BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007848
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 212 DLDCKDLFSRNDPFLVIS-KIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSP 270
DL KD+F +DP++ +S + + + + +T+ +K P W F +V +
Sbjct: 32 DLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYF--RVNPSNHR 89
Query: 271 LIIECFNFNSNGKHDLIGKVQKSLADL 297
L+ E F+ N + D +G+V L+ L
Sbjct: 90 LLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 281
+DP++ + K++ + KT+ +++ P W F + KD L +E ++++
Sbjct: 38 SDPYVKL-KLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 96
Query: 282 GKHDLIGKVQKSLADLEKLHSSG 304
++D +G + +++L K+ +SG
Sbjct: 97 TRNDFMGSLSFGVSELMKMPASG 119
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 281
+DP++ + K++ + KT+ +++ P W F + KD L +E ++++
Sbjct: 37 SDPYVKL-KLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 95
Query: 282 GKHDLIGKVQKSLADLEKLHSSG 304
++D +G + +++L K+ +SG
Sbjct: 96 TRNDFMGSLSFGVSELMKMPASG 118
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 18/83 (21%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 281
+DP++ + K++ + KT+ +++ P W F + KD L +E ++++
Sbjct: 39 SDPYVKL-KLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPSDKDRRLSVEIWDWDRT 97
Query: 282 GKHDLIGKVQKSLADLEKLHSSG 304
++D G + +++L K +SG
Sbjct: 98 TRNDFXGSLSFGVSELXKXPASG 120
>pdb|1P4E|C Chain C, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|D Chain D, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 21 LSYNAAASSNDAVDWFLKSRGYLGLFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDG 80
+ YN +D D + S ++L F +++ D+ S S ML + +
Sbjct: 104 IPYNGQKHQSDITD----------IVSSLQLQFESSEEADKGN-SHSKKMLKALL-SEGE 151
Query: 81 ALVEVGRTEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLV 137
++ E+ TE +LNS T TK YQF + T + R D+ NVD K+ KLV
Sbjct: 152 SIWEI--TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLV 205
Query: 138 EQQFLG 143
+ ++LG
Sbjct: 206 QNKYLG 211
>pdb|1P4E|A Chain A, Flpe W330f Mutant-Dna Holliday Junction Complex
pdb|1P4E|B Chain B, Flpe W330f Mutant-Dna Holliday Junction Complex
Length = 429
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 21 LSYNAAASSNDAVDWFLKSRGYLGLFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDG 80
+ YN +D D + S ++L F +++ D+ S S ML + +
Sbjct: 104 IPYNGQKHQSDITD----------IVSSLQLQFESSEEADKGN-SHSKKMLKALL-SEGE 151
Query: 81 ALVEVGRTEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLV 137
++ E+ TE +LNS T TK YQF + T + R D+ NVD K+ KLV
Sbjct: 152 SIWEI--TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLV 205
Query: 138 EQQFLG 143
+ ++LG
Sbjct: 206 QNKYLG 211
>pdb|1M6X|C Chain C, Flpe-Holliday Junction Complex
pdb|1M6X|D Chain D, Flpe-Holliday Junction Complex
Length = 423
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 21 LSYNAAASSNDAVDWFLKSRGYLGLFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDG 80
+ YN +D D + S ++L F +++ D+ S S ML + +
Sbjct: 105 IPYNGQKHQSDITD----------IVSSLQLQFESSEEADKGN-SHSKKMLKALL-SEGE 152
Query: 81 ALVEVGRTEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLV 137
++ E+ TE +LNS T TK YQF + T + R D+ NVD K+ KLV
