATNLTRTLEGYQKAGMTVVGLAADGEMELQDLEVLDG-PV 265
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C VRIP +P G A E
Sbjct: 266 VIVVGSEGKGLSRLVGETCDVRVRIP--MP-----------------GGA---------E 297
Query: 553 SLNVSVAAGVLL 564
SLN VAAGV+L
Sbjct: 298 SLNAGVAAGVVL 309
>gi|395492171|ref|ZP_10423750.1| RNA methyltransferase [Sphingomonas sp. PAMC 26617]
gi|404252570|ref|ZP_10956538.1| RNA methyltransferase [Sphingomonas sp. PAMC 26621]
Length = 214
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/161 (37%), Positives = 92/161 (57%), Gaps = 5/161 (3%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V G+ PHQG+V++ PLE + + +L + +D + LD+VTDP N+GAI+RSA
Sbjct: 34 LVPGDAPHQGIVIEVDPLEDMWLADL--LQQGQDDKRPLIVLDQVTDPHNVGAILRSAAA 91
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVS 477
F A G+V +++ P SG +++A+SG+LE++ N+ + L AE G WRV G
Sbjct: 92 FDALGIVTPDRHAPPESGTIARAASGALEMVPWIRVVNLARALDEIAEAGFWRV--GLTG 149
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
LN+ Q LVLG+EG G+R C L R+P
Sbjct: 150 EATQTLNQAMGTQRVALVLGAEGEGMRQNTASHCDELARLP 190
>gi|365860217|ref|ZP_09400036.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. W007]
gi|364010351|gb|EHM31272.1| putative tRNA/rRNA methyltransferase [Streptomyces sp. W007]
Length = 318
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 78/257 (30%), Positives = 122/257 (47%), Gaps = 42/257 (16%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMG-ISIKETSKHDLNMVVGNRPHQGLVLD 372
LYVQ+ + N+ + +D LK+A G I++ E + +L+ + HQGLVL
Sbjct: 96 LYVQQYID---NDERVRD------ALKLAGERGNINLMEAPRPELDRMTNGLNHQGLVLQ 146
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E ++L + D ++ L VALD VTDP+NLGAI+RS FG GVV+ + +A
Sbjct: 147 VPPYEYAHPEDLTAAAYDNNEDPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAA 206
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K+S+G+ + N+ + L + G V+G + + + P
Sbjct: 207 GMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQLAGPV 266
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
++V+GSEG GL LV +C + VRI PG
Sbjct: 267 VIVIGSEGKGLGRLVGETCDYRVRISMPG------------------------------G 296
Query: 551 VESLNVSVAAGVLLHHL 567
ESLN VAAG++L+ +
Sbjct: 297 AESLNAGVAAGIVLYEV 313
>gi|134097057|ref|YP_001102718.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
gi|291007002|ref|ZP_06564975.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
gi|133909680|emb|CAL99792.1| tRNA/rRNA methyltransferase [Saccharopolyspora erythraea NRRL 2338]
Length = 321
Score = 102 bits (255), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/252 (32%), Positives = 122/252 (48%), Gaps = 39/252 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYV +G+ +++R + +G A + GIS+ E + +L+ + G HQGL L
Sbjct: 98 LYVAQGID--ADDRVTEAVRG-------AGSRGISVVEVQRAELDRMTGGAMHQGLALQV 148
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
E +++ + + L VALD VTDP+NLGA+IRSA FGA GV+L + SA
Sbjct: 149 PAYEYAHPEDVLTEAHNSGLPPLIVALDGVTDPRNLGAVIRSAAAFGAHGVILPQRRSAG 208
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN-EIPPGQPT 492
L+ V + S+G+ + + N+ + L G V+G S E+ G P
Sbjct: 209 LTAVAWRTSAGTAAKLPVARAVNLTRTLKDLKSEGLMVVGLDADSDITSDELELATG-PL 267
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
++V+GSEG GL LV +C V IP AG +VE
Sbjct: 268 VVVVGSEGRGLSRLVRETCDQTVSIP-------MAG---------------------SVE 299
Query: 553 SLNVSVAAGVLL 564
SLN SVAAG++L
Sbjct: 300 SLNASVAAGIVL 311
>gi|386401969|ref|ZP_10086747.1| rRNA methylase, putative, group 3 [Bradyrhizobium sp. WSM1253]
gi|385742595|gb|EIG62791.1| rRNA methylase, putative, group 3 [Bradyrhizobium sp. WSM1253]
Length = 276
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/158 (37%), Positives = 95/158 (60%), Gaps = 10/158 (6%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I++L+ Q + + LD++TDP N+GAI+RSA F +V
Sbjct: 102 HQGLLAEADPLPSPDIEDLE-------QDGIVLVLDQITDPHNVGAILRSAAAFAVKAIV 154
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
A++S +GV++KA+SG+LEL+ + N+ + L + E G++ +G S + L+E
Sbjct: 155 TTARHSPEATGVLAKAASGALELVPMVTVQNLARALTTLNELGFQTVGLD-SEGSADLSE 213
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
+ +P LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 214 VTLREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEI 251
>gi|257458363|ref|ZP_05623510.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
ATCC 35580]
gi|257444237|gb|EEV19333.1| RNA methyltransferase, TrmH family, group 3 [Treponema vincentii
ATCC 35580]
Length = 274
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/244 (31%), Positives = 119/244 (48%), Gaps = 38/244 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVL-DASPLEMVKIKELDPISA 389
+K+L AE + + I+ + +L+ +V P H+G++L D P E D + A
Sbjct: 59 KKILAQAEKLSVPIERRTDAELDKLVAPLPEYLQNHRGIILIDERPQEQSPKLSSDALLA 118
Query: 390 D--EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ + + V LD +TDP N GAIIRSA F VVL + SA VSK S+G+
Sbjct: 119 ELASREKAFVVVLDSITDPHNTGAIIRSADQFSVDAVVLPERRSAGDFQTVSKISAGAAA 178
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+ L Y N+++ + NG+ V G + +P + P T+L++GSEG+G+ L+
Sbjct: 179 WVPLLYTANLVRTVEELKRNGFWVFGADAQGEPLPHTKFP--DKTLLIMGSEGSGISRLL 236
Query: 508 ERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ SC IP T+G++D SLNVSVAAG+L++ +
Sbjct: 237 KTSCDSFTAIP-------TSGKLD---------------------SLNVSVAAGILMYEV 268
Query: 568 VGHQ 571
Q
Sbjct: 269 RRQQ 272
>gi|163843517|ref|YP_001627921.1| RNA methyltransferase [Brucella suis ATCC 23445]
gi|163674240|gb|ABY38351.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis ATCC
23445]
Length = 286
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 132/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ + G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHHDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|157690879|ref|YP_001485341.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
gi|194017547|ref|ZP_03056158.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
7061]
gi|157679637|gb|ABV60781.1| tRNA/rRNA methyltransferase [Bacillus pumilus SAFR-032]
gi|194010819|gb|EDW20390.1| RNA methyltransferase, TrmH family, group 3 [Bacillus pumilus ATCC
7061]
Length = 249
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/260 (28%), Positives = 129/260 (49%), Gaps = 42/260 (16%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN-MVVGNRPHQ 367
RE Y L++ E N K + ++V+++A+ I+I+ + L+ MV G HQ
Sbjct: 22 RELYKLWMAE------NTVKGQA----QQVIELAKKQNITIQYVPRKKLDQMVTGQ--HQ 69
Query: 368 GLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
G+V + E ++ +L I+ ++ ++ LDE+ DP NLG+I+R+A GA G+V+
Sbjct: 70 GIVAQVAAYEYAELDDLYQIAEQRNEQPFFLILDEIEDPHNLGSIMRTADAVGAHGIVIP 129
Query: 428 AKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP 487
+ + L+ V+KAS+G++E + + N+ + L E G V G S+K +
Sbjct: 130 KRRAVGLTTTVAKASTGAIEHIPVAKVTNLSRALDEMKERGIWVAGTDASAKQ-DYRQFD 188
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQS 547
P LV+GSEG G+ L++ C L+++P AG+
Sbjct: 189 GTMPLALVIGSEGKGIGRLIKEKCDFLIKLP-------MAGK------------------ 223
Query: 548 FMAVESLNVSVAAGVLLHHL 567
V SLN SVAA +L++ +
Sbjct: 224 ---VTSLNASVAASLLMYEV 240
>gi|15805774|ref|NP_294471.1| RNA methyltransferase [Deinococcus radiodurans R1]
gi|6458456|gb|AAF10325.1|AE001930_6 RNA methyltransferase, TrmH family [Deinococcus radiodurans R1]
Length = 246
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/278 (30%), Positives = 131/278 (47%), Gaps = 49/278 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PVL AL A + + G+ + R+ +D +A + G+ ++
Sbjct: 3 LYGRNPVLEALPAG--RVAEVVLARGVE-DAFARQVQD---------LARDAGVRVRWLP 50
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS----LWVALDEVTDPQNL 409
+ +L+ +VG HQG+V + L+ + ++ D +AS L V LD VTDP+N
Sbjct: 51 RIELDQLVGTTQHQGVVAEVEELQWATVDDI----LDRAEASGAPLLMVLLDGVTDPRNF 106
Query: 410 GAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW 469
GAIIRSA GA GVV+ + SAPLS VV+K ++G+ + + N+ + + +G
Sbjct: 107 GAIIRSAEVLGAHGVVVEERRSAPLSPVVAKTAAGATAYLPVAQTKNLPRLIDQLKADGV 166
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V G + A + LV+G+EG G+R LV C LV IP G+
Sbjct: 167 WVYGAA-GEAAQDVTRTDFSGKAALVIGAEGEGMRRLVREKCDVLVSIP-------VRGQ 218
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V+SLN SVAAG+LL+ +
Sbjct: 219 ---------------------VQSLNASVAAGILLYEM 235
>gi|110800667|ref|YP_697113.1| RNA methyltransferase [Clostridium perfringens ATCC 13124]
gi|168211254|ref|ZP_02636879.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens B str. ATCC 3626]
gi|110675314|gb|ABG84301.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens ATCC 13124]
gi|170710748|gb|EDT22930.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens B str. ATCC 3626]
Length = 289
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K+L +A+ I +KE + L+++ + HQG++ +P + ++++ ++ +++
Sbjct: 81 KILGLAKEKKIVVKEVDRKKLDLMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPF 140
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP NLG+I+R+A GA G+++ + + ++G V KAS G++E M++ N
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTN 200
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + N + G ++ + G I ++GSEG G+ L ++ C LV+
Sbjct: 201 INNAIEELKANNLWIYGADIAGEEYSYETNFKGACGI-IIGSEGRGMSNLTKKKCDKLVK 259
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
IP G+I+ SLN SVA G++++ ++ ++
Sbjct: 260 IP-------MVGKIN---------------------SLNASVAGGIMMYEVLKSRI 287
>gi|154706093|ref|YP_001424432.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|164685717|ref|ZP_01945643.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
Goat Q177']
gi|165918586|ref|ZP_02218672.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii
Q321]
gi|212218447|ref|YP_002305234.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
gi|154355379|gb|ABS76841.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii Dugway
5J108-111]
gi|164601225|gb|EAX33789.2| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii 'MSU
Goat Q177']
gi|165917714|gb|EDR36318.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii
Q321]
gi|212012709|gb|ACJ20089.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuK_Q154]
Length = 270
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 127/274 (46%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V A L A + LYVQE +D + + +++ A+ +G+ + S
Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQE----------NRDDQRLQSLVEKAKGLGVKVILLS 76
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +
Sbjct: 77 RTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACL 135
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G
Sbjct: 136 RSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVG 195
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 196 TAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP--------------- 239
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GS VESLNVSVA G+ L+ +
Sbjct: 240 ----LRGS---------VESLNVSVACGICLYEV 260
>gi|336472516|gb|EGO60676.1| hypothetical protein NEUTE1DRAFT_76029 [Neurospora tetrasperma FGSC
2508]
Length = 608
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/262 (30%), Positives = 122/262 (46%), Gaps = 71/262 (27%)
Query: 357 LNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQAS-------------------- 395
++ + G+RPH G +L+ASPL + L + + A+ Q +
Sbjct: 355 MDKMSGSRPHNGYILEASPLPQPPVISLGEVVDAESGQGTTGYKVVLGHQSHEEALINGK 414
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L V +D++ DP NLGAI+RS F GA+ V + ++SA L+ V KAS
Sbjct: 415 SDFVAASSATHKPLVVVVDQILDPGNLGAILRSVSFLGATAVAITKRDSASLTPVALKAS 474
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGW-------RVLGGSVSSKAVPLNEI----PPGQ- 490
+G+ E + L +++ +FL S ENGW R G K + L+EI P G+
Sbjct: 475 AGASESLTLFSIDHLPKFLQDSRENGWLVYAAVPRTSGSGNLQKHLDLHEIEEIDPLGKN 534
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
P IL+LGSEG GL ++ + V IP +++ G +
Sbjct: 535 PCILLLGSEGEGLPGQIKSKADYEVNIP-----NMSGGTV-------------------- 569
Query: 551 VESLNVSVAAGVLLHHLVGHQV 572
++SLNVSVAAG+L + QV
Sbjct: 570 IDSLNVSVAAGLLTSAFMKGQV 591
>gi|298252979|ref|ZP_06976771.1| rRNA methylase [Gardnerella vaginalis 5-1]
gi|297532374|gb|EFH71260.1| rRNA methylase [Gardnerella vaginalis 5-1]
Length = 313
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 74/254 (29%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++K+A G+ + E + +++ + + HQG+++ P + ++EL
Sbjct: 75 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIIVKVQPYQYHSLQELV 133
Query: 385 -------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
D SA + L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 134 ERAEKKARAMEAADSDSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 193
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 194 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 253
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 254 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 285
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 286 ESLNASVAAGISLY 299
>gi|51246711|ref|YP_066595.1| tRNA/rRNA methyltransferase [Desulfotalea psychrophila LSv54]
gi|50877748|emb|CAG37588.1| related to tRNA/rRNA methyltransferase [Desulfotalea psychrophila
LSv54]
Length = 295
Score = 102 bits (255), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 147/328 (44%), Gaps = 53/328 (16%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAAL 304
NK+ N V+A+ ++ +R N+ + K A + + ++G+ P++ AL
Sbjct: 3 NKKTNQAGSGVQAKADRGAPRRDNKSAGQDK---KAATQDRRIRFSEDLIWGIHPIVEAL 59
Query: 305 SAKTREFYALYVQEGLSLSSNNRKKKDKKG--YEKVLKMAENMGISIKETSKHDLNMV-V 361
+ + Q KD++G +++++++A + + L
Sbjct: 60 KYEPNRISEIIAQ------------KDRRGAKFDEIVELARAAKVKVTFIDSISLQGDGA 107
Query: 362 GNRPHQGLVLDASPLEMVKIKEL-----DPISADEDQASLWVALDEVTDPQNLGAIIRSA 416
+ HQG++ + +++ + D + D + + D + DP NLGAI+RSA
Sbjct: 108 ASARHQGVIAKVTQADLMDFADFLQKFKDAV--DRGEKPRIIVCDSLQDPHNLGAIVRSA 165
Query: 417 YFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV 476
GA GV+L + SAPL G +K+S+G++ M++ N+++ L + G V G
Sbjct: 166 LASGAIGVLLTRERSAPLGGTAAKSSAGAISHMDICQVTNLVKSLAELKKVGAWVFGAIK 225
Query: 477 SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
+ AV L + P +V+GSEGTG+RPLV R C + IP GE+D
Sbjct: 226 DADAVSLFDADLNVPACIVVGSEGTGIRPLVRRECDIQLSIP-------MVGELD----- 273
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLL 564
SLN SVAA V+L
Sbjct: 274 ----------------SLNSSVAAAVIL 285
>gi|170077013|ref|YP_001733651.1| rRNA methyltransferase [Synechococcus sp. PCC 7002]
gi|169884682|gb|ACA98395.1| rRNA methyltransferase, TrmH family, group 3 [Synechococcus sp. PCC
7002]
Length = 388
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 137/275 (49%), Gaps = 13/275 (4%)
Query: 245 NKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAAL 304
NKRR R R++ E+ + E + +T +E + P+ + +YG VL+ L
Sbjct: 88 NKRRPITDRPKPQRSQGSEFIPQDAPELTPQTAPEEVTEAVTPEEDNDLIYGKHAVLSVL 147
Query: 305 SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
++ R ++V L NR + +L+ A+N G I E S L+ +
Sbjct: 148 ESE-RPLNRIWVTS--RLRHANR-------FHTLLQAAKNQGTVIDEVSMSRLDYLTNRG 197
Query: 365 PHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGV 424
HQG+ + +P E +++ +L + + ++ + V D +TDP NLGAIIR+A GA G+
Sbjct: 198 VHQGIAVQTAPYEYMELPDLIEQAKAKTESPVVVIADGITDPHNLGAIIRTAEAIGAQGM 257
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV-SSKAVPL 483
++ + + ++ V K ++G+LE + N+ + + E G+ + G + +SKA L
Sbjct: 258 IIPQRRAVGVTSTVMKVAAGALEHFPVARVVNLSRAMEELKEAGFWIYGTAAGTSKA--L 315
Query: 484 NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ I LV+GSEG GL L ++ C LV IP
Sbjct: 316 HNIKFEGAIGLVIGSEGQGLSLLTQKHCDELVAIP 350
>gi|183602645|ref|ZP_02964009.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis HN019]
gi|219684006|ref|YP_002470389.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|241191611|ref|YP_002969005.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|241197016|ref|YP_002970571.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|384190253|ref|YP_005576001.1| 23S rRNA Gm2251-methyltransferase [Bifidobacterium animalis subsp.
lactis BB-12]
gi|384193046|ref|YP_005578793.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|384194601|ref|YP_005580347.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
animalis subsp. lactis BLC1]
gi|384196172|ref|YP_005581917.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis V9]
gi|387821469|ref|YP_006301512.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Bifidobacterium
animalis subsp. lactis B420]
gi|387823157|ref|YP_006303106.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Bifidobacterium
animalis subsp. lactis Bi-07]
gi|423678567|ref|ZP_17653443.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis BS 01]
gi|183218063|gb|EDT88710.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis HN019]
gi|219621656|gb|ACL29813.1| tRNA/rRNA methyltransferase [Bifidobacterium animalis subsp. lactis
AD011]
gi|240250003|gb|ACS46943.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis Bl-04]
gi|240251570|gb|ACS48509.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis DSM 10140]
gi|289177745|gb|ADC84991.1| 23S rRNA Gm2251 methyltransferase [Bifidobacterium animalis subsp.
lactis BB-12]
gi|295794603|gb|ADG34138.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis V9]
gi|340365783|gb|AEK31074.1| Methyltransferase [Bifidobacterium animalis subsp. lactis CNCM
I-2494]
gi|345283460|gb|AEN77314.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
animalis subsp. lactis BLC1]
gi|366041756|gb|EHN18237.1| tRNA/rRNA methyltransferase protein [Bifidobacterium animalis
subsp. lactis BS 01]
gi|386654170|gb|AFJ17300.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Bifidobacterium
animalis subsp. lactis B420]
gi|386655765|gb|AFJ18894.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Bifidobacterium
animalis subsp. lactis Bi-07]
Length = 331
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/258 (30%), Positives = 126/258 (48%), Gaps = 45/258 (17%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL- 384
NR + D + E ++++A G+++ E + +++ + + HQG++L A P + + EL
Sbjct: 93 NRIEHDDRTRE-IVRLAGQHGLNLLEADRLEMDRIARSGNHQGVILKADPFQYSSLHELV 151
Query: 385 -------DPISADEDQAS------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+ + +AS L++ALD +TDPQNLGA+IRSA FG +GV+L + S
Sbjct: 152 ERAERKARAMEMADSKASRLSARPLFIALDGITDPQNLGAVIRSAAAFGVNGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG-GSVSSKAVPLNEIPPGQ 490
A ++ K S+G+ M + N+ + + + E G+ +G SK V
Sbjct: 212 ASVNAAAWKVSAGAAAHMPIARVVNLTKAIEALKERGYYSIGLDGGGSKLVGETGFET-D 270
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
P ++VLGSEG GL L +C + IP +T+ A
Sbjct: 271 PLVVVLGSEGKGLSRLTREACDAIASIP------ITS----------------------A 302
Query: 551 VESLNVSVAAGVLLHHLV 568
VESLN SVAAG+ L+ V
Sbjct: 303 VESLNASVAAGIALYATV 320
>gi|170783051|ref|YP_001711385.1| tRNA/rRNA methyltransferase [Clavibacter michiganensis subsp.
sepedonicus]
gi|169157621|emb|CAQ02819.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. sepedonicus]
Length = 357
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 9/188 (4%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQA 394
++VL +A GI + E + +L+ + G+ HQGL L P E EL + Q
Sbjct: 143 KEVLSLATGRGIPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQV 202
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD +TDP+NLGAIIRS FG GV++ + S L+ K S+G+ +
Sbjct: 203 PLMVALDGITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMA 262
Query: 455 NNMMQFLVSSAENGWRVL----GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
+N+ Q L + + G V+ GG +S L + +P ++V+GSEG GL LV +
Sbjct: 263 SNLTQTLKALKQRGVFVVGLDGGGDMSLHEFTLAD----RPIVVVVGSEGKGLSRLVTET 318
Query: 511 CTHLVRIP 518
C +V IP
Sbjct: 319 CDTIVSIP 326
>gi|427391120|ref|ZP_18885526.1| RNA methyltransferase, TrmH family, group 3 [Actinobaculum
massiliae ACS-171-V-Col2]
gi|425732458|gb|EKU95268.1| RNA methyltransferase, TrmH family, group 3 [Actinobaculum
massiliae ACS-171-V-Col2]
Length = 335
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 91/315 (28%), Positives = 144/315 (45%), Gaps = 67/315 (21%)
Query: 284 STVPKM-----VGEG---LYGVGPVLAALSAK---TREFYALYVQEGLSLSSNNRKKKDK 332
S PK+ + EG + G PVL A+ A +R F A S++S+ R
Sbjct: 64 SRTPKLRAELAIAEGHELVVGRNPVLEAVRAGIPLSRVFLAA------SMTSDER----- 112
Query: 333 KGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL----DPIS 388
++V + A G + E S+ +L+ + G HQG+ ++ P +EL D S
Sbjct: 113 --LQEVAQRATASGTRLVEVSRTELDRMCGGETHQGVGIEVPPYAYADAEELADSADDRS 170
Query: 389 ADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
+ +D L++ALD VTDP NLGA +RSA F A GV++ + +A ++ V K S+G+ +
Sbjct: 171 SAKDVPPLFIALDSVTDPHNLGAAMRSAAAFNADGVIIPERRAAGVNATVWKVSAGAAAI 230
Query: 449 MELRYCNNMMQFLVSSAENGWRVL----GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLR 504
+ + N+++ L G+ V+ GG VS + + L + P +LV GSEG GL
Sbjct: 231 LPVARVTNLVRTLQDFKSRGYFVVGLDGGGDVSIENLELADT----PLVLVTGSEGKGLA 286
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
L +C + IP + M ESLN +VA G+ L
Sbjct: 287 RLTRETCDQIASIP--------------------------ISARM--ESLNAAVATGIAL 318
Query: 565 HH---LVGHQVSNNS 576
+ L H+V +
Sbjct: 319 YEVARLRAHRVEGGA 333
>gi|221133725|ref|ZP_03560030.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Glaciecola sp.
HTCC2999]
Length = 247
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 79/275 (28%), Positives = 126/275 (45%), Gaps = 40/275 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ + A L + + LY+ +G +D + K++ +A GISI+ +
Sbjct: 8 LYGIHALTAVLEREPQRILELYIAKG----------RDDERLHKLINLARKEGISIQFCN 57
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L+ HQG+V A P +++ +LD I + + L V LD VTDP NLGA++
Sbjct: 58 KKVLDDKSKGESHQGVVARAYPAKVLTETDLDTIISQSAKPFLLV-LDGVTDPHNLGAVL 116
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA G V++ SA L+ V K + G+ +++ L N+ + L E V+G
Sbjct: 117 RSADAAGVDAVIVPKDKSASLNATVRKVACGAADVIPLIQVTNLARTLSELQEQQIWVVG 176
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ ++ + G P LV+G+EG G+R L C L+++P
Sbjct: 177 TAGEARQSVFDCDMAG-PVALVMGAEGKGMRRLTRERCDELIKLP--------------- 220
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V SLNVSVA G+ L+ +V
Sbjct: 221 -------------MLGTVSSLNVSVATGICLYEIV 242
>gi|75676251|ref|YP_318672.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
Nb-255]
gi|74421121|gb|ABA05320.1| RNA methyltransferase TrmH, group 3 [Nitrobacter winogradskyi
Nb-255]
Length = 283
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 93/162 (57%), Gaps = 18/162 (11%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I+ L Q + + LD++TDP N+GAI+RSA F +V
Sbjct: 110 HQGLLAEADPLPSPDIETLT-------QEGIVLVLDQITDPHNVGAIMRSAAAFSVKAIV 162
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAV 481
A++S +GV++K++SG+LE++ L N+ + L + G+ +G GS + AV
Sbjct: 163 TTARHSPEATGVLAKSASGALEIVPLVLVQNLARALAGLNDRGFMTVGLDSAGSENLAAV 222
Query: 482 PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL E P LVLG+EG GLR L +C+ + R+ PG+I
Sbjct: 223 PLRE-----PLALVLGAEGKGLRQLTRDTCSAVARLDMPGHI 259
>gi|406598295|ref|YP_006749425.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
ATCC 27126]
gi|407685285|ref|YP_006800459.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'English Channel 673']
gi|407701526|ref|YP_006826313.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Black Sea 11']
gi|406375616|gb|AFS38871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
ATCC 27126]
gi|407246896|gb|AFT76082.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'English Channel 673']
gi|407250673|gb|AFT79858.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Black Sea 11']
Length = 246
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 82/277 (29%), Positives = 129/277 (46%), Gaps = 40/277 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + + L + + V +G ++ + ++ A GIS++
Sbjct: 5 EWLYGLHAMQSVLEKEPERVMEVLVLKG----------RNDERLTNIVNQARRFGISVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ V HQG+V A P ++ +LD I E Q L + LD VTDP NLGA
Sbjct: 55 CQRKALDDKVSGEQHQGVVARAKPARVLDEADLDKILESEAQ-PLILVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G VV+ SA L+G V K + G+ E++ L N+ + L + G +
Sbjct: 114 CLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWI 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + + L ++ PT LV+G+EG G+R L + +C LV++P AG
Sbjct: 174 VGTAGETDKT-LYDVDLKGPTALVMGAEGKGMRRLTKETCDELVKLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L+ +V
Sbjct: 223 ------------------SVTSLNVSVATGVCLYEIV 241
>gi|163847629|ref|YP_001635673.1| RNA methyltransferase [Chloroflexus aurantiacus J-10-fl]
gi|222525486|ref|YP_002569957.1| TrmH family RNA methyltransferase [Chloroflexus sp. Y-400-fl]
gi|163668918|gb|ABY35284.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus
aurantiacus J-10-fl]
gi|222449365|gb|ACM53631.1| RNA methyltransferase, TrmH family, group 3 [Chloroflexus sp.
Y-400-fl]
Length = 252
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/230 (29%), Positives = 121/230 (52%), Gaps = 9/230 (3%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E LYG V +L A+ R F+ LYV + + ++ +++ +A+ G+
Sbjct: 1 MATELLYGRNAVRESLRARRRVFHRLYVSQSV---------QESGIIAEIINLAQQAGVP 51
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++ + L+ + + HQG++L+A P V++ +A+ +A+L + LD + DPQN
Sbjct: 52 VERIERQTLDRRLRDANHQGVMLEAEPYPYVELDTCLNAAAERREAALLLLLDHLQDPQN 111
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
+G ++R+A G GVV+ + +A ++ V ASSG++E + + N+ Q + G
Sbjct: 112 IGTLLRTAEAVGCHGVVIPGRRAAEITPAVVNASSGAVEHLRVAMVTNLNQTIEELQHAG 171
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
V+G +A ++ + P LV+G+EGTG+ LV C LVR+P
Sbjct: 172 IWVVGLEQDEQAQDIDAVDLDLPLALVIGAEGTGIARLVRERCDFLVRLP 221
>gi|418335587|ref|ZP_12944495.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-06A1]
gi|356416180|gb|EHH69816.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HC-06A1]
Length = 243
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 86/282 (30%), Positives = 128/282 (45%), Gaps = 42/282 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V A L F YV +G ++D + VL +G+SI+E S
Sbjct: 2 IYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVSIQEMS 51
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ HQGL+ P + +LD I A +Q L V LD VTDP NLGA +
Sbjct: 52 RKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHNLGACL 110
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G W V
Sbjct: 111 RNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV- 169
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G+ + + +V+G+EG G+R L +C L++IP AG
Sbjct: 170 -GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG---- 217
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
+V SLNVSVA GV L V +++N
Sbjct: 218 -----------------SVSSLNVSVACGVCLFEAVRQRMAN 242
>gi|306840281|ref|ZP_07473055.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
gi|306289808|gb|EFM60990.1| RNA methyltransferase, TrmH family, group 3 [Brucella sp. BO2]
Length = 286
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAGAEGKSPRKPQRPTIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|241951390|ref|XP_002418417.1| mitochondrial rRNA methyltransferase [Candida dubliniensis CD36]
gi|223641756|emb|CAX43718.1| 21s rRNA [GM2251] 2'o-methyltransferase [Candida dubliniensis CD36]
Length = 440
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 90/329 (27%), Positives = 150/329 (45%), Gaps = 94/329 (28%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMA-ENMGISIKE- 351
++G PV A L+A R LY + N D ++++A E GI+ K
Sbjct: 147 VFGTHPVKAVLAAGKRRMLDLY--------TFNNDDPD------IVELAVEKYGITPKRL 192
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-----------------DPISAD---- 390
K+ LN++ N H G+VL + LE+ IKE+ D ++ +
Sbjct: 193 KDKNALNILCKNGVHNGVVLKTNKLEIPYIKEVGHAENGEYKLAIESLEDDSVNIETKTV 252
Query: 391 --------EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
E+ L + LDE+TDPQN+G+I+RSAYFFG +V+ ++A L V +KAS
Sbjct: 253 IRDGNEEVEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHSTAKLGPVANKAS 312
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGS----------------------VSSKA 480
+G+L+L+++ + ++F+ S ++GW V+ S + +K
Sbjct: 313 AGALDLIDIYQTGSSLKFIDSVRQSGWHVISTSGRPTGAKPREEVNDDLEIPEPHLKNKF 372
Query: 481 VPLNE---IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
+ L + I P +L++GSEG+G+R ++ +LV IP D++
Sbjct: 373 IELQDLRTILRKTPVMLIIGSEGSGVRTNMKMRSDYLVGIP-------KLRRNDNI---- 421
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
V+SLN VA GV+L +
Sbjct: 422 -------------VDSLNAGVATGVILQN 437
>gi|329925610|ref|ZP_08280451.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
HGF5]
gi|328939739|gb|EGG36081.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus sp.
HGF5]
Length = 250
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 121/232 (52%), Gaps = 30/232 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ A+ +GI I+ K L+ +V HQG+V A+P V++ +L + ++ +
Sbjct: 41 IIAEAKKLGIVIQHVDKRKLDQMVPGVQHQGVVAQAAPYAYVEVDDLLKAAEEKGEPPFL 100
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ LDE+ DP NLG+I+R+A GA GV+L + SA ++ VSK S+G++E + + N+
Sbjct: 101 LLLDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQVTATVSKTSAGAVEYVPVARVTNL 160
Query: 458 MQFLVSSAENGWRVLGGSVSS-KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
Q + E G V+G V + + + E+ G P +V+G+E G+ L+ C LV+
Sbjct: 161 GQTIDQLKEMGVWVVGTVVDAVQELYDTEVFDG-PVAIVIGNENKGMGRLIREKCDVLVK 219
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+P AG+I+ SLN SVAAGV+++ ++
Sbjct: 220 LP-------MAGKIN---------------------SLNASVAAGVVMYEVL 243
>gi|407009679|gb|EKE24766.1| hypothetical protein ACD_6C00036G0019 [uncultured bacterium]
Length = 249
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 80/269 (29%), Positives = 126/269 (46%), Gaps = 38/269 (14%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK FY ++ E L L+ K +D + ++VL++AE GIS+++ S+ L
Sbjct: 2 AKPEYFYGVHSVESLLELEPERVLTLFTLKGRDDQRLKRVLELAEPFGISVQQASRDKLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V + K+L+ + + QA L +ALD +TDP NLGA IR+A
Sbjct: 62 KLAGQPFHQGVVAAVRAHPTLNEKDLESLLSANPQA-LLLALDHITDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN-GWRVLGGSVS 477
V+ SA L+ K ++G + ++ N+ + L E+ RV+G +
Sbjct: 121 MCVEAVIAPRDRSATLTPTARKVAAGGADKVKFIQVTNLARTLGQIKEDFNVRVVGTMLD 180
Query: 478 SKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDAD 536
KA+P+ G +V+G+E TGLRP+ + C V IP AG +
Sbjct: 181 EKALPIQNFDFTGTGVCVVMGAEDTGLRPITQSQCDQTVYIP-------MAGNL------ 227
Query: 537 GNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+SLNVSVA G+ L+
Sbjct: 228 ---------------QSLNVSVATGMALY 241
>gi|418936937|ref|ZP_13490612.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium sp.
PDO1-076]
gi|375056346|gb|EHS52546.1| RNA methyltransferase, TrmH family, group 3 [Rhizobium sp.
PDO1-076]
Length = 291
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 83/284 (29%), Positives = 134/284 (47%), Gaps = 30/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
D+ + R R + R E P Q R++++ T AP V LYG+ V
Sbjct: 13 DTHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPVAPDQV------HLYGLHTV 66
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL R+ L S + + E V ++G ++ + DL+ +
Sbjct: 67 RAALDNPERKLIKL---------SATQNALVRLQIESV----ASLGFPVEMVTPQDLDKI 113
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL + +++ L ++ L + LD+VTDP N+GAI+RSA F
Sbjct: 114 LGPEAIHQGVMLETRPLPVRRLEALK-------ESPLLLVLDQVTDPHNVGAIMRSAVAF 166
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
GA V+ ++S SGV++K++SG+LE++ N+ L + G+ +G S
Sbjct: 167 GAGAVITTMRHSPTESGVLAKSASGALEMIPYIQITNLSDALAELHKLGFFSIGLD-SEG 225
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
P+ G LVLG+EG GLR + + L R+ PG I
Sbjct: 226 PQPMESTLTGDKIALVLGAEGKGLRQKTRDTVSALARLDMPGEI 269
>gi|39936427|ref|NP_948703.1| RNA methyltransferase TrmH group 3 [Rhodopseudomonas palustris
CGA009]
gi|192292212|ref|YP_001992817.1| RNA methyltransferase [Rhodopseudomonas palustris TIE-1]
gi|39650282|emb|CAE28805.1| putative rRNA methylase [Rhodopseudomonas palustris CGA009]
gi|192285961|gb|ACF02342.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris TIE-1]
Length = 275
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 140/276 (50%), Gaps = 41/276 (14%)
Query: 259 TEKPEYQRWNRQENSGRTTWKEAAPSTVPK-MVGEG---LYGVGPVLAALSAKTREFYAL 314
+++P R++R++ R + A P+ G+G LYG V AAL+ R+F L
Sbjct: 2 SDRPPNPRFSRRDGPPRGKPRPAGFRRDPRERDGDGPVILYGWHTVTAALANPQRKFRKL 61
Query: 315 YVQEGLS--LSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVG-NRPHQGLVL 371
++ E + L+ N D + ++++ +E ++ +G + HQG++
Sbjct: 62 WLTENAARRLAEEN---IDTRIAPEIVRPSE-------------IDRQLGPDAVHQGMLA 105
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+A PL+ +I L Q + + LD++TDP N+GAI+RSA F +V A++S
Sbjct: 106 EADPLQGPRIDTLP-------QHGIVLVLDQITDPHNVGAILRSAAAFAVQAIVTTARHS 158
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIP 487
+GV++K++SG+LEL+ L N+ + L + G+ +G G AV L
Sbjct: 159 PEATGVLAKSASGALELVPLVLVQNLARALTELNDRGFLTVGLDSEGDDDLAAVELR--- 215
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
QP LVLG+EG GLR L ++C + R+ PG I
Sbjct: 216 --QPLALVLGAEGKGLRQLTRQTCNTVARLDMPGEI 249
>gi|291453079|ref|ZP_06592469.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
gi|359150277|ref|ZP_09183115.1| tRNA/rRNA methyltransferase [Streptomyces sp. S4]
gi|291356028|gb|EFE82930.1| tRNA/rRNA methyltransferase [Streptomyces albus J1074]
Length = 312
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ N+ + +D + AE GI + E + +L+ + HQGLVL
Sbjct: 90 LYVQQ---FIDNDERVRDA-----LALAAERGGIHLMEAPRPELDRMTNGLNHQGLVLQV 141
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D Q L V LD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 142 PPYEYAHAEDLTAAAYDAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 201
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PT 492
++ K+S+G+ + N+ + L + + G V+G + +A + ++P + P
Sbjct: 202 MTAGAWKSSAGAAARTPVARATNLTRTLEAYKKEGVVVVGLAADGEA-DVTDLPALEGPV 260
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
+V+GSEG GL LV +C VRIP +P G A E
Sbjct: 261 AIVVGSEGKGLSRLVGETCDIRVRIP--MP-----------------GGA---------E 292
Query: 553 SLNVSVAAGVLLH 565
SLN VAAG++L+
Sbjct: 293 SLNAGVAAGIVLY 305
>gi|153827413|ref|ZP_01980080.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
gi|149738686|gb|EDM53028.1| RNA methyltransferase, TrmH family [Vibrio cholerae MZO-2]
Length = 246
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/287 (29%), Positives = 130/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
L A +R+A G + V++ SAP++ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LXACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDGLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA G+ L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGICLFEAVRQRMAN 246
>gi|392939596|ref|ZP_10305240.1| rRNA methylase, putative, group 3 [Thermoanaerobacter siderophilus
SR4]
gi|392291346|gb|EIV99789.1| rRNA methylase, putative, group 3 [Thermoanaerobacter siderophilus
SR4]
Length = 247
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 116/232 (50%), Gaps = 29/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K++ +A+ GI + T L+ + G++ HQG+V + + + +L + +
Sbjct: 38 KIINLAKEAGIVVSTTDNDILSKLAGSQNHQGVVAVGAVYKYFDVDDLLEYAEQRKEKPF 97
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LDE+TDP NLGAIIRSA FG G+++ + + ++ V K S+G++E M + +N
Sbjct: 98 LLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSN 157
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + E G ++G V++ E+ P +V+GSEG G+ LV ++C +V+
Sbjct: 158 INNTIRGLKERGLWIVGTDVNAGK-SFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
IP G+I+ SLN SVAA +L++ +V
Sbjct: 217 IP-------MKGKIN---------------------SLNASVAASILIYQVV 240
>gi|149192027|ref|ZP_01870254.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
gi|148834128|gb|EDL51138.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio shilonii AK1]
Length = 245
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 129/281 (45%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D++ VL +G+S
Sbjct: 1 MSNEFIYGIHAVKAVLERDPVRFIEAYVLKG---------RQDER-LMPVLNELTQIGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ ++ L+ HQG++ P + + +LD I + Q L + LD VTDP N
Sbjct: 51 IQQMNRKTLDDKARGANHQGIIAKVKPAKQLNENDLDSILSQHAQPLLLI-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + S E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDRSAPLTATVSKVACGAAETVPLVRVTNLARTMRSLQEQG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W + G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 IW--IAGTAGEATHDIYQAKLDGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA+G+ L V
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAV 240
>gi|158521920|ref|YP_001529790.1| RNA methyltransferase [Desulfococcus oleovorans Hxd3]
gi|158510746|gb|ABW67713.1| RNA methyltransferase, TrmH family, group 3 [Desulfococcus
oleovorans Hxd3]
Length = 256
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 113/227 (49%), Gaps = 11/227 (4%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ PV+AA++A R+ L++ G ++ ++ +++ L+ AE I + E
Sbjct: 8 ETLYGIHPVMAAITAGRRKVDTLFIASG---------RETRQPHQQALQAAEQHNIPVNE 58
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
DL + G + HQG+ S V + +L D + VA D +TDP NLGA
Sbjct: 59 IPARDLEQMTGGKVHQGIAARVSVYPFVPLADLLAAVPSTDTPFILVA-DGLTDPHNLGA 117
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+ R+A G G+++ N+A + KAS+G+LE + + N+ + L + + G +
Sbjct: 118 LARTALCAGVHGLIIPKDNAASPTPAAVKASAGALEFLPVARETNIARVLDALKDAGLWI 177
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G + + G P LV+G EG G+R LV + C ++ IP
Sbjct: 178 AGLDGRGEQTIYDSDLTG-PLALVVGDEGRGIRRLVGQKCDFILSIP 223
>gi|341820667|emb|CCC56962.1| trmH family tRNA/rRNA methyltransferase [Weissella thailandensis
fsh4-2]
Length = 268
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/227 (29%), Positives = 119/227 (52%), Gaps = 13/227 (5%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG + AL KT E +++Q GL+ DK +E + +A+ G+ +++
Sbjct: 26 EFVYGHHAAVEALKGKT-EINKVWLQTGLA---------DKARHE-LTNLAKKRGLVMQD 74
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K L+ + HQG+VL + I EL +A++D+A ++ LD + DP NLG+
Sbjct: 75 APKAKLDELTNGENHQGVVLSIAAYAYATIDELFAKAAEKDEAPFFLVLDSIEDPHNLGS 134
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+R+A G G+++ + + L+ VV+K S+G++E + + N++Q + E G V
Sbjct: 135 IMRTADAAGIHGIIIPKRRAVQLTSVVAKTSTGAIEHVPVARVTNLVQTVEQLKERGVWV 194
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G ++ K T L++G+EG G+ PL+++S + IP
Sbjct: 195 FGTDMNGK--DYRRWDANGATALIIGNEGKGISPLLKKSVDETLAIP 239
>gi|282899513|ref|ZP_06307477.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
CS-505]
gi|281195392|gb|EFA70325.1| RNA methyltransferase TrmH, group 3 [Cylindrospermopsis raciborskii
CS-505]
Length = 320
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 44/292 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL+AL + R L++ +R + D + + VL+ +N G I E
Sbjct: 65 IYGRHPVLSALESH-RNLNRLWI--------TSRLRYDPRFHHLVLQAKDN-GTVIDEVD 114
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+ +P ++++L + + + VA D +TDP NLGAII
Sbjct: 115 PKRLDQITNGGNHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVA-DGITDPHNLGAII 173
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + + ++ V K ++G+LE + N+ + L E+G+ +
Sbjct: 174 RTAEAIGAQGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIY- 232
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
G+ ++ + PL+ + T+LV+GSEG GL L ++SC LV IP G P
Sbjct: 233 GTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTP--------- 283
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSST 583
SLN SVA G+ L+ + ++SN +++ T
Sbjct: 284 ---------------------SLNASVATGMALYEIYRQRLSNTHYLDKLHT 314
>gi|338813991|ref|ZP_08626050.1| tRNA/rRNA methyltransferase [Acetonema longum DSM 6540]
gi|337274016|gb|EGO62594.1| tRNA/rRNA methyltransferase [Acetonema longum DSM 6540]
Length = 250
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 110/191 (57%), Gaps = 2/191 (1%)
Query: 329 KKDKKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +++G ++++ +A+ G+ +++ L+ + HQG+V SP++ ++ +L
Sbjct: 32 KGERQGSVKEIIALAKEQGLVVQDVDSAKLDSLTQGLKHQGVVAATSPVDYAELSDLWAK 91
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+A +++ ++ LDE+ DP NLGAI+R+A GA GV++ + S PLSG V+K S+G++E
Sbjct: 92 AAAKNEPPFFILLDELEDPHNLGAILRTADAAGAHGVLIPKRRSCPLSGTVAKTSAGAIE 151
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+ + N+ Q + + G ++G ++ G P ++V+G+EG GL L
Sbjct: 152 HVPVARIGNVAQTIKELKKMGCWIVGADMAGSQNYYQADLTG-PIVVVIGNEGQGLSRLT 210
Query: 508 ERSCTHLVRIP 518
+ +C LV+IP
Sbjct: 211 KETCDFLVKIP 221
>gi|20808679|ref|NP_623850.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
gi|20517315|gb|AAM25454.1| rRNA methylase [Thermoanaerobacter tengcongensis MB4]
Length = 247
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/278 (26%), Positives = 132/278 (47%), Gaps = 41/278 (14%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
G+ +YG PV+ A+ + +E +YV K K++ MA+ GI +
Sbjct: 4 GDIIYGRNPVIEAIRS-GKEIEKIYVS-----------KTAGGNISKIIGMAKEAGIVVS 51
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
L + HQG+V + + + ++ + ++ + + LDE+TDP N+G
Sbjct: 52 TADSDTLKRLAQTPNHQGVVAVGALYKYFDVTDILNYAEEKKEKPFLLILDEITDPHNMG 111
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
AIIRSA FG GV++ + SA ++ V KAS+G++E +++ +N+ + E G
Sbjct: 112 AIIRSAEAFGVHGVIIPKRRSAGINATVVKASAGAVEYIKVAKVSNINSTIRDLKEKGLW 171
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
++G ++ E+ P LV+GSEG G+ LV +C +++IP G+I
Sbjct: 172 IIGTDAKAEK-SFEELDYDFPLALVIGSEGKGISRLVLENCDFVIKIP-------MKGKI 223
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+ SLN SVAA +L+++++
Sbjct: 224 N---------------------SLNASVAASILMYNIL 240
>gi|134298074|ref|YP_001111570.1| RNA methyltransferase [Desulfotomaculum reducens MI-1]
gi|134050774|gb|ABO48745.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
reducens MI-1]
Length = 243
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 29/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++K+A+ I ++ + L+ + PHQG++ A+ + V+++EL I+ + Q
Sbjct: 37 EIVKLAKQNNIPLQMVERSHLDKMNPGVPHQGVIAYAAAKQYVELEELLEIARAKGQDPF 96
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LDE+ DP NLGAI+R+A GA GV++ + S L+ V+KAS+G++E + + N
Sbjct: 97 IIMLDEINDPHNLGAIMRTADAAGAHGVIIPQRRSVALTSTVAKASAGAVEYVPVARVTN 156
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ Q + + G V+G + + + G P +LV+G EG GL L++ C LVR
Sbjct: 157 LDQTIRQLKDEGLWVVGADMDGSEIYWDAKLTG-PLLLVIGGEGKGLGRLIKERCDMLVR 215
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+P AG V SLN SVAA +L++ +V
Sbjct: 216 LP-------MAGR---------------------VGSLNASVAAALLVYEVV 239
>gi|315605244|ref|ZP_07880290.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315313061|gb|EFU61132.1| RNA methyltransferase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 325
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 118/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A MG + E ++ DL++ HQG+ ++ E +L S
Sbjct: 110 KDDR-VEEVVRLASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGSL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVE 508
+ N+++ L + G+ V+G A PL + P ++V G+EG GL LV
Sbjct: 229 PVARATNLVRALEEAKRAGYFVVGLDGGGDA-PLRGLSLADGPLVVVTGAEGAGLSRLVR 287
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V +IP+ T VESLN +VA G+ L+ +
Sbjct: 288 ETCDQIV----SIPIAST------------------------VESLNAAVATGIALYEV 318
>gi|303231482|ref|ZP_07318212.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-049-V-Sch6]
gi|302513825|gb|EFL55837.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-049-V-Sch6]
Length = 245
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 35/241 (14%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K K G ++ +A++ GI ++ T +N + PHQG++ + +E + E+ S
Sbjct: 30 KIKTGLSDIVGLAKSKGIEVRPTPVKQMNRYETDVPHQGVIAFVNAVEFKDLGEVLQESN 89
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
E+ L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E +
Sbjct: 90 HEN--PLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAVEQI 147
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
L N+ Q + + G+ VLG + L E PT+LV+G+EG G+ +V+
Sbjct: 148 SLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRT-LYEADLTIPTVLVIGNEGKGISRVVKE 206
Query: 510 SCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C LV IP GN+ SLN SVAA +L++
Sbjct: 207 ACDFLVTIPMYGNL------------------------------NSLNASVAAAILMYEA 236
Query: 568 V 568
V
Sbjct: 237 V 237
>gi|377572932|ref|ZP_09802010.1| putative rRNA methyltransferase [Mobilicoccus pelagius NBRC 104925]
gi|377538383|dbj|GAB47175.1| putative rRNA methyltransferase [Mobilicoccus pelagius NBRC 104925]
Length = 325
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/236 (31%), Positives = 113/236 (47%), Gaps = 40/236 (16%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQAS 395
+ +K+A GI++ ET + +L+ + HQGL L E +L DP S
Sbjct: 119 EAIKIAGERGIAMLETPRGELDRLTDGATHQGLALQVPAYEYADPADLVDPQSPG---VP 175
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L VALD +TDP+NLGAI+RS FG GVV+ + S ++ K S+G+ + + +
Sbjct: 176 LIVALDGITDPRNLGAIVRSVAAFGGQGVVVPERRSVGMTASAWKTSAGAAARVPVAQAS 235
Query: 456 NMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSC 511
N+++ L + + G+ V+G G VS + L +P ++V+GSEG GL LV +C
Sbjct: 236 NLVRVLEAYQKQGFFVVGLDMEGDVSLPDLELAT----EPLVIVVGSEGKGLSRLVRETC 291
Query: 512 THLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ IP AVESLNV +A GV L+ +
Sbjct: 292 DQIASIP----------------------------MAAAVESLNVGIATGVALYEV 319
>gi|326332067|ref|ZP_08198352.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
bacterium Broad-1]
gi|325950205|gb|EGD42260.1| RNA methyltransferase, TrmH family, group 3 [Nocardioidaceae
bacterium Broad-1]
Length = 318
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 83/261 (31%), Positives = 127/261 (48%), Gaps = 47/261 (18%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+YV EG ++D + E L +A GIS+ E +K +L+ + G HQGL
Sbjct: 93 IYVAEG--------AERDGRLREAFL-LASEKGISLLEVTKVELDRLTGFNGHQGLAARI 143
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
E +L +A+ + L VALD+VTDP+NLGAI+RSA FGA GVV+ + +A
Sbjct: 144 PAYEYAHADDLIDRAAEIGEKPLIVALDQVTDPRNLGAIVRSAAAFGAHGVVIPERRAAG 203
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEI--PPG-- 489
++ K S+G+ + + N+ + L + + G V+G + + L E+ P G
Sbjct: 204 MTAAAWKTSAGAASRIPVAQTVNLTRQLKAYQDAGCMVVGLDMEGD-ITLPELGAPDGLA 262
Query: 490 -QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P ++V+G+EG GL LV+ +C +V IP
Sbjct: 263 DGPLVIVVGAEGGGLSRLVQETCDQIVSIP------------------------------ 292
Query: 549 MA--VESLNVSVAAGVLLHHL 567
MA VESLN VAA V+L+ +
Sbjct: 293 MANSVESLNAGVAASVVLYAV 313
>gi|386852952|ref|YP_006270965.1| TrmH family RNA methyltransferase [Actinoplanes sp. SE50/110]
gi|359840456|gb|AEV88897.1| RNA methyltransferase, TrmH family [Actinoplanes sp. SE50/110]
Length = 375
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 127/281 (45%), Gaps = 43/281 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L G PV+ AL A+ ALYV +G+ + ++++ A + GI I E S
Sbjct: 134 LLGRNPVVEALRAQV-SATALYVVQGIDIDER---------VAEIVRTAGDRGIPILEIS 183
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+++L+ + G HQG+ L P +L S E A L VALD VTDP+N+GA+I
Sbjct: 184 RNELDRMTGGVLHQGIGLQVPPFAYEDFDDLVAASL-EQTAPLLVALDGVTDPRNVGAVI 242
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RS FG GV + + +A ++ + S+G+ + + N+ + + S+ + G+ +G
Sbjct: 243 RSVAAFGGHGVFMTERRAAGITATAWRTSAGAAARVPVSQVVNLTRAIKSAQKQGFTAIG 302
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ P I+V+GSEG GL LV +C V IP
Sbjct: 303 LDADGETDLYQLEAAIGPLIVVVGSEGRGLSRLVGETCDLRVSIP--------------- 347
Query: 534 DADGNHGSAEQFQSFMA--VESLNVSVAAGVLLHHLVGHQV 572
MA VESLN SVAA V L + +V
Sbjct: 348 ---------------MASDVESLNASVAAAVTLAEVARRRV 373
>gi|422341944|ref|ZP_16422884.1| RNA methyltransferase [Treponema denticola F0402]
gi|325474012|gb|EGC77200.1| RNA methyltransferase [Treponema denticola F0402]
Length = 258
Score = 102 bits (254), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 73/239 (30%), Positives = 115/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + I++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKIEKQDNQFLDSITKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E + V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++GSEG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAVGKALPDLTFP--KKTVLIMGSEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|448083824|ref|XP_004195451.1| Piso0_004838 [Millerozyma farinosa CBS 7064]
gi|359376873|emb|CCE85256.1| Piso0_004838 [Millerozyma farinosa CBS 7064]
Length = 440
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 104/393 (26%), Positives = 180/393 (45%), Gaps = 85/393 (21%)
Query: 222 YAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEA 281
+ + G EE E + + RN + K + E + Q+ ++E + E+
Sbjct: 78 FMRKYGNISEERREALQRKVERQRRARNMRKEHTKDQREDFKVQKDPKKEPNNEPARVES 137
Query: 282 APSTVPKMVGEGLYGVGPVLAALSAKTRE-FYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
+ + E LYG V AALSA+ RE F L VQ + + V K
Sbjct: 138 WDRGIGNPLSEYLYGTHAVFAALSARRRESFSKLLVQSSRVIPGD------------VAK 185
Query: 341 MAENMGISI-KETSKHDLNMVVGNRPHQGLVLDASPL------------------EMVKI 381
+A+ +G+ + ++ SK +LN + N H G++L+ PL E+ I
Sbjct: 186 VAKELGLKVEQQLSKRELNHLTNNGVHNGVILETKPLVPPLLGALGDCDGSDATYEVSTI 245
Query: 382 KELDPISADEDQAS-------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
EL +A +A L + +D +TDPQN+GAI RSA++ GA +++ +
Sbjct: 246 NELYGTTAQVQRAVARAAAAPAEPAFPLGIYVDSITDPQNIGAIARSAFYLGADFLIVPS 305
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW--------------RVLGG 474
N+A + V +KA++G+L+L++L +N + F+ +S+ +GW R +
Sbjct: 306 HNTAKIGPVAAKAAAGALDLLDLYQVDNPLHFIDASSRHGWSIVSSDASPHVHPNRKIAS 365
Query: 475 SVSSKAVPLNEIPP---GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
++++KA+ + E+P P +LV+GSEG G+R ++ ++V +
Sbjct: 366 TLATKAIEVGELPSILRSSPVLLVMGSEGDGIRANIKLKSDYIV-------------SLH 412
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A NH V+SLNVSVA+ +LL
Sbjct: 413 QQRAIHNH----------IVDSLNVSVASALLL 435
>gi|18311406|ref|NP_563340.1| TrmH family RNA methyltransferase [Clostridium perfringens str. 13]
gi|168214713|ref|ZP_02640338.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens CPE str. F4969]
gi|182626981|ref|ZP_02954711.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens D str. JGS1721]
gi|18146090|dbj|BAB82130.1| probable tRNA/rRNA methyltransferase [Clostridium perfringens str.
