BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007847
(587 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q76NT0|MRM1_DICDI Mitochondrial rRNA methyltransferase OS=Dictyostelium discoideum
GN=mrm1 PE=3 SV=1
Length = 531
Score = 150 bits (378), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 89/268 (33%), Positives = 139/268 (51%), Gaps = 55/268 (20%)
Query: 329 KKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPIS 388
+K+ ++++K + + I ++ +K L+ RPHQG++LDASPL ++ I L+
Sbjct: 284 RKNLVALKEIVKNSFKLKIPVRSVNKGTLDSFSKGRPHQGIILDASPLTLLNIDFLEKFD 343
Query: 389 ADE-----------------------DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVV 425
+E D+ LW+ LDE+ DPQN+GAIIR+ FF GVV
Sbjct: 344 INERVNKRMNGGGGGGGGGGGNKINNDKYPLWLVLDELWDPQNVGAIIRNCSFFNIDGVV 403
Query: 426 LCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV-----SSKA 480
+ KNS+P++ SK+SSG+ E + ++ FL SS NGW V+G S+ +
Sbjct: 404 ISNKNSSPITPAASKSSSGACESFVINRTESIEGFLKSSQRNGWNVVGTSLDDLNENQPC 463
Query: 481 VPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG 540
+ +N+I QPTIL+LG+EG GL+P V C ++I G GN+
Sbjct: 464 LDINQIKLDQPTILILGNEGFGLKPSVLEICNKTIKIVG-----------------GNY- 505
Query: 541 SAEQFQSFMAVESLNVSVAAGVLLHHLV 568
++SLNVSV +G+L+H L+
Sbjct: 506 ---------KIDSLNVSVTSGILIHTLL 524
>sp|Q6IN84|MRM1_HUMAN rRNA methyltransferase 1, mitochondrial OS=Homo sapiens GN=MRM1
PE=1 SV=1
Length = 353
Score = 145 bits (367), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 99/293 (33%), Positives = 151/293 (51%), Gaps = 42/293 (14%)
Query: 286 VPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENM 345
VP E L+G+ P L AL A R L +Q G + R + +L+MAE
Sbjct: 44 VPTSRLELLFGMTPCLLALQAARRSVARLLLQAGKAGLQGKRAE--------LLRMAEAR 95
Query: 346 GISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTD 405
I + + L+ + + HQG+ ++ SPL +E S +D LW+ LD + D
Sbjct: 96 DIPVLRPRRQKLDTMCRYQVHQGVCMEVSPLRPRPWREAGEASPGDDPQQLWLVLDGIQD 155
Query: 406 PQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSA 465
P+N GA++RSA+F G V+ +NS PL+ VVSK+S+G++E+M++ +++ FL + A
Sbjct: 156 PRNFGAVLRSAHFLGVDKVITSRRNSCPLTPVVSKSSAGAMEVMDVFSTDDLTGFLQTKA 215
Query: 466 ENGWRVLG--GSVSSKAVPLNEIPP--------GQPTILVLGSEGTGLRPLVERSCTHLV 515
+ GW V G G S++ +EIP +PT+LVLG+EG+GL V+ SC L+
Sbjct: 216 QQGWLVAGTVGCPSTEDPQSSEIPIMSCLEFLWERPTLLVLGNEGSGLSQEVQASCQLLL 275
Query: 516 RIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
I +P + Q +ESLNVSVAAG+LLH +
Sbjct: 276 TI---LP---------------------RRQLPPGLESLNVSVAAGILLHSIC 304
>sp|O94631|MRM1_SCHPO rRNA methyltransferase, mitochondrial OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=mrm1 PE=3 SV=1
Length = 301
Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 108/311 (34%), Positives = 154/311 (49%), Gaps = 76/311 (24%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E ++G V AL+ + RE ALYVQ + S + +K Y+ I IK
Sbjct: 32 EFVFGTHSVKNALATRKRECRALYVQNA-DIHSEFEEFLNKLQYK----------IPIKS 80
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKEL-----------------------DPIS 388
+K LN + RPH G+VL+AS L + I +L S
Sbjct: 81 VNKEHLNQITACRPHNGVVLEASSLNVPTISDLLFPAGEEYNNKNGQDSPHNDLNEGKSS 140
Query: 389 ADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL 448
+ ++ L+V +D +TDPQN+GA+IRSAY GA G++L K++ LS VVSKAS+G+LE+
Sbjct: 141 SSDNYPPLYVYVDGITDPQNMGAVIRSAYILGAKGILLSKKHNTFLSPVVSKASAGALEV 200
Query: 449 MELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE---IPP--------GQPTILVLG 497
+ + N M FL +S GW+V+G + A+P N+ P +P ILVLG
Sbjct: 201 FNISHVKNPMVFLRNSVLKGWKVIG---TKPALPDNKDQIYTPHKIKTELMNEPKILVLG 257
Query: 498 SEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVS 557
SE GLR + C+H V IPG +++ V+SLNVS
Sbjct: 258 SE-KGLRTNILTQCSHYVSIPG----------------------GDKY-----VDSLNVS 289
Query: 558 VAAGVLLHHLV 568
VAAG+LL+ LV
Sbjct: 290 VAAGILLYSLV 300
>sp|Q99J25|MRM1_MOUSE rRNA methyltransferase 1, mitochondrial OS=Mus musculus GN=Mrm1
PE=2 SV=2
Length = 320
Score = 130 bits (328), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 133/246 (54%), Gaps = 36/246 (14%)
Query: 337 KVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASL 396
++L++AE GI + + L+ + G + HQG+ ++ SPL E S+ +D L
Sbjct: 85 ELLRVAEARGIPVLRPRRQKLDALCGYQVHQGVCMEVSPLRPRPCDEAADTSSGDDPQQL 144
Query: 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN 456
W+ L+ + DP+NLGA++RSA+F G V+ +NS PL+ VVSKAS+G++E+M++ +
Sbjct: 145 WLVLEGLQDPRNLGAVMRSAHFLGVDRVITSQRNSCPLTPVVSKASAGAMEVMDVFATPD 204
Query: 457 MMQFLVSSAENGWRVLGG--------SVSSKAVPLN---EIPPGQPTILVLGSEGTGLRP 505
+ FL + A+ GW V+G S SSK VP+ E +PT+LVLGSEG+GL
Sbjct: 205 LPGFLQAKAQQGWLVVGTVGCPGPEISQSSK-VPITSCLEFVWDRPTLLVLGSEGSGLSQ 263
Query: 506 LVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLH 565
V SC L+ I +P H +ESLNVSVA G+LLH
Sbjct: 264 EVFASCQLLLTI---LPR--------------RHLPP-------GLESLNVSVATGILLH 299
Query: 566 HLVGHQ 571
+ +
Sbjct: 300 SICSQK 305
>sp|A4T5L0|Y1447_MYCGI Uncharacterized tRNA/rRNA methyltransferase Mflv_1447
OS=Mycobacterium gilvum (strain PYR-GCK) GN=Mflv_1447
PE=3 SV=1
Length = 314
Score = 120 bits (300), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 92/273 (33%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A ALYV G D++ E V +MA + GISI E
Sbjct: 71 EIVLGRNPVVECLRAGV-PATALYVALG--------TDADERLTESV-QMAADRGISILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P +L + + +L VALD ++DP+NLGA
Sbjct: 121 VQRHDLDRMAANGLHQGIALQVPPYAYAHPDDLLRDAKSDAAPALLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVVL + SA ++ V + S+G+ + N+ + L A+ G +V
