Query 007848
Match_columns 587
No_of_seqs 361 out of 2257
Neff 7.7
Searched_HMMs 46136
Date Thu Mar 28 16:09:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007848.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007848hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1327 Copine [Signal transdu 100.0 8E-116 2E-120 921.9 38.5 502 57-586 1-526 (529)
2 cd01459 vWA_copine_like VWA Co 100.0 3.6E-79 7.9E-84 606.8 22.3 247 318-574 3-254 (254)
3 PF07002 Copine: Copine; Inte 100.0 1.9E-53 4.1E-58 389.2 15.3 145 370-516 1-146 (146)
4 KOG1028 Ca2+-dependent phospho 100.0 4.4E-28 9.4E-33 259.6 18.3 215 53-296 174-393 (421)
5 PF10138 vWA-TerF-like: vWA fo 99.9 3.3E-25 7.2E-30 210.4 19.3 198 350-584 2-200 (200)
6 KOG2059 Ras GTPase-activating 99.8 1.9E-20 4.1E-25 200.7 16.8 311 49-403 7-337 (800)
7 cd01457 vWA_ORF176_type VWA OR 99.8 1.4E-18 3E-23 169.3 14.2 175 351-558 4-187 (199)
8 cd04048 C2A_Copine C2 domain f 99.8 1.8E-18 4E-23 154.5 13.1 112 48-166 2-114 (120)
9 cd08393 C2A_SLP-1_2 C2 domain 99.8 1.3E-18 2.8E-23 156.7 10.9 122 187-309 1-124 (125)
10 cd04047 C2B_Copine C2 domain s 99.8 3.6E-18 7.7E-23 150.1 12.1 107 203-311 2-110 (110)
11 cd04029 C2A_SLP-4_5 C2 domain 99.8 5.8E-18 1.3E-22 152.4 11.4 122 187-309 1-124 (125)
12 cd08677 C2A_Synaptotagmin-13 C 99.7 3.9E-18 8.5E-23 150.2 9.0 106 188-298 1-107 (118)
13 cd08381 C2B_PI3K_class_II C2 d 99.7 8E-18 1.7E-22 150.9 11.2 118 188-309 2-121 (122)
14 cd04028 C2B_RIM1alpha C2 domai 99.7 1.3E-17 2.8E-22 153.4 12.2 122 185-312 15-139 (146)
15 cd08682 C2_Rab11-FIP_classI C2 99.7 2.3E-17 5.1E-22 148.7 12.7 113 53-194 6-125 (126)
16 cd04016 C2_Tollip C2 domain pr 99.7 7.2E-17 1.6E-21 144.0 13.1 116 48-196 3-121 (121)
17 cd08385 C2A_Synaptotagmin-1-5- 99.7 3.9E-17 8.5E-22 146.7 11.3 120 187-309 2-122 (124)
18 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 6.6E-17 1.4E-21 145.1 12.5 119 203-330 2-121 (123)
19 cd08392 C2A_SLP-3 C2 domain fi 99.7 4.9E-17 1.1E-21 146.9 11.3 111 187-298 1-113 (128)
20 cd04042 C2A_MCTP_PRT C2 domain 99.7 1.3E-16 2.8E-21 142.8 13.9 117 49-196 2-119 (121)
21 cd08680 C2_Kibra C2 domain fou 99.7 3.4E-17 7.5E-22 146.8 10.2 111 189-299 2-113 (124)
22 cd04030 C2C_KIAA1228 C2 domain 99.7 6.2E-17 1.4E-21 145.9 11.3 122 187-309 2-126 (127)
23 cd08681 C2_fungal_Inn1p-like C 99.7 6.1E-17 1.3E-21 144.1 11.0 113 49-195 3-117 (118)
24 cd04036 C2_cPLA2 C2 domain pre 99.7 1.5E-16 3.3E-21 141.9 12.9 99 53-166 7-105 (119)
25 cd08406 C2B_Synaptotagmin-12 C 99.7 2.2E-17 4.9E-22 150.5 7.3 121 188-311 2-123 (136)
26 cd08387 C2A_Synaptotagmin-8 C2 99.7 9.9E-17 2.1E-21 144.1 11.3 120 187-309 2-122 (124)
27 cd04031 C2A_RIM1alpha C2 domai 99.7 9.3E-17 2E-21 144.3 10.9 121 187-309 2-124 (125)
28 cd08386 C2A_Synaptotagmin-7 C2 99.7 9.4E-17 2E-21 144.4 10.9 120 187-309 2-123 (125)
29 cd08395 C2C_Munc13 C2 domain t 99.7 1.7E-16 3.7E-21 141.3 12.3 106 49-166 2-112 (120)
30 cd08376 C2B_MCTP_PRT C2 domain 99.7 2.6E-16 5.6E-21 139.6 13.5 97 53-166 7-103 (116)
31 cd04025 C2B_RasA1_RasA4 C2 dom 99.7 2.1E-16 4.6E-21 141.8 13.0 120 49-194 2-122 (123)
32 cd04022 C2A_MCTP_PRT_plant C2 99.7 1.6E-16 3.4E-21 143.5 12.2 117 49-195 2-124 (127)
33 cd04009 C2B_Munc13-like C2 dom 99.7 1.3E-16 2.7E-21 145.4 11.4 113 187-299 2-118 (133)
34 cd04016 C2_Tollip C2 domain pr 99.7 2.3E-16 5E-21 140.8 12.3 114 201-330 2-118 (121)
35 cd04042 C2A_MCTP_PRT C2 domain 99.7 2.4E-16 5.3E-21 141.0 12.0 115 202-330 1-116 (121)
36 cd08682 C2_Rab11-FIP_classI C2 99.7 2.7E-16 5.7E-21 141.8 12.2 117 204-330 2-124 (126)
37 cd08521 C2A_SLP C2 domain firs 99.7 1.8E-16 4E-21 141.9 11.0 120 188-308 1-122 (123)
38 cd08404 C2B_Synaptotagmin-4 C2 99.7 1.5E-16 3.2E-21 145.5 10.3 122 187-311 1-123 (136)
39 cd08677 C2A_Synaptotagmin-13 C 99.7 1E-16 2.2E-21 141.2 8.8 102 47-164 14-118 (118)
40 cd04047 C2B_Copine C2 domain s 99.7 3.5E-16 7.6E-21 137.5 12.2 96 48-155 2-101 (110)
41 cd08393 C2A_SLP-1_2 C2 domain 99.7 1.6E-16 3.4E-21 143.1 9.9 106 47-164 15-124 (125)
42 cd08407 C2B_Synaptotagmin-13 C 99.7 1.3E-16 2.8E-21 145.6 9.1 108 188-296 2-112 (138)
43 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 2E-16 4.4E-21 148.7 10.7 112 187-299 1-126 (162)
44 cd08685 C2_RGS-like C2 domain 99.7 2.5E-16 5.5E-21 140.5 10.5 116 188-308 1-118 (119)
45 cd08379 C2D_MCTP_PRT_plant C2 99.7 5.7E-16 1.2E-20 139.2 12.7 106 49-166 2-111 (126)
46 cd08381 C2B_PI3K_class_II C2 d 99.7 2.9E-16 6.2E-21 140.8 10.4 105 47-164 13-121 (122)
47 cd04028 C2B_RIM1alpha C2 domai 99.7 5.6E-16 1.2E-20 142.5 12.3 107 47-166 29-138 (146)
48 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 9.7E-16 2.1E-20 139.3 13.6 122 50-196 3-132 (133)
49 cd08375 C2_Intersectin C2 doma 99.7 8.2E-16 1.8E-20 140.4 12.8 91 47-154 15-106 (136)
50 cd08379 C2D_MCTP_PRT_plant C2 99.7 5.7E-16 1.2E-20 139.2 11.5 114 203-329 2-125 (126)
51 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 1.1E-15 2.3E-20 139.0 13.2 120 203-330 2-129 (133)
52 cd08388 C2A_Synaptotagmin-4-11 99.7 8.3E-16 1.8E-20 139.0 12.3 109 187-298 2-113 (128)
53 cd04048 C2A_Copine C2 domain f 99.7 7.1E-16 1.5E-20 137.8 11.2 105 203-309 2-112 (120)
54 cd08390 C2A_Synaptotagmin-15-1 99.7 6.3E-16 1.4E-20 138.5 10.8 109 188-299 1-111 (123)
55 cd04029 C2A_SLP-4_5 C2 domain 99.7 5.7E-16 1.2E-20 139.5 10.4 107 47-165 15-125 (125)
56 cd04024 C2A_Synaptotagmin-like 99.6 1.9E-15 4.1E-20 136.3 13.6 119 49-195 3-127 (128)
57 cd08678 C2_C21orf25-like C2 do 99.6 1.5E-15 3.3E-20 136.9 12.9 118 53-200 6-123 (126)
58 cd04019 C2C_MCTP_PRT_plant C2 99.6 1.8E-15 3.9E-20 140.4 13.5 125 49-197 2-132 (150)
59 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 1.2E-15 2.7E-20 136.5 11.9 112 53-194 7-119 (121)
60 cd04010 C2B_RasA3 C2 domain se 99.6 1.5E-15 3.1E-20 140.5 12.6 128 49-193 2-146 (148)
61 cd08373 C2A_Ferlin C2 domain f 99.6 1.7E-15 3.6E-20 136.7 12.7 118 51-201 1-120 (127)
62 cd08395 C2C_Munc13 C2 domain t 99.6 9.2E-16 2E-20 136.6 10.7 96 203-299 2-100 (120)
63 cd08385 C2A_Synaptotagmin-1-5- 99.6 8.2E-16 1.8E-20 138.1 10.4 105 47-165 16-123 (124)
64 cd08681 C2_fungal_Inn1p-like C 99.6 1.4E-15 3E-20 135.3 11.7 112 202-330 2-115 (118)
65 cd04022 C2A_MCTP_PRT_plant C2 99.6 1.1E-15 2.4E-20 138.0 11.2 117 203-330 2-122 (127)
66 cd08377 C2C_MCTP_PRT C2 domain 99.6 1.5E-15 3.2E-20 135.3 11.8 113 202-330 2-115 (119)
67 cd04019 C2C_MCTP_PRT_plant C2 99.6 2.1E-15 4.5E-20 140.0 13.0 126 203-338 2-135 (150)
68 cd08389 C2A_Synaptotagmin-14_1 99.6 7.8E-16 1.7E-20 138.4 9.9 119 187-309 2-122 (124)
69 cd04041 C2A_fungal C2 domain f 99.6 9.2E-16 2E-20 135.1 10.1 100 49-165 3-107 (111)
70 COG5038 Ca2+-dependent lipid-b 99.6 7.6E-15 1.7E-19 166.0 19.9 103 200-311 1039-1142(1227)
71 cd08384 C2B_Rabphilin_Doc2 C2 99.6 3.3E-16 7.2E-21 142.5 7.5 119 190-311 2-121 (133)
72 cd08402 C2B_Synaptotagmin-1 C2 99.6 1E-15 2.3E-20 139.8 10.2 122 187-311 1-123 (136)
73 cd08382 C2_Smurf-like C2 domai 99.6 2.3E-15 4.9E-20 135.2 12.2 100 49-166 2-105 (123)
74 cd08387 C2A_Synaptotagmin-8 C2 99.6 1.5E-15 3.3E-20 136.4 11.0 105 47-165 16-123 (124)
75 KOG1030 Predicted Ca2+-depende 99.6 6.4E-16 1.4E-20 141.5 8.6 89 202-299 7-96 (168)
76 cd08408 C2B_Synaptotagmin-14_1 99.6 1.3E-15 2.7E-20 139.5 10.4 110 188-297 2-112 (138)
77 cd08405 C2B_Synaptotagmin-7 C2 99.6 1E-15 2.2E-20 139.9 9.6 122 187-311 1-123 (136)
78 cd04036 C2_cPLA2 C2 domain pre 99.6 1.5E-15 3.2E-20 135.5 10.4 111 203-329 2-113 (119)
79 KOG1030 Predicted Ca2+-depende 99.6 1E-15 2.2E-20 140.2 9.3 90 49-156 8-98 (168)
80 cd08680 C2_Kibra C2 domain fou 99.6 9E-16 1.9E-20 137.7 8.7 107 47-164 14-124 (124)
81 cd08375 C2_Intersectin C2 doma 99.6 2.5E-15 5.4E-20 137.3 11.7 92 200-299 14-106 (136)
82 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 2.8E-15 6.1E-20 134.2 11.8 112 53-194 7-119 (121)
83 cd08403 C2B_Synaptotagmin-3-5- 99.6 1.4E-15 3.1E-20 138.5 9.9 108 188-296 1-109 (134)
84 cd08401 C2A_RasA2_RasA3 C2 dom 99.6 4.5E-15 9.7E-20 132.9 12.6 115 203-330 2-118 (121)
85 cd08376 C2B_MCTP_PRT C2 domain 99.6 3E-15 6.5E-20 132.7 11.4 89 203-299 2-91 (116)
86 cd08391 C2A_C2C_Synaptotagmin_ 99.6 3.9E-15 8.5E-20 132.8 12.2 100 49-166 3-109 (121)
87 cd08410 C2B_Synaptotagmin-17 C 99.6 1.7E-15 3.7E-20 138.3 10.0 109 188-297 1-110 (135)
88 cd04031 C2A_RIM1alpha C2 domai 99.6 2.4E-15 5.1E-20 135.1 10.5 106 47-165 16-125 (125)
89 cd08377 C2C_MCTP_PRT C2 domain 99.6 6.9E-15 1.5E-19 130.9 13.4 114 49-195 3-117 (119)
90 cd04027 C2B_Munc13 C2 domain s 99.6 7E-15 1.5E-19 132.8 13.4 124 48-193 2-126 (127)
91 COG5038 Ca2+-dependent lipid-b 99.6 3.1E-14 6.7E-19 161.2 21.4 263 46-334 435-839 (1227)
92 cd04024 C2A_Synaptotagmin-like 99.6 5E-15 1.1E-19 133.5 12.3 118 202-330 2-125 (128)
93 cd08678 C2_C21orf25-like C2 do 99.6 5.2E-15 1.1E-19 133.4 12.1 115 203-330 1-116 (126)
94 cd08388 C2A_Synaptotagmin-4-11 99.6 4.5E-15 9.8E-20 134.2 11.7 105 47-165 16-127 (128)
95 KOG0696 Serine/threonine prote 99.6 5.2E-16 1.1E-20 158.6 6.1 124 183-311 164-288 (683)
96 cd08390 C2A_Synaptotagmin-15-1 99.6 3.9E-15 8.5E-20 133.4 11.1 105 47-165 14-122 (123)
97 cd08386 C2A_Synaptotagmin-7 C2 99.6 3.8E-15 8.2E-20 133.9 10.8 105 47-165 16-124 (125)
98 cd04046 C2_Calpain C2 domain p 99.6 5.9E-15 1.3E-19 133.1 12.0 114 202-330 4-118 (126)
99 cd04041 C2A_fungal C2 domain f 99.6 2.9E-15 6.4E-20 131.9 9.7 102 202-309 2-106 (111)
100 cd04030 C2C_KIAA1228 C2 domain 99.6 4.7E-15 1E-19 133.6 11.2 109 47-165 16-127 (127)
101 cd04026 C2_PKC_alpha_gamma C2 99.6 7.2E-15 1.6E-19 133.3 12.0 122 187-313 1-123 (131)
102 cd04035 C2A_Rabphilin_Doc2 C2 99.6 5.3E-15 1.1E-19 132.7 10.9 111 187-299 1-113 (123)
103 cd08688 C2_KIAA0528-like C2 do 99.6 4.1E-15 8.9E-20 130.8 10.0 97 53-166 6-109 (110)
104 cd08691 C2_NEDL1-like C2 domai 99.6 1.4E-14 3.1E-19 132.1 13.9 117 53-194 8-136 (137)
105 cd08409 C2B_Synaptotagmin-15 C 99.6 1.8E-15 4E-20 138.4 8.0 109 187-297 1-110 (137)
106 cd08392 C2A_SLP-3 C2 domain fi 99.6 4.3E-15 9.3E-20 134.2 10.3 106 47-164 15-127 (128)
107 cd04043 C2_Munc13_fungal C2 do 99.6 1.7E-14 3.6E-19 129.9 14.1 104 49-166 3-110 (126)
108 cd08378 C2B_MCTP_PRT_plant C2 99.6 7E-15 1.5E-19 131.6 11.3 107 53-195 7-118 (121)
109 cd08688 C2_KIAA0528-like C2 do 99.6 4.9E-15 1.1E-19 130.3 10.1 103 203-311 1-109 (110)
110 cd04032 C2_Perforin C2 domain 99.6 4.6E-15 1E-19 133.4 10.1 89 47-153 28-118 (127)
111 cd04010 C2B_RasA3 C2 domain se 99.6 6.9E-15 1.5E-19 135.9 11.5 108 203-313 2-124 (148)
112 cd08692 C2B_Tac2-N C2 domain s 99.6 5.4E-15 1.2E-19 133.4 10.4 107 189-297 2-110 (135)
113 cd04040 C2D_Tricalbin-like C2 99.6 1.2E-14 2.6E-19 128.6 12.4 98 53-166 6-103 (115)
114 cd04044 C2A_Tricalbin-like C2 99.6 9.5E-15 2E-19 130.9 11.9 117 49-197 4-123 (124)
115 cd04039 C2_PSD C2 domain prese 99.6 7.9E-15 1.7E-19 128.5 11.1 92 49-157 3-100 (108)
116 cd08685 C2_RGS-like C2 domain 99.6 4.8E-15 1E-19 132.2 9.9 106 47-164 12-119 (119)
117 cd04054 C2A_Rasal1_RasA4 C2 do 99.6 1.2E-14 2.7E-19 130.0 12.6 115 203-330 2-118 (121)
118 cd04039 C2_PSD C2 domain prese 99.6 6.8E-15 1.5E-19 128.9 10.6 91 202-299 2-97 (108)
119 cd08691 C2_NEDL1-like C2 domai 99.6 1.6E-14 3.5E-19 131.7 13.0 120 203-330 3-135 (137)
120 cd04017 C2D_Ferlin C2 domain f 99.6 2.1E-14 4.6E-19 131.0 13.4 117 49-198 3-133 (135)
121 cd08400 C2_Ras_p21A1 C2 domain 99.6 2.3E-14 4.9E-19 129.2 13.4 120 47-198 4-124 (126)
122 cd08382 C2_Smurf-like C2 domai 99.6 1.7E-14 3.6E-19 129.5 12.4 116 203-330 2-121 (123)
123 cd08521 C2A_SLP C2 domain firs 99.6 6.6E-15 1.4E-19 131.8 9.8 106 47-164 14-123 (123)
124 cd04046 C2_Calpain C2 domain p 99.6 2.3E-14 5.1E-19 129.2 13.2 117 47-195 3-120 (126)
125 KOG1013 Synaptic vesicle prote 99.6 6.2E-16 1.3E-20 153.9 3.1 222 53-297 100-329 (362)
126 cd04027 C2B_Munc13 C2 domain s 99.6 1.6E-14 3.5E-19 130.4 11.6 113 202-330 2-126 (127)
127 cd00276 C2B_Synaptotagmin C2 d 99.6 6.2E-15 1.3E-19 133.9 8.3 122 188-312 1-123 (134)
128 cd04015 C2_plant_PLD C2 domain 99.6 3.9E-14 8.4E-19 132.7 13.8 118 49-196 9-157 (158)
129 cd08391 C2A_C2C_Synaptotagmin_ 99.6 2.4E-14 5.2E-19 127.7 11.6 109 203-330 3-118 (121)
130 cd08373 C2A_Ferlin C2 domain f 99.5 3.7E-14 7.9E-19 128.0 11.8 110 206-329 1-111 (127)
131 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.5 2.2E-14 4.8E-19 134.9 10.3 108 47-166 27-138 (162)
132 cd08389 C2A_Synaptotagmin-14_1 99.5 2.3E-14 5E-19 128.8 9.9 104 47-165 16-123 (124)
133 cd04050 C2B_Synaptotagmin-like 99.5 2.8E-14 6.1E-19 124.4 10.1 94 53-166 7-102 (105)
134 cd08690 C2_Freud-1 C2 domain f 99.5 6.2E-14 1.3E-18 130.0 12.9 107 49-166 4-121 (155)
135 cd08384 C2B_Rabphilin_Doc2 C2 99.5 2.5E-14 5.5E-19 130.1 10.1 105 47-165 13-120 (133)
136 cd04051 C2_SRC2_like C2 domain 99.5 4.4E-14 9.5E-19 127.0 10.6 102 49-166 2-114 (125)
137 cd04021 C2_E3_ubiquitin_ligase 99.5 9.9E-14 2.2E-18 124.9 12.5 102 47-166 2-108 (125)
138 cd08378 C2B_MCTP_PRT_plant C2 99.5 4.5E-14 9.8E-19 126.4 10.1 108 203-329 2-115 (121)
139 cd04045 C2C_Tricalbin-like C2 99.5 7.9E-14 1.7E-18 124.6 11.5 102 203-313 3-105 (120)
140 cd04043 C2_Munc13_fungal C2 do 99.5 2.1E-13 4.5E-18 122.7 14.2 92 203-299 3-95 (126)
141 cd08404 C2B_Synaptotagmin-4 C2 99.5 1.1E-14 2.4E-19 133.0 6.0 106 47-166 15-123 (136)
142 cd08407 C2B_Synaptotagmin-13 C 99.5 4.6E-14 1E-18 128.8 10.0 93 47-151 15-112 (138)
143 cd04044 C2A_Tricalbin-like C2 99.5 8.6E-14 1.9E-18 124.6 11.4 115 202-330 3-119 (124)
144 cd08402 C2B_Synaptotagmin-1 C2 99.5 5.8E-14 1.2E-18 128.3 10.3 93 47-151 15-110 (136)
145 cd04017 C2D_Ferlin C2 domain f 99.5 9.5E-14 2.1E-18 126.7 11.5 118 202-334 2-131 (135)
146 cd04015 C2_plant_PLD C2 domain 99.5 1.3E-13 2.9E-18 129.1 12.7 116 201-329 7-153 (158)
147 cd04032 C2_Perforin C2 domain 99.5 4E-14 8.7E-19 127.4 8.6 90 201-298 28-118 (127)
148 cd08408 C2B_Synaptotagmin-14_1 99.5 8.3E-14 1.8E-18 127.5 10.8 95 46-151 14-111 (138)
149 cd08690 C2_Freud-1 C2 domain f 99.5 1.3E-13 2.9E-18 127.8 12.2 122 204-334 7-136 (155)
150 cd08406 C2B_Synaptotagmin-12 C 99.5 4E-14 8.7E-19 129.1 8.6 92 47-150 15-109 (136)
151 cd04014 C2_PKC_epsilon C2 doma 99.5 1.9E-13 4.1E-18 124.2 12.8 101 48-166 5-118 (132)
152 cd08676 C2A_Munc13-like C2 dom 99.5 1.4E-13 3E-18 127.8 12.0 103 46-164 27-153 (153)
153 cd04049 C2_putative_Elicitor-r 99.5 1E-13 2.2E-18 124.4 10.8 101 49-166 3-108 (124)
154 cd04009 C2B_Munc13-like C2 dom 99.5 8.3E-14 1.8E-18 126.8 10.1 98 47-155 16-119 (133)
155 cd04018 C2C_Ferlin C2 domain t 99.5 1.1E-13 2.4E-18 128.2 10.9 90 50-156 3-108 (151)
156 cd04037 C2E_Ferlin C2 domain f 99.5 7.4E-14 1.6E-18 125.6 9.3 87 53-154 7-93 (124)
157 cd04040 C2D_Tricalbin-like C2 99.5 1.4E-13 2.9E-18 121.9 10.8 90 203-299 1-91 (115)
158 cd04038 C2_ArfGAP C2 domain pr 99.5 1.2E-13 2.6E-18 127.3 10.6 90 49-157 4-94 (145)
159 cd04050 C2B_Synaptotagmin-like 99.5 1.2E-13 2.7E-18 120.3 9.9 97 203-310 2-101 (105)
160 cd08676 C2A_Munc13-like C2 dom 99.5 1.3E-13 2.7E-18 128.0 10.4 105 198-309 25-153 (153)
161 cd04026 C2_PKC_alpha_gamma C2 99.5 1.6E-13 3.5E-18 124.4 10.9 107 47-166 13-121 (131)
162 cd08675 C2B_RasGAP C2 domain s 99.5 1E-13 2.2E-18 126.9 9.6 100 53-166 6-120 (137)
163 cd04051 C2_SRC2_like C2 domain 99.5 1.3E-13 2.9E-18 123.8 10.2 115 203-329 2-125 (125)
164 cd08675 C2B_RasGAP C2 domain s 99.5 1.9E-13 4.2E-18 125.0 11.3 106 203-311 1-120 (137)
165 cd04018 C2C_Ferlin C2 domain t 99.5 1.1E-13 2.4E-18 128.2 9.8 90 203-299 2-106 (151)
166 cd04038 C2_ArfGAP C2 domain pr 99.5 1.5E-13 3.3E-18 126.6 10.2 88 202-299 3-91 (145)
167 cd08400 C2_Ras_p21A1 C2 domain 99.5 2.9E-13 6.2E-18 122.1 11.8 114 202-330 5-119 (126)
168 cd08405 C2B_Synaptotagmin-7 C2 99.5 1.3E-13 2.9E-18 125.9 9.6 104 47-164 15-121 (136)
169 cd04037 C2E_Ferlin C2 domain f 99.5 1.8E-13 3.9E-18 123.0 10.1 90 203-298 2-92 (124)
170 cd04035 C2A_Rabphilin_Doc2 C2 99.5 2.3E-13 4.9E-18 122.1 10.6 104 47-163 15-122 (123)
171 cd08410 C2B_Synaptotagmin-17 C 99.5 1.2E-13 2.6E-18 126.0 8.7 90 47-148 14-106 (135)
172 cd04045 C2C_Tricalbin-like C2 99.5 3.8E-13 8.3E-18 120.2 11.6 100 49-166 3-103 (120)
173 cd08403 C2B_Synaptotagmin-3-5- 99.5 1.1E-13 2.4E-18 126.1 8.2 104 47-164 14-120 (134)
174 cd04011 C2B_Ferlin C2 domain s 99.5 3E-13 6.5E-18 119.1 10.3 97 49-166 6-110 (111)
175 cd04049 C2_putative_Elicitor-r 99.5 3.9E-13 8.4E-18 120.7 11.1 102 202-309 2-106 (124)
176 cd04021 C2_E3_ubiquitin_ligase 99.5 5.9E-13 1.3E-17 119.8 12.0 89 202-300 3-92 (125)
177 KOG1028 Ca2+-dependent phospho 99.4 6.9E-13 1.5E-17 142.6 13.7 163 185-362 151-314 (421)
178 cd00276 C2B_Synaptotagmin C2 d 99.4 2.2E-13 4.8E-18 123.7 7.2 106 47-166 14-122 (134)
179 cd00275 C2_PLC_like C2 domain 99.4 2.7E-12 5.8E-17 115.6 14.0 120 48-195 3-126 (128)
180 cd04014 C2_PKC_epsilon C2 doma 99.4 1.2E-12 2.7E-17 118.9 11.7 109 201-330 4-125 (132)
181 cd08394 C2A_Munc13 C2 domain f 99.4 1.3E-12 2.8E-17 116.4 11.4 96 48-166 3-101 (127)
182 KOG0696 Serine/threonine prote 99.4 1.1E-13 2.4E-18 141.8 5.0 100 54-166 188-288 (683)
183 cd04011 C2B_Ferlin C2 domain s 99.4 5.9E-13 1.3E-17 117.2 8.1 89 201-299 4-95 (111)
184 cd08394 C2A_Munc13 C2 domain f 99.4 1.4E-12 2.9E-17 116.3 10.2 99 201-314 2-103 (127)
185 cd04052 C2B_Tricalbin-like C2 99.4 1.7E-12 3.7E-17 114.3 9.9 100 63-197 9-109 (111)
186 cd08409 C2B_Synaptotagmin-15 C 99.4 3.9E-13 8.5E-18 123.0 5.9 105 47-164 15-122 (137)
187 PLN03008 Phospholipase D delta 99.4 6.6E-12 1.4E-16 140.7 15.3 151 64-252 74-225 (868)
188 cd08686 C2_ABR C2 domain in th 99.4 2.7E-12 5.9E-17 112.9 9.6 83 203-295 1-91 (118)
189 cd08692 C2B_Tac2-N C2 domain s 99.3 3.9E-12 8.6E-17 114.9 9.7 94 47-152 14-110 (135)
190 cd00275 C2_PLC_like C2 domain 99.3 1.1E-11 2.5E-16 111.5 12.3 105 202-312 3-111 (128)
191 cd08686 C2_ABR C2 domain in th 99.3 8.6E-12 1.9E-16 109.7 9.8 86 53-150 6-91 (118)
192 cd08383 C2A_RasGAP C2 domain ( 99.3 3.6E-11 7.8E-16 106.5 12.3 111 50-195 3-116 (117)
193 cd04052 C2B_Tricalbin-like C2 99.3 3E-11 6.5E-16 106.4 11.6 95 218-330 9-105 (111)
194 cd04013 C2_SynGAP_like C2 doma 99.3 5.6E-11 1.2E-15 109.2 12.4 96 53-166 18-113 (146)
195 cd08383 C2A_RasGAP C2 domain ( 99.2 4E-11 8.8E-16 106.2 10.5 112 203-330 2-114 (117)
196 PLN03008 Phospholipase D delta 99.2 2.5E-11 5.4E-16 136.1 11.2 99 219-330 74-173 (868)
197 PF00168 C2: C2 domain; Inter 99.2 4E-11 8.7E-16 99.0 9.0 83 50-146 2-85 (85)
198 cd04013 C2_SynGAP_like C2 doma 99.2 1.1E-10 2.3E-15 107.3 12.5 116 200-329 10-134 (146)
199 cd08374 C2F_Ferlin C2 domain s 99.2 5.7E-11 1.2E-15 107.3 9.0 95 202-299 1-123 (133)
200 KOG1011 Neurotransmitter relea 99.2 1.5E-11 3.2E-16 130.9 5.9 115 43-166 291-406 (1283)
201 PLN03200 cellulose synthase-in 99.2 5.7E-11 1.2E-15 144.7 10.9 103 200-311 1979-2082(2102)
202 PF00168 C2: C2 domain; Inter 99.2 8.5E-11 1.8E-15 97.0 7.8 84 203-291 1-85 (85)
203 PLN03200 cellulose synthase-in 99.1 3.6E-10 7.8E-15 137.9 9.8 99 49-166 1982-2082(2102)
204 KOG1326 Membrane-associated pr 99.0 2.8E-10 6.1E-15 127.3 6.5 84 53-151 620-703 (1105)
205 cd08374 C2F_Ferlin C2 domain s 99.0 2.1E-09 4.6E-14 97.1 9.3 89 53-155 7-124 (133)
206 cd00030 C2 C2 domain. The C2 d 99.0 3.7E-09 8.1E-14 88.8 9.5 96 53-164 6-102 (102)
207 smart00239 C2 Protein kinase C 98.9 5.9E-09 1.3E-13 88.1 9.4 90 53-156 7-96 (101)
208 smart00239 C2 Protein kinase C 98.9 1.1E-08 2.4E-13 86.4 10.3 92 203-299 2-94 (101)
209 KOG1327 Copine [Signal transdu 98.9 2.9E-09 6.2E-14 114.4 7.8 129 45-193 135-266 (529)
210 cd00030 C2 C2 domain. The C2 d 98.9 1.8E-08 3.9E-13 84.6 10.6 88 204-298 2-90 (102)
211 KOG1011 Neurotransmitter relea 98.8 5E-09 1.1E-13 112.0 6.5 113 202-330 296-420 (1283)
212 KOG1328 Synaptic vesicle prote 98.7 4.5E-09 9.8E-14 113.9 1.7 128 53-194 121-298 (1103)
213 PLN02223 phosphoinositide phos 98.7 1.7E-07 3.7E-12 101.8 13.5 103 48-166 410-519 (537)
214 KOG1326 Membrane-associated pr 98.6 4.9E-08 1.1E-12 109.8 7.2 217 53-293 213-454 (1105)
215 PLN02952 phosphoinositide phos 98.6 4E-07 8.7E-12 100.9 13.1 104 47-166 470-581 (599)
216 PLN02223 phosphoinositide phos 98.6 2.5E-07 5.3E-12 100.6 10.5 106 201-312 409-520 (537)
217 KOG1328 Synaptic vesicle prote 98.5 3.1E-08 6.6E-13 107.6 2.7 111 187-298 933-1048(1103)
218 PLN02952 phosphoinositide phos 98.5 5.6E-07 1.2E-11 99.8 12.0 106 201-312 470-582 (599)
219 PLN02228 Phosphoinositide phos 98.5 7.2E-07 1.6E-11 98.3 12.3 127 202-340 432-566 (567)
220 PLN02270 phospholipase D alpha 98.5 1.8E-06 3.8E-11 97.7 14.9 190 49-280 10-234 (808)
221 KOG0905 Phosphoinositide 3-kin 98.5 1.1E-07 2.3E-12 108.1 5.2 120 185-309 1510-1633(1639)
222 cd01461 vWA_interalpha_trypsin 98.4 4.1E-06 8.9E-11 78.8 14.0 147 350-528 3-150 (171)
223 PLN02230 phosphoinositide phos 98.4 1.7E-06 3.7E-11 95.8 12.7 104 47-166 469-580 (598)
224 KOG2059 Ras GTPase-activating 98.4 3.8E-07 8.3E-12 99.5 7.5 115 202-330 6-121 (800)
225 KOG1031 Predicted Ca2+-depende 98.4 6.6E-07 1.4E-11 95.1 8.5 91 202-298 4-97 (1169)
226 PLN02230 phosphoinositide phos 98.4 1.3E-06 2.7E-11 96.8 10.2 106 201-312 469-581 (598)
227 smart00327 VWA von Willebrand 98.4 5.1E-06 1.1E-10 78.0 12.7 152 350-530 2-158 (177)
228 cd01471 vWA_micronemal_protein 98.3 4.7E-06 1E-10 80.0 12.1 156 350-529 1-160 (186)
229 cd01463 vWA_VGCC_like VWA Volt 98.3 1.6E-05 3.5E-10 76.7 15.3 156 348-528 12-177 (190)
230 PLN02222 phosphoinositide phos 98.3 3E-06 6.5E-11 93.8 11.3 87 64-166 476-563 (581)