13]
gi|170713821|gb|EDT26003.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens CPE str. F4969]
gi|177907651|gb|EDT70275.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens D str. JGS1721]
Length = 289
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K+L +A+ I +KE + L+++ + HQG++ +P + ++++ ++ +++
Sbjct: 81 KILGLAKEKKIVVKEVDRKKLDLMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPF 140
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP NLG+I+R+A GA G+++ + + ++G V KAS G++E M++ N
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTN 200
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + N + G ++ + G I ++GSEG G+ L ++ C LV+
Sbjct: 201 INNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI-IIGSEGRGMSNLTKKKCDKLVK 259
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
IP G+I+ SLN SVA G++++ ++ ++
Sbjct: 260 IP-------MVGKIN---------------------SLNASVAGGIMMYEVLKSRI 287
>gi|23502131|ref|NP_698258.1| RNA methyltransferase [Brucella suis 1330]
gi|161619208|ref|YP_001593095.1| RNA methyltransferase [Brucella canis ATCC 23365]
gi|225852749|ref|YP_002732982.1| TrmH family RNA methyltransferase [Brucella melitensis ATCC 23457]
gi|256263765|ref|ZP_05466297.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|256369676|ref|YP_003107186.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
4915]
gi|260566224|ref|ZP_05836694.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|261214245|ref|ZP_05928526.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|261219597|ref|ZP_05933878.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|261222409|ref|ZP_05936690.1| RNA methyltransferase [Brucella ceti B1/94]
gi|261314030|ref|ZP_05953227.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261317883|ref|ZP_05957080.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261322092|ref|ZP_05961289.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|261325334|ref|ZP_05964531.1| RNA methyltransferase [Brucella neotomae 5K33]
gi|261752558|ref|ZP_05996267.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261755216|ref|ZP_05998925.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|261758439|ref|ZP_06002148.1| RNA methyltransferase [Brucella sp. F5/99]
gi|265988911|ref|ZP_06101468.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|265995162|ref|ZP_06107719.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|265998376|ref|ZP_06110933.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|294852588|ref|ZP_06793261.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|306844157|ref|ZP_07476750.1| RNA methyltransferase, TrmH family, group 3 [Brucella inopinata
BO1]
gi|340790870|ref|YP_004756335.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|376280925|ref|YP_005154931.1| RNA methyltransferase [Brucella suis VBI22]
gi|384224919|ref|YP_005616083.1| RNA methyltransferase [Brucella suis 1330]
gi|384445303|ref|YP_005604022.1| TrmH family RNA methyltransferase [Brucella melitensis NI]
gi|23348093|gb|AAN30173.1| RNA methyltransferase, TrmH family, group 3 [Brucella suis 1330]
gi|161336019|gb|ABX62324.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis ATCC
23365]
gi|225641114|gb|ACO01028.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
ATCC 23457]
gi|255999838|gb|ACU48237.1| RNA methyltransferase, TrmH family, group 3 [Brucella microti CCM
4915]
gi|260155742|gb|EEW90822.1| RNA methyltransferase [Brucella suis bv. 4 str. 40]
gi|260915852|gb|EEX82713.1| RNA methyltransferase [Brucella abortus bv. 3 str. Tulya]
gi|260920993|gb|EEX87646.1| RNA methyltransferase [Brucella ceti B1/94]
gi|260924686|gb|EEX91254.1| RNA methyltransferase [Brucella ceti M13/05/1]
gi|261294782|gb|EEX98278.1| RNA methyltransferase [Brucella ceti M644/93/1]
gi|261297106|gb|EEY00603.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|261301314|gb|EEY04811.1| RNA methyltransferase [Brucella neotomae 5K33]
gi|261303056|gb|EEY06553.1| RNA methyltransferase [Brucella pinnipedialis M163/99/10]
gi|261738423|gb|EEY26419.1| RNA methyltransferase [Brucella sp. F5/99]
gi|261742311|gb|EEY30237.1| RNA methyltransferase [Brucella suis bv. 5 str. 513]
gi|261744969|gb|EEY32895.1| RNA methyltransferase [Brucella suis bv. 3 str. 686]
gi|262552844|gb|EEZ08834.1| RNA methyltransferase [Brucella ceti M490/95/1]
gi|262766275|gb|EEZ12064.1| RNA methyltransferase [Brucella melitensis bv. 3 str. Ether]
gi|263093865|gb|EEZ17827.1| RNA methyltransferase [Brucella melitensis bv. 2 str. 63/9]
gi|264661108|gb|EEZ31369.1| RNA methyltransferase [Brucella pinnipedialis M292/94/1]
gi|294821177|gb|EFG38176.1| RNA methyltransferase [Brucella sp. NVSL 07-0026]
gi|306275432|gb|EFM57169.1| RNA methyltransferase, TrmH family, group 3 [Brucella inopinata
BO1]
gi|340559329|gb|AEK54567.1| RNA methyltransferase [Brucella pinnipedialis B2/94]
gi|343383099|gb|AEM18591.1| RNA methyltransferase [Brucella suis 1330]
gi|349743294|gb|AEQ08837.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
NI]
gi|358258524|gb|AEU06259.1| RNA methyltransferase [Brucella suis VBI22]
Length = 286
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|110803075|ref|YP_699682.1| RNA methyltransferase [Clostridium perfringens SM101]
gi|168206818|ref|ZP_02632823.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens E str. JGS1987]
gi|168217917|ref|ZP_02643542.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens NCTC 8239]
gi|169344116|ref|ZP_02865099.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens C str. JGS1495]
gi|422347488|ref|ZP_16428400.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens WAL-14572]
gi|110683576|gb|ABG86946.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens SM101]
gi|169297727|gb|EDS79826.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens C str. JGS1495]
gi|170661756|gb|EDT14439.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens E str. JGS1987]
gi|182380031|gb|EDT77510.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens NCTC 8239]
gi|373223942|gb|EHP46283.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
perfringens WAL-14572]
Length = 289
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 29/236 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K+L +A+ I +KE + L+++ + HQG++ +P + ++++ ++ +++
Sbjct: 81 KILGLAKEKKIVVKEVDRKKLDLMSETKAHQGVIAQITPFKYSTVEDILDLAKSKNEDPF 140
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP NLG+I+R+A GA G+++ + + ++G V KAS G++E M++ N
Sbjct: 141 IVILDELEDPHNLGSIVRTAELCGAHGIIIPKRRNVGVTGTVYKASVGAIEHMKIAKVTN 200
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + N + G ++ + G I ++GSEG G+ L ++ C LV+
Sbjct: 201 INNAIEELKANNVWIYGADIAGEEYSYETNFKGACGI-IIGSEGRGMSNLTKKKCDKLVK 259
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
IP G+I+ SLN SVA G++++ ++ ++
Sbjct: 260 IP-------MVGKIN---------------------SLNASVAGGIMMYEVLKSRI 287
>gi|282896448|ref|ZP_06304469.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
gi|281198736|gb|EFA73616.1| RNA methyltransferase TrmH, group 3 [Raphidiopsis brookii D9]
Length = 324
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 139/292 (47%), Gaps = 44/292 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL+AL + R L++ +R + D + + VL+ +N G I E
Sbjct: 69 IYGRYPVLSALESH-RNLNRLWI--------TSRLRYDPRFHHLVLQAKDN-GTVIDEVD 118
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+ +P ++++L + + + VA D +TDP NLGAII
Sbjct: 119 PKRLDQITNGANHQGVAAQIAPYTYTELEDLISQAQTVSEPVIVVA-DGITDPHNLGAII 177
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + + ++ V K ++G+LE + N+ + L E+G+ +
Sbjct: 178 RTAEAIGAQGLVIPQRRAVGITSTVVKVAAGALENFSVARVVNLSRALEQLKESGFWIY- 236
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
G+ ++ + PL+ + T+LV+GSEG GL L ++SC LV IP G P
Sbjct: 237 GTAATGSEPLHSVRFTGSTVLVVGSEGEGLSMLTQKSCDVLVSIPLQGKTP--------- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSST 583
SLN SVA G+ L+ + ++SN +++ T
Sbjct: 288 ---------------------SLNASVATGMALYEIYRQRLSNTHYLDKLHT 318
>gi|119487909|ref|ZP_01621406.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
gi|119455485|gb|EAW36623.1| tRNA/rRNA methyltransferase [Lyngbya sp. PCC 8106]
Length = 295
Score = 102 bits (253), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 82/276 (29%), Positives = 128/276 (46%), Gaps = 43/276 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG VLAAL + R +++ L S+NR ++K L A+ G I S
Sbjct: 53 IYGRHTVLAALENE-RSLNRIWMVP--QLQSDNR-------FQKGLSTAKANGTLIDRVS 102
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+V SP ++ EL ++ + V + +TDP NLGAII
Sbjct: 103 NQRLDQIAPGTNHQGIVAQVSPYAYKELSELIDLAKAASSEPVIVMAEGLTDPHNLGAII 162
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R++ G SG++L + + ++ V K ++G+LE + N+ + L + G+ + G
Sbjct: 163 RTSEAIGVSGLILPQRRAVGITSTVMKVAAGALETFPVARVVNLNRALEELKQAGFWIYG 222
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
S ++ PL + P +LV+GSEG GL L+E+SC LV IP G P
Sbjct: 223 TSATADQ-PLYTVKFSGPVVLVVGSEGQGLTRLIEQSCDILVSIPLVGQTP--------- 272
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
SLNVSVA G+ L+ +
Sbjct: 273 ---------------------SLNVSVATGMALYEI 287
>gi|421741574|ref|ZP_16179762.1| rRNA methylase, putative, group 3 [Streptomyces sp. SM8]
gi|406689972|gb|EKC93805.1| rRNA methylase, putative, group 3 [Streptomyces sp. SM8]
Length = 312
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 123/253 (48%), Gaps = 38/253 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ N+ + +D + AE GI + E + +L+ + HQGLVL
Sbjct: 90 LYVQQ---FIDNDERVRDA-----LALAAERGGIHLMEAPRPELDRMTNGLNHQGLVLQV 141
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D Q L V LD VTDP+NLGA++RS FG GVV+ + +A
Sbjct: 142 PPYEYAHAEDLTAAAYDAGQDPLIVLLDGVTDPRNLGAVVRSVSAFGGHGVVVPERRAAG 201
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PT 492
++ K+S+G+ + N+ + L + + G V+G + +A + ++P + P
Sbjct: 202 MTAGAWKSSAGAAARTPVARATNLTRTLEAYKKEGVVVVGLAADGEA-DVTDLPALEGPV 260
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
+V+GSEG GL LV +C VRIP +P G A E
Sbjct: 261 AVVVGSEGKGLSRLVGETCDIRVRIP--MP-----------------GGA---------E 292
Query: 553 SLNVSVAAGVLLH 565
SLN VAAG++L+
Sbjct: 293 SLNAGVAAGIVLY 305
>gi|347534163|ref|YP_004840833.1| trmH family tRNA/rRNA methyltransferase yacO [Lactobacillus
sanfranciscensis TMW 1.1304]
gi|345504219|gb|AEN98901.1| Putative trmH family tRNA/rRNA methyltransferase yacO
[Lactobacillus sanfranciscensis TMW 1.1304]
Length = 250
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/275 (25%), Positives = 133/275 (48%), Gaps = 42/275 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G P +AAL + ++ +++Q G+S KD + + +LK+A+ + I
Sbjct: 8 IIGRHPAVAALRNQEQDINKVFLQNGIS--------KDDETVQTILKLAKGRHLVISNVP 59
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L+++ ++ HQG++L + + I +L +A +++A +V LD + DP NLG+I+
Sbjct: 60 KSKLDLMSDHQNHQGVMLAIAAFKYATIDDLFENAAKKNEAPFFVILDNIADPHNLGSIL 119
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G GV++ S L+ V+K S+G++E + + N++ + + G V G
Sbjct: 120 RTADAAGVHGVIIPKHRSVGLTSTVAKTSAGAIERVPVAKVTNLVNTVNDLKDRGVWVFG 179
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
+ + + L++GSEG G+ PL+++ ++ IP GNI
Sbjct: 180 TDM--QGTDYRRWDAEGASALIIGSEGKGISPLLKKQVDEMLTIPMIGNI---------- 227
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
+SLN SVAAG+L++
Sbjct: 228 --------------------QSLNASVAAGLLMYQ 242
>gi|428208957|ref|YP_007093310.1| TrmH family RNA methyltransferase [Chroococcidiopsis thermalis PCC
7203]
gi|428010878|gb|AFY89441.1| RNA methyltransferase, TrmH family, group 3 [Chroococcidiopsis
thermalis PCC 7203]
Length = 344
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 130/287 (45%), Gaps = 43/287 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL AL + R+ L+V R + D + + +L+ A+ G I E
Sbjct: 88 IYGRHPVLTALETQ-RQLNRLWV--------TARLRYDHR-FHSLLQQAKENGTVIDEVE 137
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + + HQG+ +P + +++ L + Q + VA D +TDP NLGAII
Sbjct: 138 PKRLDQITHHANHQGIAAQVAPYDYLELGGLIDKAKSTSQQPVIVAADGITDPHNLGAII 197
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + + ++ V K ++G+LE + N + L G+ V G
Sbjct: 198 RTAEAIGAQGLVIPQRRAVGITSTVMKVAAGALETFSVARVINFSRALEELKAAGFWVYG 257
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
++ ++ + + P +LV+GSEG GL +R C LV IP GN P
Sbjct: 258 TALEAEQ-SIQTVKFSGPIVLVVGSEGEGLSLSAQRCCDLLVSIPLSGNTP--------- 307
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHI 578
SLN SVA G+ L+ + + N +++
Sbjct: 308 ---------------------SLNASVATGMALYEIFRQRWQNVNYV 333
>gi|225627720|ref|ZP_03785757.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
Cudo]
gi|376276136|ref|YP_005116575.1| trmH family RNA methyltransferase [Brucella canis HSK A52141]
gi|225617725|gb|EEH14770.1| RNA methyltransferase, TrmH family, group 3 [Brucella ceti str.
Cudo]
gi|363404703|gb|AEW14998.1| RNA methyltransferase, TrmH family, group 3 [Brucella canis HSK
A52141]
Length = 303
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 32 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 89
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 90 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 137
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 138 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 190
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 191 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 249
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 250 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 280
>gi|449102701|ref|ZP_21739449.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
AL-2]
gi|448966290|gb|EMB46948.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
AL-2]
Length = 258
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + +++ L+ + P H+G+VL + K +D A
Sbjct: 44 KKILEAARKLNLKVEKQDNQFLDSITKTLPEQLRDHRGIVLVTEAEDQKKGMSIDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E + V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++G+EG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPNLTFP--KKTVLIMGNEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|212212578|ref|YP_002303514.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
gi|212010988|gb|ACJ18369.1| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii CbuG_Q212]
Length = 270
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/274 (28%), Positives = 127/274 (46%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V A L A + LYVQE +D + + +++ A+ +G+ + S
Sbjct: 27 IYGIHAVSAVLDAAPQRIVKLYVQE----------NRDDQRLQSLVEKAKGLGVKVILLS 76
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +
Sbjct: 77 RTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACL 135
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G
Sbjct: 136 RSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVG 195
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 196 TAVEAETL-IQEIDLTGDIAIVLGSEGGGLRRLTKERCDFLAQIP--------------- 239
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GS VESLNVSVA G+ L+ +
Sbjct: 240 ----LRGS---------VESLNVSVACGICLYEV 260
>gi|425734465|ref|ZP_18852784.1| TrmH family RNA methyltransferase [Brevibacterium casei S18]
gi|425481732|gb|EKU48891.1| TrmH family RNA methyltransferase [Brevibacterium casei S18]
Length = 313
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 110/207 (53%), Gaps = 11/207 (5%)
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
ALYV + S++R K+ + +A GIS+ E S+ DL+ + + HQG+ L
Sbjct: 90 ALYVAS--RIDSDDRVKE-------AISLAAGRGISMLEASRADLDRLTDDAIHQGIALQ 140
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
P E ++L +A+ + L VALD VTDP+NLGAI+RS FG GV++ + +A
Sbjct: 141 IPPYEYADPRDLLEFAAERAETPLIVALDGVTDPRNLGAIVRSVAAFGGHGVIIPERRAA 200
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-P 491
++ K S+G+ +++ N+ + + + G V+G + + V L E+ + P
Sbjct: 201 SMTAAAWKTSAGAASRIKVAQVVNLARAIDELKKQGVFVVGLDMDGE-VDLPELTFSRDP 259
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG GL L+ C +V IP
Sbjct: 260 LCIVVGSEGKGLSRLIADKCDQIVSIP 286
>gi|384211621|ref|YP_005600703.1| TrmH family RNA methyltransferase [Brucella melitensis M5-90]
gi|384408727|ref|YP_005597348.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
gi|326409274|gb|ADZ66339.1| TrmH family RNA methyltransferase [Brucella melitensis M28]
gi|326538984|gb|ADZ87199.1| RNA methyltransferase, TrmH family, group 3 [Brucella melitensis
M5-90]
Length = 303
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 32 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 89
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 90 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 137
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 138 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 190
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 191 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 249
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 250 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 280
>gi|320354874|ref|YP_004196213.1| TrmH family RNA methyltransferase [Desulfobulbus propionicus DSM
2032]
gi|320123376|gb|ADW18922.1| RNA methyltransferase, TrmH family, group 3 [Desulfobulbus
propionicus DSM 2032]
Length = 269
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/206 (32%), Positives = 109/206 (52%), Gaps = 5/206 (2%)
Query: 317 QEGLSLSSNNRKKKDKKG--YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDAS 374
QEG S +K K G ++++ A++ I+++ + V N HQG+V S
Sbjct: 39 QEGCGGISEILVQKGKAGPRLQQIIDHAKSHAIAVRFVDGARMG-VPKNCRHQGVVARQS 97
Query: 375 PLEMVKIKELDPISADEDQASL--WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
++ +++L DE+Q + + LD + DP+N+G+I+RSA G S V+L + S
Sbjct: 98 EARLLSLEDLLAGITDEEQTTQARILVLDSLQDPRNVGSILRSALAAGFSRVILTRERSV 157
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
PL+G V++ S+G++ + L N++ L E G+ + G + A P+ P
Sbjct: 158 PLTGTVARTSAGAVSHLRLCQVVNLVDALNRLKEQGFWIFGAIAEANAAPIYTTDFSGPI 217
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIP 518
LV+GSEG G+RPLV + C LV IP
Sbjct: 218 CLVIGSEGKGIRPLVRKQCDVLVTIP 243
>gi|427394294|ref|ZP_18887731.1| RNA methyltransferase, TrmH family, group 3 [Alloiococcus otitis
ATCC 51267]
gi|425730089|gb|EKU92934.1| RNA methyltransferase, TrmH family, group 3 [Alloiococcus otitis
ATCC 51267]
Length = 248
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 121/227 (53%), Gaps = 13/227 (5%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G PVL AL + R+ +++Q+G + +++ A+ I +
Sbjct: 7 EIVFGRHPVLEALKS-GRQVNKVFIQDGAG----------AQALKEIHHFAKEKKIQVSF 55
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K+ L+ +V + HQG+VL ASP+ I +L ++ D+++ ++ LD + DP NLG+
Sbjct: 56 APKNKLDQLVSGQNHQGVVLTASPVAYASIDDLYKVARDKEEDPFFLILDGIEDPHNLGS 115
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+R+A G G+++ + + L+ VSKAS+G++E + + +N+ Q + ++G+ +
Sbjct: 116 ILRTADASGVHGLIIPNRRAVGLTATVSKASTGAIEHVPVARVSNINQTIKKLKDDGFWI 175
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G V + + P LV+G+EG G+ LV+ + ++ IP
Sbjct: 176 FGTDVEGE--DYRQWNVSGPIALVVGNEGQGISHLVKENVDQMLTIP 220
>gi|408501883|ref|YP_006865802.1| tRNA/rRNA methyltransferase protein [Bifidobacterium asteroides
PRL2011]
gi|408466707|gb|AFU72236.1| tRNA/rRNA methyltransferase protein [Bifidobacterium asteroides
PRL2011]
Length = 330
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 79/270 (29%), Positives = 124/270 (45%), Gaps = 50/270 (18%)
Query: 327 RKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDP 386
R + D + E ++++A G+++ E + ++N + + HQG+ L P + ++ L
Sbjct: 94 RMEHDDRTRE-IVRLAGQEGLNLLEADRLEMNRIARSGSHQGVALKVRPYQYASLQSL-- 150
Query: 387 ISADE-----------DQAS------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAK 429
AD DQA+ L++ALD VTDPQNLGA+IRSA FGASGV+L +
Sbjct: 151 --ADRAEKHAAALEGADQATRVAARPLFIALDGVTDPQNLGAVIRSAAAFGASGVILPER 208
Query: 430 NSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPG 489
SA ++ K S+G+ + + N+ + + E G+ +G +
Sbjct: 209 RSATVTAAAWKVSAGAAAHLPVARVVNLTKAIQGLKERGYYTVGLDGAGNTTVGETGFET 268
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P ++VLGSEG GL LV C L IP +
Sbjct: 269 DPLVVVLGSEGKGLSRLVREHCDALASIPIS----------------------------S 300
Query: 550 AVESLNVSVAAGVLLHHLVGHQVSNNSHIE 579
+VESLN SVAAG+ L+ + + SH +
Sbjct: 301 SVESLNASVAAGISLYAIATARRRPASHTQ 330
>gi|394987671|ref|ZP_10380510.1| hypothetical protein SCD_00070 [Sulfuricella denitrificans skB26]
gi|393792890|dbj|GAB70149.1| hypothetical protein SCD_00070 [Sulfuricella denitrificans skB26]
Length = 245
Score = 102 bits (253), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 131/277 (47%), Gaps = 41/277 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M +YG V++ + + +Y+ +R+++D + + +L++AE G+
Sbjct: 1 MADNFIYGFHAVVSRIRQDAKSVTEVYL---------HRERQDPRARD-LLQLAEEQGVR 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
+ +H L+ + GN HQG+V A + + ++ + + + +L + LD V DP N
Sbjct: 51 VIFMERHRLDGMAGNDKHQGVV--AKVVAAREYHDVFDVLENLKEPALLLVLDGVQDPHN 108
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R A GA VV+ +A L+ V K +SG+ E + N+ + L E G
Sbjct: 109 LGACLRVADAMGAHAVVVPKDRAAGLNATVRKVASGAAETVPFVTVTNLARSLREIKEAG 168
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
V+G + +++ + G PT VLG+EG GLR L +C L+RIP
Sbjct: 169 VWVVGAAGEAESDLFSAKLEG-PTAWVLGAEGEGLRRLTRETCDQLIRIP---------- 217
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
F +VESLNVSVA+G+ L+
Sbjct: 218 ------------------MFGSVESLNVSVASGICLY 236
>gi|154684614|ref|YP_001419775.1| hypothetical protein RBAM_001210 [Bacillus amyloliquefaciens FZB42]
gi|154350465|gb|ABS72544.1| YacO [Bacillus amyloliquefaciens FZB42]
Length = 249
Score = 101 bits (252), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 122/232 (52%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V+++A+ G++I+ + L+ +V + HQG+V + E ++ EL + + ++
Sbjct: 39 QQVMELAKKRGVTIQFVPRKKLDQMVEGQ-HQGVVAQVAAYEYAQLDELYKRAEERNEQP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+ DP NLG+I+R+A GA G+++ + + L+ V+KAS+G++E + +
Sbjct: 98 FFLILDELEDPHNLGSIMRTADAVGAHGIMIPKRRAVGLTSTVAKASTGAIEHIPVVKVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L+
Sbjct: 158 NLARTLDEMKERGIWVVGTDASARE-DYRSMDGKMPLALVIGSEGRGMGRLVKEKCDFLI 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P AG+ V SLN SVAAG+L++ +
Sbjct: 217 KLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>gi|374619008|ref|ZP_09691542.1| 23S rRNA Gm-2251 2'-O-methyltransferase [gamma proteobacterium
HIMB55]
gi|374302235|gb|EHQ56419.1| 23S rRNA Gm-2251 2'-O-methyltransferase [gamma proteobacterium
HIMB55]
Length = 247
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 87/285 (30%), Positives = 133/285 (46%), Gaps = 54/285 (18%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E YG+ V L AL +Q S N K+ + +L +A+N G+++
Sbjct: 3 ETAYGIHAVDVILRRSPERIIALSIQ-----SDRNDKR-----IQGLLSLAQNQGVAVDR 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADED--------QASLWVALDEV 403
SK DL+ +V R HQG+V ++K ++ D A+ D L + LD V
Sbjct: 53 VSKADLDEMVSER-HQGVV------AVIKPRQADGGVAERDLSGYLKGIDCPLVLVLDGV 105
Query: 404 TDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVS 463
TDP NLGA +RSA G + V++ NSA L+ V K +SG+ +++ L N+ + L S
Sbjct: 106 TDPHNLGACLRSADAAGVAAVIVPKDNSAELNAVARKVASGAADVIPLVRVTNLARTLRS 165
Query: 464 SAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPV 523
E G ++G + + + ++ PT LV+G+EG G+R L +C LV++P
Sbjct: 166 LKELGIWIVGTTGEADTLVYDQ-DLSIPTALVMGAEGPGMRRLTTEACDFLVKLP----- 219
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AG+ V SLNVSVA G+ L V
Sbjct: 220 --MAGD---------------------VSSLNVSVATGICLFEAV 241
>gi|303228929|ref|ZP_07315739.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-134-V-Col7a]
gi|302516343|gb|EFL58275.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
ACS-134-V-Col7a]
Length = 245
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 35/241 (14%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K K G ++ +A++ GI ++ T +N + PHQG++ + +E + E+ S
Sbjct: 30 KIKTGLSDIVGLAKSKGIEVRPTPVKQMNRYETDVPHQGVIAFVNAVEFKDLGEVLQESN 89
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
E+ L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E +
Sbjct: 90 HEN--PLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAVEQI 147
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
L N+ Q + + G+ VLG + L E PT+LV+G+EG G+ +V+
Sbjct: 148 PLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRT-LYEADLTIPTVLVIGNEGKGISRVVKE 206
Query: 510 SCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C LV IP GN+ SLN SVAA +L++
Sbjct: 207 ACDFLVTIPMYGNL------------------------------NSLNASVAAAILMYEA 236
Query: 568 V 568
V
Sbjct: 237 V 237
>gi|408501865|ref|YP_006865784.1| tRNA/rRNA methyltransferase protein [Bifidobacterium asteroides
PRL2011]
gi|408466689|gb|AFU72218.1| tRNA/rRNA methyltransferase protein [Bifidobacterium asteroides
PRL2011]
Length = 341
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 77/266 (28%), Positives = 124/266 (46%), Gaps = 42/266 (15%)
Query: 327 RKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDP 386
R + D + E ++++A G+++ E + ++N + + HQG+ L P + ++ L
Sbjct: 105 RMEHDDRTRE-IVRLAGQEGLNLLEADRLEMNRIARSGSHQGVALKVRPYQYASLQSLAD 163
Query: 387 ISADE-------DQAS------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+ DQA+ L++ALD VTDPQNLGA+IRSA FGASGV+L + SA
Sbjct: 164 RAEKHAAALEGADQATRVAARPLFIALDGVTDPQNLGAVIRSAAAFGASGVILPERRSAS 223
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K S+G+ + + N+ + + E G+ +G + P +
Sbjct: 224 VTAAAWKVSAGAAAHLPVARVVNLTKAIQGLKERGYYTVGLDGAGNTTVGETGFETDPLV 283
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+VLGSEG GL LV +C L IP + +VES
Sbjct: 284 VVLGSEGKGLSRLVRENCDALASIPIS----------------------------SSVES 315
Query: 554 LNVSVAAGVLLHHLVGHQVSNNSHIE 579
LN SVAAG+ L+ + + SH +
Sbjct: 316 LNASVAAGISLYAIATARRRPASHTQ 341
>gi|90425125|ref|YP_533495.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB18]
gi|90107139|gb|ABD89176.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB18]
Length = 275
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 92/158 (58%), Gaps = 10/158 (6%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PLE ELD + Q + + LD++TDP N+GAI+RSA F +V
Sbjct: 101 HQGLLAEADPLEP---PELDTLP----QQGIVLVLDQITDPHNVGAILRSAAAFAVKAIV 153
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
A++S +GV++K++SG+LEL+ + N+ + L + G++ +G S L
Sbjct: 154 TTARHSPEATGVLAKSASGALELVPMVTVQNLARALTDLNDRGFQTVGLD-SEGGDDLAT 212
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
IP P LVLG+EG GLR L ++C+ L R+ PG I
Sbjct: 213 IPLSAPLALVLGAEGKGLRQLTRQTCSALARLDMPGEI 250
>gi|148273670|ref|YP_001223231.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
gi|147831600|emb|CAN02568.1| putative tRNA/rRNA methyltransferase [Clavibacter michiganensis
subsp. michiganensis NCPPB 382]
Length = 356
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 9/188 (4%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQA 394
++VL +A GI + E + +L+ + G+ HQGL L P E EL + Q
Sbjct: 143 KEVLSLATGRGIPVLEVMRPELDRIAGHDAVHQGLALKVPPYEYADAIELLDKTISRGQL 202
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L VALD +TDP+NLGAIIRS FG GV++ + S L+ K S+G+ +
Sbjct: 203 PLLVALDGITDPRNLGAIIRSVAAFGGHGVIVPQRRSVGLTASAWKTSAGAAARTPVAMA 262
Query: 455 NNMMQFLVSSAENGWRVL----GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
+N+ Q L + + G V+ GG +S L + +P ++V+GSEG GL LV +
Sbjct: 263 SNLTQTLKALKQRGVFVVGLDGGGDMSLHEFTLAD----RPIVVVVGSEGKGLSRLVTET 318
Query: 511 CTHLVRIP 518
C +V IP
Sbjct: 319 CDTVVSIP 326
>gi|346974880|gb|EGY18332.1| rRNA methyltransferase [Verticillium dahliae VdLs.17]
Length = 619
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 97/318 (30%), Positives = 138/318 (43%), Gaps = 85/318 (26%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI---K 350
L+G PV AAL R+ Y LYV G SN R D V +A+ G+ I
Sbjct: 306 LFGRWPVTAALKEARRKLYHLYVYAG----SNRRDANDP-----VRTLAQKHGVRITVVP 356
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD-----------EDQA----- 394
E+ +H ++ + RPH GLVL+ SPL + + L P++ D ED
Sbjct: 357 ESEQHIMDNMSKGRPHNGLVLEVSPLPQLPLVSLGPVTEDGYTVEIAHQMKEDAEINGTE 416
Query: 395 --SLW----------VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
W + L EV DP NLGA++R+A F GA+ VV+ + S+P++ V KA+
Sbjct: 417 PFQAWNSRAGHKPFVLLLHEVMDPGNLGAMLRTARFLGAAAVVITKQTSSPITPTVVKAA 476
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWR----VLGGSVSSKAV-------------PLNE 485
+G+ E + + + + FL S + GW V S SS + PL E
Sbjct: 477 AGAAEELAIFSVADPVAFLEGSQKAGWESYVAVAPASGSSNSARQQVTADELAEEDPLRE 536
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQF 545
+P ILVLG+EG GL + + V I Q
Sbjct: 537 ----KPCILVLGNEGEGLSRKIMSRASRQVTI------------------------QRQP 568
Query: 546 QSFMAVESLNVSVAAGVL 563
+V+SLNVSVAA +L
Sbjct: 569 AGRSSVDSLNVSVAAALL 586
>gi|218441056|ref|YP_002379385.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7424]
gi|218173784|gb|ACK72517.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7424]
Length = 310
Score = 101 bits (252), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PV+AAL R+ ++V L S + +L A+ G I E
Sbjct: 52 IYGRHPVIAALEGD-RQINKIWVMPKLRYDSR---------FHSLLTQAKANGTVIDEVD 101
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
H L+ + HQG+V SP V+++EL + A + + D +TDP NLGA+I
Sbjct: 102 PHRLSQITKGANHQGIVAQISPYAYVELEELIEQAKARSSAPVILIADGITDPHNLGAMI 161
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+ GA G+V+ + +A ++ V K ++G+LE + + N+ + L E G+ + G
Sbjct: 162 RTTEAMGAQGLVIPQRRAAGITSTVMKVAAGALEHLPVARVVNLSRALEQLKEAGFWLYG 221
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S + L+ I LV+GSEG GL L ++SC LV IP
Sbjct: 222 TMADSGKL-LHTIDFKGAVGLVVGSEGEGLSLLTQKSCDALVSIP 265
>gi|377557023|ref|ZP_09786689.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
gastricus PS3]
gi|376166669|gb|EHS85558.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
gastricus PS3]
Length = 251
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 121/228 (53%), Gaps = 13/228 (5%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE + G P +AAL + + +++Q+GL K D G +++++A+ + I
Sbjct: 7 GEFIIGRHPAVAALKSD-QAVNKVFIQKGL--------KSDALG--QIIQLAKERQLIIS 55
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K L+ + ++ HQG+VL + + +I +L + +A ++ LDE+ DP NLG
Sbjct: 56 NVPKAKLDQMTDHQNHQGVVLAVAAYQYAQIDDLFANAEAHQEAPFFLILDELADPHNLG 115
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
+I+R+A G G+++ + S L+ VV+K S+G++E + + N++Q + G
Sbjct: 116 SILRTADAAGVHGIIIPKRRSVGLTAVVAKTSTGAIEHVPVARVTNLVQTAKELQQRGVW 175
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G + + + P LV+G+EG G+ PL++++C ++ IP
Sbjct: 176 LFGTDM--QGTDYRQWQANGPVALVIGNEGKGISPLLKKTCDEMLTIP 221
>gi|227498998|ref|ZP_03929135.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|352685571|ref|YP_004897556.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
gi|226904447|gb|EEH90365.1| RNA methyltransferase [Acidaminococcus sp. D21]
gi|350280226|gb|AEQ23416.1| RNA methyltransferase [Acidaminococcus intestini RyC-MR95]
Length = 249
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 117/233 (50%), Gaps = 29/233 (12%)
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+E++L + ++++ +K L+ + + HQG+V S + + E+ A + +
Sbjct: 35 FEEILSLCVKRHVAVERVNKERLDRLSPDVRHQGVVAVGSAVAFRDLDEVLEGVAQKGKV 94
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
+ LDE+ DPQN+GA+IRSA G V++ + SAPL VV+K S+G+LE +
Sbjct: 95 PFLLLLDELQDPQNIGALIRSANAAGVDAVIVPQRRSAPLGAVVAKISAGALEHEPVVSV 154
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+++ + + G+ ++G + K + + G P +LV+G+EG G+ LV+ +C L
Sbjct: 155 TNLVRTMKDLKKRGFWIVGADMDGKDLYFDADLTG-PLVLVVGAEGKGVGRLVKENCDFL 213
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VRIP V+SLN SVA G+LL+ +
Sbjct: 214 VRIP----------------------------MLGQVQSLNASVAGGILLYEI 238
>gi|217976553|ref|YP_002360700.1| TrmH family RNA methyltransferase [Methylocella silvestris BL2]
gi|217501929|gb|ACK49338.1| RNA methyltransferase, TrmH family, group 3 [Methylocella
silvestris BL2]
Length = 293
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/231 (29%), Positives = 119/231 (51%), Gaps = 24/231 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AL A R+ + +Y E + +K+ G++ + +
Sbjct: 62 LYGFHAVREALRAGKRKMFDIYATEAAA--------------QKLAPEIAAAGLTARLVA 107
Query: 354 KHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
DL+ +G HQG++L+A P E + I ++ P ++ + + LD++TDP N+GAI
Sbjct: 108 AEDLSRRLGPAAVHQGVMLEARPFEALDISDIAP------ESGVVLVLDQITDPHNVGAI 161
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
R+A F +V+ +++ L+GV++KA+SG LE + + + N+ + L + + G+ +
Sbjct: 162 ARTAAAFRVDALVMTERHAPELTGVLAKAASGGLEHVPIIHVVNLARALRALKDQGYLRV 221
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G ++ L + P +P L+LG EG GLR L +C + R+ PG I
Sbjct: 222 GLDSEGEST-LTDAPLSRPLALILGGEGKGLRRLTRENCDLVARLDMPGPI 271
>gi|126654404|ref|ZP_01726149.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
gi|126589154|gb|EAZ83338.1| 23S rRNA methyltransferase [Bacillus sp. B14905]
Length = 250
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 123/229 (53%), Gaps = 15/229 (6%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE + G PVL AL + R+ +++ EG+ K G ++L +A G+ ++
Sbjct: 6 GEIIAGKNPVLEALRS-GRDMNKVWIAEGVK----------KSGVNELLDLARERGVIVQ 54
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K ++ + + HQG+V + + ++++L +A + + ++ LDE+ DP NLG
Sbjct: 55 FVPKKKVDQL-SSANHQGIVASVAAYQYAELEDLFAAAAKKQEDPFFLILDELEDPHNLG 113
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-W 469
+I+R+A GA G+++ + S L+ VV+KAS+G++E + + NN+ Q + E G W
Sbjct: 114 SIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTVDELKERGVW 173
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G+ + +V ++ P +++GSEG G+ L++ C L +P
Sbjct: 174 --IAGTDAKGSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLP 220
>gi|309812593|ref|ZP_07706338.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
Ellin185]
gi|308433444|gb|EFP57331.1| RNA methyltransferase, TrmH family, group 3 [Dermacoccus sp.