Sbjct: 181 IVRSVAAFGGHGVVLPQRRSASVTAVAWRTSAGAAARTPVARATNLNRTLKQYADAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++EI PTI+V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDAGGDTT-IDEIDGLTPTIVVVGSEGKGLSRLVRENCDRIVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 291 -------------------TESLNASVAAGVVL 304
>sp|Q6FF50|RLMB_ACIAD 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Acinetobacter
sp. (strain ADP1) GN=rlmB PE=3 SV=1
Length = 248
Score = 116 bits (291), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/268 (30%), Positives = 134/268 (50%), Gaps = 37/268 (13%)
Query: 306 AKTREFYALYVQEGL-------SLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLN 358
AK +Y ++ E L L+ K +D + +K+L++AE GIS+++ S+ L
Sbjct: 2 AKPEYYYGVHSVESLLELEPERVLTLFTLKGRDDQRLQKILELAEPFGISVQKASRDSLE 61
Query: 359 MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYF 418
+ G HQG+V P ++ K+LD + + DQA L +ALD+VTDP NLGA IR+A
Sbjct: 62 KLAGLPFHQGVVAAVRPHPVLNEKDLDQLLQNNDQA-LLLALDQVTDPHNLGACIRTAAA 120
Query: 419 FGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGW-RVLGGSVS 477
G + V++ SA L+ K ++G E ++ N+ + L + + +V+G +
Sbjct: 121 MGIAAVIVPRDRSASLTPTARKVAAGGAEKVKFIQVTNLARTLAHIKAHFFVKVVGTMLD 180
Query: 478 SKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADG 537
KA+P+ + +V+G+E TGLRP+ + C V IP G
Sbjct: 181 EKALPIQKYDFSGNVAIVMGAEDTGLRPITQSQCDQTVYIP----------------MSG 224
Query: 538 NHGSAEQFQSFMAVESLNVSVAAGVLLH 565
N ++SLNVSVAAG+ L+
Sbjct: 225 N------------LQSLNVSVAAGMALY 240
>sp|A0QAB6|Y574_MYCA1 Uncharacterized tRNA/rRNA methyltransferase MAV_0574
OS=Mycobacterium avium (strain 104) GN=MAV_0574 PE=3
SV=1
Length = 309
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 134/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GISI E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESVSRAADS-GISILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + GN HQG+ L P +L +A A L VALD ++DP+NLGA
Sbjct: 118 VPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSPPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGDTT-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GSA ESLN SVAAGV+L +
Sbjct: 283 ------MAGSA---------ESLNASVAAGVVLAEI 303
>sp|P74328|Y955_SYNY3 Uncharacterized tRNA/rRNA methyltransferase slr0955
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=slr0955 PE=3 SV=1
Length = 384
Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 78/266 (29%), Positives = 129/266 (48%), Gaps = 18/266 (6%)
Query: 260 EKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEG-------LYGVGPVLAALSAKTREFY 312
+KP Y + + + + + P+ P M E LYG VLAAL R+
Sbjct: 85 DKPRYGDDRPRRSGQKPPFGKTFPAAPPPMDSEQAQEALDLLYGHHAVLAALDGD-RQLN 143
Query: 313 ALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372
+++ L R K ++ A+ G + E LN + N HQG+
Sbjct: 144 RIWITSHLRHDIRYRTK---------IQTAKANGTVVDEVDNFRLNQITHNANHQGIAAQ 194
Query: 373 ASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSA 432
+P ++ +L + + A + + +D +TDP NLGAIIR+A FGA G+VL + A
Sbjct: 195 VAPYHYWELGDLIDKAKSQSTAPVLIIIDSITDPHNLGAIIRTAEAFGAQGMVLPQRRVA 254
Query: 433 PLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPT 492
++ V K ++G+LE + N+ + L + E+G+ + G+V+ K L++ +P
Sbjct: 255 GITSTVMKVAAGALEHFPVARVVNLSRALETLKESGFWIY-GTVAGKQTALHQADLREPM 313
Query: 493 ILVLGSEGTGLRPLVERSCTHLVRIP 518
LV+GSEG GL L ++ C HL+ IP
Sbjct: 314 GLVIGSEGEGLSLLTQKHCDHLITIP 339
>sp|Q743W2|Y479_MYCPA Uncharacterized tRNA/rRNA methyltransferase MAP_0479
OS=Mycobacterium paratuberculosis (strain ATCC BAA-968 /
K-10) GN=MAP_0479 PE=3 SV=1
Length = 309
Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 92/276 (33%), Positives = 135/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GISI E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTESVSRAADS-GISILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + GN HQG+ L P +L +A A L VALD ++DP+NLGA
Sbjct: 118 VPRADLDRMTGNHLHQGIALQVPPYIYAHPDDLLEAAAGSLPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLQDWADRGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ P ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGDTM-LDDLDGSDPLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GSA ESLN SVAAGV+L +
Sbjct: 283 ------MAGSA---------ESLNASVAAGVVLAEI 303
>sp|A0PV26|Y4155_MYCUA Uncharacterized tRNA/rRNA methyltransferase MUL_4155
OS=Mycobacterium ulcerans (strain Agy99) GN=MUL_4155
PE=3 SV=1
Length = 310
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G+ + D++ E V + A++ GI I E
Sbjct: 69 ETVLGRNPVLECLRAGV-PSTALYVALGV--------EADERLTESVSRAADS-GIPILE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D A L VALD ++DP+NLGA
Sbjct: 119 VPRTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPA-LLVALDNISDPRNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ M + N+ + L A+ G RV
Sbjct: 178 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRV 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++++ P ++V+GSEG GL LV ++C +V +P P
Sbjct: 238 VGLDAGGDTA-IDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGP--------- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 288 -------------------TESLNASVAAGVVLAEI 304
>sp|B2HJ20|Y5079_MYCMM Uncharacterized tRNA/rRNA methyltransferase MMAR_5079
OS=Mycobacterium marinum (strain ATCC BAA-535 / M)
GN=MMAR_5079 PE=3 SV=1
Length = 310
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/276 (31%), Positives = 131/276 (47%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G+ + D++ E V + A++ GI I E
Sbjct: 69 ETVLGRNPVLECLRAGV-PSTALYVALGV--------EADERLTESVSRAADS-GIPILE 118
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D A L VALD ++DP+NLGA
Sbjct: 119 VPRTDLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDTPPA-LLVALDNISDPRNLGA 177
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ M + N+ + L A+ G RV