231 PLN02270 phospholipase D alpha 98.3 5.1E-06 1.1E-10 94.1 13.2 86 220-314 45-132 (808)
232 PLN02228 Phosphoinositide phos 98.3 6E-06 1.3E-10 91.2 13.5 103 48-166 432-543 (567)
233 PLN02222 phosphoinositide phos 98.3 3.3E-06 7.2E-11 93.4 10.9 106 201-312 452-564 (581)
234 KOG0169 Phosphoinositide-speci 98.2 5.6E-06 1.2E-10 92.0 10.3 105 202-312 617-727 (746)
235 KOG0169 Phosphoinositide-speci 98.2 7.8E-06 1.7E-10 90.8 11.4 102 49-166 618-726 (746)
236 cd08689 C2_fungal_Pkc1p C2 dom 98.2 5.9E-06 1.3E-10 70.8 8.2 83 50-154 2-88 (109)
237 cd08689 C2_fungal_Pkc1p C2 dom 98.2 5.9E-06 1.3E-10 70.8 7.8 84 203-299 1-88 (109)
238 KOG1264 Phospholipase C [Lipid 98.1 1E-05 2.2E-10 89.4 9.8 99 53-166 1072-1171(1267)
239 cd01450 vWFA_subfamily_ECM Von 98.1 3.6E-05 7.7E-10 71.2 12.2 147 351-528 2-153 (161)
240 cd01466 vWA_C3HC4_type VWA C3H 98.1 5.5E-05 1.2E-09 70.5 12.5 145 350-529 1-146 (155)
241 cd00198 vWFA Von Willebrand fa 98.1 9.1E-05 2E-09 67.6 13.8 146 351-529 2-154 (161)
242 cd01465 vWA_subgroup VWA subgr 98.1 8.4E-05 1.8E-09 69.8 13.8 145 350-527 1-150 (170)
243 KOG1031 Predicted Ca2+-depende 98.1 6E-06 1.3E-10 88.0 6.3 90 48-154 4-98 (1169)
244 cd01464 vWA_subfamily VWA subf 98.0 2.5E-05 5.3E-10 74.4 9.7 148 349-529 3-160 (176)
245 cd01454 vWA_norD_type norD typ 98.0 0.00012 2.6E-09 69.5 13.6 141 351-519 2-154 (174)
246 cd01482 vWA_collagen_alphaI-XI 98.0 0.00018 3.8E-09 67.7 14.4 145 351-529 2-152 (164)
247 cd01480 vWA_collagen_alpha_1-V 97.9 0.00023 5.1E-09 68.4 13.3 150 348-529 1-162 (186)
248 PTZ00441 sporozoite surface pr 97.9 0.00045 9.7E-09 76.1 16.7 154 349-527 42-199 (576)
249 KOG0905 Phosphoinositide 3-kin 97.8 2E-05 4.3E-10 90.3 5.1 101 54-166 1532-1635(1639)
250 TIGR03788 marine_srt_targ mari 97.8 0.00025 5.4E-09 80.7 13.4 148 348-527 270-418 (596)
251 cd01456 vWA_ywmD_type VWA ywmD 97.8 0.00031 6.8E-09 68.6 12.3 165 347-529 18-191 (206)
252 cd01470 vWA_complement_factors 97.8 0.00029 6.4E-09 68.3 11.9 155 350-529 1-177 (198)
253 cd01476 VWA_integrin_invertebr 97.7 0.00044 9.5E-09 64.7 12.5 146 350-527 1-154 (163)
254 KOG1264 Phospholipase C [Lipid 97.7 0.00013 2.7E-09 81.1 9.3 94 203-299 1067-1162(1267)
255 KOG1013 Synaptic vesicle prote 97.6 6.6E-05 1.4E-09 76.0 5.6 86 52-149 239-326 (362)
256 cd01472 vWA_collagen von Wille 97.6 0.00056 1.2E-08 64.1 11.6 148 350-530 1-153 (164)
257 cd01473 vWA_CTRP CTRP for CS 97.6 0.0017 3.7E-08 62.8 15.0 154 351-529 2-161 (192)
258 PF13519 VWA_2: von Willebrand 97.6 0.0011 2.4E-08 61.7 13.3 146 351-527 1-148 (172)
259 cd01474 vWA_ATR ATR (Anthrax T 97.6 0.00088 1.9E-08 64.3 12.7 148 349-528 4-155 (185)
260 cd01477 vWA_F09G8-8_type VWA F 97.6 0.0017 3.8E-08 62.8 14.3 154 347-527 17-182 (193)
261 cd01453 vWA_transcription_fact 97.5 0.0019 4E-08 62.1 13.6 151 347-527 1-155 (183)
262 PF13768 VWA_3: von Willebrand 97.5 0.0011 2.5E-08 61.4 11.6 142 351-527 2-146 (155)
263 cd01451 vWA_Magnesium_chelatas 97.5 0.003 6.4E-08 60.2 14.1 144 352-527 3-154 (178)
264 cd01475 vWA_Matrilin VWA_Matri 97.4 0.0024 5.1E-08 63.4 13.6 145 350-528 3-156 (224)
265 cd01469 vWA_integrins_alpha_su 97.4 0.0024 5.2E-08 60.9 12.9 139 350-518 1-143 (177)
266 cd01462 VWA_YIEM_type VWA YIEM 97.4 0.0028 6E-08 58.6 12.7 133 351-518 2-135 (152)
267 cd01452 VWA_26S_proteasome_sub 97.4 0.0049 1.1E-07 59.2 14.1 166 352-556 6-176 (187)
268 cd01467 vWA_BatA_type VWA BatA 97.3 0.0037 7.9E-08 59.3 13.0 150 350-528 3-165 (180)
269 cd01460 vWA_midasin VWA_Midasi 97.3 0.0031 6.7E-08 63.9 12.7 142 349-518 60-205 (266)
270 PF00092 VWA: von Willebrand f 97.2 0.0033 7.2E-08 59.0 10.6 149 351-528 1-154 (178)
271 PLN02352 phospholipase D epsil 97.1 0.0042 9.1E-08 70.8 11.8 168 68-280 37-212 (758)
272 PRK13685 hypothetical protein; 97.1 0.008 1.7E-07 63.1 13.3 142 349-518 88-239 (326)
273 PLN02352 phospholipase D epsil 97.0 0.0054 1.2E-07 69.9 12.1 77 223-314 37-115 (758)
274 PLN02964 phosphatidylserine de 96.9 0.0015 3.2E-08 73.7 6.3 85 201-299 54-139 (644)
275 cd01481 vWA_collagen_alpha3-VI 96.9 0.03 6.6E-07 52.7 14.2 145 351-529 2-155 (165)
276 PLN02964 phosphatidylserine de 96.8 0.0017 3.6E-08 73.3 5.6 72 67-154 68-139 (644)
277 cd01458 vWA_ku Ku70/Ku80 N-ter 96.6 0.056 1.2E-06 53.2 14.6 153 351-519 3-174 (218)
278 TIGR02031 BchD-ChlD magnesium 96.6 0.031 6.7E-07 63.4 14.2 148 346-527 404-570 (589)
279 PRK13406 bchD magnesium chelat 96.6 0.035 7.5E-07 62.7 14.3 148 346-527 398-557 (584)
280 TIGR02442 Cob-chelat-sub cobal 96.5 0.045 9.7E-07 62.8 14.9 148 349-527 465-622 (633)
281 PF09967 DUF2201: VWA-like dom 96.4 0.0075 1.6E-07 54.3 6.3 109 352-514 1-111 (126)
282 TIGR03436 acidobact_VWFA VWFA- 96.4 0.054 1.2E-06 56.0 13.7 140 347-517 51-204 (296)
283 KOG2060 Rab3 effector RIM1 and 96.1 0.0029 6.4E-08 65.4 2.3 113 198-313 266-381 (405)
284 cd01455 vWA_F11C1-5a_type Von 96.1 0.055 1.2E-06 52.0 10.5 156 351-527 2-162 (191)
285 KOG3837 Uncharacterized conser 96.1 0.0095 2.1E-07 62.2 5.5 109 47-166 367-487 (523)
286 cd08683 C2_C2cd3 C2 domain fou 95.3 0.037 8.1E-07 49.3 5.5 94 68-164 34-143 (143)
287 KOG3837 Uncharacterized conser 95.2 0.023 4.9E-07 59.5 4.7 120 202-329 368-498 (523)
288 cd08683 C2_C2cd3 C2 domain fou 94.8 0.095 2.1E-06 46.8 6.8 75 223-299 34-132 (143)
289 TIGR00868 hCaCC calcium-activa 94.7 0.63 1.4E-05 54.6 14.9 152 342-527 298-450 (863)
290 cd08684 C2A_Tac2-N C2 domain f 94.5 0.061 1.3E-06 44.7 4.5 87 205-298 3-93 (103)
291 KOG2060 Rab3 effector RIM1 and 94.5 0.043 9.3E-07 57.0 4.4 105 49-166 271-379 (405)
292 PRK10997 yieM hypothetical pro 94.3 0.69 1.5E-05 50.9 13.5 143 348-527 322-468 (487)
293 PF11775 CobT_C: Cobalamin bio 93.8 0.72 1.6E-05 45.1 11.1 148 349-517 12-187 (219)
294 cd08397 C2_PI3K_class_III C2 d 93.7 0.19 4E-06 47.2 6.7 76 220-297 28-107 (159)
295 PF12416 DUF3668: Cep120 prote 92.3 0.51 1.1E-05 49.6 8.2 101 203-312 2-114 (340)
296 PF05762 VWA_CoxE: VWA domain 92.3 1.1 2.3E-05 44.4 10.3 118 349-504 57-176 (222)
297 cd08684 C2A_Tac2-N C2 domain f 92.1 0.14 3E-06 42.6 2.9 84 53-153 6-93 (103)
298 cd08398 C2_PI3K_class_I_alpha 91.6 0.81 1.7E-05 42.8 7.9 91 202-298 9-107 (158)
299 cd08380 C2_PI3K_like C2 domain 90.7 0.81 1.8E-05 42.5 7.1 76 221-298 27-108 (156)
300 cd08693 C2_PI3K_class_I_beta_d 90.5 0.97 2.1E-05 43.0 7.5 93 202-298 9-121 (173)
301 KOG1265 Phospholipase C [Lipid 90.2 0.24 5.2E-06 56.6 3.5 88 49-155 705-797 (1189)
302 PF00792 PI3K_C2: Phosphoinosi 88.5 1.6 3.5E-05 39.8 7.2 73 224-298 4-86 (142)
303 TIGR01651 CobT cobaltochelatas 88.2 3.2 7E-05 46.4 10.3 158 342-518 385-568 (600)
304 PF15627 CEP76-C2: CEP76 C2 do 87.6 3.3 7.2E-05 38.5 8.5 108 65-199 30-152 (156)
305 PF14429 DOCK-C2: C2 domain in 87.1 7.4 0.00016 37.2 11.1 63 81-151 56-120 (184)
306 KOG1265 Phospholipase C [Lipid 86.9 0.74 1.6E-05 52.8 4.4 90 201-299 703-796 (1189)
307 cd08399 C2_PI3K_class_I_gamma 86.4 2.7 5.8E-05 40.1 7.4 73 223-297 31-122 (178)
308 cd08397 C2_PI3K_class_III C2 d 85.9 2 4.2E-05 40.3 6.2 75 65-151 28-106 (159)
309 cd04012 C2A_PI3K_class_II C2 d 83.9 2.5 5.5E-05 40.0 6.1 95 202-298 9-120 (171)
310 COG1240 ChlD Mg-chelatase subu 83.9 6.3 0.00014 39.6 8.9 139 350-519 79-224 (261)
311 cd08695 C2_Dock-B C2 domains f 82.7 10 0.00022 36.5 9.6 71 47-124 23-95 (189)
312 COG2425 Uncharacterized protei 82.6 8.2 0.00018 42.0 9.9 129 349-513 272-404 (437)
313 COG4548 NorD Nitric oxide redu 80.8 6.2 0.00013 43.4 8.1 156 348-529 445-612 (637)
314 PF15627 CEP76-C2: CEP76 C2 do 79.8 31 0.00067 32.2 11.3 103 220-330 30-146 (156)
315 cd08694 C2_Dock-A C2 domains f 79.5 16 0.00034 35.4 9.7 71 47-124 23-95 (196)
316 PF10358 NT-C2: N-terminal C2 79.0 48 0.001 29.8 12.6 70 86-166 40-120 (143)
317 cd08697 C2_Dock-D C2 domains f 78.5 12 0.00026 35.9 8.6 73 47-124 24-98 (185)
318 cd08380 C2_PI3K_like C2 domain 78.2 6.1 0.00013 36.6 6.4 76 66-151 27-106 (156)
319 cd08696 C2_Dock-C C2 domains f 77.6 16 0.00036 34.8 9.1 74 47-125 22-97 (179)
320 PF14429 DOCK-C2: C2 domain in 74.7 20 0.00042 34.2 9.1 60 237-296 57-120 (184)
321 cd08399 C2_PI3K_class_I_gamma 74.6 15 0.00032 35.1 8.0 77 47-124 10-89 (178)
322 PF12416 DUF3668: Cep120 prote 73.1 17 0.00036 38.4 8.6 99 49-166 2-113 (340)
323 PF00792 PI3K_C2: Phosphoinosi 73.0 12 0.00026 34.1 6.8 57 85-152 21-85 (142)
324 cd08679 C2_DOCK180_related C2 72.8 23 0.0005 33.7 8.9 42 84-125 52-95 (178)
325 PF10358 NT-C2: N-terminal C2 71.8 74 0.0016 28.5 11.8 52 249-300 49-107 (143)
326 COG3864 Uncharacterized protei 71.2 12 0.00025 38.6 6.6 120 341-516 250-373 (396)
327 cd08398 C2_PI3K_class_I_alpha 70.5 21 0.00045 33.4 7.8 93 47-151 8-105 (158)
328 cd08693 C2_PI3K_class_I_beta_d 69.6 16 0.00035 34.6 7.0 76 47-124 8-87 (173)
329 PF04056 Ssl1: Ssl1-like; Int 69.4 60 0.0013 31.4 10.9 132 378-527 13-149 (193)
330 smart00142 PI3K_C2 Phosphoinos 67.9 15 0.00032 31.4 5.9 58 222-281 32-93 (100)
331 PF03731 Ku_N: Ku70/Ku80 N-ter 66.8 41 0.0009 32.8 9.7 153 352-515 2-172 (224)
332 cd08687 C2_PKN-like C2 domain 63.6 24 0.00052 29.8 5.9 65 65-151 7-71 (98)
333 cd04012 C2A_PI3K_class_II C2 d 59.2 29 0.00063 32.8 6.6 101 47-151 8-118 (171)
334 smart00142 PI3K_C2 Phosphoinos 54.8 70 0.0015 27.2 7.7 71 53-124 18-92 (100)
335 KOG2353 L-type voltage-depende 54.2 1.1E+02 0.0024 37.4 11.7 171 324-523 204-381 (1104)
336 COG4245 TerY Uncharacterized p 51.3 63 0.0014 31.1 7.2 81 448-528 72-160 (207)
337 KOG4428 Inositol-polyphosphate 50.9 26 0.00057 39.3 5.3 76 46-125 34-111 (813)
338 cd08695 C2_Dock-B C2 domains f 45.4 44 0.00096 32.2 5.4 56 238-295 52-112 (189)
339 PF14909 SPATA6: Spermatogenes 42.8 1.3E+02 0.0029 27.5 7.7 87 49-153 2-100 (140)
340 PF15625 CC2D2AN-C2: CC2D2A N- 42.5 1E+02 0.0022 29.0 7.4 68 223-299 38-108 (168)
341 COG4822 CbiK Cobalamin biosynt 41.7 1E+02 0.0022 30.4 7.1 125 380-523 117-248 (265)
342 cd08679 C2_DOCK180_related C2 41.5 66 0.0014 30.5 6.1 56 240-296 54-115 (178)
343 cd08694 C2_Dock-A C2 domains f 38.7 80 0.0017 30.6 6.0 57 237-295 51-114 (196)
344 PF11618 DUF3250: Protein of u 38.4 46 0.00099 29.0 4.0 58 240-299 12-75 (107)
345 PF15625 CC2D2AN-C2: CC2D2A N- 38.0 1.1E+02 0.0024 28.8 6.8 69 66-152 36-106 (168)
346 cd08696 C2_Dock-C C2 domains f 37.7 86 0.0019 30.0 6.1 60 237-296 52-118 (179)
347 cd08697 C2_Dock-D C2 domains f 37.5 1.4E+02 0.0031 28.6 7.6 60 237-296 54-123 (185)
348 PF11618 DUF3250: Protein of u 34.2 1.3E+02 0.0028 26.2 6.1 64 84-160 11-81 (107)
349 PF07162 B9-C2: Ciliary basal 33.8 2.1E+02 0.0045 26.8 8.1 76 65-152 15-104 (168)
350 KOG1329 Phospholipase D1 [Lipi 32.1 73 0.0016 37.6 5.4 85 222-314 138-224 (887)
351 cd08687 C2_PKN-like C2 domain 29.1 1.5E+02 0.0032 25.3 5.2 65 220-297 7-72 (98)
352 PF14924 DUF4497: Protein of u 28.4 1.7E+02 0.0037 25.4 6.0 31 268-298 28-61 (112)
353 KOG1452 Predicted Rho GTPase-a 28.1 1.2E+02 0.0025 31.5 5.4 70 49-125 53-125 (442)
354 PF12843 DUF3820: Protein of u 28.1 38 0.00081 26.8 1.6 28 550-584 14-41 (67)
355 COG5271 MDN1 AAA ATPase contai 27.4 4.7E+02 0.01 34.4 10.8 147 349-527 4392-4543(4600)
356 KOG1202 Animal-type fatty acid 26.9 81 0.0018 38.6 4.6 67 432-503 2161-2232(2376)
357 COG5618 Predicted periplasmic 26.2 59 0.0013 30.6 2.7 17 542-558 132-148 (206)
358 KOG2807 RNA polymerase II tran 25.6 2.5E+02 0.0054 29.3 7.2 147 342-519 53-205 (378)
359 smart00187 INB Integrin beta s 25.4 2.3E+02 0.0049 30.9 7.4 124 347-491 97-242 (423)
360 KOG0906 Phosphatidylinositol 3 25.2 86 0.0019 35.7 4.2 44 252-296 77-123 (843)
361 PF07162 B9-C2: Ciliary basal 24.6 3.9E+02 0.0084 25.0 8.1 76 219-295 14-102 (168)
362 TIGR02493 PFLA pyruvate format 23.0 3.7E+02 0.0081 26.2 8.2 70 447-527 67-138 (235)
363 TIGR00381 cdhD CO dehydrogenas 22.3 1.7E+02 0.0037 31.4 5.7 56 466-524 143-207 (389)
364 KOG2737 Putative metallopeptid 21.9 89 0.0019 33.3 3.4 93 341-453 228-323 (492)
365 PF02601 Exonuc_VII_L: Exonucl 20.9 3.8E+02 0.0083 27.7 8.0 87 430-522 23-122 (319)
366 KOG0781 Signal recognition par 20.6 2E+02 0.0043 31.9 5.8 89 456-558 450-543 (587)
No 1
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-116 Score=921.93 Aligned_cols=502 Identities=48% Similarity=0.784 Sum_probs=458.7
Q ss_pred CCCCCCCCCCCCcEEEEEEec-------------CCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcC
Q 007848 57 DLRDRDVLSKSDPMLVVYMKA-------------RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVD 123 (587)
Q Consensus 57 nL~~~D~~gksDPyv~v~~~~-------------~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D 123 (587)
+|.+.|..+++||.|.+.... .++.|.+.+||+++.+.+||.|.++|.+.|.||+.|.|+|.+||.+
T Consensus 1 ~~~~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 1 NLMAYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDID 80 (529)
T ss_pred CccccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechhheeeeeeeEEEEEeecC
Confidence 356778889999999987742 3455778899999999999999999999999999999999999998
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecceecccccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTT 203 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~~~l 203 (587)
+. +.++..+||+|++.|.+++++.......-+-+++ . +....|+|.+.+++.......
T Consensus 81 ~~-------~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-----------~----~~~~~g~iti~aee~~~~~~~ 138 (529)
T KOG1327|consen 81 SR-------TPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-----------G----KNAGSGTITISAEEDESDNDV 138 (529)
T ss_pred Cc-------cCCcchhcccceeeeehhhhhhhhhhhhhhhccc-----------C----ccCCcccEEEEeecccccCce
Confidence 75 2367889999999999999987654433222322 1 235689999999998888888
Q ss_pred ceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceeeceEEeeec--CCCCCcEEEEEEeccCC
Q 007848 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQV--GSKDSPLIIECFNFNSN 281 (587)
Q Consensus 204 ~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wnef~~~~~~l--~~~~~~L~i~V~D~d~~ 281 (587)
+...++|++|.++|+++++|||..++...++|++..+|+|+++++++||.|.+|.++.+.+ .+.+.+++++|||++..
T Consensus 139 ~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d~~~~ 218 (529)
T KOG1327|consen 139 VQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYDYDSN 218 (529)
T ss_pred eeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEeccCCC
Confidence 8999999999999999999999999998878999999999999999999999999999888 56689999999999999
Q ss_pred CCCceeEEEEEechhhhhccCCCceeEeecccccCC-CCcccccccEEEeEeeeeeeeeeeccccCcceEEEEEEecccc
Q 007848 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGN-NNHKILNSQLFVDKFSESVQYTFLDYLAGGFELNFMVAVDFTA 360 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k-~~~~~~~G~i~l~~~~~~~~~sFldyi~~g~~~~~~~aiDft~ 360 (587)
++|++||++..++.++.. .+....+.+++++++.| ++|++ +|++.+..|+....+||+|||+||+++||+||||||+
T Consensus 219 ~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~~~~~~~~k~~k~-~g~~~l~~~~~~~~~sfld~i~gg~~lnf~vgIDfTa 296 (529)
T KOG1327|consen 219 GKHDLIGKFQTTLSELQE-PGSPNQIMLINPKKKAKKKSYKN-SGQLILDRFTSLDQYSFLDYIAGGEQLNFTVGIDFTA 296 (529)
T ss_pred CCcCceeEecccHHHhcc-cCCcccccccChhhhhhhhcccc-cceEEehheeehhhhhHHHHHccCceeeeEEEEEEec
Confidence 999999999999999975 55567889999988654 46777 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeeccc-CCCCCceeEEeCCCCCCCCcccCHHHHH
Q 007848 361 SNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIM 439 (587)
Q Consensus 361 sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~-~~~~~~~~~f~l~~~~~~p~~~g~~~i~ 439 (587)
|||+|+.+.|||||+|. ++|+|++||++||++|++||+|++||+|||||+ |+++.+||||+||+++.||+|.|++||+
T Consensus 297 SNg~p~~~sSLHyi~p~-~~N~Y~~Ai~~vG~~lq~ydsdk~fpa~GFGakip~~~~vs~~f~ln~~~~~~~c~Gi~gVl 375 (529)
T KOG1327|consen 297 SNGDPRNPSSLHYIDPH-QPNPYEQAIRSVGETLQDYDSDKLFPAFGFGAKIPPDGQVSHEFVLNFNPEDPECRGIEGVL 375 (529)
T ss_pred cCCCCCCCCcceecCCC-CCCHHHHHHHHHhhhhcccCCCCccccccccccCCCCcccccceeecCCCCCCccccHHHHH
Confidence 99999999999999996 899999999999999999999999999999999 7889999999999999999999999999
Q ss_pred HHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCC
Q 007848 440 MAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGAD 519 (587)
Q Consensus 440 ~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlSiiiVGvG~~~ 519 (587)
+||++++++|+|+|||+|||||++|+++|+++.. +..+||||||||||+|+||++|++|||.||+|||||||||||++|
T Consensus 376 ~aY~~~lp~v~l~GPTnFaPII~~va~~a~~~~~-~~~qY~VLlIitDG~vTdm~~T~~AIV~AS~lPlSIIiVGVGd~d 454 (529)
T KOG1327|consen 376 EAYRKALPNVQLYGPTNFSPIINHVARIAQQSGN-TAGQYHVLLIITDGVVTDMKETRDAIVSASDLPLSIIIVGVGDAD 454 (529)
T ss_pred HHHHhhcccccccCCCccHHHHHHHHHHHHHhcc-CCcceEEEEEEeCCccccHHHHHHHHHhhccCCeEEEEEEeCCCC
Confidence 9999999999999999999999999999998764 778999999999999999999999999999999999999999999
Q ss_pred chhhhhcccCCCcccccCCCCccccceeeeeeCcccCCc-------HHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q 007848 520 FKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQNG-------EISVVQALLAELPSQFLTYMRTRDIQPS 586 (587)
Q Consensus 520 f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~~~-------~~~l~~~~L~eiP~q~~~y~~~~~~~P~ 586 (587)
|+.|++||+|. .+|+++ ||.++|||||||+|+++++. ..+||+.+|+|||+|+++||+.+||.|.
T Consensus 455 f~~M~~lD~d~-~~l~~~-gr~~~rD~vQFV~f~~~~~~~~~~~~~~~~lA~~vL~EIP~Q~~~y~~~~~~~p~ 526 (529)
T KOG1327|consen 455 FDMMRELDGDD-PKLRSP-GRIAERDNVQFVPFRDIMNGAENPSDKEAALALAVLAEIPQQYVQYMRLRGILPK 526 (529)
T ss_pred HHHHHHhhcCC-cccccc-cccccccceEeecHHHHhhcCCcccchhHHHHHHHHHHhhHHHHHHHHhcCCCCC
Confidence 99999999887 676665 99999999999999999874 7899999999999999999999999985
No 2
>cd01459 vWA_copine_like VWA Copine: Copines are phospholipid-binding proteins originally identified in paramecium. They are found in human and orthologues have been found in C. elegans and Arabidopsis Thaliana. None have been found in D. Melanogaster or S. Cereviciae. Phylogenetic distribution suggests that copines have been lost in some eukaryotes. No functional properties have been assigned to the VWA domains present in copines. The members of this subgroup contain a functional MIDAS motif based on their preferential binding to magnesium and manganese. However, the MIDAS motif is not totally conserved, in most cases the MIDAS consists of the sequence DxTxS instead of the motif DxSxS that is found in most cases. The C2 domains present in copines mediate phospholipid binding.
Probab=100.00 E-value=3.6e-79 Score=606.83 Aligned_cols=247 Identities=51% Similarity=0.753 Sum_probs=233.4
Q ss_pred CCcccccccEEEeEeeeeeeeeeeccccCcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc
Q 007848 318 NNHKILNSQLFVDKFSESVQYTFLDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY 397 (587)
Q Consensus 318 ~~~~~~~G~i~l~~~~~~~~~sFldyi~~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~y 397 (587)
++|++ +|+|.+.+|++ +|||||||+||||++|+||||||+|||+|+.|+||||+++. ++|+||+||++||+||++|
T Consensus 3 ~~~~~-~g~~~~~~~~~--~~tFldy~~~G~~~nl~vaIDfT~SNg~p~~~~SLHy~~~~-~~N~Yq~aI~~vg~il~~y 78 (254)
T cd01459 3 KVYKS-SGEVTLTDCRV--QPTFLDYRSAGLESNLIVAIDFTKSNGWPGEKRSLHYISPG-RLNPYQKAIRIVGEVLQPY 78 (254)
T ss_pred CCCCC-ceEEEEEEecc--CCCHHHHHhCCCeeeEEEEEEeCCCCCCCCCCCCcccCCCC-CccHHHHHHHHHHHHHHhc
Confidence 45666 99999999988 99999999999999999999999999999999999999987 7999999999999999999
Q ss_pred cCCCCcceeeecccC-CCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCC
Q 007848 398 DSDKRFPAWGFGARP-IDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHG 476 (587)
Q Consensus 398 d~d~~~~~~gFG~~~-~~~~~~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~ 476 (587)
|+|++||+|||||+. +.+.++|||| |++.+|+|.|++||++||++++++|+|+|||+|+|||++|+++|++.. ..
T Consensus 79 D~D~~ip~~GFGa~~~~~~~v~~~f~--~~~~~p~~~Gi~gvl~aY~~~l~~v~lsGpT~fapvI~~a~~~a~~~~--~~ 154 (254)
T cd01459 79 DSDKLIPAFGFGAIVTKDQSVFSFFP--GYSESPECQGFEGVLRAYREALPNVSLSGPTNFAPVIRAAANIAKASN--SQ 154 (254)
T ss_pred CCCCceeeEeecccCCCCCccccccC--CCCCCCcccCHHHHHHHHHHHhceeeecCcchHHHHHHHHHHHHHHhc--CC
Confidence 999999999999984 4566899999 899999999999999999999999999999999999999999999763 33
Q ss_pred CceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCCchhhhhcccCCCcccccCCCCccccceeeeeeCcccC
Q 007848 477 QKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQ 556 (587)
Q Consensus 477 ~~y~vlliltdG~i~d~~~t~~~i~~as~lPlSiiiVGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~ 556 (587)
.+|+||||||||+|+||++|+++|++||++||||||||||+++|+.|++||+|+ . |++++|+.+.|||||||+|+++.
T Consensus 155 ~~Y~VLLIiTDG~i~D~~~t~~aIv~AS~~PlSIiiVGVGd~~F~~M~~LD~d~-~-l~~~~~~~~~rDnvqFV~f~~~~ 232 (254)
T cd01459 155 SKYHILLIITDGEITDMNETIKAIVEASKYPLSIVIVGVGDGPFDAMERLDDDD-G-LESSDGRIATRDIVQFVPFTEFM 232 (254)
T ss_pred CceEEEEEECCCCcccHHHHHHHHHHHhcCCeEEEEEEeCCCChHHHHHhcCcc-c-cccccCCcceecceeeecchhhc
Confidence 479999999999999999999999999999999999999999999999999877 4 89999999999999999999999
Q ss_pred Cc----HHHHHHHHHHHHHHHH
Q 007848 557 NG----EISVVQALLAELPSQF 574 (587)
Q Consensus 557 ~~----~~~l~~~~L~eiP~q~ 574 (587)
.. +.+||+++|+|||+|+
T Consensus 233 ~~~~~~~~~La~~~L~EiP~Q~ 254 (254)
T cd01459 233 SNAGNPEAALATAALAEIPSQL 254 (254)
T ss_pred ccccccHHHHHHHHHHhccccC
Confidence 66 7899999999999995
No 3
>PF07002 Copine: Copine; InterPro: IPR010734 This represents a conserved region approximately 180 residues long within eukaryotic copines. Copines are Ca2+-dependent phospholipid-binding proteins that are thought to be involved in membrane-trafficking, and may also be involved in cell division and growth [].