Ellin185]
Length = 324
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/186 (33%), Positives = 99/186 (53%), Gaps = 10/186 (5%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+ LK+A+ G+++ ET + +L+ + HQGL L P E +L I + L
Sbjct: 114 ETLKIAQEQGVAMLETPRGELDRLTDGAVHQGLALQVPPYEYAHPSDL--IDPELPGTPL 171
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGAI+RS FG GVV+ + SA ++ K S+G+ + + +N
Sbjct: 172 VVALDGITDPRNLGAIVRSTAAFGGHGVVIPQRRSAGMTASAWKTSAGAAARIPVAQASN 231
Query: 457 MMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
+ L + G+ V+G G V + L + +P ++V+GSEG GL LV +C
Sbjct: 232 LTAALKEFKKAGFFVIGLDMDGDVDLPGLELAD----RPLVVVVGSEGKGLSRLVSETCD 287
Query: 513 HLVRIP 518
+V +P
Sbjct: 288 QIVSVP 293
>gi|359461745|ref|ZP_09250308.1| RNA methyltransferase [Acaryochloris sp. CCMEE 5410]
Length = 264
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/236 (28%), Positives = 121/236 (51%), Gaps = 11/236 (4%)
Query: 283 PSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMA 342
P+ V + G+ +YG VL+AL + R +++ +R + D + + +L A
Sbjct: 6 PAQVEEEKGDLIYGRHSVLSALEHQ-RSLNRVWI--------VSRLRYDPR-FHSLLNQA 55
Query: 343 ENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDE 402
++ G I E LN + HQG+ + E + I L + + + +A D
Sbjct: 56 KSQGTIIDEVDHRRLNQLTQQATHQGIAAQVAAYEYLDILTLIEQANAANPKPVIIAADS 115
Query: 403 VTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLV 462
+TDP NLGA+IR+A GA GV++ + +A ++ VV+K ++G+LE + + N+ Q L
Sbjct: 116 ITDPHNLGAMIRTAEALGAQGVIIPQRRAAGVTSVVAKVATGALETLAIARVVNLNQGLE 175
Query: 463 SSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G+ + G S S+ ++ + +PT+LV+G+EG GL + C +V IP
Sbjct: 176 QLKKAGFWIYGLSTSAPQ-SIHTVTFTEPTVLVIGAEGPGLSVSTQHHCDQMVSIP 230
>gi|260770911|ref|ZP_05879840.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
furnissii CIP 102972]
gi|375129785|ref|YP_004991883.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
11218]
gi|260614148|gb|EEX39338.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
furnissii CIP 102972]
gi|315178957|gb|ADT85871.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio furnissii NCTC
11218]
Length = 246
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 85/281 (30%), Positives = 126/281 (44%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +GIS
Sbjct: 1 MSNEFIYGIHAVNAVLERDPARFVEAYVLKG---------RQDDR-LLPVLNELARLGIS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E + L+ HQG++ P + + +LD I A Q L V LD VTDP N
Sbjct: 51 IQEMHRKALDDKAQGANHQGVIAKVKPAKQLNENDLDDIIAQHPQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAP++ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 IWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA G+ L V
Sbjct: 221 G---------------------SVSSLNVSVATGICLFEAV 240
>gi|222530011|ref|YP_002573893.1| TrmH family group 3 RNA methyltransferase [Caldicellulosiruptor
bescii DSM 6725]
gi|222456858|gb|ACM61120.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
bescii DSM 6725]
Length = 253
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/226 (30%), Positives = 111/226 (49%), Gaps = 18/226 (7%)
Query: 296 GVGPVLAAL--SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
G PV AL AK E Y SN+ K K+ +++ + G+ +K
Sbjct: 6 GKNPVKEALKSGAKITEVYI----------SNSAKDKETA---QIIDLCRQNGVVVKFVD 52
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
KH + + + QG++ A E I ++ + + V LD +TDPQN G+II
Sbjct: 53 KHKIYKMAQTKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSII 112
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA+ G G+V+ +NS P++ V KAS+G++E M++ N+ + + E G W
Sbjct: 113 RSAHLCGVHGIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFA 172
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ SK P+ E PT +V+GSEG G+ LV+ L++IP
Sbjct: 173 ADANGSK--PVYECDFTIPTCVVIGSEGKGITRLVKEGADFLIKIP 216
>gi|186681662|ref|YP_001864858.1| RNA methyltransferase [Nostoc punctiforme PCC 73102]
gi|186464114|gb|ACC79915.1| RNA methyltransferase, TrmH family, group 3 [Nostoc punctiforme PCC
73102]
Length = 363
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/288 (28%), Positives = 134/288 (46%), Gaps = 44/288 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL+AL K R +++ R + D + +L+ EN G I E
Sbjct: 109 IYGRHPVLSALQ-KQRNLNRIWI--------TTRLRYDPSFHHFLLQAKEN-GTVIDEVE 158
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+ +P +++ +L S + VA D +TDP NLGAII
Sbjct: 159 PKRLDYLTNGANHQGVAAQTAPYGYIELADLIEQSKSVTDPVIVVA-DGITDPHNLGAII 217
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + ++ ++ V K ++G+LE + N+ + L E G+ +
Sbjct: 218 RTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFTVSRVVNLSRALEELKEAGFWIY- 276
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
G+ +S + P++ + P +LV+GSEG GL L +RSC LV IP G P
Sbjct: 277 GTAASGSEPVHTVNFKGPIVLVIGSEGEGLGMLTQRSCDFLVSIPLQGKTP--------- 327
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIE 579
SLN SVAAG+ L+ + + N +++
Sbjct: 328 ---------------------SLNASVAAGMALYEIYRQRSLNTLYLD 354
>gi|429759535|ref|ZP_19292033.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
KON]
gi|429179496|gb|EKY20743.1| RNA methyltransferase, TrmH family, group 3 [Veillonella atypica
KON]
Length = 245
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 35/241 (14%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K K G ++ +A++ G+ ++ T +N + PHQG++ + +E + E+ S
Sbjct: 30 KIKTGLSDIVGLAKSKGVEVRPTPVKQMNRYETDVPHQGVIAFVNAVEFKDLGEVLQESN 89
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
E+ L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E +
Sbjct: 90 HEN--PLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAVEQI 147
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
L N+ Q + + G+ VLG + L E PT+LV+G+EG G+ +V+
Sbjct: 148 PLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRT-LYETDLTIPTVLVIGNEGKGISRVVKE 206
Query: 510 SCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C LV IP GN+ SLN SVAA +L++
Sbjct: 207 ACDFLVTIPMYGNL------------------------------NSLNASVAAAILMYEA 236
Query: 568 V 568
V
Sbjct: 237 V 237
>gi|434389414|ref|YP_007100025.1| rRNA methylase, putative, group 3 [Chamaesiphon minutus PCC 6605]
gi|428020404|gb|AFY96498.1| rRNA methylase, putative, group 3 [Chamaesiphon minutus PCC 6605]
Length = 496
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/260 (28%), Positives = 128/260 (49%), Gaps = 12/260 (4%)
Query: 261 KPEYQRWNRQENSGRTTWKEA-APSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEG 319
KP+ R + R W++ AP + V + LYG V A+ + R+ ++V
Sbjct: 212 KPKEWRDRPPSRNNRGGWQDPPAPEITEEEVTDYLYGKHSVFTAIENE-RQINRIWV--- 267
Query: 320 LSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMV 379
LS K + + ++ A+ G + E L+ + HQG+V +P + +
Sbjct: 268 --LS----KLRHHPAFFTLIDQAKANGTVVDEVDNQRLSYLANGGNHQGIVAQVAPHDYL 321
Query: 380 KIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVS 439
+I+EL + A + V D +TDPQNLG+I+R+A GA GV++ + + ++ V
Sbjct: 322 EIEELIAQALAASDAPVIVVADGITDPQNLGSIVRTAEALGAQGVIIPQRRAVGITSTVL 381
Query: 440 KASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS-KAVPLNEIPPGQPTILVLGS 498
K ++G+LE + + N+ + L E G+ + G + + +AV + +P L +GS
Sbjct: 382 KVAAGALEHLPVARVVNLSRALSQLKEAGFWIYGTTADAEQAVYSVDFTDRRPVALAIGS 441
Query: 499 EGTGLRPLVERSCTHLVRIP 518
EG GL L ++ C HLV IP
Sbjct: 442 EGDGLSLLTQKGCDHLVSIP 461
>gi|410461723|ref|ZP_11315369.1| tRNA/rRNA methyltransferase [Bacillus azotoformans LMG 9581]
gi|409925490|gb|EKN62701.1| tRNA/rRNA methyltransferase [Bacillus azotoformans LMG 9581]
Length = 247
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/231 (28%), Positives = 121/231 (52%), Gaps = 15/231 (6%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E + G PVL AL A+ R+ +++ EG +K ++V+ +A+ G+
Sbjct: 1 MDNEWIIGKNPVLEALRAE-RDINKIWIAEG----------SNKGQMQQVIGLAKQAGVI 49
Query: 349 IKETSKHDLNMVV-GNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
++ K L+ V GN HQG+ + + +I++L +A +++ ++ LDE+ DP
Sbjct: 50 VQYVPKQKLDHTVSGN--HQGVAASVAAYQYAEIEDLFNKAAAKNEDPFFLILDEIEDPH 107
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLG+I+R+A G GV++ + + L+ V+KAS+G++E + + N+ + + E
Sbjct: 108 NLGSILRTADAAGIHGVIIPKRRAVGLTAAVAKASTGAIEHVPVARVTNLARTMEELKEK 167
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G ++G K ++ P +V+GSEG G+ L+ C L+R+P
Sbjct: 168 GIWIIGTDAKGKQ-DFRQMDAKMPLAIVIGSEGKGIGRLISEKCDFLIRLP 217
>gi|449107300|ref|ZP_21743956.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ASLM]
gi|451968995|ref|ZP_21922224.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
US-Trep]
gi|448962545|gb|EMB43233.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ASLM]
gi|451702167|gb|EMD56596.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
US-Trep]
Length = 258
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 117/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + +++ L+ + P H+G+VL + K +D A
Sbjct: 44 KKILEAARKLNLKVEKQDNQFLDSITKTLPEQLRDHRGIVLVTEAEDQKKGMSIDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E ++ V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKGSAFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++G+EG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPNLTFP--KKTVLIMGNEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|367470257|ref|ZP_09469970.1| TrmH family tRNA/rRNA methyltransferase YacO [Patulibacter sp. I11]
gi|365814654|gb|EHN09839.1| TrmH family tRNA/rRNA methyltransferase YacO [Patulibacter sp. I11]
Length = 263
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/229 (33%), Positives = 117/229 (51%), Gaps = 41/229 (17%)
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++E L +VG+ HQG+V P V+++EL ++ D A L VALDEV DPQN
Sbjct: 63 VREAEPDALTSLVGSGDHQGVVAAVDPYPYVELEEL--LAHD---APLLVALDEVQDPQN 117
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LG+I R+A GA+G+++C +A ++ +KAS+G++E + + N+ L ++ + G
Sbjct: 118 LGSIARTAECAGATGLIICRHRAAEVTPSAAKASAGAVEHLPIAQVRNLADALTAAKDAG 177
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQP-----TILVLGSEGTGLRPLVERSCTHLVRIPGNIP 522
W + G+ A + + QP +LV+G+EGTGLRP V +C LV +P
Sbjct: 178 AW--IYGAAGDAAGGRDPVAYDQPDYSGSVVLVMGAEGTGLRPRVAATCDELVALP---- 231
Query: 523 VDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
G ID SLNV VA VLL+ ++ Q
Sbjct: 232 ---LRGRID---------------------SLNVGVATAVLLYEILQQQ 256
>gi|152964880|ref|YP_001360664.1| TrmH family RNA methyltransferase [Kineococcus radiotolerans
SRS30216]
gi|151359397|gb|ABS02400.1| RNA methyltransferase, TrmH family, group 3 [Kineococcus
radiotolerans SRS30216]
Length = 321
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/237 (30%), Positives = 114/237 (48%), Gaps = 30/237 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+++L A + GI + E S+ DL+ N HQG+ P + +L +AD + +
Sbjct: 114 KEILAAAGDKGIPLLEASRQDLDRHTENAVHQGVAATVPPYDYAHPMDLLDRAADSGRPA 173
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L VALD VTDP+NLGA++RS FG GVV+ + +A ++ K S+G+ +
Sbjct: 174 LVVALDGVTDPRNLGAVVRSVAAFGGHGVVVPERRAAGMTASAWKTSAGAAARTPVARAT 233
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKA-VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+++ + + G V+G +P ++ G P +LV+G+EG GL LV C +
Sbjct: 234 NLVRAIEEYQKAGLFVVGLDAEGDVLLPQLKLADG-PLVLVVGAEGAGLSRLVREKCDQV 292
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
V IP AG A ESLN VAAG+ L+ + H+
Sbjct: 293 VSIP-------MAG---------------------AFESLNAGVAAGIALYEVARHR 321
>gi|345001217|ref|YP_004804071.1| TrmH family RNA methyltransferase [Streptomyces sp. SirexAA-E]
gi|344316843|gb|AEN11531.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces sp.
SirexAA-E]
Length = 318
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 118/256 (46%), Gaps = 40/256 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
LYVQ+ + D++ E + E I++ E + +L+ + HQGLVL
Sbjct: 96 LYVQQYID--------NDERVRECLQLAGERGNINLMEAPRPELDRMTKGLNHQGLVLQV 147
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
P E ++L + D D+ L VALD VTDP+NLGAI+RS FG GVV+ + +A
Sbjct: 148 PPYEYAHPEDLTAAAYDNDEEPLIVALDGVTDPRNLGAIVRSVSAFGGHGVVVPERRAAG 207
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
++ K+S+G+ + N+ + L + G V+G + + + P +
Sbjct: 208 MTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKAGLTVVGLAADGEHTVEDLEQLSGPVV 267
Query: 494 LVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
+V+GSEG GL LV +C + VRI PG
Sbjct: 268 IVIGSEGKGLGRLVGETCDYRVRISMPG------------------------------GA 297
Query: 552 ESLNVSVAAGVLLHHL 567
ESLN VAAG++L+ +
Sbjct: 298 ESLNAGVAAGIVLYEV 313
>gi|374576300|ref|ZP_09649396.1| rRNA methylase, putative, group 3 [Bradyrhizobium sp. WSM471]
gi|374424621|gb|EHR04154.1| rRNA methylase, putative, group 3 [Bradyrhizobium sp. WSM471]
Length = 276
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 95/158 (60%), Gaps = 10/158 (6%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I++L+ Q + + LD++TDP N+GAI+RSA F +V
Sbjct: 102 HQGLLAEADPLPSPDIEDLE-------QDGIVLVLDQITDPHNVGAILRSAAAFAVKAIV 154
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
A++S +GV++KA+SG+LEL+ + N+ + L + E G++ +G S + L++
Sbjct: 155 TTARHSPEATGVLAKAASGALELVPMVTVQNLARALTTLNELGFQTVGLD-SEGSADLSD 213
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
+ +P LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 214 VTLREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEI 251
>gi|427716431|ref|YP_007064425.1| TrmH family RNA methyltransferase [Calothrix sp. PCC 7507]
gi|427348867|gb|AFY31591.1| RNA methyltransferase, TrmH family, group 3 [Calothrix sp. PCC
7507]
Length = 322
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/227 (32%), Positives = 118/227 (51%), Gaps = 16/227 (7%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLS-LSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
+YG PVL+AL + Q GL+ + R + D + + +L+ +N G I E
Sbjct: 71 IYGRHPVLSALES----------QRGLNRIWITTRLRYDPRFHHLILQAKDN-GAVIDEV 119
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS-LWVALDEVTDPQNLGA 411
L+ + HQG+ SP +++ +L I+ + A + V D +TDP NLGA
Sbjct: 120 EPKRLDQITDGANHQGIAAQISPYTYIELHDL--IAQAKSLADPVIVVADGITDPHNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIR+A GA G+V+ + +A ++ V K ++G+LE + N+ + L + G+ +
Sbjct: 178 IIRTAEAIGAQGLVIPQRRAAGITSTVVKVAAGALENFPVARVINLSRALEELKDAGFWI 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G +V+ PL+ + P +LV+GSEG GL L +RSC LV IP
Sbjct: 238 YGTAVTGSE-PLHTVNFSGPIVLVVGSEGEGLSMLTQRSCDVLVSIP 283
>gi|326391116|ref|ZP_08212662.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
ethanolicus JW 200]
gi|325992815|gb|EGD51261.1| RNA methyltransferase, TrmH family, group 3 [Thermoanaerobacter
ethanolicus JW 200]
Length = 247
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 115/232 (49%), Gaps = 29/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
K++ +A+ GI + T L+ + G++ HQG+V + + + L + +
Sbjct: 38 KIINLAKEAGIVVSTTDNDILSKLAGSQNHQGVVAVGAVYKYFDVDNLLEYAEQRKEKPF 97
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ LDE+TDP NLGAIIRSA FG G+++ + + ++ V K S+G++E M + +N
Sbjct: 98 LLILDEITDPHNLGAIIRSAEAFGVHGIIIPKRRAVGVNATVVKTSAGAVEHMRIAKVSN 157
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + E G ++G V++ E+ P +V+GSEG G+ LV ++C +V+
Sbjct: 158 INNTIRGLKERGLWIVGTDVNAGK-SFEELDYDFPLAIVIGSEGKGVSKLVLQNCDFVVK 216
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
IP G+I+ SLN SVAA +L++ +V
Sbjct: 217 IP-------MKGKIN---------------------SLNASVAASILIYQVV 240
>gi|309789615|ref|ZP_07684196.1| RNA methyltransferase [Oscillochloris trichoides DG-6]
gi|308228351|gb|EFO81998.1| RNA methyltransferase [Oscillochloris trichoides DG6]
Length = 250
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/244 (28%), Positives = 122/244 (50%), Gaps = 16/244 (6%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG V AL A R L V G+ ++ +++K+AE +G+ ++
Sbjct: 3 ELLYGRNAVREALRANRRTIKRLVVSNGV---------QETGIIAEIIKLAEQIGVPVQR 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + + HQG++L+ + V++++ +A+ ++ L + LD + DPQN+G
Sbjct: 54 VERQQLDKQLRDANHQGVMLETNEYPYVELEDCLAYAAERNEPPLLLLLDHLQDPQNIGT 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
++R+A G GV + + +A ++ V ASSG+ E + + N+ Q + + G V
Sbjct: 114 LLRTAEVVGVHGVAIPGRRAAEITPAVVNASSGATEHLRVVLVGNLAQTIATLQREGVWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G +A L+ P LV+G+EG GL LV C LVR+P AG+I
Sbjct: 174 VGLEDDEQAQDLDAADLNLPLALVVGAEGPGLARLVRERCDFLVRLP-------MAGQIA 226
Query: 532 DVDA 535
++A
Sbjct: 227 SLNA 230
>gi|395791158|ref|ZP_10470616.1| RNA methyltransferase, TrmH family, group 3 [Bartonella alsatica
IBS 382]
gi|395408521|gb|EJF75131.1| RNA methyltransferase, TrmH family, group 3 [Bartonella alsatica
IBS 382]
Length = 276
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 126/247 (51%), Gaps = 30/247 (12%)
Query: 279 KEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV 338
KEAAP K+ LYG+ V +AL R F +LYV + N K+
Sbjct: 34 KEAAPLQQGKIY---LYGIHAVQSALKNPKRIFGSLYV------TPNALKR--------- 75
Query: 339 LKMAEN-MGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASL 396
L + E+ + + L+ +VGN HQG+V++ PL+ ++ EL I+ D L
Sbjct: 76 LNIPESELPCPVTLCLPKQLDALVGNDAVHQGIVVETEPLKPCQLSEL--INTD-----L 128
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ +D++TDP N+GAI+RSA F A ++ ++S SGV++KA+SG+LEL+ N
Sbjct: 129 IIVMDQITDPHNVGAIMRSAVAFKAEALITTCRHSPKESGVLAKAASGALELINYITVQN 188
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + L G+ G ++ PL + G+ LVLG+EG GLR + L R
Sbjct: 189 LAETLRELHIAGFISFGLDSEGES-PLETVLTGEKIALVLGAEGKGLRKKTRETVCALTR 247
Query: 517 I--PGNI 521
+ PGNI
Sbjct: 248 LDMPGNI 254
>gi|390456399|ref|ZP_10241927.1| tRNA/rRNA methyltransferase [Paenibacillus peoriae KCTC 3763]
Length = 248
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/228 (30%), Positives = 118/228 (51%), Gaps = 30/228 (13%)
Query: 342 AENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALD 401
A+ GI +++ K L+ +V HQG+V A+P +++EL + ++ + + LD
Sbjct: 43 AKKAGIIVQQVDKRKLDQMVPGIQHQGVVAQAAPFAYAEVEELLTNARNKGEEPFLILLD 102
Query: 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL 461
E+ DP NLG+I+R+A G GV++ + SA ++ VSK S+G+ E + + NN+ Q +
Sbjct: 103 EIEDPHNLGSILRTADCTGVHGVIVPKRRSAAVTATVSKTSAGAAEYVPVARVNNLGQTI 162
Query: 462 VSSAENGWRVLGGSV-SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
E G V+G V ++ V N + G P +V+G+E G+ L+ C LV++P
Sbjct: 163 DRLKEEGVWVVGTDVAATDPVFGNGVFTG-PVAIVIGNENKGMGRLIREKCDVLVKLP-- 219
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AG+I+ SLN SVAAGV+++ ++
Sbjct: 220 -----MAGQIN---------------------SLNASVAAGVVMYEVL 241
>gi|395764660|ref|ZP_10445284.1| RNA methyltransferase, TrmH family, group 3 [Bartonella sp. DB5-6]
gi|395414197|gb|EJF80646.1| RNA methyltransferase, TrmH family, group 3 [Bartonella sp. DB5-6]
Length = 276
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/232 (33%), Positives = 118/232 (50%), Gaps = 27/232 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
LYG+ V AAL R F LYV + N K+ L + E ++ S+
Sbjct: 46 LYGIHAVHAALKNPKRVFDRLYV------TPNALKR---------LNIPESDLPCSVTLC 90
Query: 353 SKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ +VG + HQG+VL+ +PL+ ++ EL L + +D++TDP N+GA
Sbjct: 91 TPKQLDALVGSDAVHQGVVLETTPLKPCQLSELT-------NTDLVIVMDQITDPHNVGA 143
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA F A ++ ++S SGV++KA+SG+LEL+ N+ + L + G+ V
Sbjct: 144 IMRSAVAFKAEALITTCRHSPQESGVLAKAASGALELINYITVRNLAETLHELHKAGF-V 202
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G S PL G+ L+LG+EG GLR + L R+ PGNI
Sbjct: 203 SFGLDSEGEYPLEAALTGKKIALILGAEGKGLRKKTRETVCALTRLDMPGNI 254
>gi|308176324|ref|YP_003915730.1| RNA methyltransferase [Arthrobacter arilaitensis Re117]
gi|307743787|emb|CBT74759.1| putative RNA methyltransferase [Arthrobacter arilaitensis Re117]
Length = 315
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/238 (32%), Positives = 112/238 (47%), Gaps = 40/238 (16%)
Query: 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVL--------DASPLEMVKIKELDPISAD 390
LK+A GI + E SK +L+ + HQG+ L DA L IK+ D
Sbjct: 100 LKLAAEQGIPLMEASKPELDRMTDAAIHQGMALQIPPYEYKDAVQLATKAIKDFD--KGY 157
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
L++ALD +TDP+NLGAI+RSA FGA GV++ + S ++ K S+G+ +
Sbjct: 158 TKTQPLFLALDGITDPRNLGAIVRSASAFGADGVIIPERRSVGMTASAWKTSAGAAVRVP 217
Query: 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKA-VPLNEIPPGQPTILVLGSEGTGLRPLVER 509
+ CNN+ L G V+G +P E+ G P +V+GSEG GL LV
Sbjct: 218 VAKCNNLTSALKEIKAAGIFVIGLDAGGDMDLPNFELATG-PLCIVVGSEGKGLSRLVRE 276
Query: 510 SCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP ID A+ESLN S+A G+ L+ +
Sbjct: 277 NCDAIVSIP-----------IDS-----------------AMESLNASMAVGISLYEV 306
>gi|414174455|ref|ZP_11428859.1| RNA methyltransferase, TrmH family, group 3 [Afipia broomeae ATCC
49717]
gi|410888284|gb|EKS36087.1| RNA methyltransferase, TrmH family, group 3 [Afipia broomeae ATCC
49717]
Length = 293
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/254 (31%), Positives = 129/254 (50%), Gaps = 30/254 (11%)
Query: 274 GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKK 330
GR W++ K GEG LYG V AL+ R L+V E ++ R+
Sbjct: 40 GRPQWRDREARGHAK--GEGPVVLYGWHSVTMALANPERRIRKLFVTENVA-----RRLA 92
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISA 389
D+K +V + G D++ +G + HQGL+ +A PL + + EL
Sbjct: 93 DEKIDTRVPPELVHPG---------DIDRRLGPDAVHQGLLAEADPLPGLHLDELP---- 139
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
Q + + LD++TDP N+GAI+RSA FG ++ ++S +GV++K++SG+LEL+
Sbjct: 140 ---QDGIVLVLDQITDPHNVGAILRSAAAFGVKAIITTGRHSPEATGVLAKSASGALELV 196
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
+ N+ + L E G+ +G + L+++P P LVLG+EG GLR L
Sbjct: 197 PIIEVANLHRALGEMNEAGFLTVGLDSEGQG-DLSKVPLHAPLALVLGAEGKGLRQLTRE 255
Query: 510 SCTHLVR--IPGNI 521
+C+ + R +PG +
Sbjct: 256 TCSVVARMDMPGAM 269
>gi|114771679|ref|ZP_01449083.1| RNA methyltransferase, TrmH family, group 3 [Rhodobacterales
bacterium HTCC2255]
gi|114547751|gb|EAU50641.1| RNA methyltransferase, TrmH family, group 3 [alpha proteobacterium
HTCC2255]
Length = 264
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 58/154 (37%), Positives = 88/154 (57%), Gaps = 4/154 (2%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQG L+ PL+ + + + D+ + V LD VTDP N+GAI+RSA FGA V+
Sbjct: 88 HQGAALEVMPLDWGNMSTV--CAPRNDKKARLVILDRVTDPHNVGAILRSAEVFGARAVI 145
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPL 483
A+NSAP +G ++K +SG+LE N+ + S E G+ V+G G+ + +
Sbjct: 146 ATARNSAPETGALAKTASGALERQPYLRVRNLATSIKSLQEMGYYVVGLDGTAKNSIDDI 205
Query: 484 NEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
E+ P +VLG+EG GLR L +++C LV+I
Sbjct: 206 AELHQNSPLAIVLGAEGPGLRELTKQTCDELVKI 239
>gi|407689225|ref|YP_006804398.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Balearic Sea AD45']
gi|407292605|gb|AFT96917.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
str. 'Balearic Sea AD45']
Length = 246
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 117/241 (48%), Gaps = 30/241 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K ++ + ++ A GIS++ + L+ V HQG+V A P ++ +LD I
Sbjct: 31 KGRNDERLTNIVNQARRFGISVQFCQRKALDDKVSGEQHQGVVARAKPARVLVEADLDNI 90
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
E Q L + LD VTDP NLGA +R+A G VV+ SA L+G V K + G+ E
Sbjct: 91 LESEAQ-PLILVLDGVTDPHNLGACLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAE 149
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
++ L N+ + L + G ++G + + L ++ PT LV+G+EG G+R L
Sbjct: 150 VVPLIQITNLARTLKHLQDKGLWIVGTAGETDKT-LYDVDLKGPTALVMGAEGKGMRRLT 208
Query: 508 ERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ +C LV++P AG +V SLNVSVA GV L+ +
Sbjct: 209 KETCDELVKLP-------MAG---------------------SVTSLNVSVATGVCLYEI 240
Query: 568 V 568
V
Sbjct: 241 V 241
>gi|420236728|ref|ZP_14741207.1| RNA methyltransferase [Parascardovia denticolens IPLA 20019]
gi|391880027|gb|EIT88525.1| RNA methyltransferase [Parascardovia denticolens IPLA 20019]
Length = 325
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/252 (30%), Positives = 120/252 (47%), Gaps = 42/252 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++++A G+ I E + +++ + HQG+++ A+P + ++EL
Sbjct: 92 NRIEHDDRTRE-IIRLAGLEGLKILEADRLEMDRIARTDHHQGVIIKAAPYQYHTLQELA 150
Query: 386 PISADEDQAS-------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+ + A L++ALD VTDPQNLGA+IRSA FGA+GV++ + SA
Sbjct: 151 DKAEAKASAMKAASPAARALAQPLFIALDGVTDPQNLGAVIRSAAAFGANGVIIPERRSA 210
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ K S+G+ + + N+++ + S E G+ +G A P
Sbjct: 211 SVTASAWKVSAGAAAHLPVARVVNLIKAIESLKERGYYSIGLDGGGTATVGESGFESDPL 270
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552
I+VLGSEG G+ LV C +V IP S VE
Sbjct: 271 IVVLGSEGKGISRLVREQCDSIVSIP--------------------------MTSL--VE 302
Query: 553 SLNVSVAAGVLL 564
SLN SVAAG+ L
Sbjct: 303 SLNASVAAGIAL 314
>gi|347751613|ref|YP_004859178.1| TrmH family RNA methyltransferase [Bacillus coagulans 36D1]
gi|347584131|gb|AEP00398.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
36D1]
Length = 247
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 43/277 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL A RE +++ EG K ++V+++A ++++
Sbjct: 4 EYIAGKNPVLEALRA-GREINKIWIAEG----------SQKGAMKQVIELARERKVTVQF 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K ++ V + HQG++ + + ++ ++ + ++ + LDE+ DP NLG+
Sbjct: 53 VPKKKIDQV-ADGAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPHNLGS 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
I+R+A GA GV++ + S L+ V+KAS+G++E + + N+ Q + + G W
Sbjct: 112 ILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQGLW- 170
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
+ G+ +S ++ P LV+GSEG G+ +V+ +C L+R+P AG
Sbjct: 171 -IAGTDASGTTDYRQMDADLPLCLVIGSEGKGMSRIVKEACDFLIRLP-------MAGH- 221
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V SLN SVAAG+L++ +
Sbjct: 222 --------------------VTSLNASVAAGLLMYEV 238
>gi|148559141|ref|YP_001259170.1| RNA methyltransferase [Brucella ovis ATCC 25840]
gi|148370398|gb|ABQ60377.1| RNA methyltransferase, TrmH family, group 3 [Brucella ovis ATCC
25840]
Length = 303
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 32 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 89
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 90 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 137
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 138 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 190
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 191 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEVTLSGNRI 249
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 250 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 280
>gi|340356799|ref|ZP_08679440.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Sporosarcina
newyorkensis 2681]
gi|339620137|gb|EGQ24708.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Sporosarcina
newyorkensis 2681]
Length = 252
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 121/228 (53%), Gaps = 15/228 (6%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ AL + R+ ++V EG+ +KK +++K+A+ GI I+
Sbjct: 7 ELIGGRNPVVEALRSG-RQLNKIWVAEGV----------NKKSIGEIMKLAKEAGIVIQT 55
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K L+ + HQG++ + + ++ +L I+ D + ++ LDE+ DP NLG+
Sbjct: 56 APKQKLDGMT-ELSHQGILASVAAYDYAELDDLFEIARDRKEDPFFIILDELEDPHNLGS 114
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
I+R+A G G+++ + S L+GVV+KAS+G++E + + NN+ Q + + G W
Sbjct: 115 ILRTADASGVHGIIIPKRRSVGLTGVVAKASTGAIEHIPVVRVNNLSQTVDDLKKRGVW- 173
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G+ +S + + P +++GSEG G+ ++ C L +P
Sbjct: 174 -IAGTDASNSTDYRHMDATLPLAVIIGSEGKGMSRILRERCDFLYSLP 220
>gi|399525491|ref|ZP_10765923.1| RNA methyltransferase, TrmH family, group 3 [Atopobium sp. ICM58]
gi|398373124|gb|EJN51097.1| RNA methyltransferase, TrmH family, group 3 [Atopobium sp. ICM58]
Length = 325
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 118/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A MG + E ++ DL++ HQG+ ++ E +L +
Sbjct: 110 KDDR-VEEVVRLASAMGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYADASDLIAGAL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RSA FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGHPLLVALDQVTDPHNLGAVLRSAGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVE 508
+ N+++ L + G+ V+G A PL + P ++V G+EG GL LV
Sbjct: 229 PVARATNLVRALEEAKAAGYFVVGLDGGGDA-PLRGLSLADGPLVVVTGAEGAGLSRLVR 287
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V +IP+ T VESLN +VA G+ L+ +
Sbjct: 288 ETCDQIV----SIPIAST------------------------VESLNAAVATGIALYEV 318
>gi|16125488|ref|NP_420052.1| spoU rRNA methylase [Caulobacter crescentus CB15]
gi|221234234|ref|YP_002516670.1| 23S rRNA Gm2251-methyltransferase [Caulobacter crescentus NA1000]
gi|13422566|gb|AAK23220.1| spoU rRNA methylase family protein [Caulobacter crescentus CB15]
gi|220963406|gb|ACL94762.1| 23S rRNA Gm2251 methyltransferase [Caulobacter crescentus NA1000]
Length = 278
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/158 (39%), Positives = 87/158 (55%), Gaps = 16/158 (10%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADE---DQASLWVALDEVTDPQNLGAIIRSAYFFGAS 422
HQGL L KI E +P++ E V LD++TDPQN+GAI RSA FGA
Sbjct: 100 HQGLAL--------KIDEPEPLTIAELGTPAKGFLVMLDQITDPQNIGAIFRSAAAFGAK 151
Query: 423 GVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR--VLGGSVSSKA 480
GV+L +++ LSGV++K + G+++ N+ + L A+ GWR L G
Sbjct: 152 GVILQDRHAPALSGVLAKTAVGAVDKAPYARVVNLSRALEELADLGWRAVALAGEAEQS- 210
Query: 481 VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
L+ + QPT+LVLGSEG G+R LV C L +IP
Sbjct: 211 --LDAVLDSQPTVLVLGSEGEGVRRLVAEHCDALGKIP 246
>gi|402822877|ref|ZP_10872335.1| rRNA methylase [Sphingomonas sp. LH128]
gi|402263585|gb|EJU13490.1| rRNA methylase [Sphingomonas sp. LH128]
Length = 279
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 95/162 (58%), Gaps = 9/162 (5%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVL+ +PL+ + + ++ D D V LD+VTDP N+GAI+RSA
Sbjct: 98 LVAKDAPHQGLVLECAPLDDMFLADV----LDGDPTRPVVVLDQVTDPHNVGAIMRSAAA 153
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV-LGGSV 476
F A +V +++ P SG ++K++SG+LE++ N+ + L AE G WR+ L G+
Sbjct: 154 FDACCIVTQDRHAPPESGTLAKSASGALEVLPWIRVVNLARALEEIAEAGYWRIGLDGAA 213
Query: 477 SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S L E P P LVLG+EG G+R + + C + ++P
Sbjct: 214 EST---LGEALPTGPVALVLGAEGDGMRHNITQHCDAIAKLP 252
>gi|260565501|ref|ZP_05835985.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|265991325|ref|ZP_06103882.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
gi|260151569|gb|EEW86663.1| RNA methyltransferase [Brucella melitensis bv. 1 str. 16M]
gi|263002109|gb|EEZ14684.1| RNA methyltransferase [Brucella melitensis bv. 1 str. Rev.1]
Length = 286
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ + +S
Sbjct: 121 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|395789936|ref|ZP_10469444.1| RNA methyltransferase, TrmH family, group 3 [Bartonella taylorii
8TBB]
gi|395428158|gb|EJF94240.1| RNA methyltransferase, TrmH family, group 3 [Bartonella taylorii
8TBB]
Length = 276
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 117/232 (50%), Gaps = 27/232 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
LYG+ V AAL R F LYV +SN K+ L + E ++ +I
Sbjct: 46 LYGIHAVHAALKNPKRIFSGLYV------TSNALKR---------LNIPESDLPCAITLC 90
Query: 353 SKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S L+ +VG + HQG+V++ PL+ ++ EL L + +D++TDP N+GA
Sbjct: 91 SPKQLDALVGSDAVHQGVVVETIPLQSCQLSELT-------NTDLVIVMDQITDPHNVGA 143
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA F A ++ ++S SGV++KA+SG+LE++ N+ + L + G+
Sbjct: 144 IMRSAVAFKAGALITTCRHSPQESGVLAKAASGALEMINYITVRNLAETLHELHKAGFIS 203
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
G S PL G+ L+LG+EG GLR + L R +PGNI
Sbjct: 204 FGLD-SEGEYPLEIALTGRKIALILGAEGKGLRKKTRETVCALTRLDVPGNI 254
>gi|343493071|ref|ZP_08731410.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
nigripulchritudo ATCC 27043]
gi|342826578|gb|EGU61000.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
nigripulchritudo ATCC 27043]
Length = 246
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 129/281 (45%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E LYG+ V A L F +V +G ++D + +L +N+GIS
Sbjct: 1 MSNEFLYGIHAVKAVLEKDPVRFIEAFVLKG---------RQDDR-LLPLLNELQNVGIS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ + L+ HQG++ P + + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQQMGRKALDDKAKGANHQGIIARVKPAKTLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAP++ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQAKLSGALAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA+G+ L V
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAV 240
>gi|315125636|ref|YP_004067639.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
SM9913]
gi|359437977|ref|ZP_09228025.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20311]
gi|359445184|ref|ZP_09234934.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20439]
gi|392555997|ref|ZP_10303134.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
undina NCIMB 2128]
gi|315014149|gb|ADT67487.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas sp.