Sbjct: 178 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARMPVARATNLTRALKDWADRGVRV 237
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G ++++ P ++V+GSEG GL LV ++C +V +P P
Sbjct: 238 VGLDAGGDTA-IDDLDGSDPIVVVVGSEGKGLSRLVRQTCDEVVSVPMAGP--------- 287
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 288 -------------------TESLNASVAAGVVLAEI 304
>sp|P25270|MRM1_YEAST rRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MRM1 PE=1 SV=2
Length = 412
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 92/319 (28%), Positives = 143/319 (44%), Gaps = 71/319 (22%)
Query: 290 VGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI 349
+ E +YG V AAL +R ++ + G S K L++ + + ++
Sbjct: 122 IFEYVYGTNSVYAALLNPSRNCHSRLLYHGTIPS-------------KFLQIVDELKVTT 168
Query: 350 KETSKHDLNMVVGNRPHQGLVLDASPLEMVKIK---ELDPISA----------------- 389
+ KH LN++ H + L+ PL+ V+I ++D SA
Sbjct: 169 ELVDKHRLNLLTNYGVHNNIALETKPLQPVEIAYLGDMDTSSAALSIHELGFNNENIPHE 228
Query: 390 -------DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKAS 442
D + L + LDE+TDP N+GAIIRSAYF G +V+ +N +PL+ VVSK S
Sbjct: 229 LPYGTKTDAKKFPLGLYLDEITDPHNIGAIIRSAYFLGVDFIVMSRRNCSPLTPVVSKTS 288
Query: 443 SGSLELMELRYCNNMMQFLVSSAE-NGWRV----LGGSVSSKAV--------PLNEIPPG 489
SG+LEL+ + Y + ++F S E GW L + S K LN +
Sbjct: 289 SGALELLPIFYVDKPLEFFTKSQEMGGWTFITSHLANATSEKYTVGKTISMHDLNGLCNE 348
Query: 490 QPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549
P +LV+G+E G+R ++ V IP G I+ GN
Sbjct: 349 LPVVLVVGNESQGVRTNLKMRSDFFVEIP--------FGGIE----KGNRAPEP------ 390
Query: 550 AVESLNVSVAAGVLLHHLV 568
V+SLNVSVA +L+ +++
Sbjct: 391 IVDSLNVSVATALLIDNIL 409
>sp|A1TG08|Y5337_MYCVP Uncharacterized tRNA/rRNA methyltransferase Mvan_5337
OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
GN=Mvan_5337 PE=3 SV=1
Length = 314
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 86/273 (31%), Positives = 128/273 (46%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G D++ E V ++A + GI+I E
Sbjct: 71 EIVLGRNPVLECLRAGV-PATALYVALG--------ADSDERLTESV-QIAADKGIAILE 120
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+HDL+ + N HQG+ L P +L + + +L VALD ++DP+NLGA
Sbjct: 121 VPRHDLDRIAANGMHQGIALQVPPYNYAHPDDLLAEAKSDAMPALLVALDNISDPRNLGA 180
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + N+ + L A+ G +V
Sbjct: 181 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARTPVARATNLTRALKQWADAGLQV 240
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G +++I P ++V+GSEG GL LV +C +V IP P
Sbjct: 241 VGLDADGDTT-VDQIDGAGPIVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 290
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 291 -------------------TESLNASVAAGVVL 304
>sp|Q9CCW4|Y324_MYCLE Uncharacterized tRNA/rRNA methyltransferase ML0324 OS=Mycobacterium
leprae (strain TN) GN=ML0324 PE=3 SV=2
Length = 309
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + DK+ E V++ A+ +G++I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALGTEV--------DKRLTESVMRAAD-VGVAILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + N HQG+ L P V +L + D A L VALD ++DP+NLGA
Sbjct: 118 VPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F G+++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P +V+GSEG GL LV SC +V IP AG+
Sbjct: 237 IGLDHDGDTA-LDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIP-------MAGQ-- 286
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVA GV+L
Sbjct: 287 -------------------VESLNASVAVGVVL 300
>sp|B8ZUB0|Y324_MYCLB Uncharacterized tRNA/rRNA methyltransferase MLBr00324
OS=Mycobacterium leprae (strain Br4923) GN=MLBr00324
PE=3 SV=2
Length = 309
Score = 111 bits (278), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 130/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + DK+ E V++ A+ +G++I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALGTEV--------DKRLTESVMRAAD-VGVAILE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ L+ + N HQG+ L P V +L + D A L VALD ++DP+NLGA
Sbjct: 118 VPRTYLDRITNNHLHQGIALQVPPYHYVHSDDLLAAATDSPPA-LLVALDNISDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F G+++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFSGHGILIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRALKVWADQGLRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ P +V+GSEG GL LV SC +V IP AG+
Sbjct: 237 IGLDHDGDTA-LDDLDGTDPLAVVVGSEGKGLSRLVRHSCDEVVSIP-------MAGQ-- 286
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
VESLN SVA GV+L
Sbjct: 287 -------------------VESLNASVAVGVVL 300
>sp|A0R557|Y6073_MYCS2 Uncharacterized tRNA/rRNA methyltransferase MSMEG_6073/MSMEI_5913
OS=Mycobacterium smegmatis (strain ATCC 700084 /
mc(2)155) GN=MSMEG_6073 PE=3 SV=1
Length = 314
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 89/273 (32%), Positives = 129/273 (47%), Gaps = 39/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L AK ALYV G D++ E V ++A + GISI E
Sbjct: 72 ELVLGRNPVLECLRAKV-PATALYVALG--------TDADERVTESV-QIAADRGISILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + + HQGL L P +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRTDLDRMSNHGLHQGLGLQVPPYAYAHPDDLLATARADAAPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS F GVV+ + SA ++ V + S+G+ + + N+ + L S A+ G ++
Sbjct: 182 IVRSVAAFAGHGVVIPQRRSASVTAVAWRTSAGAAARVPVARATNLNRTLKSFADAGLQI 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ PT++V+GSEG GL LV C +V IP P
Sbjct: 242 VGLDAGGDTT-LDELDATGPTVVVVGSEGKGLSRLVREHCDAIVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
ESLN SVAAGV+L
Sbjct: 292 -------------------TESLNASVAAGVVL 305
>sp|A5U8Q4|Y3618_MYCTA Uncharacterized tRNA/rRNA methyltransferase MRA_3618