Probab=100.00 E-value=1.9e-53 Score=389.22 Aligned_cols=145 Identities=59% Similarity=0.988 Sum_probs=140.3
Q ss_pred CccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeeccc-CCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcc
Q 007848 370 SLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGAR-PIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHN 448 (587)
Q Consensus 370 slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~-~~~~~~~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~ 448 (587)
||||++|. ++|+||+||++||++|++||+|++||+|||||+ ++++.+||||||||+++||+|.|++||+++|++++++
T Consensus 1 SLH~~~~~-~~N~Y~~ai~~vg~il~~Yd~dk~~p~~GFGa~~~~~~~vsh~F~ln~~~~~p~~~Gi~gvl~~Y~~~~~~ 79 (146)
T PF07002_consen 1 SLHYISPN-QPNPYQQAIRAVGEILQDYDSDKMIPAYGFGAKIPPDYSVSHCFPLNGNPQNPECQGIDGVLEAYRKALPK 79 (146)
T ss_pred CcccCCCC-CCCHHHHHHHHHHHHHHhhccCCccceeccCCcCCCCcccccceeeecCCCCCcccCHHHHHHHHHHHhhh
Confidence 89999998 799999999999999999999999999999999 5678899999999999999999999999999999999
Q ss_pred eeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecC
Q 007848 449 VNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVG 516 (587)
Q Consensus 449 v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlSiiiVGvG 516 (587)
|+|+|||+|+|||++|+++|++ ..+++++|+||||||||+|+||++|+++|++||++||||||||||
T Consensus 80 v~l~GPT~fapiI~~a~~~a~~-~~~~~~~Y~iLlIlTDG~i~D~~~T~~aIv~AS~~PlSIIiVGVG 146 (146)
T PF07002_consen 80 VQLSGPTNFAPIINHAAKIAKQ-SNQNGQQYFILLILTDGQITDMEETIDAIVEASKLPLSIIIVGVG 146 (146)
T ss_pred eEECCCccHHHHHHHHHHHHhh-hccCCceEEEEEEecccccccHHHHHHHHHHHccCCeEEEEEEeC
Confidence 9999999999999999999997 456789999999999999999999999999999999999999998
No 4
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.4e-28 Score=259.56 Aligned_cols=215 Identities=21% Similarity=0.319 Sum_probs=184.7
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCCCccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVD 130 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~~~~~~~ 130 (587)
++|++|+.+|..|.|||||++++.++.. .+.+|++.++|+||.|+|+|.|.+..++ .+.|.|.|||.|.+
T Consensus 174 ~qa~~Lp~~d~~g~sdpyVK~~llPdk~---~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~drf----- 245 (421)
T KOG1028|consen 174 IQAHDLPAKDRGGTSDPYVKVYLLPDKK---GKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFDRF----- 245 (421)
T ss_pred EEecCCCcccCCCCCCCeeEEEEcCCCC---CcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecCCc-----
Confidence 7899999999778899999999998442 5999999999999999999999866553 46999999999987
Q ss_pred cccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecceeccccccceeeecc
Q 007848 131 VKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRC 210 (587)
Q Consensus 131 ~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~~~l~v~vi~a 210 (587)
+++++||++.++|..+........|.+|.. .... .....|+|.+++.|++..+.+.+.+++|
T Consensus 246 ------sr~~~iGev~~~l~~~~~~~~~~~w~~l~~-----------~~~~-~~~~~gel~~sL~Y~p~~g~ltv~v~ka 307 (421)
T KOG1028|consen 246 ------SRHDFIGEVILPLGEVDLLSTTLFWKDLQP-----------SSTD-SEELAGELLLSLCYLPTAGRLTVVVIKA 307 (421)
T ss_pred ------ccccEEEEEEecCccccccccceeeecccc-----------ccCC-cccccceEEEEEEeecCCCeEEEEEEEe
Confidence 899999999999999887766778999865 1110 1122389999999999999999999999
Q ss_pred ccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ce--EEeeecCCCCCcEEEEEEeccCCCCCcee
Q 007848 211 SDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNGKHDLI 287 (587)
Q Consensus 211 ~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~--~~~~~l~~~~~~L~i~V~D~d~~~~dd~I 287 (587)
++|+.++..+.+||||++++... ++...+.||.+.++++||+||| |. ++.+.+. +..|.|+|||++..+++++|
T Consensus 308 r~L~~~~~~~~~d~~Vk~~l~~~-~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~--~~~l~l~V~d~d~~~~~~~i 384 (421)
T KOG1028|consen 308 RNLKSMDVGGLSDPYVKVTLLDG-DKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA--EVSLELTVWDHDTLGSNDLI 384 (421)
T ss_pred cCCCcccCCCCCCccEEEEEecC-CceeeeeeeecccCCCCCcccccEEEeCCHHHhh--eeEEEEEEEEccccccccee
Confidence 99999999999999999999885 4778899999999999999999 44 4444543 46899999999999999999
Q ss_pred EEEEEechh
Q 007848 288 GKVQKSLAD 296 (587)
Q Consensus 288 G~~~i~l~~ 296 (587)
|.+.+....
T Consensus 385 G~~~lG~~~ 393 (421)
T KOG1028|consen 385 GRCILGSDS 393 (421)
T ss_pred eEEEecCCC
Confidence 999988775
No 5
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=99.93 E-value=3.3e-25 Score=210.38 Aligned_cols=198 Identities=21% Similarity=0.301 Sum_probs=163.7
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 429 (587)
.++.+.||-|+| |.+.++....|++++++..+..++|+|..+++|.||.+.... .+
T Consensus 2 ArV~LVLD~SGS------------M~~~yk~G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~~~~~------------~~ 57 (200)
T PF10138_consen 2 ARVYLVLDISGS------------MRPLYKDGTVQRVVERILALAAQFDDDGEIDVWFFSTEFDRL------------PD 57 (200)
T ss_pred cEEEEEEeCCCC------------CchhhhCccHHHHHHHHHHHHhhcCCCCceEEEEeCCCCCcC------------CC
Confidence 578999999996 444446688999999999999999999999999999972111 12
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 007848 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (587)
Q Consensus 430 p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlS 509 (587)
-....+++.++.....+..+...|-|+++|||+++++...... ....+...|++|||.++|-.++.++|++||++||.
T Consensus 58 vt~~~~~~~v~~~~~~~~~~~~~G~t~y~~vm~~v~~~y~~~~--~~~~P~~VlFiTDG~~~~~~~~~~~i~~as~~pif 135 (200)
T PF10138_consen 58 VTLDNYEGYVDELHAGLPDWGRMGGTNYAPVMEDVLDHYFKRE--PSDAPALVLFITDGGPDDRRAIEKLIREASDEPIF 135 (200)
T ss_pred cCHHHHHHHHHHHhccccccCCCCCcchHHHHHHHHHHHhhcC--CCCCCeEEEEEecCCccchHHHHHHHHhccCCCee
Confidence 2444567777666555556676677999999999999887542 33458999999999999999999999999999999
Q ss_pred EEEEecCCCCchhhhhcccCCCcccccCCCCccccceeeeeeCcccCCc-HHHHHHHHHHHHHHHHHHHHHHCCCC
Q 007848 510 ILIIGVGGADFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQNG-EISVVQALLAELPSQFLTYMRTRDIQ 584 (587)
Q Consensus 510 iiiVGvG~~~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~~~-~~~l~~~~L~eiP~q~~~y~~~~~~~ 584 (587)
|.+||||+.+|+.+++||.-. +| .-||+.|+...+.... +++|++.+|+|+|.|+.+ .+.+||.
T Consensus 136 wqFVgiG~~~f~fL~kLD~l~-gR---------~vDNa~Ff~~~d~~~lsD~eLy~~LL~Efp~Wl~~-ar~~gi~ 200 (200)
T PF10138_consen 136 WQFVGIGDSNFGFLEKLDDLA-GR---------VVDNAGFFAIDDIDELSDEELYDRLLAEFPDWLKA-ARAKGIL 200 (200)
T ss_pred EEEEEecCCcchHHHHhhccC-Cc---------ccCCcCeEecCCcccCCHHHHHHHHHHHHHHHHHH-HHHcCCC
Confidence 999999999999999999544 33 3499999999999753 899999999999999777 7788774
No 6
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.84 E-value=1.9e-20 Score=200.68 Aligned_cols=311 Identities=16% Similarity=0.161 Sum_probs=213.7
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
+.+. .+|+||++.+..|.+||||.|.+..+ ++.||.++.++|.|.|.|.|.|.+. ...+.|.|-|||.| .
T Consensus 7 l~vki~E~knL~~~~~~g~~D~yC~v~lD~E-----~v~RT~tv~ksL~PF~gEe~~~~iP-~~F~~l~fYv~D~d-~-- 77 (800)
T KOG2059|consen 7 LKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE-----EVCRTATVEKSLCPFFGEEFYFEIP-RTFRYLSFYVWDRD-L-- 77 (800)
T ss_pred eeEEEeecccCCCCCCCCCcCcceEEeecch-----hhhhhhhhhhhcCCccccceEEecC-cceeeEEEEEeccc-c--
Confidence 4454 58999999999999999999999642 7999999999999999999987765 24468999999999 4
Q ss_pred ccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc--eeccccccce
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE--ECINSKTTTE 205 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~--~~~~~~~l~v 205 (587)
++|+.||.+.+.-.+|...++..-|+.|.. .+. ..+..|+|++.++ +......+..
T Consensus 78 ---------~~D~~IGKvai~re~l~~~~~~d~W~~L~~-----------VD~--dsEVQG~v~l~l~~~e~~~~~~~~c 135 (800)
T KOG2059|consen 78 ---------KRDDIIGKVAIKREDLHMYPGKDTWFSLQP-----------VDP--DSEVQGKVHLELALTEAIQSSGLVC 135 (800)
T ss_pred ---------ccccccceeeeeHHHHhhCCCCccceeccc-----------cCC--ChhhceeEEEEEEeccccCCCcchh
Confidence 799999999999999998888899999965 222 3367899888654 4445667888
Q ss_pred eeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-------------CCCCCcE
Q 007848 206 LILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-------------GSKDSPL 271 (587)
Q Consensus 206 ~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-------------~~~~~~L 271 (587)
.++.++++-+.+. +.+|||+++...+ +......+|.+++++.+|.|+| |.|.+..- ++.-..|
T Consensus 136 ~~L~~r~~~P~~~-~~~dp~~~v~~~g--~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~i 212 (800)
T KOG2059|consen 136 HVLKTRQGLPIIN-GQCDPFARVTLCG--PSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEI 212 (800)
T ss_pred hhhhhcccCceeC-CCCCcceEEeecc--cchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeE
Confidence 8899998877654 4599999998854 2233457999999999999999 55444210 1123468
Q ss_pred EEEEEe-ccCCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCC-cccccccEEEeEeeeeeeeee-eccccCcc
Q 007848 272 IIECFN-FNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNN-HKILNSQLFVDKFSESVQYTF-LDYLAGGF 348 (587)
Q Consensus 272 ~i~V~D-~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~-~~~~~G~i~l~~~~~~~~~sF-ldyi~~g~ 348 (587)
++++|+ ++...+++|+|++.+++..+.+..+...||.|.- +..+.++ .....|.++++-+ ....+.| ++|- +-+
T Consensus 213 rv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp-~~~g~~~~~~~~lGslrl~v~-y~~D~Vlps~~Y-~pL 289 (800)
T KOG2059|consen 213 RVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQP-RPNGEKSSDGGDLGSLRLNVT-YTEDHVLPSQYY-KPL 289 (800)
T ss_pred EEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEec-CCCcccCCCCCCccceeeeEE-eeeceeccHhhh-hhH
Confidence 899998 6666678999999999999986555556666643 3333221 1223788888544 4444444 2332 222
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCc
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRF 403 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~ 403 (587)
---+.-+.| +.|--.+-+|-+... ...=|.+.+.+-+++.++|.-+-|
T Consensus 290 ~~LLl~s~d-----~~p~taS~v~ileEl--~~~kqdva~~LVrLfl~~~r~~pf 337 (800)
T KOG2059|consen 290 MDLLLESVD-----VQPITASAVAILEEL--CREKQDVARPLVRLFLHSDRIVPF 337 (800)
T ss_pred HHHHHhccc-----ccccchhHHHHHHHH--hhhhhhHHHHHHHHHhcccchHHH
Confidence 222223333 111111123333322 234456666666666666654433
No 7
>cd01457 vWA_ORF176_type VWA ORF176 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most
Probab=99.78 E-value=1.4e-18 Score=169.27 Aligned_cols=175 Identities=22% Similarity=0.198 Sum_probs=131.0
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p 430 (587)
.++++||.|+|++.+..+.++| +.+.+++++.+++.++.+||.|+...++.||.... .++++
T Consensus 4 dvv~~ID~SgSM~~~~~~~~~~------k~~~ak~~~~~l~~~~~~~D~d~i~l~~f~~~~~~------~~~~~------ 65 (199)
T cd01457 4 DYTLLIDKSGSMAEADEAKERS------RWEEAQESTRALARKCEEYDSDGITVYLFSGDFRR------YDNVN------ 65 (199)
T ss_pred CEEEEEECCCcCCCCCCCCCch------HHHHHHHHHHHHHHHHHhcCCCCeEEEEecCCccc------cCCcC------
Confidence 5789999999998777555544 56999999999999999999999665665554310 12211
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHH-HHHhhh-ccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCC--
Q 007848 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAAL-IAGQSL-ANHGQKYFVLLIITDGVVTDLQETKDALVKASDL-- 506 (587)
Q Consensus 431 ~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~-~a~~~~-~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~l-- 506 (587)
.+++.++|. .+...|+|++.+.|+.+++ ++.... .+..+.|.+++|||||..+|.+++.++|++|++.
T Consensus 66 ----~~~v~~~~~----~~~p~G~T~l~~~l~~a~~~~~~~~~~~~~~p~~~~vIiiTDG~~~d~~~~~~~i~~a~~~l~ 137 (199)
T cd01457 66 ----SSKVDQLFA----ENSPDGGTNLAAVLQDALNNYFQRKENGATCPEGETFLVITDGAPDDKDAVERVIIKASDELD 137 (199)
T ss_pred ----HHHHHHHHh----cCCCCCcCcHHHHHHHHHHHHHHHHhhccCCCCceEEEEEcCCCCCcHHHHHHHHHHHHHhhc
Confidence 556666664 4556799999999999985 433221 1233459999999999999999999999999862
Q ss_pred ---CeEEEEEecCCC--CchhhhhcccCCCcccccCCCCccccceeeeeeCcccCCc
Q 007848 507 ---PLSILIIGVGGA--DFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQNG 558 (587)
Q Consensus 507 ---PlSiiiVGvG~~--~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~~~ 558 (587)
++.|.+||||++ +|..|+.|| |. | ++..+.||||+||+|+++..-
T Consensus 138 ~~~~i~i~~v~vG~~~~~~~~L~~ld-~~---~---~~~~~~~d~vd~~~~~~~~~~ 187 (199)
T cd01457 138 ADNELAISFLQIGRDPAATAFLKALD-DQ---L---QEVGAKFDIVDTVTWDDMERL 187 (199)
T ss_pred cccCceEEEEEeCCcHHHHHHHHHHh-HH---H---HhcCCcccceeeeeHHhhhcC
Confidence 677777777775 899999999 43 2 123357999999999998653
No 8
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.78 E-value=1.8e-18 Score=154.52 Aligned_cols=112 Identities=51% Similarity=0.827 Sum_probs=98.0
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEecCC-CceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 48 QIELSFSAADLRDRDVLSKSDPMLVVYMKARD-GALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 48 ~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~-~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
.+++.++|++|+++|..|++||||+|++.... +.|...+||+++++|+||.|+++|.|.+..+..+.|+|+|||+|...
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~ 81 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCc
Confidence 48899999999999999999999999998743 46778999999999999999999999887777889999999999610
Q ss_pred cccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
..++++++||++.+++.+|...++...+++|..
T Consensus 82 -------~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 82 -------KDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred -------CCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 012789999999999999998888889999844
No 9
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.77 E-value=1.3e-18 Score=156.70 Aligned_cols=122 Identities=16% Similarity=0.256 Sum_probs=100.5
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCC-CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~-g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l 264 (587)
+|+|.+++.+......+.|.+++|+||+.+|.. |.+||||++++.+. +....++||+++++++||+||| |.|++..-
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD-KSNRGKRKTSVKKKTLNPVFNETLRYKVERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC-CCccccccCccCcCCCCCccCceEEEECCHH
Confidence 589999999999889999999999999999976 89999999999764 3334578999999999999999 77765421
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
.-....|.|+|||++..+++++||++.++|.++........||.|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 112578999999999999999999999999999643333445554
No 10
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.77 E-value=3.6e-18 Score=150.15 Aligned_cols=107 Identities=41% Similarity=0.696 Sum_probs=92.8
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceeeceEEeeec--CCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQV--GSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wnef~~~~~~l--~~~~~~L~i~V~D~d~ 280 (587)
.++++++|++|+.+|.+|.+|||+++++..+++++...+||+++++++||+||+|.++...+ .+....|.|+|||++.
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn~f~~~~~~l~~~~~~~~l~~~V~d~d~ 81 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKPFTIPLQKLCNGDYDRPIKIEVYDYDS 81 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceEEEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence 56789999999999999999999999997755567778999999999999999988887766 3346899999999999
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
.++|++||++.+++.+|. ....+++++++
T Consensus 82 ~~~d~~iG~~~~~l~~l~--~~~~~~~~~~~ 110 (110)
T cd04047 82 SGKHDLIGEFETTLDELL--KSSPLEFELIN 110 (110)
T ss_pred CCCCcEEEEEEEEHHHHh--cCCCceEEecC
Confidence 999999999999999995 45566777754
No 11
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.75 E-value=5.8e-18 Score=152.42 Aligned_cols=122 Identities=15% Similarity=0.281 Sum_probs=99.6
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCC-CCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDL-FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~-~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l 264 (587)
.|+|.+++.+.+..+.+.|.+++|+||+.+|. .+.+||||++++... +.....+||+++++++||+||| |.|++..-
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-KSRQSKRKTSIKRNTTNPVYNETLKYSISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-CccccceEeeeeeCCCCCcccceEEEECCHH
Confidence 48999999999999999999999999998875 589999999999763 4345578999999999999999 66665321
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
.-.+..|.|+|||++..+++++||++.+++.++........|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 112568999999999999999999999999999753333445554
No 12
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.75 E-value=3.9e-18 Score=150.17 Aligned_cols=106 Identities=15% Similarity=0.179 Sum_probs=89.0
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|++++.|.+..+.+.|.+++|++|+ ..|.+||||++++..++ + ...+||++.++|+||+||| |.|.+..-.-
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~-k-~~k~kT~v~rktlnPvfnE~f~F~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSE-G-QKEAQTALKKLALHTQWEEELVFPLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCc-C-ccEEEcceecCCCCCccccEEEEeCCHHHh
Confidence 578899999999999999999999999 34679999999997632 2 3467999999999999999 5554432122
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechhhh
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~ 298 (587)
.+..|.|+|||+|++++|++||++.+++.++.
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~ 107 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVS 107 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEcccccc
Confidence 36889999999999999999999999999874
No 13
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.75 E-value=8e-18 Score=150.86 Aligned_cols=118 Identities=17% Similarity=0.246 Sum_probs=95.6
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-C
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-G 265 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-~ 265 (587)
|+|.+++.+. .+.+.|.+++|++|+.+| .+.+||||++++.++ ......+||+++++++||+||| |.|++... .
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~-~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPD-PQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeC-CccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 8899999887 677999999999999999 899999999999764 3334578999999999999998 77764111 1
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
.....|.|+|||++..+++++||++.++|.++........||.|
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 23578999999999999999999999999999743333345543
No 14
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.74 E-value=1.3e-17 Score=153.38 Aligned_cols=122 Identities=15% Similarity=0.203 Sum_probs=101.1
Q ss_pred CcccEEEeecceeccccccceeeeccccCCcCC-CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEee
Q 007848 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQ 262 (587)
Q Consensus 185 ~~~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d-~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~ 262 (587)
...|+|.+++.+ ..+.+.|.+++|+||+.++ ..|.+||||++++..+ ++....+||+++++++||+||| |.|++.
T Consensus 15 ~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~-~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 15 PSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEG-KKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECC-CccccceeceecCCCCCCccCCeEEEEEc
Confidence 457999999988 4678999999999999875 6789999999999873 4445688999999999999999 777776
Q ss_pred ecCCCCCcEEEEEE-eccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 263 QVGSKDSPLIIECF-NFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 263 ~l~~~~~~L~i~V~-D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
+ .+..|.|+|| |++..+++++||++.++|.++........||.|.++
T Consensus 92 -l--~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 92 -P--TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred -C--CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 3 3789999999 688888899999999999998543344467777653
No 15
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.74 E-value=2.3e-17 Score=148.69 Aligned_cols=113 Identities=17% Similarity=0.231 Sum_probs=92.8
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec-----CceeEEEEEEEEcCCCcc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-----EVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~-----e~~q~L~~~V~D~D~~~~ 127 (587)
++|+||+.+|..|++||||+|++.. ...||+++++++||.|+|.|.|.+.. ...+.|.|.|||+|..
T Consensus 6 ~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~-- 77 (126)
T cd08682 6 LQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLL-- 77 (126)
T ss_pred EECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcccc--
Confidence 6899999999999999999999954 57899999999999999999998765 2456899999999965
Q ss_pred ccccccccccccccccceeeecchhh--ccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeec
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIV--TRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~--~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
+++++||++.++|+++. .......|++|.++ ..+ ..+.+|+|++++
T Consensus 78 ---------~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~----------~~~--~~~~~Gei~l~~ 125 (126)
T cd08682 78 ---------GLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESK----------PGK--DDKERGEIEVDI 125 (126)
T ss_pred ---------CCCceeEEEEEEHHHhhccCCCcccEEEECcCC----------CCC--CccccceEEEEe
Confidence 78999999999999997 33445689999651 111 224679998865
No 16
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.72 E-value=7.2e-17 Score=144.01 Aligned_cols=116 Identities=15% Similarity=0.193 Sum_probs=93.4
Q ss_pred EEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecC-CCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 48 ~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~-tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
.++++ ++|++|++.+ +|+|||||+|.++. .+.||+++.+ ++||+|||+|.|.+..+ ...|.|+|||.|..
T Consensus 3 ~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~~-~~~l~~~V~d~d~~ 74 (121)
T cd04016 3 RLSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPEG-VDSIYIEIFDERAF 74 (121)
T ss_pred EEEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecCC-CcEEEEEEEeCCCC
Confidence 46676 6899998888 89999999999954 4779999876 79999999999987643 36899999999976
Q ss_pred ccccccccccccccccccceeeecc-hhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecce
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLS-QIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 196 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~-~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~ 196 (587)
+++++||++.++|. .+........|++|.+ +.+ .+..|.|+|++.+
T Consensus 75 -----------~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~-----------~~~---~~~~g~i~l~l~y 121 (121)
T cd04016 75 -----------TMDERIAWTHITIPESVFNGETLDDWYSLSG-----------KQG---EDKEGMINLVFSY 121 (121)
T ss_pred -----------cCCceEEEEEEECchhccCCCCccccEeCcC-----------ccC---CCCceEEEEEEeC
Confidence 78999999999996 4665555678999965 221 1456999988753
No 17
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.72 E-value=3.9e-17 Score=146.69 Aligned_cols=120 Identities=22% Similarity=0.368 Sum_probs=99.2
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
+|+|.+++++....+.+.+.+++|++|+.+|..+.+||||++++.++.+ .++||+++++++||+||| |.|.+..-.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~ 78 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSE 78 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHH
Confidence 6999999999988999999999999999999999999999999976322 378999999999999998 777654211
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
-....|.|+|||++..+++++||++.+++.++........|++|
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 79 LGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 12468999999999999999999999999998643333445443
No 18
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.71 E-value=6.6e-17 Score=145.06 Aligned_cols=119 Identities=24% Similarity=0.327 Sum_probs=95.3
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
|.+.+++|++|+.+|..+.+||||++++.+ ..++|+++++++||.||+ |.|.+.. .....|.|+|||++..
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~~~v~d~~~~ 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKKSCYPRWNEVFEFELME--GADSPLSVEVWDWDLV 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecCCCCCccCcEEEEEcCC--CCCCEEEEEEEECCCC
Confidence 678899999999999999999999999832 258999999999999998 7777653 2257899999999999
Q ss_pred CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
+++++||.+.+++.++........|+.|....++.+++.++ .|.|+|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~-~G~l~~~ 121 (123)
T cd04025 74 SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGN-LGSLRLK 121 (123)
T ss_pred CCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCc-eEEEEEE
Confidence 99999999999999997544445677776544333234455 9999884
No 19
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.71 E-value=4.9e-17 Score=146.92 Aligned_cols=111 Identities=16% Similarity=0.249 Sum_probs=95.1
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCC-CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~-g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l 264 (587)
.|+|.+++.+....+.+.|.+++|+||+.+|.. |.+||||++++.+..+ ....+||+++++++||+||| |.|++..-
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~-~~~k~kT~v~~~t~nPvfNE~F~f~v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKS-HNSKRKTAVKKGTVNPVFNETLKYVVEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCc-ccceeecccccCCCCCccceEEEEEcCHH
Confidence 389999999999999999999999999999975 9999999999987432 33478999999999999999 77765321
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhh
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~ 298 (587)
...+..|.|.|||++..+++++||++.++|.++.
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~ 113 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWD 113 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcc
Confidence 1225799999999999899999999999999995
No 20
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.71 E-value=1.3e-16 Score=142.80 Aligned_cols=117 Identities=23% Similarity=0.389 Sum_probs=97.7
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
+.++ ++|++|+.+|..|++||||++++.+ + ...||+++++++||.|+|.|.|.+.. ..+.|+|+|||+|..
T Consensus 2 L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~---~--~~~kT~~~~~t~nP~Wne~f~f~v~~-~~~~l~~~v~D~d~~-- 73 (121)
T cd04042 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYGG---K--TVYKSKTIYKNLNPVWDEKFTLPIED-VTQPLYIKVFDYDRG-- 73 (121)
T ss_pred eEEEEEEeeCCCCcCCCCCCCCeEEEEECC---E--EEEEeeeccCCCCCccceeEEEEecC-CCCeEEEEEEeCCCC--
Confidence 4454 6899999999999999999999853 2 58999999999999999999988653 357899999999975
Q ss_pred ccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecce
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 196 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~ 196 (587)
+++++||++.++|.++........|++|.+ +. ..+..|+|.+.++.
T Consensus 74 ---------~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~-----------~~---~~~~~G~l~l~~~~ 119 (121)
T cd04042 74 ---------LTDDFMGSAFVDLSTLELNKPTEVKLKLED-----------PN---SDEDLGYISLVVTL 119 (121)
T ss_pred ---------CCCcceEEEEEEHHHcCCCCCeEEEEECCC-----------CC---CccCceEEEEEEEE
Confidence 789999999999999997777788999975 21 12568999988754
No 21
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.71 E-value=3.4e-17 Score=146.85 Aligned_cols=111 Identities=14% Similarity=0.220 Sum_probs=95.4
Q ss_pred EEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCC
Q 007848 189 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSK 267 (587)
Q Consensus 189 ~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~ 267 (587)
+|.+++.|.+..+.+.|.+++|+||+.++..+.+||||++++.++.++....+||+++++++||+||| |.|++..-.-.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 58889999999999999999999999999888999999999988544323578999999999999999 77765322223
Q ss_pred CCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 268 DSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 268 ~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
+..|.|+|||++..+++++||++.++|.++..
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~ 113 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFES 113 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccC
Confidence 68999999999999999999999999999953
No 22
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.71 E-value=6.2e-17 Score=145.89 Aligned_cols=122 Identities=19% Similarity=0.228 Sum_probs=100.5
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
.|+|.+++.+....+.+.+.+++|+||+.++.++.+||||++++... +.+..++||+++++++||+||| |.|.+..-.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD-KSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC-CCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 58999999999999999999999999999999999999999999763 4345689999999999999998 666653211
Q ss_pred CCCCcEEEEEEeccCC--CCCceeEEEEEechhhhhccCCCceeEe
Q 007848 266 SKDSPLIIECFNFNSN--GKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~--~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
.....|.|+|||++.. +++++||++.+++.+|........||.|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 1247899999999875 6889999999999999643333445554
No 23
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.71 E-value=6.1e-17 Score=144.07 Aligned_cols=113 Identities=16% Similarity=0.279 Sum_probs=94.8
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeec-CCCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVL-NSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~-~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
+++. ++|+||+++|..+++||||+|++.+ ...||+++. +++||.|+|.|.|.+..+..+.|.|+|||++..
T Consensus 3 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~- 75 (118)
T cd08681 3 LVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKR- 75 (118)
T ss_pred EEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCC-
Confidence 5555 6899999999999999999999864 478999875 579999999999998876678999999999864
Q ss_pred cccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
+ +++||++.+++.++........|++|.. ..+..|+|++++.
T Consensus 76 ----------~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~----------------~~~~~G~i~l~l~ 117 (118)
T cd08681 76 ----------K-PDLIGDTEVDLSPALKEGEFDDWYELTL----------------KGRYAGEVYLELT 117 (118)
T ss_pred ----------C-CcceEEEEEecHHHhhcCCCCCcEEecc----------------CCcEeeEEEEEEE
Confidence 4 8999999999999977666678999864 2256799988764
No 24
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.70 E-value=1.5e-16 Score=141.85 Aligned_cols=99 Identities=23% Similarity=0.359 Sum_probs=86.6
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|++.|..+++||||+|++.+..+ ...||+++++++||.|+|+|.|.+..+..+.|+|+|||+|..
T Consensus 7 i~a~~L~~~~~~~~~Dpyv~v~~~~~~~---~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~------- 76 (119)
T cd04036 7 LRATNITKGDLLSTPDCYVELWLPTASD---EKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV------- 76 (119)
T ss_pred EEeeCCCccCCCCCCCcEEEEEEcCCCC---ccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-------
Confidence 7899999999999999999999864222 588999999999999999999988776667899999999852
Q ss_pred cccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
++++||++.++|+++........|++|.+
T Consensus 77 -----~~~~iG~~~~~l~~l~~g~~~~~~~~L~~ 105 (119)
T cd04036 77 -----MDDHLGTVLFDVSKLKLGEKVRVTFSLNP 105 (119)
T ss_pred -----CCcccEEEEEEHHHCCCCCcEEEEEECCC
Confidence 68999999999999988777788999964
No 25
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=2.2e-17 Score=150.54 Aligned_cols=121 Identities=17% Similarity=0.256 Sum_probs=99.7
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|.+++.|.+....+.|.+++|+||+..|..|.+||||++++.+ +++.....||+++++++||+||| |.|.+..-.-
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~-~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQ-DGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEe-CCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 899999999999999999999999999999999999999999977 45555678999999999999999 7666543222
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
.+..|.|+|||++..+++++||++.+..... ..+...|.+++.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~--g~~~~hW~~ml~ 123 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAAS--GMGLSHWNQMLA 123 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCC--ChhHHHHHHHHH
Confidence 3678999999999999999999999987653 233334444544
No 26
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.70 E-value=9.9e-17 Score=144.11 Aligned_cols=120 Identities=13% Similarity=0.246 Sum_probs=98.2
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
+|+|.+++.+.+..+.+.+.+++|++|+.+|..|.+||||++++... + ..++||+++++++||+|+| |.|.+..-.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~-~--~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 78 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD-R--SNTKQSKIHKKTLNPEFDESFVFEVPPQE 78 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC-C--CCcEeCceEcCCCCCCcccEEEEeCCHHH
Confidence 69999999999888999999999999999999999999999999643 2 2368999999999999998 666653211
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
..+..|.|+|||++..+++++||++.+++.++........|+.|
T Consensus 79 l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 79 LPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 12568999999999999999999999999999643333334443
No 27
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.70 E-value=9.3e-17 Score=144.28 Aligned_cols=121 Identities=18% Similarity=0.295 Sum_probs=98.9
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l- 264 (587)
.|+|.+++.+.+..+.+.+.+++|++|+.++..+.+||||++++.+. +....++||+++++++||+||+ |.|.....
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 80 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD-RSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRE 80 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC-CCccccccccccCCCCCCccccEEEEcccCHH
Confidence 58999999998888999999999999999999999999999999663 3334588999999999999998 76664221
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
......|.|+|||++..+++++||++.++|.+.. ..+...||+|
T Consensus 81 ~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L 124 (125)
T cd04031 81 TLKERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEEC
Confidence 1135789999999999999999999999999942 3334456554
No 28
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.70 E-value=9.4e-17 Score=144.38 Aligned_cols=120 Identities=19% Similarity=0.327 Sum_probs=97.8
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l- 264 (587)
+|+|++++.+......+.+.+++|++|+.+|..+.+||||++++...++ ..+||+++++++||.||| |.|.....
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~ 78 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYE 78 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHH
Confidence 6999999999999999999999999999999999999999999865322 368999999999999998 66653221
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
......|.|+|||++..+++++||++.+++.++........|+.|
T Consensus 79 ~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l 123 (125)
T cd08386 79 KLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDL 123 (125)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEec
Confidence 112567999999999999999999999999999643333334443
No 29
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.69 E-value=1.7e-16 Score=141.31 Aligned_cols=106 Identities=16% Similarity=0.116 Sum_probs=86.9
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEec-CCCceeeEeeeeeecCCCCCceeeeEEEEeecC---ceeEEEEEEEEcC
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVD 123 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~-~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e---~~q~L~~~V~D~D 123 (587)
+.+. ++|+||+.+|. |++||||+|++.+ ..+....+.||+++.+|+||+|||+|.|.+..+ ....|+|.|||+|
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 3444 78999999984 9999999999853 111222468999999999999999999997643 3357999999998
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.. +++++||++.++|.++...+....|++|..
T Consensus 81 ~~-----------~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 81 FA-----------RDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred cc-----------CCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 64 678999999999999998887889999965
No 30
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.69 E-value=2.6e-16 Score=139.59 Aligned_cols=97 Identities=25% Similarity=0.384 Sum_probs=87.3
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|+||+.+|..+.+||||++++.+ ...||+++++|+||.|+|.|.|.+..+..+.|.|+|||.|..
T Consensus 7 ~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~------- 73 (116)
T cd08376 7 VEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTG------- 73 (116)
T ss_pred EEEECCCCCCCCCCCCcEEEEEECC------EeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCC-------
Confidence 7899999999999999999999853 578999999999999999999988766578999999999975
Q ss_pred cccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+++++||++.++|+++........|++|.+
T Consensus 74 ----~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~ 103 (116)
T cd08376 74 ----KKDEFIGRCEIDLSALPREQTHSLELELED 103 (116)
T ss_pred ----CCCCeEEEEEEeHHHCCCCCceEEEEEccC
Confidence 689999999999999988777889999954
No 31
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.69 E-value=2.1e-16 Score=141.76 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=96.9
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
+.++ ++|++|+++|..+.+||||+|++.. ...+|+++++++||.|+|+|.|.+.....+.|.|+|||+|..