SM9913]
gi|358027350|dbj|GAA64274.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20311]
gi|358041001|dbj|GAA71183.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20439]
Length = 247
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 125/287 (43%), Gaps = 40/287 (13%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E ++G V A L+ + F +Y +G +D K V++ A GIS
Sbjct: 1 MSNELIFGFHSVEAILAKEPERFIEIYALKG----------RDDKRLSPVIEQARQFGIS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++ + L+ + HQG++ + + K+LD I ED L V LD +TDP N
Sbjct: 51 VQFMQRKALDNKAKDEQHQGIIANVKAARVFNEKDLDEIIEREDTPFLLV-LDGITDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +RSA G V++ SA L+G K + G+ E + L N+ + L + G
Sbjct: 110 LGACLRSADAAGVHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
V+G + + + G P +V+G+EG G+R L C LV+IP AG
Sbjct: 170 VWVVGTAGETDTHVFDASLTG-PMAIVMGAEGEGMRRLTREHCDVLVKIP-------MAG 221
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
V SLNVSVA G+ L ++ + N
Sbjct: 222 ---------------------TVSSLNVSVATGICLFEVLRQRAETN 247
>gi|313893275|ref|ZP_07826850.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
taxon 158 str. F0412]
gi|313442171|gb|EFR60588.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
taxon 158 str. F0412]
Length = 243
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 124/247 (50%), Gaps = 47/247 (19%)
Query: 330 KDKKGYEKVLKMAENMGIS-----IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
K K G ++ +A++ GI IK+ +K+DL + PHQG++ S V+ KEL
Sbjct: 30 KVKTGLADIVGLAKSQGIEVRPTPIKQMNKYDLEV-----PHQGVIALVSA---VQFKEL 81
Query: 385 DPISADED-QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
+ + + + L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+
Sbjct: 82 GEVLQETNHEVPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSA 141
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G++E + L N+ Q + + G+ V+G + L E PT++V+G+EG G+
Sbjct: 142 GAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRT-LYEADMTIPTVIVIGNEGKGI 200
Query: 504 RPLVERSCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
+V+ +C LV IP GN+ SLN SVAA
Sbjct: 201 SRVVKEACDFLVTIPMYGNL------------------------------NSLNASVAAA 230
Query: 562 VLLHHLV 568
VL++ V
Sbjct: 231 VLMYEAV 237
>gi|257440435|ref|ZP_05616190.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
prausnitzii A2-165]
gi|257197057|gb|EEU95341.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium
prausnitzii A2-165]
Length = 267
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/227 (29%), Positives = 115/227 (50%), Gaps = 27/227 (11%)
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVAL 400
MA+ G ++K + L ++ G HQG+ AS +E V +++L ++ ++ + V
Sbjct: 61 MAKEAGATVKRVHPNKLRLMTGTESHQGVAAFASEIEYVTVEDLLNVAREKGEPPFLVLS 120
Query: 401 DEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQF 460
D + DP NLGA++RSA GA G+V+ + A ++ V K+S+G+ E + + N+ +
Sbjct: 121 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 180
Query: 461 LVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
+ + G V + VPL + P LVLGSEG+G+ LV++ C +VR+
Sbjct: 181 IRRLKDQGVFVYCADMD--GVPLRKNNLTGPIALVLGSEGSGVSQLVKKLCDGVVRL--- 235
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
D+ A G V+S NVSVAAG++L+ +
Sbjct: 236 -----------DMAAQGT-----------GVDSFNVSVAAGIILYEI 260
>gi|62290163|ref|YP_221956.1| RNA methyltransferase [Brucella abortus bv. 1 str. 9-941]
gi|189024398|ref|YP_001935166.1| TrmH family RNA methyltransferase [Brucella abortus S19]
gi|260546707|ref|ZP_05822446.1| RNA methyltransferase [Brucella abortus NCTC 8038]
gi|260754991|ref|ZP_05867339.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260758207|ref|ZP_05870555.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260762034|ref|ZP_05874377.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260884001|ref|ZP_05895615.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|423166655|ref|ZP_17153358.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI435a]
gi|423170971|ref|ZP_17157646.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI474]
gi|423172947|ref|ZP_17159618.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI486]
gi|423178360|ref|ZP_17165004.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI488]
gi|423180401|ref|ZP_17167042.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI010]
gi|423183533|ref|ZP_17170170.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI016]
gi|423185527|ref|ZP_17172141.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI021]
gi|423188662|ref|ZP_17175272.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI259]
gi|62196295|gb|AAX74595.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. 9-941]
gi|189019970|gb|ACD72692.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus S19]
gi|260095757|gb|EEW79634.1| RNA methyltransferase [Brucella abortus NCTC 8038]
gi|260668525|gb|EEX55465.1| RNA methyltransferase [Brucella abortus bv. 4 str. 292]
gi|260672466|gb|EEX59287.1| RNA methyltransferase [Brucella abortus bv. 2 str. 86/8/59]
gi|260675099|gb|EEX61920.1| RNA methyltransferase [Brucella abortus bv. 6 str. 870]
gi|260873529|gb|EEX80598.1| RNA methyltransferase [Brucella abortus bv. 9 str. C68]
gi|374538305|gb|EHR09813.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI474]
gi|374544139|gb|EHR15617.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI435a]
gi|374544466|gb|EHR15943.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI486]
gi|374545141|gb|EHR16604.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI488]
gi|374547932|gb|EHR19384.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI010]
gi|374548361|gb|EHR19809.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI016]
gi|374559224|gb|EHR30613.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI259]
gi|374560237|gb|EHR31620.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus bv. 1
str. NI021]
Length = 286
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + ++++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|238882262|gb|EEQ45900.1| hypothetical protein CAWG_04239 [Candida albicans WO-1]
Length = 470
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 92/353 (26%), Positives = 145/353 (41%), Gaps = 114/353 (32%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMA-ENMGIS 348
+ + ++G PV A L A R LY + NN ++K+A E GI
Sbjct: 153 IFDYVFGTHPVKAVLMAGKRRILDLY-------TFNNED-------PDIVKLAMEKYGIV 198
Query: 349 IKE-TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL----------------------- 384
K K+ LN++ N H G+VL + L++ IKE+
Sbjct: 199 PKRLKDKNALNILCKNGVHNGVVLKTNKLDIPYIKEVGHAENGEYKLAIEELDDAAAVDD 258
Query: 385 --------------DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN 430
D I E+ L + LDE+TDPQN+G+I+RSAYFFG +V+ +
Sbjct: 259 DGEVKVKTKKVIRDDDIEQIEELYPLSLYLDEITDPQNMGSILRSAYFFGVDFIVVPNHS 318
Query: 431 SAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV--------- 481
+A L V +KAS+G+L+L+++ + ++F+ S +NGW V+ V + V
Sbjct: 319 TAKLGPVANKASAGALDLIDIYQTGSSLKFIDSVRQNGWHVISTVVDQQVVQSLKKLPML 378
Query: 482 ----------------------------PLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
L I P +L++GSEG+G+R ++ +
Sbjct: 379 RMMSRMMPMSMLMLMLINHIKNKFIELQDLRTILKKTPVMLIIGSEGSGVRTNMKIRSDY 438
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
LV IP + + N V+SLN VA GV+L +
Sbjct: 439 LVGIP-------------KIRRNDN-----------IVDSLNAGVATGVILQN 467
>gi|401680120|ref|ZP_10812044.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. ACP1]
gi|400219247|gb|EJO50118.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. ACP1]
Length = 245
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 35/241 (14%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K K G ++ +A++ G+ ++ T +N + PHQG++ + +E + E+ S
Sbjct: 30 KVKTGLSDIVGLAKSKGVEVRPTPVKQMNRYETDVPHQGVIAFVNAVEFKDLGEVLQESN 89
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
E+ L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E +
Sbjct: 90 HEN--PLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAGAVEQI 147
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
L N+ Q + + G+ VLG + L E PT+LV+G+EG G+ +V+
Sbjct: 148 PLVQVGNVTQTIKQLQKQGFWVLGAHMEGDRT-LYEADLTIPTVLVIGNEGKGISRVVKE 206
Query: 510 SCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C LV IP GN+ SLN SVAA +L++
Sbjct: 207 ACDFLVTIPMYGNL------------------------------NSLNASVAAAILMYEA 236
Query: 568 V 568
V
Sbjct: 237 V 237
>gi|164686508|ref|ZP_02210536.1| hypothetical protein CLOBAR_00073 [Clostridium bartlettii DSM
16795]
gi|164604519|gb|EDQ97984.1| RNA methyltransferase, TrmH family, group 3 [Clostridium bartlettii
DSM 16795]
Length = 248
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/232 (28%), Positives = 117/232 (50%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+K++ MA+ + I+ KH L+ + + HQG++ S + ++++L I+ + +
Sbjct: 39 KKIIGMAKEKNVVIQYVDKHKLDEISTSHSHQGVIAVVSDYKYYELEDLLAIARERGEDP 98
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LDE+TDP NLG IIR+A GA GV++ + S ++ VV+KAS+G++E + +
Sbjct: 99 FFIILDEITDPHNLGTIIRTADAVGAHGVIIPKRRSVHITSVVAKASAGAVEYVPVCKVT 158
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + + G + + ++ P LV+GSEG G+ LV+++C +V
Sbjct: 159 NIANTIKQLKKEGLWIAAADMDGGVFYEQDLT--GPLALVIGSEGFGVSRLVKQNCDFVV 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++P GN V SLN SVA G+LL+ +
Sbjct: 217 KMP----------------MIGN------------VSSLNASVAGGILLYEI 240
>gi|451817041|ref|YP_007453242.1| RNA methyltransferase, TrmH family group 3 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783020|gb|AGF53988.1| RNA methyltransferase, TrmH family group 3 [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 292
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 113/231 (48%), Gaps = 29/231 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ +A+ I IKE K L+ + HQG++ +P ++ ++ + ++ ++
Sbjct: 86 IVSLAKEKRILIKEVDKRKLDSMCEGEAHQGVIAKITPYRYSEVSDILAFAKEKGESPFI 145
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
V LDE+ DP NLG+I+R+A FG G+++ + SA +S V K+S G++E +++ N+
Sbjct: 146 VILDEIEDPHNLGSIVRTAELFGVHGIIIPKRRSASVSTTVYKSSVGAIEHVKIAKVTNI 205
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ E G V G + + ++ P +++G+EG G+ L + C L++I
Sbjct: 206 NTVIEELKEKGIWVYGADIRADEYSY-QVDFSGPCAVIIGNEGRGISKLTVQKCDKLIKI 264
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
P G+I+ SLN SVA G++++ ++
Sbjct: 265 P-------MVGKIN---------------------SLNASVAGGIIMYEVL 287
>gi|334140917|ref|YP_004534123.1| rRNA methylase [Novosphingobium sp. PP1Y]
gi|333938947|emb|CCA92305.1| rRNA methylase [Novosphingobium sp. PP1Y]
Length = 269
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVL+ PL+ V + ++ D D A + LD+VTDP N+GAI+RSA
Sbjct: 91 LVARDAPHQGLVLECEPLDDVFLADV----LDGDPARPVLVLDQVTDPHNVGAIMRSALA 146
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
F A +V +++ P SG ++K++SG+LE + N+ + L AE G+ LG +
Sbjct: 147 FNACAIVTQDRHAPPESGTLAKSASGALETLPWVRVVNLARALEEIAEAGYWRLGLDGEA 206
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+A L E P P LVLG+EG G+R + + C + ++P
Sbjct: 207 EAT-LAEALPAGPVALVLGAEGDGMRHNIVQHCDAVAKLP 245
>gi|357412034|ref|YP_004923770.1| TrmH family RNA methyltransferase [Streptomyces flavogriseus ATCC
33331]
gi|320009403|gb|ADW04253.1| RNA methyltransferase, TrmH family, group 3 [Streptomyces
flavogriseus ATCC 33331]
Length = 318
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/282 (29%), Positives = 126/282 (44%), Gaps = 41/282 (14%)
Query: 288 KMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGI 347
K E + G PV AL LYVQ+ + D++ E + E I
Sbjct: 71 KGTSEMVVGRNPVFEALRDGV-PATTLYVQQYID--------NDERVREALQLAGERGNI 121
Query: 348 SIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
++ E + +L+ + HQGLVL P E ++L + D ++ L VALD VTDP+
Sbjct: 122 NLMEAPRPELDRMTNGLNHQGLVLQVPPYEYAHPEDLTSAAYDNNEDPLIVALDGVTDPR 181
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGAI+RS FG GVV+ + +A ++ K+S+G+ + N+ + L +
Sbjct: 182 NLGAIVRSVSAFGGHGVVVPERRAAGMTAGAWKSSAGTAARTPVSRVTNLTRALEGYQKA 241
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNIPVDV 525
G V+G + + + P ++V+GSEG GL LV +C + VRI PG
Sbjct: 242 GLTVVGLAADGEHTVEDLEALAGPVVIVIGSEGKGLGRLVGETCDYRVRISMPG------ 295
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN VAAG++L+ +
Sbjct: 296 ------------------------GAESLNAGVAAGIVLYEV 313
>gi|171741926|ref|ZP_02917733.1| hypothetical protein BIFDEN_01025 [Bifidobacterium dentium ATCC
27678]
gi|283457050|ref|YP_003361614.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
gi|171277540|gb|EDT45201.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
dentium ATCC 27678]
gi|283103684|gb|ADB10790.1| SpoU rRNA methylase family protein [Bifidobacterium dentium Bd1]
Length = 329
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+++++A G+ + E + +++ + + HQG+V+ A P + + EL + + +A
Sbjct: 103 EIVRLAGIHGLHLMEADRLEMDRIARSSNHQGIVMKAQPFQYSSLAELVERADKKSRAME 162
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 AANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + S E G+ +G A+ P ++VLGSEG G
Sbjct: 223 AGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP S M VESLN SVAAG+
Sbjct: 283 LSRLVRSTCDVIAGIP---------------------------MSSM-VESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 TLY 317
>gi|161830029|ref|YP_001596726.1| RNA methyltransferase [Coxiella burnetii RSA 331]
gi|161761896|gb|ABX77538.1| RNA methyltransferase, TrmH family, group 3 [Coxiella burnetii RSA
331]
Length = 270
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V L A + LYVQE +D + + +++ A+ +G+ + S
Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQE----------NRDDQRLQSLVEKAKGLGVKVILLS 76
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +
Sbjct: 77 RTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACL 135
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G
Sbjct: 136 RSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVG 195
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 196 TAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP--------------- 239
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GS VESLNVSVA G+ L+ +
Sbjct: 240 ----LRGS---------VESLNVSVACGICLYEV 260
>gi|428220579|ref|YP_007104749.1| rRNA methylase [Synechococcus sp. PCC 7502]
gi|427993919|gb|AFY72614.1| rRNA methylase, putative, group 3 [Synechococcus sp. PCC 7502]
Length = 469
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/293 (26%), Positives = 140/293 (47%), Gaps = 21/293 (7%)
Query: 227 GTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNR-QENSGRTTWKEAAPST 285
G+ EG+++E K+ R+S + K+ QR++R ++NS T
Sbjct: 162 GSDRPEGKKIERSEGRKFIATRSSDLKGFKSE------QRFDRNKDNSDSQTSASYDLEE 215
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
P ++ YG V +A+S R + ++V L + + + ++ A+ +
Sbjct: 216 NPDLI----YGRHAVSSAISEGGRSIHRIWVTPKLRYAPD---------FLPLVTAAKAI 262
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
G I E LN + HQG+V + E V++ EL + + + + D +TD
Sbjct: 263 GAVIDEVDISRLNQITNYAKHQGIVAQVAAYEYVELDELIATAKAKSNQPVIIVADSITD 322
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P NLGAIIRSA GA G+V+ + + ++ V+K ++G+LE + N+ + L
Sbjct: 323 PHNLGAIIRSAEALGAQGIVIPQRRAVGVTSAVAKVAAGALENFPVARVINLNRALEQLK 382
Query: 466 ENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G+ + G+ + P++++ LV+G+EG GL ++RSC LV IP
Sbjct: 383 TDGFWIY-GTAADAGQPVHKVKFDGAIALVVGAEGEGLSLTIQRSCDILVSIP 434
>gi|358395725|gb|EHK45112.1| hypothetical protein TRIATDRAFT_79840 [Trichoderma atroviride IMI
206040]
Length = 543
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/324 (26%), Positives = 136/324 (41%), Gaps = 81/324 (25%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AAL R+ Y L++ G NRK D K + ++AE G+ I
Sbjct: 218 LYGKSVVKAALEQGRRKLYKLFIYGG-----ENRK--DSKDNAIITRLAERRGVPITIIP 270
Query: 354 KHD---LNMVVGNRPHQGLVLDASPLEMVKIK----------------ELD--------- 385
D ++ + RPH G VL+ SPL + +K ELD
Sbjct: 271 NEDQRLMDKMSMGRPHNGFVLETSPLPRLPVKSLSRLEETPGKLGFHVELDYQSKEEESI 330
Query: 386 -------PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVV 438
P D + L+E+ DP NLG I+R+A + G V + ++S+ L+ VV
Sbjct: 331 NGQDTFIPRKNDNAPKPFVLLLNEILDPGNLGGILRTASYLGVDAVGITNRSSSTLTPVV 390
Query: 439 SKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS--------------VSSKAVPLN 484
K+++G++E + + ++ + F+ S + GW+ +S+ V
Sbjct: 391 LKSAAGAVEEITIFSVDSPISFIEESKKAGWKTYAAVAPPDPKLMQRHDKFISTANVEEQ 450
Query: 485 EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQ 544
+ P ILVLG+EG GL ++ + + + +P
Sbjct: 451 QPLASHPCILVLGNEGYGLSKPIKVAADYELSVP-------------------------Y 485
Query: 545 FQSFMAVESLNVSVAAGVLLHHLV 568
F +V+SLNVSVAAG+L H V
Sbjct: 486 FVRNSSVDSLNVSVAAGLLCHSFV 509
>gi|316933379|ref|YP_004108361.1| TrmH family RNA methyltransferase [Rhodopseudomonas palustris DX-1]
gi|315601093|gb|ADU43628.1| RNA methyltransferase, TrmH family, group 3 [Rhodopseudomonas
palustris DX-1]
Length = 275
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/276 (30%), Positives = 136/276 (49%), Gaps = 41/276 (14%)
Query: 259 TEKPEYQRWNRQENSGRTTWKEAA-PSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
+++P R++R++ R + A + G+G LYG V AAL+ R+F L
Sbjct: 2 SDRPPNSRFSRRDGPPRGKPRPAGFRRDARERDGDGPVILYGWHTVTAALANPRRKFRKL 61
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE--TSKHDLNMVVG-NRPHQGLVL 371
++ E + RK D EN+ I +++ +G + HQG++
Sbjct: 62 WLTENAA-----RKLAD-----------ENIDTRIAPEIVRPSEIDRRLGPDAVHQGMLA 105
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+A LE +I L + + + LD++TDP N+GAI+RSA F +V A++S
Sbjct: 106 EADALETPRIDTLP-------EHGIVLVLDQITDPHNVGAILRSAAAFAVQAIVTTARHS 158
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIP 487
+GV++K++SG+LEL+ L N+ + L E G+ +G G AV L
Sbjct: 159 PEATGVLAKSASGALELVPLVLVQNLSRALTELNERGFLTVGLDSEGEDDLAAVALR--- 215
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
QP LVLG+EG GLR L ++CT + R+ PG I
Sbjct: 216 --QPLALVLGAEGKGLRQLTRQTCTTVARLDMPGEI 249
>gi|237745438|ref|ZP_04575918.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
gi|229376789|gb|EEO26880.1| RNA methyltransferase [Oxalobacter formigenes HOxBLS]
Length = 248
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 114/240 (47%), Gaps = 32/240 (13%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
+ ++ D++ + +LK A+ GI I L+ +VG R HQG+V A+PL + + LD
Sbjct: 29 DSERSDRR-MQDLLKAAKAAGIRIIAADSQRLDKMVGTRRHQGVVAMAAPLSLAR--NLD 85
Query: 386 PISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS 445
+ + A L + LD +TDP NLGA +R A GA V+ SA ++ V K +SG+
Sbjct: 86 ELLDSIEGAPLLLVLDGITDPHNLGACLRVADSVGAHAVIAPKDRSAGINATVEKVASGA 145
Query: 446 LELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
E + N+ + L E V+G + S L E T V+GSEG G+R
Sbjct: 146 AETVPYITVTNLARTLRQLKERDIWVVGTADDSDK-SLYEPDYAGGTAFVMGSEGEGMRR 204
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
L + +C LV IP F +VESLN+SVA+G+ L+
Sbjct: 205 LTKETCDELVAIP----------------------------MFGSVESLNISVASGICLY 236
>gi|393725532|ref|ZP_10345459.1| RNA methyltransferase [Sphingomonas sp. PAMC 26605]
Length = 248
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/185 (37%), Positives = 99/185 (53%), Gaps = 6/185 (3%)
Query: 336 EKVLKMAENMGISIKETSKHDL-NMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
E + + N I I DL +V G+ PHQGLV++ PLE + + +L A DQ
Sbjct: 44 EAIANIEFNPAIPIVYAQATDLARLVPGDAPHQGLVIEVDPLEDIWLADLLEQGAG-DQR 102
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
L + LD VTDP N+GAI+RSA F A G+V +N+ P SG +++++SG+LEL+
Sbjct: 103 PLLI-LDGVTDPHNVGAILRSAAAFDALGIVTPDRNAPPESGTIARSASGALELVPWVRV 161
Query: 455 NNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
N+ + L AE G WR+ G L + Q LVLG+EG G+R C
Sbjct: 162 TNLARALEEIAEAGFWRI--GLTGDSEQTLAKAMGTQRIALVLGAEGEGMRQNTAAHCDE 219
Query: 514 LVRIP 518
L ++P
Sbjct: 220 LAKLP 224
>gi|294630049|ref|ZP_06708609.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
gi|292833382|gb|EFF91731.1| TrmH family RNA methyltransferase [Streptomyces sp. e14]
Length = 335
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/255 (31%), Positives = 125/255 (49%), Gaps = 38/255 (14%)
Query: 312 YALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371
+ LYVQ+ + D++ E + AE GI++ E + +L+ + HQGLVL
Sbjct: 111 HTLYVQQFID--------NDERVREALQLAAERGGINLMEAPRPELDRMTNGLNHQGLVL 162
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
P E ++L +AD + L VALD VTDP+NLGA++RS FG GVV+ + +
Sbjct: 163 QVPPYEYAHPEDLADAAADAGEDPLIVALDGVTDPRNLGAVVRSVSAFGGHGVVVPERRA 222
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ- 490
A ++ K S+G+ + N+ + L + G V+G + +A L ++ +
Sbjct: 223 AGMTAGAWKTSAGTAARTPVARATNLTRALEQYQKAGLTVVGLAADGEA-ELGDLDALEG 281
Query: 491 PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMA 550
P ++V+GSEG GL LV +C VRIP +P G A
Sbjct: 282 PVVIVVGSEGKGLSRLVGETCDVRVRIP--MP-----------------GGA-------- 314
Query: 551 VESLNVSVAAGVLLH 565
ESLN VAAG++L+
Sbjct: 315 -ESLNAGVAAGIVLY 328
>gi|56417006|ref|YP_154080.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
gi|222475374|ref|YP_002563791.1| tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str. Florida]
gi|56388238|gb|AAV86825.1| hypothetical protein AM915 [Anaplasma marginale str. St. Maries]
gi|222419512|gb|ACM49535.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Florida]
Length = 261
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 13/216 (6%)
Query: 321 SLSSNNRKKKDK-------KGYEKVLKMAENMGISIKETSKHDLNMVVGN--RPHQGLVL 371
+L + NR +D K Y +V +MA++ G+ K + ++ ++G+ HQG+ L
Sbjct: 22 ALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQGIAL 81
Query: 372 DASPL---EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
L + K++ D +SA+ +AS V LD VTD N+GAI+RSA F A V+L
Sbjct: 82 MVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILPE 141
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+S S ++KASSG+ +++ + N+++ + +NG+ G L+EI
Sbjct: 142 HHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDK-ALHEISF 200
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
+ ++LGSEG G+R L C HLV+IP + +D
Sbjct: 201 CERRAIILGSEGKGIRRLTREHCDHLVKIPMSARID 236
>gi|417821901|ref|ZP_12468514.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE39]
gi|340035937|gb|EGQ96914.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HE39]
Length = 236
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/238 (32%), Positives = 113/238 (47%), Gaps = 32/238 (13%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
VL +G+SI+E S+ L+ HQGL+ P + +LD I A +Q L
Sbjct: 29 VLNELMRLGVSIQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLL 88
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
V LD VTDP NLGA +R+A G + V++ SAPL+ VSK + G+ E + L N+
Sbjct: 89 V-LDGVTDPHNLGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNL 147
Query: 458 MQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + + E G W V G+ + + P +V+G+EG G+R L +C L++
Sbjct: 148 ARTMRALQEKGVWFV--GTAGEATHDIYQSKLTGPLAIVMGAEGDGMRRLTRETCDDLIK 205
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
IP AG +V SLNVSVA GV L V +++N
Sbjct: 206 IP-------MAG---------------------SVSSLNVSVACGVCLFEAVRQRMAN 235
>gi|407475974|ref|YP_006789851.1| TrmH family RNA methyltransferase [Exiguobacterium antarcticum B7]
gi|407060053|gb|AFS69243.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
antarcticum B7]
Length = 254
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 134/274 (48%), Gaps = 44/274 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK-MAENMGISIKET 352
LYG PVL AL RE L++QEG +KG V+ MA+ G+ +
Sbjct: 12 LYGRNPVLEALRTG-REMNKLFIQEG-----------QQKGPLAVIHAMAKEAGVQTQIV 59
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ L+ + G+ HQG+V + E ++ ++ ++ +D+ L + LDE+ DP NLG+I
Sbjct: 60 PRSKLHGLTGSDNHQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSI 119
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV 471
+R+A GA GV++ + S L+ VV+KAS+G++E + + N+ + + + G W V
Sbjct: 120 LRTADAVGAHGVIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFV 179
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G+ + ++ + P +V+GSEG G+ LV C LV +P AG
Sbjct: 180 --GTDARESDDYRTLDGTMPLGIVIGSEGKGMSRLVREKCDFLVHLP-------MAGH-- 228
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SLN SVAA +LL+
Sbjct: 229 -------------------VTSLNASVAASLLLY 243
>gi|429757819|ref|ZP_19290349.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 181 str. F0379]
gi|429174410|gb|EKY15887.1| RNA methyltransferase, TrmH family, group 3 [Actinomyces sp. oral
taxon 181 str. F0379]
Length = 328
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/242 (28%), Positives = 120/242 (49%), Gaps = 37/242 (15%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD + E+V+++A +G + E ++ DL++ HQG+ ++ E +++L S
Sbjct: 110 KDDR-VEEVVRLASGLGAPVYEVTRRDLDVATDGAVHQGVAIEVRGYEYRDVEDLIADSL 168
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD+VTDP NLGA++RS+ FGA GV++ + SA ++ K S+G+ +
Sbjct: 169 QQLGIPLLVALDQVTDPHNLGAVLRSSGAFGADGVIIPERRSAGVNTTAWKVSAGAAARV 228
Query: 450 ELRYCNNMMQFLVSSAENGWRVL----GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+++ L + G+ V+ GG + + L + P ++V G+EG GL
Sbjct: 229 PVARATNLVRALEDCKKAGFFVVGLDGGGDTELRDLKLAD----GPLVVVTGAEGNGLSR 284
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV ++C +V IP +VESLN +VA G+ L+
Sbjct: 285 LVRQTCDQIVSIP----------------------------IASSVESLNAAVATGIALY 316
Query: 566 HL 567
+
Sbjct: 317 EV 318
>gi|17987024|ref|NP_539658.1| 23S rRNA methyltransferase RumA [Brucella melitensis bv. 1 str.
16M]
gi|17982677|gb|AAL51922.1| 23S ribosomal RNA methyltransferase [Brucella melitensis bv. 1 str.
16M]
Length = 303
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/271 (28%), Positives = 130/271 (47%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 32 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 89
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + A+++ ++ D++ G+ HQG++++
Sbjct: 90 ------------RMRATRNGFARLEIGEADSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 137
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ + +S
Sbjct: 138 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSHHSP 190
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 191 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 249
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 250 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 280
>gi|255003358|ref|ZP_05278322.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Puerto Rico]
gi|255004482|ref|ZP_05279283.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Virginia]
Length = 251
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/216 (31%), Positives = 115/216 (53%), Gaps = 13/216 (6%)
Query: 321 SLSSNNRKKKDK-------KGYEKVLKMAENMGISIKETSKHDLNMVVGN--RPHQGLVL 371
+L + NR +D K Y +V +MA++ G+ K + ++ ++G+ HQG+ L
Sbjct: 12 ALQNPNRVCRDMLVTGEFLKKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQGIAL 71
Query: 372 DASPL---EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
L + K++ D +SA+ +AS V LD VTD N+GAI+RSA F A V+L
Sbjct: 72 MVDELSGRDGSKLRVEDIVSANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILPE 131
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+S S ++KASSG+ +++ + N+++ + +NG+ G L+EI
Sbjct: 132 HHSPSESCTITKASSGAADIVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDK-ALHEISF 190
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
+ ++LGSEG G+R L C HLV+IP + +D
Sbjct: 191 CERRAIILGSEGKGIRRLTREHCDHLVKIPMSARID 226
>gi|310288277|ref|YP_003939536.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
gi|311065139|ref|YP_003971865.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
PRL2010]
gi|313141076|ref|ZP_07803269.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
41171]
gi|421733648|ref|ZP_16172748.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum LMG
13195]
gi|421735530|ref|ZP_16174450.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum IPLA
20015]
gi|309252214|gb|ADO53962.1| SpoU rRNA methylase family protein [Bifidobacterium bifidum S17]
gi|310867459|gb|ADP36828.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum
PRL2010]
gi|313133586|gb|EFR51203.1| tRNA/rRNA methyltransferase protein [Bifidobacterium bifidum NCIMB
41171]
gi|407078397|gb|EKE51203.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum LMG
13195]
gi|407297185|gb|EKF16647.1| RNA/rRNA methyltransferase protein [Bifidobacterium bifidum IPLA
20015]
Length = 332
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA-- 394
+++K+A + + E + +++ + + HQG+VL P + + EL I+ + +A
Sbjct: 103 EIIKLAGAQSLHLLEADRLEMDRIARSSNHQGVVLKVQPYQYSSLAELADIAERKAKAMD 162
Query: 395 ------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 VVNSPSARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ + + N+ + + S E G+ +G + P I+VLGSEG G
Sbjct: 223 AGAAAHIPVARVVNLTKAIESMRERGYYTVGLDGGGDKLVGETGFETDPLIVVLGSEGKG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV SC + IP +T+ VESLN SVAAG+
Sbjct: 283 LSRLVRESCDAIAGIP------ITS----------------------MVESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 SLY 317
>gi|365892843|ref|ZP_09431079.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. STM 3809]
gi|365331061|emb|CCE03610.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. STM 3809]
Length = 276
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 90/162 (55%), Gaps = 18/162 (11%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I LDP + + LD++TDP N+GAI+RSA F +V
Sbjct: 102 HQGLLAEADPLPSPDIDTLDP-------EGMILVLDQITDPHNVGAILRSAAAFDVKAIV 154
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAV 481
A++S +GV++K++SG+LEL+ + N+ + L E G++ +G G AV
Sbjct: 155 TTARHSPEATGVLAKSASGALELVPIITVQNLARALARLNERGFQTVGLDSAGDTDIAAV 214
Query: 482 PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
L QP LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 215 ALR-----QPLALVLGAEGKGLRQLTRETCSVVARLDMPGAI 251
>gi|86610253|ref|YP_479015.1| RNA methyltransferase [Synechococcus sp. JA-2-3B'a(2-13)]
gi|86558795|gb|ABD03752.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
JA-2-3B'a(2-13)]
Length = 378
Score = 100 bits (250), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/294 (28%), Positives = 132/294 (44%), Gaps = 41/294 (13%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG VLAAL ++ +++ L S + +L+ A+ G I E
Sbjct: 106 EIIYGRQTVLAALKSQA-TLNRVWILPKLRYSPQ---------FLSLLEEAKARGTVIDE 155
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S LN + HQG+ A+P + V +++L S + V LD + DP NLGA
Sbjct: 156 VSPKRLNALTAGANHQGIAAQATPYQYVALEDLVERSRQAGPNPVLVVLDGIQDPHNLGA 215
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I RS FG G+V+ + +A ++ V K ++G+L + + N+ + L E G+ V
Sbjct: 216 IARSVEAFGMQGMVIPQRRAAGVTSTVMKVAAGALSTLPVARVVNLNRALEYLKEQGFWV 275
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G + S A P+ +P LV+GSEG G+ L +R C L+ IP AG
Sbjct: 276 YG-TTSRGADPIYSADFQRPIALVVGSEGEGISLLTQRHCDQLLSIP-------LAGR-- 325
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTAT 585
ESLN SVAAG+ L+ + H+ + H++ T
Sbjct: 326 -------------------TESLNASVAAGIALYEI--HRQRSPHHLKRPEVDT 358
>gi|317126031|ref|YP_004100143.1| TrmH family RNA methyltransferase [Intrasporangium calvum DSM
43043]
gi|315590119|gb|ADU49416.1| RNA methyltransferase, TrmH family, group 3 [Intrasporangium calvum
DSM 43043]
Length = 320
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 30/232 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++ LK+A G+ I E + +L+ + HQGL L P E ++L + ++
Sbjct: 113 KEALKLATERGLPILEAPRGELDRLTDGAVHQGLALQVPPYEYADPRDL--VDPEQPGVP 170
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L VALD +TDP+NLGAI+RS FG GVV+ + S ++ K S+G+ + +
Sbjct: 171 LIVALDGITDPRNLGAIVRSVAAFGGHGVVVPERRSVGMTASAWKTSAGAAARIPVAKAG 230
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L G+ VLG + + +P ++V GSEG GL LV +C +V
Sbjct: 231 NLTRALEDFKRAGFFVLGLDMDGDVQLPDLTLAAEPLVVVTGSEGKGLSRLVRETCDQIV 290
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
IP + AVESLN +A GV L+ +
Sbjct: 291 SIPMS----------------------------SAVESLNAGLATGVALYEI 314
>gi|449115791|ref|ZP_21752251.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
H-22]
gi|448955277|gb|EMB36044.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
H-22]
Length = 258
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + +++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKVEKQDNQFLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E ++ V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKGSAFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++GSEG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPDLTFP--KKTVLIMGSEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|420244343|ref|ZP_14748142.1| rRNA methylase, putative, group 3 [Rhizobium sp. CF080]
gi|398054502|gb|EJL46619.1| rRNA methylase, putative, group 3 [Rhizobium sp. CF080]
Length = 292
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 132/276 (47%), Gaps = 29/276 (10%)
Query: 250 SFRRDVK-ARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKT 308
+ RR V+ AR E+ E + WK P P+ V LYG+ V AAL
Sbjct: 18 TLRRAVRDARRERGEIPTPPLKRPKSNKDWK--PPQLQPEQVF--LYGLHTVRAALDNPE 73
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRP-HQ 367
R+ L S++ N + + + E + ++ S D++ V+G HQ
Sbjct: 74 RKLIKL------SVTQNAFARLE-------IGEPETLSFPVEFVSPQDIDKVLGPEAIHQ 120
Query: 368 GLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
G++L+ PL + +++ L + L + LD+VTDP N+GAI+RSA FGA V+
Sbjct: 121 GVMLETRPLPVRRLEALK-------ASPLLLVLDQVTDPHNVGAIMRSAVAFGAGAVITT 173
Query: 428 AKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP 487
++S SGV++K++SG+LEL+ N+ + G++ +G S PL
Sbjct: 174 QRHSPTESGVLAKSASGALELIPYIQITNLADAIEELHRLGFQTIGLD-SEGPAPLEGTF 232
Query: 488 PGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G LVLGSEG GLR + T L R+ PG I
Sbjct: 233 AGGRIALVLGSEGKGLRQKTRETVTALARLDMPGAI 268
>gi|395237668|ref|ZP_10415708.1| RNA methyltransferase, TrmH family [Turicella otitidis ATCC 51513]
gi|423351367|ref|ZP_17329018.1| RNA methyltransferase, TrmH family, group 3 [Turicella otitidis
ATCC 51513]
gi|394487017|emb|CCI83796.1| RNA methyltransferase, TrmH family [Turicella otitidis ATCC 51513]
gi|404386596|gb|EJZ81748.1| RNA methyltransferase, TrmH family, group 3 [Turicella otitidis
ATCC 51513]
Length = 315
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 133/307 (43%), Gaps = 47/307 (15%)
Query: 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQ 317
R P +QR + E R K + P+ E + G PV+ L A L Q
Sbjct: 41 RVYHPAHQR--KLERERRRQGKNSGPTN------ELVVGRNPVIECLEAGVPALRLLVAQ 92
Query: 318 EGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLE 377
+ R K + +A + I E + +L+ GN HQG+ ++ P +
Sbjct: 93 ---GTGHDER-------LSKAVDLATKDNVPIDEVPRFELDRRAGNTLHQGIGVEIPPYQ 142
Query: 378 MVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGV 437
++L + + L V LD +TDP+NLGA+IRS FG GV++ + +A ++ V
Sbjct: 143 YATPRDLLDAAHQSGEPGLVVMLDNITDPRNLGAVIRSTAAFGGHGVIIPERRTAAVTAV 202
Query: 438 VSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLG 497
+ S+G+ + + N+ + + + ++V+G A L++ P +LV+G
Sbjct: 203 AWRTSAGTAARLPVARATNLNRTIKEFQKENYQVVGLEAGGDAT-LDDYDATTPVLLVIG 261
Query: 498 SEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVS 557
SEG GL LV +C L+ IP AD VESLN S
Sbjct: 262 SEGKGLSRLVRENCDTLLSIP---------------TAD-------------WVESLNAS 293
Query: 558 VAAGVLL 564
VAAG +L
Sbjct: 294 VAAGAVL 300
>gi|374853203|dbj|BAL56117.1| RNA methyltransferase, TrmH family [uncultured gamma
proteobacterium]
Length = 252
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 129/273 (47%), Gaps = 41/273 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ VLA L+ ++ +RK++D K ++ + + E +GI +
Sbjct: 5 LFGLHAVLAVLANGPERVVRAWL---------DRKRRDFK-FQALRERLEGLGIPAEAVE 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW-VALDEVTDPQNLGAI 412
+ L+ + G+ HQG+VL+ + ++L+ + +D SLW + LD+ DP NLGA
Sbjct: 55 RARLDRLAGSAHHQGVVLEVVLPDEQDEEDLEAVLT-KDAKSLWFLVLDQAQDPHNLGAC 113
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+ GASGV++ S L+ V K +SG+ E M L N+ + L E G ++
Sbjct: 114 LRTCDAVGASGVIVPKDQSCGLTPTVCKVASGAAETMPLYRVTNLARTLRRLKEAGLWIV 173
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G + + G P LVLG EG GLR L +C LVR+P
Sbjct: 174 GAASDGDRLAFAADLKG-PLALVLGGEGKGLRRLTREACDVLVRLP-------------- 218
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
G+ V SLN++VAAGVLL+
Sbjct: 219 -----MRGT---------VASLNLAVAAGVLLY 237
>gi|254995184|ref|ZP_05277374.1| Putative tRNA/rRNA methyltransferase TrmH [Anaplasma marginale str.
Mississippi]
Length = 244
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 108/197 (54%), Gaps = 6/197 (3%)
Query: 333 KGYEKVLKMAENMGISIKETSKHDLNMVVGN--RPHQGLVLDASPL---EMVKIKELDPI 387
K Y +V +MA++ G+ K + ++ ++G+ HQG+ L L + K++ D +
Sbjct: 24 KKYPEVARMAQSKGVYPKRVAAEKISKILGHGGMAHQGIALMVDELSGRDGSKLRVEDIV 83
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
SA+ +AS V LD VTD N+GAI+RSA F A V+L +S S ++KASSG+ +
Sbjct: 84 SANPSEASTVVILDRVTDINNVGAIVRSAACFDADAVILPEHHSPSESCTITKASSGAAD 143
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
++ + N+++ + +NG+ G L+EI + ++LGSEG G+R L
Sbjct: 144 IVPVVQVGNLVKTMEYLKQNGYWCYGMDAGGDKA-LHEISFCERRAIILGSEGKGIRRLT 202
Query: 508 ERSCTHLVRIPGNIPVD 524
C HLV+IP + +D
Sbjct: 203 REHCDHLVKIPMSARID 219
>gi|282850301|ref|ZP_06259680.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
ATCC 17745]
gi|294793809|ref|ZP_06758946.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
3_1_44]
gi|282579794|gb|EFB85198.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
ATCC 17745]
gi|294455379|gb|EFG23751.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
3_1_44]
Length = 243
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 35/241 (14%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
K K G ++ +A++ GI ++ T +N PHQG++ S ++ ++ E+ +
Sbjct: 30 KVKTGLADIVNLAKSQGIEVRPTPVKQMNKYDLEVPHQGVIALVSAVQFKELGEV--LQE 87
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E +
Sbjct: 88 TTHEVPLLILTDGVEDPHNMGAIIRTAECAGATAVLIPKRHNAPINATVAKTSAGAIEQI 147
Query: 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVER 509
L N++Q + + G+ V+G + L E PT++V+G+EG G+ +V+
Sbjct: 148 PLVQIGNVVQTIKQLQKQGFWVMGAHMEGDRT-LYEADMTIPTVIVIGNEGKGISRVVKE 206
Query: 510 SCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C LV IP GN+ SLN SVAA VL++
Sbjct: 207 ACDFLVTIPMYGNL------------------------------NSLNASVAAAVLMYEA 236
Query: 568 V 568
V
Sbjct: 237 V 237
>gi|306824043|ref|ZP_07457416.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
gi|309800747|ref|ZP_07694882.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
dentium JCVIHMP022]
gi|304552696|gb|EFM40610.1| RNA methyltransferase [Bifidobacterium dentium ATCC 27679]
gi|308222592|gb|EFO78869.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
dentium JCVIHMP022]
Length = 329
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+++++A G+ + E + +++ + + HQG+V+ A P + + EL + + +A
Sbjct: 103 EIVRLAGIHGLHLMEADRLEMDRIARSSNHQGIVMKAQPFQYSSLAELVERADKKSRAME 162
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 AANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + S E G+ +G A+ P ++VLGSEG G
Sbjct: 223 AGAAAHMPVARVVNLTKAIESLKERGYYSIGLDGGGDALVGETGFETDPLVVVLGSEGNG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP S M VESLN SVAAG+
Sbjct: 283 LSRLVRSTCDVIAGIP---------------------------MSSM-VESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 TLY 317
>gi|393774541|ref|ZP_10362903.1| rRNA methylase [Novosphingobium sp. Rr 2-17]
gi|392720024|gb|EIZ77527.1| rRNA methylase [Novosphingobium sp. Rr 2-17]
Length = 283
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 94/162 (58%), Gaps = 9/162 (5%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVL+ + L+ + + ++ D D A V LD+VTDP N+GAI+RSA
Sbjct: 100 LVAKDAPHQGLVLECAALDDIFLDDV----LDGDPARPLVVLDQVTDPHNVGAIMRSAAA 155
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV-LGGSV 476
FGA +V +++ SG ++K++SG+LE++ N+ + L AE G WR+ L G
Sbjct: 156 FGACAIVTQDRHAPLESGTLAKSASGALEVLPWVRVVNLARALEEIAEAGYWRIGLDGEA 215
Query: 477 SSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
S L + P P LVLG+EG G+R + + C + R+P
Sbjct: 216 DST---LAQALPAGPVALVLGAEGEGMRHNITQHCDAIARLP 254
>gi|290968521|ref|ZP_06560060.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
type_1 str. 28L]
gi|335049778|ref|ZP_08542764.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera sp. UPII
199-6]
gi|290781517|gb|EFD94106.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera genomosp.
type_1 str. 28L]
gi|333762273|gb|EGL39777.1| RNA methyltransferase, TrmH family, group 3 [Megasphaera sp. UPII
199-6]
Length = 250
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 29/233 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++++ +A+ I ++E + L+ +V + HQG+ A P+ M + +A +
Sbjct: 38 QEIMSLAKAAHIVVEERDRKALDRLVPQQRHQGVAAQAQPIAMTSWETCAATAARRGEVP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
+V LD + D N+GAIIR+A GA V++ ++SAP++ V K S+G++E M L
Sbjct: 98 FFVLLDGIEDVHNMGAIIRTAECAGAHAVLIPKRHSAPINETVGKTSAGAVEYMPLVSIG 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N Q L + + G+ ++G ++ +A + P +LV+G+EG G+ LV+ +C LV
Sbjct: 158 NTTQVLKALKKAGFWIIGADMNGEADYFHT-DMTMPLVLVIGNEGKGISRLVKENCDILV 216
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+IP F V SLN SVAA +L++ V
Sbjct: 217 QIP----------------------------MFGHVNSLNASVAAALLIYETV 241
>gi|333984320|ref|YP_004513530.1| TrmH family RNA methyltransferase [Methylomonas methanica MC09]
gi|333808361|gb|AEG01031.1| RNA methyltransferase, TrmH family, group 3 [Methylomonas methanica
MC09]
Length = 247
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 139/277 (50%), Gaps = 45/277 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G+ V AAL ++ ++V +++++D + +VL +GI ++T
Sbjct: 6 LFGIHAVQAALDYSPQKIKQVWV---------DQQRQDAR-LTQVLDDLLALGIRPEKTE 55
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADED---QASLWVALDEVTDPQNLG 410
+ L+ + + HQG+V+ +E+ ++ D + D + + + ++ LD+V DP NLG
Sbjct: 56 RKKLDRMADGKNHQGIVV---AVELPAMRSEDQLKQDVEALTETAFYLVLDQVQDPHNLG 112
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
A +R+A GA G+++ N+A ++ V K +SG+ E + + N+ + L E
Sbjct: 113 ACLRTADAVGAHGIIVTKDNAAGITPTVCKVASGAAETVPVYQVTNLARVLRWLKEQNIW 172
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
++G + ++ + ++ P +V+G+EG G+R L + C LV+IP AG+
Sbjct: 173 IMGTAGEAEQT-IYDLKLDMPLAVVMGAEGAGMRHLTRQHCDFLVKIP-------MAGQ- 223
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLNVSVAAGV+L+ +
Sbjct: 224 --------------------VESLNVSVAAGVMLYEV 240
>gi|270284654|ref|ZP_05966454.2| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
gallicum DSM 20093]
gi|270276599|gb|EFA22453.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium
gallicum DSM 20093]
Length = 348
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 46/245 (18%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA-- 394
+++++A G+ I E + +++ + HQG+++ A P + + EL + + +A
Sbjct: 116 EIMRLAGIQGLHILEADRLEMDRIAKGGHHQGVIMKAQPFQYSSLNELADRAERKARAMQ 175
Query: 395 ------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 176 EASNESARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVTAAAWKVS 235
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLG--GSVSSKAVPLNEIPPGQPTILVLGSEG 500
+G+ M + N+ + + E G+ +G GS SK V P I+VLGSEG
Sbjct: 236 AGAAAHMPIARVVNLTKAIEGLKERGYYAVGLDGS-GSKEVGQTGFET-DPLIVVLGSEG 293
Query: 501 TGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
GL L +C + IP S VESLN SVAA
Sbjct: 294 KGLSRLTREACDCIAGIP--------------------------MTSM--VESLNASVAA 325
Query: 561 GVLLH 565
G+ L+
Sbjct: 326 GITLY 330
>gi|215919079|ref|NP_819993.2| RNA methyltransferase [Coxiella burnetii RSA 493]
gi|206583964|gb|AAO90507.2| 23S rRNA Gm2251 methyltransferase [Coxiella burnetii RSA 493]
Length = 270
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V L A + LYVQE +D + + +++ A+ +G+ + S
Sbjct: 27 IYGIHAVSGVLDAAPQRIVKLYVQE----------NRDDQRLQSLVEKAKALGVKVILLS 76
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +
Sbjct: 77 RTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACL 135
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G
Sbjct: 136 RSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVG 195
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 196 TAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP--------------- 239
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GS VESLNVSVA G+ L+ +
Sbjct: 240 ----LRGS---------VESLNVSVACGICLYEV 260
>gi|172056121|ref|YP_001812581.1| RNA methyltransferase [Exiguobacterium sibiricum 255-15]
gi|171988642|gb|ACB59564.1| RNA methyltransferase, TrmH family, group 3 [Exiguobacterium
sibiricum 255-15]
Length = 254
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 135/274 (49%), Gaps = 44/274 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK-MAENMGISIKET 352
LYG PVL AL + RE L++QEG +KG V+ MA+ G+ +
Sbjct: 12 LYGRNPVLEALRSG-REMNKLFIQEG-----------QQKGPLAVIHAMAKEAGVQTQIV 59
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ L+ + G+ HQG+V + E ++ ++ ++ +D+ L + LDE+ DP NLG+I
Sbjct: 60 PRSKLHGLTGSDNHQGVVAAVAAYEYAELDDIFALAEKKDETPLMILLDELEDPHNLGSI 119
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV 471
+R+A GA G+++ + S L+ VV+KAS+G++E + + N+ + + + G W V
Sbjct: 120 LRTADAVGAHGIIIPKRRSVGLTQVVAKASTGAIEHIPVVRVTNLTRTMEDLKKKGIWFV 179
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G+ + ++ + P +V+GSEG G+ LV C LV +P AG
Sbjct: 180 --GTDARESDDYRTLDGTMPLGIVIGSEGKGMSRLVREKCDFLVHLP-------MAGH-- 228
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SLN SVAA +LL+
Sbjct: 229 -------------------VTSLNASVAASLLLY 243
>gi|163849637|ref|YP_001637680.1| RNA methyltransferase [Methylobacterium extorquens PA1]
gi|163661242|gb|ABY28609.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
extorquens PA1]
Length = 268
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 85/275 (30%), Positives = 130/275 (47%), Gaps = 51/275 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PV AL+ R F+ L E N + + G E + I +
Sbjct: 36 LYGWHPVSQALANAGRHFHRLLATE------NALARLKEAGIE--------LPIEPEMVR 81
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
++ ++G + HQGL +A + D + D +L +ALD++TDP N+GAI
Sbjct: 82 PSAIDRLLGPDAVHQGLYAEAE---PLAAPAFDAMPDD----ALLLALDQITDPHNVGAI 134
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A FG + +V A++S +GV++K++SG LE + L N+ + L++ E G+ +
Sbjct: 135 VRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRI 194
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G S L+ + P +P +LVLG+EG GLR C LVRI
Sbjct: 195 GLD-SDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRI--------------- 238
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
DA G A+ SLNVS AA + L+ L
Sbjct: 239 -DATG------------AIRSLNVSNAAAITLYAL 260
>gi|46199993|ref|YP_005660.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
gi|55980265|ref|YP_143562.1| RNA methyltransferase [Thermus thermophilus HB8]
gi|46197620|gb|AAS82033.1| 23S rRNA methyltransferase [Thermus thermophilus HB27]
gi|55771678|dbj|BAD70119.1| RNA methyltransferase, TrmH family [Thermus thermophilus HB8]
Length = 238
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK-VLKMAENMGISIKET 352
+YG PVL AL A R+ +G E +LK E +G
Sbjct: 3 IYGRNPVLEALRA-----------------GRARRVLVARGVEGWLLKELERLGAPYTLV 45
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ +L+ ++ HQG+ + +++ ++A + L VALD VTDP+N GA+
Sbjct: 46 PRIELDTLLRTTHHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAM 105
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSA GA GVV + +APLS + KAS+G+ + + N+ + L + E G V
Sbjct: 106 IRSALALGAHGVVSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVY 165
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G V + P E+ +P +LV+GSEG G+R LV +C L RIP
Sbjct: 166 GLDVRGEKAPW-ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIP 210
>gi|238019168|ref|ZP_04599594.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
gi|416999155|ref|ZP_11939824.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
ACS-068-V-Sch12]
gi|237863867|gb|EEP65157.1| hypothetical protein VEIDISOL_01031 [Veillonella dispar ATCC 17748]
gi|333977308|gb|EGL78167.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
ACS-068-V-Sch12]
Length = 243
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 75/247 (30%), Positives = 123/247 (49%), Gaps = 47/247 (19%)
Query: 330 KDKKGYEKVLKMAENMGIS-----IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
K K G ++ +A++ GI IK+ +K+DL + PHQG++ S V+ KEL
Sbjct: 30 KVKTGLADIVGLAKSQGIEVRPTPIKQMNKYDLEV-----PHQGVIALVSA---VQFKEL 81
Query: 385 DPISADEDQ-ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
+ + + L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+
Sbjct: 82 GEVLQETNHDVPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSA 141
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
G++E + L N+ Q + + G+ V+G + L E PT++V+G+EG G+
Sbjct: 142 GAIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRT-LYEADMTIPTVIVIGNEGKGI 200
Query: 504 RPLVERSCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
+V+ +C LV IP GN+ SLN SVAA
Sbjct: 201 SRVVKEACDFLVTIPMYGNL------------------------------NSLNASVAAA 230
Query: 562 VLLHHLV 568
VL++ V
Sbjct: 231 VLMYEAV 237
>gi|237815670|ref|ZP_04594667.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
2308 A]
gi|297248557|ref|ZP_06932275.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|376273018|ref|YP_005151596.1| TrmH family RNA methyltransferase [Brucella abortus A13334]
gi|237788968|gb|EEP63179.1| RNA methyltransferase, TrmH family, group 3 [Brucella abortus str.