OS=Mycobacterium tuberculosis (strain ATCC 25177 /
H37Ra) GN=MRA_3618 PE=3 SV=1
Length = 322
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>sp|P96861|Y3579_MYCTU Uncharacterized tRNA/rRNA methyltransferase Rv3579c/MT3685
OS=Mycobacterium tuberculosis GN=Rv3579c PE=3 SV=1
Length = 322
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 40/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
A Q ESLN SVAAGV+L +
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVLAEI 303
>sp|A1KPR5|Y3644_MYCBP Uncharacterized tRNA/rRNA methyltransferase BCG_3644c
OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2)
GN=BCG_3644c PE=3 SV=1
Length = 322
Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 132/273 (48%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLD-AGGGTALDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A Q ESLN SVAAGV+L
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVL 300
>sp|Q7TW55|Y3610_MYCBO Uncharacterized tRNA/rRNA methyltransferase Mb3610c
OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97)
GN=Mb3610c PE=3 SV=1
Length = 402
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 131/273 (47%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L A ALYV G + D++ E V + A++ GI+I E
Sbjct: 68 ETVLGRNPVLECLRAGV-PATALYVALG--------TEADERLTECVARAADS-GIAIVE 117
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQG+ L P +L + D+ A L VALD ++DP+NLGA
Sbjct: 118 LLRADLDRMTANHLHQGIALQVPPYNYAHPDDLLAAALDQPPA-LLVALDNLSDPRNLGA 176
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L A+ G RV
Sbjct: 177 IMRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARIPVARATNLTRTLKGWADRGVRV 236
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+++ ++V+GSEG GL LV ++C +V IP
Sbjct: 237 IGLDAGGGTA-LDDVDGTDSLVVVVGSEGKGLSRLVRQNCDEVVSIP------------- 282
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
A Q ESLN SVAAGV+L
Sbjct: 283 ---------MAAQ------AESLNASVAAGVVL 300
>sp|Q06753|YACO_BACSU Putative TrmH family tRNA/rRNA methyltransferase YacO OS=Bacillus
subtilis (strain 168) GN=yacO PE=3 SV=2
Length = 249
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 123/233 (52%), Gaps = 32/233 (13%)
Query: 336 EKVLKMAENMGISIKETSKHDLN-MVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQA 394
++V+++A+ GI+I+ + L+ MV G HQG+V + E ++ +L + ++++
Sbjct: 39 QQVIELAKKQGITIQYVPRKKLDQMVTGQ--HQGVVAQVAAYEYAELDDLYKAAEEKNEQ 96
Query: 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC 454
++ LDE+ DP NLG+I+R+A GA G+V+ + + L+ V+KAS+G++E + +
Sbjct: 97 PFFLILDELEDPHNLGSIMRTADAVGAHGIVIPKRRAVGLTTTVAKASTGAIEHIPVARV 156
Query: 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514
N+ + L E G V+G S++ + P LV+GSEG G+ LV+ C L
Sbjct: 157 TNLARTLEEMKERGIWVVGTDASARE-DFRNMDGNMPLALVIGSEGKGMGRLVKEKCDFL 215
Query: 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
+++P AG+ V SLN SVAAG+L++ +
Sbjct: 216 IKLP-------MAGK---------------------VTSLNASVAAGLLMYEV 240
>sp|B1MGY6|Y572_MYCA9 Uncharacterized tRNA/rRNA methyltransferase MAB_0572
OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
44196) GN=MAB_0572 PE=3 SV=1
Length = 315
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/276 (31%), Positives = 130/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PVL L ALYV ++ ++N D++ E V +A + GI+I E
Sbjct: 74 EMVLGRNPVLECLRTGV-PATALYV----AVGADN----DERLTESV-ALAADAGIAILE 123
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + E Q +L VALD ++DP+NLGA
Sbjct: 124 VPRPDLDRMSTNGLHQGLALQIPPYKYAHPDDLLARARAEAQPALLVALDNISDPRNLGA 183
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GVV+ + SA ++ V + S+G+ + + N+ + L + G +
Sbjct: 184 IVRSVAAFGGHGVVIPQRRSASVTAVAWRTSAGAAARLPVARATNLTRTLKDWQDKGITI 243
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+ + +V+GSEG GL LV ++C +V IP P
Sbjct: 244 VGLDAGGD-TELDNLDGVGDIAVVVGSEGKGLSQLVRKTCDAVVSIPMAGP--------- 293
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
VESLN SVAAGV+L +
Sbjct: 294 -------------------VESLNASVAAGVVLAEI 310
>sp|Q9KNY2|RLMB_VIBCH 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba
N16961) GN=rlmB PE=3 SV=1
Length = 247
Score = 103 bits (258), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/287 (30%), Positives = 130/287 (45%), Gaps = 42/287 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L F YV +G ++D + VL +G+S
Sbjct: 1 MSNELIYGIHAVNAVLQRDPARFVEAYVLKG---------RQDDR-LLPVLNELMRLGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I+E S+ L+ HQGL+ P + +LD I A +Q L V LD VTDP N
Sbjct: 51 IQEMSRKALDDKAEGANHQGLIARVKPARQLNENDLDDILAQHEQPLLLV-LDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAPL+ VSK + G+ E + L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPLTATVSKVACGAAETVPLVRVTNLARTMRALQEKG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + +V+G+EG G+R L +C L++IP A
Sbjct: 170 VWFV--GTAGEATHDIYQSKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSN 574
G +V SLNVSVA GV L V +++N
Sbjct: 221 G---------------------SVSSLNVSVACGVCLFEAVRQRMAN 246
>sp|Q83CW6|RLMB_COXBU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=rlmB
PE=3 SV=1
Length = 250
Score = 100 bits (248), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 78/274 (28%), Positives = 126/274 (45%), Gaps = 40/274 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG+ V L A + LYVQE +D + + +++ A+ +G+ + S
Sbjct: 7 IYGIHAVSGVLDAAPQRIVKLYVQE----------NRDDQRLQSLVEKAKALGVKVILLS 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ +LN + N HQG+V D +E + L + + +L + LD V DP NLGA +
Sbjct: 57 RTELN-TLSNEKHQGIVADCEEVENLDESALLSLLKKRETPALLLILDGVKDPHNLGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
RSA FG V+ + ++ VV K + G+ E+ N+ + + + G ++G