T Consensus 2 L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~-- 73 (123)
T cd04025 2 LRCHVLEARDLAPKDRNGTSDPFVRVFYNG------QTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLV-- 73 (123)
T ss_pred EEEEEEEeeCCCCCCCCCCcCceEEEEECC------EEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCC--
Confidence 3444 7899999999999999999999853 478999999999999999999998766667899999999865
Q ss_pred ccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeec
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
+++++||++.++|.++........|++|.+. ... +.. +.+..|.|++.+
T Consensus 74 ---------~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~-----~~~--~~~--~~~~~G~l~~~~ 122 (123)
T cd04025 74 ---------SKNDFLGKVVFSIQTLQQAKQEEGWFRLLPD-----PRA--EEE--SGGNLGSLRLKV 122 (123)
T ss_pred ---------CCCcEeEEEEEEHHHcccCCCCCCEEECCCC-----CCC--Ccc--ccCceEEEEEEe
Confidence 7899999999999999876667789999651 000 111 236689888753
No 32
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.69 E-value=1.6e-16 Score=143.48 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=94.0
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc---eeEEEEEEEEcCC
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV---VQTLVFRIYDVDT 124 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~---~q~L~~~V~D~D~ 124 (587)
+.+. ++|++|+++|..+.+||||+|++.+ ...||+++++++||.|+|.|.|.+.... ...|+|.|||.+.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 4454 6899999999999999999999864 4789999999999999999999876432 3589999999886
Q ss_pred Ccccccccccccc-ccccccceeeecchhh-ccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 125 QFHNVDVKTLKLV-EQQFLGEATCTLSQIV-TRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 125 ~~~~~~~~~~~l~-~~d~LG~~~i~L~~l~-~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
. + +++|||++.++++++. .......|++|.. +.. ..+.+|+|.|++.
T Consensus 76 ~-----------~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~-----------~~~--~~~~~G~l~l~~~ 124 (127)
T cd04022 76 S-----------GRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK-----------RGL--FSRVRGEIGLKVY 124 (127)
T ss_pred C-----------cCCCCeeeEEEEcHHHcCCCCCccceEeEeee-----------CCC--CCCccEEEEEEEE
Confidence 4 4 7899999999999997 3444568999965 211 2246899988753
No 33
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.69 E-value=1.3e-16 Score=145.36 Aligned_cols=113 Identities=22% Similarity=0.277 Sum_probs=97.4
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCC-ceeeEEecceecCCCCCceee-ceEEeeec
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESG-THIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g-~~~~~~kT~vik~tlnP~Wne-f~~~~~~l 264 (587)
.|+|.+++++....+.+.+.+++|++|+.++.++.+||||++++..... .....+||+++++|+||+||| |.|++...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6999999999988899999999999999999999999999999975321 124579999999999999998 87776542
Q ss_pred --CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 265 --GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 265 --~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
......|.|+|||++..+++++||++.++|.+|..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 22467899999999999999999999999999964
No 34
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.69 E-value=2.3e-16 Score=140.78 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=89.0
Q ss_pred cccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecC-CCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~-tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
+.+.+.+++|++|+..+ +|++||||++.+.. .++||+++++ ++||+||| |.|++.. ....|.|+|||+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~------~~~kT~v~~~~~~nP~WNe~F~f~v~~---~~~~l~~~V~d~ 71 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGH------AVYETPTAYNGAKNPRWNKTIQCTLPE---GVDSIYIEIFDE 71 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEECC------EEEEeEEccCCCCCCccCeEEEEEecC---CCcEEEEEEEeC
Confidence 35778899999999888 89999999999943 2569999876 79999998 8887752 246799999999
Q ss_pred cCCCCCceeEEEEEech-hhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 279 NSNGKHDLIGKVQKSLA-DLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~-~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
|.+++|++||++.+++. .+........|++|...+ ++ .+ .|.|+|.
T Consensus 72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~--~~---~~-~g~i~l~ 118 (121)
T cd04016 72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQ--GE---DK-EGMINLV 118 (121)
T ss_pred CCCcCCceEEEEEEECchhccCCCCccccEeCcCcc--CC---CC-ceEEEEE
Confidence 99999999999999996 565433345677774321 21 22 8999994
No 35
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.68 E-value=2.4e-16 Score=140.96 Aligned_cols=115 Identities=18% Similarity=0.274 Sum_probs=92.2
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
++.+.+++|++|+.+|.+|.+||||++++. + ..++||+++++++||.||| |.|.+.. ....|.|+|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~---~--~~~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG---G--KTVYKSKTIYKNLNPVWDEKFTLPIED---VTQPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC---C--EEEEEeeeccCCCCCccceeEEEEecC---CCCeEEEEEEeCCC
Confidence 467889999999999999999999999983 2 3478999999999999998 7777653 35789999999999
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+++++||.+.+++.++........+++|.+++. .+. .|+|.|.
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~-----~~~-~G~l~l~ 116 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNS-----DED-LGYISLV 116 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCC-----ccC-ceEEEEE
Confidence 9999999999999999974333334555554321 123 8999983
No 36
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.68 E-value=2.7e-16 Score=141.80 Aligned_cols=117 Identities=22% Similarity=0.331 Sum_probs=90.7
Q ss_pred ceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec---CCCCCcEEEEEEecc
Q 007848 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV---GSKDSPLIIECFNFN 279 (587)
Q Consensus 204 ~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l---~~~~~~L~i~V~D~d 279 (587)
.|.+++|+||+.+|..|.+||||++++.. ..+||+++++++||+||| |.|.+... ......|.|+|||++
T Consensus 2 ~V~V~~A~~L~~~d~~g~~dpYv~v~l~~------~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~ 75 (126)
T cd08682 2 QVTVLQARGLLCKGKSGTNDAYVIIQLGK------EKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRN 75 (126)
T ss_pred EEEEEECcCCcCCCCCcCCCceEEEEECC------eeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEcc
Confidence 57899999999999999999999999843 268999999999999998 77766532 123678999999999
Q ss_pred CCCCCceeEEEEEechhhhh--ccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 280 SNGKHDLIGKVQKSLADLEK--LHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~--~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
..+++++||++.+++.++.. ......|++|.... ++ ..+. .|+|+|.
T Consensus 76 ~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~--~~-~~~~-~Gei~l~ 124 (126)
T cd08682 76 LLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKP--GK-DDKE-RGEIEVD 124 (126)
T ss_pred ccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCC--CC-Cccc-cceEEEE
Confidence 99999999999999999962 22234567765422 11 1122 8999983
No 37
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.68 E-value=1.8e-16 Score=141.95 Aligned_cols=120 Identities=17% Similarity=0.284 Sum_probs=97.1
Q ss_pred cEEEeecceeccccccceeeeccccCCcCC-CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d-~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
|+|.+++.+....+.+.+.+++|+||+.++ ..+.+||||++++.+. +.....+||+++++++||+||| |.|.+..-.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD-KSKQSKRKTSVKKNTTNPVFNETLKYHISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC-CCcCceeeccccCCCCCCcccceEEEeCCHHH
Confidence 789999999888899999999999999999 7889999999998753 3334578999999999999998 666553211
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeE
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQN 308 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~ 308 (587)
-....|.|+|||++..+++++||++.+++.++........||.
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 122 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP 122 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence 1256899999999999999999999999999953222334544
No 38
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.68 E-value=1.5e-16 Score=145.46 Aligned_cols=122 Identities=16% Similarity=0.178 Sum_probs=99.9
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
+|+|.+++++....+.+.+.+++|+||+.+|.+|.+||||++++.. +++....+||+++++++||.|+| |.|.+..-.
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~-~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYY-GKKRISKKKTHVKKCTLNPVFNESFVFDIPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEc-CCceeeeEcCccccCCCCCccCceEEEECCHHH
Confidence 5899999999888899999999999999999999999999999965 35555688999999999999998 666653211
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
.....|.|+|||++..+++++||++.+++... ..+...|+++..
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~--~~~~~~w~~l~~ 123 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKAS--GSGGHHWKEVCN 123 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcCC--CchHHHHHHHHh
Confidence 23567999999999999999999999999983 333344555543
No 39
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.68 E-value=1e-16 Score=141.19 Aligned_cols=102 Identities=15% Similarity=0.211 Sum_probs=83.6
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~D 123 (587)
.++.++ ++|+||+ . .|.|||||+|++.+++++ .+.||+++++|+||+|||+|.|++..++. ..|.|.|||+|
T Consensus 14 ~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~--~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D 88 (118)
T cd08677 14 AELHVNILEAENIS-V--DAGCECYISGCVSVSEGQ--KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD 88 (118)
T ss_pred CEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCc--cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence 445565 7899999 3 467999999999863332 47799999999999999999999877654 47999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
.. +++++||++.+++.++....+...|.+|
T Consensus 89 rf-----------s~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 89 RF-----------SRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CC-----------CCCceEEEEEEccccccCCccccchhcC
Confidence 87 8999999999999988666666677654
No 40
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.68 E-value=3.5e-16 Score=137.46 Aligned_cols=96 Identities=34% Similarity=0.576 Sum_probs=82.9
Q ss_pred EEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEee----cCceeEEEEEEEEcC
Q 007848 48 QIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ----FEVVQTLVFRIYDVD 123 (587)
Q Consensus 48 ~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~----~e~~q~L~~~V~D~D 123 (587)
.|+|.++|++|+++|..|++||||+|++.+.++++...+||+++++++||.|+ .|.|.+. .+..+.|+|+|||+|
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d 80 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYD 80 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeC
Confidence 58999999999999999999999999987644466788999999999999999 6777642 233579999999999
Q ss_pred CCccccccccccccccccccceeeecchhhcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~ 155 (587)
.. +++++||++.+++.+|...
T Consensus 81 ~~-----------~~d~~iG~~~~~l~~l~~~ 101 (110)
T cd04047 81 SS-----------GKHDLIGEFETTLDELLKS 101 (110)
T ss_pred CC-----------CCCcEEEEEEEEHHHHhcC
Confidence 75 7899999999999999843
No 41
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.68 E-value=1.6e-16 Score=143.13 Aligned_cols=106 Identities=20% Similarity=0.268 Sum_probs=89.1
Q ss_pred cEEEEE-EEEeCCCCCCCC-CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~-gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~ 122 (587)
.++.++ ++|+||+++|.. |.+||||+|++.+.. ....+.||+++++|+||.|+|+|.|.+..+. ...|.|.|||+
T Consensus 15 ~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~-~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~ 93 (125)
T cd08393 15 RELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDK-SNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHR 93 (125)
T ss_pred CEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCC-CccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeC
Confidence 457776 689999999986 899999999998632 2235789999999999999999999876443 24899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
|.. +++++||++.++|+++..+.....|++|
T Consensus 94 ~~~-----------~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 94 DSL-----------GRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred CCC-----------CCCcEeEEEEEecCccccCCCCcceEEC
Confidence 975 7899999999999999777667789987
No 42
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.67 E-value=1.3e-16 Score=145.64 Aligned_cols=108 Identities=14% Similarity=0.250 Sum_probs=92.5
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCC--CCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDL--FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV 264 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~--~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l 264 (587)
|+|.+++.|.+..+.+.|.+++|+||+.+|. .+.+||||++++..+ +++..+.||+++++++||+||| |.|.+..-
T Consensus 2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-NAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-CcccceeccceeeCCCCCccccEEEEECCHH
Confidence 8999999999999999999999999999983 355999999999874 5566788999999999999999 66555321
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechh
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~ 296 (587)
.-.+..|.|+|||+|..+++++||++.+++..
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 11267899999999999999999999999975
No 43
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=2e-16 Score=148.72 Aligned_cols=112 Identities=15% Similarity=0.210 Sum_probs=91.9
Q ss_pred ccEEEeecceec------------cccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCce
Q 007848 187 CGKLTVHAEECI------------NSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW 254 (587)
Q Consensus 187 ~G~I~l~~~~~~------------~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~W 254 (587)
+|+|.+++.+.+ ..+.+.|.+++|+||+.+|..+.+||||++++... +....++||+++++++||.|
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-~~~~~~~kT~vi~~t~nP~W 79 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-KSKKSKQKTPVVKKSVNPVW 79 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-CCCCcceeCCccCCCCCCCC
Confidence 477777777766 44689999999999999999999999999998653 33455899999999999999
Q ss_pred ee-ceEEeeec-CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 255 KS-VFLNIQQV-GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 255 ne-f~~~~~~l-~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
|+ |.|..... ...+..|.|+|||++..+++++||++.+++.++..
T Consensus 80 nE~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~ 126 (162)
T cd04020 80 NHTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKS 126 (162)
T ss_pred CCEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCcccc
Confidence 98 66653211 11246899999999999999999999999999863
No 44
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.67 E-value=2.5e-16 Score=140.46 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=91.8
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|.+++++ ..+.+.+.+++|+||+.++ .|.+||||++++.+. .....++||+++++++||+||| |.|.+.. .+
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~-~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~-~~ 75 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPD-KEVRFRQKTSTVPDSANPLFHETFSFDVNE-RD 75 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeC-CCCcceEeCccccCCCCCccccEEEEEcCh-HH
Confidence 678888776 5678999999999999999 889999999999873 3334578999999999999999 7776532 12
Q ss_pred CCCcEEEEEEeccCCC-CCceeEEEEEechhhhhccCCCceeE
Q 007848 267 KDSPLIIECFNFNSNG-KHDLIGKVQKSLADLEKLHSSGQGQN 308 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~-~dd~IG~~~i~l~~l~~~~~~~~~~~ 308 (587)
....|.|+|||++... ++++||++.+++.++........||.
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~ 118 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYY 118 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEe
Confidence 2457899999999875 46899999999999963222234554
No 45
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.67 E-value=5.7e-16 Score=139.16 Aligned_cols=106 Identities=19% Similarity=0.252 Sum_probs=86.1
Q ss_pred EEEE-EEEeC---CCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCC
Q 007848 49 IELS-FSAAD---LRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDT 124 (587)
Q Consensus 49 ieL~-v~arn---L~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~ 124 (587)
+++. ++|++ |+++|..|++||||+|.+.+ +..||+++++++||+|+|+|.|.+... ...|.|+|||.|.
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~~~-~~~l~v~V~d~d~ 74 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVYDP-CTVLTVGVFDNSQ 74 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccCCCCCcceeEEEEEecCC-CCEEEEEEEECCC
Confidence 3454 68999 89999999999999999854 578999999999999999999987543 3489999999886
Q ss_pred CccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.+.. ....++++||++.++|+++........|++|..
T Consensus 75 ~~~~-----~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~ 111 (126)
T cd08379 75 SHWK-----EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLS 111 (126)
T ss_pred cccc-----ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEe
Confidence 4000 012379999999999999987766678999975
No 46
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.67 E-value=2.9e-16 Score=140.79 Aligned_cols=105 Identities=22% Similarity=0.271 Sum_probs=87.6
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEe-ecC--ceeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITY-QFE--VVQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~-~~e--~~q~L~~~V~D~ 122 (587)
..+.+. ++|+||+++| .+.+||||+|++.+.. ......||+++++++||.|+|+|.|.. ..+ ....|+|+|||+
T Consensus 13 ~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~-~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~ 90 (122)
T cd08381 13 GTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDP-QKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSH 90 (122)
T ss_pred CEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCC-ccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeC
Confidence 456666 7999999999 8999999999998632 223588999999999999999999886 322 235899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
|.. +++++||++.++|+++...+....|++|
T Consensus 91 d~~-----------~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 91 DSL-----------VENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCC-----------cCCcEEEEEEEeccccccCCCccceEEC
Confidence 976 7899999999999999877666789887
No 47
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.67 E-value=5.6e-16 Score=142.51 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=88.9
Q ss_pred cEEEEE-EEEeCCCCCC-CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEE-EcC
Q 007848 47 SQIELS-FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIY-DVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D-~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~-D~D 123 (587)
.++++. ++|+||+++| ..|.+||||++++.+. ++...+.||+++++|+||+|||+|.|.+. .....|.|.|| |++
T Consensus 29 ~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~-~~~~~k~KT~v~kktlnPvfNE~F~f~v~-l~~~~L~v~V~~d~~ 106 (146)
T cd04028 29 GQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEG-KKCIAKKKTKIARKTLDPLYQQQLVFDVS-PTGKTLQVIVWGDYG 106 (146)
T ss_pred CEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECC-CccccceeceecCCCCCCccCCeEEEEEc-CCCCEEEEEEEeCCC
Confidence 456665 6899999875 6789999999999873 33345889999999999999999999887 45669999999 566
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.. +++++||++.++|+++........|++|.+
T Consensus 107 ~~-----------~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~ 138 (146)
T cd04028 107 RM-----------DKKVFMGVAQILLDDLDLSNLVIGWYKLFP 138 (146)
T ss_pred CC-----------CCCceEEEEEEEcccccCCCCceeEEecCC
Confidence 54 689999999999999866666678999976
No 48
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=9.7e-16 Score=139.30 Aligned_cols=122 Identities=18% Similarity=0.358 Sum_probs=96.6
Q ss_pred EEE-EEEeCCCCCCCCCCCCcEEEEEEecC-CCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKAR-DGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 50 eL~-v~arnL~~~D~~gksDPyv~v~~~~~-~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
.+. ++|+||+++|..|++||||+|++.+. .+......||+++++|+||.|++.|.|.+... .+.|.|+|||.|..
T Consensus 3 ~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~l~~~v~d~~~~-- 79 (133)
T cd04033 3 RVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR-EHRLLFEVFDENRL-- 79 (133)
T ss_pred EEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC-CCEEEEEEEECCCC--
Confidence 444 78999999999999999999999763 23333467999999999999999999987643 46899999999975
Q ss_pred ccccccccccccccccceeeecchhhccCC------eeEEEEccccccccccccccCCCCCCCCcccEEEeecce
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKN------RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEE 196 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~------~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~ 196 (587)
+++++||++.+++.++..... ...|++|.+ ..+ ..+..|+|.++..+
T Consensus 80 ---------~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~-----------~~~--~~~~~G~l~~~~~~ 132 (133)
T cd04033 80 ---------TRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRP-----------RSS--KSRVKGHLRLYMAY 132 (133)
T ss_pred ---------CCCCeeEEEEEEHHHCCCcCccccccccchheeeee-----------cCC--CCcceeEEEEEEee
Confidence 789999999999999876432 346888865 221 23568999988754
No 49
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.66 E-value=8.2e-16 Score=140.44 Aligned_cols=91 Identities=24% Similarity=0.373 Sum_probs=80.5
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
-.+.++ ++|++|+++|..|++||||++++.. ...||+++++|+||.|++.|.|.+.....+.|.|+|||.|..
T Consensus 15 G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~D~d~~ 88 (136)
T cd08375 15 GRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVFDRDFF 88 (136)
T ss_pred EEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCCCCCCccCceEEEEecCccCCEEEEEEEECCCC
Confidence 346665 6899999999999999999999853 589999999999999999999988765567999999999965
Q ss_pred ccccccccccccccccccceeeecchhhc
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVT 154 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~~l~~ 154 (587)
+++++||++.++|.++..
T Consensus 89 -----------~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 89 -----------SPDDFLGRTEIRVADILK 106 (136)
T ss_pred -----------CCCCeeEEEEEEHHHhcc
Confidence 789999999999999986
No 50
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.66 E-value=5.7e-16 Score=139.16 Aligned_cols=114 Identities=21% Similarity=0.235 Sum_probs=90.7
Q ss_pred cceeeecccc---CCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 203 TTELILRCSD---LDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 203 l~v~vi~a~~---L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
|.|.+++|++ |+.+|..|.+||||++.+.. ..+||+++++++||+||| |.|++.. ....|.|+|||+
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~------~~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~ 72 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP------KWVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDN 72 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEECC------EEeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEEC
Confidence 5688999999 89999999999999999843 267999999999999998 8888752 346899999999
Q ss_pred cCCC------CCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEE
Q 007848 279 NSNG------KHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 279 d~~~------~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
+..+ ++++||++.+++.++........+|+|...+.++ -++ .|+|++
T Consensus 73 d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~---~~~-~g~l~~ 125 (126)
T cd08379 73 SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSG---VKK-MGELEC 125 (126)
T ss_pred CCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCC---ccC-CcEEEe
Confidence 9873 8999999999999997533334678887654221 122 787764
No 51
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=1.1e-15 Score=138.99 Aligned_cols=120 Identities=23% Similarity=0.393 Sum_probs=93.4
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcC-CCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVE-SGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~-~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
+.+.+++|++|+.+|..|.+||||++++.+. .+.....++|+++++++||.||+ |.|.+.. ....|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP---REHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC---CCCEEEEEEEECCC
Confidence 5678999999999999999999999999764 23344578999999999999998 7777642 25689999999999
Q ss_pred CCCCceeEEEEEechhhhhccCC------CceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSS------GQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~------~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+++++||++.+++.++...... .+||.|..+.+++ +. .|+|+|.
T Consensus 79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~----~~-~G~l~~~ 129 (133)
T cd04033 79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKS----RV-KGHLRLY 129 (133)
T ss_pred CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCC----cc-eeEEEEE
Confidence 99999999999999999753221 2566664322111 22 8999983
No 52
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.66 E-value=8.3e-16 Score=139.00 Aligned_cols=109 Identities=24% Similarity=0.347 Sum_probs=92.3
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCC-CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEE-eee
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN-IQQ 263 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~-g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~-~~~ 263 (587)
+|+|.+++.+......+.|.+++|+||+..+.. +.+||||++++..+. ..++||+++++++||+||| |.|. +..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~---~~~~kT~v~~~t~nP~wnE~F~f~~~~~ 78 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK---EHKVKTRVLRKTRNPVYDETFTFYGIPY 78 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc---CceeeccEEcCCCCCceeeEEEEcccCH
Confidence 699999999999999999999999999999986 899999999997532 2367999999999999998 6662 221
Q ss_pred cCCCCCcEEEEEEeccCCCCCceeEEEEEechhhh
Q 007848 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 264 l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~ 298 (587)
-...+..|.|+|||++..+++++||++.++|.++.
T Consensus 79 ~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~ 113 (128)
T cd08388 79 NQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD 113 (128)
T ss_pred HHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccC
Confidence 11124579999999999999999999999999995
No 53
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.65 E-value=7.1e-16 Score=137.79 Aligned_cols=105 Identities=25% Similarity=0.433 Sum_probs=85.8
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCC-CceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVES-GTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~-g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+.++++|++|+.+|.+|++|||+++++.... +.+..++||+++++++||+|++ |.|... .+....|.|+|||++.
T Consensus 2 ~~~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~--~~~~~~l~~~V~d~d~ 79 (120)
T cd04048 2 KVELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYY--FEEVQKLRFEVYDVDS 79 (120)
T ss_pred EEEEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEE--eEeeeEEEEEEEEecC
Confidence 35678999999999999999999999998754 4567789999999999999998 666543 1235689999999997
Q ss_pred ----CCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 281 ----NGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 281 ----~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
.+++++||++.+++.+|....+...++.|
T Consensus 80 ~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 80 KSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred CcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 78999999999999999754433344444
No 54
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.65 E-value=6.3e-16 Score=138.53 Aligned_cols=109 Identities=16% Similarity=0.315 Sum_probs=93.1
Q ss_pred cEEEeecceeccccccceeeeccccCCcCC-CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d-~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
|+|.+++.+....+.+.+.+++|++|+.++ .++.+||||++++..++. ..++|+++++++||+||| |.|.+..-.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~---~~~~T~v~~~~~~P~wne~f~f~i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER---RSLQSKVKRKTQNPNFDETFVFQVSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC---CceEeeeEcCCCCCccceEEEEEcCHHH
Confidence 789999999999999999999999999999 788999999999865322 367999999999999999 666654221
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
.....|.|+|||++..+++++||++.++|.++..
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~ 111 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDL 111 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceec
Confidence 1246899999999998889999999999999975
No 55
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.65 E-value=5.7e-16 Score=139.49 Aligned_cols=107 Identities=18% Similarity=0.234 Sum_probs=89.1
Q ss_pred cEEEEE-EEEeCCCCCCC-CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~-~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~ 122 (587)
.++.++ ++|+||+++|. .+.+||||+|++.+. +......||+++++++||.|+|+|.|.+..+. ...|.|.|||+
T Consensus 15 ~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~-~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~ 93 (125)
T cd04029 15 QSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD-KSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHY 93 (125)
T ss_pred CeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC-CccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEEC
Confidence 456665 79999999886 489999999999863 32335789999999999999999999876543 34799999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
|.. +++++||++.++|.++........|++|.
T Consensus 94 ~~~-----------~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 94 DRF-----------GRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred CCC-----------CCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 975 78999999999999998777778899883
No 56
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.65 E-value=1.9e-15 Score=136.25 Aligned_cols=119 Identities=22% Similarity=0.326 Sum_probs=94.9
Q ss_pred EEEE-EEEeCCCCCCC--CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 49 IELS-FSAADLRDRDV--LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 49 ieL~-v~arnL~~~D~--~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
+.+. ++|+||+++|. .+.+||||+|++.. ...||+++++++||.|++.|.|.+.....+.|.|+|||.|..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~ 76 (128)
T cd04024 3 LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRF 76 (128)
T ss_pred EEEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCC
Confidence 3344 68999999998 89999999999853 578999999999999999999988765567999999999965
Q ss_pred ccccccccccccccccccceeeecchhhc---cCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVT---RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~~l~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
+++++||++.++|.++.. ......|++|.++ ....+....|+|++++.
T Consensus 77 -----------~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~-----------~~~~~~~~~G~i~l~~~ 127 (128)
T cd04024 77 -----------AGKDYLGEFDIALEEVFADGKTGQSDKWITLKST-----------RPGKTSVVSGEIHLQFS 127 (128)
T ss_pred -----------CCCCcceEEEEEHHHhhcccccCccceeEEccCc-----------ccCccccccceEEEEEE
Confidence 689999999999999973 2234679999651 10002356899988753
No 57
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.65 E-value=1.5e-15 Score=136.88 Aligned_cols=118 Identities=19% Similarity=0.261 Sum_probs=95.9
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|+||+. ..|++||||++++.. .+ ...||+++++|+||.|+|.|.|.+.. ..+.|.|+|||+|..
T Consensus 6 ~~A~~L~~--~~g~~dpyv~v~~~~-~~---~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~~~v~d~~~~------- 71 (126)
T cd08678 6 IKANGLSE--AAGSSNPYCVLEMDE-PP---QKYQSSTQKNTSNPFWDEHFLFELSP-NSKELLFEVYDNGKK------- 71 (126)
T ss_pred EEecCCCC--CCCCcCCEEEEEECC-CC---cEEEeEEEecCCCCccCceEEEEeCC-CCCEEEEEEEECCCC-------
Confidence 78999988 779999999999853 12 46899999999999999999998854 356899999999976
Q ss_pred cccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecceeccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINS 200 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~ 200 (587)
+++++||++.++|.++...+....|++|.. +.. ......|+|.+.+.+....
T Consensus 72 ----~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~-----------~~~-~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 ----SDSKFLGLAIVPFDELRKNPSGRQIFPLQG-----------RPY-EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred ----CCCceEEEEEEeHHHhccCCceeEEEEecC-----------CCC-CCCCcceEEEEEEEEeccc
Confidence 689999999999999998877788999965 110 0125689999988765543
No 58
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.65 E-value=1.8e-15 Score=140.40 Aligned_cols=125 Identities=18% Similarity=0.207 Sum_probs=95.5
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecC-CCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~-tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
+.+. ++|+||+++|..|++||||+|++.+ ...||+++.+ ++||.|||.|.|.+.....+.|.|.|||.+..
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~- 74 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGP- 74 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCC-
Confidence 3444 6899999999999999999999964 5889999977 69999999999987654456899999999865
Q ss_pred cccccccccccccccccceeeecchhhcc----CCeeEEEEccccccccccccccCCCCCCCCcccEEEeeccee
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTR----KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 197 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~----~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~ 197 (587)
+++++||++.++|.++... .....|++|.+..... + .++ ..+..|+|+|++...
T Consensus 75 ----------~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~----~-~~k--~~k~~g~l~l~i~~~ 132 (150)
T cd04019 75 ----------NKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAM----E-QKK--KRKFASRIHLRLCLD 132 (150)
T ss_pred ----------CCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcc----c-ccc--cCcccccEEEEEEec
Confidence 6789999999999998643 2246899997620000 0 011 225678998887653
No 59
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.65 E-value=1.2e-15 Score=136.51 Aligned_cols=112 Identities=21% Similarity=0.203 Sum_probs=91.7
Q ss_pred EEEeCCCCCC-CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcccccc
Q 007848 53 FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDV 131 (587)
Q Consensus 53 v~arnL~~~D-~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~ 131 (587)
++|+||++++ ..|.+||||.|++.. + ..+||+++++|+||.|+|.|.|.+..+ ...|.|.|||+|..
T Consensus 7 ~~a~~L~~~~~~~g~sDpYv~v~l~~---~--~~~kT~v~~kt~~P~WnE~F~f~v~~~-~~~l~~~v~d~~~~------ 74 (121)
T cd08401 7 GEAKNLPPRSGPNKMRDCYCTVNLDQ---E--EVFRTKTVEKSLCPFFGEDFYFEIPRT-FRHLSFYIYDRDVL------ 74 (121)
T ss_pred EEccCCCCCCCCCCCcCcEEEEEECC---c--cEEEeeEEECCCCCccCCeEEEEcCCC-CCEEEEEEEECCCC------
Confidence 7899999975 457899999999943 2 479999999999999999999998643 46899999999976
Q ss_pred ccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeec
Q 007848 132 KTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 132 ~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
+++++||.+.++|+++........|++|.. ... ..+.+|+|++++
T Consensus 75 -----~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~-----------~~~--~~~~~G~i~l~~ 119 (121)
T cd08401 75 -----RRDSVIGKVAIKKEDLHKYYGKDTWFPLQP-----------VDA--DSEVQGKVHLEL 119 (121)
T ss_pred -----CCCceEEEEEEEHHHccCCCCcEeeEEEEc-----------cCC--CCcccEEEEEEE
Confidence 789999999999999987666778999965 111 124579998865
No 60
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.64 E-value=1.5e-15 Score=140.46 Aligned_cols=128 Identities=20% Similarity=0.215 Sum_probs=94.3
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEee-------------cC--ce
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-------------FE--VV 112 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~-------------~e--~~ 112 (587)
+.+. ++|+||+. ..|.+||||+|++.+.. ......||+++++|+||+|+|.|.|.+. .+ ..
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~-~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYSN-KKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCCc-ccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 4454 78999998 56899999999998622 1124789999999999999999999874 11 23
Q ss_pred eEEEEEEEEcCCCccccccccccccccccccceeeecchhhcc-CCeeEEEEccccccccccccccCCCCCCCCcccEEE
Q 007848 113 QTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR-KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLT 191 (587)
Q Consensus 113 q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~-~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~ 191 (587)
..|.|.|||.+.. ++++|||++.++|.++... .....|++|.++.+...|.-.... +....|.|.
T Consensus 79 ~~L~i~V~d~~~~-----------~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~---~~~~~~~~~ 144 (148)
T cd04010 79 LELRVDLWHASMG-----------GGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSS---KDNSLGSLR 144 (148)
T ss_pred EEEEEEEEcCCCC-----------CCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCccc---ccCCcccEE
Confidence 5799999999865 6899999999999999865 456789999774333333222221 224567776
Q ss_pred ee
Q 007848 192 VH 193 (587)
Q Consensus 192 l~ 193 (587)
+.
T Consensus 145 ~~ 146 (148)
T cd04010 145 LK 146 (148)
T ss_pred Ee
Confidence 64
No 61
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.64 E-value=1.7e-15 Score=136.73 Aligned_cols=118 Identities=20% Similarity=0.240 Sum_probs=98.1
Q ss_pred EEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec--CceeEEEEEEEEcCCCccc
Q 007848 51 LSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF--EVVQTLVFRIYDVDTQFHN 128 (587)
Q Consensus 51 L~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~--e~~q~L~~~V~D~D~~~~~ 128 (587)
|-++|+||++ ..|++||||+|++.. ...||+++++++||.|+|.|.|.+.. ...+.|.|+|||++..
T Consensus 1 ~vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~--- 69 (127)
T cd08373 1 LVVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKV--- 69 (127)
T ss_pred CeEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCC---
Confidence 4589999999 789999999999954 47899999999999999999998754 3567999999999975
Q ss_pred cccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecceecccc
Q 007848 129 VDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSK 201 (587)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~~ 201 (587)
+++++||++.++|+++........|++|.+ ..+ ....|+|++.+.+.+...
T Consensus 70 --------~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~-----------~~~---~~~~~~l~l~~~~~~~~~ 120 (127)
T cd08373 70 --------GRNRLIGSATVSLQDLVSEGLLEVTEPLLD-----------SNG---RPTGATISLEVSYQPPDG 120 (127)
T ss_pred --------CCCceEEEEEEEhhHcccCCceEEEEeCcC-----------CCC---CcccEEEEEEEEEeCCCC
Confidence 689999999999999998777778999965 221 134689999888876554
No 62
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.64 E-value=9.2e-16 Score=136.63 Aligned_cols=96 Identities=16% Similarity=0.188 Sum_probs=78.5
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEc-CCCceeeEEecceecCCCCCceee-ceEEeeec-CCCCCcEEEEEEecc
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIV-ESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFN 279 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~-~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-~~~~~~L~i~V~D~d 279 (587)
+.|.+++|++|+.++. |.+||||+|++.+ ..+....++||+++++++||+||| |.|.+..- ......|.|.|||++
T Consensus 2 L~V~Vi~A~~L~~~d~-g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d 80 (120)
T cd08395 2 VTVKVVAANDLKWQTT-GMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC 80 (120)
T ss_pred EEEEEEECcCCCcccC-CCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence 6788999999999884 9999999999853 112334468999999999999999 77776522 223467999999999
Q ss_pred CCCCCceeEEEEEechhhhh
Q 007848 280 SNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~ 299 (587)
..+++++||++.+++.++..
T Consensus 81 ~~~~dd~IG~~~l~l~~~~~ 100 (120)
T cd08395 81 FARDDRLVGVTVLQLRDIAQ 100 (120)
T ss_pred ccCCCCEEEEEEEEHHHCcC
Confidence 88889999999999999974
No 63
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.64 E-value=8.2e-16 Score=138.08 Aligned_cols=105 Identities=27% Similarity=0.364 Sum_probs=89.9
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
..+.++ ++|+||+++|..+.+||||+|++.+..+ ...||+++++++||.|+|.|.|.+..+. ...|+|+|||+|
T Consensus 16 ~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~---~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d 92 (124)
T cd08385 16 NQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92 (124)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC---CceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 457776 6999999999999999999999986332 4889999999999999999999876533 348999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
.. +++++||++.++|+++..+.....|++|.