2308 A]
gi|297175726|gb|EFH35073.1| TrmH family RNA methyltransferase [Brucella abortus bv. 5 str.
B3196]
gi|363400624|gb|AEW17594.1| TrmH family RNA methyltransferase [Brucella abortus A13334]
Length = 303
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQENS------GRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K P+ V EG LYG+ V AA+ R+
Sbjct: 32 YARLRRQHRDQKAGAEGKSPRKPQRPAIAASAVAEGTVRLYGLHTVRAAVENPQRKIL-- 89
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + ++++ ++ D++ G+ HQG++++
Sbjct: 90 ------------RMRATRNGFARLEIGESDSLPFPVEIVDPRDIDKETGSEAVHQGVMIE 137
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL ++ L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 138 AEPLRTRKLSELR-------ESPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 190
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 191 QETGVLAKAASGALELIAHIEVRNLAEAIEELHTLGFQTIGLD-SQGPLEMEATLSGNRI 249
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 250 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 280
>gi|17228654|ref|NP_485202.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
gi|17130505|dbj|BAB73116.1| tRNA/rRNA methyltransferase [Nostoc sp. PCC 7120]
Length = 335
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 86/307 (28%), Positives = 141/307 (45%), Gaps = 48/307 (15%)
Query: 278 WKEAAPSTVPKMVGEG--LYGVGPVLAALSAKTREFYALYVQEGLS-LSSNNRKKKDKKG 334
+ ++AP P+ + +YG PVL+AL Q GL+ + R + D +
Sbjct: 66 YSDSAPIPKPQEDNDNDIIYGRHPVLSALQN----------QRGLNRIWVTPRLRYDPRF 115
Query: 335 YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
+ +L+ +N G I E L+ + HQG+ +P + + EL +
Sbjct: 116 HNLILQAKDN-GAVIDEVDTKRLDQITDQANHQGIAAQIAPYSYIDLYELIAQAKTVTDP 174
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
+ VA D +TDP NLGAIIR+A GA G+V+ + ++ ++ V K ++G+LE +
Sbjct: 175 VIVVA-DSITDPHNLGAIIRTAEAIGAQGLVIPQRRASGITSTVVKVAAGALENFPVARV 233
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G+ + G+ + + PL+ + P +LV+GSEG GL L +RSC L
Sbjct: 234 VNLGRALEDLKEAGFWIY-GTAAGGSEPLHTVSFRGPIVLVIGSEGEGLSMLTQRSCDVL 292
Query: 515 VRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
V IP G P SLN SVAAG+ L+ + +
Sbjct: 293 VSIPLMGKTP------------------------------SLNASVAAGMALYEIFRQRS 322
Query: 573 SNNSHIE 579
N +++
Sbjct: 323 LNTLYLD 329
>gi|385801050|ref|YP_005837453.1| TrmH family RNA methyltransferase [Gardnerella vaginalis HMP9231]
gi|333394132|gb|AEF32050.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
HMP9231]
Length = 331
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 93 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 151
Query: 386 PISADEDQAS--------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+ + +A L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 152 DRAEKKSRAMEAADSAAARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 212 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 271
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 272 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 303
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 304 ESLNASVAAGISLY 317
>gi|359400210|ref|ZP_09193199.1| rRNA methylase [Novosphingobium pentaromativorans US6-1]
gi|357598450|gb|EHJ60179.1| rRNA methylase [Novosphingobium pentaromativorans US6-1]
Length = 233
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/160 (37%), Positives = 93/160 (58%), Gaps = 5/160 (3%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVL+ PL+ V + ++ D D A + LD+VTDP N+GAI+RSA
Sbjct: 55 LVARDAPHQGLVLECEPLDDVFLADV----LDGDPARPVLVLDQVTDPHNVGAIMRSALA 110
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
F A +V +++ P SG ++K++SG+LE + N+ + L AE G+ LG +
Sbjct: 111 FNACAIVTQDRHAPPESGTLAKSASGALETLPWVRVVNLARALEEIAEAGYWRLGLDGEA 170
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+A L E P P LVLG+EG G+R + + C + ++P
Sbjct: 171 EAT-LAEALPAGPVALVLGAEGDGMRHNIVQHCDAVAKLP 209
>gi|417556037|ref|ZP_12207099.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
315-A]
gi|333603360|gb|EGL14778.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
315-A]
Length = 331
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 93 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 151
Query: 386 PISADEDQAS--------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+ + +A L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 152 DRAEKKSRAMEAADSAAARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 211
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 212 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 271
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 272 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 303
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 304 ESLNASVAAGISLY 317
>gi|365851759|ref|ZP_09392179.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
parafarraginis F0439]
gi|363716138|gb|EHL99554.1| RNA methyltransferase, TrmH family, group 3 [Lactobacillus
parafarraginis F0439]
Length = 257
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/275 (26%), Positives = 127/275 (46%), Gaps = 39/275 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+AAL + L++Q G+ KKD ++LK+A+ + + E
Sbjct: 11 EFIIGRHPVVAALKSDN-PLNKLFIQTGI--------KKDDNIVSEILKLAKKQRLVVSE 61
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K L+ + ++ HQG+VL + E + +L + D +V LD + DP NLG+
Sbjct: 62 VPKQKLDRLTHSQNHQGVVLSVAAFEYATLDDLFENAKRHDTDPFFVILDNIEDPHNLGS 121
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIR+A G +GV++ + L+ V+K S+G++E + + N+ + E G V
Sbjct: 122 IIRTADAAGVTGVIIPKHRAVGLTATVAKTSAGAIERVPVARVTNLSATIKELKERGVWV 181
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G +S + +V+G+EG G+ PL+++ ++ IP G+I
Sbjct: 182 FGTDIS--GTDYRQWNAKGAVAVVIGNEGKGISPLLKKQVDEMLTIP-------MVGDI- 231
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
+SLN SVAA +L++
Sbjct: 232 --------------------QSLNASVAASILIYQ 246
>gi|410863197|ref|YP_006978431.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
AltDE1]
gi|410820459|gb|AFV87076.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Alteromonas macleodii
AltDE1]
Length = 246
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/277 (28%), Positives = 129/277 (46%), Gaps = 40/277 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + + L + ++V +G ++ ++ A GIS++
Sbjct: 5 EWLYGLHAMQSVLEKEPERVMEVWVLKG----------RNDDRLTNIVNQARRFGISVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ + L+ V HQG+V A P ++ +LD I E Q L + LD +TDP NLGA
Sbjct: 55 SQRKALDDKVNGEQHQGVVAKAKPARVLDEADLDKILERESQ-PLILVLDGITDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G VV+ SA L+G V K + G+ E++ L N+ + L + G +
Sbjct: 114 CLRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLSRTLKHLQDKGLWI 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + + L ++ T LV+G+EG G+R L + +C LV++P AG
Sbjct: 174 VGTAGETDKT-LYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L+ +V
Sbjct: 223 ------------------SVTSLNVSVATGVCLYEIV 241
>gi|297572188|ref|YP_003697962.1| TrmH family RNA methyltransferase [Arcanobacterium haemolyticum DSM
20595]
gi|296932535|gb|ADH93343.1| RNA methyltransferase, TrmH family, group 3 [Arcanobacterium
haemolyticum DSM 20595]
Length = 327
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/234 (29%), Positives = 115/234 (49%), Gaps = 36/234 (15%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
VL+ A G + E ++ +L+ + + HQG+ L+ P E V ++EL + D + L
Sbjct: 114 VLRAATESGAELIEVTRFELDKMTDGQVHQGIALEIPPYEYVDVEELVALGHDHLEPGLI 173
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
VALD VTDP NLGA +RSA F A GV++ + SA ++ V K S+G+ + + N+
Sbjct: 174 VALDSVTDPHNLGAAMRSASAFRADGVLIPERRSAGVNATVWKVSAGAAARVPVARETNL 233
Query: 458 MQFLVSSAENGWRVL----GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
++ L G+ V+ GG + + + ++ P ++V GSEG GL LV +C
Sbjct: 234 VRALEDLKAQGYFVVGLDGGGDATVDTLDMADV----PLVIVTGSEGKGLSRLVRDTCDV 289
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ IP + +D +ESLN +VA G+ L+ +
Sbjct: 290 IASIP--------------IASD--------------MESLNAAVATGIALYQI 315
>gi|163791188|ref|ZP_02185605.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
gi|159873519|gb|EDP67606.1| tRNA/rRNA methyltransferase [Carnobacterium sp. AT7]
Length = 288
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 71/269 (26%), Positives = 129/269 (47%), Gaps = 41/269 (15%)
Query: 299 PVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
P + L ++ R+ +++QEGLS S E++ +A+ + I K L+
Sbjct: 54 PAIEVLKSE-RDINKIFLQEGLSGSK----------MEEIQNLAKKRSVQISFVPKSKLD 102
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V HQG+V+ AS + I +L ++A +++ ++ LD V DP NLG+I+R+A
Sbjct: 103 QLVDGMNHQGVVVAASAFQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADA 162
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
GA G+++ + + L+ V+KAS+G++E + + N++Q + E G + G +
Sbjct: 163 IGAHGIIIPKRRAVGLTATVAKASTGAIEHVAVARVTNLVQAIKELKERGLWLYGTDMEG 222
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
+ + P LV+G+EG G+ LV+ ++ IP
Sbjct: 223 Q--DYRQWETTLPIGLVMGNEGKGISRLVKEQMDGMITIPMT-----------------G 263
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
H V+SLN SVAA +L++ +
Sbjct: 264 H-----------VQSLNASVAASLLMYEV 281
>gi|149186804|ref|ZP_01865114.1| rRNA methylase [Erythrobacter sp. SD-21]
gi|148829471|gb|EDL47912.1| rRNA methylase [Erythrobacter sp. SD-21]
Length = 263
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 89/161 (55%), Gaps = 7/161 (4%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVL+ + LE + E+ D D A + LD+VTDP N+GAI+RSA
Sbjct: 84 LVAKDAPHQGLVLECAALEDRFLDEV----LDGDPARPIIVLDQVTDPHNVGAIMRSAVA 139
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVS 477
F A+ +V +++ P GV+ K++SG+LE + N+ + + AE G WR+ G
Sbjct: 140 FNAAALVTQDRHAPPEGGVIGKSASGALETLPWIRVVNLARAMEEMAEAGYWRI--GLTG 197
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
E P P +VLG+EG G+R +E C L ++P
Sbjct: 198 HTDTTFAEALPAGPVAIVLGAEGEGMRQNIETHCDALAKLP 238
>gi|89094562|ref|ZP_01167500.1| hypothetical protein MED92_00984 [Neptuniibacter caesariensis]
gi|89081161|gb|EAR60395.1| hypothetical protein MED92_00984 [Oceanospirillum sp. MED92]
Length = 245
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 126/281 (44%), Gaps = 41/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E L+G+ V AL + + + + +G ++D K ++++ A ++ I
Sbjct: 1 MQFEPLFGIHAVNTALKRDAQRIHKILIMKG---------RQDAK-MQRLIDTALDLRIR 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ SK +L +V HQG+V P++ + LD + ++ + LD VTDP N
Sbjct: 51 IEQVSKRELEELVKGAVHQGVVALCKPIQTYNEQYLDKLLDQLEEPPFLLILDGVTDPHN 110
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G VV SAPL+ +K + G+ E + N+ + L S E G
Sbjct: 111 LGACLRTADAAGVQAVVAPKDKSAPLNATAAKVACGAAESVPYVLVTNLARTLKSLQERG 170
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W G+ + + + P L++G+EG G+R L C LV+IP A
Sbjct: 171 VWTT--GTAGETDLDIYQANLKGPMALIMGAEGQGMRRLTREHCDQLVKIP-------MA 221
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
GE V SLNVSVA G+ L V
Sbjct: 222 GE---------------------VSSLNVSVATGICLFEAV 241
>gi|415703628|ref|ZP_11459379.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
284V]
gi|415706286|ref|ZP_11461360.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
0288E]
gi|415711139|ref|ZP_11463952.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
55152]
gi|388050934|gb|EIK73959.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
284V]
gi|388055178|gb|EIK78099.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
0288E]
gi|388058450|gb|EIK81240.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
55152]
Length = 329
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 91 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 149
Query: 386 PISADEDQAS--------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+ + +A L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 150 DRAEKKSRAMEAADSAAARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 209
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 210 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 269
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 270 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 301
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 302 ESLNASVAAGISLY 315
>gi|343508409|ref|ZP_08745752.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio ichthyoenteri
ATCC 700023]
gi|342793917|gb|EGU29701.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio ichthyoenteri
ATCC 700023]
Length = 246
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 129/281 (45%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E LYG+ V A L + F YV +G ++D + +L + G+S
Sbjct: 1 MSNEFLYGIHAVKAVLEREPERFIEAYVLKG---------RQDDR-LMPILNELQRCGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ + L+ HQG++ P + + +LD I A + +A L + LD VTDP N
Sbjct: 51 IQQMGRKTLDDKAQGANHQGVIARVKPAKQLNENDLDDIIA-QHEAPLLLVLDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SA ++ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAQMNATVSKVACGAAETVALVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA+G+ L V
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAV 240
>gi|307243416|ref|ZP_07525573.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
stomatis DSM 17678]
gi|306493226|gb|EFM65222.1| RNA methyltransferase, TrmH family, group 3 [Peptostreptococcus
stomatis DSM 17678]
Length = 244
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 119/240 (49%), Gaps = 31/240 (12%)
Query: 329 KKDKKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K K+G +K+L MA+ + I+E +H L+ + + HQG++ S + E+ I
Sbjct: 27 KASKEGSIKKILAMAKENKVIIQEVDRHKLDEMSESHAHQGVIAITSDYRYYDLDEILEI 86
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ + ++ LD +TDP NLG+IIR+A GA V++ + S ++ +V+KAS+G++E
Sbjct: 87 PKERGEDPFFIILDGITDPHNLGSIIRTADAVGAHAVIIPKRRSVQITPIVAKASAGAVE 146
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+ + N++ + + ENG + +V + G P LV+GSEG G+ LV
Sbjct: 147 YLPVCKVTNIVNTIKTLKENGLWI--AAVDMDGHTFYQQNLGGPLGLVVGSEGEGISRLV 204
Query: 508 ERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++C V +P GN V SLN SVA G+LL+ +
Sbjct: 205 KQNCDFTVSMP----------------MSGN------------VTSLNASVAGGILLYEV 236
>gi|411120571|ref|ZP_11392943.1| rRNA methylase, putative, group 3 [Oscillatoriales cyanobacterium
JSC-12]
gi|410709240|gb|EKQ66755.1| rRNA methylase, putative, group 3 [Oscillatoriales cyanobacterium
JSC-12]
Length = 346
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 140/305 (45%), Gaps = 47/305 (15%)
Query: 280 EAAPSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK 337
EA S VP+ E +YG PVL AL + R +++ +R + D + +
Sbjct: 66 EAPASDVPESQEDIELIYGRHPVLTALEGQ-RTLNRIWII--------SRLRYDPR-FHT 115
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQASL 396
+L A+ G I E L+ + HQG+ +P E ++ +L + A DQ L
Sbjct: 116 LLSEAKANGSVIDEVDPRRLDQLTNGANHQGIAAQVAPYEYSELSDLLEKAKAASDQPVL 175
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VA D +TDP NLGAIIR+A GA G+V+ + + ++ V+K ++G+LE + N
Sbjct: 176 IVA-DGITDPHNLGAIIRTAEAMGAQGLVIPQRRAVGITATVAKVAAGALESFSVARVVN 234
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ + L G+ + G S + PL + T LV+G+EG GL L++RSC HLV
Sbjct: 235 LSRALEELKAAGFWIY-GLASEASQPLQKTEFSGATALVVGAEGEGLSLLIQRSCDHLVT 293
Query: 517 I--PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
I G P SLN SVAAG+ ++ + + S
Sbjct: 294 ISLAGKTP------------------------------SLNASVAAGMAIYEIYRQRQSK 323
Query: 575 NSHIE 579
+++
Sbjct: 324 TFYLD 328
>gi|319649135|ref|ZP_08003343.1| YacO protein [Bacillus sp. BT1B_CT2]
gi|423680489|ref|ZP_17655328.1| tRNA/rRNA methyltransferase YacO [Bacillus licheniformis WX-02]
gi|317388835|gb|EFV69654.1| YacO protein [Bacillus sp. BT1B_CT2]
gi|383441595|gb|EID49304.1| tRNA/rRNA methyltransferase YacO [Bacillus licheniformis WX-02]
Length = 249
Score = 100 bits (249), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 40/259 (15%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
RE Y L++ E N K + ++V+ +A G++I + L+ +V + HQG
Sbjct: 22 RELYKLWMAE------NTVKGQA----QQVVDLAAKKGVTIHYVPRKKLDQMVSGQ-HQG 70
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+V + E ++ +L + D ++ + LDE+ DP NLG+I+R+A GA G+V+
Sbjct: 71 VVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGAHGIVIPK 130
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ + L+ V+KAS+G++E + + N+ + L G V+G S + +
Sbjct: 131 RRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDASGQQ-DYRSLDG 189
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P LV+GSEG G+ LV+ C L+R+P AG+
Sbjct: 190 NMPLALVIGSEGKGMGRLVKEKCDFLIRLP-------MAGK------------------- 223
Query: 549 MAVESLNVSVAAGVLLHHL 567
V SLN SVAAG+L++ +
Sbjct: 224 --VTSLNASVAAGLLMYEV 240
>gi|427414125|ref|ZP_18904315.1| RNA methyltransferase, TrmH family, group 3 [Veillonella ratti
ACS-216-V-Col6b]
gi|425714501|gb|EKU77504.1| RNA methyltransferase, TrmH family, group 3 [Veillonella ratti
ACS-216-V-Col6b]
Length = 242
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 34/235 (14%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA--DEDQ 393
++++ +A++ GI ++ L+ HQG+V A+P VK +L + A D+
Sbjct: 36 QEIIGLAKDKGIELRRVDDKQLSKYADGVVHQGVVALAAP---VKFADLGEVLAAWPADK 92
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
A L + LD + DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E + L
Sbjct: 93 APLLILLDGIEDPHNMGAIIRTAECCGATAVLIPKRHTAPINATVAKTSAGAVESIPLVQ 152
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTH 513
N+ Q + + G+ VLG + + L + P +LV+G+EG GL L + C
Sbjct: 153 VGNVAQTIEELKKQGFWVLGAHMEGQQT-LYQADLTSPLVLVIGNEGKGLSRLTKERCDF 211
Query: 514 LVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
LV IP + + SLN SVAA +L++ V
Sbjct: 212 LVTIP----------------------------MYGRLNSLNASVAAAILMYEAV 238
>gi|333980490|ref|YP_004518435.1| TrmH family RNA methyltransferase [Desulfotomaculum kuznetsovii DSM
6115]
gi|333823971|gb|AEG16634.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
kuznetsovii DSM 6115]
Length = 256
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/183 (33%), Positives = 100/183 (54%), Gaps = 3/183 (1%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+++L +A GI ++ + LN +V + PHQG+V A+ E V + ++ + ED
Sbjct: 42 QEILNLARERGIPVQYVDRSHLNGLVKDAPHQGVVAMAAAKEYVSVDDILAAAFPED--P 99
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
+ L+E+TDP NLGAI+R+A G GVV+ SA L+ V+KAS G++E + +
Sbjct: 100 FIILLNEITDPHNLGAILRTADAAGVHGVVVTRHRSAALTPAVAKASCGAVEYVRVARVP 159
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + + E G V+G +++ + + G P LV+G E GL LV C LV
Sbjct: 160 NLARTITYLQERGLWVVGACGTARDMYWDVRLDG-PIALVIGGEDKGLGRLVREKCDQLV 218
Query: 516 RIP 518
R+P
Sbjct: 219 RLP 221
>gi|319404391|emb|CBI77994.1| tRNA/rRNA metyltransferase [Bartonella rochalimae ATCC BAA-1498]
Length = 272
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 108/231 (46%), Gaps = 25/231 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ PV AAL R LY + N K+ D N+ I S
Sbjct: 42 LYGIHPVHAALKNPRRILRHLYT------TPNALKRLDIN--------ESNIACPITPCS 87
Query: 354 KHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
L M VG HQG+VL+ PL+ + EL L + +D++TDP N+GAI
Sbjct: 88 PKKLEMFVGREAVHQGIVLETEPLKSRSLSELT-------NTDLIIIMDQITDPHNVGAI 140
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA F A ++ ++S SGV++KA+SG+LEL+E N+ + L + +
Sbjct: 141 MRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVRNLFKALQELHQMNFISF 200
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
G K PL G L+LG+EG GLR + L R +PG+I
Sbjct: 201 GLDSEGK-FPLETALTGTKISLILGAEGKGLRQKTRENVYSLARLDLPGDI 250
>gi|299541908|ref|ZP_07052231.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
fusiformis ZC1]
gi|424739348|ref|ZP_18167767.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
fusiformis ZB2]
gi|298725646|gb|EFI66287.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
fusiformis ZC1]
gi|422946745|gb|EKU41151.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
fusiformis ZB2]
Length = 250
Score = 100 bits (248), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 123/229 (53%), Gaps = 15/229 (6%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE + G PVL AL + R+ +++ EG+ K G ++L +A G+ ++
Sbjct: 6 GEIIAGKNPVLEALRS-GRDMNKVWIAEGVK----------KSGVNELLDLARERGVIVQ 54
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K ++ + + HQG+V + + ++++L +A++ + ++ LDE+ DP NLG
Sbjct: 55 FVPKKKVDQL-SSANHQGIVASVAAYKYAELEDLFAAAANKQEDPFFLILDELEDPHNLG 113
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-W 469
+I+R+A GA G+++ + S L+ VV+KAS+G++E + + NN+ Q + E G W
Sbjct: 114 SIMRTADAIGAHGIIIPKRRSVSLTAVVAKASTGAIEHVPVVRVNNLAQTIDELKERGIW 173
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G+ + + ++ P +++GSEG G+ L++ C L +P
Sbjct: 174 --IAGTDAKGSADYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLP 220
>gi|32490927|ref|NP_871181.1| hypothetical protein WGLp178 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166133|dbj|BAC24324.1| yjfH [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 68/245 (27%), Positives = 127/245 (51%), Gaps = 21/245 (8%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG+ + + K+ + + L L S +KD K ++K++ ++ I I
Sbjct: 1 MNEIIYGIHVIEEFIKNKSNKILCI-----LFLKS----RKDIK-FKKLILISNEKNIKI 50
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI---SADEDQASLWVALDEVTDP 406
K K LN + N+ HQG+V +++K +P + + ++ LD + DP
Sbjct: 51 KFVDKKFLNKITNNKKHQGIVAYIKNSKILK----EPFLLKMLENKKNYFFLILDGIMDP 106
Query: 407 QNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAE 466
+NLG+ IRSAY FG V++ SA +S V K +SGSL+L+ L Y N+++ + +
Sbjct: 107 RNLGSCIRSAYIFGVQAVIIRKNRSAKISSAVKKVASGSLDLIPLIYVTNLVRTINLLKK 166
Query: 467 NGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP---GNIPV 523
+++G S ++ N+ Q +V+GSE G+ LV+ +C +++ IP N+P+
Sbjct: 167 YNIQIIGTSRKAQLDICNK-KLKQSIAVVMGSENLGISRLVKENCDNILNIPTVKNNLPL 225
Query: 524 DVTAG 528
+++
Sbjct: 226 NISVA 230
>gi|407715964|ref|YP_006837244.1| TrmH family RNA methyltransferase [Cycloclasticus sp. P1]
gi|407256300|gb|AFT66741.1| RNA methyltransferase, TrmH family, group 3 [Cycloclasticus sp. P1]
Length = 251
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 119/245 (48%), Gaps = 34/245 (13%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDAS-PLEMVKIKEL 384
+R++KD K + + + + +GI + K L + N HQG++L A P E + +
Sbjct: 30 DRQRKDAK-LQAIKQSLDEVGIRVDYVDKKTLEKLSSNANHQGVLLTAKLPQERTEEQLK 88
Query: 385 DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
+ +DQA ++ LD+VTDP NLGA +R+A G GV++ N+ L+ V K +SG
Sbjct: 89 KALKEQQDQA-FYLVLDQVTDPHNLGACLRTALAAGVQGVIVPKDNACRLNATVCKVASG 147
Query: 445 SLELMELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGL 503
+ EL+ + N+++ L E W + G+ + E +V+G+EG GL
Sbjct: 148 AAELLPVYRVTNLVRTLKYLKTEGVW--VSGAAGEATKDVFEAELTGSVAIVMGAEGKGL 205
Query: 504 RPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVL 563
R L ++ C L++IP + VESLNVSVA G++
Sbjct: 206 RSLTQQQCDQLIKIPMS----------------------------EKVESLNVSVATGII 237
Query: 564 LHHLV 568
L+ ++
Sbjct: 238 LYEVL 242
>gi|153840466|ref|ZP_01993133.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AQ3810]
gi|417320828|ref|ZP_12107369.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
parahaemolyticus 10329]
gi|433658907|ref|YP_007276286.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
parahaemolyticus BB22OP]
gi|149745870|gb|EDM57000.1| RNA methyltransferase, TrmH family, group 3 [Vibrio
parahaemolyticus AQ3810]
gi|328472293|gb|EGF43163.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio
parahaemolyticus 10329]
gi|432509595|gb|AGB11112.1| 23S rRNA (guanosine-2'-O-) -methyltransferase rlmB [Vibrio
parahaemolyticus BB22OP]
Length = 247
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/286 (27%), Positives = 134/286 (46%), Gaps = 42/286 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L + F YV +G ++D + +L + G+S
Sbjct: 1 MSNEFIYGIHAVKAVLEREPERFIEAYVLKG---------RQDDR-LMPILNDLQVCGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ ++ L+ HQG++ P + + ++D I A + + L + LD VTDP N
Sbjct: 51 IQQMTRKTLDDKAHGANHQGIIARVKPAKQLNENDIDDILA-QHETPLLLVLDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + +++ SAP++ VSK + G+ E++ L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 IWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
G +V SLNVSVA+G+ L V +++
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAVRQRLA 245
>gi|405381844|ref|ZP_11035667.1| rRNA methylase, putative, group 3 [Rhizobium sp. CF142]
gi|397321731|gb|EJJ26146.1| rRNA methylase, putative, group 3 [Rhizobium sp. CF142]
Length = 296
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 137/288 (47%), Gaps = 31/288 (10%)
Query: 237 EAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYG 296
++ D+ + R + R + R E P R+ G WK P+ P V LYG
Sbjct: 15 KSAKDTHYATLRRAHRDGKRERGEIPTPAPQKRKR--GGDDWK--PPALAPDQVL--LYG 68
Query: 297 VGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHD 356
+ V AAL R+ L V + ++ R + D + +GI ++ S D
Sbjct: 69 LHTVRAALENPERKNIKLSVTQ----NALARLEID----------PDTIGIPVEMVSPQD 114
Query: 357 LNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
++ V+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RS
Sbjct: 115 IDKVLGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRS 167
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A F A V+ ++S SGV++K++SG+LEL+ N+ L + G+ +G
Sbjct: 168 AVAFNAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLSDALGELHKLGFFTIGLD 227
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S PL G LVLGSEG GLR + + L R+ PG I
Sbjct: 228 -SEGPAPLEGTFSGGRIALVLGSEGKGLRQKTRETVSALARLDMPGAI 274
>gi|398353227|ref|YP_006398691.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Sinorhizobium fredii
USDA 257]
gi|390128553|gb|AFL51934.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Sinorhizobium
fredii USDA 257]
Length = 343
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 89/305 (29%), Positives = 148/305 (48%), Gaps = 36/305 (11%)
Query: 222 YAKNQGTAEEEGEEMEAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEA 281
Y K + + ++ G++ + DS + R + R + R E P + R++ WK
Sbjct: 48 YYKVRMSKDKTGDK--SAKDSHYATLRRAHRDARRERGEIPTPRPDKRRKLP--VDWK-- 101
Query: 282 APSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKM 341
+P+ P V LYG+ V AAL R L V + + L++
Sbjct: 102 SPALAPDEVL--LYGLHTVRAALDNPERTIIRLSVTQNAATR---------------LEL 144
Query: 342 AE--NMGISIKETSKHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWV 398
E + ++ + DL+ V+G + HQG++L+ PL K++ L + L +
Sbjct: 145 GELSALPFPVETVTPQDLDRVLGPDAIHQGVMLETRPLPHRKLEALS-------ECPLIL 197
Query: 399 ALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMM 458
LD+VTDP N+GAI+RSA F A ++ ++S SGV++K++SG+LEL+ N+
Sbjct: 198 LLDQVTDPHNVGAIMRSAVAFEAGALITTMRHSPTESGVLAKSASGALELIPYIQITNLA 257
Query: 459 QFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI- 517
+ + + G++ +G S PL + G+ LVLGSEG GLR ++ T L R+
Sbjct: 258 DTIDALHKLGFQTIGLD-SEGPQPLEDTFSGEKIALVLGSEGKGLRQKTRQTVTALARLE 316
Query: 518 -PGNI 521
PG I
Sbjct: 317 MPGAI 321
>gi|381190692|ref|ZP_09898209.1| RNA methyltransferase [Thermus sp. RL]
gi|384430294|ref|YP_005639654.1| TrmH family RNA methyltransferase [Thermus thermophilus
SG0.5JP17-16]
gi|333965762|gb|AEG32527.1| RNA methyltransferase, TrmH family, group 3 [Thermus thermophilus
SG0.5JP17-16]
gi|380451401|gb|EIA39008.1| RNA methyltransferase [Thermus sp. RL]
Length = 238
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 112/226 (49%), Gaps = 19/226 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK-VLKMAENMGISIKET 352
+YG PVL AL A R+ +G E +LK E +G +
Sbjct: 3 IYGRNPVLEALRA-----------------GRARRVLVARGVEGWLLKELEKLGAAYTLV 45
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ +L+ ++ HQG+ + +++ ++A + L VALD VTDP+N GA+
Sbjct: 46 PRIELDTLLRTTHHQGIAAEVEDPPYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAM 105
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSA GA GV+ + +APLS + KAS+G+ + + N+ + L + E G V
Sbjct: 106 IRSALALGAHGVLSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVY 165
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G V + P E+ +P +LV+GSEG G+R LV +C L RIP
Sbjct: 166 GLDVRGEKAPW-ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIP 210
>gi|319783294|ref|YP_004142770.1| TrmH family RNA methyltransferase [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169182|gb|ADV12720.1| RNA methyltransferase, TrmH family, group 3 [Mesorhizobium ciceri
biovar biserrulae WSM1271]
Length = 282
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 84/272 (30%), Positives = 135/272 (49%), Gaps = 32/272 (11%)
Query: 259 TEKPEYQRWNRQENSGRT-TWKEAAPSTVPKMVGEGL---YGVGPVLAALSAKTREFYAL 314
T + +R R E SG ++ P + +GL YG+ V AAL R+ +
Sbjct: 11 THYAKLRRAYRDEKSGGAPAFRPRQPVPPGENAADGLVRLYGLHTVRAALDNPRRKIRKM 70
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE--TSKHDLNMVVG-NRPHQGLVL 371
V + N ++ L++A+ + K D++ + G + HQG+++
Sbjct: 71 LV-------TRNAAER--------LEIADLAALPFKTELVEPRDIDKITGSDAVHQGVLI 115
Query: 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+A PL K K LD + A L + LD++TDP N+GAI+RSA FGA ++ A++S
Sbjct: 116 EAEPL---KAKRLDALG----DAKLVLVLDQITDPHNVGAILRSAVAFGAGALITTARHS 168
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
SGV++K++SG+LE ++ N+ + L E G+R +G + A L + G+
Sbjct: 169 PQESGVLAKSASGALEHIDQIEVKNLAEALGQLHEAGFRTMGLDSDAPA-ELEKSFAGEK 227
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 228 IALVLGAEGKGLRQKTRETVTTLARLDMPGAI 259
>gi|410694284|ref|YP_003624906.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Thiomonas sp. 3As]
gi|294340709|emb|CAZ89101.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
2'-O-methyltransferase) [Thiomonas sp. 3As]
Length = 242
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 128/278 (46%), Gaps = 47/278 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V A L A +A+YV + ++D + ++ L+ E G+ +K S
Sbjct: 4 LYGFHAVGARLRAAPASVHAVYV---------DASRRDAR-MQQFLRKVEASGVELKTLS 53
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L + G HQG+V L V +L + + A L +ALD VTDP NLGAI+
Sbjct: 54 AERLTALAGTDRHQGVVAQVDDLPTVH--DLHAVLDAVEGAPLVLALDGVTDPHNLGAIL 111
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G V+ + L+ V++ +SG+ E + N+++ L + G V+G
Sbjct: 112 RTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMG 171
Query: 474 GSVSSKAVPLNEIPPG---QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
++ +++ QP +LV+G+EG G+R LV +C L++IP
Sbjct: 172 TDEAAT----DDVYAANWTQPAVLVMGAEGAGMRRLVRETCDQLLQIP------------ 215
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AVESLNVSVAAGV L+ V
Sbjct: 216 ----------------MLGAVESLNVSVAAGVCLYEAV 237
>gi|449131211|ref|ZP_21767427.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
SP37]
gi|448940044|gb|EMB20955.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
SP37]
Length = 258
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 116/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + +++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKVEKQDNQFLDSITKTLPEQLRDHRGIVLVTETENQKKGMSVDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E ++ V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKGSAFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++G+EG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPNLTFP--KKTVLIMGNEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|406574864|ref|ZP_11050580.1| TrmH family RNA methyltransferase [Janibacter hoylei PVAS-1]
gi|404555669|gb|EKA61155.1| TrmH family RNA methyltransferase [Janibacter hoylei PVAS-1]
Length = 327
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 114/248 (45%), Gaps = 43/248 (17%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR D + + L +A GI I ET + +L+ + HQGL P E K+L
Sbjct: 98 NRIDSDDR-VREALTIAAEAGIPIMETPRSELDRLTDGAVHQGLAAQVPPYEYAHPKDL- 155
Query: 386 PISADED--QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASS 443
AD L VALD +TDP+NLGAI+RS FG GVV+ ++ SA ++ K S+
Sbjct: 156 ---ADSQLPGVPLVVALDGITDPRNLGAIVRSVGAFGGHGVVVPSRRSAGMTAAAWKTSA 212
Query: 444 GSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSE 499
G+ + + +N+++ L G+ V+G G V + L P ++V+GSE
Sbjct: 213 GAAARVPVAQASNLVRALEDYRSAGFFVIGLDMEGDVELPGLELAT----SPLVVVVGSE 268
Query: 500 GTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVA 559
G GL LV +C +V IP + + ESLN +A
Sbjct: 269 GKGLSRLVRETCDQIVSIPMS----------------------------SSAESLNAGIA 300
Query: 560 AGVLLHHL 567
AGV L+ +
Sbjct: 301 AGVTLYEV 308
>gi|294791945|ref|ZP_06757093.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
6_1_27]
gi|294457175|gb|EFG25537.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp.