Sbjct: 153 SIWEI--TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLV 206
Query: 138 EQQFLG 143
+ ++LG
Sbjct: 207 QNKYLG 212
>pdb|1M6X|A Chain A, Flpe-Holliday Junction Complex
pdb|1M6X|B Chain B, Flpe-Holliday Junction Complex
Length = 423
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 58/126 (46%), Gaps = 21/126 (16%)
Query: 21 LSYNAAASSNDAVDWFLKSRGYLGLFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDG 80
+ YN +D D + S ++L F +++ D+ S S ML + +
Sbjct: 105 IPYNGQKHQSDITD----------IVSSLQLQFESSEEADKGN-SHSKKMLKALL-SEGE 152
Query: 81 ALVEVGRTEVVLNSLNPT-WITKHIITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLV 137
++ E+ TE +LNS T TK YQF + T + R D+ NVD K+ KLV
Sbjct: 153 SIWEI--TEKILNSFEYTSRFTKTKTLYQFLFLATFINCGRFSDIK----NVDPKSFKLV 206
Query: 138 EQQFLG 143
+ ++LG
Sbjct: 207 QNKYLG 212
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 281
+DP++ + K++ KT+ +K+ P W F + KD L +E ++++
Sbjct: 193 SDPYVKL-KLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 251
Query: 282 GKHDLIGKVQKSLADLEKLHSSG 304
++D +G + +++L+K G
Sbjct: 252 SRNDFMGSLSFGISELQKAGVDG 274
>pdb|1FLO|A Chain A, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|B Chain B, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|C Chain C, Flp Recombinase-Holliday Junction Complex I
pdb|1FLO|D Chain D, Flp Recombinase-Holliday Junction Complex I
Length = 422
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 11/102 (10%)
Query: 45 LFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPT-WITKH 103
+ S ++L F +++ D+ S S ML + + ++ E+ TE +LNS T TK
Sbjct: 118 IVSSLQLQFESSEEADKGN-SHSKKMLKALL-SEGESIWEI--TEKILNSFEYTSRFTKT 173
Query: 104 IITYQFEVVQTLVF--RIYDVDTQFHNVDVKTLKLVEQQFLG 143
YQF + T + R D+ NVD K+ KLV+ ++LG
Sbjct: 174 KTLYQFLFLATFINCGRFSDIK----NVDPKSFKLVQNKYLG 211
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 222 NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECFNFNSN 281
+DP++ + K++ KT+ +K P W F + KD L +E ++++
Sbjct: 52 SDPYVKL-KLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDLT 110
Query: 282 GKHDLIGKVQKSLADLEKLHSSG 304
++D +G + +++L+K G
Sbjct: 111 SRNDFMGSLSFGISELQKAGVDG 133
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVL 246
CG+++ S IL+ DL KD +DP++ I + + +T+V
Sbjct: 7 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF---QTKVH 63
Query: 247 KNETKPTWKSVF-LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKV 290
+ P + F ++ L ++F+ +HDLIG+V
Sbjct: 64 RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 108
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 44/105 (41%), Gaps = 4/105 (3%)
Query: 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVL 246
CG+++ S IL+ DL KD +DP++ I + + +T+V
Sbjct: 6 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF---QTKVH 62
Query: 247 KNETKPTWKSVF-LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKV 290
+ P + F ++ L ++F+ +HDLIG+V
Sbjct: 63 RKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQV 107
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 32.0 bits (71), Expect = 0.92, Method: Composition-based stats.