T Consensus 93 ~~-----------~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 93 RF-----------SKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CC-----------CCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 75 78999999999999998777778899884
No 64
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.64 E-value=1.4e-15 Score=135.34 Aligned_cols=112 Identities=21% Similarity=0.310 Sum_probs=89.1
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecC-CCCCceee-ceEEeeecCCCCCcEEEEEEecc
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~-tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d 279 (587)
.+.+.+++|++|+.++.++++||||++++.. .++||+++++ ++||.||+ |.|.+.. +....|.|+|||++
T Consensus 2 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~~l~i~v~d~~ 73 (118)
T cd08681 2 TLVVVVLKARNLPNKRKLDKQDPYCVLRIGG------VTKKTKTDFRGGQHPEWDEELRFEITE--DKKPILKVAVFDDD 73 (118)
T ss_pred EEEEEEEEccCCCCCCcCCCCCceEEEEECC------CccccccccCCCCCCccCceEEEEecC--CCCCEEEEEEEeCC
Confidence 4678899999999999999999999999843 2679998865 79999998 7776652 34678999999999
Q ss_pred CCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 280 SNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
..+ +++||++.+++.++........|++|..+. +. +|.|+|.
T Consensus 74 ~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~-------~~-~G~i~l~ 115 (118)
T cd08681 74 KRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKG-------RY-AGEVYLE 115 (118)
T ss_pred CCC-CcceEEEEEecHHHhhcCCCCCcEEeccCC-------cE-eeEEEEE
Confidence 876 899999999999997544445667664321 12 8999984
No 65
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.64 E-value=1.1e-15 Score=137.96 Aligned_cols=117 Identities=14% Similarity=0.174 Sum_probs=89.8
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-CCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-~~~~~~L~i~V~D~d~ 280 (587)
+.|.+++|++|+..|..|.+||||++++.+ ..+||+++++++||+||| |.|.+... ......|.|+|||++.
T Consensus 2 L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~------~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 2 LVVEVVDAQDLMPKDGQGSSSAYVELDFDG------QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred eEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 678899999999999999999999999843 267999999999999998 77776432 1124679999999998
Q ss_pred CC-CCceeEEEEEechhhhh-ccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NG-KHDLIGKVQKSLADLEK-LHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~-~dd~IG~~~i~l~~l~~-~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+ ++++||++.+++.++.. ......|++|..+.+ .+ +. +|+|.|.
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~---~~-~~-~G~l~l~ 122 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGL---FS-RV-RGEIGLK 122 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCC---CC-Cc-cEEEEEE
Confidence 86 78999999999999962 222345666643221 11 22 8999884
No 66
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.64 E-value=1.5e-15 Score=135.27 Aligned_cols=113 Identities=17% Similarity=0.313 Sum_probs=91.9
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+.+.+++|++|+.++.++.+||||++++.. ..++|+++++++||.|++ |.+.+.. ....|.|+|||++.
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~~---~~~~l~~~v~d~~~ 72 (119)
T cd08377 2 FLQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIKD---IHDVLEVTVYDEDK 72 (119)
T ss_pred EEEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecCCcCCccCcEEEEEecC---cCCEEEEEEEECCC
Confidence 4567899999999999999999999999843 157999999999999998 7777653 35799999999999
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+++++||++.+++.++.. +...|+.+..+....+ . .|+|.|.
T Consensus 73 ~~~~~~iG~~~~~l~~~~~--~~~~~~~l~~~~~~~~----~-~G~i~l~ 115 (119)
T cd08377 73 DKKPEFLGKVAIPLLSIKN--GERKWYALKDKKLRTR----A-KGSILLE 115 (119)
T ss_pred CCCCceeeEEEEEHHHCCC--CCceEEECcccCCCCc----e-eeEEEEE
Confidence 8899999999999999953 4456777765443222 2 8999884
No 67
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.64 E-value=2.1e-15 Score=140.03 Aligned_cols=126 Identities=16% Similarity=0.206 Sum_probs=94.9
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecC-CCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~-tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
+.+.+++|++|+.+|.+|.+||||++++.+ ..+||+++++ ++||+||| |.|.+.. .....|.|+|||++.
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~------~~~kTk~~~~~t~nP~WNE~F~f~v~~--~~~~~l~v~V~d~~~ 73 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGN------QVLRTRPSQTRNGNPSWNEELMFVAAE--PFEDHLILSVEDRVG 73 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEECC------EEeeeEeccCCCCCCcccCcEEEEecC--ccCCeEEEEEEEecC
Confidence 568899999999999999999999999943 3679999877 69999999 8887653 224689999999998
Q ss_pred CCCCceeEEEEEechhhhhc----cCCCceeEeeccccc--CCCCcccccccEEEeEeeeeeee
Q 007848 281 NGKHDLIGKVQKSLADLEKL----HSSGQGQNLFLSTAA--GNNNHKILNSQLFVDKFSESVQY 338 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~----~~~~~~~~l~~~~k~--~k~~~~~~~G~i~l~~~~~~~~~ 338 (587)
.+++++||++.++|.++... ....+|++|..+.+. +|++.+. +|+|+|. +.+...+
T Consensus 74 ~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~-~g~l~l~-i~~~~~~ 135 (150)
T cd04019 74 PNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKF-ASRIHLR-LCLDGGY 135 (150)
T ss_pred CCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcc-cccEEEE-EEecCcc
Confidence 88899999999999998532 112467887665421 1222333 8999984 3343333
No 68
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.64 E-value=7.8e-16 Score=138.39 Aligned_cols=119 Identities=18% Similarity=0.222 Sum_probs=97.3
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEE-eeec
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLN-IQQV 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~-~~~l 264 (587)
.|+|.+++.+.+....+.|.+++|+||+..+..+.+||||++++.... ...+||+++++ +||+||| |.|+ +..-
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~---~~~~kTkv~~~-~nP~fnE~F~f~~i~~~ 77 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK---KQRAKTKVQRG-PNPVFNETFTFSRVEPE 77 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC---cceeecccccC-CCCcccCEEEECCCCHH
Confidence 599999999999999999999999999999998999999999886632 24789999988 9999999 7776 3221
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
...+..|.|+|||++..+++++||++.++|.++........|+.|
T Consensus 78 ~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L 122 (124)
T cd08389 78 ELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTL 122 (124)
T ss_pred HhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeC
Confidence 223678999999999999999999999999999643333334443
No 69
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.64 E-value=9.2e-16 Score=135.15 Aligned_cols=100 Identities=20% Similarity=0.314 Sum_probs=83.2
Q ss_pred EEEE-EEEeCCCCCCCC-CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC---ceeEEEEEEEEcC
Q 007848 49 IELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDVD 123 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~-gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e---~~q~L~~~V~D~D 123 (587)
++++ ++|++|+.+|.. +++||||+|++.. .++ ...||+++++|+||.|+|.|.|.+..+ ..+.|.|+|||+|
T Consensus 3 L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-~~~--~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAK-FGK--PLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred EEEEEEEeeCCCcccCCCCCCCccEEEEEcc-CCC--ccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 4555 689999999998 9999999999865 232 578999999999999999999877654 3468999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
.. +++++||++.++++++... .-|+++.
T Consensus 80 ~~-----------~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 80 RF-----------TADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CC-----------CCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 76 7899999999999999843 3466653
No 70
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.64 E-value=7.6e-15 Score=166.02 Aligned_cols=103 Identities=25% Similarity=0.369 Sum_probs=85.8
Q ss_pred ccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 200 SKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 200 ~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
++.+.+....|.||+..|.+|.+||||++.+.. ..+|||+++|+|+||+||| +.+++. ......+.|.|+||
T Consensus 1039 sG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~-----k~vyktkv~KktlNPvwNEe~~i~v~--~r~~D~~~i~v~Dw 1111 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSSDENGYSDPFVKLFLNE-----KSVYKTKVVKKTLNPVWNEEFTIEVL--NRVKDVLTINVNDW 1111 (1227)
T ss_pred cCcEEEEEeccCCCcccccCCCCCceEEEEecc-----eecccccchhccCCCCccccceEeee--ccccceEEEEEeec
Confidence 456777889999999999999999999999943 2389999999999999998 766665 45578999999999
Q ss_pred cCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 279 NSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
|...+++.||.++++|..|.. +....+.+..
T Consensus 1112 d~~~knd~lg~~~idL~~l~~--~~~~n~~i~l 1142 (1227)
T COG5038 1112 DSGEKNDLLGTAEIDLSKLEP--GGTTNSNIPL 1142 (1227)
T ss_pred ccCCCccccccccccHhhcCc--CCccceeeec
Confidence 999999999999999999964 3333444433
No 71
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.64 E-value=3.3e-16 Score=142.46 Aligned_cols=119 Identities=18% Similarity=0.231 Sum_probs=96.8
Q ss_pred EEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCC
Q 007848 190 LTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKD 268 (587)
Q Consensus 190 I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~ 268 (587)
|.+++.+....+.+.|.+++|++|+.+|..|.+||||++++.+. +.+..++||+++++++||+||| |.|.+..-....
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPD-AGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcC-CCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 67888888888999999999999999999999999999999763 4445678999999999999998 666654211125
Q ss_pred CcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 269 SPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 269 ~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
..|.|+|||++..+++++||++.+++... ......|+++++
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~--~~~~~~W~~~l~ 121 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAK--GERLRHWLDCLK 121 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCC--CchHHHHHHHHh
Confidence 68999999999988999999999999863 233345666654
No 72
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.63 E-value=1e-15 Score=139.79 Aligned_cols=122 Identities=19% Similarity=0.264 Sum_probs=98.6
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
.|+|.+++.+.+..+.+.+.+++|++|+.+|..|.+||||++++.. +++....++|+++++++||.||| |.|.+..-.
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ-NGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE-CCcccceeeccceeCCCCCcccceEEEECCHHH
Confidence 4899999999999999999999999999999999999999999965 34455678999999999999998 666643111
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
.....|.|+|||++..+++++||++.+++... ..+...|++++.
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~ 123 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLA 123 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHh
Confidence 11357999999999999999999999999764 222334555544
No 73
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.63 E-value=2.3e-15 Score=135.19 Aligned_cols=100 Identities=24% Similarity=0.435 Sum_probs=84.4
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
++++ ++|++|+++|..+++||||++++.+ . ..+||+++++++||.|+|.|.|.+.. .+.|.|+|||++..
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~--~---~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~l~i~V~d~~~~-- 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG--G---QTHSTDVAKKTLDPKWNEHFDLTVGP--SSIITIQVFDQKKF-- 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC--c---cceEccEEcCCCCCcccceEEEEeCC--CCEEEEEEEECCCC--
Confidence 5565 6899999999999999999999953 1 58899999999999999999998864 57999999999875
Q ss_pred ccccccccccc--cccccceeeecchhhccCCe-eEEEEccc
Q 007848 128 NVDVKTLKLVE--QQFLGEATCTLSQIVTRKNR-SLTLDLVR 166 (587)
Q Consensus 128 ~~~~~~~~l~~--~d~LG~~~i~L~~l~~~~~~-~l~~~L~~ 166 (587)
++ +++||++.+++.++....+. ..|++|..
T Consensus 73 ---------~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~ 105 (123)
T cd08382 73 ---------KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRK 105 (123)
T ss_pred ---------CCCCCceEeEEEEEHHHccccCCCccceeEeec
Confidence 33 58999999999999865433 56888854
No 74
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.63 E-value=1.5e-15 Score=136.40 Aligned_cols=105 Identities=17% Similarity=0.276 Sum_probs=89.3
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
..+.+. ++|+||+++|..|.+||||+|++.+... ..+||+++++++||.|+|.|.|.+..+. ...|+|+|||.|
T Consensus 16 ~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~---~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~ 92 (124)
T cd08387 16 GILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS---NTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD 92 (124)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC---CcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence 345555 7899999999999999999999975322 4789999999999999999999876543 458999999998
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
.. +++++||++.++|+++........|++|.
T Consensus 93 ~~-----------~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 93 QF-----------SRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CC-----------CCCceeEEEEEecccccCCCCcceEEECc
Confidence 65 78999999999999998777778899984
No 75
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=6.4e-16 Score=141.47 Aligned_cols=89 Identities=19% Similarity=0.419 Sum_probs=81.0
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
-+.+.+++|.+|...|+.++|||||++.++++ ..||+++++++||+||+ |.|++. +.+.+|+++|||+|.
T Consensus 7 LL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q------~lkT~~v~~n~NPeWNe~ltf~v~---d~~~~lkv~VyD~D~ 77 (168)
T KOG1030|consen 7 LLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQ------KLKTRVVYKNLNPEWNEELTFTVK---DPNTPLKVTVYDKDT 77 (168)
T ss_pred EEEEEEEeecCeeeeccccCCCCeEEEEECCe------eeeeeeecCCCCCcccceEEEEec---CCCceEEEEEEeCCC
Confidence 45677899999999999899999999999664 78999999999999998 888886 668999999999999
Q ss_pred CCCCceeEEEEEechhhhh
Q 007848 281 NGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~ 299 (587)
+++||+||.++|+|..+..
T Consensus 78 fs~dD~mG~A~I~l~p~~~ 96 (168)
T KOG1030|consen 78 FSSDDFMGEATIPLKPLLE 96 (168)
T ss_pred CCcccccceeeeccHHHHH
Confidence 9999999999999999975
No 76
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.63 E-value=1.3e-15 Score=139.53 Aligned_cols=110 Identities=14% Similarity=0.245 Sum_probs=95.8
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|.+++.+....+.+.|.+++|+||+.++..+.+||||++++.+.+++....+||+++++++||+||| |.|++..-..
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 689999999988999999999999999999999999999999987556555678999999999999999 7776643222
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
.+..|.|+|||++..+++++||++.+++...
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~ 112 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSS 112 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCC
Confidence 3679999999999999999999999998755
No 77
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.63 E-value=1e-15 Score=139.88 Aligned_cols=122 Identities=18% Similarity=0.255 Sum_probs=98.4
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
+|+|.+++.+.+..+.+.+.+++|+||+.++.+|.+||||++++.. .+.....+||+++++++||.||| |.|.+..-.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~-~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMY-KDKRVEKKKTVIKKRTLNPVFNESFIFNIPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEe-CCCccccccCcceeCCCCCcccceEEEeCCHHH
Confidence 4899999999988899999999999999999999999999999864 23344578999999999999998 666543111
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
..+..|.|+|||++..+++++||++.+++.+. ......|++++.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~ 123 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS 123 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence 12568999999999999999999999999886 223334555544
No 78
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.63 E-value=1.5e-15 Score=135.46 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=86.3
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+..+.++.+||||++++.+. + ...+||+++++++||+||+ |.|.+.. .....|.|+|||++..
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~--~~~~kT~vv~~t~nP~Wne~f~f~i~~--~~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-S--DEKKRTKTIKNSINPVWNETFEFRIQS--QVKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-C--CccCccceecCCCCCccceEEEEEeCc--ccCCEEEEEEEECCCC
Confidence 5678999999999999999999999998542 1 2368999999999999998 7776652 2356799999999998
Q ss_pred CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEE
Q 007848 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
++++||++.+++.++........++++.. + + +|.|++
T Consensus 77 -~~~~iG~~~~~l~~l~~g~~~~~~~~L~~-~----~-----~g~l~~ 113 (119)
T cd04036 77 -MDDHLGTVLFDVSKLKLGEKVRVTFSLNP-Q----G-----KEELEV 113 (119)
T ss_pred -CCcccEEEEEEHHHCCCCCcEEEEEECCC-C----C-----CceEEE
Confidence 88999999999999964322233444321 1 1 788887
No 79
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.63 E-value=1e-15 Score=140.19 Aligned_cols=90 Identities=30% Similarity=0.455 Sum_probs=80.7
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
++++ +++.||..+|..++|||||+|.+++ +..||+++.+++||+|||.|.|.+.. ....|++.|||+|++
T Consensus 8 L~v~v~~g~~L~~rD~~~sSDPyVVl~lg~------q~lkT~~v~~n~NPeWNe~ltf~v~d-~~~~lkv~VyD~D~f-- 78 (168)
T KOG1030|consen 8 LRVRVKRGKNLAIRDFLGSSDPYVVLELGN------QKLKTRVVYKNLNPEWNEELTFTVKD-PNTPLKVTVYDKDTF-- 78 (168)
T ss_pred EEEEEEeecCeeeeccccCCCCeEEEEECC------eeeeeeeecCCCCCcccceEEEEecC-CCceEEEEEEeCCCC--
Confidence 5555 6899999999999999999999976 69999999999999999999998874 456999999999987
Q ss_pred ccccccccccccccccceeeecchhhccC
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~ 156 (587)
+++||||+++++|..+....
T Consensus 79 ---------s~dD~mG~A~I~l~p~~~~~ 98 (168)
T KOG1030|consen 79 ---------SSDDFMGEATIPLKPLLEAQ 98 (168)
T ss_pred ---------CcccccceeeeccHHHHHHh
Confidence 78999999999999988653
No 80
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.62 E-value=9e-16 Score=137.68 Aligned_cols=107 Identities=15% Similarity=0.157 Sum_probs=89.1
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~D 123 (587)
.++.+. ++|+||+++|..+.+||||+|++.++.++.....||+++++++||+|+|+|.|.+..++. ..|.|.|||.|
T Consensus 14 ~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~ 93 (124)
T cd08680 14 SSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVG 93 (124)
T ss_pred CEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCC
Confidence 567776 689999999988999999999999855433358899999999999999999998776543 48999999998
Q ss_pred CCccccccccccccccccccceeeecchhhcc-CCeeEEEEc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR-KNRSLTLDL 164 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~-~~~~l~~~L 164 (587)
.. +++++||++.++|+++... +....|++|
T Consensus 94 ~~-----------~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 94 PD-----------QQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred CC-----------CceeEEEEEEEEhhhccCCCccccccccC
Confidence 65 7899999999999999544 345667765
No 81
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.62 E-value=2.5e-15 Score=137.29 Aligned_cols=92 Identities=22% Similarity=0.351 Sum_probs=79.8
Q ss_pred ccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 200 SKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 200 ~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
-+.+.+.+++|++|+..|.+|.+||||++++.. ..+||+++++++||.||+ |.|.+... ....|.|+|||+
T Consensus 14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~------~~~kT~vi~~t~nP~Wne~f~f~v~~~--~~~~l~i~V~D~ 85 (136)
T cd08375 14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS------QEHKTKVVSDTLNPKWNSSMQFFVKDL--EQDVLCITVFDR 85 (136)
T ss_pred cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC------EeeeccccCCCCCCccCceEEEEecCc--cCCEEEEEEEEC
Confidence 355777799999999999999999999999843 268999999999999998 77776532 257899999999
Q ss_pred cCCCCCceeEEEEEechhhhh
Q 007848 279 NSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~ 299 (587)
+..+++++||++.+++.++..
T Consensus 86 d~~~~d~~lG~~~i~l~~l~~ 106 (136)
T cd08375 86 DFFSPDDFLGRTEIRVADILK 106 (136)
T ss_pred CCCCCCCeeEEEEEEHHHhcc
Confidence 999999999999999999974
No 82
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.62 E-value=2.8e-15 Score=134.19 Aligned_cols=112 Identities=21% Similarity=0.334 Sum_probs=91.0
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|+++|..|++||||+|++.+ + .++||+++++++||.|+|.|.|.+.. ..+.|.|+|||.|..
T Consensus 7 i~a~~L~~~d~~g~~DPYv~v~~~~---~--~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~~l~v~v~d~~~~------- 73 (121)
T cd04054 7 VEGKNLPAKDITGSSDPYCIVKVDN---E--VIIRTATVWKTLNPFWGEEYTVHLPP-GFHTVSFYVLDEDTL------- 73 (121)
T ss_pred EEeeCCcCCCCCCCCCceEEEEECC---E--eeeeeeeEcCCCCCcccceEEEeeCC-CCCEEEEEEEECCCC-------
Confidence 6899999999999999999999853 2 46899999999999999999998753 346899999999975
Q ss_pred cccccccccccceeeecchhhccC-CeeEEEEccccccccccccccCCCCCCCCcccEEEeec
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRK-NRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~-~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
+++++||++.+++.++...+ ....|++|.+ ... .....|+|++..
T Consensus 74 ----~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~-----------~~~--~~~~~G~i~l~~ 119 (121)
T cd04054 74 ----SRDDVIGKVSLTREVISAHPRGIDGWMNLTE-----------VDP--DEEVQGEIHLEL 119 (121)
T ss_pred ----CCCCEEEEEEEcHHHhccCCCCCCcEEECee-----------eCC--CCccccEEEEEE
Confidence 78999999999999887543 3568999965 111 224578888764
No 83
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.62 E-value=1.4e-15 Score=138.54 Aligned_cols=108 Identities=22% Similarity=0.379 Sum_probs=92.1
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|.+++.+.+..+.+.+.+++|++|+.+|.+|.+||||++++.. ++.+...+||+++++++||.|++ |.|.+..-.-
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMC-EGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEe-CCcccceecCCcccCCCCCcccceEEEECCHHHh
Confidence 789999999999999999999999999999999999999999975 35555688999999999999998 6665432111
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechh
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~ 296 (587)
....|.|+|||++..+++++||++.+++..
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 135799999999999999999999999873
No 84
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.62 E-value=4.5e-15 Score=132.88 Aligned_cols=115 Identities=15% Similarity=0.150 Sum_probs=88.6
Q ss_pred cceeeeccccCCcCC-CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d-~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
+.+.+++|+||+.++ ..|.+||||++++.. ..++||+++++|+||.||| |.|.+. +....|.|.|||++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~-----~~~~kT~v~~kt~~P~WnE~F~f~v~---~~~~~l~~~v~d~~~ 73 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQ-----EEVFRTKTVEKSLCPFFGEDFYFEIP---RTFRHLSFYIYDRDV 73 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEECC-----ccEEEeeEEECCCCCccCCeEEEEcC---CCCCEEEEEEEECCC
Confidence 457789999999975 568899999998832 1368999999999999998 777764 225799999999999
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+++++||.+.++++++........|++|....+.+ +. .|.|+|.
T Consensus 74 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~----~~-~G~i~l~ 118 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADS----EV-QGKVHLE 118 (121)
T ss_pred CCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCC----cc-cEEEEEE
Confidence 999999999999999997433233466664332211 12 8999885
No 85
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.62 E-value=3e-15 Score=132.73 Aligned_cols=89 Identities=20% Similarity=0.325 Sum_probs=77.7
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.|.+++|++|+.+|.++.+|||+++++.+ ..+||+++++++||.||+ |.|.+.. .....|.|+|||++..
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~ 73 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRLGN------EKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTG 73 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEECC------EeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCC
Confidence 457799999999999999999999999833 268999999999999999 7777652 3368999999999999
Q ss_pred CCCceeEEEEEechhhhh
Q 007848 282 GKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~ 299 (587)
+++++||++.+++.++..
T Consensus 74 ~~~~~iG~~~~~l~~l~~ 91 (116)
T cd08376 74 KKDEFIGRCEIDLSALPR 91 (116)
T ss_pred CCCCeEEEEEEeHHHCCC
Confidence 999999999999999964
No 86
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.62 E-value=3.9e-15 Score=132.78 Aligned_cols=100 Identities=25% Similarity=0.358 Sum_probs=85.6
Q ss_pred EEEE-EEEeCCCCCCC------CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEE
Q 007848 49 IELS-FSAADLRDRDV------LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYD 121 (587)
Q Consensus 49 ieL~-v~arnL~~~D~------~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D 121 (587)
+.++ ++|+||+++|. .|++||||+|++.+ ..+||+++++++||.|+|.|.|.+.....+.|.|+|||
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d 76 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFD 76 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEe
Confidence 4454 68999999886 36899999999954 58999999999999999999988876667899999999
Q ss_pred cCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.|.. ++++||++.++|.++........|++|.+
T Consensus 77 ~~~~------------~~~~iG~~~i~l~~l~~~~~~~~w~~L~~ 109 (121)
T cd08391 77 EDPD------------KDDFLGRLSIDLGSVEKKGFIDEWLPLED 109 (121)
T ss_pred cCCC------------CCCcEEEEEEEHHHhcccCccceEEECcC
Confidence 9852 68999999999999987666678999964
No 87
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.62 E-value=1.7e-15 Score=138.28 Aligned_cols=109 Identities=18% Similarity=0.280 Sum_probs=90.7
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|.+++.+.+..+.+.+.+++|++|+.+|.+|.+||||++++.. +++....+||+++++++||.||| |.|.+..-.-
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHh
Confidence 789999999999999999999999999999999999999999854 33445578999999999999999 6666521111
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
.+..|.|+|||++..+++++||++.++....
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 1457999999999999999999998776444
No 88
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.62 E-value=2.4e-15 Score=135.14 Aligned_cols=106 Identities=28% Similarity=0.356 Sum_probs=86.5
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec-C--ceeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-E--VVQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~-e--~~q~L~~~V~D~ 122 (587)
.++.++ ++|++|+.+|..+.+||||+|++.+. +....+.||+++++++||.|+|+|.|.+.. + ....|+|+|||+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~ 94 (125)
T cd04031 16 SQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPD-RSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDY 94 (125)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCEEEEEEccC-CCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeC
Confidence 456666 78999999999999999999999762 223468899999999999999999987533 2 346899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
|.. +++++||++.++|++. ...+...|++|+
T Consensus 95 ~~~-----------~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 95 DRD-----------GENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred CCC-----------CCCcEeeEEEEecccc-cccCCcceEECc
Confidence 975 6899999999999993 334556899884
No 89
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.61 E-value=6.9e-15 Score=130.91 Aligned_cols=114 Identities=22% Similarity=0.376 Sum_probs=92.5
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
++++ ++|+||+.+|..+++||||+|++.. ..+||+++++++||.|+++|.|... +..+.|.|+|||++..
T Consensus 3 l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~------~~~~T~~~~~t~nP~W~e~f~~~~~-~~~~~l~~~v~d~~~~-- 73 (119)
T cd08377 3 LQVKVIRASGLAAADIGGKSDPFCVLELVN------ARLQTHTIYKTLNPEWNKIFTFPIK-DIHDVLEVTVYDEDKD-- 73 (119)
T ss_pred EEEEEEeeeCCCCCCCCCCCCcEEEEEECC------EeeecceecCCcCCccCcEEEEEec-CcCCEEEEEEEECCCC--
Confidence 4454 7899999999999999999999854 3679999999999999999998864 3356899999999865
Q ss_pred ccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
+++++||++.+++.++... ...|++|.+ ... +.+..|+|.+.++
T Consensus 74 ---------~~~~~iG~~~~~l~~~~~~--~~~~~~l~~-----------~~~--~~~~~G~i~l~~~ 117 (119)
T cd08377 74 ---------KKPEFLGKVAIPLLSIKNG--ERKWYALKD-----------KKL--RTRAKGSILLEMD 117 (119)
T ss_pred ---------CCCceeeEEEEEHHHCCCC--CceEEECcc-----------cCC--CCceeeEEEEEEE
Confidence 6899999999999998654 457999865 211 2246899988754
No 90
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.61 E-value=7e-15 Score=132.78 Aligned_cols=124 Identities=19% Similarity=0.353 Sum_probs=92.1
Q ss_pred EEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 48 ~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
++++. ++|++|+.+|..|++||||+|++.. ..+||+++++++||.|+|.|.|....+ ...|.|+|||+|...
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~~~-~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECHNS-SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecCCCCCccceEEEEEecCC-CCEEEEEEEECCCCc
Confidence 35555 7899999999999999999999853 478999999999999999999876533 468999999998520
Q ss_pred cccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEee
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVH 193 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~ 193 (587)
..........+++++||++.+++.++.. ....|++|.+ +.. +...+|+|.++
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~--~~~~w~~L~~-----------~~~--~~~~~G~i~~~ 126 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSG--EMDVWYNLEK-----------RTD--KSAVSGAIRLH 126 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccC--CCCeEEECcc-----------CCC--CCcEeEEEEEE
Confidence 0000000011468999999999998753 3568999975 222 33568999876
No 91
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.61 E-value=3.1e-14 Score=161.18 Aligned_cols=263 Identities=19% Similarity=0.308 Sum_probs=175.9
Q ss_pred ccEEEEEE-EEeCCCCCC--CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEc
Q 007848 46 FSQIELSF-SAADLRDRD--VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDV 122 (587)
Q Consensus 46 ~~~ieL~v-~arnL~~~D--~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~ 122 (587)
--.|+++| +|++|...| +.+..|||+.+...+. ..+||++.++++||+|||+|-+.+. .-.++|.++|||.
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r-----~~gkT~v~~nt~nPvwNEt~Yi~ln-s~~d~L~LslyD~ 508 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDR-----VIGKTRVKKNTLNPVWNETFYILLN-SFTDPLNLSLYDF 508 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEeccc-----cCCccceeeccCCccccceEEEEec-ccCCceeEEEEec
Confidence 45688886 799999999 6799999999997541 5889999999999999999976654 3446999999998
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCe---------------eEEEEcc------cc-------------c
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR---------------SLTLDLV------RR-------------E 168 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~---------------~l~~~L~------~~-------------~ 168 (587)
+.. .+++.+|.+.++|..|...+.. ++.+++. .+ .
T Consensus 509 n~~-----------~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n 577 (1227)
T COG5038 509 NSF-----------KSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSN 577 (1227)
T ss_pred ccc-----------CCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCC
Confidence 865 6899999999999876543321 1222220 00 0
Q ss_pred cccc---------------------------------ccccc-----------------C-------------CC-----
Q 007848 169 ETIT---------------------------------PITEE-----------------S-------------NP----- 180 (587)
Q Consensus 169 ~~~~---------------------------------~~~~~-----------------~-------------~~----- 180 (587)
++|. +.+.. + .+
T Consensus 578 ~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~ 657 (1227)
T COG5038 578 TGILKVTLREVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIAT 657 (1227)
T ss_pred cceeEEEeeccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceecc
Confidence 0000 00000 0 00
Q ss_pred --C-----------C-----CCCcccEEEeecc----e-----------eccccccceeeeccccCCcCCCCCCCCcEEE
Q 007848 181 --S-----------N-----RPKHCGKLTVHAE----E-----------CINSKTTTELILRCSDLDCKDLFSRNDPFLV 227 (587)
Q Consensus 181 --~-----------~-----~~~~~G~I~l~~~----~-----------~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~ 227 (587)
+ + ....+|+|.++.- + ...-+.+.+.+..|.+|......+++|||++
T Consensus 658 ~~~~l~~li~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~ 737 (1227)
T COG5038 658 EGSTLPDLIDRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYAT 737 (1227)
T ss_pred ccccchHhhhccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceE
Confidence 0 0 0012355554321 0 1112345567888999998889999999999
Q ss_pred EEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCce
Q 007848 228 ISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQG 306 (587)
Q Consensus 228 v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~ 306 (587)
+...+ ..++||-....++||.|++ ..+++. .....+.+++.|+...++|.+||++.+++.++........-
T Consensus 738 v~~n~-----~~k~rti~~~~~~npiw~~i~Yv~v~---sk~~r~~l~~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~ 809 (1227)
T COG5038 738 VLVNN-----LVKYRTIYGSSTLNPIWNEILYVPVT---SKNQRLTLECMDYEESGDDRNLGEVNINVSNVSKKDEDSAL 809 (1227)
T ss_pred EEecc-----eeEEEEecccCccccceeeeEEEEec---CCccEEeeeeecchhccccceeceeeeeeeeeeecCCCcce
Confidence 98843 4689999999999999999 334543 33556999999999999999999999999999652222223
Q ss_pred eEeeccccc-CCCCc--ccccccEEEeEeee
Q 007848 307 QNLFLSTAA-GNNNH--KILNSQLFVDKFSE 334 (587)
Q Consensus 307 ~~l~~~~k~-~k~~~--~~~~G~i~l~~~~~ 334 (587)
..-++..+. +|-.. ++++|++.+ +|.+
T Consensus 810 ~~~i~g~~~t~~l~~~~~~~~~tit~-~~~f 839 (1227)
T COG5038 810 METIDGAEETGKLSLTGKKVKGTITY-KCRF 839 (1227)
T ss_pred EEeecCcccccccccccCCcceeEEE-EEEE
Confidence 333443322 12122 345899888 4544
No 92
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.61 E-value=5e-15 Score=133.52 Aligned_cols=118 Identities=17% Similarity=0.279 Sum_probs=91.4
Q ss_pred ccceeeeccccCCcCCC--CCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 202 TTTELILRCSDLDCKDL--FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~--~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
.+.+.+++|++|+.++. .+.+||||++++.. ..++|+++++++||.||+ |.|++.. .....|.|+|||+
T Consensus 2 ~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~------~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~ 73 (128)
T cd04024 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGA------QRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDK 73 (128)
T ss_pred EEEEEEEEeeCCCcccCCCCCCcCCeEEEEECC------EEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEEC
Confidence 35678999999999998 89999999998832 368999999999999998 8887763 2368999999999
Q ss_pred cCCCCCceeEEEEEechhhhhc---cCCCceeEeecccccCCCCcccccccEEEe
Q 007848 279 NSNGKHDLIGKVQKSLADLEKL---HSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~~---~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
+..+++++||++.+++.++... .....|+.|... +.. ++++. +|+|+|+
T Consensus 74 ~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~-~~~-~~~~~-~G~i~l~ 125 (128)
T cd04024 74 DRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKST-RPG-KTSVV-SGEIHLQ 125 (128)
T ss_pred CCCCCCCcceEEEEEHHHhhcccccCccceeEEccCc-ccC-ccccc-cceEEEE
Confidence 9988999999999999999631 112345555433 212 22233 9999984
No 93
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.61 E-value=5.2e-15 Score=133.39 Aligned_cols=115 Identities=14% Similarity=0.227 Sum_probs=88.1
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+++.+++|++|+. .+|.+||||++++... ...+||+++++++||.||+ |.|.+. .....|.|+|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~---~~~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEP----PQKYQSSTQKNTSNPFWDEHFLFELS---PNSKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECCC----CcEEEeEEEecCCCCccCceEEEEeC---CCCCEEEEEEEECCCC
Confidence 4688999999998 7789999999998421 2368999999999999998 666653 2367899999999999
Q ss_pred CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
+++++||++.+++.++........++++.. +. .+ +.+ ..|+|.+.
