BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007847
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GZ0|A Chain A, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|B Chain B, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|C Chain C, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|D Chain D, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|E Chain E, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|F Chain F, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|G Chain G, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
pdb|1GZ0|H Chain H, 23s Ribosomal Rna G2251 2'o-Methyltransferase Rlmb
Length = 253
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 115/278 (41%), Gaps = 42/278 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ V A L F +++ +G ++DK+ ++ E+ G+ I+
Sbjct: 13 EXIYGIHAVQALLERAPERFQEVFILKG---------REDKR-LLPLIHALESQGVVIQL 62
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ L+ HQG++ P + +L + A DQ L + LD VTDP NLGA
Sbjct: 63 ANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIASLDQPFLLI-LDGVTDPHNLGA 121
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL-VSSAENGWR 470
+RSA G V++ SA L+ K + G+ E + L N+ + EN W
Sbjct: 122 CLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLARTXRXLQEENIWI 181
Query: 471 VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530
V G+ L + LV G+EG G R L C L+ IP AG
Sbjct: 182 V--GTAGEADHTLYQSKXTGRLALVXGAEGEGXRRLTREHCDELISIP-------XAG-- 230
Query: 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA G+ L V
Sbjct: 231 -------------------SVSSLNVSVATGICLFEAV 249
>pdb|2I6D|A Chain A, The Structure Of A Putative Rna Methyltransferase Of The
Trmh Family From Porphyromonas Gingivalis
Length = 257
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 63/126 (50%), Gaps = 1/126 (0%)
Query: 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCN 455
L + LD V DP N+G I+R+A +FG V L ++ S V +AS G+L ++
Sbjct: 104 LTLLLDGVQDPGNVGTILRTADWFGIRHVWLGTGSADVFSPKVVQASXGALARVQPTPLK 163
Query: 456 NMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPP-GQPTILVLGSEGTGLRPLVERSCTHL 514
N + L G V G + +++ +P +P ILVLGSEG G+ P V T
Sbjct: 164 NTVDTLAYFRRQGIPVYGAFLDGQSLYEAPLPNFTEPAILVLGSEGRGISPEVAAEITDR 223
Query: 515 VRIPGN 520
+ IP +
Sbjct: 224 LTIPAS 229
>pdb|1ZJR|A Chain A, Crystal Structure Of A. Aeolicus TrmhSPOU TRNA MODIFYING
ENZYME
Length = 211
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 80/185 (43%), Gaps = 45/185 (24%)
Query: 390 DEDQASLWVALDEVTDPQNLGAIIRSA--------YFFGASGVVLCAKNSAPLSGVVSKA 441
++ Q L V D V + N AI+R+ Y++ A G K + G+
Sbjct: 20 EKRQKDLIVFADNVKNEHNFSAIVRTCDAVGVLYLYYYHAEG-----KKAKINEGI---- 70
Query: 442 SSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGT 501
+ GS + + + +N +Q L+ G++++ +S ++V E+ +PT+LV+G+E
Sbjct: 71 TQGSHKWVFIEKVDNPVQKLLEFKNRGFQIVATWLSKESVNFREVDYTKPTVLVVGNELQ 130
Query: 502 GLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAG 561
G+ P + + IP +G A +SLNVSVA G
Sbjct: 131 GVSPEIVEIADKKIVIPM-------------------YGMA---------QSLNVSVATG 162
Query: 562 VLLHH 566
++L+
Sbjct: 163 IILYE 167
>pdb|1X7P|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
pdb|1X7P|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes In Complex With The
Cofactor Adomet
Length = 287
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 18/172 (10%)
Query: 356 DLNMVVGNRPHQGLVLDASPLEMVKIKE-----LDPISADEDQASLWVALDEVTDPQNLG 410
DL M +G + + +P E+V + E LD I ED L V D T P N+G
Sbjct: 91 DLLMELGEK-------NEAPPEVVAVVEMPADDLDRIPVRED--FLGVLFDRPTSPGNIG 141
Query: 411 AIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSL-ELMELRYCN--NMMQFLVSSAEN 467
+IIRSA GA G+++ + ++S+GSL L +R + +M ++ +
Sbjct: 142 SIIRSADALGAHGLIVAGHAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVMDWVEARRAA 201
Query: 468 GWR-VLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
G VL G+ + + QPT+L++G+E GL C + V IP
Sbjct: 202 GTPIVLVGTDEHGDCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIP 253
>pdb|1X7O|A Chain A, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes
pdb|1X7O|B Chain B, Crystal Structure Of The Spou Methyltransferase Avirb From
Streptomyces Viridochromogenes
Length = 287
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 69/165 (41%), Gaps = 33/165 (20%)
Query: 374 SPLEMVKIKE-----LDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA 428
+P E+V + E LD I ED L V D T P N+G+IIRSA GA G+++
Sbjct: 102 APPEVVAVVEXPADDLDRIPVRED--FLGVLFDRPTSPGNIGSIIRSADALGAHGLIVAG 159
Query: 429 KNSAPLSGVVSKASSGSL---------------ELMELRYCNNMMQFLVSSAENGWRVLG 473
+ ++S+GSL + +E R LV + E+G