6_1_27]
Length = 243
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 123/246 (50%), Gaps = 45/246 (18%)
Query: 330 KDKKGYEKVLKMAENMGIS-----IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
K K G ++ +A++ GI IK+ +K+DL + PHQG++ S ++ ++ E+
Sbjct: 30 KVKTGLADIVGLAKSQGIEVRPTPIKQMNKYDLEV-----PHQGVIALVSAVQFKELGEV 84
Query: 385 DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
+ + L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G
Sbjct: 85 --LQETTHEVPLLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVAKTSAG 142
Query: 445 SLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLR 504
++E + L N+ Q + + G+ V+G + L E PT++V+G+EG G+
Sbjct: 143 AIEQIPLVQVGNVAQTIKQLQKQGFWVMGAHMEGDRT-LYEADMTIPTVIVIGNEGKGIS 201
Query: 505 PLVERSCTHLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
+V+ +C LV IP GN+ SLN SVAA V
Sbjct: 202 RVVKEACDFLVTIPMYGNL------------------------------NSLNASVAAAV 231
Query: 563 LLHHLV 568
L++ V
Sbjct: 232 LMYEAV 237
>gi|169830056|ref|YP_001700214.1| trmH family tRNA/rRNA methyltransferase yacO [Lysinibacillus
sphaericus C3-41]
gi|168994544|gb|ACA42084.1| Putative trmH family tRNA/rRNA methyltransferase yacO
[Lysinibacillus sphaericus C3-41]
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 123/229 (53%), Gaps = 15/229 (6%)
Query: 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK 350
GE + G PVL AL + R+ +++ EG+ K G ++L +A G+ ++
Sbjct: 6 GEIIAGKNPVLEALRS-GRDMNKVWIAEGVK----------KSGVNELLDLARERGVIVQ 54
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K ++ + + HQG+V + + ++++L +A + + ++ LDE+ DP NLG
Sbjct: 55 FVPKKKVDQL-SSANHQGIVASVAAYKYAELEDLFAAAAKKQEDPFFLILDELEDPHNLG 113
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-W 469
+I+R+A GA G+++ + S L+ VV+K+S+G++E + + NN+ Q + E G W
Sbjct: 114 SIMRTADAIGAHGIIIPKRRSVSLTAVVAKSSTGAIEHVPVVRVNNLAQTVDELKERGIW 173
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G+ + +V ++ P +++GSEG G+ L++ C L +P
Sbjct: 174 --IAGTDAKGSVDYRKMDATLPLAIIIGSEGKGMGRLLKEKCDFLYHLP 220
>gi|291455637|ref|ZP_06595027.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
DSM 20213 = JCM 1192]
gi|384197973|ref|YP_005583717.1| TrmH family RNA methyltransferase [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|417942986|ref|ZP_12586243.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
CECT 7263]
gi|291382565|gb|EFE90083.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
DSM 20213 = JCM 1192]
gi|333110899|gb|AEF27915.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|339480076|gb|ABE96544.1| SpoU rRNA methylase family protein [Bifidobacterium breve UCC2003]
gi|376166141|gb|EHS85061.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium breve
CECT 7263]
Length = 332
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 117/243 (48%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+++K+A G+ + E + +++ + + HQG++L P + ++EL + + +A
Sbjct: 104 EIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLRELADRAEKKAKAME 163
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 164 AANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVS 223
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + + E G+ V+G + P ++VLGSEG+G
Sbjct: 224 AGAAAHMPVARVVNLTKAIEGLKERGYYVVGLDGGGDKLVGETGFETDPLVVVLGSEGSG 283
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV SC + IP + +VESLN SVAAG+
Sbjct: 284 LSRLVRESCDAIAGIPIS----------------------------SSVESLNASVAAGI 315
Query: 563 LLH 565
L+
Sbjct: 316 SLY 318
>gi|209696173|ref|YP_002264103.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Aliivibrio
salmonicida LFI1238]
gi|208010126|emb|CAQ80451.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Aliivibrio
salmonicida LFI1238]
Length = 247
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 134/281 (47%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E L+G+ A L F ++V +G ++D + + ++ E +G
Sbjct: 1 MSNEFLFGIHATKAVLERDPARFIEIFVLKG---------REDDRLLPIITELGE-LGFK 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E + L+ HQG++ +P + + ++LD I D+ + L++ LD VTDP N
Sbjct: 51 IQELPRKTLDDKAKGANHQGIIARVTPAKQLNERDLDDI-MDKTENPLFLVLDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SA ++ VSK + G+ E++ L N+ + + + E G
Sbjct: 110 LGACLRNADGAGVAAVIVPKDKSASMTATVSKVACGAAEMVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V ++K V +++ P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFVGTAGEATKDVFQSKLT--GPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA+GV L V
Sbjct: 221 G---------------------SVTSLNVSVASGVCLFEAV 240
>gi|395531980|ref|XP_003768051.1| PREDICTED: rRNA methyltransferase 1, mitochondrial [Sarcophilus
harrisii]
Length = 354
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 102/200 (51%), Gaps = 36/200 (18%)
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
LW+ L+E+ DP+NLGA++R+A+F G V+ NS PL+ VVSKAS+G +E+M++ +
Sbjct: 143 LWLVLEEIQDPRNLGAVLRTAHFLGVDKVITSHTNSCPLTPVVSKASAGVMEVMDVFATD 202
Query: 456 NMMQFLVSSAENGWRVLG-------GSVSSKAVPL---NEIPPGQPTILVLGSEGTGLRP 505
++ L + GW V G G V VP+ E + T+LVLG+EG GL
Sbjct: 203 DLPGLLKDKTQQGWLVAGTVGCPGSGIVQGSNVPITSCQEFLWDRSTLLVLGNEGFGLSH 262
Query: 506 LVERSCTHLVRI-PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
V C L+ I PG + VESLNVSVAAG+LL
Sbjct: 263 EVRNLCHILLTIQPGR-------------------------ELIPEVESLNVSVAAGILL 297
Query: 565 HHLVGHQVSNNSHIEDSSTA 584
+ ++ + + ++ ++A
Sbjct: 298 YSIISQRKGHGDWLQKETSA 317
>gi|319405864|emb|CBI79496.1| tRNA/rRNA metyltransferase [Bartonella sp. AR 15-3]
Length = 276
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/232 (33%), Positives = 114/232 (49%), Gaps = 27/232 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
LYG+ PV AAL R LY + N K+ L + E N+ SI
Sbjct: 46 LYGIHPVHAALKNPRRILRHLYA------TPNALKR---------LNINESNIPCSITSC 90
Query: 353 SKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S L VG+ HQG+VL+ PL+ + EL +L + +D++TDP N+GA
Sbjct: 91 SPKKLETFVGSEAVHQGIVLETEPLKSHSLSELT-------NTNLIIVMDQITDPHNVGA 143
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA F A ++ ++S SGV++KA+SG+LEL+E +N+ + L + +
Sbjct: 144 IMRSAVAFKAGAIITTNRHSPQESGVLAKAASGALELIEYITVHNLSKALKELQQMNFIS 203
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR--IPGNI 521
G S PL G L+LG+EG GLR + LVR +PG+I
Sbjct: 204 FGLD-SEGGFPLETALTGNKISLILGAEGKGLRQKTRENVYSLVRLDLPGDI 254
>gi|297200590|ref|ZP_06917987.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
gi|197709715|gb|EDY53749.1| tRNA/rRNA methyltransferase [Streptomyces sviceus ATCC 29083]
Length = 313
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 148/321 (46%), Gaps = 44/321 (13%)
Query: 252 RRDVKARTEKP--EYQRWNRQENSGRTTWKEAAPSTVPKMVG-----EGLYGVGPVLAAL 304
RR ++ + P E ++ +++ K+A P+ G E + G PV+ AL
Sbjct: 23 RRGLEGKGPTPPAEMRKGHKKNRIANAKSKQAVRRPAPRGRGGKGTSEMVVGRNPVVEAL 82
Query: 305 SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
LYVQ+ + D++ E + +AE G+ + E + +L+ +
Sbjct: 83 REGV-PAVTLYVQQFID--------NDERVREALQLVAERGGVHLMEAPRPELDRMTNGL 133
Query: 365 PHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGV 424
HQGLVL P E ++L + D+ L VALD VTDP+NLGA++RS FG GV
Sbjct: 134 NHQGLVLQVPPYEYAHAEDLAAAAYDDGADPLIVALDGVTDPRNLGAVVRSVSAFGGHGV 193
Query: 425 VLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN 484
++ + +A ++ K S+G+ + C N+ + L + + G V+G + + +
Sbjct: 194 LVPERRAAGMTAGAWKTSAGTAARTPVARCTNLTRALEAYRKQGIVVVGLAADGEHEIGD 253
Query: 485 EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQ 544
G P +V+GSEG GL LV +C + VRIP +P G A
Sbjct: 254 LEALGGPVAIVVGSEGKGLSRLVGETCDYRVRIP--MP-----------------GGA-- 292
Query: 545 FQSFMAVESLNVSVAAGVLLH 565
ESLN VAAG++L+
Sbjct: 293 -------ESLNAGVAAGIVLY 306
>gi|144900864|emb|CAM77728.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Magnetospirillum
gryphiswaldense MSR-1]
Length = 314
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/279 (31%), Positives = 131/279 (46%), Gaps = 40/279 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQ-EGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
LYG VLAAL+ K R+ + + E L + ++ + G E
Sbjct: 66 LYGAHAVLAALANKARKIRRIVLTVEAL--------RSHAASIQRARALRPLPGEETTER 117
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ D + G HQG+ + A LE I+++ ++ + D A + V LD+VTDP N+GAI
Sbjct: 118 QELDRLLPPGA-VHQGIAVLAEHLESPGIEDIGRLAQNRDHAVVMV-LDQVTDPHNVGAI 175
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA FGA VV+ ++S +G ++K++SG+LE+M L NM++ L E G+
Sbjct: 176 LRSAAAFGALAVVVTDRHSPEETGTLAKSASGALEVMPLVRVTNMVRALEQLKEAGFWT- 234
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G L + LV+G+EG GLR L C HLV++P + D
Sbjct: 235 AGLAGEATQTLAQAKLSGKIALVMGAEGEGLRRLTREHCDHLVKLP-----------MSD 283
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
+ VESLNVS AA + L+ L Q
Sbjct: 284 L-----------------VESLNVSNAAAISLYELARDQ 305
>gi|85708105|ref|ZP_01039171.1| rRNA methylase [Erythrobacter sp. NAP1]
gi|85689639|gb|EAQ29642.1| rRNA methylase [Erythrobacter sp. NAP1]
Length = 265
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 118/236 (50%), Gaps = 41/236 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYV-QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
L+G PV AAL R+ L+ +EG+ Y +V +A
Sbjct: 33 LWGRHPVEAALKNPARQHRKLWATREGIDSLDGELPPDFAVEYAEVTDLA---------- 82
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+V + PHQGLVL+ PLE V + ++ A+ D A V LD+VTDP N+GAI
Sbjct: 83 -----RLVAKDAPHQGLVLECEPLEDVFLDDV----ANGDPARPVVVLDQVTDPHNVGAI 133
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV 471
+RSA FGA+ +V +++ P GV++K++SG+LE + N+ + L A+ G WR+
Sbjct: 134 LRSAAAFGAACIVTQDRHAPPEGGVLAKSASGALETVPWVRVVNLARALDELADLGYWRI 193
Query: 472 ---------LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
L GS+++ A+ LVLG+EG G+R + + C L ++P
Sbjct: 194 GLAGEAEATLSGSLTTGAL-----------ALVLGAEGEGMRHNIAQHCDTLAKLP 238
>gi|453086252|gb|EMF14294.1| alpha/beta knot [Mycosphaerella populorum SO2202]
Length = 412
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 97/334 (29%), Positives = 144/334 (43%), Gaps = 68/334 (20%)
Query: 283 PSTVPKMVG--EGLYGVGPVLAALSAKTREFYALYVQEGL--SLSSNNRKKKDKKGYEKV 338
P ++P E +YG V+AAL A+ R+ Y LY+ + + +K ++
Sbjct: 75 PVSIPYTTAASEFIYGYNSVIAALKARRRKLYKLYIHRKIFEEVVGAQGTTSGEKPVNEL 134
Query: 339 LKMAENMGISIKETSKHD-LNMVVGNRPHQGLVLDASPLEMVKIK--------------E 383
+ +A+ GI SK L+ + RPH G++L+AS L V + E
Sbjct: 135 MALAKEAGIPFHNESKTAMLDKMSDGRPHNGVILEASKLPTVPVLGLRKPEITKGYIPLE 194
Query: 384 LDPISADEDQAS----------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLC 427
L P SA++ + + V LD +TDP N+G IIR+ + +G V +
Sbjct: 195 LAPQSAEDAKINGSPQVINSLTGSWRYPFVVLLDGITDPGNVGNIIRTCHVYGVDAVAVA 254
Query: 428 AKNSAPL-SGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG-----GSVSSKAV 481
A L S V++KASSG+ E M L F+ S++ W+V G S
Sbjct: 255 TNTCANLSSAVLAKASSGACEAMRLLSLPQPSNFVHDSSKYRWKVYAAVAPTGKPDSAGQ 314
Query: 482 PLN------EIPPGQ-PTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVD 534
LN + P + P IL+LG+EG GLR + H V I G A + DV
Sbjct: 315 FLNTSKLAADSPLAKHPCILMLGAEGEGLRQNLRNRADHFVSIEGG----PKAESVPDV- 369
Query: 535 ADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+S+NVSVA GVLL +
Sbjct: 370 ---------------GVDSMNVSVATGVLLEAFL 388
>gi|398870931|ref|ZP_10626251.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM74]
gi|398207560|gb|EJM94309.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM74]
Length = 254
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 127/273 (46%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG ++ + ++++A + + +
Sbjct: 5 EKIYGVHAVEALLRHHPKRVKQIWLAEG----------RNDPRVQTLIELANENRVQVGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +++ V HQG+V D SP ++ LD + D A L + LD VTDP NLGA
Sbjct: 55 AERREMDAWVEG-VHQGVVADVSPSQVWGEAMLDELLDRTDGAPLLLVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 114 CLRSADAAGALAVIVPKDKSATLTPVVRKIACGAAEVIPLVAVTNLARTLEKLQQRGLWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+ G+ V L + PTIL++G+EG G+R L C +LV +P AG
Sbjct: 174 V-GTAGEAEVSLYDQDLTGPTILIMGAEGKGMRRLTREHCDYLVNLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 223 ------------------SVSSLNVSVATGVCL 237
>gi|336319526|ref|YP_004599494.1| RNA methyltransferase, TrmH family, group 3 [[Cellvibrio] gilvus
ATCC 13127]
gi|336103107|gb|AEI10926.1| RNA methyltransferase, TrmH family, group 3 [[Cellvibrio] gilvus
ATCC 13127]
Length = 324
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 70/236 (29%), Positives = 115/236 (48%), Gaps = 30/236 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++ +A + G + E ++ +L+ + HQG+ + P + +EL ++ A L
Sbjct: 117 EIISIAADAGYPLLEVTRTELDRLTDGSVHQGVAIQVPPYQYADDEELLDLAEASATAPL 176
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD VTDP+NLGA++RSA FG G+++ + SA ++ K S+G+ + + N
Sbjct: 177 VVALDGVTDPRNLGAVLRSAGAFGVHGLMVPERRSAGVTAAAWKVSAGAAARVPVARVTN 236
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLV 515
+ + L + G V+G VP+ ++P P ++V+GSEG GL LV C +
Sbjct: 237 LARTLQEWKKAGVFVVGLD-GGGDVPIGDLPFAADPLVIVVGSEGKGLSRLVREQCDAIA 295
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571
IP GSA VESLN VAAG+ L+ + H+
Sbjct: 296 SIP--------------------IGSA--------VESLNAGVAAGIALYEVARHR 323
>gi|153820492|ref|ZP_01973159.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
gi|126508965|gb|EAZ71559.1| RNA methyltransferase, TrmH family [Vibrio cholerae NCTC 8457]
Length = 229
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 124/269 (46%), Gaps = 42/269 (15%)
Query: 307 KTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPH 366
++R F YV +G ++D + VL +G+SI+E S+ L+ H
Sbjct: 1 RSRAFVEAYVLKG---------RQDDR-LLPVLNELMRLGVSIQEMSRKALDDKAEGANH 50
Query: 367 QGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVL 426
QGL+ P + +LD I A +Q L V LD VTDP NLGA +R+A G + V++
Sbjct: 51 QGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHNLGACLRNADAAGVAAVIV 109
Query: 427 CAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNE 485
SAPL+ VSK + G+ E + L N+ + + + E G W V G+ + +
Sbjct: 110 PKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKGVWFV--GTAGEATHDIYQ 167
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQF 545
+V+G+EG G+R L +C L++IP AG
Sbjct: 168 SKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MAG----------------- 203
Query: 546 QSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
+V SLNVSVA GV L V +++N
Sbjct: 204 ----SVSSLNVSVACGVCLFEAVRQRMAN 228
>gi|402813947|ref|ZP_10863541.1| putative TrmH family tRNA/rRNA methyltransferase YacO
[Paenibacillus alvei DSM 29]
gi|402507794|gb|EJW18315.1| putative TrmH family tRNA/rRNA methyltransferase YacO
[Paenibacillus alvei DSM 29]
Length = 246
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/231 (28%), Positives = 113/231 (48%), Gaps = 28/231 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ A+ G+ I+ K L+ +V HQG+V + V++ ++ + + +
Sbjct: 39 IIAEAKKAGVVIQTVDKRKLDQMVEGVQHQGVVAQVAAYHYVEVDDILAQAEAKGEIPFL 98
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ LDE+ DP NLG+I+R+A GA GVV+ + SA L+ VSK S+G++E + + N+
Sbjct: 99 ILLDEIEDPHNLGSILRTADCTGAHGVVIPKRRSAGLTATVSKTSAGAVEYVPVAKVTNL 158
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+Q + E G ++G VS+ P LV+G+E G+ LV +C L ++
Sbjct: 159 VQTMQQLKERGVWIVGTDVSATQDIYEADVFNLPIALVIGNENKGMGRLVRENCDMLYKL 218
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
P AG+I+ SLN SVAAG+ ++ +V
Sbjct: 219 P-------MAGQIN---------------------SLNASVAAGIFMYEVV 241
>gi|399057820|ref|ZP_10744249.1| rRNA methylase [Novosphingobium sp. AP12]
gi|398041568|gb|EJL34624.1| rRNA methylase [Novosphingobium sp. AP12]
Length = 276
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/161 (36%), Positives = 91/161 (56%), Gaps = 7/161 (4%)
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V + PHQGLVL+ PLE + + ++ D D + LD+VTDP N+GAI+RSA
Sbjct: 95 LVARDAPHQGLVLECDPLEDMFLADV----LDNDPLRPVIVLDQVTDPHNVGAIMRSAAA 150
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGSVS 477
F A +V +++ SG ++K++SG+LE++ N+ + L AE G WR+ G
Sbjct: 151 FNACAIVTQDRHAPVESGTLAKSASGALEVLPWVRVVNLARALEEIAEAGYWRI--GLTG 208
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ L E P P LVLG+EG G+R + + C L ++P
Sbjct: 209 TAETTLGEALPTGPVALVLGAEGDGMRHNITQHCDALAKLP 249
>gi|365882435|ref|ZP_09421666.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS 375]
gi|365289235|emb|CCD94197.1| putative rRNA methylase; 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS 375]
Length = 293
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 90/285 (31%), Positives = 133/285 (46%), Gaps = 49/285 (17%)
Query: 247 RRNSFRRDVKARTEKPE----YQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLA 302
R+ FRR T KP Q W R+ +SG S P + LYG V
Sbjct: 23 RKPPFRRQGGKFTGKPRGFDRPQAW-RERDSG---------SDGPVI----LYGWHTVTL 68
Query: 303 ALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVG 362
AL+ R LY+ E + R+ D++ +V I S+ D +
Sbjct: 69 ALANPKRRIRKLYLTENAA-----RRLADERIETRVTP-------EILRPSQID-QRLGP 115
Query: 363 NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGAS 422
+ HQGL+ +A PL I L P + + LD++TDP N+GAI+RSA F
Sbjct: 116 DAVHQGLLAEADPLPSPDIDTLSP-------EGMILVLDQITDPHNVGAILRSAAAFDVK 168
Query: 423 GVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSS 478
+V A++S +GV++K++SG+LEL+ + N+ + L E G++ +G G
Sbjct: 169 AIVTTARHSPEATGVLAKSASGALELVPIITVQNLARALTRLNERGFQTVGLDSAGDTDI 228
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
AV L QP LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 229 AAVALR-----QPLALVLGAEGKGLRQLTRETCSVVARLDMPGAI 268
>gi|52783308|sp|Q83CW6.1|RLMB_COXBU RecName: Full=23S rRNA (guanosine-2'-O-)-methyltransferase RlmB;
AltName: Full=23S rRNA (guanosine2251
2'-O)-methyltransferase; AltName: Full=23S rRNA Gm2251
2'-O-methyltransferase
Length = 250
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V L A + LYVQE +D + + +++ A+ +G+ + S
Sbjct: 7 IYGIHAVSGVLDAAPQRIVKLYVQE----------NRDDQRLQSLVEKAKALGVKVILLS 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +
Sbjct: 57 RTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G
Sbjct: 116 RSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 176 TAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP--------------- 219
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GS VESLNVSVA G+ L+ +
Sbjct: 220 ----LRGS---------VESLNVSVACGICLYEV 240
>gi|415704568|ref|ZP_11459839.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
75712]
gi|388051290|gb|EIK74314.1| RNA methyltransferase, TrmH family, group 3 [Gardnerella vaginalis
75712]
Length = 379
Score = 100 bits (248), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 43/254 (16%)
Query: 326 NRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELD 385
NR + D + E ++K+A G+ + E + +++ + + HQG++L P + ++EL
Sbjct: 141 NRIEHDDRTRE-IVKLAGMQGLRLLEADRLEMDRIAHSTNHQGIILKVQPYQYYSLQELV 199
Query: 386 PISADEDQAS--------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNS 431
+ + +A L++ALD VTDPQNLGA+IRSA FGA+GV+L + S
Sbjct: 200 DRAEKKSRAMEAADSAAARINARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRS 259
Query: 432 APLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQP 491
A ++ K S+G+ + + N+ + + E GW +G + P
Sbjct: 260 ASVTAAAWKVSAGAAAHLPVARVVNLNKAIQGLRERGWYAIGLDGGGDKLVGETGFETDP 319
Query: 492 TILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551
++VLGSEG G+ L +C + IP + AV
Sbjct: 320 LVVVLGSEGKGMSRLTREACDAIAGIPIS----------------------------SAV 351
Query: 552 ESLNVSVAAGVLLH 565
ESLN SVAAG+ L+
Sbjct: 352 ESLNASVAAGISLY 365
>gi|328958759|ref|YP_004376145.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
gi|328675083|gb|AEB31129.1| 23S rRNA methyltransferase [Carnobacterium sp. 17-4]
Length = 285
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/269 (26%), Positives = 129/269 (47%), Gaps = 41/269 (15%)
Query: 299 PVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
P + L ++ R+ +++QEGLS S E++ +A+ + I K L+
Sbjct: 51 PAIEVLKSE-RDINKIFLQEGLSGSK----------MEEIQNLAKKRSVQISFVPKSKLD 99
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+V HQG+V+ AS + I +L ++A +++ ++ LD V DP NLG+I+R+A
Sbjct: 100 QLVDGMNHQGVVVAASAFQYATIDDLFAVAAQKNEDPFFILLDGVEDPHNLGSIMRTADA 159
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
GA G+++ + + L+ V+KAS+G++E + + N++Q + E G + G +
Sbjct: 160 IGAHGIIIPKRRAVGLTATVAKASTGAIEHVPVARVTNLVQAIKELKERGLWLYGTDMEG 219
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
+ + P LV+G+EG G+ LV+ +V IP
Sbjct: 220 Q--DYRQWETTLPIGLVMGNEGKGISRLVKEQMDGMVTIPMT-----------------G 260
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
H V+SLN SVAA +L++ +
Sbjct: 261 H-----------VQSLNASVAASLLMYEV 278
>gi|451947731|ref|YP_007468326.1| rRNA methylase, putative, group 3 [Desulfocapsa sulfexigens DSM
10523]
gi|451907079|gb|AGF78673.1| rRNA methylase, putative, group 3 [Desulfocapsa sulfexigens DSM
10523]
Length = 270
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 132/284 (46%), Gaps = 52/284 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG--YEKVLKMAENMGISIKE 351
L+G+ PV+ AL + +++ KD+KG E++++ A GI I
Sbjct: 22 LWGIHPVIEALEQEIERVSEIFI------------VKDRKGGKREEIIEKARAAGIKINF 69
Query: 352 TSKHDLNMVVGNRP----HQGLVLDASPLEMVKIKEL-DPISADEDQAS--LWVALDEVT 404
L VG HQG++ S ++ + L D Q + +ALD +
Sbjct: 70 MDSLRL---VGEDAAQVRHQGVIAKMSQTALIPFEVLLDKFQNLVQQGANPRIIALDTLQ 126
Query: 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSS 464
DP N+GAIIRSA+ G G++ + SAP+ G +K+++G++ +++ N+ Q L +
Sbjct: 127 DPHNIGAIIRSAHASGVDGIIATRERSAPIGGTAAKSAAGAMSHIDICQVTNLAQSLQAL 186
Query: 465 AENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVD 524
+ G + G + A L + P +V+GSEGTG+RPLV + C L+ IP
Sbjct: 187 KDVGAWIFGAIKDTDAQSLYQSDLVLPACVVIGSEGTGIRPLVRKQCDVLLSIP------ 240
Query: 525 VTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G++D SLN SVAAGV++ ++
Sbjct: 241 -MEGQLD---------------------SLNSSVAAGVIMFEML 262
>gi|42526951|ref|NP_972049.1| RNA methyltransferase [Treponema denticola ATCC 35405]
gi|449111993|ref|ZP_21748548.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 33521]
gi|449113203|ref|ZP_21749718.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 35404]
gi|41817266|gb|AAS11960.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 35405]
gi|448956274|gb|EMB37035.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 33521]
gi|448960783|gb|EMB41492.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
ATCC 35404]
Length = 258
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + I++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKIEKKDNQFLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSVDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E ++ V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKGSAFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA+P P + T+L++G+EG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKALPNLTFP--KKTVLIMGNEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|170757788|ref|YP_001783140.1| RNA methyltransferase [Clostridium botulinum B1 str. Okra]
gi|429246814|ref|ZP_19210110.1| RNA methyltransferase [Clostridium botulinum CFSAN001628]
gi|169123000|gb|ACA46836.1| RNA methyltransferase, TrmH family, group 3 [Clostridium botulinum
B1 str. Okra]
gi|428756148|gb|EKX78724.1| RNA methyltransferase [Clostridium botulinum CFSAN001628]
Length = 257
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 109/231 (47%), Gaps = 29/231 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
++ +A+ GI I E + L+ + R HQG++ +P + ++++ + +++
Sbjct: 49 IISLAKEKGIVINEVDRKKLDSISQTRAHQGVIAFTTPYQYCAVEDIIRYAKQKEEDPFI 108
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ LDE+ DP N G+I+R+A GA GV++ + + ++ V K S+G++E M++ N+
Sbjct: 109 IILDEIEDPHNFGSILRTAEVCGAHGVIIPKRRNVGVTPTVYKTSAGAVEYMKISKVTNI 168
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ E G + G + + G P LV+GSEG G+ L + C LV+I
Sbjct: 169 NNVIDKLKEKGIWIYGADMCGNDYCFDVNLSG-PIALVIGSEGRGISKLTKNKCDALVKI 227
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
P F + SLN SVA G+L++ ++
Sbjct: 228 P----------------------------MFGNITSLNASVAGGMLMYEIL 250
>gi|404330431|ref|ZP_10970879.1| tRNA/rRNA methyltransferase [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 244
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/239 (26%), Positives = 118/239 (49%), Gaps = 31/239 (12%)
Query: 330 KDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISA 389
KD +G ++L + + GI+++ K L+ + HQG+V + +I +L ++
Sbjct: 29 KDGRGLGELLDLIKTHGIAMQFVPKQKLDQLSRTSNHQGVVASVAAYRYAEITDLFALAQ 88
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ ++ LD + DP NLG+++R+A G G+++ ++S L+ VV+KAS+G++E +
Sbjct: 89 QRHEPPFFLMLDGIEDPHNLGSVLRTADATGCHGIIIPKQHSVGLTSVVAKASTGAIEYV 148
Query: 450 ELRYCNNMMQFLVSSAENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+ + + + G W G+ + + P LV+G+EG G+ LV
Sbjct: 149 PVARVANLANTMDALKKKGVW--FAGTAADGSEDYGTADYSMPVCLVIGNEGAGMSRLVR 206
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ C +L+RIP AG+ V SLN SVAAG+L++ +
Sbjct: 207 KKCDYLIRIP-------MAGK---------------------VTSLNASVAAGLLMYEV 237
>gi|332531978|ref|ZP_08407862.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
[Pseudoalteromonas haloplanktis ANT/505]
gi|332038605|gb|EGI75048.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB
[Pseudoalteromonas haloplanktis ANT/505]
Length = 247
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 83/287 (28%), Positives = 125/287 (43%), Gaps = 40/287 (13%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E ++G V A L ++ F +Y +G +D K ++ A GIS
Sbjct: 1 MSNELIFGFHSVEAILESEPERFVEIYALKG----------RDDKRSTPIIDEARKFGIS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++ + L+ HQG++ + K+LD I A ED L V LD +TDP N
Sbjct: 51 VQFMQRKALDSKSKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLV-LDGITDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +RSA G V++ SA L+G K + G+ E + L N+ + L + G
Sbjct: 110 LGACLRSADAAGVHAVIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
V+G + + + G P +V+G+EG G+R L C LV+IP AG
Sbjct: 170 VWVVGTAGETDNHVFDASLTG-PMAIVMGAEGEGMRRLTREHCDMLVKIP-------MAG 221
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
V SLNVSVA G+ L ++ + +NN
Sbjct: 222 ---------------------TVSSLNVSVATGICLFEVLRQRNANN 247
>gi|52078591|ref|YP_077382.1| tRNA/rRNA methyltransferase YacO [Bacillus licheniformis DSM 13 =
ATCC 14580]
gi|404487460|ref|YP_006711566.1| TrmH-family tRNA/rRNA methyltransferase YacO [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|52001802|gb|AAU21744.1| putative tRNA/rRNA methyltransferase YacO [Bacillus licheniformis
DSM 13 = ATCC 14580]
gi|52346454|gb|AAU39088.1| putative TrmH-family tRNA/rRNA methyltransferase YacO [Bacillus
licheniformis DSM 13 = ATCC 14580]
Length = 249
Score = 99.8 bits (247), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 74/259 (28%), Positives = 126/259 (48%), Gaps = 40/259 (15%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
RE Y L++ E N K + ++V+ +A G++I + L+ +V + HQG
Sbjct: 22 RELYKLWMAE------NTVKGQ----AQQVVDLAAKNGVTIHYVPRKKLDQMVSGQ-HQG 70
Query: 369 LVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+V + E ++ +L + D ++ + LDE+ DP NLG+I+R+A GA G+V+
Sbjct: 71 VVAQVAAYEYAELDDLFQKAEDRNEQPFILVLDEIEDPHNLGSIMRTADAVGAHGIVIPK 130
Query: 429 KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP 488
+ + L+ V+KAS+G++E + + N+ + L G V+G S + +
Sbjct: 131 RRAVGLTTTVAKASTGAIEHIPVVKVTNLSRTLEEMKGRGIWVVGTDASGQQ-DYRSLDG 189
Query: 489 GQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSF 548
P LV+GSEG G+ LV+ C L+R+P AG+
Sbjct: 190 NMPLALVIGSEGKGMGRLVKEKCDFLIRLP-------MAGK------------------- 223
Query: 549 MAVESLNVSVAAGVLLHHL 567
V SLN SVAAG+L++ +
Sbjct: 224 --VTSLNASVAAGLLMYEV 240
>gi|444308291|ref|ZP_21143940.1| RNA methyltransferase [Ochrobactrum intermedium M86]
gi|443488429|gb|ELT51182.1| RNA methyltransferase [Ochrobactrum intermedium M86]
Length = 286
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/271 (29%), Positives = 131/271 (48%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQE------NSGRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K PS V EG LYG+ V AA+ R +
Sbjct: 15 YARLRRQHRDQKAGTEGKSPRKPQRPSISASAVTEGTVRLYGLHTVRAAVENPERRILRM 74
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
L++ N G+ ++ + AE++ ++ D++ G+ HQG++++
Sbjct: 75 -------LATRN-------GFARLEIGEAESLPFPVEIVEPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL + L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRARKLSELK-------DSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LEL+ N+ + + G++ +G S + + G
Sbjct: 174 QETGVLAKAASGALELISHIEVRNLAEAIEELHSLGFQTIGLD-SEGPLEMEATLSGGRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|404318970|ref|ZP_10966903.1| RNA methyltransferase [Ochrobactrum anthropi CTS-325]
Length = 286
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQE------NSGRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K PS V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAVTEGKSPRKPQRPSISASAVTEGTVRLYGLHTVRAAVENPERKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + AE++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL + L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRARKLSELK-------DSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LE++ N+ + + G++ +G S + G
Sbjct: 174 QETGVLAKAASGALEMISHIEVRNLAEAIEELHSLGFQTIGLD-SEGPQEMEATLSGGRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|220908034|ref|YP_002483345.1| TrmH family RNA methyltransferase [Cyanothece sp. PCC 7425]
gi|219864645|gb|ACL44984.1| RNA methyltransferase, TrmH family, group 3 [Cyanothece sp. PCC
7425]
Length = 387
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 122/241 (50%), Gaps = 16/241 (6%)
Query: 282 APSTVPKMVGEG----LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK 337
APS K +G +YG +LAAL ++ R+ ++V N+ + D + +
Sbjct: 113 APSHFTKESTDGDSDLIYGRHTLLAALESE-RQLNRIWVV--------NQLRYDPR-FHS 162
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+L A+ G+ I E L+ + + HQG+ +P +++ L D L
Sbjct: 163 LLLQAKAAGVVIDEVDYLRLDQITAHAKHQGIAAQVAPYSYLELDTLLENIQGLDHPVL- 221
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+A D +TDP NLGAIIR+A GA G+V+ + + ++ V+K ++G+LE + N+
Sbjct: 222 LAADGITDPHNLGAIIRTAEALGAQGLVVPQRRAVGITSTVAKVAAGALEHFAVARVVNL 281
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
Q L G+ + G + ++ A P+ + P +LV+G+EGTGL L +R C LV I
Sbjct: 282 NQALEQLKAAGFWIYGMAATA-AKPIYSVEFSGPVVLVVGAEGTGLSLLAQRYCDQLVSI 340
Query: 518 P 518
P
Sbjct: 341 P 341
>gi|260772094|ref|ZP_05881011.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
metschnikovii CIP 69.14]
gi|260612961|gb|EEX38163.1| 23S rRNA (guanosine-2'-O-) -methyltransferase RlmB [Vibrio
metschnikovii CIP 69.14]
Length = 246
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 128/281 (45%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A + + +YV +G ++D + VL + +G+S
Sbjct: 1 MSNELIYGIHSVNAVMQREPARIIEVYVLKG---------RQDDR-LLPVLNELQRLGLS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E + L+ HQGL+ P + + +LD I + +Q L V LD VTDP N
Sbjct: 51 IQEMGRKALDDKAQGANHQGLIAKVKPAKALNEHDLDAILSQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAP++ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDRSAPMTATVSKVACGAAETVPLVRVTNLARTMRALQEQG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ L P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDLYHSKLTGPLAIVMGAEGDGMRRLTRDTCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA G+ L V
Sbjct: 221 G---------------------SVSSLNVSVATGICLFEAV 240
>gi|304438770|ref|ZP_07398698.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372772|gb|EFM26350.1| RNA methyltransferase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 239
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 75/274 (27%), Positives = 126/274 (45%), Gaps = 43/274 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG ++ AL K ++ +Y GL K K+ MA+ I I E
Sbjct: 4 IYGRNAIIEAL--KNKKVDKIYAAPGL-----------KGSIGKIYAMAKEQKIVIVEAD 50
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K L +VG HQG+V +S E +++++ + + + LDE+ DP N GAI
Sbjct: 51 KKKLKDMVGEVNHQGVVALSSSFEYSQVEDIIAYAKSRGENIKLIMLDEIEDPYNFGAIA 110
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG G+++ + SA ++ V K+S+G++E +++ NN+ Q + EN V G
Sbjct: 111 RSAEAFGFHGIIIPKRRSALVNDAVYKSSAGAIESIKVAVVNNLSQTISELKENSIWVYG 170
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
++ P+ + +V+G+EG GL VE++C L+ IP
Sbjct: 171 ATMEGD--PICDQDLVGNICIVIGNEGKGLGHAVEKNCDELISIP--------------- 213
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
++ SLN SVA G++L+ +
Sbjct: 214 -------------MLGSINSLNASVACGIILYEV 234
>gi|218528187|ref|YP_002419003.1| TrmH family RNA methyltransferase [Methylobacterium extorquens CM4]
gi|218520490|gb|ACK81075.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
extorquens CM4]
Length = 268
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 51/275 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PV AL+ R F+ L E N + + G E + I +
Sbjct: 36 LYGWHPVSQALANAGRHFHRLLATE------NALARLKEAGIE--------LPIEPEMVR 81
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
++ ++G + HQGL +A + LD + D +L +ALD++TDP N+GAI
Sbjct: 82 PSAIDRLLGPDAVHQGLYAEAE---PLAAPALDAMPDD----ALLLALDQITDPHNVGAI 134
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A FG + +V A++S +GV++K++SG LE + L N+ + L++ E G+ +
Sbjct: 135 VRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRI 194
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G S L+ + P +P +LVLG+EG GLR C LVRI
Sbjct: 195 GLD-SDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRI--------------- 238
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
DA G A+ SLNVS AA + L+ L
Sbjct: 239 -DATG------------AIRSLNVSNAAAITLYAL 260
>gi|28212189|ref|NP_783133.1| 23S rRNA methyltransferase [Clostridium tetani E88]
gi|28204633|gb|AAO37070.1| 23S rRNA methyltransferase [Clostridium tetani E88]
Length = 245
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 66/240 (27%), Positives = 118/240 (49%), Gaps = 31/240 (12%)
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +K K++ +A+ I IK K L+ + HQG+ +P + ++E+ +
Sbjct: 29 KGNNKGTINKIISLAKENRIPIKNVDKKKLDEISEGENHQGVAAYTTPYKYYSVEEI--L 86
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ + +A + LDE+ DP N GAIIR+A FG G+++ + S ++ +V K+S G++E
Sbjct: 87 ESSKGKAPFILILDEIQDPHNFGAIIRTAEVFGVDGIIIPKRRSVGITPIVYKSSVGAVE 146
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+++ NN+ + EN + G +++ +E G P LV+GSEG G+ L
Sbjct: 147 HVKIAKVNNINSTIDFLKENNIWIYGADMATDRYIYSENLKG-PIALVVGSEGKGISKLT 205
Query: 508 ERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+ C LV+IP +G+I+ SLN SVA G++++ +
Sbjct: 206 KEKCDILVKIP-------MSGQIN---------------------SLNASVAGGIVMYEI 237
>gi|240136836|ref|YP_002961303.1| rRNA methylase [Methylobacterium extorquens AM1]
gi|254558711|ref|YP_003065806.1| rRNA methylase [Methylobacterium extorquens DM4]
gi|240006800|gb|ACS38026.1| rRNA methylase [Methylobacterium extorquens AM1]
gi|254265989|emb|CAX21739.1| rRNA methylase [Methylobacterium extorquens DM4]
Length = 268
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 51/275 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PV AL+ R F+ L E N + + G E + I +
Sbjct: 36 LYGWHPVSQALANAGRHFHRLLATE------NALARLKEAGIE--------LPIEPEMVR 81
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
++ ++G + HQGL +A + LD + D +L +ALD++TDP N+GAI
Sbjct: 82 PSAIDRLLGPDAVHQGLYAEAE---PLAAPALDAMPDD----ALLLALDQITDPHNVGAI 134
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A FG + +V A++S +GV++K++SG LE + L N+ + L++ E G+ +
Sbjct: 135 VRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRI 194
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G S L+ + P +P +LVLG+EG GLR C LVRI
Sbjct: 195 GLD-SDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRI--------------- 238
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
DA G A+ SLNVS AA + L+ L
Sbjct: 239 -DATG------------AIRSLNVSNAAAITLYAL 260
>gi|387769896|ref|ZP_10126090.1| RNA methyltransferase, TrmH family, group 3 [Pasteurella bettyae
CCUG 2042]
gi|386905652|gb|EIJ70411.1| RNA methyltransferase, TrmH family, group 3 [Pasteurella bettyae
CCUG 2042]
Length = 245
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 131/284 (46%), Gaps = 43/284 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ V + L+ ++V +G ++DK+ + +LK N+GIS++
Sbjct: 3 ENIYGIHAVNSFLTTAPERIIEVFVLKG---------REDKR-LQPLLKELHNLGISVQF 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ L+ HQG++ P + + +LD I A++ + L + LD +TDP NLGA
Sbjct: 53 LNRQTLDNKANGEVHQGIIARVQPAKEMNEHDLDKILANQ-KNPLVLILDGITDPHNLGA 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL--VSSAENGW 469
I+R+A G V++ SA L+ + K + G+ E++ L N+ + + + N W
Sbjct: 112 ILRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLSRTIRDLQQNHNIW 171
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V G+ L + P LV+G+EG G+R L C L+ IP AG
Sbjct: 172 VV--GTAGEATETLYQTKLTGPLALVMGAEGEGMRRLTREHCDQLISIP-------MAG- 221
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
+V SLNVSVA GV L +V ++
Sbjct: 222 --------------------SVSSLNVSVATGVCLFEIVRQNIA 245
>gi|241895139|ref|ZP_04782435.1| TrmH family tRNA/rRNA methyltransferase [Weissella
paramesenteroides ATCC 33313]
gi|241871635|gb|EER75386.1| TrmH family tRNA/rRNA methyltransferase [Weissella
paramesenteroides ATCC 33313]
Length = 268
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 67/254 (26%), Positives = 127/254 (50%), Gaps = 17/254 (6%)
Query: 265 QRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSS 324
QR N+++ G+ E + V YG + AL +T E +++Q GL+ +
Sbjct: 3 QRNNKKQAGGKRQQHEPQGENQAEFV----YGHHAAVEALKGQT-EINKVWLQTGLADKA 57
Query: 325 NNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL 384
N ++ +A+ G+ +++ K L+ + HQG+VL + V I +L
Sbjct: 58 RN----------ELASLAKKRGLVMQDAPKAKLDELTNGENHQGVVLSIAAYAYVTIDDL 107
Query: 385 DPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSG 444
+A++D+A ++ LD + DP NLG+I+R+A G G+++ + + L+ VV+K S+G
Sbjct: 108 FAKAAEKDEAPFFLVLDSIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTSVVAKTSTG 167
Query: 445 SLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLR 504
++E + + N++Q + E G V G ++ T L++G+EG G+
Sbjct: 168 AIEHVPVARVTNLVQTVEQLKERGVWVFGTDMNGN--DYRRWDATGATALIIGNEGKGIS 225
Query: 505 PLVERSCTHLVRIP 518
PL+++S + IP
Sbjct: 226 PLLKKSVDETLTIP 239
>gi|410624867|ref|ZP_11335656.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Glaciecola
mesophila KMM 241]
gi|410155394|dbj|GAC22425.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Glaciecola
mesophila KMM 241]
Length = 246
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/283 (27%), Positives = 125/283 (44%), Gaps = 42/283 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + A + + L+V +G +D K ++ A GI+++
Sbjct: 5 EWLYGIHALEAVIEREPERLIELFVLKG----------RDDKPINSIINHARKFGIAVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ V HQG+V A P + +LD I + L + LD VTDP NLGA
Sbjct: 55 CQRKTLDDKVNGEQHQGIVAKAKPGKQFNENDLDEIIKNSGTPFLLI-LDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
+R+A G +V+ NS L+ VV K + G+ +L+ L N+ + + + G W
Sbjct: 114 CLRTADAAGIDAIVVPKDNSVALTPVVRKVACGAADLIPLVQVTNLARTIREIKDAGVWV 173
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V G+ + + P LV+G+EG G+R L C L+++P AG
Sbjct: 174 V--GTAGEATQSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLP-------MAG-- 222
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
+V SLNVSVA G+ L+ +V + S
Sbjct: 223 -------------------SVSSLNVSVATGICLYEIVRQRTS 246
>gi|291545156|emb|CBL18265.1| rRNA methylase, putative, group 3 [Ruminococcus champanellensis
18P13]
Length = 249
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 30/230 (13%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++ MA++ GI +K ++ L+ + HQG++ + V +++L IS + A
Sbjct: 41 RICTMAKSRGIVVKNVTEQKLSQMANGAAHQGVIATGACASYVTLEDLLDISRKKGTAPF 100
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
+ DE+ DP NLGAIIR+A GA GV++ + SA L+ V K S+G+ + + N
Sbjct: 101 LIVCDEIEDPHNLGAIIRTAETAGADGVIIPKRRSASLNATVHKTSAGAASWLPVARVAN 160
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ L + E G + G S A +++ P LV+GSEG G+ LV C L+R
Sbjct: 161 LAAALDTLKEAGVWIYGTDASGDA--YDKVDLTGPVALVIGSEGFGMGRLVREKCDFLLR 218
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
+P G I SLN SVAAG+ ++
Sbjct: 219 LP-------MCGRI---------------------TSLNASVAAGIFMYE 240
>gi|395782027|ref|ZP_10462436.1| RNA methyltransferase, TrmH family, group 3 [Bartonella
rattimassiliensis 15908]
gi|395419878|gb|EJF86164.1| RNA methyltransferase, TrmH family, group 3 [Bartonella
rattimassiliensis 15908]
Length = 276
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 112/232 (48%), Gaps = 27/232 (11%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAE-NMGISIKET 352
LYG+ V AAL R F LY+ + N K+ L M+E + +
Sbjct: 46 LYGIHSVYAALKNPKRIFKCLYITQ------NALKR---------LNMSESDYPCPVTLC 90
Query: 353 SKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ +VGN HQG+VL+ PL+ K+ EL L + +D++TDP N+GA
Sbjct: 91 TPKYLDSLVGNEAVHQGIVLETFPLKPCKLSELT-------NTDLVIVMDQITDPHNVGA 143
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RSA F A ++ +S SGV++KA+SG+LE++ N+ + L + G+
Sbjct: 144 IMRSAVAFKAKALITTCHHSPHESGVLAKAASGALEMIPYITVRNLAETLQELHQTGFTS 203
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G S L G LVLG+EG GLR + L R+ PGNI
Sbjct: 204 FGLD-SEGNQSLETTLKGNKIALVLGAEGKGLRKKTRETVCTLARLDMPGNI 254
>gi|342215237|ref|ZP_08707891.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
taxon 780 str. F0422]
gi|341588734|gb|EGS32110.1| RNA methyltransferase, TrmH family, group 3 [Veillonella sp. oral
taxon 780 str. F0422]
Length = 239
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/230 (30%), Positives = 116/230 (50%), Gaps = 34/230 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-DPISADEDQAS 395
++L +A++ GI ++ + DL + P+QG+V + + VK +EL D + A ++
Sbjct: 37 EILGLAKSKGIEVRRVKERDLQKYPSDVPNQGVV---ALVNAVKFQELQDVLLACTEEHP 93
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L + D V DP N+GAIIR+A GA+ V++ +++AP++ VSK S+G++E + L
Sbjct: 94 LLILTDGVEDPHNMGAIIRTAECVGATAVLIPKRHNAPINATVSKTSAGAVESIPLVQIG 153
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ Q + G+ V+G + + ++ P +LV+G+EG GL L + C LV
Sbjct: 154 NVAQTIEQLKSQGFWVMGAHMDGTV--MYDVNMTGPIVLVIGNEGKGLSRLTKELCDVLV 211
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
IP F + SLN SVAA VLL+
Sbjct: 212 TIP----------------------------MFGTINSLNASVAAAVLLY 233
>gi|429204787|ref|ZP_19196070.1| tRNA/rRNA methyltransferase [Lactobacillus saerimneri 30a]
gi|428147010|gb|EKW99243.1| tRNA/rRNA methyltransferase [Lactobacillus saerimneri 30a]
Length = 248
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 101/183 (55%), Gaps = 2/183 (1%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
++V K A+ GI + K L+ +V ++ HQG+V+ +P E I +L ++A ++
Sbjct: 41 KEVEKQAKQRGIIVSWVPKTKLDTLVDHQNHQGVVVAVAPYEYASIDDLFAVAAQREEDP 100
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
++ LD + DP NLG+I+R+A G G+++ + + L+ V+K S+G++E M +
Sbjct: 101 FFLILDGIEDPHNLGSIMRTADAAGVHGIIIPKRRAVQLTATVAKTSTGAIEYMPVARVT 160
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N++Q + G + G + + + P LV+G+EG G+ PL++++C ++
Sbjct: 161 NLVQTAKELKQRGLWLFGTDM--QGTDYRKWDAHGPVALVIGNEGKGISPLLKKNCDEML 218
Query: 516 RIP 518
IP
Sbjct: 219 TIP 221
>gi|386359555|ref|YP_006057800.1| rRNA methylase [Thermus thermophilus JL-18]
gi|383508582|gb|AFH38014.1| rRNA methylase, putative, group 3 [Thermus thermophilus JL-18]
Length = 238
Score = 99.8 bits (247), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 111/226 (49%), Gaps = 19/226 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK-VLKMAENMGISIKET 352
+YG PVL AL A R+ +G E +LK E +G
Sbjct: 3 IYGRNPVLEALRA-----------------GRARRVLVARGVEGWLLKELERLGAPYTLV 45
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ +L+ ++ HQG+ + +++ ++A + L VALD VTDP+N GA+
Sbjct: 46 PRIELDTLLRTTHHQGIAAEVEDPTYASLEDALRLAASRKEPPLLVALDGVTDPRNYGAM 105
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IRSA GA GV+ + +APLS + KAS+G+ + + N+ + L + E G V
Sbjct: 106 IRSALALGAHGVLSEERRAAPLSPLALKASAGAALKLPVVKVKNLPRTLKALKEEGLWVY 165
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G V + P E+ +P +LV+GSEG G+R LV +C L RIP
Sbjct: 166 GLDVRGEKAPW-ELDYARPLVLVVGSEGEGMRRLVRETCDELFRIP 210
>gi|398889673|ref|ZP_10643452.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM55]
gi|398189121|gb|EJM76404.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM55]
Length = 255
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 127/273 (46%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG +D + ++++A + + +
Sbjct: 5 EKIYGVHAVEALLRHHPKRVKQIWLAEG----------RDDPRVQTLIELANENRVQVGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 55 AERREMDAWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 114 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+ G+ V L + PTIL++G+EG G+R L C +LV +P AG
Sbjct: 174 V-GTAGEAEVSLYDQDLTGPTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 223 ------------------SVSSLNVSVATGVCL 237
>gi|86605012|ref|YP_473775.1| RNA methyltransferase [Synechococcus sp. JA-3-3Ab]
gi|86553554|gb|ABC98512.1| RNA methyltransferase, TrmH family, group 3 [Synechococcus sp.