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~-~~-~~-~~~-~~G~l~l~ 116 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQG-RP-YE-GDS-VSGSITVE 116 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecC-CC-CC-CCC-cceEEEEE
Confidence 999999999999999975444444555432 21 11 122 28999983
No 94
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.61 E-value=4.5e-15 Score=134.18 Aligned_cols=105 Identities=16% Similarity=0.256 Sum_probs=84.8
Q ss_pred cEEEEE-EEEeCCCCCCCC-CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEE-eecCc--eeEEEEEEEE
Q 007848 47 SQIELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEV--VQTLVFRIYD 121 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~-gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~-~~~e~--~q~L~~~V~D 121 (587)
..+.++ ++|+||+.+|.. +.+||||+|++.+..+ .+.||+++++++||.|+|+|.|. +..+. ...|+|.|||
T Consensus 16 ~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~---~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d 92 (128)
T cd08388 16 KALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE---HKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLS 92 (128)
T ss_pred CEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC---ceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEE
Confidence 567776 689999999986 9999999999976332 47899999999999999999983 33222 2379999999
Q ss_pred cCCCccccccccccccccccccceeeecchhhcc--CCeeEEEEcc
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR--KNRSLTLDLV 165 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~--~~~~l~~~L~ 165 (587)
+|.. +++++||++.++|+++... ....+|++|.
T Consensus 93 ~d~~-----------~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 93 FDRY-----------SRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred cCCC-----------CCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 9975 7899999999999999655 3345788774
No 95
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.61 E-value=5.2e-16 Score=158.63 Aligned_cols=124 Identities=20% Similarity=0.348 Sum_probs=101.8
Q ss_pred CCCcccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEe
Q 007848 183 RPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNI 261 (587)
Q Consensus 183 ~~~~~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~ 261 (587)
+.+.+|.|.+.++- ....+.|.+.+|+||.+||.+|.|||||++.+.++ .+-..+.||++++.+|||+||| |.+.+
T Consensus 164 htE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD-~~~~sKqKTkTik~~LNP~wNEtftf~L 240 (683)
T KOG0696|consen 164 HTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPD-PKNESKQKTKTIKATLNPVWNETFTFKL 240 (683)
T ss_pred chhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccC-CcchhhhhhhhhhhhcCccccceeEEec
Confidence 44678999987764 56678899999999999999999999999999874 3345688999999999999999 65554
Q ss_pred eecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 262 QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 262 ~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
.. +|.++.|.|+|||||..+++||+|...+.+++|+.. ....||.|++
T Consensus 241 kp-~DkdrRlsiEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLs 288 (683)
T KOG0696|consen 241 KP-SDKDRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLS 288 (683)
T ss_pred cc-ccccceeEEEEecccccccccccceecccHHHHhhc-chhhHHHHhh
Confidence 32 578899999999999999999999999999999752 2333444443
No 96
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.61 E-value=3.9e-15 Score=133.38 Aligned_cols=105 Identities=22% Similarity=0.338 Sum_probs=90.1
Q ss_pred cEEEEE-EEEeCCCCCC-CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D-~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~ 122 (587)
.++.+. ++|+||+++| ..+.+||||+|++.+... ..+||+++++++||.|+|.|.|.+..+.. ..|+|+|||.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~---~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 90 (123)
T cd08390 14 EQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER---RSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV 90 (123)
T ss_pred CEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC---CceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence 556666 6999999999 688999999999976332 47899999999999999999999776543 4799999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
+.. +++++||++.++|.++........|++|+
T Consensus 91 ~~~-----------~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 91 DRF-----------SRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred CcC-----------CCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 875 68899999999999999888888999985
No 97
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.61 E-value=3.8e-15 Score=133.91 Aligned_cols=105 Identities=22% Similarity=0.339 Sum_probs=87.9
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC---ceeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e---~~q~L~~~V~D~ 122 (587)
..+.+. ++|+||+.+|..+++||||+|++.+..+ ...||+++++++||.|+|+|.|..... ....|+|+|||+
T Consensus 16 ~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~---~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~ 92 (125)
T cd08386 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK---HKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDY 92 (125)
T ss_pred CEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC---cceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeC
Confidence 456666 6899999999999999999999965333 478999999999999999999874322 235799999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
|.. +++++||++.++|+++........|++|.
T Consensus 93 d~~-----------~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 93 DRF-----------SRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCC-----------cCCcEeeEEEEecccccCCCCcceEEecC
Confidence 975 78999999999999998777778899884
No 98
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.60 E-value=5.9e-15 Score=133.06 Aligned_cols=114 Identities=16% Similarity=0.206 Sum_probs=88.4
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
-+.+.+++|++|+..|.+|.+|||+++.+.+ + .+||+++++++||+||| |.|... +....|.|+|||++.
T Consensus 4 ~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~---~---~~kT~v~~~t~nP~Wne~f~f~~~---~~~~~l~i~V~d~~~ 74 (126)
T cd04046 4 VTQVHVHSAEGLSKQDSGGGADPYVIIKCEG---E---SVRSPVQKDTLSPEFDTQAIFYRK---KPRSPIKIQVWNSNL 74 (126)
T ss_pred EEEEEEEeCcCCCCCCCCCCcCccEEEEECC---E---EEEeCccCCCCCCcccceEEEEec---CCCCEEEEEEEECCC
Confidence 3567899999999999999999999998743 2 58999999999999999 656543 346789999999988
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+ +++||++++++.++. .....+++|.-.. ++.+.+. .|+|.|+
T Consensus 75 ~~-d~~lG~~~~~l~~~~--~~~~~~~~l~~~~--~~~~~~~-~G~i~~~ 118 (126)
T cd04046 75 LC-DEFLGQATLSADPND--SQTLRTLPLRKRG--RDAAGEV-PGTISVK 118 (126)
T ss_pred CC-CCceEEEEEecccCC--CcCceEEEcccCC--CCCCCCC-CCEEEEE
Confidence 64 799999999999864 3344566665222 2223333 9999984
No 99
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.60 E-value=2.9e-15 Score=131.94 Aligned_cols=102 Identities=20% Similarity=0.308 Sum_probs=82.2
Q ss_pred ccceeeeccccCCcCCCC-CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-CCCCCcEEEEEEec
Q 007848 202 TTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GSKDSPLIIECFNF 278 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~-g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-~~~~~~L~i~V~D~ 278 (587)
.+.+.+++|++|+..|.. +.+||||++++... + ..++||+++++++||+||+ |.+....- ......|.|+|||+
T Consensus 2 ~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~--~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~ 78 (111)
T cd04041 2 VLVVTIHRATDLPKADFGTGSSDPYVTASFAKF-G--KPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDS 78 (111)
T ss_pred EEEEEEEEeeCCCcccCCCCCCCccEEEEEccC-C--CccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeC
Confidence 467889999999999988 99999999998542 3 3468999999999999998 66654321 11357899999999
Q ss_pred cCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 279 NSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
+..+++++||++.+++.+|.+ ...|+++
T Consensus 79 d~~~~dd~lG~~~i~l~~l~~---~~~~~~~ 106 (111)
T cd04041 79 DRFTADDRLGRVEIDLKELIE---DRNWMGR 106 (111)
T ss_pred CCCCCCCcceEEEEEHHHHhc---CCCCCcc
Confidence 999999999999999999963 3445443
No 100
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.60 E-value=4.7e-15 Score=133.65 Aligned_cols=109 Identities=20% Similarity=0.261 Sum_probs=90.8
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
..+.++ ++|+||+.+|..+.+||||+|++.+ .+.+...+||+++++++||.|+|+|.|.+..+. ...|.|.|||.+
T Consensus 16 ~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~ 94 (127)
T cd04030 16 QKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLP-DKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSK 94 (127)
T ss_pred CEEEEEEEEEECCCCccCCCCCCceEEEEEEc-CCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECC
Confidence 567777 5999999999999999999999976 333457899999999999999999999876543 358999999988
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
... .+++++||++.++|.++........|++|.
T Consensus 95 ~~~---------~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 95 SFL---------SREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred ccc---------CCCCceEEEEEEecccccccCCccceEECc
Confidence 530 157899999999999998777777899873
No 101
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.60 E-value=7.2e-15 Score=133.30 Aligned_cols=122 Identities=18% Similarity=0.308 Sum_probs=99.7
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
+|+|.+++++.. +.+.+.+++|++|+..+..+.+||||++.+.+. +....++||++++++.||.||+ |.|.+.. .
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~wne~f~~~~~~-~ 76 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-PKNETKQKTKTIKKTLNPVWNETFTFDLKP-A 76 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-CCCCceecceeecCCCCCCccceEEEeCCc-h
Confidence 588999887644 778899999999999998899999999999653 3234579999999999999998 7776542 2
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeeccc
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~ 313 (587)
+....|.|+|||++..+++++||++.+++.++... ....||+|.+++
T Consensus 77 ~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 77 DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred hcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 23578999999999988999999999999999743 445678887654
No 102
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.60 E-value=5.3e-15 Score=132.68 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=92.5
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV- 264 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l- 264 (587)
.|+|.+++.+.+....+.|.+++|++|+..+..+.+||||++++.+. ..+..++||+++++++||.||+ |.|.....
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~ 79 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-ASKATKLRTKTVHKTRNPEFNETLTYYGITEE 79 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-CCCCCceeeeeecCCCCCCccceEEEcCCCHH
Confidence 48999999998888999999999999999999999999999998652 3344589999999999999998 55531111
Q ss_pred CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 265 GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 265 ~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
...+..|.|+|||++.. ++++||++.+++.+|..
T Consensus 80 ~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~ 113 (123)
T cd04035 80 DIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKP 113 (123)
T ss_pred HhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCC
Confidence 11246899999999988 78999999999999953
No 103
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.60 E-value=4.1e-15 Score=130.79 Aligned_cols=97 Identities=24% Similarity=0.268 Sum_probs=82.6
Q ss_pred EEEeCCCCCCC-CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCce-eeeEEEEeecCc--eeEEEEEEEEcCCCccc
Q 007848 53 FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTW-ITKHIITYQFEV--VQTLVFRIYDVDTQFHN 128 (587)
Q Consensus 53 v~arnL~~~D~-~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w-~e~f~~~~~~e~--~q~L~~~V~D~D~~~~~ 128 (587)
++|++|+++|. .+.+||||+|++.+ ..+||+++++++||.| +|.|.|.+..+. .+.|+|+|||+|..
T Consensus 6 ~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~--- 76 (110)
T cd08688 6 VAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY--- 76 (110)
T ss_pred EEEECCCccccCCCCCCceEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC---
Confidence 68999999995 78999999999953 5899999999999999 999999887653 36899999999975
Q ss_pred cccccccccccccccceeeecchhhcc---CCeeEEEEccc
Q 007848 129 VDVKTLKLVEQQFLGEATCTLSQIVTR---KNRSLTLDLVR 166 (587)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~i~L~~l~~~---~~~~l~~~L~~ 166 (587)
+++++||++.++|.++... .....|++|.+
T Consensus 77 --------~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 --------SANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred --------CCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 7899999999999999873 23446888854
No 104
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.60 E-value=1.4e-14 Score=132.07 Aligned_cols=117 Identities=21% Similarity=0.389 Sum_probs=88.6
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCce--------eeEeeeeeecCCCCCce-eeeEEEEeecCceeEEEEEEEEcC
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGAL--------VEVGRTEVVLNSLNPTW-ITKHIITYQFEVVQTLVFRIYDVD 123 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~--------~~~~rTevi~~tlNP~w-~e~f~~~~~~e~~q~L~~~V~D~D 123 (587)
++|+||+ +|.+|++||||++++.+ .+++ .+..||+++++++||+| +|.|.|.+. ..+.|.|+|||++
T Consensus 8 ~~A~~L~-~~~fg~~DPyvki~~~~-~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~--~~~~L~v~V~D~~ 83 (137)
T cd08691 8 LQARNLK-KGMFFNPDPYVKISIQP-GKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL--PTDVLEIEVKDKF 83 (137)
T ss_pred EEeCCCC-CccCCCCCceEEEEEEC-CCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC--CCCEEEEEEEecC
Confidence 7899998 88899999999999975 2222 25899999999999999 999998875 3468999999987
Q ss_pred CCccccccccccccccccccceeeecchhhccCC---eeEEEEccccccccccccccCCCCCCCCcccEEEeec
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN---RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~---~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
... ....+++||++.++|.++..... ...|++|.. +.. ....+|+|.+..
T Consensus 84 ~~~--------~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k-----------~~~--~s~v~G~~~l~~ 136 (137)
T cd08691 84 AKS--------RPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGR-----------RTP--TDHVSGQLTFRF 136 (137)
T ss_pred CCC--------CccCCceEEEEEEEHHHhcccccCCceEEEEECCc-----------CCC--CCcEEEEEEEEe
Confidence 530 11137999999999999975532 346788854 111 235578887764
No 105
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.60 E-value=1.8e-15 Score=138.37 Aligned_cols=109 Identities=16% Similarity=0.238 Sum_probs=92.3
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG 265 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~ 265 (587)
.|+|.+++.+.+..+.+.+.+++|+||+..+ .+.+||||++++... ++....+||+++++++||+||| |.|.+..-.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHH
Confidence 4899999999999999999999999999999 888999999999763 4445578999999999999999 766653211
Q ss_pred CCCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 266 SKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 266 ~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
-.+..|.|+|||++..+++++||++.++....
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~ 110 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMY 110 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCccc
Confidence 12478999999999999999999999996554
No 106
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.60 E-value=4.3e-15 Score=134.24 Aligned_cols=106 Identities=20% Similarity=0.234 Sum_probs=86.8
Q ss_pred cEEEEE-EEEeCCCCCCCC-CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~-gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~ 122 (587)
.++.++ ++|+||+++|.. |.+||||+|++.+..++ ....||+++++++||+|||+|.|.+..+. ...|.|.|||.
T Consensus 15 ~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~-~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~ 93 (128)
T cd08392 15 SCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSH-NSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHS 93 (128)
T ss_pred CEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcc-cceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeC
Confidence 566666 689999999975 99999999999874322 34779999999999999999999876543 24899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccC---CeeEEEEc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK---NRSLTLDL 164 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~---~~~l~~~L 164 (587)
+.. +++++||++.++|+++.... ....|++|
T Consensus 94 ~~~-----------~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 94 RTL-----------KRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred CCC-----------cCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 965 78999999999999996543 34478887
No 107
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.60 E-value=1.7e-14 Score=129.88 Aligned_cols=104 Identities=17% Similarity=0.238 Sum_probs=85.8
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
+.++ ++|++|+.+|..+++||||+|+.... ....+||+++++++||.|+|+|.|.+..+..+.|.|+|||+|..
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~---~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~-- 77 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTNG---KRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFV-- 77 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECCC---CeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCC--
Confidence 3444 68999999999999999999987531 23589999999999999999999998776667999999999965
Q ss_pred ccccccccccccccccceeeecchhhccC---CeeEEEEccc
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRK---NRSLTLDLVR 166 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~---~~~l~~~L~~ 166 (587)
+++++||++.++|+++.... ....|++|..
T Consensus 78 ---------~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 78 ---------GKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred ---------CCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 68999999999999875432 3457988843
No 108
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.59 E-value=7e-15 Score=131.62 Aligned_cols=107 Identities=22% Similarity=0.282 Sum_probs=87.4
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|+||+.+ ++||||+|++.. +..||+++++++||.|+|.|.|.+.....+.|.|.|||.|..
T Consensus 7 i~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~------- 69 (121)
T cd08378 7 VKARGLPAN----SNDPVVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA------- 69 (121)
T ss_pred EEecCCCcc----cCCCEEEEEECC------ccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-------
Confidence 789999988 799999999964 488999999999999999999987655667999999999853
Q ss_pred cccccccccccceeeecchhhccC-----CeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRK-----NRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~-----~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
++++||++.++|+++.... ....|++|.. .. ..+.+|+|.+++.
T Consensus 70 -----~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~-----------~~---~~~~~G~i~l~~~ 118 (121)
T cd08378 70 -----KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLED-----------KK---GGRVGGELMLAVW 118 (121)
T ss_pred -----cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccC-----------CC---CCccceEEEEEEE
Confidence 6899999999999986532 2347999975 22 1256799988753
No 109
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.59 E-value=4.9e-15 Score=130.29 Aligned_cols=103 Identities=21% Similarity=0.289 Sum_probs=82.2
Q ss_pred cceeeeccccCCcCC-CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCce-ee-ceEEeeecCCCCCcEEEEEEecc
Q 007848 203 TTELILRCSDLDCKD-LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLIIECFNFN 279 (587)
Q Consensus 203 l~v~vi~a~~L~~~d-~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~W-ne-f~~~~~~l~~~~~~L~i~V~D~d 279 (587)
+.|.+++|++|+.++ ..+.+||||++++.+ .++||+++++++||.| || |.|.+..-...+..|.|+|||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~------~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS------TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC------eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCC
Confidence 457899999999998 478999999999943 4789999999999999 87 66665421112478999999999
Q ss_pred CCCCCceeEEEEEechhhhhc---cCCCceeEeec
Q 007848 280 SNGKHDLIGKVQKSLADLEKL---HSSGQGQNLFL 311 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~~---~~~~~~~~l~~ 311 (587)
..+++++||++.+++.++... .....||+|++
T Consensus 75 ~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 75 TYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 999999999999999999752 12345777654
No 110
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=4.6e-15 Score=133.44 Aligned_cols=89 Identities=22% Similarity=0.392 Sum_probs=76.8
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEE-eecCceeEEEEEEEEcCC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEVVQTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~-~~~e~~q~L~~~V~D~D~ 124 (587)
..++++ ++|++|+ .|..+++||||+|++.+ .+.||+++++++||+|+|+|.|. ..++..+.|+|+|||+|.
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~------~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~ 100 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTSTDGYVKVFFGG------QEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDN 100 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCCCCeEEEEEECC------ccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCC
Confidence 567777 5899998 57889999999999853 38899999999999999999986 344567899999999997
Q ss_pred Cccccccccccccccccccceeeecchhh
Q 007848 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIV 153 (587)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~i~L~~l~ 153 (587)
. +++++||++.++|....
T Consensus 101 ~-----------s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 101 G-----------WDDDLLGTCSVVPEAGV 118 (127)
T ss_pred C-----------CCCCeeEEEEEEecCCc
Confidence 6 78999999999999765
No 111
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.59 E-value=6.9e-15 Score=135.94 Aligned_cols=108 Identities=18% Similarity=0.273 Sum_probs=84.5
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeee------------cCC-CC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ------------VGS-KD 268 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~------------l~~-~~ 268 (587)
+.|.+++|++|+. ..|.+||||++++... ......+||+++++++||+||| |.|.+.. .++ ..
T Consensus 2 L~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~-~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 2 LSVRVIECSDLAL--KNGTCDPYASVTLIYS-NKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred EEEEEEeCcCCCC--CCCCCCceEEEEEeCC-cccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 6788999999998 5689999999999763 2223478999999999999999 7777631 111 23
Q ss_pred CcEEEEEEeccCCCCCceeEEEEEechhhhhc-cCCCceeEeeccc
Q 007848 269 SPLIIECFNFNSNGKHDLIGKVQKSLADLEKL-HSSGQGQNLFLST 313 (587)
Q Consensus 269 ~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~-~~~~~~~~l~~~~ 313 (587)
..|.|+|||++..++++|||++.+++.++... .....||.|...+
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~ 124 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPRE 124 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcc
Confidence 67999999999888999999999999999753 2345677775443
No 112
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.59 E-value=5.4e-15 Score=133.41 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=92.1
Q ss_pred EEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCC-CCceee-ceEEeeecCC
Q 007848 189 KLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNET-KPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 189 ~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tl-nP~Wne-f~~~~~~l~~ 266 (587)
+|.+++.|.+..+.+.|.+++|+||++++..+.+||||++++... ++...+.||+++++|+ ||+||| |.|.+.. .+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~-~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~-~~ 79 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFST-GGLLYKKKTRLVKSSNGQVKWGETMIFPVTQ-QE 79 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEEC-CCcceeecCccEECCCCCceecceEEEeCCc-hh
Confidence 688999999999999999999999999866667799999999874 6667789999999995 699999 6666543 23
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
.+..|.|+|||++..+++++||.+.++.++.
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 4678999999999999999999999999874
No 113
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=1.2e-14 Score=128.65 Aligned_cols=98 Identities=30% Similarity=0.434 Sum_probs=87.6
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|+..+..+++||||+|++.+ . ..++|+++.+++||.|+++|.|.+.....+.|.|+|||.+..
T Consensus 6 i~a~~L~~~~~~~~~dpyv~v~~~~---~--~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~------- 73 (115)
T cd04040 6 ISAENLPSADRNGKSDPFVKFYLNG---E--KVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRG------- 73 (115)
T ss_pred EeeeCCCCCCCCCCCCCeEEEEECC---C--cceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCC-------
Confidence 7999999999999999999999853 2 478999999999999999999998766678999999999975
Q ss_pred cccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+++++||++.+++.++........|++|..
T Consensus 74 ----~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~ 103 (115)
T cd04040 74 ----GKDDLLGSAYIDLSDLEPEETTELTLPLDG 103 (115)
T ss_pred ----CCCCceEEEEEEHHHcCCCCcEEEEEECcC
Confidence 689999999999999988777889999965
No 114
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.59 E-value=9.5e-15 Score=130.87 Aligned_cols=117 Identities=25% Similarity=0.436 Sum_probs=93.7
Q ss_pred EEEE-EEEeCCCCCCC-CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 49 IELS-FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 49 ieL~-v~arnL~~~D~-~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
++++ ++|++|+..+. .+.+||||++.+... ...+||+++++++||.|+|.|.|.+. +..+.|+|+|||.+..
T Consensus 4 l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~-~~~~~l~~~v~d~~~~- 77 (124)
T cd04044 4 LAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN-SLTEPLNLTVYDFNDK- 77 (124)
T ss_pred EEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC-CCCCEEEEEEEecCCC-
Confidence 5565 68999998774 467999999999642 25899999999999999999999877 5578999999999875
Q ss_pred cccccccccccccccccceeeecchhhccCCee-EEEEccccccccccccccCCCCCCCCcccEEEeeccee
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRS-LTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 197 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~-l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~ 197 (587)
+++++||++.++|.++....... .+..|.. ..+..|+|++.+.+.
T Consensus 78 ----------~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~----------------~~k~~G~i~~~l~~~ 123 (124)
T cd04044 78 ----------RKDKLIGTAEFDLSSLLQNPEQENLTKNLLR----------------NGKPVGELNYDLRFF 123 (124)
T ss_pred ----------CCCceeEEEEEEHHHhccCccccCcchhhhc----------------CCccceEEEEEEEeC
Confidence 68999999999999998766553 3444432 125679999988764
No 115
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.59 E-value=7.9e-15 Score=128.53 Aligned_cols=92 Identities=15% Similarity=0.225 Sum_probs=77.0
Q ss_pred EEEE-EEEeCCCCCCCC----CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC-ceeEEEEEEEEc
Q 007848 49 IELS-FSAADLRDRDVL----SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDV 122 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~----gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e-~~q~L~~~V~D~ 122 (587)
++++ ++|++|++.|.. +.+||||+|++.. ...||+++++++||+|+|.|.|.+... ....|.|+|||+
T Consensus 3 l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~ 76 (108)
T cd04039 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDK 76 (108)
T ss_pred EEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEEC
Confidence 5666 689999998753 3589999999843 477999999999999999999987543 335899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCC
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN 157 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~ 157 (587)
|.. +++++||++.++|.+|.....
T Consensus 77 d~~-----------~~dd~IG~~~l~L~~l~~~~~ 100 (108)
T cd04039 77 DKF-----------SFNDYVATGSLSVQELLNAAP 100 (108)
T ss_pred CCC-----------CCCcceEEEEEEHHHHHhhCC
Confidence 976 789999999999999986543
No 116
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.59 E-value=4.8e-15 Score=132.22 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=85.4
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce-eEEEEEEEEcCC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV-QTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~-q~L~~~V~D~D~ 124 (587)
.+++++ ++|+||+++| .+.+||||+|++.+.. ......||+++++++||.|+|+|.|.+..+.. ..|.|.|||.|.
T Consensus 12 ~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~-~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~ 89 (119)
T cd08685 12 RKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDK-EVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS 89 (119)
T ss_pred CEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCC-CCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence 557776 6899999999 8899999999998732 22357799999999999999999998754332 368899999986
Q ss_pred CccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
.. .++++||++.++|.++..+.....|+.|
T Consensus 90 ~~----------~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 90 KS----------RDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred Cc----------CCCEEEEEEEecHHHhccCccccceEeC
Confidence 51 2578999999999999865555678765
No 117
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.59 E-value=1.2e-14 Score=130.04 Aligned_cols=115 Identities=14% Similarity=0.224 Sum_probs=89.6
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+.+|..|.+||||++.+. + ..++||+++++++||.||+ |.+.+. .....|.|+|||++..
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~--~~~~kT~v~~~t~nP~Wne~f~~~~~---~~~~~l~v~v~d~~~~ 73 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---N--EVIIRTATVWKTLNPFWGEEYTVHLP---PGFHTVSFYVLDEDTL 73 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC---C--EeeeeeeeEcCCCCCcccceEEEeeC---CCCCEEEEEEEECCCC
Confidence 57889999999999999999999999883 2 2367999999999999998 777654 2357999999999999
Q ss_pred CCCceeEEEEEechhhhhcc-CCCceeEeecccccCCCCcccccccEEEe
Q 007848 282 GKHDLIGKVQKSLADLEKLH-SSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~-~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
+++++||++.++++++.... ....|++|..... ..+ ..|+|++.
T Consensus 74 ~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~----~~~-~~G~i~l~ 118 (121)
T cd04054 74 SRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDP----DEE-VQGEIHLE 118 (121)
T ss_pred CCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCC----CCc-cccEEEEE
Confidence 99999999999999986321 1335666643221 111 38999874
No 118
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.59 E-value=6.8e-15 Score=128.92 Aligned_cols=91 Identities=16% Similarity=0.174 Sum_probs=75.8
Q ss_pred ccceeeeccccCCcCCCC----CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEE
Q 007848 202 TTTELILRCSDLDCKDLF----SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECF 276 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~----g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~ 276 (587)
-+.+.+++|++|+..|.. +.+||||++++.. .++||+++++++||+||| |.|++... +.+..|.|+||
T Consensus 2 ~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~------~~~kT~v~~~t~nPvWne~f~f~v~~~-~~~~~L~~~V~ 74 (108)
T cd04039 2 VVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGR------RVFRTSWRRHTLNPVFNERLAFEVYPH-EKNFDIQFKVL 74 (108)
T ss_pred EEEEEEEeeeCCCCccccCCCCCccCceEEEEECC------EeEeeeeecCCCCCcccceEEEEEeCc-cCCCEEEEEEE
Confidence 366889999999998753 3589999999832 367999999999999999 66665432 23568999999
Q ss_pred eccCCCCCceeEEEEEechhhhh
Q 007848 277 NFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 277 D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
|++..++|++||++.++|.+|..
T Consensus 75 D~d~~~~dd~IG~~~l~L~~l~~ 97 (108)
T cd04039 75 DKDKFSFNDYVATGSLSVQELLN 97 (108)
T ss_pred ECCCCCCCcceEEEEEEHHHHHh
Confidence 99999999999999999999975
No 119
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=1.6e-14 Score=131.71 Aligned_cols=120 Identities=20% Similarity=0.297 Sum_probs=86.2
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCce--------eeEEecceecCCCCCce-ee-ceEEeeecCCCCCcEE
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTH--------IPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLI 272 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~--------~~~~kT~vik~tlnP~W-ne-f~~~~~~l~~~~~~L~ 272 (587)
+.+.+++|+||+ ++.+|++|||+++++.. ++++ ...+||+++++++||+| || |.|.+. .+..|.
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~-~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~----~~~~L~ 76 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQP-GKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL----PTDVLE 76 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEEC-CCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC----CCCEEE
Confidence 456789999998 78899999999999964 2333 24799999999999999 77 665553 256899
Q ss_pred EEEEeccCCCC---CceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 273 IECFNFNSNGK---HDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 273 i~V~D~d~~~~---dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
|+|||++..++ +++||++.+++.++................|++ ....++|+|.++
T Consensus 77 v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~--~~s~v~G~~~l~ 135 (137)
T cd08691 77 IEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRT--PTDHVSGQLTFR 135 (137)
T ss_pred EEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCC--CCCcEEEEEEEE
Confidence 99999876544 699999999999997533222222222223322 122348888874
No 120
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.58 E-value=2.1e-14 Score=131.05 Aligned_cols=117 Identities=22% Similarity=0.304 Sum_probs=90.6
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEee-c--------CceeEEEEE
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-F--------EVVQTLVFR 118 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~-~--------e~~q~L~~~ 118 (587)
+.++ ++|++|+++|..|++||||+|++.. ...||+++++|+||.|+|.|.|... . +..+.|.|+
T Consensus 3 l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 3 LRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 4454 6899999999999999999999853 4889999999999999999988632 1 123579999
Q ss_pred EEEcCCCccccccccccccccccccceee-ecchhhc---cCCeeEEEEccccccccccccccCCCCCCCCcccEEEeec
Q 007848 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATC-TLSQIVT---RKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 119 V~D~D~~~~~~~~~~~~l~~~d~LG~~~i-~L~~l~~---~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
|||+|.. +++++||++.+ ++..+.. ......|++|.. .....|+|.++.
T Consensus 77 V~d~d~~-----------~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~----------------~~~~~Geil~~~ 129 (135)
T cd04017 77 LFDQDSV-----------GKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK----------------GGQSAGELLAAF 129 (135)
T ss_pred EEeCcCC-----------CCCccceEEEeeeeeecccCCCCCCCceEEEeec----------------CCCchhheeEEe
Confidence 9999975 78999999986 4444432 234558999954 124689999988
Q ss_pred ceec
Q 007848 195 EECI 198 (587)
Q Consensus 195 ~~~~ 198 (587)
+.++
T Consensus 130 ~~~~ 133 (135)
T cd04017 130 ELIE 133 (135)
T ss_pred EEEE
Confidence 7653
No 121
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.58 E-value=2.3e-14 Score=129.25 Aligned_cols=120 Identities=18% Similarity=0.270 Sum_probs=93.3
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
..+.+. ++|+||++++ .+||||+|++.+ . ..+||+++ +++||.|+|.|.|.......+.|.|.|||+|..
T Consensus 4 ~~L~V~Vi~A~~L~~~~---~~DPYv~v~l~~---~--~~~kT~v~-~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVKH---VPHPYCVISLNE---V--KVARTKVR-EGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKR 74 (126)
T ss_pred eEEEEEEEEeeCCCCCC---CCCeeEEEEECC---E--eEEEeecC-CCCCCccCCEEEEecCCCCcCEEEEEEEECCCC
Confidence 346665 7999999864 689999999953 1 46799975 689999999999975544446899999999875
Q ss_pred ccccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecceec
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECI 198 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~ 198 (587)
+++++||++.++|.++........|++|.+. ... ..+..|+|++++.+..
T Consensus 75 -----------~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~----------~~~--~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 75 -----------SKDSEIAEVTVQLSKLQNGQETDEWYPLSSA----------SPL--KGGEWGSLRIRARYSH 124 (126)
T ss_pred -----------CCCCeEEEEEEEHhHccCCCcccEeEEcccC----------CCC--CCCcCcEEEEEEEEEc
Confidence 7899999999999999876666789999651 100 1255799999887654
No 122
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.58 E-value=1.7e-14 Score=129.54 Aligned_cols=116 Identities=24% Similarity=0.327 Sum_probs=89.5
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+.++.++.+|||+++++. | ..++||+++++++||.||| |.|++.. ...|.|+|||++..
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~---~--~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVD---G--GQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKF 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEEC---C--ccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCC
Confidence 56789999999999999999999999983 2 2478999999999999997 8888752 67999999999988
Q ss_pred CC--CceeEEEEEechhhhhccCC-CceeEeecccccCCCCcccccccEEEe
Q 007848 282 GK--HDLIGKVQKSLADLEKLHSS-GQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 282 ~~--dd~IG~~~i~l~~l~~~~~~-~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
++ +++||++.+++.+|...... ..++++...++. .++ ...|+|.+.
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~-~~~--~~~G~v~~~ 121 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKS-DNL--SVRGKIVVS 121 (123)
T ss_pred CCCCCceEeEEEEEHHHccccCCCccceeEeecCCCC-CCc--eEeeEEEEE
Confidence 75 57999999999999754433 345555333221 111 137888773
No 123
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.58 E-value=6.6e-15 Score=131.83 Aligned_cols=106 Identities=21% Similarity=0.234 Sum_probs=87.8
Q ss_pred cEEEEE-EEEeCCCCCC-CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRD-VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D-~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~ 122 (587)
..+.++ ++|+||+.+| ..+.+||||+|++.+. +.....+||+++++++||.|+|+|.|.+..+. ...|.|.|||.
