Query 007847
Match_columns 587
No_of_seqs 273 out of 2044
Neff 4.3
Searched_HMMs 46136
Date Thu Mar 28 16:08:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007847.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007847hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0566 SpoU rRNA methylases [ 100.0 2.8E-53 6E-58 427.3 26.3 256 258-573 3-259 (260)
2 PRK11181 23S rRNA (guanosine-2 100.0 1.9E-51 4.1E-56 410.0 24.7 241 292-572 3-243 (244)
3 PRK10864 putative methyltransf 100.0 3.3E-49 7.1E-54 411.9 28.1 238 291-572 108-345 (346)
4 TIGR00186 rRNA_methyl_3 rRNA m 100.0 5.3E-49 1.1E-53 390.4 26.3 236 292-571 2-237 (237)
5 KOG0838 RNA Methylase, SpoU fa 100.0 2.8E-39 6.2E-44 323.2 17.2 234 281-571 32-271 (271)
6 PRK11081 tRNA guanosine-2'-O-m 100.0 1.1E-35 2.5E-40 295.5 18.0 162 393-584 17-181 (229)
7 PF00588 SpoU_methylase: SpoU 100.0 1.1E-35 2.4E-40 271.2 13.3 141 395-565 1-142 (142)
8 TIGR00185 rRNA_methyl_2 rRNA m 100.0 2.9E-35 6.3E-40 275.1 16.5 146 396-572 2-148 (153)
9 PRK10358 putative rRNA methyla 100.0 2.2E-33 4.8E-38 264.4 18.3 148 396-576 2-153 (157)
10 KOG2506 SpoU rRNA Methylase fa 100.0 5.6E-32 1.2E-36 276.6 10.7 230 293-570 128-370 (371)
11 TIGR00050 rRNA_methyl_1 RNA me 100.0 6.5E-28 1.4E-32 239.9 15.8 142 396-572 4-158 (233)
12 PRK15114 tRNA (cytidine/uridin 99.9 4.3E-27 9.4E-32 235.9 16.7 143 395-570 4-159 (245)
13 PRK10433 putative RNA methyltr 99.9 1.5E-23 3.2E-28 208.9 16.0 142 396-570 3-158 (228)
14 COG0219 CspR Predicted rRNA me 99.9 1.2E-21 2.5E-26 184.5 15.4 149 396-574 3-152 (155)
15 COG0565 LasT rRNA methylase [T 99.8 1E-17 2.2E-22 168.2 14.5 141 395-569 4-158 (242)
16 KOG0839 RNA Methylase, SpoU fa 99.6 3.3E-15 7.2E-20 171.1 8.9 152 392-572 1323-1476(1477)
17 PF08032 SpoU_sub_bind: RNA 2' 99.3 7E-12 1.5E-16 102.9 7.2 75 293-378 1-75 (76)
18 PRK03958 tRNA 2'-O-methylase; 97.6 0.00051 1.1E-08 67.3 10.4 123 411-571 21-151 (176)
19 COG4080 SpoU rRNA Methylase fa 97.1 0.0051 1.1E-07 58.4 10.6 120 395-517 2-125 (147)
20 PF09936 Methyltrn_RNA_4: SAM- 95.5 0.09 2E-06 52.1 9.6 133 409-569 30-184 (185)
21 COG1303 Uncharacterized protei 95.5 0.071 1.5E-06 51.9 8.7 100 412-519 23-130 (179)
22 PRK12703 tRNA 2'-O-methylase; 93.9 0.37 8.1E-06 51.9 10.2 100 412-519 21-125 (339)
23 PRK01018 50S ribosomal protein 92.1 1.5 3.2E-05 39.1 9.7 71 292-374 16-88 (99)
24 PF01248 Ribosomal_L7Ae: Ribos 91.3 1.7 3.7E-05 37.4 9.0 69 293-373 16-86 (95)
25 PRK13600 putative ribosomal pr 90.6 2.4 5.2E-05 37.3 9.3 66 293-370 14-80 (84)
26 KOG0838 RNA Methylase, SpoU fa 90.3 0.071 1.5E-06 55.4 -0.4 124 402-571 56-194 (271)
27 PF04705 TSNR_N: Thiostrepton- 89.9 0.7 1.5E-05 42.3 5.5 99 259-381 10-108 (115)
28 PRK07283 hypothetical protein; 89.5 3.4 7.4E-05 36.7 9.5 68 293-374 19-87 (98)
29 PF09895 DUF2122: RecB-family 88.6 2.5 5.3E-05 38.8 8.1 66 450-518 21-87 (106)
30 PRK07714 hypothetical protein; 87.9 4.8 0.0001 35.7 9.4 69 293-374 19-88 (100)
31 PRK13601 putative L7Ae-like ri 87.2 6.5 0.00014 34.3 9.6 71 289-371 5-76 (82)
32 PTZ00106 60S ribosomal protein 87.1 5.9 0.00013 36.2 9.6 72 291-374 24-97 (108)
33 TIGR03677 rpl7ae 50S ribosomal 86.6 6.5 0.00014 36.1 9.7 71 293-374 27-98 (117)
34 PRK13602 putative ribosomal pr 85.4 9.4 0.0002 33.0 9.6 68 292-371 11-79 (82)
35 PRK04175 rpl7ae 50S ribosomal 85.2 7.7 0.00017 36.0 9.6 70 293-374 31-102 (122)
36 PRK06683 hypothetical protein; 84.5 11 0.00023 32.8 9.6 66 292-369 11-77 (82)
37 PRK05583 ribosomal protein L7A 83.0 11 0.00024 34.1 9.4 71 292-375 17-88 (104)
38 COG4752 Uncharacterized protei 81.4 2.5 5.5E-05 41.3 4.9 138 408-573 30-189 (190)
39 PF01994 Trm56: tRNA ribose 2' 79.6 1.6 3.5E-05 40.8 2.9 65 451-519 7-76 (120)
40 PF03465 eRF1_3: eRF1 domain 3 78.9 3.8 8.3E-05 37.3 5.0 57 293-355 22-91 (113)
41 PF04452 Methyltrans_RNA: RNA 76.3 27 0.00059 35.0 10.7 111 397-510 63-194 (225)
42 TIGR00046 RNA methyltransferas 73.2 35 0.00076 34.7 10.7 111 397-511 78-205 (240)
43 COG1385 Uncharacterized protei 72.3 13 0.00029 38.4 7.5 112 397-510 80-211 (246)
44 PRK11713 16S ribosomal RNA met 63.3 47 0.001 33.6 9.3 106 396-510 76-197 (234)
45 PTZ00222 60S ribosomal protein 57.9 57 0.0012 34.5 8.8 61 293-364 133-194 (263)
46 TIGR00111 pelota probable tran 57.3 24 0.00052 38.1 6.3 52 293-354 278-329 (351)
47 COG1358 RPL8A Ribosomal protei 53.4 82 0.0018 29.3 8.2 62 293-365 28-90 (116)
48 PF13380 CoA_binding_2: CoA bi 52.4 76 0.0017 28.8 7.8 91 336-473 17-107 (116)
49 PRK02135 hypothetical protein; 47.9 81 0.0018 32.2 7.9 115 405-570 79-197 (201)
50 PF04013 Methyltrn_RNA_2: Puta 47.5 80 0.0017 32.2 7.7 79 455-569 113-196 (199)
51 PRK04011 peptide chain release 43.2 59 0.0013 36.1 6.7 60 293-354 297-388 (411)
52 PRK09190 hypothetical protein; 41.7 1.1E+02 0.0023 31.6 7.7 67 293-372 112-185 (220)
53 TIGR03676 aRF1/eRF1 peptide ch 38.6 77 0.0017 35.1 6.7 61 293-355 289-381 (403)
54 PF14419 SPOUT_MTase_2: AF2226 33.8 1.8E+02 0.0038 29.1 7.5 105 408-518 18-148 (173)
55 TIGR00108 eRF peptide chain re 28.2 1.4E+02 0.003 33.2 6.5 61 293-355 293-385 (409)
56 COG0434 SgcQ Predicted TIM-bar 27.4 2.9E+02 0.0063 29.3 8.2 81 407-488 163-247 (263)
57 COG1537 PelA Predicted RNA-bin 24.5 1.6E+02 0.0034 32.5 6.0 58 293-355 273-330 (352)
58 PTZ00365 60S ribosomal protein 21.1 4E+02 0.0087 28.4 7.9 67 293-372 133-201 (266)
No 1
>COG0566 SpoU rRNA methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-53 Score=427.28 Aligned_cols=256 Identities=34% Similarity=0.445 Sum_probs=226.1
Q ss_pred cCCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH
Q 007847 258 RTEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK 337 (587)
Q Consensus 258 s~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~ 337 (587)
+.+|+..+.+.++ | ++.+++ ++||.|+|.+||++++ .+..+|+++... ..+.+
T Consensus 3 s~~n~~~~~~~~~----r---~~~~~~--------~~~G~~~v~~al~~~~-~i~~i~~~~~~~-----------~~~~~ 55 (260)
T COG0566 3 SPANPRVKALKKL----R---GRAGEF--------LIEGEHAVLEALASGP-KIVRILVTEGRL-----------PRFEE 55 (260)
T ss_pred CcchhhhHHHHHh----h---cccCcE--------EEeeHHHHHHHHhcCC-CceEEEEecccc-----------hhHHH
Confidence 5678888988886 1 334456 5999999999999998 699999998642 34677
Q ss_pred HHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHH
Q 007847 338 VLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAY 417 (587)
Q Consensus 338 Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~ 417 (587)
++..+...+++++.+++..|+.++++.+||||++++.+..+....++... ...+++|+||+|+||+|+|||||||+
T Consensus 56 ~~~~~~~~~~~~~~v~~~~l~~~~~~~~hqGi~a~~~~~~~~~~~~~~~~----~~~~l~lvLd~V~DP~NlGaIiRtA~ 131 (260)
T COG0566 56 LLALAAAKGIPVYVVSEAILDKLSGTENHQGIVAVVKKRRYPLLDDLLDA----EAQPLLLVLDGVTDPHNLGAIIRTAD 131 (260)
T ss_pred HHHHHHhcCCeEEEECHHHHHHHhCCCCCCeEEEEEecccccchhhhhhc----ccCCEEEEEecCcCCcchhhHHhhHH
Confidence 88888899999999999999999999999999999998876655444321 25689999999999999999999999
Q ss_pred HhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecC-HHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEE
Q 007847 418 FFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNN-MMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVL 496 (587)
Q Consensus 418 AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~n-l~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVL 496 (587)
|||+++||++.+++++++++++|+|+||+|++|++.+.| ...+++.+++.||+|||++.++ ..++++.++++|++|||
T Consensus 132 a~Gv~~Vi~~~~~~~~~~~~v~r~s~Ga~~~vp~~~~~n~~~~~~~~~~~~G~~v~~t~~~~-~~~~~~~~~~~~~aLvl 210 (260)
T COG0566 132 AFGVDGVILPKRRADPLNPKVIRASAGAAFHVPVIRVTNLARTLLELLKEAGFWVVATSLDG-EVDLYETDLPKKTALVL 210 (260)
T ss_pred HhCCCEEEECCCccCCccceeEEecCChheeceeEEEeccHHHHHHHHHHcCeEEEEECCCC-CcchhhccccCCEEEEE
Confidence 999999999999999999999999999999999999995 5567666777999999999864 78899999999999999
Q ss_pred cCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCccC
Q 007847 497 GSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQVS 573 (587)
Q Consensus 497 GnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~~ 573 (587)
||||.|||+++++.||++|+|||. |.++|||||||+||+|||+.||+..
T Consensus 211 G~Eg~Gls~~~~~~~D~~v~IPm~----------------------------G~v~SLNVsvAagI~Lye~~rq~~~ 259 (260)
T COG0566 211 GNEGEGLSRLLLEHADQLVRIPMA----------------------------GKVESLNVSVAAGILLYEARRQRRA 259 (260)
T ss_pred CCCCCCcCHHHHhhCCEEEEecCC----------------------------CCcchhHHHHHHHHHHHHHHHhhcC
Confidence 999999999999999999999995 4899999999999999999999864
No 2
>PRK11181 23S rRNA (guanosine-2'-O-)-methyltransferase; Provisional
Probab=100.00 E-value=1.9e-51 Score=409.96 Aligned_cols=241 Identities=29% Similarity=0.424 Sum_probs=209.9
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEE
Q 007847 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++|||.|+|.+||+++.+.+..||++++.. ...+.++++.+++.+++++.+++++|++++++.+||||+|
T Consensus 3 ~~i~G~~~v~eal~~~~~~~~~l~~~~~~~----------~~~~~~~~~~~~~~~i~~~~v~~~~l~~ls~~~~~qGv~a 72 (244)
T PRK11181 3 EIIYGIHAVQALLERAPERFIEVFVLKGRE----------DKRLLPLINELEAQGIVIQLANRQTLDEKAEGAVHQGIIA 72 (244)
T ss_pred cEEEehHHHHHHHhCCCCceeEEEEECCCc----------chHHHHHHHHHHHcCCcEEEeCHHHHhhhhcCCCCceEEE
Confidence 579999999999987666799999986531 1235677888888999999999999999999999999999
Q ss_pred EecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeE
Q 007847 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL 451 (587)
Q Consensus 372 ~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv 451 (587)
++.++...+..++.... .....+++|+||+|+||+|+|+|+|||++||+++||++++++++++|+++|+|+||.+++|+
T Consensus 73 ~~~~~~~~~~~~~~~~~-~~~~~~~~lvLd~v~dp~NlGai~Rta~a~G~~~vi~~~~~~~~~~~~~~r~s~Ga~~~l~~ 151 (244)
T PRK11181 73 RVKPGRQLQENDLPDLL-ASLEQPFLLILDGVTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAETVPL 151 (244)
T ss_pred EEecccccchhhHHHHH-hcCCCCEEEEEcCCCCcchHHHHHHHHHHcCCCEEEECCCCCCCCCCceEEecCCHHHcCeE
Confidence 99865432222222111 11245799999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCccc
Q 007847 452 RYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531 (587)
Q Consensus 452 ~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~ 531 (587)
+.+.++.++++.|++.||+|+|++.. +..++.+.++++|++||||||+.|||+++++.||..|+|||.
T Consensus 152 ~~~~~~~~~l~~l~~~g~~i~~t~~~-~~~~~~~~~~~~~~alv~G~E~~Gls~~~~~~~d~~v~IPm~----------- 219 (244)
T PRK11181 152 IRVTNLARTMRMLQEKNIWIVGTAGE-ADHTLYQSKLTGPLALVMGAEGEGMRRLTREHCDELISIPMA----------- 219 (244)
T ss_pred EEcCCHHHHHHHHHHCCCEEEEEeCC-CCcchhhcCCCCCEEEEECCCCCCcCHHHHHhCCEEEEEcCC-----------
Confidence 99999999999999999999998864 456788889999999999999999999999999999999995
Q ss_pred ccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007847 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 532 ~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
|.++|||||||+||+|||+.||+.
T Consensus 220 -----------------g~~~SLNvsvAaaI~lye~~rqr~ 243 (244)
T PRK11181 220 -----------------GSVSSLNVSVATGICLFEAVRQRS 243 (244)
T ss_pred -----------------CCCceeeHHHHHHHHHHHHHHhhc
Confidence 379999999999999999999864
No 3
>PRK10864 putative methyltransferase; Provisional
Probab=100.00 E-value=3.3e-49 Score=411.92 Aligned_cols=238 Identities=24% Similarity=0.339 Sum_probs=209.5
Q ss_pred cCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEE
Q 007847 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 291 ~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVV 370 (587)
..+|||.|+|.|||+++++.|.+||+.+... +.+.+|++++...+++++.|++++|++|+++.+||||+
T Consensus 108 ~~~I~G~~aV~ealk~~~~~i~~l~~~~~~~-----------~~~~~il~~~~~~~~~v~~V~~~~l~kls~~~~hqGV~ 176 (346)
T PRK10864 108 ETRVYGENACQALFQSRPEAIVRAWFIQSVT-----------PRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVC 176 (346)
T ss_pred CcEEEEHHHHHHHHhCCCCceeEEEEecCcc-----------HHHHHHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEE
Confidence 3479999999999998777799999987531 24677888888889999999999999999999999999
Q ss_pred EEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEe
Q 007847 371 LDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELME 450 (587)
Q Consensus 371 a~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lp 450 (587)
|++.++...++.++.. ...+.+++|+||+|+||+|||+|+|||++||+++||++.. +++++++++|+|+|++|++|
T Consensus 177 A~v~~~~~~~l~~~l~---~~~~~~~vlvLd~I~DP~NlGaIiRTA~afGv~~Vil~~~-~~~~~~kvvRaS~Ga~~~v~ 252 (346)
T PRK10864 177 FLIKKRNGTDVQQWLA---QAGAQDCVLALEDVGNPHNLGGIMRSCAHFGVKGVVVQDA-ALLESGAAIRTAEGGAEHVQ 252 (346)
T ss_pred EEEeCCCCCCHHHHhh---ccccCCeEEEEeCCCCCCcHHHHHHHHHHhCCCEEEECCC-CCCCchhHHHHhcChhhcce
Confidence 9998765545444321 1123468999999999999999999999999999999864 67889999999999999999
Q ss_pred EEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcc
Q 007847 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEI 530 (587)
Q Consensus 451 v~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~ 530 (587)
++.+.|+.++|+.|+++||+||+++.. +..+|.++++++|++||||||+.||++++++.||++|+|||.