JA-3-3Ab]
Length = 354
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 83/276 (30%), Positives = 124/276 (44%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG VLAAL ++ ++V L S + +L+ A+ G I E
Sbjct: 95 EIIYGRQTVLAALRSQA-TLNRVWVLPRLRYSPQ---------FWSLLEEAKARGTVIDE 144
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S LN++ HQG+ A+P V ++EL S + V LD + DP NLGA
Sbjct: 145 VSLQRLNLLTAGANHQGIAAQATPYRYVDLEELVEQSRQSGPHPVLVVLDGIQDPHNLGA 204
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I RS FG G+V+ + +A ++ V K ++G+L + + N+ + L G+ V
Sbjct: 205 IARSVEAFGMQGMVIPQRRAAGVTATVMKVAAGALSTLPVARVVNLNRALEYLKGQGFWV 264
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G + S A P+ +P LV+GSEG G+ L +R C L+ IP AG
Sbjct: 265 YG-TTSQGAAPIYSADFRRPIALVVGSEGEGISLLTQRHCDQLLSIP-------LAGR-- 314
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAG+ L+ +
Sbjct: 315 -------------------TESLNASVAAGIALYEI 331
>gi|410617427|ref|ZP_11328395.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Glaciecola polaris
LMG 21857]
gi|410162990|dbj|GAC32533.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Glaciecola polaris
LMG 21857]
Length = 246
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 123/278 (44%), Gaps = 42/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + + + + L+V +G +D K ++ A GI+++
Sbjct: 5 EWLYGIHALESVIEREPERLIELFVLKG----------RDDKPINNIINHARKFGIAVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ V HQG+V A P + +LD I + + V LD VTDP NLGA
Sbjct: 55 CQRKTLDEKVNGEQHQGVVAKAKPGKQFNESDLDEIIKNSTTPFILV-LDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
+R+A G +V+ NS L+ VV K + G+ +L+ L N+ + L + G W
Sbjct: 114 CLRTADAAGIDAIVVPKDNSVALTPVVRKVACGAADLIPLVQVTNLARTLREIKDAGVWV 173
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V G+ + E P LV+G+EG G+R L C L+++P AG
Sbjct: 174 V--GTAGEATQSIYECKMQGPIALVMGAEGKGMRRLTREHCDELIKLP-------MAG-- 222
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA G+ L+ +V
Sbjct: 223 -------------------SVSSLNVSVATGICLYEIV 241
>gi|378948516|ref|YP_005206004.1| protein RlmB [Pseudomonas fluorescens F113]
gi|359758530|gb|AEV60609.1| RlmB [Pseudomonas fluorescens F113]
Length = 252
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 132/273 (48%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV++P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVKLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|121535684|ref|ZP_01667488.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
carboxydivorans Nor1]
gi|121305715|gb|EAX46653.1| RNA methyltransferase, TrmH family, group 3 [Thermosinus
carboxydivorans Nor1]
Length = 248
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/182 (31%), Positives = 98/182 (53%), Gaps = 1/182 (0%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++ +A G+ ++E L+ + HQG+V +P+ V + E+ + + +A
Sbjct: 38 EIVGLAREQGLVVQEVDAAKLDALAMGVRHQGVVAMVAPVAYVDVDEILVQAQTKGEAPF 97
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP N+GAI+R+A G GV+L + S PLS V+K S+G++E + + N
Sbjct: 98 LVLLDELEDPHNVGAILRTADATGVHGVLLPKRRSCPLSATVAKTSAGAIEYVPVARIGN 157
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
++Q L + G V+G ++ E P ++V+GSEG G+ L +C LVR
Sbjct: 158 IVQTLEKLKKAGLWVVGADMAGDK-AYYETDLTGPLVVVVGSEGRGMGRLTREACDFLVR 216
Query: 517 IP 518
IP
Sbjct: 217 IP 218
>gi|359439841|ref|ZP_09229772.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20429]
gi|359452247|ref|ZP_09241600.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20495]
gi|392534727|ref|ZP_10281864.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
arctica A 37-1-2]
gi|414072196|ref|ZP_11408146.1| 23S rRNA (guanosine-2'-O)-methyltransferase [Pseudoalteromonas sp.
Bsw20308]
gi|358038316|dbj|GAA66021.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20429]
gi|358050675|dbj|GAA77849.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Pseudoalteromonas
sp. BSi20495]
gi|410805354|gb|EKS11370.1| 23S rRNA (guanosine-2'-O)-methyltransferase [Pseudoalteromonas sp.
Bsw20308]
Length = 247
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 125/287 (43%), Gaps = 40/287 (13%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E ++G V A L ++ F +Y +G +D K ++ A GIS
Sbjct: 1 MSNELIFGFHSVEAILESEPERFVEIYALKG----------RDDKRSTPIIDEARKFGIS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
++ + L+ HQG++ + K+LD I A ED L V LD +TDP N
Sbjct: 51 VQFMQRKALDSKSKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLV-LDGITDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +RSA G +++ SA L+G K + G+ E + L N+ + L + G
Sbjct: 110 LGACLRSADAAGVHAIIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAG 528
V+G + + + G P +V+G+EG G+R L C LV+IP AG
Sbjct: 170 VWVVGTAGETDNHVFDASLTG-PMAIVMGAEGEGMRRLTREHCDMLVKIP-------MAG 221
Query: 529 EIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
V SLNVSVA G+ L ++ + +NN
Sbjct: 222 ---------------------TVSSLNVSVATGICLFEVLRQRNANN 247
>gi|218290034|ref|ZP_03494201.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius LAA1]
gi|218239868|gb|EED07056.1| RNA methyltransferase, TrmH family, group 3 [Alicyclobacillus
acidocaldarius LAA1]
Length = 255
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/270 (31%), Positives = 132/270 (48%), Gaps = 48/270 (17%)
Query: 300 VLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNM 359
VLAAL ++ R ++V EG S G + ++ A + G+ ++ + L+
Sbjct: 29 VLAALESE-RPVNKVWVAEGAS------------GMDAIVAKARSRGVVVQFVPRSRLDE 75
Query: 360 VVGNRPHQGLVLDASPLEMVKIKELDPISA-DEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ HQG++ +P V +LD ++ D + L V LDE+ DP N GAI+R+A
Sbjct: 76 MAS--AHQGVIAQVAPYAYV---DLDDVTRRDTGFSPLVVVLDEIADPHNFGAILRTAEA 130
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSS 478
GA GVV+ + A ++ VV+KA++G+LE + + N+ Q L + G+ ++G V +
Sbjct: 131 AGAQGVVIGKRRQAQVTDVVAKAAAGALEALPVARVANVAQALQRLKQAGYWIVGADVEA 190
Query: 479 KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGN 538
K VP E+ PT +V+GSEG G+R V C LV IP
Sbjct: 191 K-VPYTEVDYRGPTAVVIGSEGQGMRRWVREQCDFLVSIP-------------------- 229
Query: 539 HGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
V+SLN SVAAGVLL+ V
Sbjct: 230 --------ILGRVQSLNASVAAGVLLYEAV 251
>gi|269798074|ref|YP_003311974.1| TrmH family RNA methyltransferase [Veillonella parvula DSM 2008]
gi|269094703|gb|ACZ24694.1| RNA methyltransferase, TrmH family, group 3 [Veillonella parvula
DSM 2008]
Length = 243
Score = 99.4 bits (246), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/239 (28%), Positives = 118/239 (49%), Gaps = 35/239 (14%)
Query: 332 KKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE 391
K G ++ +A++ GI ++ T +N PHQG++ S ++ ++ E+ +
Sbjct: 32 KTGLADIVDLAKSQGIEVRPTPVKQMNKYDLEVPHQGVIALVSAVQFKELGEV--LQETT 89
Query: 392 DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL 451
+ L + D V DP N+GAIIR+A GA+ V++ +++AP++ V+K S+G++E + L
Sbjct: 90 HEVPLLILTDGVEDPHNMGAIIRTAECAGATAVLIPKRHNAPINATVAKTSAGAIEQIPL 149
Query: 452 RYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSC 511
N+ Q + + G+ V+G + L E PT++V+G+EG G+ +V+ +C
Sbjct: 150 VQIGNVTQTIKQLQKQGFWVMGAHMEGDRT-LYEADMTIPTVIVIGNEGKGISRVVKEAC 208
Query: 512 THLVRIP--GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
LV IP GN+ SLN SVAA VL++ V
Sbjct: 209 DFLVTIPMYGNL------------------------------NSLNASVAAAVLMYEAV 237
>gi|373493794|ref|ZP_09584404.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium infirmum
F0142]
gi|371969499|gb|EHO86944.1| RNA methyltransferase, TrmH family, group 3 [Eubacterium infirmum
F0142]
Length = 246
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/229 (30%), Positives = 118/229 (51%), Gaps = 22/229 (9%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+ G PV+ AL + R + +Q+G S S KV +A+ GI I++
Sbjct: 7 IIGRNPVIEALKS-GRGISGVIIQKGASGS-----------IAKVYDLAKKNGIKIEQAE 54
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K +L+ + + HQG+V A+ +K++ + +L V LDE+ DP NLGAI+
Sbjct: 55 KTELDKLCKGKGHQGVVAFAAARSFADMKDIYKRVEAGGENALIVILDELEDPHNLGAIM 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV-- 471
RSA GA G+++ NS L+ V+K S+G++E M N+ + + +NG+ +
Sbjct: 115 RSAECAGACGIIISKHNSCGLTETVAKTSAGAIEYMPCVQVTNIAKTIDELKKNGFWIAA 174
Query: 472 --LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ GS+ ++A ++ LV+G+EG G+R LV+ C +V IP
Sbjct: 175 CDMNGSLYTEADMRGKLA------LVIGNEGKGIRQLVKSKCDFVVSIP 217
>gi|296128533|ref|YP_003635783.1| TrmH family RNA methyltransferase [Cellulomonas flavigena DSM
20109]
gi|296020348|gb|ADG73584.1| RNA methyltransferase, TrmH family, group 3 [Cellulomonas flavigena
DSM 20109]
Length = 333
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 70/232 (30%), Positives = 109/232 (46%), Gaps = 30/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
+++ +A + G + E + +L+ + HQG+ L P E + +L + L
Sbjct: 125 EIVSIAADAGHPLLEVGRAELDRLTDGAVHQGVALQVPPYEYLDPDDLLDTAESSQTVPL 184
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
VALD +TDP+NLGA++RSA FGA GV++ + +A ++ K S+G+ + + N
Sbjct: 185 VVALDGITDPRNLGAVLRSAGAFGAHGVLVPERRAAGVTASAWKVSAGAAARVPVARATN 244
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLV 515
+ + L G V+G VPL ++P P +LV+GSEG GL LV C +V
Sbjct: 245 LTRALQDYRRAGVFVVGLDAGGD-VPLADLPFAADPLVLVVGSEGKGLSRLVREQCDAIV 303
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
IP AVESLN VAAG+ L+ +
Sbjct: 304 SIP----------------------------IASAVESLNAGVAAGIALYEV 327
>gi|449126198|ref|ZP_21762491.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
OTK]
gi|448938390|gb|EMB19321.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
OTK]
Length = 258
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/239 (30%), Positives = 116/239 (48%), Gaps = 37/239 (15%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVKIKELDPISAD 390
+K+L+ A + + I++ L+ + P H+G+VL K +D A
Sbjct: 44 KKILEAARKLNLKIEKKDNQFLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAK 103
Query: 391 --EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
E + V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKDSGFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALAW 163
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVE 508
+ N+++ + + G+ + G KA L+++ + T+L++GSEG G+ LVE
Sbjct: 164 VPFVEVTNLVRTVERLKKEGFWIYGADAGGKA--LSDLTFPKKTVLIMGSEGRGMSRLVE 221
Query: 509 RSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 222 ETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|424031837|ref|ZP_17771263.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HENC-01]
gi|424042079|ref|ZP_17779876.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HENC-02]
gi|408877102|gb|EKM16201.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HENC-01]
gi|408890003|gb|EKM28253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Vibrio cholerae
HENC-02]
Length = 247
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 135/286 (47%), Gaps = 42/286 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L + F +V +G ++D + +L + G+S
Sbjct: 1 MSNEFIYGIHAVKAVLEREPERFIEAFVLKG---------RQDDR-LMPILNDLQVCGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ ++ L+ HQG++ P + + ++D I A + ++ L + LD VTDP N
Sbjct: 51 IQQMTRKTLDDKARGANHQGIIARVKPAKQLNENDIDGILA-QHESPLLLVLDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + +++ SAP++ VSK + G+ E++ L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 IWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
G +V SLNVSVA+G+ L V +++
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAVRQRIA 245
>gi|384200549|ref|YP_005586292.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
gi|320459501|dbj|BAJ70122.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis ATCC
15697 = JCM 1222]
Length = 330
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+++K+A G+ + E + +++ + + HQG++L P + + EL + + +A
Sbjct: 104 EIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKKAKAME 163
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 164 AANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVS 223
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + L E G+ V+G + P ++VLGSEG+G
Sbjct: 224 AGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSG 283
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP + +VESLN SVAAG+
Sbjct: 284 LGRLVRETCDAIAGIPIS----------------------------SSVESLNASVAAGI 315
Query: 563 LLH 565
L+
Sbjct: 316 SLY 318
>gi|336112779|ref|YP_004567546.1| TrmH family RNA methyltransferase [Bacillus coagulans 2-6]
gi|335366209|gb|AEH52160.1| RNA methyltransferase, TrmH family, group 3 [Bacillus coagulans
2-6]
Length = 247
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 135/277 (48%), Gaps = 43/277 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL AL A RE +++ EG K ++V+++A ++++
Sbjct: 4 EYIAGKNPVLEALRAG-REINKIWIAEG----------SQKGATKQVMELARERKVAVQF 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K ++ V + HQG++ + + ++ ++ + ++ + LDE+ DP NLG+
Sbjct: 53 VPKKRIDQV-ADGAHQGVLALVAAYRYAETGDMFKLAKERNEHPFILILDELEDPHNLGS 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
I+R+A GA GV++ + S L+ V+KAS+G++E + + N+ Q + + G W
Sbjct: 112 ILRTADAVGAHGVIIPKRRSVALTATVAKASTGAIEHIPVARVTNLSQTIAGLKQQGLW- 170
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
+ G+ +S ++ P LV+GSEG G+ +V+ +C L+R+P AG
Sbjct: 171 -IAGTDASGTTDYRQMDADLPLGLVIGSEGRGMSRIVKEACDFLIRLP-------MAGH- 221
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
V SLN SVAAG+L++ +
Sbjct: 222 --------------------VTSLNASVAAGLLMYEV 238
>gi|332307764|ref|YP_004435615.1| TrmH family RNA methyltransferase [Glaciecola sp. 4H-3-7+YE-5]
gi|410642237|ref|ZP_11352752.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Glaciecola
chathamensis S18K6]
gi|332175093|gb|AEE24347.1| RNA methyltransferase, TrmH family, group 3 [Glaciecola sp.
4H-3-7+YE-5]
gi|410138187|dbj|GAC10939.1| 23S rRNA (guanosine2251-2'-O)-methyltransferase [Glaciecola
chathamensis S18K6]
Length = 246
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/278 (29%), Positives = 122/278 (43%), Gaps = 42/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + A + + L+V +G +D K ++ A GI+++
Sbjct: 5 EWLYGIHALEAVIEREPERLIELFVLKG----------RDDKPINTIINHARKFGIAVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ V HQG+V A P + +LD I L V LD VTDP NLGA
Sbjct: 55 CQRKTLDDKVNGEQHQGVVAKAKPGKQFNENDLDDIIKKSATPFLLV-LDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
+R+A G +V+ NS L+ VV K + G+ +L+ L N+ + L + G W
Sbjct: 114 CLRTADAAGIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWV 173
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V G+ + + P LV+G+EG G+R L C L+++P AG
Sbjct: 174 V--GTAGEATQSIYQCKMQGPIALVMGAEGKGMRRLTREHCDELIKLP-------MAG-- 222
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L+ +V
Sbjct: 223 -------------------SVSSLNVSVATGVCLYEIV 241
>gi|150392179|ref|YP_001322228.1| RNA methyltransferase [Alkaliphilus metalliredigens QYMF]
gi|149952041|gb|ABR50569.1| RNA methyltransferase, TrmH family, group 3 [Alkaliphilus
metalliredigens QYMF]
Length = 248
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/278 (26%), Positives = 130/278 (46%), Gaps = 40/278 (14%)
Query: 296 GVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355
G PVL AL A RE L + +G S +K++ MA++ I ++ +
Sbjct: 8 GRNPVLEALKA-GREIDKLLIAKGAEEGS----------MKKIIGMAKDQNIIVQYVERQ 56
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
L+ + + HQG++ + E ++ + + + ++ + LDE+ DP NLG+IIR+
Sbjct: 57 KLDQISESHAHQGVIAQVAAYEYSDVETILENAQKKGKSPFILILDEIMDPHNLGSIIRT 116
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A G G+++ + + L+ VV+K S+G++E + + +N+ Q + E G V G
Sbjct: 117 ADAVGVDGIIIPKRRAVGLTAVVAKTSAGAIEYVPVAKVSNISQTIDKLKEKGVWVAGAD 176
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
+ K + G LV+G EG+G+ LV+ C LV++P AG+
Sbjct: 177 MKGKQLHFEADFKG-ALALVIGGEGSGISRLVKEKCDFLVKLP-------MAGQ------ 222
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
V SLN SVAA VL++ ++S
Sbjct: 223 ---------------VSSLNASVAAAVLMYEAYRQRIS 245
>gi|125974550|ref|YP_001038460.1| RNA methyltransferase [Clostridium thermocellum ATCC 27405]
gi|256004091|ref|ZP_05429076.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|281419074|ref|ZP_06250091.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|385779988|ref|YP_005689153.1| TrmH family RNA methyltransferase [Clostridium thermocellum DSM
1313]
gi|419721333|ref|ZP_14248497.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum AD2]
gi|419726889|ref|ZP_14253909.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum YS]
gi|125714775|gb|ABN53267.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum ATCC 27405]
gi|255992014|gb|EEU02111.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 2360]
gi|281407223|gb|EFB37484.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum JW20]
gi|316941668|gb|ADU75702.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum DSM 1313]
gi|380769854|gb|EIC03754.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum YS]
gi|380782503|gb|EIC12137.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
thermocellum AD2]
Length = 277
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 107/192 (55%), Gaps = 4/192 (2%)
Query: 329 KKDKKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPI 387
K +K+G +++ +A GI ++ET + +L+ + HQG++ + + V++ ++ I
Sbjct: 61 KGEKEGSIRQIIALARERGIVVQETDRSNLDKISTTHAHQGVIAYVAFKDYVEVDDILKI 120
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
+ D+ + + LD +TD NLG+I+R+A GA GVV+ + + L+ VSKAS+G++E
Sbjct: 121 AQDKGEDPYIIILDGITDAYNLGSILRTADAVGAHGVVIPKRRAIGLNAAVSKASAGAIE 180
Query: 448 LMELRYCNNMMQFL-VSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
+ + N+ Q + +N W ++G +S + P E P LV+GSEG G+ L
Sbjct: 181 YVPVARVTNISQTIEYLKKKNIW-IVGTDLSGEK-PFFEADLKGPVALVIGSEGEGMGRL 238
Query: 507 VERSCTHLVRIP 518
V C +V IP
Sbjct: 239 VSEKCDFIVNIP 250
>gi|398923652|ref|ZP_10660842.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM48]
gi|398951848|ref|ZP_10674358.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM33]
gi|426407376|ref|YP_007027475.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas sp. UW4]
gi|398155821|gb|EJM44252.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM33]
gi|398174981|gb|EJM62757.1| rRNA methylase, putative, group 3 [Pseudomonas sp. GM48]
gi|426265593|gb|AFY17670.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas sp. UW4]
Length = 255
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 82/273 (30%), Positives = 127/273 (46%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG ++ + ++++A + + +
Sbjct: 5 EKIYGVHAVEALLRHHPKRVKQIWLAEG----------RNDPRVQTLIELANENRVQVGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +++ V HQG+V D SP ++ LD + D A L + LD VTDP NLGA
Sbjct: 55 AERREMDAWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTDGAPLLLVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 114 CLRSADAAGALAVIVPKDKSATLTPVVRKIACGAAEVIPLVAVTNLARTLEKLQQRGLWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+ G+ V L + PTIL++G+EG G+R L C +LV +P AG
Sbjct: 174 V-GTAGEAEVSLYDQDLTGPTILIMGAEGKGMRRLTREHCDYLVNLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 223 ------------------SVSSLNVSVATGVCL 237
>gi|390937724|ref|YP_006395284.1| putativetRNA/rRNA methyl transferase [Bifidobacterium bifidum BGN4]
gi|389891338|gb|AFL05405.1| putativetRNA/rRNA methyl transferase [Bifidobacterium bifidum BGN4]
Length = 332
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 115/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA-- 394
+++K+A + + E + +++ + + HQG+VL P + + EL I+ + +A
Sbjct: 103 EIIKLAGAQSLHLLEADRLEMDRIARSSNHQGVVLKVQPYQYSSLAELADIAERKAKAMD 162
Query: 395 ------------SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA IRSA FGA+GV+L + SA ++ K S
Sbjct: 163 VVNSPSARINARPLFIALDGVTDPQNLGAAIRSAAAFGANGVILPERRSASVTAAAWKVS 222
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ + + N+ + + S E G+ +G + P I+VLGSEG G
Sbjct: 223 AGAAAHIPVARVVNLTKAIESMRERGYYTVGLDGGGDKLVGETGFETDPLIVVLGSEGKG 282
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV SC + IP +T+ VESLN SVAAG+
Sbjct: 283 LSRLVRESCDAIAGIP------ITS----------------------MVESLNASVAAGI 314
Query: 563 LLH 565
L+
Sbjct: 315 SLY 317
>gi|428780657|ref|YP_007172443.1| rRNA methylase [Dactylococcopsis salina PCC 8305]
gi|428694936|gb|AFZ51086.1| rRNA methylase, putative, group 3 [Dactylococcopsis salina PCC
8305]
Length = 302
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/225 (28%), Positives = 111/225 (49%), Gaps = 11/225 (4%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG VLAAL + R+ +++ L S++ + +L+ A+ G I E
Sbjct: 50 IYGRHTVLAALEGQ-RQLNRIWITPKLRYSAS---------FNSLLQTAKKQGSIIDEVE 99
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
LN + HQG+ +P + + EL + + + +A + +TDPQNLGAII
Sbjct: 100 MDRLNQITEGANHQGIAAQVAPYPYLDLTELMEKARSSSEKPIIIAAEGITDPQNLGAII 159
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + + ++ V K ++G LE + + N + L + G+ +
Sbjct: 160 RTAEALGAQGLVIPQRRAVGITSTVMKVAAGGLEYLPVARVVNFSRALEELKKAGFWIY- 218
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G+V+ + L ++ Q +LV+G E GL L +R C LV IP
Sbjct: 219 GTVAGEGTLLPQVNFDQSVVLVIGGEAKGLNLLTQRHCDQLVSIP 263
>gi|399072723|ref|ZP_10750270.1| rRNA methylase, putative, group 3 [Caulobacter sp. AP07]
gi|398042478|gb|EJL35489.1| rRNA methylase, putative, group 3 [Caulobacter sp. AP07]
Length = 248
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 91/158 (57%), Gaps = 8/158 (5%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQG+ L P E + + +L + L V D++TDPQN+GAI RSA FGA G +
Sbjct: 76 HQGIALKIDPPEALSVYDLGTPAQ-----GLLVMFDQITDPQNIGAIFRSAVAFGARGAI 130
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
L +++ LSGV++K + G+++ + N+ + L + GWR +G + ++ L++
Sbjct: 131 LQDRHAPELSGVLAKTAVGAVDKLPYARVVNLSRALEELTDLGWRAVGLAGDAEQT-LDQ 189
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
+ G+PT+LVLGSEG G+R LV C + +I PG
Sbjct: 190 VLDGRPTVLVLGSEGDGVRRLVAEHCDVMGKIAMPGGF 227
>gi|300857265|ref|YP_003782249.1| rRNA methylase [Clostridium ljungdahlii DSM 13528]
gi|300437380|gb|ADK17147.1| predicted rRNA methylase [Clostridium ljungdahlii DSM 13528]
Length = 266
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 29/235 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+L A+ I +K+ + L+ + HQG++ +P + +++++ + ++ +A
Sbjct: 56 ILAKAKEKHIVVKQVDRKKLDKISQTGAHQGVIAQITPYKYCEVEDILEYAREKKEAPFI 115
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ LDE+ DP N GAIIR+A GA G+++ + + ++ VV K+S G+ E M++ N+
Sbjct: 116 IVLDEIEDPHNFGAIIRTAEICGAHGIIIPKRRNVGITPVVYKSSVGAAEYMKICKVTNL 175
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ ++G V G +S + + G P L++GSEG G+ L + C LV+I
Sbjct: 176 NTTIEKLKKDGIWVYGADMSGENYCFDVDFKG-PAALIIGSEGRGIAKLTKEKCDVLVKI 234
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572
P G V SLN SVA G+L++ ++ ++
Sbjct: 235 P-------MVGR---------------------VSSLNASVAGGILMYEILKQRI 261
>gi|47094582|ref|ZP_00232234.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
str. 4b H7858]
gi|254853492|ref|ZP_05242840.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300764634|ref|ZP_07074626.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
gi|404279791|ref|YP_006680689.1| TrmH family RNA methyltransferase [Listeria monocytogenes SLCC2755]
gi|404285608|ref|YP_006692194.1| TrmH family RNA methyltransferase [Listeria monocytogenes serotype
7 str. SLCC2482]
gi|47017042|gb|EAL07923.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
str. 4b H7858]
gi|258606864|gb|EEW19472.1| RNA methyltransferase [Listeria monocytogenes FSL R2-503]
gi|300514741|gb|EFK41796.1| hypothetical protein LMHG_11120 [Listeria monocytogenes FSL N1-017]
gi|404226426|emb|CBY47831.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
SLCC2755]
gi|404244537|emb|CBY02762.1| RNA methyltransferase, TrmH family, group 3 [Listeria monocytogenes
serotype 7 str. SLCC2482]
Length = 251
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 120/232 (51%), Gaps = 23/232 (9%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG-YEKVLKMAENMGISIK 350
E + G PVL L + R+ + +YVQEG +KG ++VL +A+ I ++
Sbjct: 8 EWIGGRNPVLEVLRSD-RDIHKIYVQEG-----------SQKGVLKQVLTLAKERKIQVQ 55
Query: 351 ETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLG 410
K + VVG HQG+ + + ++ +L + +D+ ++ LDE+ DP NLG
Sbjct: 56 FVPKQKIEKVVGG-AHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFIILDELEDPHNLG 114
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWR 470
+I+R+A GA G+++ + S L+ V+KAS+G++E + + NM++ + + G
Sbjct: 115 SIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLW 174
Query: 471 VLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ G GS + + ++ P +V+GSEG G+ LV C LV +P
Sbjct: 175 IFGTDAKGSSDYRTMDVD-----MPLAIVIGSEGFGMSRLVREKCDFLVHLP 221
>gi|27380610|ref|NP_772139.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
gi|27353775|dbj|BAC50764.1| tRNA/rRNA metyltransferase [Bradyrhizobium japonicum USDA 110]
Length = 308
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 61/162 (37%), Positives = 91/162 (56%), Gaps = 18/162 (11%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I+ L P + + LD++TDP N+GAI+RSA F +V
Sbjct: 134 HQGLLAEADPLPSPDIETLTP-------EGMVLVLDQITDPHNVGAILRSAAAFAVKAIV 186
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAV 481
A++S +GV++KA+SG+LEL+ + N+ + L + E G++ +G GS V
Sbjct: 187 TTARHSPEATGVLAKAASGALELVPVVTVQNLARALTALNERGFQTVGLDSEGSEDLSNV 246
Query: 482 PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
L E P LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 247 ALRE-----PLALVLGAEGKGLRQLTRETCSVVARLDMPGEI 283
>gi|220930680|ref|YP_002507589.1| TrmH family RNA methyltransferase [Clostridium cellulolyticum H10]
gi|220001008|gb|ACL77609.1| RNA methyltransferase, TrmH family, group 3 [Clostridium
cellulolyticum H10]
Length = 315
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 152/333 (45%), Gaps = 59/333 (17%)
Query: 248 RNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAP----------STVPKMVGEGLYGV 297
R SF D K R++ + + E +GR + A S VP+ + L G
Sbjct: 25 RKSFTGDDKKRSKFGD----RKGETAGRGPYMAPAKDLGFENIEKDSAVPEE-SDKLEGR 79
Query: 298 GPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG-YEKVLKMAENMGISIKETSKHD 356
V+ AL A R L++ +G +K+G +++ +A GI E K
Sbjct: 80 NSVMEALKA-NRTINKLFIAKG-----------EKEGSIRQIIALARQKGIITTEVDKII 127
Query: 357 LNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSA 416
L+ + R HQG++ + + V++ ++ ++ + + + LDE++DP N GAI+R+A
Sbjct: 128 LDGMSTTRSHQGVIAYVAVKDYVEVDDILAVAQENGEPPFIIILDEISDPHNFGAILRTA 187
Query: 417 YFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVLGGS 475
GA GV++ + + L+ V+KAS+G++E + + N+ Q + +N W V S
Sbjct: 188 NAVGAHGVIIPKRRAIGLTSTVAKASAGAVEYVPVSRVTNISQTIEYLKKNNVWVVGTDS 247
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDA 535
KA +++ P LV+GSEG G+ LV C +V IP GEI
Sbjct: 248 TGEKAFYESDLK--GPIALVVGSEGEGMGKLVREKCDFVVNIP-------MQGEI----- 293
Query: 536 DGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
SLN SVAA ++++ ++
Sbjct: 294 ----------------SSLNASVAAAIVMYEIL 310
>gi|218661645|ref|ZP_03517575.1| tRNA/rRNA methyltransferase protein [Rhizobium etli IE4771]
Length = 254
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/244 (33%), Positives = 123/244 (50%), Gaps = 29/244 (11%)
Query: 282 APSTVPKMVGEGL-YGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLK 340
AP+ P +GL YG+ V AAL R+ L V + ++ R + D
Sbjct: 14 APARAPD---QGLSYGLHTVRAALDNPERKKIKLSVTQ----NALARLEID--------- 57
Query: 341 MAENMGISIKETSKHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVA 399
E +GI+ + S H+++ V+G HQG++L+ PL + +++ L + L +
Sbjct: 58 -VETLGIAFEIVSPHEIDKVLGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLV 109
Query: 400 LDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQ 459
LD+VTDP N+GAI+RSA F A V+ ++S SGV++K++SG+LEL+ N+
Sbjct: 110 LDQVTDPHNVGAIMRSAVAFNAGAVITTQRHSPTESGVLAKSASGALELIPYIQITNLAD 169
Query: 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI-- 517
L + G+ +G S PL G LVLGSEG GLR + T L R+
Sbjct: 170 ALGELHKLGFSTIGLD-SEGPAPLEGTFSGDKVALVLGSEGKGLRQKTRETVTALARLDM 228
Query: 518 PGNI 521
PG I
Sbjct: 229 PGAI 232
>gi|297618403|ref|YP_003703562.1| TrmH family RNA methyltransferase [Syntrophothermus lipocalidus DSM
12680]
gi|297146240|gb|ADI02997.1| RNA methyltransferase, TrmH family, group 3 [Syntrophothermus
lipocalidus DSM 12680]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/227 (30%), Positives = 112/227 (49%), Gaps = 12/227 (5%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G+ V AL A R+ + +YV + +KD++ E +L A GI ++
Sbjct: 3 EQIEGINWVSEALKAG-RQIHRIYVDD---------SRKDRR-VESILAHAHKRGIPVES 51
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
K+ L + + QG+V ASP I+++ + + + LD V DPQNLGA
Sbjct: 52 VGKNQLRSMSASGSPQGVVALASPYHYWPIEDILEFTQSRGEQPFLILLDGVEDPQNLGA 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
IIR+A G G+VL +S ++ V +AS+G++E M++ N+++ + + G +
Sbjct: 112 IIRTAECAGVHGIVLPLHHSVKVTPAVGRASAGAVEHMKIALVTNLVRAIEELKQGGLWI 171
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+G + E+ P LV G EG G+R LV C LV IP
Sbjct: 172 VGADAMANHTYF-EVSLAAPLALVFGGEGRGIRRLVREHCDILVSIP 217
>gi|163839175|ref|YP_001623580.1| 23S rRNA methyltransferase [Renibacterium salmoninarum ATCC 33209]
gi|162952651|gb|ABY22166.1| 23S rRNA methyltransferase TrmH, group 3 [Renibacterium
salmoninarum ATCC 33209]
Length = 336
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 116/242 (47%), Gaps = 42/242 (17%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADE---- 391
++VLK+A GI + ET K +L+ + + HQGL L P + ++ + D+
Sbjct: 111 KEVLKLASERGIPLMETHKPELDRMTDDAVHQGLALQIPPYDYPDAIDIAQETVDKFKKG 170
Query: 392 --DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELM 449
+ L VALD +TDP+NLGAIIRS F V++ + S L+ K S+G+ +
Sbjct: 171 YIKNSPLIVALDGITDPRNLGAIIRSVSAFAGQAVIVPERRSVGLTASAWKTSAGAAVRV 230
Query: 450 ELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRP 505
+ N+ + L S G+ VLG G VS A+ + + +P +V+GSEG GL
Sbjct: 231 PVARAGNLNRALESFKGMGYFVLGLDGDGDVSLPALAVAK----EPVCIVVGSEGKGLSR 286
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
LV +C +V IP ID A+ESLN S+A G+ L+
Sbjct: 287 LVRENCDQIVSIP-----------IDS-----------------AMESLNASMAVGITLY 318
Query: 566 HL 567
+
Sbjct: 319 EI 320
>gi|153009269|ref|YP_001370484.1| RNA methyltransferase [Ochrobactrum anthropi ATCC 49188]
gi|151561157|gb|ABS14655.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum anthropi
ATCC 49188]
Length = 286
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/271 (29%), Positives = 129/271 (47%), Gaps = 35/271 (12%)
Query: 264 YQRWNRQE------NSGRTTWKEAAPSTVPKMVGEG---LYGVGPVLAALSAKTREFYAL 314
Y R RQ G++ K PS V EG LYG+ V AA+ R+
Sbjct: 15 YARLRRQHRDQKAVTEGKSPRKPQRPSISAGAVTEGTVRLYGLHTVRAAVENPERKIL-- 72
Query: 315 YVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHDLNMVVGNRP-HQGLVLD 372
R + + G+ ++ + AE++ ++ D++ G+ HQG++++
Sbjct: 73 ------------RMRATRNGFARLEIGEAESLPFPVEIVDPRDIDKETGSEAVHQGVMIE 120
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
A PL K+ EL + L + LD+VTDP N+GAI+RSA FGA ++ +++S
Sbjct: 121 AEPLRARKLSELK-------DSPLLLVLDQVTDPHNVGAIMRSAVAFGAGALITTSRHSP 173
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
+GV++KA+SG+LE++ N+ + + G++ +G S + G
Sbjct: 174 QETGVLAKAASGALEMISHIEVRNLAEAIEELHSLGFQTIGLD-SEGPQEMEATLSGGRI 232
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
LVLG+EG GLR + T L R+ PG I
Sbjct: 233 ALVLGAEGKGLRQKTRETVTALARLDMPGEI 263
>gi|403715410|ref|ZP_10941144.1| putative rRNA methyltransferase [Kineosphaera limosa NBRC 100340]
gi|403210715|dbj|GAB95827.1| putative rRNA methyltransferase [Kineosphaera limosa NBRC 100340]
Length = 320
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 75/235 (31%), Positives = 112/235 (47%), Gaps = 38/235 (16%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+VLK+A + ET + +L+ + HQGL L P LDP + Q
Sbjct: 112 EVLKIAAERAVPTLETPRGELDRLTDGAVHQGLALQVPPYTY-----LDPADLHDPQTPG 166
Query: 396 --LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY 453
L VALD +TDP+NLGAI+RS FG GVV+ + S ++ K S+G+ + +
Sbjct: 167 IPLVVALDGITDPRNLGAILRSVAAFGGQGVVVPERRSVGMTAAAWKTSAGTAARVPVAQ 226
Query: 454 CNNMMQFLVSSAENGWRVLGGSVSSKA-VPLNEIPPGQPTILVLGSEGTGLRPLVERSCT 512
N+++ L G+ ++G + + +P E+ +P ++V+GSEG GL LV +C
Sbjct: 227 ATNLVRALEDFRRAGFFIVGLDMEADIDLPDLELA-TEPLVIVVGSEGKGLSRLVRETCD 285
Query: 513 HLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+V IP AD AVESLN VAAGV L+ +
Sbjct: 286 QIVSIPM---------------AD-------------AVESLNAGVAAGVALYEV 312
>gi|313113889|ref|ZP_07799449.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623792|gb|EFQ07187.1| RNA methyltransferase, TrmH family, group 3 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 310
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/227 (29%), Positives = 114/227 (50%), Gaps = 27/227 (11%)
Query: 341 MAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVAL 400
+A+ G ++K + L ++ G HQG+ AS ++ V + +L + D+ +A V
Sbjct: 102 LAKEAGATVKRVHPNKLRLMTGTESHQGVAAFASEIKYVTVDDLMAAAKDKGEAPFLVLS 161
Query: 401 DEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQF 460
D + DP NLGA++RSA GA G+V+ + A ++ V K+S+G+ E + + N+ +
Sbjct: 162 DGIEDPHNLGAVMRSALLCGAHGIVIPKRGGASVTPTVIKSSAGAAERLPVARVANIGET 221
Query: 461 LVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGN 520
+ E G V + ++ N + P LVLGSEG+G+ LV++ C +VR+
Sbjct: 222 IRRLKEQGVFVYCADMDGVSLRRNNLT--GPIALVLGSEGSGVSQLVKKLCDGVVRL--- 276
Query: 521 IPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
D+ A G V+S NVSVAAG++L+ +
Sbjct: 277 -----------DMAAPGT-----------GVDSYNVSVAAGIILYEI 301
>gi|284047633|ref|YP_003397972.1| TrmH family RNA methyltransferase [Acidaminococcus fermentans DSM
20731]
gi|283951854|gb|ADB46657.1| RNA methyltransferase, TrmH family, group 3 [Acidaminococcus
fermentans DSM 20731]
Length = 250
Score = 99.4 bits (246), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 77/267 (28%), Positives = 128/267 (47%), Gaps = 45/267 (16%)
Query: 309 REFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQG 368
R F + VQEG S ++L++A+ I +++ S+ L+ + HQG
Sbjct: 19 RPFNKVLVQEGSHGGS----------LSEILELAQEQKIPVEKVSREVLDRLADGVRHQG 68
Query: 369 LVLDASPLEMVKIKELDPISA---DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
+ +P V ++LD + A + L + LDE+ DPQN+GA+IR+A G GV+
Sbjct: 69 VAAQGAP---VAFQDLDTVLARVESRGEVPLLLLLDELQDPQNVGALIRTANAAGVHGVL 125
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
L + S PL+ VV+K S+G++E + + N+ Q + + G+ + G + + +
Sbjct: 126 LPQRRSCPLNAVVAKISAGAIEYVPVIQIGNIPQTMKQLKKRGFWIAGADMDGEDQYFDA 185
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQF 545
G P +LV+G+EG GL LV+ +C +VRIP
Sbjct: 186 NLTG-PMVLVVGAEGKGLGRLVKENCDFIVRIP--------------------------- 217
Query: 546 QSFMAVESLNVSVAAGVLLHHLVGHQV 572
V SLN SVA G+LL+ +V ++
Sbjct: 218 -MLGQVSSLNASVAGGILLYDIVRQRI 243
>gi|440740134|ref|ZP_20919631.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas
fluorescens BRIP34879]
gi|440378196|gb|ELQ14825.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas
fluorescens BRIP34879]
Length = 253
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|268610377|ref|ZP_06144104.1| RNA methyltransferase, TrmH family, group 3 [Ruminococcus
flavefaciens FD-1]
Length = 254
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 31/239 (12%)
Query: 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLW 397
+ K+A++ G+ IK+ + L+ + G HQG+ + E V ++++ +S ++
Sbjct: 47 IRKLAKDKGVVIKDAQEKKLSQLSGGASHQGVAAVGACGEYVSVEDILAVSRNKGTKPFI 106
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNM 457
+ DE+ DP NLGAIIR+A GA G+++ + SA L+ V K S+G+ + + +N+
Sbjct: 107 IICDEIEDPHNLGAIIRTAETSGADGIIIPKRRSASLNATVFKTSAGAANYVPVARVSNL 166
Query: 458 MQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI 517
+ ENG + G S + LV+GSEG G+ L+++ C ++++
Sbjct: 167 ASCIDMLKENGVWIYGTDASGTEYTQTDFTG--SCALVIGSEGFGISKLIQKKCDFMIKL 224
Query: 518 PGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNS 576
P G+I+ SLN SVAAG+ ++ ++ Q SNNS
Sbjct: 225 P-------MLGKIN---------------------SLNASVAAGIFMYEIL-RQRSNNS 254
>gi|239832139|ref|ZP_04680468.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
intermedium LMG 3301]
gi|239824406|gb|EEQ95974.1| RNA methyltransferase, TrmH family, group 3 [Ochrobactrum
intermedium LMG 3301]
Length = 303
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 138/288 (47%), Gaps = 43/288 (14%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEG---LYGV 297
DS + + R R D KA TE G++ K PS V EG LYG+
Sbjct: 29 DSHYARLRRQHR-DQKAGTE-------------GKSPRKPQRPSISASAVTEGTVRLYGL 74
Query: 298 GPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKETSKHD 356
V AA+ R + L++ N G+ ++ + AE++ ++ D
Sbjct: 75 HTVRAAVENPERRILRM-------LATRN-------GFARLEIGEAESLPFPVEIVEPRD 120
Query: 357 LNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
++ G+ HQG++++A PL K+ EL + L + LD+VTDP N+GAI+RS
Sbjct: 121 IDKETGSEAVHQGVMIEAEPLRARKLSELK-------DSPLLLVLDQVTDPHNVGAIMRS 173
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A FGA ++ +++S +GV++KA+SG+LEL+ N+ + + G++ +G
Sbjct: 174 AVAFGAGALITTSRHSPQETGVLAKAASGALELISHIEVRNLAEAIEELHSLGFQTIGLD 233
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S + + G LVLG+EG GLR + T L R+ PG I
Sbjct: 234 -SEGPLEMEATLSGGRIALVLGAEGKGLRQKTRETVTALARLDMPGEI 280
>gi|334338882|ref|YP_004543862.1| TrmH family RNA methyltransferase [Desulfotomaculum ruminis DSM
2154]
gi|334090236|gb|AEG58576.1| RNA methyltransferase, TrmH family, group 3 [Desulfotomaculum
ruminis DSM 2154]
Length = 297
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 29/232 (12%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++ +M GI I+ + L+ + PHQG+V A+ + V+++++ + + Q
Sbjct: 91 EITRMVREAGIPIQTVDRAYLDKLQTGVPHQGIVAYAAAKQYVEVEDILSAARSKGQEPF 150
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
V LDE+ DP NLGAI+R+ G GV++ + S L+ V+KAS+G++E + + N
Sbjct: 151 MVMLDEINDPHNLGAILRTCDAAGVHGVIIPQRRSVALTATVAKASAGAVEYVPVARVTN 210
Query: 457 MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVR 516
+ Q + S E G V+G + + G P +LV+G EG GL L++ C LVR
Sbjct: 211 LDQTIRSLKEQGLWVVGAEMDGPDLFWQAKLTG-PLLLVIGGEGKGLGRLLKERCDMLVR 269
Query: 517 IPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+P V SLN SVAA +L++ +V
Sbjct: 270 LP----------------------------MLGQVGSLNASVAAALLVYEVV 293
>gi|312621714|ref|YP_004023327.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kronotskyensis 2002]
gi|312202181|gb|ADQ45508.1| RNA methyltransferase, TrmH family, group 3 [Caldicellulosiruptor
kronotskyensis 2002]
Length = 253
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/226 (30%), Positives = 112/226 (49%), Gaps = 18/226 (7%)
Query: 296 GVGPVLAAL--SAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
G PV AL AK E Y +S S+ +++ K++ + G+ +K
Sbjct: 6 GKNPVKEALKSGAKITEVY-------ISTSAKDKETA------KIIDLCRQSGVVVKFVD 52
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
K ++ + + QG++ A E I ++ + + V LD +TDPQN G+II
Sbjct: 53 KSKIDKMAQTKNPQGVIAIAHEFEYCDIDDILFEAKKSGEEPFLVLLDGITDPQNFGSII 112
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
RSA+ G G+V+ +NS P++ V KAS+G++E M++ N+ + + E G W
Sbjct: 113 RSAHLCGVHGIVIETRNSCPVTPAVEKASAGAVEYMKIARVVNLRRTIEELKEKGIWVFA 172
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ SK P+ E PT +V+GSEG G+ LV+ L++IP
Sbjct: 173 ADANGSK--PVYECDFTIPTCVVIGSEGKGISRLVKEGADFLIKIP 216
>gi|119511316|ref|ZP_01630430.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
gi|119464022|gb|EAW44945.1| RNA methyltransferase TrmH, group 3 [Nodularia spumigena CCY9414]
Length = 323
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/288 (27%), Positives = 135/288 (46%), Gaps = 44/288 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG PVL+AL + R +++ R + D + + +L+ EN G I E
Sbjct: 72 IYGRHPVLSALEGE-RGLNRIWI--------TTRLRYDHRFHHLLLQAKEN-GTVIDEVE 121
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L+ + HQG+ +P + +++ +L A + V + +TDP NLGAII
Sbjct: 122 PKRLDQITDRANHQGIAAQVAPHDYMELSDLI-AQAKSVTDPVIVVAEGITDPHNLGAII 180
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A GA G+V+ + ++ ++ V K ++G+LE + N+ + L E G+ +
Sbjct: 181 RTAEAIGAQGLVIPQRRASGITSTVMKVAAGALENFSVARVVNLSRALEELKEAGFWIY- 239
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEID 531
G+ ++ + PL+ + P +LV+GSEG GL L +RSC LV IP G P
Sbjct: 240 GTATTGSEPLHTVKFSGPIVLVIGSEGEGLSMLTQRSCDVLVSIPLLGKTP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIE 579
SLN SVAAG+ L+ + + N +++
Sbjct: 291 ---------------------SLNASVAAGMALYEIYRQRSLNTLYLD 317
>gi|418060257|ref|ZP_12698177.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
extorquens DSM 13060]
gi|373566185|gb|EHP92194.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
extorquens DSM 13060]
Length = 234
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 51/275 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PV AL+ R F+ L E N + + G E + I +
Sbjct: 2 LYGWHPVSQALANAGRHFHRLLATE------NALARLKEAGIE--------LPIEPEMVR 47
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
++ ++G + HQGL +A + LD + D +L +ALD++TDP N+GAI
Sbjct: 48 PSAIDRLLGPDAVHQGLYAEAE---PLAAPALDAMPDD----ALLLALDQITDPHNVGAI 100
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A FG + +V A++S +GV++K++SG LE + L N+ + L++ E G+ +
Sbjct: 101 VRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRI 160
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G S L+ + P +P +LVLG+EG GLR C LVRI
Sbjct: 161 GLD-SDAGTTLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRI--------------- 204
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
DA G A+ SLNVS AA + L+ L
Sbjct: 205 -DATG------------AIRSLNVSNAAAITLYAL 226
>gi|213693319|ref|YP_002323905.1| TrmH family RNA methyltransferase [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|213524780|gb|ACJ53527.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. infantis ATCC 15697 = JCM 1222]
Length = 333
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+++K+A G+ + E + +++ + + HQG++L P + + EL + + +A
Sbjct: 107 EIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKKAKAME 166
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 167 AANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVS 226
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + L E G+ V+G + P ++VLGSEG+G
Sbjct: 227 AGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSG 286
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP + +VESLN SVAAG+
Sbjct: 287 LGRLVRETCDAIAGIPIS----------------------------SSVESLNASVAAGI 318
Query: 563 LLH 565
L+
Sbjct: 319 SLY 321
>gi|86148225|ref|ZP_01066522.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|218708332|ref|YP_002415953.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Vibrio splendidus
LGP32]
gi|85833995|gb|EAQ52156.1| RNA methyltransferase, TrmH family protein [Vibrio sp. MED222]
gi|218321351|emb|CAV17301.1| 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB [Vibrio
splendidus LGP32]
Length = 246
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 83/281 (29%), Positives = 127/281 (45%), Gaps = 42/281 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++ D+ +L + G+S
Sbjct: 1 MSNEFIYGIHAVKAVLEKDPARFIEAYVLKG--------RQDDRL--LPLLNQLQQFGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ + L+ HQGL+ P + + LD I A +Q L V LD VTDP N
Sbjct: 51 IQQMGRKPLDEKAQGANHQGLIAKVKPAKQLNETHLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ S+PL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDRSSPLTATVSKVACGAAETVPLVRVTNLARTMRALQEQG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQAKLTGPLAVVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G +V SLNVSVA+G+ L V
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAV 240
>gi|109897320|ref|YP_660575.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudoalteromonas
atlantica T6c]
gi|109699601|gb|ABG39521.1| 23S rRNA Gm-2251 2'-O-methyltransferase [Pseudoalteromonas
atlantica T6c]
Length = 246
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 80/283 (28%), Positives = 124/283 (43%), Gaps = 42/283 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E LYG+ + A + + L+V +G +D K ++ A GI+++
Sbjct: 5 EWLYGIHALEAVIEREPERLIELFVLKG----------RDDKPINSIINHARKFGIAVQF 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ V HQG+V A P + +LD I L + LD VTDP NLGA
Sbjct: 55 CQRKTLDDKVNGEQHQGVVAKAKPGKQFNENDLDEIIKKSATPFLLI-LDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WR 470
+R+A G +V+ NS L+ VV K + G+ +L+ L N+ + L + G W
Sbjct: 114 CLRTADAAGIDAIVVPKDNSVALTPVVRKVACGAADLIPLIQVTNLARTLREIKDAGVWV 173
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V G+ + + P LV+G+EG G+R L C L+++P AG
Sbjct: 174 V--GTAGEATQSIYDCKMQGPIALVMGAEGKGMRRLTREHCDELIKLP-------MAG-- 222
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
+V SLNVSVA G+ L+ +V + S
Sbjct: 223 -------------------SVSSLNVSVATGICLYEIVRQRTS 246
>gi|229588085|ref|YP_002870204.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
fluorescens SBW25]
gi|229359951|emb|CAY46805.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
fluorescens SBW25]
Length = 251
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|254419282|ref|ZP_05033006.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
BAL3]
gi|196185459|gb|EDX80435.1| RNA methyltransferase, TrmH family, group 3 [Brevundimonas sp.