Sbjct: 160 HAADVYDPKSVRSSTGSLFSLPAVRVPSPGEVXDWVEARRAAGTPIVLVGTDEHG----- 214
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518
+ + QPT+L++G+E GL C + V IP
Sbjct: 215 ------DCDVFDFDFTQPTLLLIGNETAGLSNAWRTLCDYTVSIP 253
>pdb|1V2X|A Chain A, Trmh
Length = 194
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 34/174 (19%)
Query: 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGV--VSKASSGSLELME 450
Q L V L+ V P NL AI+R+ G VL A P GV ++ S GS + +
Sbjct: 20 QPDLTVLLENVHKPHNLSAILRTCDAVG----VLEAHAVNPTGGVPTFNETSGGSHKWVY 75
Query: 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
LR ++ + E G+ V ++ A E+ +PT ++ G+E G+
Sbjct: 76 LRVHPDLHEAFRFLKERGFTVYATALREDARDFREVDYTKPTAVLFGAEKWGVSEEALAL 135
Query: 511 CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
++IP V+SLNVSVAA V+L
Sbjct: 136 ADGAIKIP----------------------------MLGMVQSLNVSVAAAVIL 161
>pdb|2HA8|A Chain A, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
pdb|2HA8|B Chain B, Methyltransferase Domain Of Human Tar (Hiv-1) Rna Binding
Protein 1
Length = 184
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 30/127 (23%), Positives = 62/127 (48%), Gaps = 3/127 (2%)
Query: 394 ASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN--SAPLSGVVSKASSGSLELMEL 451
+ L V + P NLG + R+ FGAS +V+ + S +S ++ L L+E+
Sbjct: 25 SRLIVVASLIDKPTNLGGLCRTCEVFGASVLVVGSLQCISDKQFQHLSVSAEQWLPLVEV 84
Query: 452 RYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSC 511
+ ++ +L G+ ++G ++K++ L + + ++L+LG+E G+ + +
Sbjct: 85 K-PPQLIDYLQQKKTEGYTIIGVEQTAKSLDLTQYCFPEKSLLLLGNEREGIPANLIQQL 143
Query: 512 THLVRIP 518
V IP
Sbjct: 144 DVCVEIP 150
>pdb|3GYQ|A Chain A, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
pdb|3GYQ|B Chain B, Structure Of The Thiostrepton-Resistance Methyltransferase
S-Adenosyl-L-Methionine Complex
Length = 272
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 75/189 (39%), Gaps = 50/189 (26%)
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG-VVSKASSGSLELMELRYC-- 454
V LD V N+GAI+R++ GASG++L + ++ + +AS G + + +
Sbjct: 122 VVLDGVKIVGNIGAIVRTSLALGASGIILVDSDITSIADRRLQRASRGYVFSLPVVLSGR 181
Query: 455 --------NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPL 506
++ MQ + A+ G +S K + N P + +L GSE G L
Sbjct: 182 EEAIAFIRDSGMQLMTLKAD-------GDISVKELGDN---PDRLALL-FGSEKGGPSDL 230
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
E + + V IP ESLNVSV+ G+ LH
Sbjct: 231 FEEASSASVSIP----------------------------MMSQTESLNVSVSLGIALHE 262
Query: 567 LVGHQVSNN 575
+ ++ N
Sbjct: 263 RIDRNLAAN 271
>pdb|3NK6|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
pdb|3NK6|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
pdb|3NK7|A Chain A, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
pdb|3NK7|B Chain B, Structure Of The Nosiheptide-Resistance Methyltransferase
S-Adenosyl- L-Methionine Complex
Length = 277
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 70/182 (38%), Gaps = 54/182 (29%)
Query: 398 VALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG-VVSKASSG---SLELME--- 450
V LD V N+GAI+R++ GA+G+VL + A ++ + +AS G SL ++
Sbjct: 122 VVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVVLADR 181
Query: 451 ------LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLR 504
LR + + L + + G + LG A LV GSE G
Sbjct: 182 EEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMA-------------LVFGSEKGGPS 228
Query: 505 PLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
L + + V IP + ESLNVSV+ G+ L
Sbjct: 229 GLFQEASAGTVSIP----------------------------MLSSTESLNVSVSVGIAL 260
Query: 565 HH 566
H
Sbjct: 261 HE 262
>pdb|3AV4|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1
pdb|3AV5|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adohcy
pdb|3AV6|A Chain A, Crystal Structure Of Mouse Dna Methyltransferase 1 With
Adomet
Length = 1330
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 377 EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG 436
EM+++ + + D+ L++A G ++ A++F A + S PL
Sbjct: 468 EMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLEL 527
Query: 437 VVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVP 482
+ G E M+L Y ++ ++ + + W + GG+ +P
Sbjct: 528 FLV----GECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLP 569
>pdb|3PT9|A Chain A, Crystal Structure Of Mouse Dnmt1(731-1602) In The Free
State
pdb|4DA4|A Chain A, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
pdb|4DA4|B Chain B, Structure Of Mouse Dnmt1 (731-1602) Bound To
Hemimethylated Cpg Dna
Length = 873
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 377 EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG 436