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~ 92 (123)
T cd08521 14 GSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPD-KSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHH 92 (123)
T ss_pred CEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecC-CCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeC
Confidence 556776 6899999999 7889999999999762 22235789999999999999999998865433 35899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
|.. +++++||++.++|.++........|++|
T Consensus 93 ~~~-----------~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 93 DRF-----------GRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred CCC-----------cCCceeeEEEEecccccccCCCccEEEC
Confidence 865 6889999999999999766666788876
No 124
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.58 E-value=2.3e-14 Score=129.16 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=90.5
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
..++++ ++|++|++.|..|++||||+++..+ ...||+++++++||.|+|.|.|.... ..+.|+|+|||++..
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~~~~-~~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG------ESVRSPVQKDTLSPEFDTQAIFYRKK-PRSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC------EEEEeCccCCCCCCcccceEEEEecC-CCCEEEEEEEECCCC
Confidence 456676 6899999999999999999998853 47899999999999999999887654 356899999998864
Q ss_pred ccccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
++++||++.+++.++.. ....+++|... . ... +.+..|+|.+...
T Consensus 76 ------------~d~~lG~~~~~l~~~~~--~~~~~~~l~~~------~---~~~--~~~~~G~i~~~~~ 120 (126)
T cd04046 76 ------------CDEFLGQATLSADPNDS--QTLRTLPLRKR------G---RDA--AGEVPGTISVKVT 120 (126)
T ss_pred ------------CCCceEEEEEecccCCC--cCceEEEcccC------C---CCC--CCCCCCEEEEEEE
Confidence 47999999999987643 33456777430 0 111 3467899988653
No 125
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=6.2e-16 Score=153.94 Aligned_cols=222 Identities=17% Similarity=0.226 Sum_probs=168.4
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEee-cCc--eeEEEEEEEEcCCCcccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-FEV--VQTLVFRIYDVDTQFHNV 129 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~-~e~--~q~L~~~V~D~D~~~~~~ 129 (587)
..|++|+++|..+.-|||+++.+.+.-++ ....||++..+++||.|+++...... .+. ...+++.|.|.+..
T Consensus 100 ~~a~~lk~~~~~~~~d~~~~~~llpga~k-l~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn~~~---- 174 (362)
T KOG1013|consen 100 DRAKGLKPMDINGLADPYVKLHLLPGAGK-LNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDNDKK---- 174 (362)
T ss_pred chhcccchhhhhhhcchHHhhhcccchhh-hhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccCccc----
Confidence 57899999999999999999999873222 34689999999999999998765422 111 13678889998865
Q ss_pred ccccccccccccccceeeecchhhccCCee--EEEEccccccccccccccCCCCCCCCcccEEEeecceeccccccceee
Q 007848 130 DVKTLKLVEQQFLGEATCTLSQIVTRKNRS--LTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELI 207 (587)
Q Consensus 130 ~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~--l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~~~l~v~v 207 (587)
...+++|+..+.+..+....... .|+.-.- .++..... ..+.+|++.+++++-.....+++.+
T Consensus 175 -------~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~l-----p~~rad~~---~~E~rg~i~isl~~~s~~~~l~vt~ 239 (362)
T KOG1013|consen 175 -------THNESQGQSRVSLKKLKPLQRKSFNICLEKSL-----PSERADRD---EDEERGAILISLAYSSTTPGLIVTI 239 (362)
T ss_pred -------ccccCcccchhhhhccChhhcchhhhhhhccC-----Cccccccc---chhhccceeeeeccCcCCCceEEEE
Confidence 67899999999988887654322 1211100 01111111 2367899999999988899999999
Q ss_pred eccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ce--EEeeecCCCCCcEEEEEEeccCCCCC
Q 007848 208 LRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNGKH 284 (587)
Q Consensus 208 i~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~--~~~~~l~~~~~~L~i~V~D~d~~~~d 284 (587)
++|..|..+|.+|.+|||+..++..+. .....+||.+.|+++||.|++ |. +....| ....+.|.|||++..+..
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~pdv-~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd~~~G~s~ 316 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSPDV-GKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGDYDIGKSN 316 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCCCc-chhhcccCcchhccCCccccccccccCCccch--hcceEEEeecccCCCcCc
Confidence 999999999999999999999997543 345589999999999999997 44 333333 257899999999998788
Q ss_pred ceeEEEEEechhh
Q 007848 285 DLIGKVQKSLADL 297 (587)
Q Consensus 285 d~IG~~~i~l~~l 297 (587)
+++|-+...+...
T Consensus 317 d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 317 DSIGGSMLGGYRR 329 (362)
T ss_pred cCCCccccccccc
Confidence 9999887766544
No 126
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.57 E-value=1.6e-14 Score=130.41 Aligned_cols=113 Identities=12% Similarity=0.253 Sum_probs=86.6
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+.+.+++|++|+.+|.+|.+||||++++.. ..++|+++++++||.||| |.|... .....|.|+|||++.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~------~~~kT~~v~~t~~P~Wne~f~f~~~---~~~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK------TKKRTKTIPQNLNPVWNEKFHFECH---NSSDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC------EeeecceecCCCCCccceEEEEEec---CCCCEEEEEEEECCC
Confidence 3667899999999999999999999999832 268999999999999998 766653 225689999999985
Q ss_pred C-----------CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 N-----------GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~-----------~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
. +++++||++.+++.++. .....|+.|. ++. ++. .++|+|.|.
T Consensus 73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~-~~~--~~~--~~~G~i~~~ 126 (127)
T cd04027 73 DIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLE-KRT--DKS--AVSGAIRLH 126 (127)
T ss_pred CcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECc-cCC--CCC--cEeEEEEEE
Confidence 3 57899999999999984 3334555553 221 111 138999873
No 127
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.57 E-value=6.2e-15 Score=133.93 Aligned_cols=122 Identities=19% Similarity=0.280 Sum_probs=100.7
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS 266 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~ 266 (587)
|+|.+.+.+.+..+.+.+.+++|+||+..+..+.+||||++++... +.+...++|++++++.||.||+ |.|.+....-
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~-~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQG-GKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcC-CeEeeeecCcceecCCCCeeeeeEEEECCHHHh
Confidence 7899999998888999999999999999998999999999999763 4556688999999999999998 6666542111
Q ss_pred CCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 267 KDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 267 ~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
....|.|+|||++..+++++||.+.+++.+ ...+...|++|+..
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~ 123 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLAS 123 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhC
Confidence 257899999999998889999999999999 23444556777654
No 128
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.56 E-value=3.9e-14 Score=132.73 Aligned_cols=118 Identities=26% Similarity=0.380 Sum_probs=92.5
Q ss_pred EEEE-EEEeCCCCCCC------------------------------CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCC
Q 007848 49 IELS-FSAADLRDRDV------------------------------LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNP 97 (587)
Q Consensus 49 ieL~-v~arnL~~~D~------------------------------~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP 97 (587)
++++ ++|++|+++|. .|++||||+|++.+ . .++||+++++++||
T Consensus 9 L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~---~--~~~rT~v~~~~~nP 83 (158)
T cd04015 9 LDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG---A--RVARTRVIENSENP 83 (158)
T ss_pred eEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC---e--EeeEEEEeCCCCCC
Confidence 5666 68999999983 57799999999954 1 46899999999999
Q ss_pred ceeeeEEEEeecCceeEEEEEEEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEcccccccccccccc
Q 007848 98 TWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEE 177 (587)
Q Consensus 98 ~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~ 177 (587)
.|||.|.|.+. +..+.|.|.|||+|.. .+++||++.++++++........|++|.+
T Consensus 84 ~WnE~F~~~~~-~~~~~l~~~V~d~d~~------------~~~~IG~~~i~l~~l~~g~~~~~w~~L~~----------- 139 (158)
T cd04015 84 VWNESFHIYCA-HYASHVEFTVKDNDVV------------GAQLIGRAYIPVEDLLSGEPVEGWLPILD----------- 139 (158)
T ss_pred ccceEEEEEcc-CCCCEEEEEEEeCCCc------------CCcEEEEEEEEhHHccCCCCcceEEECcC-----------
Confidence 99999998765 3457899999999864 35899999999999987766778999965
Q ss_pred CCCCCCCCcccEEEeecce
Q 007848 178 SNPSNRPKHCGKLTVHAEE 196 (587)
Q Consensus 178 ~~~~~~~~~~G~I~l~~~~ 196 (587)
..+ ...+..|.|++++.+
T Consensus 140 ~~~-~~~~~~~~l~v~~~f 157 (158)
T cd04015 140 SNG-KPPKPGAKIRVSLQF 157 (158)
T ss_pred CCC-CCCCCCCEEEEEEEE
Confidence 111 011345788887653
No 129
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.56 E-value=2.4e-14 Score=127.67 Aligned_cols=109 Identities=21% Similarity=0.337 Sum_probs=86.7
Q ss_pred cceeeeccccCCcCCC------CCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEE
Q 007848 203 TTELILRCSDLDCKDL------FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIEC 275 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~------~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V 275 (587)
+.+.+++|++|+.+|. .|.+||||++++.+ .++||+++++++||.|++ |.+.+.. .....|.|+|
T Consensus 3 l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~------~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v 74 (121)
T cd08391 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA------QTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIEL 74 (121)
T ss_pred EEEEEEEccCCcccccccccCCCCCcCCEEEEEECC------EeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEE
Confidence 5678999999999885 36899999999843 378999999999999998 7776652 3367999999
Q ss_pred EeccCCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 276 FNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 276 ~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
||++.. ++++||.+.+++.++........|++|... . +|.|++.
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~---------~-~G~~~~~ 118 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV---------K-SGRLHLK 118 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC---------C-CceEEEE
Confidence 999987 889999999999999753333456665432 1 7998874
No 130
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=3.7e-14 Score=127.98 Aligned_cols=110 Identities=23% Similarity=0.267 Sum_probs=85.7
Q ss_pred eeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCC
Q 007848 206 LILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH 284 (587)
Q Consensus 206 ~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~d 284 (587)
++++|++|+. .+|.+||||++++.. ..+||++++++.||+||+ |.|++.........|.|+|||++..+++
T Consensus 1 ~vi~a~~L~~--~~g~~Dpyv~v~~~~------~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d 72 (127)
T cd08373 1 LVVSLKNLPG--LKGKGDRIAKVTFRG------VKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRN 72 (127)
T ss_pred CeEEeeCCcc--cCCCCCCEEEEEECC------EeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCC
Confidence 4789999998 789999999999843 258999999999999998 8887753323468999999999999999
Q ss_pred ceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEE
Q 007848 285 DLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 285 d~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
++||++.+++.++........+++|.+++. +. ..|.|++
T Consensus 73 ~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~--~~----~~~~l~l 111 (127)
T cd08373 73 RLIGSATVSLQDLVSEGLLEVTEPLLDSNG--RP----TGATISL 111 (127)
T ss_pred ceEEEEEEEhhHcccCCceEEEEeCcCCCC--Cc----ccEEEEE
Confidence 999999999999975333334566654432 11 2677776
No 131
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.54 E-value=2.2e-14 Score=134.93 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=89.5
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEee-cCc--eeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQ-FEV--VQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~-~e~--~q~L~~~V~D~ 122 (587)
.++.++ ++|+||+.+|..+.+||||+|++.+. +....+.||+++++|+||.|+|+|.|... .+. ...|+|.|||+
T Consensus 27 g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~-~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~ 105 (162)
T cd04020 27 GELHVWVKEAKNLPALKSGGTSDSFVKCYLLPD-KSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDH 105 (162)
T ss_pred ceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcC-CCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeC
Confidence 567776 68999999999999999999999752 22336899999999999999999998742 222 24799999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
|.. +++++||++.++++++........|++|..
T Consensus 106 d~~-----------~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~ 138 (162)
T cd04020 106 DKL-----------SSNDFLGGVRLGLGTGKSYGQAVDWMDSTG 138 (162)
T ss_pred CCC-----------CCCceEEEEEEeCCccccCCCccccccCCh
Confidence 975 789999999999999987777778888854
No 132
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.54 E-value=2.3e-14 Score=128.81 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=88.3
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEE-eecCc--eeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEV--VQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~-~~~e~--~q~L~~~V~D~ 122 (587)
.++.++ ++|+||+++|..+.+||||++.+.+... ...||+++++ +||+|||+|.|. +..+. ...|+|.|||+
T Consensus 16 ~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~---~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~ 91 (124)
T cd08389 16 RKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK---QRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV 91 (124)
T ss_pred CEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc---ceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence 567776 6899999999999999999998876332 4789999988 999999999997 55433 35899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
|.. +++++||++.++|+++........|++|.
T Consensus 92 ~~~-----------~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 92 ERM-----------RKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CCc-----------ccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 975 78999999999999998777788999985
No 133
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.54 E-value=2.8e-14 Score=124.38 Aligned_cols=94 Identities=18% Similarity=0.192 Sum_probs=82.6
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|+..|..+.+||||+|++.+ ...||+++++++||.|+|.|.|.+..+..+.|.|+|||.+
T Consensus 7 ~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~--------- 71 (105)
T cd04050 7 DSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDK--------- 71 (105)
T ss_pred eeecCCCCcccCCCCCcEEEEEECC------EEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECC---------
Confidence 6899999999999999999999964 5889999999999999999999988766789999999987
Q ss_pred cccccccccccceeeecchhhccC--CeeEEEEccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRK--NRSLTLDLVR 166 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~--~~~l~~~L~~ 166 (587)
. +++||++.++|.++...+ ....|++|.+
T Consensus 72 ----~-~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 72 ----T-GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred ----C-CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 2 689999999999998665 3457999965
No 134
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.54 E-value=6.2e-14 Score=130.00 Aligned_cols=107 Identities=18% Similarity=0.222 Sum_probs=85.8
Q ss_pred EEEE-EEEeC--CCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--------eeEEEE
Q 007848 49 IELS-FSAAD--LRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--------VQTLVF 117 (587)
Q Consensus 49 ieL~-v~arn--L~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--------~q~L~~ 117 (587)
.||+ +.|++ |+..+..+.+||||++++.-. +......||.++++|+||+|||+|.|.+.... .+.|+|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p-~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYP-NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecC-CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEE
Confidence 5666 46777 778888889999999997431 11236999999999999999999999875442 357999
Q ss_pred EEEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 118 RIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 118 ~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+|||.+.. +.+|++||++.++|+.+........|++|..
T Consensus 83 ~V~d~~~f----------~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 83 EVYHKGGF----------LRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEEeCCCc----------ccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 99999974 1479999999999999987766677999864
No 135
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.54 E-value=2.5e-14 Score=130.07 Aligned_cols=105 Identities=19% Similarity=0.297 Sum_probs=85.2
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
..+.++ ++|+||+++|..|.+||||+|++.+ ++.+....||+++++++||.|+|+|.|.+..+. ...|.|+|||+|
T Consensus 13 ~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d 91 (133)
T cd08384 13 RGLIVGIIRCVNLAAMDANGYSDPFVKLYLKP-DAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKD 91 (133)
T ss_pred CEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEc-CCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCC
Confidence 556776 6899999999999999999999986 333446889999999999999999999877543 358999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLV 165 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~ 165 (587)
.. +++++||++.+++... ......|+++.
T Consensus 92 ~~-----------~~~~~lG~~~i~l~~~--~~~~~~W~~~l 120 (133)
T cd08384 92 IG-----------KSNDYIGGLQLGINAK--GERLRHWLDCL 120 (133)
T ss_pred CC-----------CCccEEEEEEEecCCC--CchHHHHHHHH
Confidence 75 6889999999999752 22344576664
No 136
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.53 E-value=4.4e-14 Score=127.03 Aligned_cols=102 Identities=23% Similarity=0.383 Sum_probs=85.4
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeec-CCCCCceeeeEEEEeecCc----eeEEEEEEEEc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVL-NSLNPTWITKHIITYQFEV----VQTLVFRIYDV 122 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~-~tlNP~w~e~f~~~~~~e~----~q~L~~~V~D~ 122 (587)
++++ ++|++|+..+..+++||||+|++... ...+|+++. ++.||.|+|.|.|.+..+. ...|+|+|||+
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~-----~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDPS-----HKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECCC-----cccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 4555 68999999999999999999999641 377999975 5899999999999887653 57999999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCC-----eeEEEEccc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKN-----RSLTLDLVR 166 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~-----~~l~~~L~~ 166 (587)
+.. +++++||++.++|.++..... ...|++|..
T Consensus 77 ~~~-----------~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~ 114 (125)
T cd04051 77 RPS-----------LGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRR 114 (125)
T ss_pred CCC-----------CCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeEC
Confidence 865 679999999999999986554 357899865
No 137
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.53 E-value=9.9e-14 Score=124.89 Aligned_cols=102 Identities=29% Similarity=0.442 Sum_probs=84.2
Q ss_pred cEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 47 ~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
+.++++|.+.+|...+..+++||||+|++.+ + ..+||+++++++||.|++.|.|.+. ..+.|.|+|||++..
T Consensus 2 ~~L~V~i~~a~l~~~~~~~~~dPyv~v~~~~---~--~~~kT~v~~~t~~P~Wne~f~~~~~--~~~~l~~~V~d~~~~- 73 (125)
T cd04021 2 SQLQITVESAKLKSNSKSFKPDPYVEVTVDG---Q--PPKKTEVSKKTSNPKWNEHFTVLVT--PQSTLEFKVWSHHTL- 73 (125)
T ss_pred ceEEEEEEeeECCCCCcCCCCCeEEEEEECC---c--ccEEeeeeCCCCCCccccEEEEEeC--CCCEEEEEEEeCCCC-
Confidence 5688887766688888789999999999853 2 4899999999999999999998864 457999999999975
Q ss_pred cccccccccccccccccceeeecchhhccCCe-----eEEEEccc
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR-----SLTLDLVR 166 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~-----~l~~~L~~ 166 (587)
+++++||++.++|+++...++. ..|++|..
T Consensus 74 ----------~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~ 108 (125)
T cd04021 74 ----------KADVLLGEASLDLSDILKNHNGKLENVKLTLNLSS 108 (125)
T ss_pred ----------CCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEc
Confidence 7899999999999999865442 34677754
No 138
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.52 E-value=4.5e-14 Score=126.37 Aligned_cols=108 Identities=16% Similarity=0.261 Sum_probs=84.5
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+.+ .+||||++++.. .+.||+++++++||+||| |.|....+ ....|.|+|||++..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~------~~~kT~v~~~t~nP~Wne~F~f~~~~~--~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN------YKGSTKAIERTSNPEWNQVFAFSKDRL--QGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC------ccccccccCCCCCCccceEEEEEcCCC--cCCEEEEEEEeCCCC
Confidence 56889999999987 789999999843 267999999999999998 77776532 367899999999986
Q ss_pred CCCceeEEEEEechhhhhcc-----CCCceeEeecccccCCCCcccccccEEE
Q 007848 282 GKHDLIGKVQKSLADLEKLH-----SSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~-----~~~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
++++||++.+++.++.... ....||.|...+. .+ .+|+|.|
T Consensus 70 -~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~-----~~-~~G~i~l 115 (121)
T cd08378 70 -KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKG-----GR-VGGELML 115 (121)
T ss_pred -cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCC-----Cc-cceEEEE
Confidence 7899999999999996321 1235777654321 12 2899988
No 139
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=7.9e-14 Score=124.62 Aligned_cols=102 Identities=20% Similarity=0.361 Sum_probs=85.5
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+..+.++.+|||+++++. + ..+++|++++++.||.||+ |.|++. .....|.|+|||++..
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~--~~~~kT~~~~~t~~P~Wne~f~~~v~---~~~~~L~v~v~d~~~~ 74 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVN---G--IVKGRTVTISNTLNPVWDEVLYVPVT---SPNQKITLEVMDYEKV 74 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEEC---C--EEeeceeEECCCcCCccCceEEEEec---CCCCEEEEEEEECCCC
Confidence 56779999999999999999999999983 2 2578999999999999998 666654 2357999999999999
Q ss_pred CCCceeEEEEEechhhhhccCCCceeEeeccc
Q 007848 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLST 313 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~ 313 (587)
+++++||++.+++.++... ....+|.+++.+
T Consensus 75 ~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred CCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 9999999999999999853 445577777654
No 140
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.52 E-value=2.1e-13 Score=122.73 Aligned_cols=92 Identities=20% Similarity=0.303 Sum_probs=78.2
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+.++..+.+||||+++... .+...+||+++++++||.||| |.|.+.. .....|.|+|||++..
T Consensus 3 ~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~---~~~~~~kT~~~~~t~~P~Wne~f~f~i~~--~~~~~L~i~v~d~d~~ 77 (126)
T cd04043 3 FTIRIVRAENLKADSSNGLSDPYVTLVDTN---GKRRIAKTRTIYDTLNPRWDEEFELEVPA--GEPLWISATVWDRSFV 77 (126)
T ss_pred EEEEEEEeECCCCCCCCCCCCceEEEEECC---CCeeeecccEecCCCCCcccceEEEEcCC--CCCCEEEEEEEECCCC
Confidence 567899999999999999999999998743 224578999999999999997 7777652 2357899999999998
Q ss_pred CCCceeEEEEEechhhhh
Q 007848 282 GKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~ 299 (587)
+++++||++.+++.++..
T Consensus 78 ~~~~~iG~~~i~l~~~~~ 95 (126)
T cd04043 78 GKHDLCGRASLKLDPKRF 95 (126)
T ss_pred CCCceEEEEEEecCHHHc
Confidence 899999999999998753
No 141
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.52 E-value=1.1e-14 Score=132.99 Aligned_cols=106 Identities=16% Similarity=0.209 Sum_probs=85.7
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
.++.+. ++|+||+.+|..|++||||+|++.+ .++.....||+++++++||.|+|+|.|.+..+. ...|.|+|||+|
T Consensus 15 ~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~-~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d 93 (136)
T cd08404 15 NRLTVVVLKARHLPKMDVSGLADPYVKVNLYY-GKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCeEEEEEEEc-CCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECC
Confidence 456665 7999999999999999999999976 244446789999999999999999999876543 347899999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.. +++++||++.+++.. ...+...|++|..
T Consensus 94 ~~-----------~~~~~iG~~~~~~~~--~~~~~~~w~~l~~ 123 (136)
T cd08404 94 RV-----------TKNEVIGRLVLGPKA--SGSGGHHWKEVCN 123 (136)
T ss_pred CC-----------CCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence 75 789999999999988 2344556766643
No 142
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.52 E-value=4.6e-14 Score=128.82 Aligned_cols=93 Identities=17% Similarity=0.284 Sum_probs=77.6
Q ss_pred cEEEEE-EEEeCCCCCCC--CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEE
Q 007848 47 SQIELS-FSAADLRDRDV--LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYD 121 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~--~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D 121 (587)
.++.+. ++|+||+.+|. .+.+||||+|++.+. ++...+.||+++++++||+|||.|.|.+..+.. ..|.|+|||
T Consensus 15 ~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~-~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d 93 (138)
T cd08407 15 NRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQ-NAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLN 93 (138)
T ss_pred CeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcC-CcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEe
Confidence 456665 79999999983 355999999999873 444568899999999999999999999876543 479999999
Q ss_pred cCCCccccccccccccccccccceeeecch
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~ 151 (587)
+|.. +++++||++.+.+..
T Consensus 94 ~d~~-----------~~~d~iG~v~lg~~~ 112 (138)
T cd08407 94 QDSP-----------GQSLPLGRCSLGLHT 112 (138)
T ss_pred CCCC-----------cCcceeceEEecCcC
Confidence 9976 789999999998854
No 143
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.52 E-value=8.6e-14 Score=124.63 Aligned_cols=115 Identities=23% Similarity=0.356 Sum_probs=86.9
Q ss_pred ccceeeeccccCCcCCC-CCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEecc
Q 007848 202 TTTELILRCSDLDCKDL-FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~-~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d 279 (587)
.+.+.+++|++|+..+. .+.+||||++.+... ...+||+++++++||.||+ |.+.+. .....|.|+|||++
T Consensus 3 ~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~----~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~ 75 (124)
T cd04044 3 VLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR----RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFN 75 (124)
T ss_pred EEEEEEEcccCCCcccccCCCCCCeEEEEECCC----CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecC
Confidence 46678999999997764 467999999999541 3478999999999999998 666654 34679999999999
Q ss_pred CCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 280 SNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
..+++++||++.+++.++.........+..+. +.+| . .|+|++.
T Consensus 76 ~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~--~~~k----~-~G~i~~~ 119 (124)
T cd04044 76 DKRKDKLIGTAEFDLSSLLQNPEQENLTKNLL--RNGK----P-VGELNYD 119 (124)
T ss_pred CCCCCceeEEEEEEHHHhccCccccCcchhhh--cCCc----c-ceEEEEE
Confidence 99899999999999999975322211222222 1122 2 8999983
No 144
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.52 E-value=5.8e-14 Score=128.27 Aligned_cols=93 Identities=19% Similarity=0.326 Sum_probs=79.0
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~D 123 (587)
..+++. ++|++|+.+|..|++||||+|++.+ .++.....||+++++++||.|+|.|.|.+..+.. ..|+|+|||+|
T Consensus 15 ~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~ 93 (136)
T cd08402 15 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ-NGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYD 93 (136)
T ss_pred CeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE-CCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCC
Confidence 457776 6899999999999999999999975 3444467899999999999999999998765443 37999999999
Q ss_pred CCccccccccccccccccccceeeecch
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~ 151 (587)
.. +++++||++.+++..
T Consensus 94 ~~-----------~~~~~iG~~~i~~~~ 110 (136)
T cd08402 94 RI-----------GKNDPIGKVVLGCNA 110 (136)
T ss_pred CC-----------CCCceeEEEEECCcc
Confidence 75 789999999999865
No 145
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.51 E-value=9.5e-14 Score=126.73 Aligned_cols=118 Identities=25% Similarity=0.413 Sum_probs=87.2
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-CC------CCCcEEE
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-GS------KDSPLII 273 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-~~------~~~~L~i 273 (587)
++.+.+++|++|+.+|.+|.+||||++++.+ ..+||+++++++||.||+ |.|....+ ++ ....|.|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v 75 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN------QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVV 75 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC------eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEE
Confidence 4678899999999999999999999999843 268999999999999999 66665433 11 2357999
Q ss_pred EEEeccCCCCCceeEEEEE-echhhhh---ccCCCceeEeecccccCCCCcccccccEEEeEeee
Q 007848 274 ECFNFNSNGKHDLIGKVQK-SLADLEK---LHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSE 334 (587)
Q Consensus 274 ~V~D~d~~~~dd~IG~~~i-~l~~l~~---~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~~~~~ 334 (587)
+|||++..++|++||++.+ ++..+.. .....+|+.|... ++ .+|+|.+ .+++
T Consensus 76 ~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~---~~-----~~Geil~-~~~~ 131 (135)
T cd04017 76 ELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKG---GQ-----SAGELLA-AFEL 131 (135)
T ss_pred EEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecC---CC-----chhheeE-EeEE
Confidence 9999999999999999987 4444432 1222356666311 11 2899988 4443
No 146
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.51 E-value=1.3e-13 Score=129.10 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=87.9
Q ss_pred cccceeeeccccCCcCC------------------------------CCCCCCcEEEEEEEcCCCceeeEEecceecCCC
Q 007848 201 KTTTELILRCSDLDCKD------------------------------LFSRNDPFLVISKIVESGTHIPVCKTEVLKNET 250 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d------------------------------~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tl 250 (587)
+.+.+.+++|++|+++| ..|.+||||++.+.+ ..+.||+++++++
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~-----~~~~rT~v~~~~~ 81 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG-----ARVARTRVIENSE 81 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC-----eEeeEEEEeCCCC
Confidence 45667888999999887 356789999999843 2357999999999
Q ss_pred CCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEE
Q 007848 251 KPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 251 nP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
||.||| |.|.+. .....|.|+|||++..+ +++||.+.+++.++........|++|..+..+. .+. .|.|+|
T Consensus 82 nP~WnE~F~~~~~---~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~---~~~-~~~l~v 153 (158)
T cd04015 82 NPVWNESFHIYCA---HYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKP---PKP-GAKIRV 153 (158)
T ss_pred CCccceEEEEEcc---CCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCC---CCC-CCEEEE
Confidence 999999 777664 23468999999999876 489999999999997544344677776643221 122 678887
No 147
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.51 E-value=4e-14 Score=127.37 Aligned_cols=90 Identities=22% Similarity=0.278 Sum_probs=76.3
Q ss_pred cccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEecc
Q 007848 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d 279 (587)
+.+.+.+++|++|+ .+.++.+|||++|++.+ + ++||+++++++||+||| |.|....+ .....|+|+|||++
T Consensus 28 ~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~---~---~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d 99 (127)
T cd04032 28 ATLTVTVLRATGLW-GDYFTSTDGYVKVFFGG---Q---EKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRD 99 (127)
T ss_pred EEEEEEEEECCCCC-cCcCCCCCeEEEEEECC---c---cccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCC
Confidence 45777889999998 47889999999999843 2 78999999999999998 77764333 24679999999999
Q ss_pred CCCCCceeEEEEEechhhh
Q 007848 280 SNGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~ 298 (587)
..++|++||++.++|....
T Consensus 100 ~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 100 NGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCeeEEEEEEecCCc
Confidence 9999999999999999774
No 148
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.51 E-value=8.3e-14 Score=127.52 Aligned_cols=95 Identities=12% Similarity=0.270 Sum_probs=81.1
Q ss_pred ccEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEc
Q 007848 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDV 122 (587)
Q Consensus 46 ~~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~ 122 (587)
..++.++ ++|+||+.+|..+.+||||+|++.+.+++.....||+++++++||+|+|+|.|.+..+.. ..|.|.|||.
T Consensus 14 ~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~~~ 93 (138)
T cd08408 14 TGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVYNK 93 (138)
T ss_pred CCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEEEC
Confidence 4678887 799999999999999999999998755554557899999999999999999999775543 4899999999
Q ss_pred CCCccccccccccccccccccceeeecch
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~ 151 (587)
|.. +++++||++.+.+..
T Consensus 94 ~~~-----------~~~~~iG~v~l~~~~ 111 (138)
T cd08408 94 RKM-----------KRKEMIGWFSLGLNS 111 (138)
T ss_pred CCC-----------CCCcEEEEEEECCcC
Confidence 975 789999998887653
No 149
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.51 E-value=1.3e-13 Score=127.82 Aligned_cols=122 Identities=19% Similarity=0.123 Sum_probs=87.9
Q ss_pred ceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecC------CCCCcEEEEEE
Q 007848 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVG------SKDSPLIIECF 276 (587)
Q Consensus 204 ~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~------~~~~~L~i~V~ 276 (587)
.+....+.+|+..+..+.+||||++++.-. +.....+||.++++|+||+||| |.|.+.... -....|.|+||
T Consensus 7 ~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p-~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~ 85 (155)
T cd08690 7 TIVRCIGIPLPSGWNPKDLDTYVKFEFPYP-NEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVY 85 (155)
T ss_pred EEEEeeccccCCCcCCCCCCeEEEEEEecC-CCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEE
Confidence 334444444788888889999999997432 2234589999999999999998 776664210 12468999999
Q ss_pred eccCC-CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEeEeee
Q 007848 277 NFNSN-GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSE 334 (587)
Q Consensus 277 D~d~~-~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~~~~~ 334 (587)
|++.+ .+|++||++.++|..+........+++|+..+| ...|.|++ ++++
T Consensus 86 d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k-------~~Gg~l~v-~ir~ 136 (155)
T cd08690 86 HKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRK-------ATGGKLEV-KVRL 136 (155)
T ss_pred eCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCC-------CcCCEEEE-EEEe
Confidence 99986 579999999999999965444445666664322 23888888 3444
No 150
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.51 E-value=4e-14 Score=129.15 Aligned_cols=92 Identities=17% Similarity=0.225 Sum_probs=77.5
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
.++.+. ++|+||+.+|..+.+||||+|++.+ +++...+.||+++++++||+|||+|.|.+..+. ...|+|.|||+|
T Consensus 15 ~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~-~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d 93 (136)
T cd08406 15 ERLTVVVVKARNLVWDNGKTTADPFVKVYLLQ-DGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAEST 93 (136)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCeEEEEEEEe-CCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCC
Confidence 567776 6899999999999999999999987 333345779999999999999999999876543 358999999999
Q ss_pred CCccccccccccccccccccceeeecc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLS 150 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~ 150 (587)
.. +++++||++.+...
T Consensus 94 ~~-----------~~~~~iG~v~lg~~ 109 (136)
T cd08406 94 ED-----------GKTPNVGHVIIGPA 109 (136)
T ss_pred CC-----------CCCCeeEEEEECCC
Confidence 76 78999999988654
No 151
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.51 E-value=1.9e-13 Score=124.22 Aligned_cols=101 Identities=16% Similarity=0.304 Sum_probs=84.0
Q ss_pred EEEEE-EEEeCCCCCCCC----------CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEE
Q 007848 48 QIELS-FSAADLRDRDVL----------SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLV 116 (587)
Q Consensus 48 ~ieL~-v~arnL~~~D~~----------gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~ 116 (587)
.+++. ++|++|++.|.. +.+||||+|++.+ + ...||+++++++||.|+|.|.|.+. ....|.