T Consensus 253 i~~~~nl~~~L~~lk~~G~~Iv~t~~~-~~~~l~~~~~~~k~aLV~GnE~~GLs~~vl~~~D~~V~IPm~---------- 321 (346)
T PRK10864 253 PITGDSFVDVLDDFRQAGYTIVTTSSH-KGTPLFKASLPAKMVLVLGQEYDGLSDAARQQGDLSVSIDGT---------- 321 (346)
T ss_pred EEEeCCHHHHHHHHHHCCCEEEEEeCC-CCcchhhcccCCCeEEEECCCCCCCCHHHHHhCCEEEEECCC----------
Confidence 999999999999999999999998864 347899999999999999999999999999999999999995
Q ss_pred cccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007847 531 DDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 531 ~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
|.++|||||||+||+|||+++|+.
T Consensus 322 ------------------G~veSLNVSvAaaI~LyE~~Rq~~ 345 (346)
T PRK10864 322 ------------------GNVESLNVSVATGVLLAEWWRQNK 345 (346)
T ss_pred ------------------CCCCCeEHHHHHHHHHHHHHHhhc
Confidence 379999999999999999999863
No 4
>TIGR00186 rRNA_methyl_3 rRNA methylase, putative, group 3. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=5.3e-49 Score=390.43 Aligned_cols=236 Identities=34% Similarity=0.594 Sum_probs=203.9
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEE
Q 007847 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++|||.|+|.|||+++. ++|+..... .+...++++++++.+++++.+++++|++|+++.+||||++
T Consensus 2 ~~i~G~~~v~eal~~~~----~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~v~~~~l~~l~~~~~~qGv~a 67 (237)
T TIGR00186 2 EYLYGKNAVLEALLNQQ----RVFILKGLE----------SKRLKKLIQLAKKQGINIQLVDRQKLDQLTKGGNHQGIAA 67 (237)
T ss_pred cEEEehHHHHHHHhCCC----EEEEEecCc----------chHHHHHHHHHHHcCCcEEEeCHHHHHHHhCCCCCCeEEE
Confidence 47999999999999883 566654321 1234567888888999999999999999999999999999
Q ss_pred EecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeE
Q 007847 372 DASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMEL 451 (587)
Q Consensus 372 ~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv 451 (587)
++.++...++.++.... ...+.+++|+||+|+||+|+|+|+|||++||+++||+++.+++|+++++.|+|+|+++++|+
T Consensus 68 ~~~~~~~~~~~~~~~~~-~~~~~~~~lvLd~v~dp~NlGaI~Rta~afG~~~vil~~~~~~~~~~~~~r~s~Ga~~~l~~ 146 (237)
T TIGR00186 68 KVKPILYKDLNDLYKTA-KSKKQPFLLILDEITDPHNLGAILRTAEAFGVDGVILPKRRSAPLNSTVVKTSSGAVEYVPL 146 (237)
T ss_pred EEecCCCCCHHHHHHhh-hccCCCEEEEEcCCCCCccHHHHHHHHHHcCCCEEEECCCCcCCCCCceeeeeccccceeEE
Confidence 99876554444432111 11235799999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCccc
Q 007847 452 RYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEID 531 (587)
Q Consensus 452 ~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~ 531 (587)
..+.++.++++.++++||+|+|++..+. ..+.+.++++|++||||||+.||++++++.||.+|+|||.
T Consensus 147 ~~~~~~~~~l~~l~~~g~~i~~~~~~~~-~~~~~~~~~~~~~lv~GnE~~Gls~~~l~~~d~~v~IP~~----------- 214 (237)
T TIGR00186 147 ARVTNLSRTITKLKESGFWTVGTDLDAQ-DTLYQVKLTKPLALVVGNEGEGVSRLIKENCDFLIKIPMA----------- 214 (237)
T ss_pred EEeCCHHHHHHHHHHCCCEEEEEecCCC-ccccccccCCCEEEEECCCCCCcCHHHHHhCCEEEEECCC-----------
Confidence 9999999999999999999999987543 4467788899999999999999999999999999999995
Q ss_pred ccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007847 532 DVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 532 ~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
|.++|||||+|+||+|||+.||+
T Consensus 215 -----------------g~~~SLNVsvAaaI~lye~~rqr 237 (237)
T TIGR00186 215 -----------------GKVDSLNVSVAAGILLFEIKRQR 237 (237)
T ss_pred -----------------CCCCcchHHHHHHHHHHHHHhcC
Confidence 37999999999999999999985
No 5
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=100.00 E-value=2.8e-39 Score=323.15 Aligned_cols=234 Identities=49% Similarity=0.717 Sum_probs=203.1
Q ss_pred cCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhh
Q 007847 281 AAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMV 360 (587)
Q Consensus 281 age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~L 360 (587)
+.+..+|++.+|++||.++|.+||..+.|.++.+|++...++.. ..+..+++. .+..++++.|+.+
T Consensus 32 ak~~~~~~~~~e~~~G~~sv~~al~~~kR~~~~~~~~~~~~~~~--------~e~~~v~~~------~~~~~s~h~L~~~ 97 (271)
T KOG0838|consen 32 AKKLLVPNLGGESVFGTHSVLAALSNGKRDCRGLLLQSATDFRS--------TEFELVLRR------DIEAVSKHDLNSL 97 (271)
T ss_pred HHhccCCCcccceeechhhhHHHHhcccccceeeeeccccccCc--------ceeeehhhh------hhhccChhhHHHH
Confidence 55778899999999999999999999999999999987544321 123333322 5668999999999
Q ss_pred hCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHH
Q 007847 361 VGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSK 440 (587)
Q Consensus 361 sg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvR 440 (587)
+++++|||++++++ ++++||+++||+|+|+|+|+|+|||+++++++.+++.+++|.+.|
T Consensus 98 t~~r~h~g~~leas---------------------l~vylde~tDp~n~gaI~rsA~~lg~~~v~lv~~n~s~lS~~vsk 156 (271)
T KOG0838|consen 98 TDFRPHNGILLEAS---------------------LCVYLDEVTDPQNIGAIIRSAYFLGADGVLLVKGNSSPLSPVVSK 156 (271)
T ss_pred HhhccccceEEeeE---------------------EEeeccCccCCcchHHHHHhHHHhcCCceEEEeccCCCCchhHHH
Confidence 99999999997553 799999999999999999999999999999999999999999999
Q ss_pred hccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCC------CccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcE
Q 007847 441 ASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK------AVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL 514 (587)
Q Consensus 441 ASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~------a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~ 514 (587)
+|+|++|++|+.++++.++|++.++++||+++++....+ ...+..+++..|+++|+|||+.|+++.+++.||..
T Consensus 157 ss~gale~l~I~q~~~~~efl~vsvaaG~~l~~t~~~~~~~~~~~~~~l~~~~~~~Pv~lv~Gneg~Gi~~~vl~~~d~~ 236 (271)
T KOG0838|consen 157 SSAGALEVLPIRQVDNPLEFLNVSVAAGIRLHGTCSWAPASKTISAVSLKFIDPEEPVALVLGNEGAGIRPGVLELCDLR 236 (271)
T ss_pred hhhchhheeeHHHcCCHHHHHHHHHhCceEEEEeecCcCCcccccchhhhhcCCCCCeEEEecccccccChhhhhcccee
Confidence 999999999999999999999999999999999765333 45677888999999999999999999999999999
Q ss_pred EEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcCc
Q 007847 515 VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 515 V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
+.||++. .. +| .+.|+|||||||++|++|+++.++
T Consensus 237 ~si~~n~-~~-------~d--------------~~~v~SlNvSvaa~ll~~~~~~~k 271 (271)
T KOG0838|consen 237 VSIPGNG-FE-------KD--------------NGAVDSLNVSVAAGLLLYHFLNEK 271 (271)
T ss_pred EecCCCc-cc-------cC--------------CcceeeccchHHHHHHHHHHhhcC
Confidence 9999962 10 00 037999999999999999998763
No 6
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=100.00 E-value=1.1e-35 Score=295.49 Aligned_cols=162 Identities=25% Similarity=0.290 Sum_probs=143.2
Q ss_pred CCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEE
Q 007847 393 QASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVL 472 (587)
Q Consensus 393 ~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vv 472 (587)
...++|+||+|+||+|+|+|+|||+|||++.|+++.... ..+++.|+|+|+.+++++..+.++.++++.+++.|+.|+
T Consensus 17 ~~~l~vvLd~V~~p~NlGAIiRta~AfGv~~V~~v~~~~--~~~~~~~~s~Ga~~wv~i~~~~~~~~~i~~lk~~g~~i~ 94 (229)
T PRK11081 17 QPDLTVCMEQVHKPHNVSAIIRTADAVGVHEVHAVWPGS--RMRTMGSTAAGSNSWVQVKTHRTIGDAVAHLKGQGMQIL 94 (229)
T ss_pred CCCeEEEEeCCCCcchHHHHHHHHHHhCCCeEEEecCCC--ccchhhhhcCCchheEEEEEeCCHHHHHHHHHhCCCEEE
Confidence 456899999999999999999999999999997764322 225678999999999999999999999999999999999
Q ss_pred EEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCC
Q 007847 473 GGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVE 552 (587)
Q Consensus 473 gts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~Ve 552 (587)
|++..++++++.++++++|++||||||+.|||+++++.||+.|+|||. |.++
T Consensus 95 at~~~~~a~~l~~~d~~~p~alV~GnE~~GlS~e~l~~~D~~v~IPM~----------------------------G~v~ 146 (229)
T PRK11081 95 ATHLSDTAVDFREIDYTRPTCILMGQEKTGISQEALALADQDIIIPMI----------------------------GMVQ 146 (229)
T ss_pred EEeCCCCCccHhHhcccCCeEEEECCCCCCCCHHHHhcCCCEEEEeCC----------------------------CCCC
Confidence 999877788999999999999999999999999999999999999995 3799
Q ss_pred cccHHHHHHHHHHHHHcCccCCCCc---cCCCccc
Q 007847 553 SLNVSVAAGVLLHHLVGHQVSNNSH---IEDSSTA 584 (587)
Q Consensus 553 SLNVSVAAgIlLYEl~rqr~~~~~~---~~~~s~~ 584 (587)
|||||||+||+|||+.||+....-+ ...++++
T Consensus 147 SLNVSvAaaIiLyE~~Rqr~~~g~y~~~~~~l~~~ 181 (229)
T PRK11081 147 SLNVSVASALILYEAQRQRQNAGMYLRENSMLPEE 181 (229)
T ss_pred ceeHHHHHHHHHHHHHHhhccCCCcCcCCCCCCHH
Confidence 9999999999999999998876432 3445543
No 7
>PF00588 SpoU_methylase: SpoU rRNA Methylase family; InterPro: IPR001537 The spoU gene of Escherichia coli codes for a protein that shows strong similarities to previously characterised 2'-O-methyltransferases [, ]. The Pet56 protein of Saccharomyces cerevisiae has been shown to be required for ribose methylation at a universally conserved nucleotide in the peptidyl transferase centre of the mitochondrial large ribosomal RNA (21S rRNA). Cells reduced in this activity were deficient in formation of functional large subunits of the mitochondrial ribosome. The Pet56 protein catalyzes the site-specific formation of 2'-O-methylguanosine on in vitro transcripts of both mitochondrial 21S rRNA and E. coli 23S rRNA providing evidence for an essential modified nucleotide in rRNA [].; GO: 0003723 RNA binding, 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 3N4J_A 3N4K_A 1IPA_A 3ONP_A 3NK6_A 3NK7_A 3IC6_A 1GZ0_D 1MXI_A 1J85_A ....
Probab=100.00 E-value=1.1e-35 Score=271.17 Aligned_cols=141 Identities=40% Similarity=0.574 Sum_probs=126.4
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEcc-CCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEE
Q 007847 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCA-KNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~-~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvg 473 (587)
+++|+||+|+||+|+|+|+|||++||+++|+++. ++.+++++++.|+|+|+.+++|+..++++.++++.+++.||++++
T Consensus 1 ~l~vvl~~~~~p~NlG~i~Rta~afG~~~v~l~~~~~~~~~~~~~~r~s~g~~~~~~~~~~~~~~~~l~~~~~~g~~i~~ 80 (142)
T PF00588_consen 1 MLIVVLDNVQDPGNLGAIIRTAAAFGVDGVILVGPRCADPYNPKVLRASAGAHEHLPIRRVDDLEEALKDLKENGYTIVA 80 (142)
T ss_dssp SEEEEEES-SSHHHHHHHHHHHHHTTESEEEEESSSSSTTTSHHHHHHTTTGHHCSHEEEESSHHHHHHHHHHTTEEEEE
T ss_pred CEEEEEeCCCCcCcHHHHHHHHHHhCCchhheeccccccccccccccccCChhhhhheeeeehhhhhcccccccccccce
Confidence 5899999999999999999999999999999987 556799999999999999999999999999999999999999999
Q ss_pred EecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCc
Q 007847 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVES 553 (587)
Q Consensus 474 ts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeS 553 (587)
++. ++.++.+++++++++||||||+.|||+++++.||++|+|||. +.++|
T Consensus 81 ~~~--~~~~~~~~~~~~~~~lv~G~E~~Gls~~~~~~~d~~v~IP~~----------------------------~~~~S 130 (142)
T PF00588_consen 81 TSP--GATPLYELDFPKKVALVFGNESRGLSEEVLELCDHRVSIPMY----------------------------GGVDS 130 (142)
T ss_dssp EST--TSCEGGGSHTTSSEEEEEEBTTTBS-HHHHHTSSEEEE---S----------------------------TTSSS
T ss_pred eee--ccccccccccccceEEEEcCcCCCCCcccccccceEEEEcCC----------------------------CCCCe
Confidence 887 567888999999999999999999999999999999999995 37899
Q ss_pred ccHHHHHHHHHH
Q 007847 554 LNVSVAAGVLLH 565 (587)
Q Consensus 554 LNVSVAAgIlLY 565 (587)
||||+|++|+||
T Consensus 131 LNva~A~~I~ly 142 (142)
T PF00588_consen 131 LNVAVAAAIALY 142 (142)
T ss_dssp --HHHHHHHHHH
T ss_pred eEHHHHHHHHHC
Confidence 999999999998
No 8
>TIGR00185 rRNA_methyl_2 rRNA methylase, putative, group 2. this is part of the trmH (spoU) family of rRNA methylases
Probab=100.00 E-value=2.9e-35 Score=275.14 Aligned_cols=146 Identities=19% Similarity=0.189 Sum_probs=131.7
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEe
Q 007847 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475 (587)
Q Consensus 396 l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts 475 (587)
+-|+||+|+||+|+|+|+|||++||+++||+.+++.++.++++.|+|+|+++++|++.+.|+.++++.+++.| +++++
T Consensus 2 ~~vvL~~v~dP~NlG~iiRta~afGv~~vi~~~~~~~~~~~~~~ra~~~~~~~~~~~~~~~~~~~l~~l~~~g--v~~~~ 79 (153)
T TIGR00185 2 LNIVLYEPEIPPNTGNIARTCAATGTRLHLIEPLGFFLDDKRLKRAGLDYWEFVQLFYHKSWEEFLEAEKPQK--LFALT 79 (153)
T ss_pred eEEEEcCCCCCChHHHHHHHHHHhCCEEEEECCCCCCCccHHHHhhccchHhcCCeEEeCCHHHHHHhCcCCC--EEEEe
Confidence 4689999999999999999999999999988766666677888899999999999999999999999999888 66666
Q ss_pred cCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhC-CcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcc
Q 007847 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSC-THLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESL 554 (587)
Q Consensus 476 ~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~c-D~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSL 554 (587)
.. +..++.+++++.|.+||||||+.||++++++.| |+.|+|||. +.++||
T Consensus 80 ~~-~~~~~~~~~~~~~~alv~GnE~~Gls~~~l~~~~d~~v~IP~~----------------------------g~~~SL 130 (153)
T TIGR00185 80 KK-GTPAHSQVTYKLGDYLMFGPETRGLPQSILDNMMEQKIRIPMT----------------------------NNVRSL 130 (153)
T ss_pred CC-CCCcceeeccCCCCEEEECCCCCCCCHHHHhhCCCCEEEEcCC----------------------------CCCcch
Confidence 54 456778888899999999999999999999999 999999995 379999
Q ss_pred cHHHHHHHHHHHHHcCcc
Q 007847 555 NVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 555 NVSVAAgIlLYEl~rqr~ 572 (587)
|||||++|+|||+.+|+.