Sbjct: 116 RSANAFGVRAVIAPKDRAVGVTPVVRKVACGAAEMTPFIRVTNLSRTIDWLQKEGVWIVG 175
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+V ++ + + EI +VLGSEG GLR L + C L +IP
Sbjct: 176 TAVEAETL-IQEIDLTGDIAIVLGSEGAGLRRLTKERCDFLAQIP--------------- 219
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
GS VESLNVSVA G+ L+ +
Sbjct: 220 ----LRGS---------VESLNVSVACGICLYEV 240
>sp|Q7MH13|RLMB_VIBVY 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
vulnificus (strain YJ016) GN=rlmB PE=3 SV=1
Length = 247
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 46/290 (15%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L + F YV +G ++D + +L + +G+S
Sbjct: 1 MSNEFIYGIHAVRAVLDKEPERFIEAYVLKG---------RQDDR-LMPILNELQMVGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
+++ ++ L+ HQG++ P + + +LD I A + + L + LD VTDP N
Sbjct: 51 LQQMTRKTLDDKAHGANHQGIIARVKPAKQLNENDLDDILA-KHASPLLLILDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAP++ VSK + G+ E + L N+ + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPT---ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
++G + + ++I + T +V+G+EG G+R L +C L++IP
Sbjct: 170 IWIVGTAGEAT----HDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP------- 218
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
AG AV SLNVSVA+G+ L V ++++
Sbjct: 219 MAG---------------------AVSSLNVSVASGICLFEAVRQRLASQ 247
>sp|Q8DCT8|RLMB_VIBVU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
vulnificus (strain CMCP6) GN=rlmB PE=3 SV=1
Length = 247
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 137/290 (47%), Gaps = 46/290 (15%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L + F YV +G ++D + +L + +G+S
Sbjct: 1 MSNEFIYGIHAVRAVLDKEPERFIEAYVLKG---------RQDDR-LMPILNELQMVGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
+++ ++ L+ HQG++ P + + +LD I A + + L + LD VTDP N
Sbjct: 51 LQQMTRKTLDDKAHGANHQGIIARVKPAKQLNENDLDDILA-KHASPLLLILDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + V++ SAP++ VSK + G+ E + L N+ + + E G
Sbjct: 110 LGACLRNADAAGVAAVIVPKDKSAPMTATVSKVACGAAETVPLVRVTNLARTMRHLQEQG 169
Query: 469 WRVLGGSVSSKAVPLNEIPPGQPT---ILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDV 525
++G + + ++I + T +V+G+EG G+R L +C L++IP
Sbjct: 170 IWIVGTAGEAT----HDIYQAKLTGSLAIVMGAEGDGMRRLTRETCDDLIKIP------- 218
Query: 526 TAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVSNN 575
AG AV SLNVSVA+G+ L V ++++
Sbjct: 219 MAG---------------------AVSSLNVSVASGICLFEAVRQRLASQ 247
>sp|Q87L11|RLMB_VIBPA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=rlmB PE=3 SV=1
Length = 247
Score = 96.3 bits (238), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 133/286 (46%), Gaps = 42/286 (14%)
Query: 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGIS 348
M E +YG+ V A L + F YV +G ++D + +L + G+S
Sbjct: 1 MSNEFIYGIHAVKAVLEREPERFIEAYVLKG---------RQDDR-LMPILNDLQVCGVS 50
Query: 349 IKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQN 408
I++ ++ L+ HQG++ + + ++D I A + + L + LD VTDP N
Sbjct: 51 IQQMTRKTLDDKAHGANHQGIIARVKVAKQLNENDIDDILA-QHETPLLLVLDGVTDPHN 109
Query: 409 LGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG 468
LGA +R+A G + +++ SAP++ VSK + G+ E++ L N+ + + + E G
Sbjct: 110 LGACLRNADAAGVAAIIVPKDRSAPMNATVSKVACGAAEVVPLIRVTNLARTMRTLQEQG 169
Query: 469 -WRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTA 527
W V G+ + + P +V+G+EG G+R L +C L++IP A
Sbjct: 170 IWFV--GTAGEATHDIYQAKLTGPLAIVMGAEGDGMRRLTRETCDDLIKIP-------MA 220
Query: 528 GEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
G +V SLNVSVA+G+ L V +++
Sbjct: 221 G---------------------SVSSLNVSVASGICLFEAVRQRLA 245
>sp|Q87VK2|RLMB_PSESM 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
syringae pv. tomato (strain DC3000) GN=rlmB PE=3 SV=1
Length = 250
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 79/273 (28%), Positives = 126/273 (46%), Gaps = 40/273 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG ++ + ++ +A ++I +
Sbjct: 5 EKIYGVHAVEALLRHHPKRVKHIWLAEG----------RNDPRVQTLVALASENRVTIGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +++ V HQG+V D SP ++ LD + + L + LD VTDP NLGA
Sbjct: 55 AERREMDAWVEGV-HQGVVADVSPSQVWGEAMLDELLDRSEGPPLLLVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A GA V++ SA L+ V K + G+ E++ L N+ + L + G V
Sbjct: 114 CLRTADAAGALAVIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+ G+ V L + PTI+++G+EG G+R L C +LVR+P AG
Sbjct: 174 V-GTAGEAEVELYQQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
+V SLNVSVA GV L
Sbjct: 223 ------------------SVSSLNVSVATGVCL 237
>sp|A1UMF4|Y4822_MYCSK Uncharacterized tRNA/rRNA methyltransferase Mkms_4822
OS=Mycobacterium sp. (strain KMS) GN=Mkms_4822 PE=3 SV=1
Length = 314
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 132/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV G + D++ E V A+N GISI E
Sbjct: 72 ELVLGRNPVVECLRAEV-PATALYVAMG--------TEADERVTEAVQIAADN-GISILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L S A+ G +V
Sbjct: 182 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 242 VGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 292 -------------------TESLNASVAAGVVLAEI 308
>sp|Q1B2P4|Y4736_MYCSS Uncharacterized tRNA/rRNA methyltransferase Mmcs_4736
OS=Mycobacterium sp. (strain MCS) GN=Mmcs_4736 PE=3 SV=1
Length = 314
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/276 (32%), Positives = 132/276 (47%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV G + D++ E V A+N GISI E
Sbjct: 72 ELVLGRNPVVECLRAEV-PATALYVAMG--------TEADERVTEAVQIAADN-GISILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L S A+ G +V