Identities = 23/101 (22%), Positives = 42/101 (41%), Gaps = 12/101 (11%)
Query: 58 LRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVF 117
L +D+L SDP + V + ++ +T+ + SLNP W + I+ ++F
Sbjct: 20 LAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKW-NEEILFRVLPQRHRILF 78
Query: 118 RIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR 158
++D + +L FLG+ L + T R
Sbjct: 79 EVFDEN-----------RLTRDDFLGQVDVPLYPLPTENPR 108
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 32.0 bits (71), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVG--------RTEVVLNSLNPTW----I 100
A +L RD SDP + VY+ G ++ V RT+ V SLNP W I
Sbjct: 25 LQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVI 84
Query: 101 TKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLS 150
K I Q + +TL ++D D + FLGE LS
Sbjct: 85 YKSISMEQL-MKKTLEVTVWDYD-----------RFSSNDFLGEVLIDLS 122
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 44/102 (43%), Gaps = 14/102 (13%)
Query: 58 LRDRDVLSKSDPMLVVYM-KARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLV 116
L +D+L SDP + V + +G L V +T+ + SLNP W + I+ L+
Sbjct: 32 LAKKDILGASDPYVRVTLYDPMNGVLTSV-QTKTIKKSLNPKW-NEEILFRVHPQQHRLL 89
Query: 117 FRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR 158
F ++D + +L FLG+ L + T R
Sbjct: 90 FEVFDEN-----------RLTRDDFLGQVDVPLYPLPTENPR 120
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 2/103 (1%)
Query: 195 EECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW 254
E+ NS+ ++ L KD+ +DP++ ++ + +T+ +K P W
Sbjct: 14 EDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKW 73
Query: 255 KSVFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297
L +V + L+ E F+ N + D +G+V L L
Sbjct: 74 NEEILF--RVHPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPL 114
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 55/128 (42%), Gaps = 19/128 (14%)
Query: 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTE 244
++ G++ T T I++ +L KD +DPF+ I + + + +T+
Sbjct: 10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKL---ETK 66
Query: 245 VLKNETKPTWKSVFLN--------IQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSL-- 294
V + P W FL +Q++ L ++ +++ ++D IG+V L
Sbjct: 67 VKRKNLNPHWNETFLFEGFPYEKVVQRI------LYLQVLDYDRFSRNDPIGEVSIPLNK 120
Query: 295 ADLEKLHS 302
DL ++ +
Sbjct: 121 VDLTQMQT 128
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 54/246 (21%), Positives = 100/246 (40%), Gaps = 42/246 (17%)
Query: 54 SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHI--ITYQFEV 111
AA+L D+ SDP + V++ E T+V +LNP + + + Y
Sbjct: 27 QAAELPALDMGGTSDPYVKVFLLPDKKKKFE---TKVHRKTLNPVFNEQFTFKVPYSELA 83
Query: 112 VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQI----VTRKNRSLTLDLVRR 167
+TLV +YD D +F D+ +GE ++ + VT + R L
Sbjct: 84 GKTLVMAVYDFD-RFSKHDI----------IGEFKVPMNTVDFGHVTEEWRDLQ------ 126
Query: 168 XXXXXXXXXXSNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLV 227
S + G + + T +IL +L D+ +DP++
Sbjct: 127 ----------SAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVK 176
Query: 228 ISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQVGSKDSPLIIECFNFNSNGKH 284
I ++++G + KT + KN P + F + +Q+ + +++ +++ GK+
Sbjct: 177 IH-LMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI--QKVQVVVTVLDYDKIGKN 233
Query: 285 DLIGKV 290
D IGKV
Sbjct: 234 DAIGKV 239
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 207 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 263
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 97 LGGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 207 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 263
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 40 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 96
Query: 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 97 LGGKT--LVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 140
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 20/106 (18%), Positives = 53/106 (50%), Gaps = 8/106 (7%)
Query: 207 ILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVF---LNIQQ 263
I++ ++L D+ +DP++ + + + +T+V + P + F + +
Sbjct: 48 IIQAAELPALDMGGTSDPYVKVFLLPDKKKKF---ETKVHRKTLNPVFNEQFTFKVPYSE 104
Query: 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309
+G K L++ ++F+ KHD+IG+ + + ++ H + + ++L
Sbjct: 105 LGGK--TLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDL 148
>pdb|2VK9|A Chain A, Crystal Structure Of The Catalytic Domain Of Alpha-Toxin
From Clostridium Novyi
Length = 551
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 55/112 (49%), Gaps = 12/112 (10%)
Query: 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG 488
YC+++ +PG+ ++ + + N + I A + + N+ KY +
Sbjct: 282 YCDLDFLPGVNLSLFNDISKPNGMDSNYWEAAIFEAIANEKKLMNNYPYKYM------EQ 335
Query: 489 VVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGR 540
V ++++E + V+ D ++ LI+ +G ++EIL + RL+++TG+
Sbjct: 336 VPSEIKERILSFVRNHD--INDLILPLGDIKISQLEILLS----RLKAATGK 381
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,022,553
Number of Sequences: 62578
Number of extensions: 656093
Number of successful extensions: 1428
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1416
Number of HSP's gapped (non-prelim): 34
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)