T Consensus 131 NvavA~aI~lye~~rq~~ 148 (153)
T TIGR00185 131 NLSNSVAIVVYEAWRQLG 148 (153)
T ss_pred HHHHHHHHHHHHHHHccC
Confidence 999999999999999975
No 9
>PRK10358 putative rRNA methylase; Provisional
Probab=100.00 E-value=2.2e-33 Score=264.41 Aligned_cols=148 Identities=19% Similarity=0.153 Sum_probs=124.9
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeE--EeEEEecCHHHHHHHhhhcCcEEEE
Q 007847 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLEL--MELRYCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 396 l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~--lpv~~~~nl~~~L~~Lke~G~~Vvg 473 (587)
+.||||+|+||||+|||+|||++||++.||+.+ ++++|++|++|++ |+.++ +++....++.++++.+ .++++++
T Consensus 2 ~~ivL~~~~dPgNlGti~Rta~a~G~~~viv~~-~~d~~~~k~~raa-g~~~~~~~~~~~~~~l~~~l~~~--~~~~v~~ 77 (157)
T PRK10358 2 LNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEP-MGFAWDDKRLRRA-GLDYHEFTAVTRHHDYAAFLEAE--NPQRLFA 77 (157)
T ss_pred eEEEEeCCCCcChHHHHHHHHHHhCCEEEEECC-CCCCCChHHHHhc-ccccccceeeEEcCCHHHHHHhC--CCceEEE
Confidence 569999999999999999999999999888754 6799999999974 55554 4566678999888743 3588999
Q ss_pred EecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHh--CCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCC
Q 007847 474 GSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS--CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAV 551 (587)
Q Consensus 474 ts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~--cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~V 551 (587)
++.. +...+.+.++.++.+||||||++||++++++. ||+.|+|||. +.+
T Consensus 78 ~~~~-~~~~~~~~~~~~~~~lvfGnE~~GLs~~~~~~~~~d~~v~IPm~----------------------------~~~ 128 (157)
T PRK10358 78 LTTK-GTPAHSAVSYQDGDYLMFGPETRGLPASILDALPAEQKIRIPMM----------------------------PDS 128 (157)
T ss_pred EeCC-CCCCccccccCCCcEEEECCCCCCCCHHHHhcCCCCeEEEEcCC----------------------------CCC
Confidence 8874 34455666778899999999999999999998 8999999995 379
Q ss_pred CcccHHHHHHHHHHHHHcCccCCCC
Q 007847 552 ESLNVSVAAGVLLHHLVGHQVSNNS 576 (587)
Q Consensus 552 eSLNVSVAAgIlLYEl~rqr~~~~~ 576 (587)
+|||||+|++|+|||+.||+..+..
T Consensus 129 eSLNvAvA~aI~lyE~~rqr~~~~~ 153 (157)
T PRK10358 129 RSMNLSNAVSVVVYEAWRQLGYPGA 153 (157)
T ss_pred ccchHHHHHHHHHHHHHHhhcCCcc
Confidence 9999999999999999999875543
No 10
>KOG2506 consensus SpoU rRNA Methylase family protein [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=5.6e-32 Score=276.64 Aligned_cols=230 Identities=22% Similarity=0.239 Sum_probs=168.6
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~ 372 (587)
+++|++++.+||+.+-. -+-++++....+ . ....-.+.|++|+.|...+|.+.++-.+++|+.+.
T Consensus 128 i~egRrliqdaLk~g~~-~ev~~Fs~~~ql-----------a---~~p~e~e~g~~i~kVks~d~K~wSsLvSP~svmaI 192 (371)
T KOG2506|consen 128 ISEGRRLIQDALKGGVH-REVCMFSTNKQL-----------A---TTPIECEAGIRIVKVKSLDMKKWSSLVSPESVMAI 192 (371)
T ss_pred cccchhhHHHHhhcccc-ceEEEeeccccc-----------c---ccChhhhcCeeEEeccHHHHHHHhcccCCcchhhh
Confidence 58999999999999863 344555432110 0 11111278999999999999999999999999998
Q ss_pred ecccccccccccCccc-c----cccCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCcee
Q 007847 373 ASPLEMVKIKELDPIS-A----DEDQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLE 447 (587)
Q Consensus 373 a~pl~~~~i~eL~~~~-~----~~~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle 447 (587)
+.++-. ..++... . -...-|+.||+|+|+||+|||+|+|||++||+++|+++.+|+|||++|++|+++||.|
T Consensus 193 f~~P~d---~hl~k~~a~~q~~~s~~lp~~lvcdnirdpgnlgti~rsaaa~~cs~v~lt~gccdpwe~kalrag~ga~f 269 (371)
T KOG2506|consen 193 FLMPID---LHLDKDIATDQNKWSPSLPRVLVCDNIRDPGNLGTIVRSAAAFNCSGVFLTPGCCDPWEDKALRAGRGASF 269 (371)
T ss_pred ccCcch---hchhhhHHHHHhccCCCCCeEEEeccCCCCcchHHHHHHHhhCCCcceeecCCcCCccchhhhhccCCcce
Confidence 765421 1121110 0 1234689999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEecCHHHHHHHh---hhcCcEEEEEecCCCCccCCC-C----CCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007847 448 LMELRYCNNMMQFLVSS---AENGWRVLGGSVSSKAVPLNE-I----PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 448 ~lpv~~~~nl~~~L~~L---ke~G~~Vvgts~~~~a~~L~e-v----~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
.+||+.. ||...--.. ......++.++....-.+.+. + ....|.+||+|.|++|+|++.++.| .+|-|||
T Consensus 270 r~pi~~~-~w~~l~l~~pp~~ad~c~~~~a~t~qr~~~~~k~~e~ad~~~ap~~liigge~~gvseea~~~~-~lvgip~ 347 (371)
T KOG2506|consen 270 RLPIVSG-NWNHLKLLEPPFQADLCAGHPATTTQRLKPVSKLVEFADSLAAPLCLIIGGEGNGVSEEARKVC-VLVGIPM 347 (371)
T ss_pred ecceecC-chhhhhccCChhHHhhhcCchHhhhhhhccchhhhHHHhhccCceEEEEccCcCCcCHHHHHHH-HHcCCcc
Confidence 9999975 665422111 111122222221111111111 1 1348999999999999999999999 5678999
Q ss_pred CCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHcC
Q 007847 520 NIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVGH 570 (587)
Q Consensus 520 ~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~rq 570 (587)
. +.+||||||+|++|+|||+.++
T Consensus 348 a----------------------------~g~dslnva~a~~illfel~r~ 370 (371)
T KOG2506|consen 348 A----------------------------GGFDSLNVAVAGGILLFELQRL 370 (371)
T ss_pred c----------------------------CCcchhhhHHHHHHHHHHHhhc
Confidence 5 3799999999999999999875
No 11
>TIGR00050 rRNA_methyl_1 RNA methyltransferase, TrmH family, group 1. This is part of the trmH (spoU) family of S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases, and is now characterized, in E. coli, as a tRNA:Cm32/Um32 methyltransferase. It may be named TrMet(Xm32), or TrmJ, according to the nomenclature style chosen
Probab=99.95 E-value=6.5e-28 Score=239.91 Aligned_cols=142 Identities=24% Similarity=0.297 Sum_probs=121.3
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEE-ecCHHHHHHHhhhcCcEEEEE
Q 007847 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY-CNNMMQFLVSSAENGWRVLGG 474 (587)
Q Consensus 396 l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~-~~nl~~~L~~Lke~G~~Vvgt 474 (587)
+.|||++|+||+|+|+|+|+|.+||++.++|+.++++ +++++.|+|+||.++++... ++++.++++.+ + .|+|+
T Consensus 4 i~vvL~~~~~p~NiGaiaR~~~~fG~~~l~lv~p~~~-~~~~a~~~a~ga~~~l~~~~v~~~l~eal~~~---~-~vv~t 78 (233)
T TIGR00050 4 IRIVLVEPSHSGNIGSIARAMKNMGLTELCLVNPKSH-LEEEAYALAAGARDILDNAKVVDDLDEALDDC---D-LVVGT 78 (233)
T ss_pred eEEEEECCCCCCCHHHHHHHHHhCCCCEEEEeCCCcC-CCHHHHHHhCChHHhhccCEEECCHHHHHhcC---C-EEEEE
Confidence 6799999999999999999999999999999988777 79999999999999999754 57888888643 3 58888
Q ss_pred ecCCCCccCCCC------------CCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCc
Q 007847 475 SVSSKAVPLNEI------------PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSA 542 (587)
Q Consensus 475 s~~~~a~~L~ev------------~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~ 542 (587)
+.. ...+... ++..|++||||||+.||+++.++.||.+|+|||.
T Consensus 79 t~~--~~~~~~~~~~~~~~~~~~~~~~~~~aLvFG~E~~GL~~~~l~~cd~~v~IP~~---------------------- 134 (233)
T TIGR00050 79 SAR--SRNLQRPLLTPRELAPKLVAYKGKIAIVFGREDSGLTNEELLKCHVLVSIPTS---------------------- 134 (233)
T ss_pred CCC--cCCCCCCcCCHHHHHHHHHhhcCCEEEEECCCCCCCCHHHHHhCCEEEEecCC----------------------
Confidence 753 2233222 2457899999999999999999999999999995
Q ss_pred cccccCCCCCcccHHHHHHHHHHHHHcCcc
Q 007847 543 EQFQSFMAVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 543 ~~f~~~g~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
+.++|||||+|++|+|||+.++..
T Consensus 135 ------~~~~SLNla~Av~I~lye~~~~~~ 158 (233)
T TIGR00050 135 ------EEYPSLNLSHAVAVILYELRMAFL 158 (233)
T ss_pred ------CCCCeeeHHHHHHHHHHHHHHhhc
Confidence 378999999999999999988643
No 12
>PRK15114 tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional
Probab=99.95 E-value=4.3e-27 Score=235.94 Aligned_cols=143 Identities=22% Similarity=0.300 Sum_probs=117.8
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEE-ecCHHHHHHHhhhcCcEEEE
Q 007847 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRY-CNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~-~~nl~~~L~~Lke~G~~Vvg 473 (587)
.+.|||++++||+|+|+|+|+|.+||+++++|+.++++++++ ++++|+||.+.++... ++++.++++.+ ..|||
T Consensus 4 ~i~vVLv~~~~pgNiGaiaRa~~~fG~~~l~lv~p~~~~~~~-a~~~a~GA~~~l~~a~i~~~l~eal~~~----~~vva 78 (245)
T PRK15114 4 NIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDSQ-AIALAAGASDVIGNATIVDTLDEALAGC----SLVVG 78 (245)
T ss_pred CeEEEEeCCCCCCcHHHHHHHHHhcCCCEEEEeCCCCCCcCH-HHHHcCCchhhcccCeEecCHHHHHhcC----CEEEE
Confidence 378999999999999999999999999999999988888776 7899999997654333 46777777543 36999
Q ss_pred EecCCCCccCC------------CCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCC
Q 007847 474 GSVSSKAVPLN------------EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGS 541 (587)
Q Consensus 474 ts~~~~a~~L~------------ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~ 541 (587)
++......... ...+..|++||||||+.||+++.++.||.+|+|||.
T Consensus 79 tt~r~~~~~~~~~~~~~~~~~~~~~~~~~~~alVFG~E~~GLs~e~l~~cd~~v~IP~~--------------------- 137 (245)
T PRK15114 79 TSARSRTLPWPMLDPRECGLKSVAEAANAPVALVFGRERVGLTNDELQKCHYHVAIAAN--------------------- 137 (245)
T ss_pred EcCCccCCcccccCHHHHHHHHHhhccCCCEEEEECCCCCCCCHHHHHhCCeEEEecCC---------------------
Confidence 88643322111 123567899999999999999999999999999996
Q ss_pred ccccccCCCCCcccHHHHHHHHHHHHHcC
Q 007847 542 AEQFQSFMAVESLNVSVAAGVLLHHLVGH 570 (587)
Q Consensus 542 ~~~f~~~g~VeSLNVSVAAgIlLYEl~rq 570 (587)
+.++|||||+|++|+|||+.+.
T Consensus 138 -------~~~~SLNla~AvaI~lYE~~~~ 159 (245)
T PRK15114 138 -------PEYSSLNLAMAVQVIAYEVRMA 159 (245)
T ss_pred -------CCCCcccHHHHHHHHHHHHHHH
Confidence 3799999999999999998764
No 13
>PRK10433 putative RNA methyltransferase; Provisional
Probab=99.91 E-value=1.5e-23 Score=208.94 Aligned_cols=142 Identities=20% Similarity=0.191 Sum_probs=116.4
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEE-EecCHHHHHHHhhhcCcEEEEE
Q 007847 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR-YCNNMMQFLVSSAENGWRVLGG 474 (587)
Q Consensus 396 l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~-~~~nl~~~L~~Lke~G~~Vvgt 474 (587)
+.|||++++||+|+|+|+|++.+||++.++|+.+... .++.+.+.++||..+++.. .++++.+++..+ + .++|+
T Consensus 3 i~vVLv~p~~p~NiGaiaRam~nfG~~~L~lV~p~~~-~~~~a~~~A~gA~d~L~~a~v~~tL~eAl~d~---~-~vigt 77 (228)
T PRK10433 3 LTIILVAPARAENVGAAARAMKTMGFSELRIVDSQAH-LEPAARWVAHGSGDILDNAKVFDTLAEALHDV---D-FTVAT 77 (228)
T ss_pred eEEEEEcCCCCccHHHHHHHHHHCCCCEEEEeCCCCC-CcHHHHHHhccHHHHhcCceEECCHHHHHHhC---C-eEEEE
Confidence 6799999999999999999999999999999876654 3778889999999998855 467999998764 4 56776
Q ss_pred ecCCCCc--cCCC----------C-CCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCC
Q 007847 475 SVSSKAV--PLNE----------I-PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGS 541 (587)
Q Consensus 475 s~~~~a~--~L~e----------v-~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~ 541 (587)
+...... ++.. . .+.++++||||+|+.||+.+.++.||.+|+|||+
T Consensus 78 tar~~~~~~~~~~p~~~~~~l~~~~~~~~~~alvfG~E~~Gl~~~~l~~c~~~~~IP~~--------------------- 136 (228)
T PRK10433 78 TARSRAKFHYYATPAELVPLLEEKSSWMSHAALVFGREDSGLTNEELALADVLTGVPMA--------------------- 136 (228)
T ss_pred ccCCCCCCCcccCHHHHHHHHHhhhcccCCEEEEECCCCCCCCHHHHHhCCcEEEecCC---------------------
Confidence 6532221 1110 1 1347899999999999999999999999999996
Q ss_pred ccccccCCCCCcccHHHHHHHHHHHHHcC
Q 007847 542 AEQFQSFMAVESLNVSVAAGVLLHHLVGH 570 (587)
Q Consensus 542 ~~~f~~~g~VeSLNVSVAAgIlLYEl~rq 570 (587)
+.++|||||+|++|+|||+...
T Consensus 137 -------~~~~SLNla~A~~i~~ye~~~~ 158 (228)
T PRK10433 137 -------ADYPSLNLGQAVMVYCYQLAGL 158 (228)
T ss_pred -------CCCcceeHHHHHHHHHHHHHHh
Confidence 3789999999999999998764
No 14
>COG0219 CspR Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.2e-21 Score=184.50 Aligned_cols=149 Identities=21% Similarity=0.216 Sum_probs=129.8
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEe
Q 007847 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGS 475 (587)
Q Consensus 396 l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts 475 (587)
+-|||.+++-|+|.|+|+|+|+++|+...++-+-+.+.-+..+.||++-.++.+.+...+++.+|++..+. |-++++.+
T Consensus 3 ~~IvL~~PeIP~NTGNI~R~ca~tga~LhlI~PlGF~l~dk~lkRAGlDY~~~~~l~~h~s~e~fl~~~~~-~~rl~~~t 81 (155)
T COG0219 3 LNIVLYQPEIPPNTGNIIRTCAATGAELHLIEPLGFDLDDKRLKRAGLDYHEKASLTEHDSLEAFLEAEPI-GGRLFALT 81 (155)
T ss_pred cEEEEECCCCCCchhHHHHHHHhcCCeEEEEccCCCccchhhhhhcccchHhhcceEEeCCHHHHHhhccC-CceEEEEE
Confidence 57999999999999999999999999998876555455556777899999999999999999999998876 78899887
Q ss_pred cCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcE-EEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcc
Q 007847 476 VSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHL-VRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESL 554 (587)
Q Consensus 476 ~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~-V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSL 554 (587)
.. +..++.++.+..+-+|+||.|..||++++++..... |+|||. ..+.||
T Consensus 82 t~-~~~~~~~~~f~~~d~llFG~Es~GLP~~i~~~~~~~~irIPm~----------------------------~~~RSL 132 (155)
T COG0219 82 TK-GTTTYTDVSFQKGDYLLFGPESRGLPEEILDAAPDRCIRIPMR----------------------------PGVRSL 132 (155)
T ss_pred ec-cccccccccCCCCCEEEECCCCCCCCHHHHHhCccceEEeccC----------------------------CCCccc
Confidence 54 567778888888889999999999999998777655 999996 157899
Q ss_pred cHHHHHHHHHHHHHcCccCC
Q 007847 555 NVSVAAGVLLHHLVGHQVSN 574 (587)
Q Consensus 555 NVSVAAgIlLYEl~rqr~~~ 574 (587)
|+|++++|++||.+||....