Sbjct: 182 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 242 VGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 292 -------------------TESLNASVAAGVVLAEI 308
>sp|A3Q6V9|Y5122_MYCSJ Uncharacterized tRNA/rRNA methyltransferase Mjls_5122
OS=Mycobacterium sp. (strain JLS) GN=Mjls_5122 PE=3 SV=1
Length = 314
Score = 93.6 bits (231), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 133/276 (48%), Gaps = 39/276 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E + G PV+ L A+ ALYV G + D++ E V ++A + GISI E
Sbjct: 72 ELVLGRNPVVECLRAEV-PATALYVAMG--------TEADERVTEAV-QIAADSGISILE 121
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ DL+ + N HQGL L P + +L + + +L VALD ++DP+NLGA
Sbjct: 122 VPRSDLDRMSNNALHQGLGLQVPPYDYAHPDDLLATAKADGAPALLVALDNISDPRNLGA 181
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
I+RS FG GV++ + SA ++ V + S+G+ + + N+ + L S A+ G +V
Sbjct: 182 IVRSVAAFGGHGVLIPQRRSASVTAVAWRTSAGAAARLPVARATNLNRTLKSWADGGLQV 241
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G L+E+ P ++V+GSEG GL LV +C +V IP P
Sbjct: 242 VGLDADGDTT-LDELDGTGPVVVVVGSEGKGLSRLVRENCDAVVSIPMAGP--------- 291
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHL 567
ESLN SVAAGV+L +
Sbjct: 292 -------------------TESLNASVAAGVVLAEI 308
>sp|Q4L3J1|TRMHL_STAHJ Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=SH2477 PE=3 SV=1
Length = 249
Score = 93.2 bits (230), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 69/265 (26%), Positives = 123/265 (46%), Gaps = 42/265 (15%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+++QEG+ K+ +L+ A+ + ++ K L+ + N PHQG+
Sbjct: 25 IWIQEGIR----------KQQINDILQNAKEQKLIVQTVPKSKLDNL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + D++ S V LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFIQSQKDKEGLSTVVILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVA 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G+++ + + N+ + + E+G+ V G + A ++ P
Sbjct: 134 LTQTVAKASTGAIQHVPVMRVTNLAKTIDELKEHGYWVAGAE-ADNATDYRDMAADMPLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553
+V+GSEG G+ LV+ C ++IP G V S
Sbjct: 193 IVIGSEGQGMSRLVKDKCDFYIKIP-------MVGH---------------------VNS 224
Query: 554 LNVSVAAGVLLHHLV--GHQVSNNS 576
LN SVAA ++++ + HQV +N+
Sbjct: 225 LNASVAASLMMYEVYRKRHQVGDNA 249
>sp|Q49V41|TRMHL_STAS1 Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=SSP2224 PE=3 SV=1
Length = 249
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 100/188 (53%), Gaps = 3/188 (1%)
Query: 332 KKG-YEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD 390
KKG ++LK+A + I ++ K ++ + + PHQG+ +P E
Sbjct: 32 KKGQINEILKLANSNKIIVQSVPKSKIDGL-SDSPHQGVAAYIAPYEYADFDAFVAQQKA 90
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450
+D+ S + LD + DP NLG+I+R+A G GV++ + S L+ V+KAS+G+++ +
Sbjct: 91 QDKLSTVLILDGLEDPHNLGSILRTADASGVDGVIIPKRRSVALTQTVAKASTGAIQHIP 150
Query: 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510
+ N+ + + +NG+ ++ G+ + + E+ G P +V+GSEG G+ LV+
Sbjct: 151 VMRVTNLANTIETLKDNGYWIV-GTEAENSTDYREMDAGMPLGIVIGSEGQGMSRLVKEK 209
Query: 511 CTHLVRIP 518
C + IP
Sbjct: 210 CDFYINIP 217
>sp|Q8EAG8|RLMB_SHEON 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Shewanella
oneidensis (strain MR-1) GN=rlmB PE=3 SV=1
Length = 246
Score = 90.5 bits (223), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 124/276 (44%), Gaps = 42/276 (15%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
++G+ V A L L++ +G ++D++ +++ A+ G SI+ TS
Sbjct: 7 IFGIHAVEALLKHSPERIIELWLLQG---------REDER-LTPLIRQAKAFGTSIQVTS 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
+ L+ + HQG+V +++ +LD + A D L + LD VTDP NLGA +
Sbjct: 57 RKVLDEKAESTQHQGIVARVKAAKILAEHDLDELLAKTDLPFLLI-LDGVTDPHNLGACL 115
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRVL 472
R+A G G+++ NS L+ VVSK + G+ E + L N+ + + E G W V
Sbjct: 116 RNADAAGVQGIIVPKDNSVGLTAVVSKVACGAAETVPLFQVTNLARTMRHLQEKGVWIV- 174
Query: 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDD 532
G+ L + P + +G+EG GLR L C LV IP +
Sbjct: 175 -GTAGEADCELYQADLKGPLAIAMGAEGKGLRRLSRECCDTLVSIPMS------------ 221
Query: 533 VDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
GS V SLNVSVA G+ L V
Sbjct: 222 -------GS---------VSSLNVSVATGICLFEAV 241
>sp|Q9CJP3|RLMB_PASMU 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pasteurella
multocida (strain Pm70) GN=rlmB PE=3 SV=1
Length = 245
Score = 90.1 bits (222), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/284 (26%), Positives = 125/284 (44%), Gaps = 43/284 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ V A L+ +Y +G +D K + +L +GI+I+
Sbjct: 3 ENIYGIHAVSAFLNNAPERLIEVYALKG----------RDDKRLQPLLNELHRLGITIQF 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ L+ HQG++ P + + +LD + ++ L V LD VTDP NLGA
Sbjct: 53 VNRQTLDKKAEGEVHQGIMARVQPAKELNEADLDTLLQNQSNPLLLV-LDGVTDPHNLGA 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL--VSSAENGW 469
+R+A G V++ SA L+ + K + G+ E++ L N+ + L + N W
Sbjct: 112 CLRTADAAGVCAVIVPKDKSAQLTAIARKVACGAAEVVPLIRVTNLARTLRELQQKHNIW 171
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V ++ + ++ G LV+G+EG G+R L C L+ IP AG
Sbjct: 172 VVGTAGEATNTLYQTQLTGGLA--LVMGAEGEGMRRLTREHCDQLISIP-------MAG- 221
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573
+V SLNVSVA GV L +V +++
Sbjct: 222 --------------------SVSSLNVSVATGVCLFEIVRQRLA 245
>sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rlmB PE=3 SV=1
Length = 248
Score = 89.4 bits (220), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 126/277 (45%), Gaps = 40/277 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + L++ EG + D + + + ++A I + +