EM+++ + + D+ L++A G ++ A++F A + S PL
Sbjct: 29 EMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLEL 88
Query: 437 VVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVP 482
+ G E M+L Y ++ ++ + + W + GG+ +P
Sbjct: 89 FLV----GECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLP 130
>pdb|3PT6|A Chain A, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
pdb|3PT6|B Chain B, Crystal Structure Of Mouse Dnmt1(650-1602) In Complex With
Dna
Length = 954
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 45/106 (42%), Gaps = 4/106 (3%)
Query: 377 EMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSG 436
EM+++ + + D+ L++A G ++ A++F A + S PL
Sbjct: 110 EMLEVGDCVSVIPDDSSKPLYLARVTALWEDKNGQMMFHAHWFCAGTDTVLGATSDPLEL 169
Query: 437 VVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVP 482
+ G E M+L Y ++ ++ + + W + GG+ +P
Sbjct: 170 FLV----GECENMQLSYIHSKVKVIYKAPSENWAMEGGTDPETTLP 211
>pdb|2K8I|A Chain A, Solution Structure Of E.Coli Slyd
Length = 171
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
Query: 519 GNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560
G +PV++TA E D V DGNH A Q F NV V A
Sbjct: 103 GPVPVEITAVEDDHVVVDGNHMLAGQNLKF------NVEVVA 138
>pdb|4EJ3|A Chain A, Crystal Structure Of A Crispr Associated Protein From
Thermus Thermophilus Hb8
pdb|4EJ3|B Chain B, Crystal Structure Of A Crispr Associated Protein From
Thermus Thermophilus Hb8
Length = 514
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
+E L S K ++ EK LKMAE +G +K ++ VVG R
Sbjct: 368 REVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGER 415
>pdb|2PV0|B Chain B, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|A Chain A, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PV0|C Chain C, Dna Methyltransferase 3 Like Protein (Dnmt3l)
pdb|2PVC|B Chain B, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|A Chain A, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
pdb|2PVC|C Chain C, Dnmt3l Recognizes Unmethylated Histone H3 Lysine 4
Length = 386
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 1/88 (1%)
Query: 268 NRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNR 327
N+++ + + E P T+P + G L V + + A +AL +E LSL + N
Sbjct: 291 NKEDLDVASRFLEMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQN- 349
Query: 328 KKKDKKGYEKVLKMAENMGISIKETSKH 355
K+ K + K+ +N + ++E K+
Sbjct: 350 KQSSKLAAKWPTKLVKNCFLPLREYFKY 377
>pdb|4F3E|A Chain A, Crystal Structure Of Thermus Thermophilus Hb8 Casa
pdb|4F3E|B Chain B, Crystal Structure Of Thermus Thermophilus Hb8 Casa
Length = 502
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
+E L S K ++ EK LKMAE +G +K ++ VVG R
Sbjct: 356 REVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGER 403
>pdb|4AN8|A Chain A, Structure Of Thermus Thermophilus Casa (Cse1)
pdb|4AN8|B Chain B, Structure Of Thermus Thermophilus Casa (Cse1)
Length = 506
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 24/48 (50%)
Query: 317 QEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNR 364
+E L S K ++ EK LKMAE +G +K ++ VVG R
Sbjct: 360 REVYPLPSGLLTPKAEENLEKALKMAEELGQGLKHLAQEVAKAVVGER 407
>pdb|2QRV|B Chain B, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|C Chain C, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|F Chain F, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
pdb|2QRV|G Chain G, Structure Of Dnmt3a-Dnmt3l C-Terminal Domain Complex
Length = 230
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 280 EAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVL 339
E P T+P + G L V + + A +AL +E LSL + N K+ K +
Sbjct: 147 EMEPVTIPDVHGGSLQNAVRVWSNIPAIRSRHWALVSEEELSLLAQN-KQSSKLAAKWPT 205
Query: 340 KMAENMGISIKETSKH 355
K+ +N + ++E K+
Sbjct: 206 KLVKNCFLPLREYFKY 221
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL-----HHLVGHQVSNNSHI 578
DV +DD A+GN S + A+ +++ G LL +H +G Q+ +N HI
Sbjct: 19 DVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHI 78
Query: 579 EDSSTATV 586
S +
Sbjct: 79 RVESDVII 86
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 524 DVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL-----HHLVGHQVSNNSHI 578
DV +DD A+GN S + A+ +++ G LL +H +G Q+ +N HI
Sbjct: 20 DVNYDLVDDFGANGNDTSDDSNALQRAINAISRKPNGGTLLIPNGTYHFLGIQMKSNVHI 79
Query: 579 EDSSTATV 586
S +
Sbjct: 80 RVESDVII 87
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,049,797
Number of Sequences: 62578
Number of extensions: 583430
Number of successful extensions: 1076
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1052
Number of HSP's gapped (non-prelim): 28
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)