T Consensus 133 NLsnsvavv~yEa~RQ~~~~ 152 (155)
T COG0219 133 NLSNTVAVVLYEALRQLGFA 152 (155)
T ss_pred hHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999998765
No 15
>COG0565 LasT rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=1e-17 Score=168.15 Aligned_cols=141 Identities=26% Similarity=0.359 Sum_probs=115.8
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEE-EecCHHHHHHHhhhcCcEEEE
Q 007847 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELR-YCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~-~~~nl~~~L~~Lke~G~~Vvg 473 (587)
.+.|||.+++-|+|+|++.|.+..||.+.++|+...+. .++.+...|+||-..+.-. .++++.++|..+. .|+|
T Consensus 4 ~i~iVLVep~~~gNIG~vARaMKNfGl~eL~LV~Pr~~-~~eeA~a~A~gA~dile~A~i~~tL~eAl~d~~----~v~a 78 (242)
T COG0565 4 NIRIVLVEPSHPGNIGSVARAMKNFGLSELRLVNPRAG-LDEEARALAAGARDILENAKIVDTLEEALADCD----LVVA 78 (242)
T ss_pred ccEEEEEcCCCCccHHHHHHHHHhCCcceEEEECCCCC-CCHHHHHHhccchhhhccCeeecCHHHHhcCCC----EEEE
Confidence 36799999999999999999999999999999987766 6888899999999877643 4578888886543 6788
Q ss_pred EecCCCCccCC-------------CCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCC
Q 007847 474 GSVSSKAVPLN-------------EIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHG 540 (587)
Q Consensus 474 ts~~~~a~~L~-------------ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~ 540 (587)
|+.......-. ... ..+++||||.|..||+.+-++.||.+|+||+++
T Consensus 79 Ttar~r~~~~~~~~P~e~~~~l~~~~~-~~~vAlvFGRE~~GLtNeEl~~c~~~v~IP~~p------------------- 138 (242)
T COG0565 79 TTARSRDLLRPLRTPREAAPELLEKAK-GGKVALVFGRERVGLTNEELALCDVLVTIPANP------------------- 138 (242)
T ss_pred eccccCcccccccCHHHHHHHHHHHhc-CCCeEEEECCccCCCCHHHHHhhhEEEecCCCC-------------------
Confidence 77533221111 112 479999999999999999999999999999862
Q ss_pred CccccccCCCCCcccHHHHHHHHHHHHHc
Q 007847 541 SAEQFQSFMAVESLNVSVAAGVLLHHLVG 569 (587)
Q Consensus 541 ~~~~f~~~g~VeSLNVSVAAgIlLYEl~r 569 (587)
...|||+|.|++|+|||+.+
T Consensus 139 ---------~Y~sLNLa~AV~ii~YEl~~ 158 (242)
T COG0565 139 ---------DYPSLNLAQAVQVILYELRK 158 (242)
T ss_pred ---------ccccccHHHHHHHHHHHHHH
Confidence 67899999999999999976
No 16
>KOG0839 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=99.57 E-value=3.3e-15 Score=171.05 Aligned_cols=152 Identities=24% Similarity=0.348 Sum_probs=133.1
Q ss_pred cCCcEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEe--cCHHHHHHHhhhcCc
Q 007847 392 DQASLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYC--NNMMQFLVSSAENGW 469 (587)
Q Consensus 392 ~~~~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~--~nl~~~L~~Lke~G~ 469 (587)
+...++||--=|..|.|||.|.|||..|||+-++|..- ...-++.----|+-|-.|+|+..+ +++..|++..|.+||
T Consensus 1323 grssLIVVASLVDKppNLgGicRTcEVFgvs~LvVad~-~vi~DkQFk~lSVtAE~W~pieeVk~~~L~~fLq~kK~EGy 1401 (1477)
T KOG0839|consen 1323 GRSSLIVVASLVDKPPNLGGICRTCEVFGVSLLVVADI-KVINDKQFKNLSVTAERWMPIEEVKLDELASFLQEKKKEGY 1401 (1477)
T ss_pred CceeEEEEeecccCCCccchhhhhhhhhCcceEEEeee-eeecchhhhheeeeHHhccchhccChHHHHHHHHHhhhcCc
Confidence 45678999999999999999999999999999877432 222244444567888889998866 588999999999999
Q ss_pred EEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCC
Q 007847 470 RVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFM 549 (587)
Q Consensus 470 ~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g 549 (587)
+|+|+.-+.+++.++++-||++.+||||+|..||+-.++..-|.+|.||+. |
T Consensus 1402 TiIglEQTakSV~Ld~fqFPkKslilLG~EkEGIPvnLl~~LD~cvEIpQ~----------------------------G 1453 (1477)
T KOG0839|consen 1402 TIIGLEQTAKSVKLDNFQFPKKSLILLGTEKEGIPVNLLSELDLCVEIPQF----------------------------G 1453 (1477)
T ss_pred EEEeehhcccccccccccCCcceeEEecccccCCcHHHHHHHhHheecccc----------------------------c
Confidence 999999888899999999999999999999999999999999999999984 5
Q ss_pred CCCcccHHHHHHHHHHHHHcCcc
Q 007847 550 AVESLNVSVAAGVLLHHLVGHQV 572 (587)
Q Consensus 550 ~VeSLNVSVAAgIlLYEl~rqr~ 572 (587)
-+.||||-|++|+++||+.+|+.
T Consensus 1454 viRSLNVHVsgAl~iweYTrQqr 1476 (1477)
T KOG0839|consen 1454 VIRSLNVHVSGALIIWEYTRQQR 1476 (1477)
T ss_pred eeeeeeeehhHHHHHHHHHHHhc
Confidence 89999999999999999999964
No 17
>PF08032 SpoU_sub_bind: RNA 2'-O ribose methyltransferase substrate binding; InterPro: IPR013123 Most cellular RNAs undergo a number of post-transcriptional nucleoside modifications. While the biological role of many of these modifications is unknown, some have been shown to be necessary for cell growth or for resistance to antibiotics [, ]. One of the most common modifications is 2'O-ribose methylation catalysed by the RNA 2'O-ribose methyltransferases, a large enzyme family that transfer a methyl group from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of the backbone ribose []. This entry represents a substrate-binding domain found in a variety of bacterial and mitochondrial RNA 2'-O ribose methyltransferases. These include the bacterial enzyme RlmB, which specifically methylates the conserved nucleotide guanosine 2251 in 23S RNA, and PET56, which specifically methylates the equivalent guanosine in mitochondrial 21S RNA [, ]. This domain forms a four-stranded mixed beta sheet similar to that found in other RNA binding enzymes []. It shows considerable conformational flexibility which is thought to be important for its ability to bind RNA.; GO: 0008168 methyltransferase activity; PDB: 1GZ0_D 1IPA_A.
Probab=99.29 E-value=7e-12 Score=102.94 Aligned_cols=75 Identities=31% Similarity=0.411 Sum_probs=59.9
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLD 372 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~ 372 (587)
+|||.|+|.+||+++++ +..||++++.. .+.+.++++.+++.|++++.++++.|++|+++.+||||+|+
T Consensus 1 lieG~~~V~eaL~~~~~-i~~l~~~~~~~----------~~~~~~i~~~~~~~~i~v~~v~~~~l~~ls~~~~hQGv~a~ 69 (76)
T PF08032_consen 1 LIEGRHAVEEALKSGPR-IKKLFVTEEKA----------DKRIKEILKLAKKKGIPVYEVSKKVLDKLSDTENHQGVVAV 69 (76)
T ss_dssp EEESHHHHHHHHHCTGG-EEEEEEETT-------------CCTHHHHHHHHHCT-EEEEE-HHHHHHCTTTSS-TTEEEE
T ss_pred CEEEHHHHHHHHcCCCC-ccEEEEEcCcc----------chhHHHHHHHHHHcCCeEEEeCHHHHHHHcCCCCCCeEEEE
Confidence 59999999999999987 99999998721 12356789999999999999999999999999999999999
Q ss_pred eccccc
Q 007847 373 ASPLEM 378 (587)
Q Consensus 373 a~pl~~ 378 (587)
+.++++
T Consensus 70 v~~~~~ 75 (76)
T PF08032_consen 70 VKPPQY 75 (76)
T ss_dssp EE----
T ss_pred EeCCCC
Confidence 987654
No 18
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=97.58 E-value=0.00051 Score=67.25 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=80.6
Q ss_pred HHHHHHHHhCCCeEEEccCCCCC--CchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCC--CccCCCC
Q 007847 411 AIIRSAYFFGASGVVLCAKNSAP--LSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSK--AVPLNEI 486 (587)
Q Consensus 411 AIIRSA~AFGa~gVIL~~~~s~p--~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~--a~~L~ev 486 (587)
-+.|||-+|||++++|....-.. .-.+++. -=|+-|. +....++.++++.+++.| .++-++..+. ...+.++
T Consensus 21 hvartARafGa~~~yiv~~~~~q~~~v~~I~~-~WGg~fn--v~~~~s~~~~i~~~k~~G-~vvhLtmyga~~~~~~~~i 96 (176)
T PRK03958 21 HVGLTARALGADKIILASNDEHVKESVEDIVE-RWGGPFE--VEVTKSWKKEIREWKDGG-IVVHLTMYGENIQDVEPEI 96 (176)
T ss_pred HHHHHHHHcCCceEEEecCcHHHHHHHHHHHH-hcCCceE--EEEcCCHHHHHHHHHhCC-cEEEEEEecCCccchHHHH
Confidence 37899999999999997542111 1122222 2377766 455679999999998555 3333222211 1123333
Q ss_pred C----CCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHHHH
Q 007847 487 P----PGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAAGV 562 (587)
Q Consensus 487 ~----~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgI 562 (587)
. -.+|.+|||| +.||++++.+.||+.|.+ | ...= -|-.|+||
T Consensus 97 r~~~~~~~p~LIvvG--g~gvp~evye~aDynlgv----------g---------------------~qpH-SvrAAlAI 142 (176)
T PRK03958 97 REAHRKGEPLLIVVG--AEKVPREVYELADWNVAV----------G---------------------NQPH-SEVAALAV 142 (176)
T ss_pred HHhhccCCcEEEEEc--CCCCCHHHHhhCCEEecc----------C---------------------CCCh-HHHHHHHH
Confidence 1 1689999999 889999999999998832 1 1122 57789999
Q ss_pred HHHHHHcCc
Q 007847 563 LLHHLVGHQ 571 (587)
Q Consensus 563 lLYEl~rqr 571 (587)
+|..|+.-+
T Consensus 143 ~LDRL~~g~ 151 (176)
T PRK03958 143 FLDRLFEGK 151 (176)
T ss_pred HHHHhcCCc
Confidence 999887544
No 19
>COG4080 SpoU rRNA Methylase family enzyme [General function prediction only]
Probab=97.08 E-value=0.0051 Score=58.35 Aligned_cols=120 Identities=23% Similarity=0.145 Sum_probs=82.9
Q ss_pred cEEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEccCC-CCCCc--hhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEE
Q 007847 395 SLWVALDEVTDPQNLGAIIRSAYFFGASGVVLCAKN-SAPLS--GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRV 471 (587)
Q Consensus 395 ~l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~~~~-s~p~s--pkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~V 471 (587)
++++++.++..++-+=-+.|+|+.||++.+++++-. ++-.+ |++.|-+--.- .|+..+.++.++++-|+..-...
T Consensus 2 ev~vvlHN~~S~~rv~e~ariaygfg~k~lV~tka~g~AAQsGIp~~~kla~k~G--~~vlvf~dL~DAlevL~P~v~ll 79 (147)
T COG4080 2 EVIVVLHNVSSVQRVLEFARIAYGFGAKRLVLTKAKGSAAQSGIPEVLKLAFKLG--KPVLVFPDLDDALEVLRPDVTLL 79 (147)
T ss_pred cEEEEEecCCchHHHHHHHHHHcccCccEEEEEecccHhhhhccHHHHHHHHHhC--CcEEEehhHHHHHHhcCCceEEE
Confidence 478999999999999999999999999999997532 22222 45555432111 67888899999999998654333
Q ss_pred EEEecCCCCccCCCCC-CCCCEEEEEcCCCCCccHHHHHhCCcEEEE
Q 007847 472 LGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSCTHLVRI 517 (587)
Q Consensus 472 vgts~~~~a~~L~ev~-~~~p~aLVLGnEg~GLS~~vl~~cD~~V~I 517 (587)
++ +.+.+...++--+ ..+++++||+.=..|+++.-++.-+..++|
T Consensus 80 ~~-~~~~~ek~~dp~e~ie~~vliVf~ga~~gl~k~El~lg~~~~y~ 125 (147)
T COG4080 80 VG-SASEGEKKLDPNEKIEGRVLIVFSGAEPGLTKRELELGADLRYI 125 (147)
T ss_pred ec-CcccccccCCccccccceEEEEEecCCCCcChhhcccCCcEEEE
Confidence 43 2222222222111 224788888888889998777766777777
No 20
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=95.51 E-value=0.09 Score=52.11 Aligned_cols=133 Identities=24% Similarity=0.406 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhCCCeEEEccCCCCC--CchhHH---HhccCcee------EEe-EEEecCHHHHHHHhhhc-C--cEEEE
Q 007847 409 LGAIIRSAYFFGASGVVLCAKNSAP--LSGVVS---KASSGSLE------LME-LRYCNNMMQFLVSSAEN-G--WRVLG 473 (587)
Q Consensus 409 LGAIIRSA~AFGa~gVIL~~~~s~p--~spkvv---RASaGAle------~lp-v~~~~nl~~~L~~Lke~-G--~~Vvg 473 (587)
|=-|.|+|-.||+.+..++.+-.+. +-.+++ +...|+.+ .+. +..+.++.++++...+. | -.+++
T Consensus 30 lHDIAR~~rTYgv~~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~ 109 (185)
T PF09936_consen 30 LHDIARSARTYGVKGYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVA 109 (185)
T ss_dssp HHHHHHHHHHTT-SEEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE
T ss_pred HHhhhhhhhccCCcCEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEE
Confidence 5679999999999999876431110 011111 22233321 111 23357888888876553 3 56788
Q ss_pred EecCC--CCccCCCC-----CCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCccccc
Q 007847 474 GSVSS--KAVPLNEI-----PPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQ 546 (587)
Q Consensus 474 ts~~~--~a~~L~ev-----~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~ 546 (587)
|+... ..+++.++ .-..|++|+|| =|.||.+++++.||.++. |.. |
T Consensus 110 TsAr~~~~~is~~~lr~~l~~~~~P~LllFG-TGwGL~~ev~~~~D~iLe-PI~-------g------------------ 162 (185)
T PF09936_consen 110 TSARKYPNTISYAELRRMLEEEDRPVLLLFG-TGWGLAPEVMEQCDYILE-PIR-------G------------------ 162 (185)
T ss_dssp --SS--SS-B-HHHHHHHHHH--S-EEEEE---TT---HHHHTT-SEEB---TT-------T------------------
T ss_pred ecCcCCCCCcCHHHHHHHHhccCCeEEEEec-CCCCCCHHHHHhcCeeEc-ccc-------c------------------
Confidence 77542 22222221 24689999999 589999999999998654 543 1
Q ss_pred cCCCCCcccHHHHHHHHHHHHHc
Q 007847 547 SFMAVESLNVSVAAGVLLHHLVG 569 (587)
Q Consensus 547 ~~g~VeSLNVSVAAgIlLYEl~r 569 (587)
.+...=|-|=.|+||+|--++.
T Consensus 163 -~~~YNHLSVRsAvAIiLDRLlG 184 (185)
T PF09936_consen 163 -AGDYNHLSVRSAVAIILDRLLG 184 (185)
T ss_dssp -TSS-----HHHHHHHHHHHHTT
T ss_pred -CCCCccchHHHHHHHHHHHHcC
Confidence 1367788999999999987754
No 21
>COG1303 Uncharacterized protein conserved in archaea [Function unknown]
Probab=95.50 E-value=0.071 Score=51.94 Aligned_cols=100 Identities=18% Similarity=0.228 Sum_probs=68.8
Q ss_pred HHHHHHHhCCCeEEEccCCCCCC--c-hhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCCCC-
Q 007847 412 IIRSAYFFGASGVVLCAKNSAPL--S-GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIP- 487 (587)
Q Consensus 412 IIRSA~AFGa~gVIL~~~~s~p~--s-pkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~- 487 (587)
+.-||-||||++|++........ + ..|++ .-|.-|.+. ...|+.+.+..+++ |-.++-+++-+ .++.++.
T Consensus 23 V~LtARAfGA~gil~~~e~De~v~esv~dVv~-rwGG~F~v~--~~~nw~~~i~~wk~-gG~vvHLTMYG--~~i~dv~~ 96 (179)
T COG1303 23 VALTARAFGADGILLDGEEDEKVVESVEDVVE-RWGGPFFVK--FGVNWRKVIREWKE-GGIVVHLTMYG--LNIDDVID 96 (179)
T ss_pred hhhhhHhhCCceEEEcCcccHHHHHHHHHHHH-hcCCCEEEE--EcccHHHHHHHhhc-CCEEEEEEecC--CcchhhhH
Confidence 34589999999999975431111 1 23333 345555543 45699999999998 66777777643 3444432
Q ss_pred ----CCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007847 488 ----PGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 488 ----~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
...+.++|+|.| =++.++-++||+.|.|-.