Sbjct: 5 EKVYGVHAVEALLRHHPKRVKQLWLAEG---------RHDPR-VQVLTELAAGFRIPVGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +L+ HQG+V + SP ++ L+ + + L +ALD VTDP NLGA
Sbjct: 55 RDRRELDEW-AEGVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G V++ SA L+ V K + G+ E++ L N+ + L + G V
Sbjct: 114 CLRTADAAGVQAVIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + + L ++ PT+LV+G+EG G+R L C L R+P AG
Sbjct: 174 VGTAGEADKT-LYQLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L ++
Sbjct: 223 ------------------SVSSLNVSVATGVCLFEIL 241
>sp|Q9JUU8|RLMB_NEIMA 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup A / serotype 4A (strain Z2491)
GN=rlmB PE=3 SV=2
Length = 250
Score = 89.0 bits (219), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 81/273 (29%), Positives = 116/273 (42%), Gaps = 45/273 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG V A L + LY+QEG K D + E VL+ A N I +
Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEG---------KSDARTRE-VLEKAANENIRVYFAD 56
Query: 354 KHDLNMVVGNRPHQGLV--LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
LN + HQG+V +DAS + L+ + + + L + LD +TDP NLGA
Sbjct: 57 ADRLNAISKGARHQGVVGFIDASKNHV----HLEDVLENLSEPPLLLILDGITDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G V+ SA L+ VSK +SG+ E + N+ + L E G +
Sbjct: 113 CLRTADAMGVHAVIAPKDKSAGLNATVSKVASGAAETVPYITVTNLARTLRELKEYGIWI 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + A L V+G+EG G+R L C LV IP
Sbjct: 173 IGTDMGGNA-DLYHCDLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP------------- 218
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
F VES+NVSV+AG++L
Sbjct: 219 ---------------MFGTVESMNVSVSAGMVL 236
>sp|P44906|RLMB_HAEIN 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=rlmB PE=1 SV=1
Length = 246
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 77/279 (27%), Positives = 125/279 (44%), Gaps = 43/279 (15%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YG+ V + L+ ++V +G ++DK+ + +L ++GI ++
Sbjct: 3 EQIYGIHAVNSILTHSPERLIEVFVLKG---------REDKR-LQPLLNELYSLGIGVQF 52
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
++ L+ HQG++ + + +LD I A++ Q L + LD VTDP NLGA
Sbjct: 53 VNRQTLDKKADGEVHQGVIARVQAAKELNENDLDEILANK-QNPLLLVLDGVTDPHNLGA 111
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFL--VSSAENGW 469
+R+A GA V++ SA L+ + K + G+ E + L N+ + L + N W
Sbjct: 112 CLRTADAAGAVAVIVPKDKSAQLTSIARKVACGAAETVPLIRVTNLSRTLRDLQQNHNIW 171
Query: 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGE 529
V G+ + + P LV+G+EG G+R L C L+ IP AG
Sbjct: 172 VV--GTAGEATETIYQSKLTGPLALVMGAEGEGMRRLTREHCDQLISIP-------MAG- 221
Query: 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L +V
Sbjct: 222 --------------------SVSSLNVSVATGVCLFEIV 240
>sp|Q7A1Q9|TRMHL_STAAW Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MW2) GN=MW0487 PE=3 SV=1
Length = 248
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ S + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q6GBV6|TRMHL_STAAS Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MSSA476) GN=SAS0489 PE=3 SV=1
Length = 248
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ S + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q6GJD7|TRMHL_STAAR Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain MRSA252) GN=SAR0535 PE=3 SV=1
Length = 248
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ S + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q7A794|TRMHL_STAAN Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain N315) GN=SA0490 PE=1 SV=1
Length = 248
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ S + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q99W72|TRMHL_STAAM Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=SAV0531 PE=1 SV=1
Length = 248
Score = 88.2 bits (217), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 103/205 (50%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ S + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLSTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q88DE7|RLMB_PSEPK 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Pseudomonas
putida (strain KT2440) GN=rlmB PE=3 SV=1
Length = 248
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 127/277 (45%), Gaps = 40/277 (14%)
Query: 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE 351
E +YGV V A L + +++ EG + + E +L +A + + +
Sbjct: 5 EKIYGVHAVQALLQHHPKRVKQIWLSEG----------RSEPRLETLLALAAENRVPVGQ 54
Query: 352 TSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
+ +++ V HQG+V + SP ++ L+ + + L + LD VTDP NLGA
Sbjct: 55 AERREMDAWVEGV-HQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGA 113
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A GA+ V++ SA L+ VV K + G+ E++ L N+ + L + G V
Sbjct: 114 CLRTADAAGATAVIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G + ++ + G P ++++G+EG G+R L C LV++P AG
Sbjct: 174 VGTAGEAEQEIYQQDLTG-PLVMIMGAEGKGMRRLTREHCDFLVKLP-------MAG--- 222
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA GV L V
Sbjct: 223 ------------------SVSSLNVSVATGVCLFEAV 241
>sp|Q9JZR3|RLMB_NEIMB 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Neisseria
meningitidis serogroup B (strain MC58) GN=rlmB PE=3 SV=1
Length = 250
Score = 87.8 bits (216), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 117/273 (42%), Gaps = 45/273 (16%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
+YG V A L + LY+QEG K D + E VL+ A N I +
Sbjct: 7 IYGFHAVNARLWQNPKSIVELYIQEG---------KSDARTRE-VLEKAANENIRVYFAD 56
Query: 354 KHDLNMVVGNRPHQGLV--LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGA 411
LN + HQG+V +DAS + L+ + + + L + LD +TDP NLGA
Sbjct: 57 ADRLNAISKGARHQGVVGFIDASKNHV----HLEDVLENLSEPPLLLILDGITDPHNLGA 112