BAL3]
Length = 294
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 117/225 (52%), Gaps = 18/225 (8%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L+G PVLAAL+ R G L++ R + ++G ++A I + E
Sbjct: 61 LWGRHPVLAALANPARRGM------GRLLATAERAAEIEQG-----QLAHGHKIEVVEVQ 109
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
M+ HQGL PLE V ++EL E + V LD++TDPQN+GAI
Sbjct: 110 ALT-RMLPAGAVHQGLAFKVQPLEGVSLEELA-----EPAQGVIVMLDQLTDPQNVGAIF 163
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FGA G+V+ +++ L+G ++KA+ G+ E + N+ + L A+ GWR +G
Sbjct: 164 RSALAFGARGIVVQDRHAPALAGALAKAAVGATERLPHARVTNLSRALERLADLGWRAVG 223
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ + L E QPT+LV+GSEG G+R LV C L +IP
Sbjct: 224 LDGTGEQT-LEEALDRQPTVLVMGSEGDGIRRLVAEHCDVLAKIP 267
>gi|395498606|ref|ZP_10430185.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas sp. PAMC
25886]
gi|395799659|ref|ZP_10478939.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas sp. Ag1]
gi|421142854|ref|ZP_15602820.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens
BBc6R8]
gi|395336164|gb|EJF68025.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas sp. Ag1]
gi|404506037|gb|EKA20041.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens
BBc6R8]
Length = 251
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELANQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|354585445|ref|ZP_09004332.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus lactis
154]
gi|353188714|gb|EHB54234.1| RNA methyltransferase, TrmH family, group 3 [Paenibacillus lactis
154]
Length = 249
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 114/233 (48%), Gaps = 28/233 (12%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+ ++ A+ +GI I K L+ + HQG+V +P V++ +L + D+ +
Sbjct: 38 QPIIAEAKKLGIVISHVDKRKLDQMAPGIQHQGVVAQVAPYAYVEVDDLLKAAEDKGEPP 97
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
+ LDE+ DP NLG+I+R+A GA GV+L + SA ++ VSK S+G++E + +
Sbjct: 98 FLLLLDEIEDPHNLGSILRTADCTGAHGVILPKRRSAQITATVSKTSAGAVEYVPVARVT 157
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ Q + E G V+G V + + P +V+G+E G+ L+ C LV
Sbjct: 158 NLGQTIDQLKEMGVWVVGTVVDAVQELYDTDVFEGPVAIVIGNENKGMGRLIREKCDVLV 217
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
++P AG I+ SLN SVAAGV+++ ++
Sbjct: 218 KLP-------MAGTIN---------------------SLNASVAAGVVMYEVL 242
>gi|393719445|ref|ZP_10339372.1| RNA methyltransferase [Sphingomonas echinoides ATCC 14820]
Length = 247
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 68/174 (39%), Positives = 95/174 (54%), Gaps = 6/174 (3%)
Query: 347 ISIKETSKHDL-NMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I I DL +V G+ PHQGLV + PLE + + +L + DQ L V LD+VTD
Sbjct: 54 IPIVYADVTDLARLVPGDAPHQGLVAEVDPLEDIWLGDLLQ-QGEGDQRPLLV-LDQVTD 111
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P N+GAI+RSA F A G+V +++ P SG +++A+SG+LE++ N+ + L A
Sbjct: 112 PHNVGAIMRSAAAFDALGIVTPDRHAPPESGTIARAASGALEIVPWVRVVNLARALEEIA 171
Query: 466 ENG-WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
E G WRV G L + Q LVLG+EG G+R C L R+P
Sbjct: 172 EAGFWRV--GLTGEATQTLTQAMGTQRVALVLGAEGEGMRQNTASHCDELARLP 223
>gi|323342430|ref|ZP_08082662.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|336066767|ref|YP_004561625.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erysipelothrix
rhusiopathiae str. Fujisawa]
gi|322463542|gb|EFY08736.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Erysipelothrix
rhusiopathiae ATCC 19414]
gi|334296713|dbj|BAK32584.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Erysipelothrix
rhusiopathiae str. Fujisawa]
Length = 236
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/238 (29%), Positives = 117/238 (49%), Gaps = 33/238 (13%)
Query: 331 DKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
+K Y++++ +A+ GI ++ K L+ + + HQG+V++ + ++E+ + +
Sbjct: 28 NKGNYQEIVALAKEQGIRVQFVDKFRLDKM-ADGVHQGVVIEIQDYKYHSLQEIIKGAKN 86
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
+L V D++ DP NLGAI+R+ G GVV+ S L+ V+K S+G++ ++
Sbjct: 87 ----NLIVLCDQLEDPHNLGAILRTCDACGVDGVVVGKHRSVGLTSTVAKVSTGAINTVK 142
Query: 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
+ NM++ + E G+ V+ + AV E P +LV+GSEG G+ LV++
Sbjct: 143 VAEATNMVKAIAELKEAGYWVVAAENAVDAVDYTEFNVDMPLVLVVGSEGKGISRLVKKE 202
Query: 511 CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
C L IP GS V SLNVSVA GVLL +V
Sbjct: 203 CDILTTIP-------------------MQGS---------VNSLNVSVATGVLLFDIV 232
>gi|447919685|ref|YP_007400253.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas poae
RE*1-1-14]
gi|445203548|gb|AGE28757.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas poae
RE*1-1-14]
Length = 253
Score = 99.0 bits (245), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|188579486|ref|YP_001922931.1| RNA methyltransferase [Methylobacterium populi BJ001]
gi|179342984|gb|ACB78396.1| RNA methyltransferase, TrmH family, group 3 [Methylobacterium
populi BJ001]
Length = 269
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 131/275 (47%), Gaps = 51/275 (18%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG PV AL+ R F+ L E N + + G E + I +
Sbjct: 37 LYGWHPVSQALANAGRHFHRLLATE------NALARLKEAGIE--------LPIEPELVR 82
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
++ ++G + HQGL +A + LD + D +L +ALD++TDP N+GAI
Sbjct: 83 PSAIDKLLGPDAVHQGLYAEAE---PLAAPALDAMPDD----ALLLALDQITDPHNVGAI 135
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+R+A FG + +V A++S +GV++K++SG LE + L N+ + L++ E G+ +
Sbjct: 136 VRTAAAFGVTAIVTTARHSPNATGVLAKSASGGLEHVPLVIVRNLAEALITLGERGFTRI 195
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G S L+ + P +P +LVLG+EG GLR C LVRI
Sbjct: 196 GLD-SDAGTSLDAVGPRRPAVLVLGAEGKGLRQRTTECCDLLVRI--------------- 239
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
DA G A+ SLNVS AA + L+ L
Sbjct: 240 -DATG------------AIRSLNVSNAAAITLYAL 261
>gi|296136581|ref|YP_003643823.1| TrmH family RNA methyltransferase [Thiomonas intermedia K12]
gi|295796703|gb|ADG31493.1| RNA methyltransferase, TrmH family, group 3 [Thiomonas intermedia
K12]
Length = 242
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 128/278 (46%), Gaps = 47/278 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V A L A +A+YV + ++D + ++ L+ E G+ +K S
Sbjct: 4 LYGFHAVGARLRAAPASVHAVYV---------DASRRDAR-MQQFLRKVEASGVELKTLS 53
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L + G HQG+V L V ++ + + A L +ALD VTDP NLGAI+
Sbjct: 54 AERLTALAGTDRHQGVVAQVDDLPTVH--DVHAVLDAVEGAPLVLALDGVTDPHNLGAIL 111
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R+A G V+ + L+ V++ +SG+ E + N+++ L + G V+G
Sbjct: 112 RTADAAGVHLVIAPKDRAVGLNPTVARVASGAAETVPYLMVTNLVRSLGELQDRGLWVMG 171
Query: 474 GSVSSKAVPLNEIPPG---QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
++ +++ QP +LV+G+EG G+R LV +C L++IP
Sbjct: 172 TDEAAT----DDVYAAKWTQPAVLVMGAEGAGMRRLVRETCDQLLQIP------------ 215
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
AVESLNVSVAAGV L+ V
Sbjct: 216 ----------------MLGAVESLNVSVAAGVCLYEAV 237
>gi|254504591|ref|ZP_05116742.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
DFL-11]
gi|222440662|gb|EEE47341.1| RNA methyltransferase, TrmH family, group 3 [Labrenzia alexandrii
DFL-11]
Length = 275
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 116/231 (50%), Gaps = 25/231 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ V AA + K R+ LY E N + + ++G + + +++
Sbjct: 45 LYGLHTVEAAFANKDRKRLKLYATE------NAKNRLQERGVV--------IDVPVEDKR 90
Query: 354 KHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+L+ MV + HQG++L+A PL + L A L +ALD+VTDP N+GAI
Sbjct: 91 PKELDRMVTKDAVHQGMILEADPLPAYGAEHLK-------GARLILALDQVTDPHNVGAI 143
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA A VV +++ V++K++SG+L++++ NM +F+ E G+ +
Sbjct: 144 LRSAVALDADAVVTTERHAPEEGPVLAKSASGALDMIKHVRVKNMARFITEMKEQGFGCI 203
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
A L + T+LVLGSEG G+R V +C L R+ PG I
Sbjct: 204 ALDSDGHA-SLEDTDFTDKTVLVLGSEGKGVRQGVREACGLLARLDMPGEI 253
>gi|114704462|ref|ZP_01437370.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
HTCC2506]
gi|114539247|gb|EAU42367.1| putative trna/rrna methyltransferase protein [Fulvimarina pelagi
HTCC2506]
Length = 310
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/231 (31%), Positives = 118/231 (51%), Gaps = 25/231 (10%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ V AAL R ++ L ++ N R + + E + I++
Sbjct: 78 LYGLHTVAAALQNPDR------IRHRLLITRNARARLELDDAE--------IDCPIEQVE 123
Query: 354 KHDLNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
DL+ ++G HQG L+ PLE +++ L A+L + LD+VTDP N+GAI
Sbjct: 124 PKDLDRLLGGEAVHQGACLETEPLEPLRLDALG-------DATLLLVLDQVTDPHNVGAI 176
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA F A G++ +++S SGV++KA+SG+LE + N+ + L ++ G+R +
Sbjct: 177 LRSATAFAADGLITTSRHSPRESGVLAKAASGALEHVRQIEVRNLAETLERLSKLGFRTI 236
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G ++ + G+ +VLG+EG GLR +C L R+ PG I
Sbjct: 237 GLDSEGES-DFEQAIEGEKIAVVLGAEGKGLRQKTRATCDVLARLEMPGAI 286
>gi|23335906|ref|ZP_00121137.1| COG0566: rRNA methylases [Bifidobacterium longum DJO10A]
gi|189440335|ref|YP_001955416.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|227547049|ref|ZP_03977098.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. longum
ATCC 55813]
gi|239622892|ref|ZP_04665923.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296455116|ref|YP_003662260.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JDM301]
gi|312133669|ref|YP_004001008.1| spou4 [Bifidobacterium longum subsp. longum BBMN68]
gi|317482327|ref|ZP_07941347.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|322690129|ref|YP_004209863.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
gi|322692082|ref|YP_004221652.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
1217]
gi|384202518|ref|YP_005588265.1| RNA methyltransferase [Bifidobacterium longum subsp. longum KACC
91563]
gi|419848847|ref|ZP_14371933.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 1-6B]
gi|419849537|ref|ZP_14372577.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 35B]
gi|419853070|ref|ZP_14375912.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 2-2B]
gi|419854202|ref|ZP_14376991.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 44B]
gi|189428770|gb|ACD98918.1| rRNA methylase [Bifidobacterium longum DJO10A]
gi|227212466|gb|EEI80355.1| tRNA/rRNA methyltransferase [Bifidobacterium longum subsp. infantis
ATCC 55813]
gi|239514889|gb|EEQ54756.1| tRNA/rRNA methyltransferase protein [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|291517770|emb|CBK71386.1| rRNA methylase, putative, group 3 [Bifidobacterium longum subsp.
longum F8]
gi|296184548|gb|ADH01430.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum JDM301]
gi|311772933|gb|ADQ02421.1| SpoU4 [Bifidobacterium longum subsp. longum BBMN68]
gi|316916207|gb|EFV37609.1| RNA methyltransferase [Bifidobacterium sp. 12_1_47BFAA]
gi|320456938|dbj|BAJ67560.1| RNA methyltransferase [Bifidobacterium longum subsp. longum JCM
1217]
gi|320461465|dbj|BAJ72085.1| RNA methyltransferase [Bifidobacterium longum subsp. infantis 157F]
gi|338755525|gb|AEI98514.1| RNA methyltransferase [Bifidobacterium longum subsp. longum KACC
91563]
gi|386406622|gb|EIJ21623.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 1-6B]
gi|386409041|gb|EIJ23918.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 2-2B]
gi|386411688|gb|EIJ26402.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 35B]
gi|386417896|gb|EIJ32366.1| RNA methyltransferase, TrmH family, group 3 [Bifidobacterium longum
subsp. longum 44B]
Length = 330
Score = 99.0 bits (245), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 72/243 (29%), Positives = 116/243 (47%), Gaps = 42/243 (17%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS- 395
+++K+A G+ + E + +++ + + HQG++L P + + EL + + +A
Sbjct: 104 EIVKIAGMNGLHMLEADRLEMDRIARSGNHQGVILKVDPFQYSSLNELADRAEKKAKAME 163
Query: 396 -------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
L++ALD VTDPQNLGA+IRSA FGA+GV+L + SA ++ K S
Sbjct: 164 AANSAAARIAARPLFIALDGVTDPQNLGAVIRSAAAFGANGVILPERRSASVNAAAWKVS 223
Query: 443 SGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTG 502
+G+ M + N+ + L E G+ V+G + P ++VLGSEG+G
Sbjct: 224 AGAAAHMPVARVVNLTKALEGLKERGYYVVGLDGGGDKLVGETGFESDPLVVVLGSEGSG 283
Query: 503 LRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562
L LV +C + IP + +VESLN SVAAG+
Sbjct: 284 LGRLVRETCDAIAGIPIS----------------------------SSVESLNASVAAGI 315
Query: 563 LLH 565
L+
Sbjct: 316 SLY 318
>gi|388470872|ref|ZP_10145081.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pseudomonas
synxantha BG33R]
gi|388007569|gb|EIK68835.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pseudomonas
synxantha BG33R]
Length = 251
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|338732900|ref|YP_004671373.1| putative TrmH family tRNA/rRNA methyltransferase [Simkania
negevensis Z]
gi|336482283|emb|CCB88882.1| putative TrmH family tRNA/rRNA methyltransferase [Simkania
negevensis Z]
Length = 236
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 110/234 (47%), Gaps = 31/234 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQAS 395
+ VLK A+ I I+ K L +V + HQG+V + L EL P + S
Sbjct: 34 DPVLKKAKGFNIPIQFVPKARLTAMVNSESHQGVV---AKLRERTYPELRPFLRTSKEKS 90
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L + D +TDPQN GAI+R+A FG GVV S ++ VV+KAS G+ EL+ L +
Sbjct: 91 LILMCDGITDPQNFGAILRAAECFGVDGVVFSKNRSVEITPVVTKASVGASELVPLLRVS 150
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + + + G+ + V + ++ T+L+LG+EG G++PL+++ V
Sbjct: 151 NLAETMNQFQKAGFTAIVADVGEHSKSIDTFTFPDKTLLILGAEGRGVQPLLKKKADCCV 210
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569
IP G+ID SLNVS AA +LL G
Sbjct: 211 EIP-------LKGQID---------------------SLNVSQAASILLFKARG 236
>gi|121281880|gb|ABM53513.1| putative RNA methyltransferase TrmH [uncultured bacterium CBNPD1
BAC clone 67]
Length = 319
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 81/128 (63%), Gaps = 3/128 (2%)
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
+ +ALD+VTDP N+GAI+RSA F GV++ ++S ++GV++KA+SG+LE + +
Sbjct: 137 IILALDQVTDPHNVGAILRSAAAFDVGGVIVTHRHSPEITGVLAKAASGALEHVPMAGVQ 196
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLV 515
N+ + L + + G+ V+G S + ++P P +LVLG+EG GLRP C+HL
Sbjct: 197 NLARALTTLKDEGFAVIGLD-SEAPEKMGDLPLKLPIVLVLGAEGRGLRPSTRELCSHLA 255
Query: 516 R--IPGNI 521
R +PG I
Sbjct: 256 RLELPGAI 263
>gi|449128545|ref|ZP_21764791.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
SP33]
gi|448940953|gb|EMB21857.1| RNA methyltransferase, TrmH family, group 3 [Treponema denticola
SP33]
Length = 258
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 74/240 (30%), Positives = 117/240 (48%), Gaps = 39/240 (16%)
Query: 336 EKVLKMAENMGISIKETSKHDLNMVVGNRP-----HQGLVLDASPLEMVK---IKELDPI 387
+K+L+ A + + I++ L+ + P H+G+VL K I E I
Sbjct: 44 KKILEAARKLNLKIEKKDNQFLDSLTKTLPEQLRDHRGIVLVTEAENQKKGMSIDEFFAI 103
Query: 388 SADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447
A++D ++ V LD VTDP N G+IIRSA FG G+++ SA ++SK S+G+L
Sbjct: 104 LAEKD-STFVVILDSVTDPHNTGSIIRSADQFGIDGIIVPENKSAGGFEIISKVSAGALA 162
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLV 507
+ N+++ + + G+ + G K +P P + T L++GSEG G+ LV
Sbjct: 163 WVPFVEVTNLVRTVERLKKEGFWIYGADAGGKPLPDLTFP--KKTGLIMGSEGKGMSRLV 220
Query: 508 ERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
E +C +V IP T G++D SLNVSVAAG+LL+ +
Sbjct: 221 EETCDEIVSIP-------TKGKLD---------------------SLNVSVAAGILLYEI 252
>gi|298491203|ref|YP_003721380.1| TrmA family RNA methyltransferase ['Nostoc azollae' 0708]
gi|298233121|gb|ADI64257.1| RNA methyltransferase, TrmH family, group 3 ['Nostoc azollae' 0708]
Length = 323
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/296 (27%), Positives = 138/296 (46%), Gaps = 46/296 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLS-LSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
+YG PVL+AL Q GL+ L R + D + + +L+ +N G I E
Sbjct: 69 IYGRHPVLSALEN----------QRGLNRLWITARLRYDPRFHHLILQAKDN-GTVIDEV 117
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
L+ + HQG+ +P +++++L A + V D +TDP NLGAI
Sbjct: 118 EPKRLDQITDGANHQGIAAQIAPYAYMELEDLI-TQAKSVTDPVIVVADGITDPHNLGAI 176
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
IR+A G+ G+V+ + ++ ++ V K ++G+LE + N+ + L E G+ +
Sbjct: 177 IRTAEAIGSQGLVIPQRRASGITSTVVKVAAGALENFPVARVINLSRALEQLKEAGYWIY 236
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP--GNIPVDVTAGEI 530
G+ ++ + P++ + T+LV+GSEG GL L +RSC LV IP G P
Sbjct: 237 -GTAAAGSEPIHTVKFSGSTVLVIGSEGDGLSMLTQRSCDILVSIPLQGKTP-------- 287
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNNSHIEDSSTATV 586
SLN SVAAG+ L+ + + N +++ T ++
Sbjct: 288 ----------------------SLNASVAAGMALYEIYRQRSLNTLYLDKLRTISL 321
>gi|408484131|ref|ZP_11190350.1| 23S rRNA (guanosine-2'-O-)-methyltransferase [Pseudomonas sp. R81]
Length = 251
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|358388668|gb|EHK26261.1| hypothetical protein TRIVIDRAFT_36346 [Trichoderma virens Gv29-8]
Length = 588
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 139/329 (42%), Gaps = 90/329 (27%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AAL R+ Y L++ G +KD K + ++AE + I
Sbjct: 258 LYGKSVVKAALEQGRRKLYKLFIYGG-------ENRKDSKDNAVITRLAERRRVPITIIP 310
Query: 354 KHD---LNMVVGNRPHQGLVLDASPLEMVKIK----------------ELDPISADEDQA 394
D ++ + RPH G VL+ SPL + +K ELD S +E+
Sbjct: 311 NEDQRLMDKMSMGRPHNGFVLETSPLPRLPVKSLGRLEETLGKLGFHVELDHQSKEEEDI 370
Query: 395 S----------------LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVV 438
+ + L+E+ DP NLG I+R+A + G V + ++S+ L+ VV
Sbjct: 371 NGHDTFIPRKNNNAPKPFVLLLNEILDPGNLGGILRTASYLGVDAVGITNRSSSTLTPVV 430
Query: 439 SKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS---------------VSSKAV-- 481
K+++G++E + + ++ + F+ S + GW+ +S+ V
Sbjct: 431 LKSAAGAVEEITIFSVDSPVSFIEESRKAGWKTYAAVAPPDPKLAQRHGDKFISTATVEA 490
Query: 482 --PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNH 539
PLN P+ILVLG+EG GL ++ + + + +P
Sbjct: 491 EQPLN----SHPSILVLGNEGHGLSKPIKVAADYELSVP--------------------- 525
Query: 540 GSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
F V+SLNVSVAAG+L H V
Sbjct: 526 ----YFVQNSCVDSLNVSVAAGLLCHAFV 550
>gi|374313708|ref|YP_005060138.1| TrmH family RNA methyltransferase [Granulicella mallensis MP5ACTX8]
gi|358755718|gb|AEU39108.1| RNA methyltransferase, TrmH family, group 3 [Granulicella mallensis
MP5ACTX8]
Length = 267
Score = 98.6 bits (244), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 129/273 (47%), Gaps = 38/273 (13%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG+ PV A+ A R+ + V + R+ + + VL + GI + S
Sbjct: 4 LYGLHPVEEAIRAGMRQLDHVSV-------AREREARRDARLDAVLDLCRAAGIRVNTES 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L HQG+V + + +++L ++ALD V DP NLGA++
Sbjct: 57 RDQLTRHAKTDAHQGIVAFLRERKFLALEDLLNAPPGPTGFRFFLALDGVEDPHNLGALL 116
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA G GV++ + SAPLS V+K+S+G+ E + + N+ + L + ++ ++G
Sbjct: 117 RSADGSGIDGVIVPERRSAPLSATVAKSSAGASEHVRIAQVVNITRALETMKKHNVWIVG 176
Query: 474 GSVSSKAVP-LNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
+ + P + Q LVLGSEG+GL LV+R+C HL+RIP AG
Sbjct: 177 --LDERGTPDYTDFDFRQDCCLVLGSEGSGLHELVKRTCDHLLRIP-------MAG---- 223
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
+V SLNVSVA V+++
Sbjct: 224 -----------------SVSSLNVSVAGAVVMY 239
>gi|340029104|ref|ZP_08665167.1| RNA methyltransferase [Paracoccus sp. TRP]
Length = 265
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 87/156 (55%), Gaps = 7/156 (4%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQG L+ PL K+++L + L VALD VTDP N+GAI+RSA FGA V+
Sbjct: 90 HQGAALEVRPLAWGKLEDL---ALSGPGRPLMVALDRVTDPHNVGAILRSAEVFGARAVI 146
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG-GSVSSKAVP-- 482
A++SAP +G ++K +SG+LE N+ L+ G+ VLG + +P
Sbjct: 147 APARHSAPETGALAKTASGALERQPYLRVTNLADALIELKAMGYTVLGLDGTGQETLPET 206
Query: 483 LNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
L + G+ LVLG+EG GLR +C H++RIP
Sbjct: 207 LRAL-SGRAICLVLGAEGPGLRERTRETCDHILRIP 241
>gi|395647937|ref|ZP_10435787.1| 23s rRNA (guanosine-2'-o-)-methyltransferase [Pseudomonas
extremaustralis 14-3 substr. 14-3b]
Length = 252
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELANANKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|146340002|ref|YP_001205050.1| rRNA methylase 23S rRNA (guanosine-2'-O-)-methyltransferase
rlmB-like [Bradyrhizobium sp. ORS 278]
gi|146192808|emb|CAL76813.1| putative rRNA methylase; putative 23S rRNA
(guanosine-2'-O-)-methyltransferase rlmB-like
[Bradyrhizobium sp. ORS 278]
Length = 297
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/162 (37%), Positives = 89/162 (54%), Gaps = 18/162 (11%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I L P + + LD++TDP N+GAI+RSA F +V
Sbjct: 123 HQGLLAEADPLPSPDIDTLAP-------EGMILVLDQITDPHNVGAILRSAAAFDVKAIV 175
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG----GSVSSKAV 481
A++S +GV++K++SG+LEL+ + N+ + L E G++ +G G AV
Sbjct: 176 TTARHSPEATGVLAKSASGALELVPMITVQNLARALTRLNERGFQTVGLDSAGDTDIAAV 235
Query: 482 PLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
L QP LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 236 TLR-----QPLALVLGAEGKGLRQLTRETCSAVARLDMPGAI 272
>gi|398823818|ref|ZP_10582172.1| rRNA methylase, putative, group 3 [Bradyrhizobium sp. YR681]
gi|398225614|gb|EJN11882.1| rRNA methylase, putative, group 3 [Bradyrhizobium sp. YR681]
Length = 276
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 94/158 (59%), Gaps = 10/158 (6%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQGL+ +A PL I++L Q + + LD++TDP N+GAI+RSA F +V
Sbjct: 102 HQGLLAEADPLPSPDIEDLA-------QDGMVLVLDQITDPHNVGAILRSAAAFAVKAIV 154
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
A++S +GV++KA+SG+LEL+ + N+ + L + E G++ +G S + L++
Sbjct: 155 TTARHSPEATGVLAKAASGALELVPMVTVQNLARALTTLNELGFQTVGLD-SEGSEDLSD 213
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
+ +P LVLG+EG GLR L +C+ + R+ PG I
Sbjct: 214 VTLREPLALVLGAEGKGLRQLTRETCSVVARLDMPGEI 251
>gi|383782902|ref|YP_005467469.1| putative tRNA/rRNA methyltransferase [Actinoplanes missouriensis
431]
gi|381376135|dbj|BAL92953.1| putative tRNA/rRNA methyltransferase [Actinoplanes missouriensis
431]
Length = 374
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 82/278 (29%), Positives = 126/278 (45%), Gaps = 43/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E L G PV+ AL A ALYV +G+ + ++++ A + GI I E
Sbjct: 132 ELLLGRNPVVEALRALV-PATALYVAQGIDIDDR---------VTEIVRTAGDRGIPILE 181
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
S+++L+ + G HQG+ L P +L +A E A L VALD +TDP+N+GA
Sbjct: 182 ISRNELDRMTGGVLHQGIGLQVPPFAYEDFDDLV-AAALEQTAPLLVALDGITDPRNVGA 240
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+IRS FG GV + + +A ++ + S+G+ + + N+ + + ++ + G+
Sbjct: 241 VIRSVAAFGGHGVFMTERRAAGITATAWRTSAGAAARVPVSQVVNLTRAIKAAQKAGFTA 300
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + P I+V+GSEG GL LV +C V IP
Sbjct: 301 IGLDADGETDLYQLEAAIGPLIVVVGSEGRGLSRLVGETCDLRVSIP------------- 347
Query: 532 DVDADGNHGSAEQFQSFMA--VESLNVSVAAGVLLHHL 567
MA VESLN SVAA V L +
Sbjct: 348 -----------------MASEVESLNASVAAAVTLAEV 368
>gi|222148346|ref|YP_002549303.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
gi|221735334|gb|ACM36297.1| tRNA/rRNA metyltransferase [Agrobacterium vitis S4]
Length = 293
Score = 98.6 bits (244), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 86/284 (30%), Positives = 135/284 (47%), Gaps = 30/284 (10%)
Query: 241 DSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPV 300
DS + R R + R E P Q R++++ T AP V LYG+ V
Sbjct: 13 DSHYATLRRQVRDAKRERGEIPTPQPQKRRKSNADWTPPPIAPDQV------FLYGLHTV 66
Query: 301 LAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360
AAL+ R+ L SL+ N + + + + + ++ + DL+
Sbjct: 67 RAALNNPERKPIKL------SLTQNALVRLE-------IGPVDALPFPVEIVTPQDLDKH 113
Query: 361 VGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFF 419
+G HQG++L+ PL +++ L ++ L + LD+VTDP N+GAI+R+A F
Sbjct: 114 LGPEAIHQGVMLETRPLPPRRLEALK-------ESPLLLVLDQVTDPHNVGAIMRTAVAF 166
Query: 420 GASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK 479
GA V+ ++S SGV++K++SG+LEL+ N+ + L + G+ +G S
Sbjct: 167 GAGAVITTMRHSPTESGVLAKSASGALELIPYIQITNLAEALGELHKLGFVSIGLD-SEG 225
Query: 480 AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
PL E G LVLGSEG GLR + L R+ PG I
Sbjct: 226 PRPLEETFSGDKLALVLGSEGKGLRQKTRDTVNALARLDMPGEI 269
>gi|312958662|ref|ZP_07773182.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
gi|311287205|gb|EFQ65766.1| RNA methyltransferase TrmH, group 3 [Pseudomonas fluorescens WH6]
Length = 251
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G +
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWI 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|333908797|ref|YP_004482383.1| TrmH family RNA methyltransferase [Marinomonas posidonica
IVIA-Po-181]
gi|333478803|gb|AEF55464.1| RNA methyltransferase, TrmH family, group 3 [Marinomonas posidonica
IVIA-Po-181]
Length = 255
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 79/281 (28%), Positives = 124/281 (44%), Gaps = 43/281 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ V ALS + + QEG +D K ++++ + + +
Sbjct: 5 EWIYGIHAVENALSQQAERIKEVRFQEG----------RDDKKTQRLMTLCKTNKVRYSL 54
Query: 352 TSKHDLNMVVGNRP----HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQ 407
+ DL+ + HQG+V + + +L D+ L + LD VTDP
Sbjct: 55 VPRRDLDQLFTKTKERVVHQGVVAYTTMTKAGNEADLHAYIEGLDETPLVIILDGVTDPH 114
Query: 408 NLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAEN 467
NLGA +RSA GA V++ NSAPL+ VSK + G+ E M + N+ + + +
Sbjct: 115 NLGACLRSADAAGAHAVIMPKDNSAPLNATVSKVACGAAESMPVYAVTNLARTMKKLQDQ 174
Query: 468 GWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
G + G + + + E PT +V+G+EG G+R L C +LV++P A
Sbjct: 175 GIWIFGTAGEATGT-IYEQDLTIPTAIVMGAEGEGMRRLTREQCDYLVKLP-------MA 226
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
G V SLNVSVA GV L+ +V
Sbjct: 227 G---------------------VVSSLNVSVATGVCLYEVV 246
>gi|222085654|ref|YP_002544184.1| tRNA/rRNA methyltransferase [Agrobacterium radiobacter K84]
gi|398377936|ref|ZP_10536105.1| rRNA methylase, putative, group 3 [Rhizobium sp. AP16]
gi|221723102|gb|ACM26258.1| tRNA/rRNA methyltransferase protein [Agrobacterium radiobacter K84]
gi|397725863|gb|EJK86307.1| rRNA methylase, putative, group 3 [Rhizobium sp. AP16]
Length = 302
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 87/288 (30%), Positives = 136/288 (47%), Gaps = 29/288 (10%)
Query: 237 EAVSDSKWNKRRNSFRRDVKARTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYG 296
++ D+ + R + R + R E P R+ G WK P+ P V LYG
Sbjct: 19 KSAKDTHYATLRRAHRDAKRERGEIPTPVPQKRKR-PGADDWK--PPALAPDQVY--LYG 73
Query: 297 VGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHD 356
+ V AAL+ R+ L S + N + + + + +GI + S D
Sbjct: 74 LHTVRAALANPERKNIKL------STTQNALVRLE-------IGPVDALGIPFEIVSPQD 120
Query: 357 LNMVVGNRP-HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415
++ V+G HQG++L+ PL + +++ L + L + LD+VTDP N+GAI+RS
Sbjct: 121 IDKVLGPEAIHQGVMLETRPLPVRRLEALK-------DSPLLLVLDQVTDPHNVGAIMRS 173
Query: 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475
A F A+ V+ ++S SGV++K++SG+LEL+ N+ L G+ +G
Sbjct: 174 AVAFDAAAVITTQRHSPTESGVLAKSASGALELIPYIQITNLADALGELHRLGFVSIGLD 233
Query: 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
S PL G+ LVLGSEG GLR + L R+ PG I
Sbjct: 234 -SEGPAPLEGTFSGEKVALVLGSEGKGLRQKTRETVNALARLDMPGAI 280
>gi|91977697|ref|YP_570356.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB5]
gi|91684153|gb|ABE40455.1| RNA methyltransferase TrmH, group 3 [Rhodopseudomonas palustris
BisB5]
Length = 273
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 118/235 (50%), Gaps = 33/235 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
LYG V AAL+ R L++ E + RK D+ KV G
Sbjct: 41 LYGWHTVTAALANPERRIRKLWLTENAA-----RKLADENIDTKVTPEIVRPG------- 88
Query: 354 KHDLNMVVG-NRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+++ +G + HQG++ +A PL+ +I L Q + + LD++TDP N+GAI
Sbjct: 89 --EIDQRLGPDAVHQGMLAEADPLDSPRIDTLP-------QDGIVLVLDQITDPHNVGAI 139
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472
+RSA F +V A++S +GV++K++SG+LEL+ L N+ + L + G+ +
Sbjct: 140 LRSAAAFAVKAIVTTARHSPEATGVLAKSASGALELVPLVLVGNLSRALAELNDRGFLTV 199
Query: 473 G----GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
G GS AV L+E P LVLG+EG GLR L +C + R+ PG I
Sbjct: 200 GLDSEGSADLAAVELHE-----PLALVLGAEGKGLRQLTRETCNVVARLDMPGAI 249
>gi|429220165|ref|YP_007181809.1| rRNA methylase [Deinococcus peraridilitoris DSM 19664]
gi|429131028|gb|AFZ68043.1| rRNA methylase, putative, group 3 [Deinococcus peraridilitoris DSM
19664]
Length = 239
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 88/275 (32%), Positives = 129/275 (46%), Gaps = 49/275 (17%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK-VLKMAENMGISIKET 352
LYG PVL AL VQE L G EK L+ + I +K
Sbjct: 3 LYGRNPVLEALRGG-------LVQELLV----------AHGVEKSFLQELQAFDIRLKFA 45
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ +L+ + G HQG++ + L + ++ + + L V LD VTDP+N GAI
Sbjct: 46 PRIELDQLAGTTQHQGVIAEVEDLAWASVDDMLDRAEARGETLLLVLLDGVTDPRNFGAI 105
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV 471
IRSA GA GVV+ + SAPLS V+KA++G+ + + N+ +F+ + E+G W
Sbjct: 106 IRSAEVLGAHGVVVEERRSAPLSATVAKAAAGATSFLPVAQVKNLPRFIDALKEDGVW-- 163
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+ G+ A L ++ + LV+G+EG GLR LV C LV IP G+
Sbjct: 164 IYGAAGEAARDLRQLDYDRRLALVIGAEGEGLRRLVREKCDELVSIP-------VRGQ-- 214
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
V+SLN SVAA +L++H
Sbjct: 215 -------------------VQSLNASVAASILIYH 230
>gi|423689624|ref|ZP_17664144.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pseudomonas
fluorescens SS101]
gi|387997475|gb|EIK58804.1| 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB [Pseudomonas
fluorescens SS101]
Length = 253
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + + ++++A ++I +
Sbjct: 4 EKIYGVHAVEALLRHHPKRVKQVWLAEG----------RSEPRVQALVELATQNKVAIGQ 53
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ ++++ V HQG+V D SP ++ LD + + A L + LD VTDP NLGA
Sbjct: 54 AERREMDVWV-EGVHQGVVADVSPSQVWGEAMLDELLDRTEGAPLLLVLDGVTDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+RSA GA V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 113 CLRSADAAGALAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ ++ G PTIL++G+EG G+R L C +LV +P AG
Sbjct: 173 VGTAGEAEVSIYDQDLTG-PTILIMGAEGKGMRRLTREHCDYLVHLP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 222 ------------------SVSSLNVSVATGVCL 236
>gi|167645570|ref|YP_001683233.1| RNA methyltransferase [Caulobacter sp. K31]
gi|167348000|gb|ABZ70735.1| RNA methyltransferase, TrmH family, group 3 [Caulobacter sp. K31]
Length = 278
Score = 98.6 bits (244), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 92/158 (58%), Gaps = 8/158 (5%)
Query: 366 HQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
HQG+ L E + + +L + L V LD++TDPQN+GAI RSA FGA GV+
Sbjct: 100 HQGVALKIDEPEALSVYDLGTPAQ-----GLLVMLDQITDPQNIGAIFRSAAAFGARGVI 154
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE 485
L +++ L+GV++K + G+++ + N+ + L A+ GWR + + ++ L++
Sbjct: 155 LQDRHAPALTGVLAKTAVGAVDKIAYARVVNLSRALEELADLGWRAVALAGEAQQT-LDQ 213
Query: 486 IPPGQPTILVLGSEGTGLRPLVERSCTHLVRI--PGNI 521
+ G+PT+LVLGSEG G+R LV C + +I PG
Sbjct: 214 VLDGRPTVLVLGSEGEGVRRLVSEHCDAMGKIAMPGGF 251
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.312 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,661,384,409
Number of Sequences: 23463169
Number of extensions: 356450149
Number of successful extensions: 916535
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4333
Number of HSP's successfully gapped in prelim test: 3709
Number of HSP's that attempted gapping in prelim test: 898380
Number of HSP's gapped (non-prelim): 11871
length of query: 587
length of database: 8,064,228,071
effective HSP length: 148
effective length of query: 439
effective length of database: 8,886,646,355
effective search space: 3901237749845
effective search space used: 3901237749845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 80 (35.4 bits)