T Consensus 97 ei~~~~k~~lvvVGae--KVp~evYelADyNV~Vgn 130 (179)
T COG1303 97 EIRESKKDVLVVVGAE--KVPGEVYELADYNVSVGN 130 (179)
T ss_pred HHHhcCCcEEEEEccc--cCCHHHhhhcccceecCC
Confidence 234589999999 589999999999999853
No 22
>PRK12703 tRNA 2'-O-methylase; Reviewed
Probab=93.93 E-value=0.37 Score=51.88 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCeEEEccCCCCCC-c-hhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCc--cCCCCC
Q 007847 412 IIRSAYFFGASGVVLCAKNSAPL-S-GVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAV--PLNEIP 487 (587)
Q Consensus 412 IIRSA~AFGa~gVIL~~~~s~p~-s-pkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~--~L~ev~ 487 (587)
+.-||-||||++|++....-... + .++ -..-|.-|.+.+ ..++...+... .| .|+-+++-+..+ -+.++.
T Consensus 21 v~l~ara~ga~~~~~~~~d~~~~~~~~~v-~~~~gg~f~~~~--~~~~~~~~~~~--~g-~vvhltmyg~~~~~~~~~i~ 94 (339)
T PRK12703 21 VALTARAFGASSILVDERDETLENTIKKV-VDNFGGSFEIKT--GIEWKSEFKKF--HG-IRVHLTMYGRPIEDVIDEIR 94 (339)
T ss_pred HHHHHHHhcCCeeEecCCcHhHHHHHHHH-HHhcCCCeEEEe--ccCHHHHHHhc--CC-EEEEEecCCCchHHHHHHHh
Confidence 45688999999999875411111 1 111 223566677665 56888888776 34 788777653221 122333
Q ss_pred -CCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007847 488 -PGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 488 -~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
...++++|+|.| =++.++-+.||+.|.|-.
T Consensus 95 ~~~~~~~~vvg~~--kvp~~~y~~ad~nv~v~~ 125 (339)
T PRK12703 95 ESGKDVMVLVGSE--KVPIEAYEIADYNVSVTN 125 (339)
T ss_pred ccCCCEEEEECCC--cCCHHHHhhcccceeeCC
Confidence 457999999999 589999999999999853
No 23
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=92.06 E-value=1.5 Score=39.09 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=54.2
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE--cCHHHHhhhhCCCCCceE
Q 007847 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE--TSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~--Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.|..+++.+. ..-+++..+.. ..-...+..+|++.+||++. -++.+|...+|....-.+
T Consensus 16 kl~~G~~~v~kai~~gk--aklViiA~D~~----------~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG~a~Gk~~~~~~ 83 (99)
T PRK01018 16 KVILGSKRTIKAIKLGK--AKLVIVASNCP----------KDIKEDIEYYAKLSGIPVYEYEGSSVELGTLCGKPFTVSA 83 (99)
T ss_pred CEEEcHHHHHHHHHcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEECCCHHHHHHHhCCCCCEEE
Confidence 36999999999999875 67788877642 11235678889999999755 399999999997655677
Q ss_pred EEEec
Q 007847 370 VLDAS 374 (587)
Q Consensus 370 Va~a~ 374 (587)
+++..
T Consensus 84 vaI~D 88 (99)
T PRK01018 84 LAIVD 88 (99)
T ss_pred EEEec
Confidence 77654
No 24
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=91.26 E-value=1.7 Score=37.41 Aligned_cols=69 Identities=17% Similarity=0.164 Sum_probs=53.2
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHH-HHHHHHhcCCcEEEcCH-HHHhhhhCCCCCceEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEK-VLKMAENMGISIKETSK-HDLNMVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~-Il~la~e~gi~V~~Vs~-~~Ld~Lsg~~~HQGVV 370 (587)
++.|.+-|..+++.+. +.-+++..+.. ...... +..+|++.+||++.+.. .+|..+.+......++
T Consensus 16 lv~G~~~v~k~l~~~~--~~lvilA~d~~----------~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG~~~g~~~~~~~~ 83 (95)
T PF01248_consen 16 LVKGIKEVLKALKKGK--AKLVILAEDCS----------PDSIKKHLPALCEEKNIPYVFVPSKEELGRACGKKRPVSAL 83 (95)
T ss_dssp EEESHHHHHHHHHTTC--ESEEEEETTSS----------SGHHHHHHHHHHHHTTEEEEEESHHHHHHHHTTSSSTSSEE
T ss_pred EEEchHHHHHHHHcCC--CcEEEEcCCCC----------hhhhcccchhheeccceeEEEECCHHHHHHHHCCCCcEEEE
Confidence 6999999999999984 66788877643 112344 77889999999988876 8999999987666666
Q ss_pred EEe
Q 007847 371 LDA 373 (587)
Q Consensus 371 a~a 373 (587)
+..
T Consensus 84 ~i~ 86 (95)
T PF01248_consen 84 AIK 86 (95)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 25
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=90.63 E-value=2.4 Score=37.27 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=51.4
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCCCceEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~HQGVV 370 (587)
++.|.+-+..|++.+. ...+|+..+.+ ..-+..|..+|++++||+.++ +..+|.+.++-...--.+
T Consensus 14 ~vvG~kqt~Kai~kg~--~~~v~iA~Da~----------~~vv~~l~~lceek~Ip~v~V~s~~~LGkAcgi~V~aa~a 80 (84)
T PRK13600 14 FVVGLKETLKALKKDQ--VTSLIIAEDVE----------VYLMTRVLSQINQKNIPVSFFKSKHALGKHVGINVNATIV 80 (84)
T ss_pred ceeeHHHHHHHHhcCC--ceEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCcCeEEE
Confidence 4899999999999886 56899987653 234667889999999998766 677899988865444333
No 26
>KOG0838 consensus RNA Methylase, SpoU family [RNA processing and modification]
Probab=90.35 E-value=0.071 Score=55.37 Aligned_cols=124 Identities=23% Similarity=0.238 Sum_probs=77.4
Q ss_pred CCCCcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEec---CC
Q 007847 402 EVTDPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSV---SS 478 (587)
Q Consensus 402 ~V~DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~---~~ 478 (587)
.+..-.|.|..++.|..|+++.+++..+. .+..+.-.++..+++.-..+|+- +.+++ -+
T Consensus 56 ~~~kR~~~~~~~~~~~~~~~~e~~~v~~~-----------------~~~~~s~h~L~~~t~~r~h~g~~-leasl~vyld 117 (271)
T KOG0838|consen 56 SNGKRDCRGLLLQSATDFRSTEFELVLRR-----------------DIEAVSKHDLNSLTDFRPHNGIL-LEASLCVYLD 117 (271)
T ss_pred hcccccceeeeeccccccCcceeeehhhh-----------------hhhccChhhHHHHHhhccccceE-EeeEEEeecc
Confidence 44555678888999999999888765433 12223323444443332244543 33331 00
Q ss_pred CCccCC---------CCCCCCCEEEEEcCCCCCccHHHHHh---CCcEEEEcCCCCCCCcCCcccccccCCCCCCccccc
Q 007847 479 KAVPLN---------EIPPGQPTILVLGSEGTGLRPLVERS---CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQ 546 (587)
Q Consensus 479 ~a~~L~---------ev~~~~p~aLVLGnEg~GLS~~vl~~---cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~ 546 (587)
+-.+.. .+-...|+.++.|++ .+|++.+.+. |+..+.|++..
T Consensus 118 e~tDp~n~gaI~rsA~~lg~~~v~lv~~n~-s~lS~~vskss~gale~l~I~q~~------------------------- 171 (271)
T KOG0838|consen 118 EVTDPQNIGAIIRSAYFLGADGVLLVKGNS-SPLSPVVSKSSAGALEVLPIRQVD------------------------- 171 (271)
T ss_pred CccCCcchHHHHHhHHHhcCCceEEEeccC-CCCchhHHHhhhchhheeeHHHcC-------------------------
Confidence 111111 112357899999999 8999988765 57888998742
Q ss_pred cCCCCCcccHHHHHHHHHHHHHcCc
Q 007847 547 SFMAVESLNVSVAAGVLLHHLVGHQ 571 (587)
Q Consensus 547 ~~g~VeSLNVSVAAgIlLYEl~rqr 571 (587)
...+||||+||+||.|+..--+.
T Consensus 172 --~~~efl~vsvaaG~~l~~t~~~~ 194 (271)
T KOG0838|consen 172 --NPLEFLNVSVAAGIRLHGTCSWA 194 (271)
T ss_pred --CHHHHHHHHHhCceEEEEeecCc
Confidence 25789999999999998754443
No 27
>PF04705 TSNR_N: Thiostrepton-resistance methylase, N terminus; InterPro: IPR006795 This region is found in some members of the SpoU-type rRNA methylase family (IPR001537 from INTERPRO).; GO: 0008649 rRNA methyltransferase activity, 0046677 response to antibiotic; PDB: 3GYQ_B 3NK6_A 3NK7_A.
Probab=89.93 E-value=0.7 Score=42.25 Aligned_cols=99 Identities=16% Similarity=0.216 Sum_probs=62.9
Q ss_pred CCChhhhhhhhhhcCCCCcccccCCCCCCCcccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHH
Q 007847 259 TEKPEYQRWNRQENSGRTTWKEAAPSTVPKMVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV 338 (587)
Q Consensus 259 ~~np~~qrw~~l~~~~rk~~~~age~~~p~~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~I 338 (587)
+-.|.+||.-..-...|. .-+.+ +|+-..|+.+++.+|- ++..+|..++..+. ..|
T Consensus 10 ~SDPaVqRIiDvtk~sRs----~ikT~-------LIED~EPL~~~i~AGv-efieVYg~~~~p~~------------~~l 65 (115)
T PF04705_consen 10 RSDPAVQRIIDVTKHSRS----NIKTT-------LIEDPEPLTHSIRAGV-EFIEVYGSDGSPVP------------PEL 65 (115)
T ss_dssp SSSSCCHHHHHHHCTSTT----TTTEE-------EEESHHHHHHHHCTT--EEEEEEEETTS---------------CCC
T ss_pred CCchhhHHHHhhcccchh----hheee-------eecCchHHHHHHhcCc-EEEEEeeecCCCCC------------hHH
Confidence 456888888776422222 11222 6999999999999998 59999998875432 246
Q ss_pred HHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEEecccccccc
Q 007847 339 LKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKI 381 (587)
Q Consensus 339 l~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i 381 (587)
+.+|++.+|+|..++...+|+|-.+....-++.++.-+....+
T Consensus 66 l~~c~~r~Ipvrlv~~~v~N~lFk~erK~k~fGiArvPrp~~f 108 (115)
T PF04705_consen 66 LAACRQRGIPVRLVDSAVVNQLFKGERKPKVFGIARVPRPARF 108 (115)
T ss_dssp CHHHHCTT--EEEE-HHHHCCCS-SSS--SEEEEEE------H
T ss_pred HHHHHhcCCceEEecHHHHHHHHhcccccceeeeecCCCCcch
Confidence 8899999999999999999999887766667776654443333
No 28
>PRK07283 hypothetical protein; Provisional
Probab=89.47 E-value=3.4 Score=36.73 Aligned_cols=68 Identities=15% Similarity=0.195 Sum_probs=50.8
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEE-EcCHHHHhhhhCCCCCceEEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~-~Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|...|.++++++. +.-+++.++.. ....+++.+.|+..+||++ ..+..+|....|. + ..|++
T Consensus 19 lv~G~~~v~~aik~gk--~~lVi~A~Das----------~~~~kk~~~~~~~~~Vp~~~~~t~~eLG~a~Gk-~-~~vva 84 (98)
T PRK07283 19 IISGEELVVKAIQSGQ--AKLVFLANDAG----------PNLTKKVTDKSNYYQVEVSTVFSTLELSAAVGK-P-RKVLA 84 (98)
T ss_pred eeEcHHHHHHHHHcCC--ccEEEEeCCCC----------HHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCC-C-ceEEE
Confidence 5999999999999986 56677776542 1134567788888999975 5688999998886 3 56766
Q ss_pred Eec
Q 007847 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 85 i~d 87 (98)
T PRK07283 85 VTD 87 (98)
T ss_pred EeC
Confidence 543
No 29
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=88.58 E-value=2.5 Score=38.83 Aligned_cols=66 Identities=15% Similarity=0.058 Sum_probs=47.8
Q ss_pred eEEEecCHHHHHHHhhhcCcEEEEEecCC-CCccCCCCCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEc
Q 007847 450 ELRYCNNMMQFLVSSAENGWRVLGGSVSS-KAVPLNEIPPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518 (587)
Q Consensus 450 pv~~~~nl~~~L~~Lke~G~~Vvgts~~~-~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IP 518 (587)
+++...++.++++-|+.. .||..+... +...+......++++|||+....|+++.-++.- ..|+|.
T Consensus 21 ~livlpdl~DAiEvl~p~--~V~~i~~~~~~~~~~~~~~~~~rvllVf~G~d~gfsk~El~~g-~~v~~~ 87 (106)
T PF09895_consen 21 SLIVLPDLKDAIEVLKPD--VVYLISRSGEEEEKLEFLKIEGRVLLVFSGSDPGFSKIELELG-EAVYIR 87 (106)
T ss_pred cEEEeCCHHHHHHhcCCc--EEEEEcCcccccccccccCcCCcEEEEEeCCCCCCChhHhcCC-ceEEee
Confidence 566778999999998754 566655432 223344566778899999999999999887774 456664
No 30
>PRK07714 hypothetical protein; Provisional
Probab=87.86 E-value=4.8 Score=35.74 Aligned_cols=69 Identities=13% Similarity=0.177 Sum_probs=50.1
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEE-EcCHHHHhhhhCCCCCceEEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~-~Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|...|.++++.+. +.-+++..+.. ....+++..+|+..++|++ ..++.+|....+..+.. +++
T Consensus 19 ~v~G~~~v~~al~~g~--~~lViiA~D~s----------~~~~~ki~~~~~~~~vp~~~~~sk~eLG~a~Gk~~~~-~va 85 (100)
T PRK07714 19 VISGEELVLKEVRSGK--AKLVLLSEDAS----------VNTTKKITDKCTYYNVPMRKVENRQQLGHAIGKDERV-VVA 85 (100)
T ss_pred eeecHHHHHHHHHhCC--ceEEEEeCCCC----------HHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCcce-EEE
Confidence 5999999999999986 56677766532 1134567788899999975 57889999988865333 555
Q ss_pred Eec
Q 007847 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 86 i~d 88 (100)
T PRK07714 86 VLD 88 (100)
T ss_pred EeC
Confidence 443
No 31
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=87.23 E-value=6.5 Score=34.30 Aligned_cols=71 Identities=14% Similarity=0.222 Sum_probs=53.7
Q ss_pred cccCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcE-EEcCHHHHhhhhCCCCCc
Q 007847 289 MVGEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISI-KETSKHDLNMVVGNRPHQ 367 (587)
Q Consensus 289 ~~~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V-~~Vs~~~Ld~Lsg~~~HQ 367 (587)
+.+.++.|.+.+..+++.+. ..-+++..+.. ..-...|..+|+..+||+ +.-+..+|.+..+-..+-
T Consensus 5 ~~GKlv~G~~~vlkaIk~gk--akLViiA~Da~----------~~~~k~i~~~c~~~~Vpv~~~~t~~eLG~A~G~~v~a 72 (82)
T PRK13601 5 CPSKRVVGAKQTLKAITNCN--VLQVYIAKDAE----------EHVTKKIKELCEEKSIKIVYIDTMKELGVMCGIDVGA 72 (82)
T ss_pred cCccEEEchHHHHHHHHcCC--eeEEEEeCCCC----------HHHHHHHHHHHHhCCCCEEEeCCHHHHHHHHCCccCe
Confidence 45678999999999999875 67788877642 123456788999999998 456888999988876655
Q ss_pred eEEE
Q 007847 368 GLVL 371 (587)
Q Consensus 368 GVVa 371 (587)
-+++
T Consensus 73 a~~~ 76 (82)
T PRK13601 73 AAAA 76 (82)
T ss_pred eeEE
Confidence 4444
No 32
>PTZ00106 60S ribosomal protein L30; Provisional
Probab=87.06 E-value=5.9 Score=36.16 Aligned_cols=72 Identities=13% Similarity=0.084 Sum_probs=52.7
Q ss_pred cCeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEE-E-cCHHHHhhhhCCCCCce
Q 007847 291 GEGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-E-TSKHDLNMVVGNRPHQG 368 (587)
Q Consensus 291 ~e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~-~-Vs~~~Ld~Lsg~~~HQG 368 (587)
+.++.|.+.|..+|+.+. ..-+++..+.. ..-.+++..+|+..+||++ + -+..+|...++....-.
T Consensus 24 GKlv~G~~~vlkalk~gk--aklViiA~D~~----------~~~kkki~~~~~~~~Vpv~~~~~t~~eLG~A~Gk~~r~s 91 (108)
T PTZ00106 24 GKYTLGTKSTLKALRNGK--AKLVIISNNCP----------PIRRSEIEYYAMLSKTGVHHYAGNNNDLGTACGRHFRVS 91 (108)
T ss_pred CCeeecHHHHHHHHHcCC--eeEEEEeCCCC----------HHHHHHHHHHHhhcCCCEEEeCCCHHHHHHHhCCccCeE
Confidence 336999999999999875 67888877643 1123567788999999986 3 89999999988544444
Q ss_pred EEEEec
Q 007847 369 LVLDAS 374 (587)
Q Consensus 369 VVa~a~ 374 (587)
++++..