Query: 412 IIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471
+R+A G V+ SA L+ VSK + G+ E + N+ + L E G +
Sbjct: 113 CLRTADAMGVHAVIAPKDKSAGLNATVSKVACGAAETVPYITVTNLARTLRELKEYGIWI 172
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
+G +S ++ L V+G+EG G+R L C LV IP
Sbjct: 173 IGTDMSGES-DLYHCNLPDSAAWVMGNEGDGMRRLTREHCDMLVSIP------------- 218
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLL 564
F VES+NVSV+AG++L
Sbjct: 219 ---------------MFGTVESMNVSVSAGMVL 236
>sp|Q9AGT0|TRMHL_STAAE Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain Newman) GN=NWMN_0494 PE=3 SV=1
Length = 248
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q5HIE3|TRMHL_STAAC Putative TrmH family tRNA/rRNA methyltransferase OS=Staphylococcus
aureus (strain COL) GN=SACOL0578 PE=3 SV=1
Length = 248
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/205 (26%), Positives = 102/205 (49%), Gaps = 12/205 (5%)
Query: 314 LYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDA 373
+ +QEG+ K+ ++LK A++ I ++ K L+ + N PHQG+
Sbjct: 25 ILIQEGIK----------KQQINEILKNAKDQKIIVQTVPKSKLDFL-ANAPHQGVAALI 73
Query: 374 SPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAP 433
+P E + +++ + LD + DP NLG+I+R+A G GV++ + S
Sbjct: 74 APYEYADFDQFLKQQKEKEGLLTVLILDGLEDPHNLGSILRTADATGVDGVIIPKRRSVT 133
Query: 434 LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI 493
L+ V+KAS+G++E + + N+ + + +NG+ V G+ ++ A +
Sbjct: 134 LTQTVAKASTGAIEHVPVIRVTNLAKTIDELKDNGFWV-AGTEANNATDYRNLEADMSLA 192
Query: 494 LVLGSEGTGLRPLVERSCTHLVRIP 518
+V+GSEG G+ LV C ++IP
Sbjct: 193 IVIGSEGQGMSRLVSDKCDFYIKIP 217
>sp|Q6LM40|RLMB_PHOPR 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Photobacterium
profundum GN=rlmB PE=3 SV=1
Length = 245
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 74/277 (26%), Positives = 123/277 (44%), Gaps = 45/277 (16%)
Query: 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET 352
G++ V VLA + E + L + ++D + +L +++GI+I+
Sbjct: 8 GIHAVKAVLATDPVRLIEVFVL------------KDRQDDR-LMPLLTELKDLGITIQHA 54
Query: 353 SKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAI 412
+ L+ HQG++ P + + +LD I + + L + LD VTDP NLGA
Sbjct: 55 GRKALDDKAKGASHQGIIARVKPAKQLNEHDLDTI-LEGSENPLLLILDGVTDPHNLGAC 113
Query: 413 IRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENG-WRV 471
+R+A GA V++ +A L+ SK + G+ E+M L N+ + + + + G W V
Sbjct: 114 LRNADAAGAVAVIIPKDRAAQLTATASKVACGAAEVMPLVRVTNLARTMRALQDKGVWIV 173
Query: 472 LGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531
G+ + P +V+G+EG G+R L +C L++IP AG
Sbjct: 174 --GTAGEATHDIYHSKLTGPLAIVMGAEGEGMRRLTRETCDDLIKIP-------MAG--- 221
Query: 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+V SLNVSVA G+ L V
Sbjct: 222 ------------------SVSSLNVSVATGICLFEAV 240
>sp|Q8Y016|RLMB_RALSO 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB OS=Ralstonia
solanacearum (strain GMI1000) GN=rlmB PE=3 SV=1
Length = 249
Score = 85.1 bits (209), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/275 (29%), Positives = 116/275 (42%), Gaps = 41/275 (14%)
Query: 294 LYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETS 353
L G V A L R +Y + +N R ++ + LK AE G+ +
Sbjct: 7 LIGFHAVTARLRHDARSIDEIYFE------ANRRDRR----MQDFLKAAEAAGVRMIPAD 56
Query: 354 KHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAII 413
L + G HQG+V A L + LD + + L + LD VTDP NLGA +
Sbjct: 57 NERLRGIAGTDRHQGVVAKAEALSLAL--NLDELLDGIEGPPLLLVLDGVTDPHNLGACL 114
Query: 414 RSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473
R A GA V+ S ++ V+K +SG+ E + N+ + L + G V+G
Sbjct: 115 RVADAAGAHAVIAPKDRSVGINTTVAKVASGAAETVPYITVTNLARTLRELQQRGVWVIG 174
Query: 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDV 533
+ ++ L P LV+G+EG G+R L +C LV IP AG
Sbjct: 175 TADEAEQ-DLYRADFKGPIALVMGAEGEGMRRLTRETCDTLVSIP-------MAG----- 221
Query: 534 DADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLV 568
+VESLNVSVA+GV L V
Sbjct: 222 ----------------SVESLNVSVASGVCLFEAV 240
>sp|O51468|Y516_BORBU Uncharacterized tRNA/rRNA methyltransferase BB_0516 OS=Borrelia
burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM
4680) GN=BB_0516 PE=3 SV=1
Length = 228
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 49/241 (20%)
Query: 340 KMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISAD--------- 390
++A+ I I + ++L+ ++ N+ H+G L L++ K K + + D
Sbjct: 17 QLAKTQNIKIIRINTNELDKILKNKDHRGFAL---KLKLEKNKNVKTQTKDFENLLETFK 73
Query: 391 EDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGS---LE 447
+ + + + LDE+ DPQN GAI+R+A F V+ K SA + V + SSG+ ++
Sbjct: 74 KKENAFILLLDEIEDPQNFGAILRTAEQFSIDLVITTQKRSAKDNSTVLRTSSGASQYVK 133
Query: 448 LMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTI-LVLGSEGTGLRPL 506
M + NN + L + G+ + G + K +N+I I L+LG+EG G+ L
Sbjct: 134 KMTVTNINNTINLLKNY---GFWIYTGDI--KGQDINKIKINDKKIALILGNEGKGVHKL 188
Query: 507 VERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHH 566
++ + L+RIP T+G+ID SLNVSV+ G+L+
Sbjct: 189 IKENSDFLIRIP-------TSGKID---------------------SLNVSVSTGILIFE 220
Query: 567 L 567
+
Sbjct: 221 I 221
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 204,939,378
Number of Sequences: 539616
Number of extensions: 8482645
Number of successful extensions: 21816
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 21450
Number of HSP's gapped (non-prelim): 333
length of query: 587
length of database: 191,569,459
effective HSP length: 123
effective length of query: 464
effective length of database: 125,196,691
effective search space: 58091264624
effective search space used: 58091264624
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 64 (29.3 bits)