T Consensus 92 vvaI~D 97 (108)
T PTZ00106 92 VMSITD 97 (108)
T ss_pred EEEEeC
Confidence 555443
No 33
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=86.57 E-value=6.5 Score=36.12 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=53.7
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGLVL 371 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVVa 371 (587)
++.|.+.|..+++.+. ..-+++..+.. +..-...+..+|+..+||+.. -++++|....+....-.+++
T Consensus 27 l~~G~~~v~kaikkgk--a~LVilA~D~s---------~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG~a~Gk~~~~svva 95 (117)
T TIGR03677 27 IKKGTNEVTKAVERGI--AKLVVIAEDVE---------PPEIVAHLPALCEEKGIPYVYVKKKEDLGAAAGLEVGAASAA 95 (117)
T ss_pred EeEcHHHHHHHHHcCC--ccEEEEeCCCC---------cHHHHHHHHHHHHHcCCCEEEeCCHHHHHHHhCCCCCeEEEE
Confidence 5999999999999986 56777776542 011236678899999999765 48889999999766777777
Q ss_pred Eec
Q 007847 372 DAS 374 (587)
Q Consensus 372 ~a~ 374 (587)
+..
T Consensus 96 I~d 98 (117)
T TIGR03677 96 IVD 98 (117)
T ss_pred EEc
Confidence 655
No 34
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=85.42 E-value=9.4 Score=33.02 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=49.5
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCCCceEE
Q 007847 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~HQGVV 370 (587)
.++.|.+.+..+|+.+. ..-+++..+.. ..-...|..+|++.+||++.+ +..+|.+.+|-...--++
T Consensus 11 kl~~G~~~v~kai~~gk--aklViiA~D~~----------~~~~~~i~~~c~~~~Vp~~~~~s~~eLG~a~G~~~~~a~~ 78 (82)
T PRK13602 11 SIVIGTKQTVKALKRGS--VKEVVVAEDAD----------PRLTEKVEALANEKGVPVSKVDSMKKLGKACGIEVGAAAV 78 (82)
T ss_pred CEEEcHHHHHHHHHcCC--eeEEEEECCCC----------HHHHHHHHHHHHHcCCCEEEECCHHHHHHHHCCCcCEEEE
Confidence 36999999999999885 66788877643 112356788999999998654 668898888765544444
Q ss_pred E
Q 007847 371 L 371 (587)
Q Consensus 371 a 371 (587)
+
T Consensus 79 a 79 (82)
T PRK13602 79 A 79 (82)
T ss_pred E
Confidence 3
No 35
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=85.20 E-value=7.7 Score=36.00 Aligned_cols=70 Identities=14% Similarity=0.064 Sum_probs=53.5
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhH-HHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCCCceEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKG-YEKVLKMAENMGISIKET-SKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~-~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~HQGVV 370 (587)
++.|.+.|..+++.+. ..-+++..+.. ... ...+..+|++.+||+..+ ++.+|...++...+-.++
T Consensus 31 lv~G~~~v~kaikkgk--akLVilA~D~s----------~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG~a~Gk~~~~svv 98 (122)
T PRK04175 31 IKKGTNETTKAVERGI--AKLVVIAEDVD----------PEEIVAHLPLLCEEKKIPYVYVPSKKDLGKAAGLEVGAAAA 98 (122)
T ss_pred EeEcHHHHHHHHHcCC--ccEEEEeCCCC----------hHHHHHHHHHHHHHcCCCEEEECCHHHHHHHhCCCCCeEEE
Confidence 6999999999999985 56677776542 112 356788999999998665 788899998877667777
Q ss_pred EEec
Q 007847 371 LDAS 374 (587)
Q Consensus 371 a~a~ 374 (587)
++..
T Consensus 99 aI~d 102 (122)
T PRK04175 99 AIVD 102 (122)
T ss_pred EEec
Confidence 7654
No 36
>PRK06683 hypothetical protein; Provisional
Probab=84.53 E-value=11 Score=32.79 Aligned_cols=66 Identities=17% Similarity=0.167 Sum_probs=49.0
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCCCCceE
Q 007847 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNRPHQGL 369 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGV 369 (587)
.++.|.+.++.+++.+. ..-+|+.++.. ..-.+.|..+|+..+||++. -+..+|.+.+|-...--+
T Consensus 11 k~v~G~~~v~kaik~gk--aklViiA~Da~----------~~~~~~i~~~~~~~~Vpv~~~~t~~eLG~A~G~~~~~a~ 77 (82)
T PRK06683 11 NVVVGHKRTLEAIKNGI--VKEVVIAEDAD----------MRLTHVIIRTALQHNIPITKVESVRKLGKVAGIQVGASA 77 (82)
T ss_pred CEEEcHHHHHHHHHcCC--eeEEEEECCCC----------HHHHHHHHHHHHhcCCCEEEECCHHHHHHHhCCcccEEE
Confidence 36999999999999875 67888887643 11245678899999999854 478889888876544333
No 37
>PRK05583 ribosomal protein L7Ae family protein; Provisional
Probab=83.04 E-value=11 Score=34.08 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=50.5
Q ss_pred CeEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEE-EcCHHHHhhhhCCCCCceEE
Q 007847 292 EGLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIK-ETSKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 292 e~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~-~Vs~~~Ld~Lsg~~~HQGVV 370 (587)
.++.|...|.++++.+. +.-|++..+.. . ..-++|..+|+..+++++ ..++.+|....|..+ -.++
T Consensus 17 klv~G~~~v~~aik~gk--~~lVI~A~D~s--~--------~~kkki~~~~~~~~vp~~~~~t~~eLg~a~Gk~~-~~~i 83 (104)
T PRK05583 17 KLLEGYNKCEEAIKKKK--VYLIIISNDIS--E--------NSKNKFKNYCNKYNIPYIEGYSKEELGNAIGRDE-IKIL 83 (104)
T ss_pred CeeecHHHHHHHHHcCC--ceEEEEeCCCC--H--------hHHHHHHHHHHHcCCCEEEecCHHHHHHHhCCCC-eEEE
Confidence 36999999999999985 55566655432 1 123567788888999964 679999988887643 6666
Q ss_pred EEecc
Q 007847 371 LDASP 375 (587)
Q Consensus 371 a~a~p 375 (587)
++..+
T Consensus 84 ai~d~ 88 (104)
T PRK05583 84 GVKDK 88 (104)
T ss_pred EEeCh
Confidence 65543
No 38
>COG4752 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=81.38 E-value=2.5 Score=41.26 Aligned_cols=138 Identities=17% Similarity=0.257 Sum_probs=79.7
Q ss_pred cHHHHHHHHHHhCCCeEEEccCCCCC--Cchh---HHHhccCcee------EEeEEEe-cCHHHHHHHh-hhcCc--EEE
Q 007847 408 NLGAIIRSAYFFGASGVVLCAKNSAP--LSGV---VSKASSGSLE------LMELRYC-NNMMQFLVSS-AENGW--RVL 472 (587)
Q Consensus 408 NLGAIIRSA~AFGa~gVIL~~~~s~p--~spk---vvRASaGAle------~lpv~~~-~nl~~~L~~L-ke~G~--~Vv 472 (587)
.+-.|.|+|-.....+-.++..--+. ...+ .-+..-|... .+.+..+ ..+.+.+++. +..|- .++
T Consensus 30 D~HDIaR~artYeikgYyiV~pidAQ~~~~~r~i~yW~~g~G~~yNp~R~e~~~lv~l~~~le~ViEdIEk~eG~rPLi~ 109 (190)
T COG4752 30 DLHDIARPARTYEIKGYYIVQPIDAQRIVIQRQINYWLSGEGRKYNPTRYEIVQLVRLAYTLEEVIEDIEKEEGRRPLIV 109 (190)
T ss_pred cHhhhcccccceeeccEEEEeecHHHHHHHHHHHHHHhcccCCcCCcCHHHHHHHHhHHHHHHHHHHHHHhhcCCCceEE
Confidence 36678888888888887654321110 0000 0122333221 1222211 1344455544 23343 466
Q ss_pred EEecCC--CCccCCC-----CCCCCCEEEEEcCCCCCccHHHHHhCCcEEEEcCCCCCCCcCCcccccccCCCCCCcccc
Q 007847 473 GGSVSS--KAVPLNE-----IPPGQPTILVLGSEGTGLRPLVERSCTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQF 545 (587)
Q Consensus 473 gts~~~--~a~~L~e-----v~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f 545 (587)
+++... ..+++.. +.-.+|.+|+|| -|.||++++++..|+++. |.. +
T Consensus 110 ~TsAr~~~N~isy~~lr~~I~e~dkp~LilfG-TGwGlpde~m~~sDYiLE-PIr-------a----------------- 163 (190)
T COG4752 110 GTSARTYPNTISYSWLRNEIQERDKPWLILFG-TGWGLPDELMNTSDYILE-PIR-------A----------------- 163 (190)
T ss_pred eccccccCCcccHHHHHHHHhhcCCcEEEEec-CCCCCCHHHHHHhhHhhh-hhh-------c-----------------
Confidence 665421 1222222 234689999999 589999999999998654 432 1
Q ss_pred ccCCCCCcccHHHHHHHHHHHHHcCccC
Q 007847 546 QSFMAVESLNVSVAAGVLLHHLVGHQVS 573 (587)
Q Consensus 546 ~~~g~VeSLNVSVAAgIlLYEl~rqr~~ 573 (587)
.+...-|.|-.|++|+|-.++..++|
T Consensus 164 --~sd~NHLSVRaAvAIIlDRLfgeNr~ 189 (190)
T COG4752 164 --ASDWNHLSVRAAVAIILDRLFGENRC 189 (190)
T ss_pred --cCCcchhhHHHHHHHHHHHHhccccC
Confidence 13567889999999999999988765
No 39
>PF01994 Trm56: tRNA ribose 2'-O-methyltransferase, aTrm56; InterPro: IPR002845 This entry represents tRNA ribose 2'-O-methyltransferase aTrm56, which specifically catalyzes the AdoMet-dependent 2'-O-ribose methylation of cytidine at position 56 in tRNAs. The crystal structure of Pyrococcus horikoshii aTrm56 complexed with S-adenosyl-L-methionine has been determined to 2.48 A resolution. aTrm56 consists of the SPOUT domain, which contains the characteristic deep trefoil knot, and a unique C-terminal beta-hairpin []. A conserved cytidine at position 56 of tRNA contributes to the maintenance of the L-shaped tertiary structure. aTrm56 catalyzes the 2'-O-methylation of the cytidine residue in archaeal tRNA, using S-adenosyl-L-methionine. Biochemical assays showed that aTrm56 forms a dimer and prefers the L-shaped tRNA to the lambda form as its substrate [, ].; GO: 0008175 tRNA methyltransferase activity, 0002128 tRNA nucleoside ribose methylation, 0005737 cytoplasm; PDB: 2YY8_A 2O3A_B.
Probab=79.58 E-value=1.6 Score=40.79 Aligned_cols=65 Identities=15% Similarity=0.202 Sum_probs=42.5
Q ss_pred EEEecCHHHHHHHhhhcCcEEEEEecCCCCccCCC----CC-CCCCEEEEEcCCCCCccHHHHHhCCcEEEEcC
Q 007847 451 LRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLNE----IP-PGQPTILVLGSEGTGLRPLVERSCTHLVRIPG 519 (587)
Q Consensus 451 v~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~e----v~-~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IPm 519 (587)
+....++...+...|++|..|+-+++-+ .++.+ +. ...++++|+|.| =++.++-+.||+.|.|-.
T Consensus 7 ve~~~~w~~~i~~wK~~~G~VVHLTMYG--~~i~dvi~~Ir~~~~~~lvVVGae--KVP~evYe~ADyNVaVgn 76 (120)
T PF01994_consen 7 VEYGVSWKSYIREWKEKGGKVVHLTMYG--ENIDDVIDEIRESCKDLLVVVGAE--KVPGEVYELADYNVAVGN 76 (120)
T ss_dssp EEEES-HHHHHHC----SSEEEEE-TTS--EEHHHCHHHHHHCTSEEEEEE-SS-----CCHHHHSSEEEESSS
T ss_pred EEECCCHHHHHHHhcccCCeEEEEEecC--CchHHHHHHHhccCCCEEEEECCC--cCCHHHHhhCCcceeeCC
Confidence 3446799999999999999999988753 33332 33 567899999999 589999999999999853
No 40
>PF03465 eRF1_3: eRF1 domain 3; InterPro: IPR005142 This domain is found in the release factor eRF1 which terminates protein biosynthesis by recognizing stop codons at the A site of the ribosome and stimulating peptidyl-tRNA bond hydrolysis at the peptidyl transferase centre. The crystal structure of human eRF1 is known []. The overall shape and dimensions of eRF1 resemble a tRNA molecule with domains 1, 2, and 3 of eRF1 corresponding to the anticodon loop, aminoacyl acceptor stem, and T stem of a tRNA molecule, respectively. The position of the essential GGQ motif at an exposed tip of domain 2 suggests that the Gln residue coordinates a water molecule to mediate the hydrolytic activity at the peptidyl transferase centre. A conserved groove on domain 1, 80 A from the GGQ motif, is proposed to form the codon recognition site []. This domain is also found in other proteins which may also be involved in translation termination but this awaits experimental verification.; PDB: 3OBY_A 3E1Y_D 1DT9_A 2KTU_A 2KTV_A 3IR9_A 3E20_H 3OBW_A 3AGJ_F 3MCA_B ....
Probab=78.88 E-value=3.8 Score=37.26 Aligned_cols=57 Identities=23% Similarity=0.350 Sum_probs=43.4
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchh-------------HHHHHHHHHHhcCCcEEEcCHH
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKK-------------GYEKVLKMAENMGISIKETSKH 355 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~-------------~~~~Il~la~e~gi~V~~Vs~~ 355 (587)
.+||...|..||+.|. +..|++++++..+.+- .+. .++.+++.+++.|..|..++..
T Consensus 22 ~~yG~~eV~~Al~~Ga--V~~LlI~d~l~~~~~~----~r~~~~~~~~~~~~~~~i~~l~~~a~~~g~~v~iis~~ 91 (113)
T PF03465_consen 22 AVYGIEEVKKALEMGA--VETLLISDDLFRSRDV----ERCKCPECGGELEVVELIEELIELAEQSGAKVEIISSE 91 (113)
T ss_dssp EEESHHHHHHHHHTT---EEEEEEEHHHHTESCH----HHHHSTTTHSEEEEEEHHHHHHHHHHHTTSEEEEE-TT
T ss_pred EEECHHHHHHHHHhCC--CcEEEEecccccccce----eccccccccchhhhHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 5999999999999996 8999999976432211 111 2688899999999999999874
No 41
>PF04452 Methyltrans_RNA: RNA methyltransferase; InterPro: IPR006700 Methyltransferases (Mtases) are responsible for the transfer of methyl groups between two molecules. The transfer of the methyl group from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms. The reaction is catalyzed by Mtases and modifies DNA, RNA, proteins or small molecules, such as catechol, for regulatory purposes. Proteins in this entry belong to the RsmE family of Mtases, this is supported by crystal structural studying, which show a close structural homology to other known methyltransferases []. This entry contains RsmE of Escherichia coli, which specifically methylates the uridine in position 1498 of 16S rRNA in the fully assembled 30S ribosomal subunit [, ].; GO: 0008168 methyltransferase activity, 0006364 rRNA processing; PDB: 1NXZ_B 1VHY_B 2EGW_A 2EGV_A 2Z0Y_A 2CX8_A 3KW2_A 1VHK_D 1Z85_B 1V6Z_A ....
Probab=76.34 E-value=27 Score=34.98 Aligned_cols=111 Identities=15% Similarity=0.229 Sum_probs=59.0
Q ss_pred EEEEeCCCCcCcHHHHHHHHHHhCCCeEEEc--cCCCCCCch-----------hHHHhc---cCceeEEeEEEecCHHHH
Q 007847 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLC--AKNSAPLSG-----------VVSKAS---SGSLELMELRYCNNMMQF 460 (587)
Q Consensus 397 ~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~--~~~s~p~sp-----------kvvRAS---aGAle~lpv~~~~nl~~~ 460 (587)
+.++-.+-.|..+=-|++-|.-+|++.++.. .++...+.. ++++.| +|-.....+....++.++
T Consensus 63 i~L~~al~K~~~~d~il~katELGv~~i~p~~s~rsv~k~~~~~~~~k~~R~~~i~~eA~kQs~r~~~P~i~~~~~l~~~ 142 (225)
T PF04452_consen 63 ITLAQALPKGDRMDWILQKATELGVSRIIPVISERSVVKSDGKKSDKKLERWQRIAIEAAKQSGRTRLPEIEPPISLKEL 142 (225)
T ss_dssp EEEEEE--STTHHHHHHHHHHHTT-SEEEEEE-TTSSS---HHHHHHHHHHHHHHHHHHHHHHT-SS--EEEEEEEHHHH
T ss_pred EEEEEEEEcCccHHHHHHHHHhcCCCEEEEEEeeeeeeeccchhhHHHHHHHHHHHHHHHHhcCCCccceeeccccHHHH
Confidence 5555688999999999999999999999753 333222211 122222 234444556666789999
Q ss_pred HHHhhhcCcEEEEEecCCCC--ccCCCCCCC--C-CEEEEEcCCCCCccHHHHHh
Q 007847 461 LVSSAENGWRVLGGSVSSKA--VPLNEIPPG--Q-PTILVLGSEGTGLRPLVERS 510 (587)
Q Consensus 461 L~~Lke~G~~Vvgts~~~~a--~~L~ev~~~--~-p~aLVLGnEg~GLS~~vl~~ 510 (587)
++....... +++ +..... ..+...... . ++++++|.|| |.+++-.+.
T Consensus 143 l~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~i~IGPEG-Gfs~~E~~~ 194 (225)
T PF04452_consen 143 LEDIPDEDL-LIL-DEDEEPSLSSLSEILNSEKSFSIAIIIGPEG-GFSEEEIEF 194 (225)
T ss_dssp HHHSSECSE-EEE--TTTTCBGGGCSHTTSCHHC-EEEEEE--TT----HHHHHH
T ss_pred hhccccCCE-EEE-cccccccccchhhhhhcccCCcEEEEECCCC-CCCHHHHHH
Confidence 988776654 443 433221 122222221 1 8899999998 999865543
No 42
>TIGR00046 RNA methyltransferase, RsmE family. Members of this protein family, previously called conserved hypothetical protein TIGR00046, include the YggJ protein of E. coli, which has now been shown to methylate U1498 in 16S rRNA.
Probab=73.23 E-value=35 Score=34.66 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=63.7
Q ss_pred EEEEeCCCCcCcHHHHHHHHHHhCCCeEEE--ccCCCCCCc----h------hHHHhc---cCceeEEe-EEEecCHHHH
Q 007847 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVL--CAKNSAPLS----G------VVSKAS---SGSLELME-LRYCNNMMQF 460 (587)
Q Consensus 397 ~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL--~~~~s~p~s----p------kvvRAS---aGAle~lp-v~~~~nl~~~ 460 (587)
+.++-.+-.+.-+=-|++-|.-+||+.|+. +.++...+. . ++++.+ +|-. ++| +....++.++
T Consensus 78 i~l~~al~K~~~~d~il~katELGv~~i~p~~s~rs~~~~~~~~~~k~~rw~~i~~eA~~Q~~r~-~lP~i~~~~~l~~~ 156 (240)
T TIGR00046 78 IHLAIVLIKGKKMEFIIRKLTELGVSKIIPFNAERSVVKLDIEAIKKLERWQKIAIEAAEQSGRN-IVPEIKPPKNLKEK 156 (240)
T ss_pred EEEEEeecCCccHHHHHHHHHHcCCCEEEEEEeccceeccCchHHHHHHHHHHHHHHHHHhcCCC-CCCEECCcCCHHHH
Confidence 334446778899999999999999999965 343322231 1 112222 2222 344 3344677888
Q ss_pred HHHhhhcCcEEEEEecCCCCccCCCCC-CCCCEEEEEcCCCCCccHHHHHhC
Q 007847 461 LVSSAENGWRVLGGSVSSKAVPLNEIP-PGQPTILVLGSEGTGLRPLVERSC 511 (587)
Q Consensus 461 L~~Lke~G~~Vvgts~~~~a~~L~ev~-~~~p~aLVLGnEg~GLS~~vl~~c 511 (587)
+.........++. .... ......+. ...+++|++|.|| |.+++-++.+
T Consensus 157 l~~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~v~~~IGPEG-Gfs~~Ei~~~ 205 (240)
T TIGR00046 157 CAEAYEEALKLNF-HPEA-SPLSANLPIPAGNIVIIIGPEG-GFSEKEIQLL 205 (240)
T ss_pred HhhCcCCCeEEEE-CCcc-cchhhhhccCCCcEEEEECCCC-CCCHHHHHHH
Confidence 7655433333333 2211 11111111 2346999999998 9999766544
No 43
>COG1385 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.29 E-value=13 Score=38.37 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=66.7
Q ss_pred EEEEeCCCCcCcHHHHHHHHHHhCCCeEEEc--cCCCCCCch-------hHHHhccCcee-----EEe-EEEecCHHHHH
Q 007847 397 WVALDEVTDPQNLGAIIRSAYFFGASGVVLC--AKNSAPLSG-------VVSKASSGSLE-----LME-LRYCNNMMQFL 461 (587)
Q Consensus 397 ~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~--~~~s~p~sp-------kvvRASaGAle-----~lp-v~~~~nl~~~L 461 (587)
+-+.-.+-.+-++=.|++-|.-+||+.++.. .++...+.. +.-|-...|.+ .+| +....++.+++
T Consensus 80 i~l~~~i~kg~k~d~iiqkatELGv~~i~p~~ter~~~k~~~~~~~kler~~ki~ieAaEQs~R~~vP~I~~~~~~~~~l 159 (246)
T COG1385 80 ITLAQAIPKGDKLELIIQKATELGVSKIIPLITERSVVKLDGKKAAKLERWQKIAIEAAEQSGRNVVPEIKPPESLKELL 159 (246)
T ss_pred EEEEEEcCccHHHHHHHHHHHHhCcceEEEEeeeeeEEeccccchhHHHHHHHHHHHHHHhcCCCcCCeeechhhHHHHH
Confidence 3444588899999999999999999999653 333333222 22233333332 233 44555777777
Q ss_pred HHhhhcCcEEEEEecCCCCccCCC-----CCCCCCEEEEEcCCCCCccHHHHHh
Q 007847 462 VSSAENGWRVLGGSVSSKAVPLNE-----IPPGQPTILVLGSEGTGLRPLVERS 510 (587)
Q Consensus 462 ~~Lke~G~~Vvgts~~~~a~~L~e-----v~~~~p~aLVLGnEg~GLS~~vl~~ 510 (587)
+.........+...... ...+.. .....+++|++|.|| |+|+.-++.
T Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~iiIGPEG-Gfs~~Ei~~ 211 (246)
T COG1385 160 KEIDDEDALKLIYEEKA-KEGLLALPLLEALPEGKVLLIIGPEG-GFSEDEIEL 211 (246)
T ss_pred Hhcccchhhhheecccc-ccccccchhhhcccCCcEEEEECCCC-CCCHHHHHH
Confidence 76654332223323221 122222 235689999999998 999864433
No 44
>PRK11713 16S ribosomal RNA methyltransferase RsmE; Provisional
Probab=63.35 E-value=47 Score=33.56 Aligned_cols=106 Identities=21% Similarity=0.312 Sum_probs=58.9
Q ss_pred EEEEEeCCCCcCcHHHHHHHHHHhCCCeEEEc--cCCCCCCc--------h---hHHHhc---cCceeEEeEEEecCHHH
Q 007847 396 LWVALDEVTDPQNLGAIIRSAYFFGASGVVLC--AKNSAPLS--------G---VVSKAS---SGSLELMELRYCNNMMQ 459 (587)
Q Consensus 396 l~LvLD~V~DPgNLGAIIRSA~AFGa~gVIL~--~~~s~p~s--------p---kvvRAS---aGAle~lpv~~~~nl~~ 459 (587)
+.|+ -.+-.|..+=-|++-|.-+||+.|++. .++...+. . +.++.+ +|-.....+....++.+
T Consensus 76 l~l~-~al~k~~~~e~il~k~tELGV~~i~p~~sers~~~~~~~~~~~k~~r~~~i~~~A~~Qs~r~~~P~i~~~~~~~~ 154 (234)
T PRK11713 76 LTLA-QALPKGDRLELILQKATELGVSAIIPLISERSVVKLDGERADKKLERWQKIAIEAAEQSGRTRIPEVRPPISLKE 154 (234)
T ss_pred EEEE-EeecCCccHHHHHHHHHHhCcCeEEEEEeccceecccchhhHHHHHHHHHHHHHHHHhcCCCCCCEEcCcCCHHH
Confidence 4444 467789999999999999999999764 32211111 1 112222 22222233444467777
Q ss_pred HHHHhhhcCcEEEEEecCCCCccCCCCCCCCCEEEEEcCCCCCccHHHHHh
Q 007847 460 FLVSSAENGWRVLGGSVSSKAVPLNEIPPGQPTILVLGSEGTGLRPLVERS 510 (587)
Q Consensus 460 ~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~p~aLVLGnEg~GLS~~vl~~ 510 (587)
+++...... + . . +....+.. ....++++++|.|| |.++.-++.
T Consensus 155 ~l~~~~~~~--~-~-~--~~~~~l~~-~~~~~i~viIGPEG-Gfs~~Ei~~ 197 (234)
T PRK11713 155 FLEELLPAD--L-K-A--GLKLVLHP-EAGGKVLLLIGPEG-GFSPEEIEL 197 (234)
T ss_pred HHhhccccc--c-c-h--hhhhhcCc-CCCCeEEEEECCCC-CCCHHHHHH
Confidence 776543221 1 0 1 00111111 12246899999998 999864443
No 45
>PTZ00222 60S ribosomal protein L7a; Provisional
Probab=57.90 E-value=57 Score=34.50 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=43.7
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEE-cCHHHHhhhhCCC
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKE-TSKHDLNMVVGNR 364 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~-Vs~~~Ld~Lsg~~ 364 (587)
+++|.+.|..+|+.+. ..-+++..+.. .......|..+|++.+|++.+ -++++|..+.+..
T Consensus 133 LvsG~n~VtkaIekkK--AkLVIIA~DVs---------Pie~vk~LpaLCrk~~VPY~iVktKaeLG~AIGkK 194 (263)
T PTZ00222 133 VVTGLQEVTRAIEKKQ--ARMVVIANNVD---------PVELVLWMPNLCRANKIPYAIVKDMARLGDAIGRK 194 (263)
T ss_pred eccCHHHHHHHHHcCC--ceEEEEeCCCC---------HHHHHHHHHHHHHhcCCCEEEECCHHHHHHHHCCC
Confidence 6999999999999986 44566665542 011122367899999999854 5888898887743
No 46
>TIGR00111 pelota probable translation factor pelota. This model describes the Drosophila protein Pelota, the budding yeast protein DOM34 which it can replace, and a set of closely related archaeal proteins. Members contain a proposed RNA binding motif. The meiotic defect in pelota mutants may be a complex result of a protein translation defect, as suggested in yeast by ribosomal protein RPS30A being a multicopy suppressor and by an altered polyribosome profile in DOM34 mutants rescued by RPS30A. This family is homologous to a family of peptide chain release factors. Pelota is proposed to act in protein translation.
Probab=57.33 E-value=24 Score=38.13 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=43.1
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCH
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSK 354 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~ 354 (587)
.+||..-|..|++.|. +..|++++++-. ....+.++++.+++.|.+|+.+|.
T Consensus 278 ~~YG~~eV~~Ale~GA--VetLLIsD~l~~--------~r~~~~~l~~~v~~~gg~V~i~Ss 329 (351)
T TIGR00111 278 AVYGEDEVVKAAEYGA--IEYLLVTDKVLV--------QREEIEKLLDSVESMGGKVVILST 329 (351)
T ss_pred EEECHHHHHHHHHcCC--ceEEEEecchhh--------hHHHHHHHHHHHHHcCCEEEEEcC
Confidence 5999999999999997 899999987621 123578899999999999998864
No 47
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=53.36 E-value=82 Score=29.35 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=46.3
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEc-CHHHHhhhhCCCC
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKET-SKHDLNMVVGNRP 365 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~V-s~~~Ld~Lsg~~~ 365 (587)
++.|.+-+..|++++. ..-+++.++.+- ..-...+..+|++.+||+..| ++.+|-+.++...
T Consensus 28 i~~G~~e~~Kai~~g~--a~LVviA~Dv~P---------~~~~~~l~~lc~~~~vpyv~V~sk~~LG~a~g~~~ 90 (116)
T COG1358 28 LKKGTNEVTKAIERGK--AKLVVIAEDVSP---------EELVKHLPALCEEKNVPYVYVGSKKELGKAVGKEV 90 (116)
T ss_pred chhhHHHHHHHHHcCC--CcEEEEecCCCH---------HHHHHHHHHHHHhcCCCEEEeCCHHHHHHHhCCCc
Confidence 5899999999999975 556777776430 112345678899999998654 8889988888654
No 48
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=52.41 E-value=76 Score=28.75 Aligned_cols=91 Identities=21% Similarity=0.356 Sum_probs=55.0
Q ss_pred HHHHHHHHhcCCcEEEcCHHHHhhhhCCCCCceEEEEecccccccccccCcccccccCCcEEEEEeCCCCcCcHHHHHHH
Q 007847 336 EKVLKMAENMGISIKETSKHDLNMVVGNRPHQGLVLDASPLEMVKIKELDPISADEDQASLWVALDEVTDPQNLGAIIRS 415 (587)
Q Consensus 336 ~~Il~la~e~gi~V~~Vs~~~Ld~Lsg~~~HQGVVa~a~pl~~~~i~eL~~~~~~~~~~~l~LvLD~V~DPgNLGAIIRS 415 (587)
..+++...+.|.+++.|.+.. +.+. |+- -+..+.+. + ..-.++++ ...|..+..+++-
T Consensus 17 ~~v~~~l~~~G~~v~~Vnp~~-~~i~------G~~------~y~sl~e~-p-----~~iDlavv---~~~~~~~~~~v~~ 74 (116)
T PF13380_consen 17 YRVLRNLKAAGYEVYPVNPKG-GEIL------GIK------CYPSLAEI-P-----EPIDLAVV---CVPPDKVPEIVDE 74 (116)
T ss_dssp HHHHHHHHHTT-EEEEESTTC-SEET------TEE-------BSSGGGC-S-----ST-SEEEE----S-HHHHHHHHHH
T ss_pred HHHHHHHHhCCCEEEEECCCc-eEEC------cEE------eeccccCC-C-----CCCCEEEE---EcCHHHHHHHHHH
Confidence 456777777999999997654 2222 221 13333332 1 12234444 3778999999999
Q ss_pred HHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEE
Q 007847 416 AYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLG 473 (587)
Q Consensus 416 A~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvg 473 (587)
|.+.|+..|++... ..-.++++.+++.|.+++|
T Consensus 75 ~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 75 AAALGVKAVWLQPG-------------------------AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp HHHHT-SEEEE-TT-------------------------S--HHHHHHHHHTT-EEEE
T ss_pred HHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHcCCEEEe
Confidence 99999999998765 2335677778888988887
No 49
>PRK02135 hypothetical protein; Provisional
Probab=47.87 E-value=81 Score=32.17 Aligned_cols=115 Identities=12% Similarity=0.130 Sum_probs=75.5
Q ss_pred CcCcHHHHHHHHHHhCCCeEEEccCCCCCCchhHHHhccCceeEEeEEEecCHHHHHHHhhhcCcEEEEEecCCCCccCC
Q 007847 405 DPQNLGAIIRSAYFFGASGVVLCAKNSAPLSGVVSKASSGSLELMELRYCNNMMQFLVSSAENGWRVLGGSVSSKAVPLN 484 (587)
Q Consensus 405 DPgNLGAIIRSA~AFGa~gVIL~~~~s~p~spkvvRASaGAle~lpv~~~~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ 484 (587)
|=.|+++.|+-|-.-+.+. ... ....++-| +-+ .-.++.+.|..+ ..|+++|-++. +..++.
T Consensus 79 DErs~a~~I~kAL~~~~~~------~~~----~~~e~~pG----i~V-~~~~fe~ll~~~-~e~~~l~~L~e--~G~~i~ 140 (201)
T PRK02135 79 DERSTAALIKKALDASEGM------IGE----QEREVTPG----IYV-RRRGFEDLLEEL-AEGKTLYYLHE--DGEDIR 140 (201)
T ss_pred cHHHHHHHHHHHHhccccc------ccc----cccccCCC----EEE-ecCCHHHHHHHH-hcCCcEEEEeC--CCCchh
Confidence 5678888888885444320 000 00112222 112 225788888888 66889998775 456777
Q ss_pred CCCCCCCEEEEEcCCCCCccHHHHHh----CCcEEEEcCCCCCCCcCCcccccccCCCCCCccccccCCCCCcccHHHHH
Q 007847 485 EIPPGQPTILVLGSEGTGLRPLVERS----CTHLVRIPGNIPVDVTAGEIDDVDADGNHGSAEQFQSFMAVESLNVSVAA 560 (587)
Q Consensus 485 ev~~~~p~aLVLGnEg~GLS~~vl~~----cD~~V~IPm~~~~~~~~G~~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAA 560 (587)
++.+..+.++||| ...|++++-.+. .+..|+|- -.+|=++.+.
T Consensus 141 ~~~~~~~~~FvLg-DH~~~~~ee~~~L~~~ga~~iSlG--------------------------------P~~l~AshcI 187 (201)
T PRK02135 141 DVEFPENPVFVLG-DHIGFTEEEENLLKRLGAEKISLG--------------------------------PKMLHADHCI 187 (201)
T ss_pred hccCCCCCEEEEe-CCCCCCHHHHHHHHHhCCeEEEeC--------------------------------cHHHHHHHHH
Confidence 8877777789999 788998865533 35666662 2488999999
Q ss_pred HHHHHHHHcC
Q 007847 561 GVLLHHLVGH 570 (587)
Q Consensus 561 gIlLYEl~rq 570 (587)
.++-++|=+.
T Consensus 188 ~~vhn~LD~~ 197 (201)
T PRK02135 188 TLIHNELDRR 197 (201)
T ss_pred HHHHHHHhhc
Confidence 9999988655
No 50
>PF04013 Methyltrn_RNA_2: Putative SAM-dependent RNA methyltransferase; InterPro: IPR007158 The proteins in this family are around 200 amino acids long with the exception of O29206 from SWISSPROT that has an additional 100 amino acids at its N terminus. The function of these bacterial protein is unknown, however, they do contain several conserved histidines and aspartates that might form a metal-binding site.; PDB: 2QMM_A 3AIA_A 3AI9_X 2QWV_B.
Probab=47.46 E-value=80 Score=32.16 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=52.9
Q ss_pred cCHHHHHHHhhhcCcEEEEEecCCCCccCCCCCCCC-CEEEEEcCCCCCccHHHHHh----CCcEEEEcCCCCCCCcCCc
Q 007847 455 NNMMQFLVSSAENGWRVLGGSVSSKAVPLNEIPPGQ-PTILVLGSEGTGLRPLVERS----CTHLVRIPGNIPVDVTAGE 529 (587)
Q Consensus 455 ~nl~~~L~~Lke~G~~Vvgts~~~~a~~L~ev~~~~-p~aLVLGnEg~GLS~~vl~~----cD~~V~IPm~~~~~~~~G~ 529 (587)
.++.+.++.+++. +++|-++. +..++.++.++. ..++||| ...|++++..+. .+..|+|-
T Consensus 113 ~~fe~ll~~~~~~-~~l~~L~e--~G~di~~~~~~~~d~~FVLg-DH~g~~~eee~~L~~~~a~kiSlG----------- 177 (199)
T PF04013_consen 113 GGFEDLLEELAEE-YPLYYLHE--DGEDIRDVEFPGNDPVFVLG-DHIGFTEEEEELLERLGAEKISLG----------- 177 (199)
T ss_dssp --HHHHHHHHHCT-SEEEEEST--TSEEGGGS---S-SEEEEEE--TT-SHHHHHHHHHCTTSEEEES------------
T ss_pred CCHHHHHHHHhcC-CcEEEEcC--CCCcHhhcccCCCCCeEEEe-CCCCCCHHHHHHHHHccCceEEeC-----------
Confidence 5788899988877 89998664 567899999887 8999999 678999865443 25566652
Q ss_pred ccccccCCCCCCccccccCCCCCcccHHHHHHHHHHHHHc
Q 007847 530 IDDVDADGNHGSAEQFQSFMAVESLNVSVAAGVLLHHLVG 569 (587)
Q Consensus 530 ~~~~~~~g~~~~~~~f~~~g~VeSLNVSVAAgIlLYEl~r 569 (587)
-.||=++.+..|+-+++=+
T Consensus 178 ---------------------P~~lhAdhcI~ivhn~LD~ 196 (199)
T PF04013_consen 178 ---------------------PKSLHADHCITIVHNELDR 196 (199)
T ss_dssp ---------------------SS---HHHHHHHHHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHHHHHhh
Confidence 2488999999999998854
No 51
>PRK04011 peptide chain release factor 1; Provisional
Probab=43.22 E-value=59 Score=36.05 Aligned_cols=60 Identities=23% Similarity=0.313 Sum_probs=42.9
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccc------cc--c---------c-------c--------ccchhHHHHHHH
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLS------SN--N---------R-------K--------KKDKKGYEKVLK 340 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS------~~--~---------r-------k--------~~d~~~~~~Il~ 340 (587)
.+||...|..||+.|. |..|++.+++... .+ . . . ....+.++.+++
T Consensus 297 avyG~~~V~~Ale~GA--VetLLV~d~l~~~r~~~~c~~c~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~v~~l~e 374 (411)
T PRK04011 297 AVYGEEEVRKALEMGA--VDTLLISEDLRKDRVTYKCPNCGYEEEKTVKRREELPEKTCPKCGSELEIVEEEDIIEELSE 374 (411)
T ss_pred EEEcHHHHHHHHHcCC--ceEEEEeccccceeEEEEcCCCCcceeeecccccccccccCcccCcccccchhhhHHHHHHH
Confidence 5999999999999996 8899998865320 00 0 0 0 001134677889
Q ss_pred HHHhcCCcEEEcCH
Q 007847 341 MAENMGISIKETSK 354 (587)
Q Consensus 341 la~e~gi~V~~Vs~ 354 (587)
.+++.|.+|++++.
T Consensus 375 ~a~~~g~~v~iis~ 388 (411)
T PRK04011 375 LAEQSGTKVEVIST 388 (411)
T ss_pred HHHHcCCEEEEECC
Confidence 99999999999986
No 52
>PRK09190 hypothetical protein; Provisional
Probab=41.71 E-value=1.1e+02 Score=31.57 Aligned_cols=67 Identities=18% Similarity=0.098 Sum_probs=45.1
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHh------cCCcE-EEcCHHHHhhhhCCCC
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAEN------MGISI-KETSKHDLNMVVGNRP 365 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e------~gi~V-~~Vs~~~Ld~Lsg~~~ 365 (587)
+|+|...|.++|+.+. +.-|++..+. |.+ ..+++..+|.. .+|++ ...++.+|....+. .
T Consensus 112 lVsG~~~V~~alk~gk--~~Lvi~A~Da--S~~--------t~kKl~~~~~~~~~~~~~~Vp~v~~~tk~eLg~AlGr-~ 178 (220)
T PRK09190 112 VVSGFEKVDAALRSGE--AAALIHASDG--AAD--------GKRKLDQARRALVHETGREIPVIGLFTAAELGLAFGR-E 178 (220)
T ss_pred EeecHHHHHHHHHcCC--ceEEEEeccC--Chh--------HHHHHHHHHHhhcccccCCccEEEecCHHHHHHHhCC-C
Confidence 5999999999999986 5555555543 211 23566777777 88886 45688899887774 2
Q ss_pred CceEEEE
Q 007847 366 HQGLVLD 372 (587)
Q Consensus 366 HQGVVa~ 372 (587)
+-.++++
T Consensus 179 ~~~~vav 185 (220)
T PRK09190 179 NVIHAAL 185 (220)
T ss_pred ceeEEEE
Confidence 3334443
No 53
>TIGR03676 aRF1/eRF1 peptide chain release factor 1, archaeal and eukaryotic forms. Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA. This model identifies both archaeal (aRF1) and eukaryotic (eRF1) of the protein. Also known as translation termination factor 1.
Probab=38.65 E-value=77 Score=35.15 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=43.1
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccc------c---cc---------------ccc--------cchhHHHHHHH
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLS------S---NN---------------RKK--------KDKKGYEKVLK 340 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS------~---~~---------------rk~--------~d~~~~~~Il~ 340 (587)
.+||...|.+||+.|. |..|++.+++... . +. ... ...+.++.+++
T Consensus 289 avyG~~eV~~ALe~GA--VetLLV~d~l~~~r~~~rc~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~L~e 366 (403)
T TIGR03676 289 AAYGEEEVRKALEMGA--VDTLLISEDLRKIRVTFKCPNCGYEEEKTVKPEEGDKSEACPKCGSELEIVEEEDIIEELSE 366 (403)
T ss_pred EEEcHHHHHHHHHhCC--CcEEEEEccccceeEEEEcCCCCcceeeecccccccccccCcccCcccccchhhhHHHHHHH
Confidence 5999999999999996 8899998876310 0 00 000 01124667888
Q ss_pred HHHhcCCcEEEcCHH
Q 007847 341 MAENMGISIKETSKH 355 (587)
Q Consensus 341 la~e~gi~V~~Vs~~ 355 (587)
.+++.|..|++++..
T Consensus 367 ~a~~~Ga~V~~iS~~ 381 (403)
T TIGR03676 367 LAEESGAKVEIISTD 381 (403)
T ss_pred HHHHcCCEEEEECCC
Confidence 999999999999864
No 54
>PF14419 SPOUT_MTase_2: AF2226-like SPOUT RNA Methylase fused to THUMP
Probab=33.82 E-value=1.8e+02 Score=29.11 Aligned_cols=105 Identities=16% Similarity=0.282 Sum_probs=70.3
Q ss_pred cHH-HHHHHHHHhCCCeEEEccCCCCC-Cc-h--------------hHHHhccC-ceeEEeEEEecCHHHHHHHhhhcCc
Q 007847 408 NLG-AIIRSAYFFGASGVVLCAKNSAP-LS-G--------------VVSKASSG-SLELMELRYCNNMMQFLVSSAENGW 469 (587)
Q Consensus 408 NLG-AIIRSA~AFGa~gVIL~~~~s~p-~s-p--------------kvvRASaG-Ale~lpv~~~~nl~~~L~~Lke~G~ 469 (587)
|+| .|-|.|-+|.+..+++..+.... +. - .+-|-|-| ....+|+.. -++-|++.+ .+|-
T Consensus 18 ~mGerIGRaaQ~FEV~eLiiap~~~vda~eL~~Fl~gV~~G~eSRy~iQ~ksY~r~v~kvpV~V-~DlYQ~vRd--R~~~ 94 (173)
T PF14419_consen 18 KMGERIGRAAQAFEVKELIIAPKEKVDAYELMEFLRGVREGQESRYQIQRKSYGREVRKVPVYV-QDLYQVVRD--RKGE 94 (173)
T ss_pred HHHHHHhHHHhhcchheEEEeccCccCHHHHHHHHHHHHHhHHHHHHHHHHhcCCeeeEeeeeH-HHHHHHHHh--cCCC
Confidence 455 47799999999999887654321 11 0 11122333 446788765 578888876 3566
Q ss_pred EEEEEecCCCCccCCCC--------CCCCCEEEEEcCCCCCccHHHHHhCCcEEEEc
Q 007847 470 RVLGGSVSSKAVPLNEI--------PPGQPTILVLGSEGTGLRPLVERSCTHLVRIP 518 (587)
Q Consensus 470 ~Vvgts~~~~a~~L~ev--------~~~~p~aLVLGnEg~GLS~~vl~~cD~~V~IP 518 (587)
.+|.+++.+ .++.++ ...+.+.+++|+- .|++.-+.+.||.+|-+-
T Consensus 95 ~lIvtdPkG--~~is~vk~~L~~~~r~~~eV~v~iGSR-eGiP~GlfRfAd~VvDla 148 (173)
T PF14419_consen 95 PLIVTDPKG--DPISEVKDKLAEDLRYAKEVVVFIGSR-EGIPRGLFRFADYVVDLA 148 (173)
T ss_pred eEEEECCCC--CcHHHHHHHHHHHHhhCcEEEEEEEcc-cCCChhHHHHhhhhhhcC
Confidence 788877643 344332 3456788889975 699999999999999884
No 55
>TIGR00108 eRF peptide chain release factor eRF/aRF, subunit 1. Alternative names include eRF1, SUP45, omnipotent suppressor protein 1.
Probab=28.15 E-value=1.4e+02 Score=33.22 Aligned_cols=61 Identities=28% Similarity=0.318 Sum_probs=42.8
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCcccc----cc----------c-----------------cccc-hhHHHHHHH
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSS----NN----------R-----------------KKKD-KKGYEKVLK 340 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~----~~----------r-----------------k~~d-~~~~~~Il~ 340 (587)
.+||...|..||+.|. |..|++.+++...+ .+ + .... ..-++.|++
T Consensus 293 avyG~~eV~~ALe~GA--VetLLV~d~l~~~r~~~r~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ve~L~e 370 (409)
T TIGR00108 293 ACYGEDEVLKALDLGA--VETLIVSEDLEYIRVTYKCAECGEVIEKTVRELKDKKFAICPACGQEMDVVEERDLIEWLSE 370 (409)
T ss_pred EEeCHHHHHHHHHhCC--CcEEEEeccccceeEEEEcCCCCceeecccccccccccccCcccCccccchhhhhHHHHHHH
Confidence 5999999999999996 88999998763100 00 0 0000 112466788
Q ss_pred HHHhcCCcEEEcCHH
Q 007847 341 MAENMGISIKETSKH 355 (587)
Q Consensus 341 la~e~gi~V~~Vs~~ 355 (587)
.+++.|..|++++..
T Consensus 371 ~a~~~Ga~V~iiS~~ 385 (409)
T TIGR00108 371 LAENFGAKLEFISTE 385 (409)
T ss_pred HHHHcCCEEEEECCC
Confidence 899999999999864
No 56
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=27.45 E-value=2.9e+02 Score=29.35 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=53.2
Q ss_pred CcHHHHHHH-HHHhCCCeEEEccCCC-CCCchhHHHhccCceeEEeEEEe--cCHHHHHHHhhhcCcEEEEEecCCCCcc
Q 007847 407 QNLGAIIRS-AYFFGASGVVLCAKNS-APLSGVVSKASSGSLELMELRYC--NNMMQFLVSSAENGWRVLGGSVSSKAVP 482 (587)
Q Consensus 407 gNLGAIIRS-A~AFGa~gVIL~~~~s-~p~spkvvRASaGAle~lpv~~~--~nl~~~L~~Lke~G~~Vvgts~~~~a~~ 482 (587)
.|+-.+++. ...+++|+||+++... .+-+..-++...-+.- +|++.. .+.....+.|+-..-.|+|++...+.+.
T Consensus 163 ~~~~~~v~dtver~~aDaVI~tG~~TG~~~d~~el~~a~~~~~-~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G~~ 241 (263)
T COG0434 163 RSLEEAVKDTVERGLADAVIVTGSRTGSPPDLEELKLAKEAVD-TPVLVGSGVNPENIEELLKIADGVIVGTSLKKGGVT 241 (263)
T ss_pred cCHHHHHHHHHHccCCCEEEEecccCCCCCCHHHHHHHHhccC-CCEEEecCCCHHHHHHHHHHcCceEEEEEEccCCEe
Confidence 388889998 7778899999987643 3445444444333333 787754 3455555556666668999998777666
Q ss_pred CCCCCC
Q 007847 483 LNEIPP 488 (587)
Q Consensus 483 L~ev~~ 488 (587)
.+.++.
T Consensus 242 ~n~VD~ 247 (263)
T COG0434 242 WNPVDL 247 (263)
T ss_pred cCccCH
Confidence 665553
No 57
>COG1537 PelA Predicted RNA-binding proteins [General function prediction only]
Probab=24.50 E-value=1.6e+02 Score=32.50 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=44.6
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHHHHHHHhcCCcEEEcCHH
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKVLKMAENMGISIKETSKH 355 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~Il~la~e~gi~V~~Vs~~ 355 (587)
..||..-|..|++-|. +..|++++++-.++. . .....+..+++.++..|.+|+.+|..
T Consensus 273 v~YG~~eV~~A~e~GA--ve~LLv~De~lr~~~-~--~~re~~~~ll~~ve~~ggkV~Ivs~~ 330 (352)
T COG1537 273 VAYGLEEVEKAAEYGA--VETLLVTDELLRSDD-V--EEREDVEELLEEVESMGGKVVIVSTE 330 (352)
T ss_pred eeEcHHHHHHHHhcCc--ceeEEeehhhhcccc-h--hhHHHHHHHHHHHHHcCCeEEEEecC
Confidence 4999999999999997 889999988643211 1 11245778899999999999988653
No 58
>PTZ00365 60S ribosomal protein L7Ae-like; Provisional
Probab=21.09 E-value=4e+02 Score=28.44 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=45.9
Q ss_pred eEEeHHHHHHHHhcCCCcccEEEEecCCccccccccccchhHHHHH-HHHHHhcCCcEEE-cCHHHHhhhhCCCCCceEE
Q 007847 293 GLYGVGPVLAALSAKTREFYALYVQEGLSLSSNNRKKKDKKGYEKV-LKMAENMGISIKE-TSKHDLNMVVGNRPHQGLV 370 (587)
Q Consensus 293 ~VyGv~~V~eAL~ag~r~i~~Lyv~e~~~lS~~~rk~~d~~~~~~I-l~la~e~gi~V~~-Vs~~~Ld~Lsg~~~HQGVV 370 (587)
+-+|++-|..+++.+. ..-+++..+.. .-....+ ..+|+..+|++.+ -++++|..+.+.. +..++
T Consensus 133 vk~Gin~VtklIekkK--AkLVIIA~DVs----------P~t~kk~LP~LC~k~~VPY~iv~sK~eLG~AIGkk-traVV 199 (266)
T PTZ00365 133 LKYGLNHVTDLVEYKK--AKLVVIAHDVD----------PIELVCFLPALCRKKEVPYCIIKGKSRLGKLVHQK-TAAVV 199 (266)
T ss_pred HHhhhHHHHHHHHhCC--ccEEEEeCCCC----------HHHHHHHHHHHHhccCCCEEEECCHHHHHHHhCCC-CceEE
Confidence 4799999999999986 45566666542 1122233 4899999999855 5788888877653 44555
Q ss_pred EE
Q 007847 371 LD 372 (587)
Q Consensus 371 a~ 372 (587)
++
T Consensus 200 AI 201 (266)
T PTZ00365 200 AI 201 (266)
T ss_pred Ee
Confidence 44
Done!