T Consensus 5 ~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~---~--~~~kT~~~~~t~~P~Wne~f~~~v~--~~~~l~ 77 (132)
T cd04014 5 TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD---T--HIGKTSTKPKTNSPVWNEEFTTEVH--NGRNLE 77 (132)
T ss_pred EEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC---E--EEeEEeEcCCCCCCCcceeEEEEcC--CCCEEE
Confidence 36666 689999999863 6799999999953 2 4689999999999999999999876 335899
Q ss_pred EEEEEcCCCccccccccccccccccccceeeecchhhc--cCCeeEEEEccc
Q 007848 117 FRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT--RKNRSLTLDLVR 166 (587)
Q Consensus 117 ~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~--~~~~~l~~~L~~ 166 (587)
|.|||.+.. +++++||++.++|.++.. ......|++|..
T Consensus 78 ~~v~d~~~~-----------~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 118 (132)
T cd04014 78 LTVFHDAAI-----------GPDDFVANCTISFEDLIQRGSGSFDLWVDLEP 118 (132)
T ss_pred EEEEeCCCC-----------CCCceEEEEEEEhHHhcccCCCcccEEEEccC
Confidence 999998865 678999999999999987 455678999953
No 152
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.50 E-value=1.4e-13 Score=127.80 Aligned_cols=103 Identities=22% Similarity=0.279 Sum_probs=83.9
Q ss_pred ccEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCc-----------------------eeeEeeeeeecCCCCCceee
Q 007848 46 FSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGA-----------------------LVEVGRTEVVLNSLNPTWIT 101 (587)
Q Consensus 46 ~~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~-----------------------~~~~~rTevi~~tlNP~w~e 101 (587)
.-.++++ ++|++|+++|..|.+||||+|++.+.... .....||+++++++||.|++
T Consensus 27 ~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~WnE 106 (153)
T cd08676 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWNE 106 (153)
T ss_pred eEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcccc
Confidence 3556665 79999999999999999999998642110 12468999999999999999
Q ss_pred eEEEEeecCceeEEEEEEEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 102 KHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 102 ~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
+|.|.+.....+.|.|+|||+| +++||++.++++++. +.+...|++|
T Consensus 107 ~F~f~v~~~~~~~L~i~V~D~d---------------d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 107 TFRFEVEDVSNDQLHLDIWDHD---------------DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred EEEEEeccCCCCEEEEEEEecC---------------CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 9999886555679999999976 479999999999998 4556788876
No 153
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.50 E-value=1e-13 Score=124.45 Aligned_cols=101 Identities=30% Similarity=0.474 Sum_probs=86.8
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecC-CCCCceeeeEEEEeecC---ceeEEEEEEEEcC
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLN-SLNPTWITKHIITYQFE---VVQTLVFRIYDVD 123 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~-tlNP~w~e~f~~~~~~e---~~q~L~~~V~D~D 123 (587)
++++ ++|++|++.|..+++||||+|++.. ...+|+++++ ++||.|++.|.|.+... ..+.|.|+|||.+
T Consensus 3 L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 3 LEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred EEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 5565 6899999999999999999999853 4679999885 89999999999987765 3578999999998
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.. +++++||++.++|.++...+....|++|.+
T Consensus 77 ~~-----------~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 77 NF-----------SDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred cC-----------CCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 65 689999999999999988777788998865
No 154
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.50 E-value=8.3e-14 Score=126.79 Aligned_cols=98 Identities=24% Similarity=0.242 Sum_probs=81.2
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCC-ceeeEeeeeeecCCCCCceeeeEEEEeecC----ceeEEEEEEE
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDG-ALVEVGRTEVVLNSLNPTWITKHIITYQFE----VVQTLVFRIY 120 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~-~~~~~~rTevi~~tlNP~w~e~f~~~~~~e----~~q~L~~~V~ 120 (587)
..+.+. ++|++|+++|..+++||||+|++.+... .....+||+++++|+||.|+|+|.|.+..+ ....|.|+||
T Consensus 16 ~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~ 95 (133)
T cd04009 16 QSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVK 95 (133)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEE
Confidence 445665 7999999999999999999999975221 123689999999999999999999987653 2358999999
Q ss_pred EcCCCccccccccccccccccccceeeecchhhcc
Q 007848 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (587)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~ 155 (587)
|+|.. +++++||++.++|+++..-
T Consensus 96 d~d~~-----------~~d~~iG~~~i~l~~l~~~ 119 (133)
T cd04009 96 DYDLL-----------GSNDFEGEAFLPLNDIPGV 119 (133)
T ss_pred ecCCC-----------CCCcEeEEEEEeHHHCCcc
Confidence 99975 7899999999999999743
No 155
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=1.1e-13 Score=128.20 Aligned_cols=90 Identities=24% Similarity=0.330 Sum_probs=76.1
Q ss_pred EEE-EEEeCCCCCCCCC--------------CCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC-cee
Q 007848 50 ELS-FSAADLRDRDVLS--------------KSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQ 113 (587)
Q Consensus 50 eL~-v~arnL~~~D~~g--------------ksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e-~~q 113 (587)
.++ ++|++|+++|..+ .+||||+|.+.+ ...||+++++++||+|+|.|.|....+ ..+
T Consensus 3 ~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g------~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~ 76 (151)
T cd04018 3 IFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG------QKVKTSVKKNSYNPEWNEQIVFPEMFPPLCE 76 (151)
T ss_pred EEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC------EeeecceEcCCCCCCcceEEEEEeeCCCcCC
Confidence 444 6999999999654 789999999864 367999999999999999999986543 346
Q ss_pred EEEEEEEEcCCCccccccccccccccccccceeeecchhhccC
Q 007848 114 TLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (587)
Q Consensus 114 ~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~ 156 (587)
.|.|+|||+|.. +++++||++.++|.++....
T Consensus 77 ~l~~~v~D~d~~-----------~~dd~iG~~~l~l~~l~~~~ 108 (151)
T cd04018 77 RIKIQIRDWDRV-----------GNDDVIGTHFIDLSKISNSG 108 (151)
T ss_pred EEEEEEEECCCC-----------CCCCEEEEEEEeHHHhccCC
Confidence 999999999976 78999999999999987654
No 156
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.50 E-value=7.4e-14 Score=125.56 Aligned_cols=87 Identities=22% Similarity=0.260 Sum_probs=77.0
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|+++|..|++||||+|++.+ .....||+++++++||.|+|.|.|.+..+..+.|.|+|||+|..
T Consensus 7 i~a~~L~~~d~~g~~DPYv~v~~~~----~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~------- 75 (124)
T cd04037 7 VRARNLQPKDPNGKSDPYLKIKLGK----KKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLL------- 75 (124)
T ss_pred EECcCCCCCCCCCCCCcEEEEEECC----eeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCC-------
Confidence 7999999999999999999999954 12457999999999999999999988777778999999999975
Q ss_pred cccccccccccceeeecchhhc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVT 154 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~ 154 (587)
+++++||++.++|.+...
T Consensus 76 ----~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 76 ----GSDDLIGETVIDLEDRFF 93 (124)
T ss_pred ----CCCceeEEEEEeeccccc
Confidence 789999999999998764
No 157
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=1.4e-13 Score=121.86 Aligned_cols=90 Identities=26% Similarity=0.434 Sum_probs=77.4
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+..+..+.+||||++++.+ ..+++|+++++++||.||+ |.+.+.. .....|.|+|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~-----~~~~~T~v~~~~~~P~Wne~f~~~~~~--~~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG-----EKVFKTKTIKKTLNPVWNESFEVPVPS--RVRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC-----CcceeeceecCCCCCcccccEEEEecc--CCCCEEEEEEEeCCCC
Confidence 356789999999999999999999999833 2368999999999999998 7777652 2467899999999999
Q ss_pred CCCceeEEEEEechhhhh
Q 007848 282 GKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~ 299 (587)
+++++||++.+++.++..
T Consensus 74 ~~~~~iG~~~~~l~~l~~ 91 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEP 91 (115)
T ss_pred CCCCceEEEEEEHHHcCC
Confidence 999999999999999964
No 158
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.49 E-value=1.2e-13 Score=127.34 Aligned_cols=90 Identities=24% Similarity=0.444 Sum_probs=78.7
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
+.++ ++|+||+.+|. +.+||||+|++.. +..||+++++++||.|+|.|.|.+... .+.|+|+|||+|..
T Consensus 4 L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~~~-~~~l~~~V~D~d~~-- 73 (145)
T cd04038 4 LKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVPNP-MAPLKLEVFDKDTF-- 73 (145)
T ss_pred EEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcCCCCCeecccEEEEecCC-CCEEEEEEEECCCC--
Confidence 4555 68999999998 8999999999953 589999999999999999999987644 67999999999976
Q ss_pred ccccccccccccccccceeeecchhhccCC
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKN 157 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~ 157 (587)
+++++||++.+++.++.....
T Consensus 74 ---------~~dd~iG~a~i~l~~l~~~~~ 94 (145)
T cd04038 74 ---------SKDDSMGEAEIDLEPLVEAAK 94 (145)
T ss_pred ---------CCCCEEEEEEEEHHHhhhhhh
Confidence 789999999999999886543
No 159
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.49 E-value=1.2e-13 Score=120.27 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=79.1
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.|.+++|++|+..+..+.+||||++.+.+ ..+||++++++.||.||| |.|.+.. .....|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~------~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK------TTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC------EEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC-
Confidence 578899999999999999999999999943 378999999999999998 7777763 235689999999886
Q ss_pred CCCceeEEEEEechhhhhcc--CCCceeEee
Q 007848 282 GKHDLIGKVQKSLADLEKLH--SSGQGQNLF 310 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~--~~~~~~~l~ 310 (587)
+++||++.++|.++.... ....||+|.
T Consensus 73 --~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 101 (105)
T cd04050 73 --GKSLGSLTLPLSELLKEPDLTLDQPFPLD 101 (105)
T ss_pred --CCccEEEEEEHHHhhccccceeeeeEecC
Confidence 789999999999997422 123455553
No 160
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.49 E-value=1.3e-13 Score=128.04 Aligned_cols=105 Identities=19% Similarity=0.296 Sum_probs=83.1
Q ss_pred ccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCc-----------------------eeeEEecceecCCCCCce
Q 007848 198 INSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGT-----------------------HIPVCKTEVLKNETKPTW 254 (587)
Q Consensus 198 ~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~-----------------------~~~~~kT~vik~tlnP~W 254 (587)
+....+.+.+++|++|..+|.+|.+||||++++...... ...+++|+++++++||.|
T Consensus 25 ~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W 104 (153)
T cd08676 25 PPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVW 104 (153)
T ss_pred CCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCcc
Confidence 345667888999999999999999999999998542110 123689999999999999
Q ss_pred ee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 255 KS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 255 ne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
|+ |.|.+..+ ....|.|+|||++ +++||++.+++.++. ..+...||+|
T Consensus 105 nE~F~f~v~~~--~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 105 NETFRFEVEDV--SNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ccEEEEEeccC--CCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 98 88887644 2578999999998 789999999999997 2344445543
No 161
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.49 E-value=1.6e-13 Score=124.41 Aligned_cols=107 Identities=17% Similarity=0.262 Sum_probs=89.2
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC-ceeEEEEEEEEcCC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e-~~q~L~~~V~D~D~ 124 (587)
..+.+. ++|+||+..|..+.+||||.|++.+. +.....+||+++++++||.|+++|.|.+... ..+.|+|.|||.+.
T Consensus 13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~ 91 (131)
T cd04026 13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPD-PKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDR 91 (131)
T ss_pred CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcC-CCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCC
Confidence 345555 78999999999999999999999752 2234689999999999999999999987643 35689999999986
Q ss_pred CccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 125 QFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 125 ~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
. +++++||++.++|+++... ....|++|.+
T Consensus 92 ~-----------~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~ 121 (131)
T cd04026 92 T-----------TRNDFMGSLSFGVSELIKM-PVDGWYKLLN 121 (131)
T ss_pred C-----------CCcceeEEEEEeHHHhCcC-ccCceEECcC
Confidence 5 6899999999999999854 5678999976
No 162
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.49 E-value=1e-13 Score=126.88 Aligned_cols=100 Identities=17% Similarity=0.200 Sum_probs=86.0
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC---------------ceeEEEE
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---------------VVQTLVF 117 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e---------------~~q~L~~ 117 (587)
++|+||+.+ ..+++||||+|++... .+...+||+++++++||.|++.|.|.+... ..+.|+|
T Consensus 6 i~A~~L~~~-~~g~~dPyv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i 82 (137)
T cd08675 6 LECRDLALK-SNGTCDPFARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRV 82 (137)
T ss_pred EEccCCCcc-cCCCCCcEEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEE
Confidence 799999998 7899999999999742 223689999999999999999999986543 4568999
Q ss_pred EEEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 118 RIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 118 ~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+|||.+.. ++++|||++.++|.++........|++|.+
T Consensus 83 ~V~d~~~~-----------~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 83 ELWHASMV-----------SGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred EEEcCCcC-----------cCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 99999975 689999999999999987666778999976
No 163
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.49 E-value=1.3e-13 Score=123.84 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=88.8
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceec-CCCCCceee-ceEEeeec--CCCCCcEEEEEEec
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLK-NETKPTWKS-VFLNIQQV--GSKDSPLIIECFNF 278 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik-~tlnP~Wne-f~~~~~~l--~~~~~~L~i~V~D~ 278 (587)
+.+.+++|++|+..+.++.+||||++++.. ...++|++++ ++.||.||+ |.|.+... ++....|.|+|||+
T Consensus 2 L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~-----~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~ 76 (125)
T cd04051 2 LEITIISAEDLKNVNLFGKMKVYAVVWIDP-----SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCE 76 (125)
T ss_pred EEEEEEEcccCCCCCcccCCceEEEEEECC-----CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEEC
Confidence 567899999999999999999999999954 1267999876 589999998 76666432 12367899999999
Q ss_pred cCCCCCceeEEEEEechhhhhccCC-----CceeEeecccccCCCCcccccccEEE
Q 007848 279 NSNGKHDLIGKVQKSLADLEKLHSS-----GQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~~~~~-----~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
+..+++++||++.+++.++...... ..+|.|..+. +|. .|.|+|
T Consensus 77 ~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~--g~~-----~G~~~~ 125 (125)
T cd04051 77 RPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPS--GKP-----QGVLNF 125 (125)
T ss_pred CCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCC--CCc-----CeEEeC
Confidence 9988899999999999999864332 2456665533 222 888864
No 164
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.49 E-value=1.9e-13 Score=124.97 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=84.3
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCC-------------CC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGS-------------KD 268 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~-------------~~ 268 (587)
+.+.+++|++|+.+ ..+.+||||++++... .+..++||++++++.||.|++ |.|.+..... ..
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~--~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~ 77 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS--SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEK 77 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC--CcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccc
Confidence 35779999999998 8899999999999642 233578999999999999998 7777654310 35
Q ss_pred CcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 269 SPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 269 ~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
..|.|+|||++..+++++||++.+++.++........|+.|..
T Consensus 78 ~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~ 120 (137)
T cd08675 78 SELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQP 120 (137)
T ss_pred cEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCC
Confidence 6899999999998899999999999999975333445565543
No 165
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.49 E-value=1.1e-13 Score=128.22 Aligned_cols=90 Identities=23% Similarity=0.269 Sum_probs=75.7
Q ss_pred cceeeeccccCCcCCCCC--------------CCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCC
Q 007848 203 TTELILRCSDLDCKDLFS--------------RNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSK 267 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g--------------~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~ 267 (587)
+.+.+++|++|+.+|..+ .+||||+|.+.+ + ..||+++++++||+||| |.|++.. ...
T Consensus 2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g---~---~~kT~v~~~t~nPvWNE~f~f~v~~-p~~ 74 (151)
T cd04018 2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG---Q---KVKTSVKKNSYNPEWNEQIVFPEMF-PPL 74 (151)
T ss_pred eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC---E---eeecceEcCCCCCCcceEEEEEeeC-CCc
Confidence 567899999999998554 689999999843 2 46999999999999998 7776532 233
Q ss_pred CCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 268 DSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 268 ~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
...|.|+|||+|..+++++||.+.+++.++..
T Consensus 75 ~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~ 106 (151)
T cd04018 75 CERIKIQIRDWDRVGNDDVIGTHFIDLSKISN 106 (151)
T ss_pred CCEEEEEEEECCCCCCCCEEEEEEEeHHHhcc
Confidence 57899999999999999999999999999964
No 166
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.48 E-value=1.5e-13 Score=126.63 Aligned_cols=88 Identities=25% Similarity=0.484 Sum_probs=77.6
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+.+.+++|++|+..|. +.+||||++++.. ..+||+++++++||.||| |.|.+. +....|.|+|||++.
T Consensus 3 ~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~------~~~kT~vvk~t~nP~WnE~f~f~i~---~~~~~l~~~V~D~d~ 72 (145)
T cd04038 3 LLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN------QKVKTRVIKKNLNPVWNEELTLSVP---NPMAPLKLEVFDKDT 72 (145)
T ss_pred EEEEEEEeeECCCCCCC-CCcCcEEEEEECC------EEEEeeeEcCCCCCeecccEEEEec---CCCCEEEEEEEECCC
Confidence 46788999999999988 8999999999843 278999999999999998 777765 337789999999999
Q ss_pred CCCCceeEEEEEechhhhh
Q 007848 281 NGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~ 299 (587)
+++|++||++.+++.++..
T Consensus 73 ~~~dd~iG~a~i~l~~l~~ 91 (145)
T cd04038 73 FSKDDSMGEAEIDLEPLVE 91 (145)
T ss_pred CCCCCEEEEEEEEHHHhhh
Confidence 9999999999999999975
No 167
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.48 E-value=2.9e-13 Score=122.06 Aligned_cols=114 Identities=18% Similarity=0.211 Sum_probs=84.6
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+.+.+++|+||+.. +.+||||++++.+ ..+.||++ ++++||.||| |.|... ......+.|.|||++.
T Consensus 5 ~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~-----~~~~kT~v-~~~~nP~WnE~f~f~~~--~~~~~~l~v~v~d~~~ 73 (126)
T cd08400 5 SLQLNVLEAHKLPVK---HVPHPYCVISLNE-----VKVARTKV-REGPNPVWSEEFVFDDL--PPDVNSFTISLSNKAK 73 (126)
T ss_pred EEEEEEEEeeCCCCC---CCCCeeEEEEECC-----EeEEEeec-CCCCCCccCCEEEEecC--CCCcCEEEEEEEECCC
Confidence 478899999999975 4689999999932 23568887 4689999998 766532 2223578999999999
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.+++++||++.+++.++........|+.|..... ++.+. .|.|+|.
T Consensus 74 ~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~---~~~~~-~G~i~l~ 119 (126)
T cd08400 74 RSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASP---LKGGE-WGSLRIR 119 (126)
T ss_pred CCCCCeEEEEEEEHhHccCCCcccEeEEcccCCC---CCCCc-CcEEEEE
Confidence 9999999999999999975333345666654321 11223 8999994
No 168
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.48 E-value=1.3e-13 Score=125.87 Aligned_cols=104 Identities=21% Similarity=0.305 Sum_probs=82.7
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
..+.++ ++|+||+++|..|++||||+|++.+. +......||+++++++||.|+|.|.|.+..+. ...|.|+|||.|
T Consensus 15 ~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~-~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~ 93 (136)
T cd08405 15 NRITVNIIKARNLKAMDINGTSDPYVKVWLMYK-DKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKD 93 (136)
T ss_pred CeEEEEEEEeeCCCccccCCCCCceEEEEEEeC-CCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECC
Confidence 456666 79999999999999999999998652 23335789999999999999999999876543 358999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
.. +++++||++.+++.+. ......|+++
T Consensus 94 ~~-----------~~~~~lG~~~i~~~~~--~~~~~~w~~~ 121 (136)
T cd08405 94 RL-----------SRNDLIGKIYLGWKSG--GLELKHWKDM 121 (136)
T ss_pred CC-----------CCCcEeEEEEECCccC--CchHHHHHHH
Confidence 75 7899999999999875 2223345554
No 169
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.48 E-value=1.8e-13 Score=123.02 Aligned_cols=90 Identities=23% Similarity=0.305 Sum_probs=76.9
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+.+|..|.+||||++++.+. ...+||+++++++||.||| |.|.... .....|.|+|||++..
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~----~~~~kT~~v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~~ 75 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK----KINDRDNYIPNTLNPVFGKMFELEATL--PGNSILKISVMDYDLL 75 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe----eccceeeEEECCCCCccceEEEEEecC--CCCCEEEEEEEECCCC
Confidence 4577999999999999999999999998432 2457899999999999998 7776542 3367899999999999
Q ss_pred CCCceeEEEEEechhhh
Q 007848 282 GKHDLIGKVQKSLADLE 298 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~ 298 (587)
+++++||++.+++.+..
T Consensus 76 ~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 76 GSDDLIGETVIDLEDRF 92 (124)
T ss_pred CCCceeEEEEEeecccc
Confidence 99999999999999885
No 170
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.47 E-value=2.3e-13 Score=122.05 Aligned_cols=104 Identities=21% Similarity=0.256 Sum_probs=84.4
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC---ceeEEEEEEEEc
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE---VVQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e---~~q~L~~~V~D~ 122 (587)
..++++ ++|++|++.|..+.+||||++++.+. ..+....||+++++++||.|++.|.|....+ ..+.|.|+|||.
T Consensus 15 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~-~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~ 93 (123)
T cd04035 15 SALHCTIIRAKGLKAMDANGLSDPYVKLNLLPG-ASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDE 93 (123)
T ss_pred CEEEEEEEEeeCCCCCCCCCCCCceEEEEEecC-CCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEc
Confidence 557776 68999999999999999999998752 2234689999999999999999998863322 235899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhccCCeeEEEE
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLD 163 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~ 163 (587)
+.. ++++||++.++|+++...+...+++.
T Consensus 94 ~~~------------~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 94 DRF------------GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred CCc------------CCeeEEEEEEEcccCCCCcceEeecc
Confidence 852 67899999999999998776666554
No 171
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.47 E-value=1.2e-13 Score=126.02 Aligned_cols=90 Identities=18% Similarity=0.371 Sum_probs=75.0
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCcee--EEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q--~L~~~V~D~D 123 (587)
..+++. ++|+||+.+|..|.+||||+|++.+ .++.....||+++++|+||.|+|+|.|.+..+..+ .|+|+|||+|
T Consensus 14 ~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~-~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d 92 (135)
T cd08410 14 GRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH-GLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHN 92 (135)
T ss_pred CeEEEEEEEecCCCcccCCCCCCeEEEEEEEc-CCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCC
Confidence 457775 7999999999999999999999865 23334578999999999999999999987655443 6999999999
Q ss_pred CCccccccccccccccccccceeee
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCT 148 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~ 148 (587)
.. +++++||++.+.
T Consensus 93 ~~-----------~~~~~iG~~~l~ 106 (135)
T cd08410 93 VK-----------SSNDFIGRIVIG 106 (135)
T ss_pred CC-----------CCCcEEEEEEEc
Confidence 76 789999998754
No 172
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.47 E-value=3.8e-13 Score=120.19 Aligned_cols=100 Identities=22% Similarity=0.337 Sum_probs=84.0
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFH 127 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~ 127 (587)
++++ ++|++|++.|..+++||||+|++.. + ..++|+++++++||.|++.|.|.+... .+.|+|+|||.+..
T Consensus 3 L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~---~--~~~kT~~~~~t~~P~Wne~f~~~v~~~-~~~L~v~v~d~~~~-- 74 (120)
T cd04045 3 LRLHIRKANDLKNLEGVGKIDPYVRVLVNG---I--VKGRTVTISNTLNPVWDEVLYVPVTSP-NQKITLEVMDYEKV-- 74 (120)
T ss_pred EEEEEEeeECCCCccCCCCcCCEEEEEECC---E--EeeceeEECCCcCCccCceEEEEecCC-CCEEEEEEEECCCC--
Confidence 4555 5899999999999999999999843 2 589999999999999999998876543 46899999999975
Q ss_pred ccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 128 NVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 128 ~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+++++||++.++|.++... ...-|+.|.+
T Consensus 75 ---------~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~ 103 (120)
T cd04045 75 ---------GKDRSLGSVEINVSDLIKK-NEDGKYVEYD 103 (120)
T ss_pred ---------CCCCeeeEEEEeHHHhhCC-CCCceEEecC
Confidence 7889999999999999876 4456776654
No 173
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.47 E-value=1.1e-13 Score=126.06 Aligned_cols=104 Identities=22% Similarity=0.324 Sum_probs=83.3
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~D 123 (587)
..+.++ ++|++|+++|..|++||||+|++.. .++.....||+++++++||.|+|.|.|.+..+.. ..|.|+|||+|
T Consensus 14 ~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~-~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~ 92 (134)
T cd08403 14 GRLTLTIIKARNLKAMDITGFSDPYVKVSLMC-EGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYD 92 (134)
T ss_pred CEEEEEEEEeeCCCccccCCCCCceEEEEEEe-CCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECC
Confidence 557776 6899999999999999999999975 3444468899999999999999999998765443 36999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
.. +++++||++.+++... ..+...|+++
T Consensus 93 ~~-----------~~~~~IG~~~l~~~~~--~~~~~~w~~~ 120 (134)
T cd08403 93 RV-----------GHNELIGVCRVGPNAD--GQGREHWNEM 120 (134)
T ss_pred CC-----------CCCceeEEEEECCCCC--CchHHHHHHH
Confidence 76 7899999999987622 2333445555
No 174
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.46 E-value=3e-13 Score=119.07 Aligned_cols=97 Identities=13% Similarity=0.183 Sum_probs=79.3
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc----eeEEEEEEEEcC
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV----VQTLVFRIYDVD 123 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~----~q~L~~~V~D~D 123 (587)
+.++ ++|++|+ .+.+||||+|++.+ +..||+++++++||.|+|.|.|.+.... ...|.|+|||.+
T Consensus 6 l~V~v~~a~~L~----~~~~dpyv~v~~~~------~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~ 75 (111)
T cd04011 6 VRVRVIEARQLV----GGNIDPVVKVEVGG------QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSR 75 (111)
T ss_pred EEEEEEEcccCC----CCCCCCEEEEEECC------EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCc
Confidence 4444 6899998 57899999999964 4779999999999999999998865432 358999999998
Q ss_pred CCccccccccccccccccccceeeecchhhccCCe---eEEEEccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR---SLTLDLVR 166 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~---~l~~~L~~ 166 (587)
.. +++++||++.++|+++...+.. ..|++|.+
T Consensus 76 ~~-----------~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 76 SL-----------RSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cc-----------ccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 75 6799999999999999766543 45888853
No 175
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.46 E-value=3.9e-13 Score=120.71 Aligned_cols=102 Identities=21% Similarity=0.335 Sum_probs=81.7
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecC-CCCCceee-ceEEeeec-CCCCCcEEEEEEec
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQV-GSKDSPLIIECFNF 278 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~-tlnP~Wne-f~~~~~~l-~~~~~~L~i~V~D~ 278 (587)
.+.+.+++|++|+.++.++++||||++++.. ..++|+++++ ++||.||+ |.|.+... ......|.|+|||+
T Consensus 2 ~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~------~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~ 75 (124)
T cd04049 2 TLEVLLISAKGLQDTDFLGKIDPYVIIQCRT------QERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDK 75 (124)
T ss_pred eEEEEEEecCCCCCCCCCCCcCceEEEEECC------EeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEEC
Confidence 4668899999999999999999999999843 2579999885 89999998 76666532 11257899999999
Q ss_pred cCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 279 NSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
+..+++++||++.+++.++........|+++
T Consensus 76 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 76 DNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred ccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 9998999999999999999754444445544
No 176
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.46 E-value=5.9e-13 Score=119.84 Aligned_cols=89 Identities=21% Similarity=0.340 Sum_probs=74.7
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
++.+.+++|+ |...+.++.+||||++++. ++ ..+||+++++++||.||+ |.|.+. ....|.|+|||++.
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~---~~--~~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~ 72 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVD---GQ--PPKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHT 72 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEEC---Cc--ccEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCC
Confidence 4667778887 6666668899999999983 22 478999999999999998 777754 25789999999999
Q ss_pred CCCCceeEEEEEechhhhhc
Q 007848 281 NGKHDLIGKVQKSLADLEKL 300 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~ 300 (587)
.+++++||++.+++.++...
T Consensus 73 ~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 73 LKADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCCcEEEEEEEEHHHhHhh
Confidence 99999999999999999753
No 177
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=6.9e-13 Score=142.64 Aligned_cols=163 Identities=18% Similarity=0.290 Sum_probs=120.9
Q ss_pred CcccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeee
Q 007848 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ 263 (587)
Q Consensus 185 ~~~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~ 263 (587)
...|+|.++..|......+.|.+++|++|+.+|..|.+||||++++..+. ....+|++.++++||.||| |.|.+..
T Consensus 151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk---~~k~kT~v~r~tlnP~fnEtf~f~v~~ 227 (421)
T KOG1028|consen 151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK---KGKFKTRVHRKTLNPVFNETFRFEVPY 227 (421)
T ss_pred eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC---CCcceeeeeecCcCCccccceEeecCH
Confidence 56899999999999999999999999999999966789999999998853 3478999999999999999 6655322
Q ss_pred cCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEeEeeeeeeeeeecc
Q 007848 264 VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESVQYTFLDY 343 (587)
Q Consensus 264 l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~~~~~~~~~sFldy 343 (587)
-....+.|.+.|||+|.+++|++||++.++|..+........|.++.-... ..... .|+|.+..|.+..
T Consensus 228 ~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~---~~~~~-~gel~~sL~Y~p~------- 296 (421)
T KOG1028|consen 228 EELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSST---DSEEL-AGELLLSLCYLPT------- 296 (421)
T ss_pred HHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccC---Ccccc-cceEEEEEEeecC-------
Confidence 123378999999999999999999999999998864332223444433221 11111 4788885442221
Q ss_pred ccCcceEEEEEEeccccCC
Q 007848 344 LAGGFELNFMVAVDFTASN 362 (587)
Q Consensus 344 i~~g~~~~~~~aiDft~sN 362 (587)
.|-+.+.++=|=++...+
T Consensus 297 -~g~ltv~v~kar~L~~~~ 314 (421)
T KOG1028|consen 297 -AGRLTVVVIKARNLKSMD 314 (421)
T ss_pred -CCeEEEEEEEecCCCccc
Confidence 345556666666666543
No 178
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.43 E-value=2.2e-13 Score=123.67 Aligned_cols=106 Identities=18% Similarity=0.225 Sum_probs=88.8
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D 123 (587)
.++++. ++|+||+.+|..+.+||||++++.+ .+......||++++++.||.|+++|.|.+..+. ...|+|+|||.+
T Consensus 14 ~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~-~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~ 92 (134)
T cd00276 14 ERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQ-GGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD 92 (134)
T ss_pred CEEEEEEEEeeCCCCccCCCCCCcEEEEEEEc-CCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence 567777 7899999999999999999999986 334456889999999999999999999877654 468999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.. +++++||++.+++++ ...+...|++|.+
T Consensus 93 ~~-----------~~~~~lG~~~i~l~~--~~~~~~~W~~l~~ 122 (134)
T cd00276 93 SV-----------GRNEVIGQVVLGPDS--GGEELEHWNEMLA 122 (134)
T ss_pred CC-----------CCCceeEEEEECCCC--CCcHHHHHHHHHh
Confidence 75 688999999999999 4445566777754
No 179
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.43 E-value=2.7e-12 Score=115.59 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=92.4
Q ss_pred EEEEE-EEEeCCCCCC--CCCCCCcEEEEEEecCCCceeeEeeeeeecCCC-CCceeeeEEEEeecCceeEEEEEEEEcC
Q 007848 48 QIELS-FSAADLRDRD--VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSL-NPTWITKHIITYQFEVVQTLVFRIYDVD 123 (587)
Q Consensus 48 ~ieL~-v~arnL~~~D--~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tl-NP~w~e~f~~~~~~e~~q~L~~~V~D~D 123 (587)
+++++ ++|+||+.++ ..+.+||||++++.....+.....||+++.++. ||.|+|.|.|.........|+|+|||.+
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~~ 82 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDED 82 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeCC
Confidence 46666 6899999988 588999999999976322123689999988876 9999999999987766678999999988
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
.. ++++||++.++|.++.. ...+++|.+ ..+ +....|.|.+.++
T Consensus 83 ~~------------~~~~iG~~~~~l~~l~~---g~~~~~l~~-----------~~~--~~~~~~~l~v~~~ 126 (128)
T cd00275 83 SG------------DDDFLGQACLPLDSLRQ---GYRHVPLLD-----------SKG--EPLELSTLFVHID 126 (128)
T ss_pred CC------------CCcEeEEEEEEhHHhcC---ceEEEEecC-----------CCC--CCCcceeEEEEEE
Confidence 52 78999999999999953 235678865 222 2244678877654
No 180
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.42 E-value=1.2e-12 Score=118.86 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=85.6
Q ss_pred cccceeeeccccCCcCCCC----------CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCC
Q 007848 201 KTTTELILRCSDLDCKDLF----------SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDS 269 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~----------g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~ 269 (587)
+.+.+.+++|++|+..|.. +.+||||++.+. + ....+|+++++++||.||| |.+.+. ..+
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~---~--~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~ 74 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD---D--THIGKTSTKPKTNSPVWNEEFTTEVH----NGR 74 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC---C--EEEeEEeEcCCCCCCCcceeEEEEcC----CCC
Confidence 3466789999999988863 679999999983 3 2357999999999999998 777764 257
Q ss_pred cEEEEEEeccCCCCCceeEEEEEechhhhhc--cCCCceeEeecccccCCCCcccccccEEEe
Q 007848 270 PLIIECFNFNSNGKHDLIGKVQKSLADLEKL--HSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 270 ~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~--~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.|.|+|||++..+++++||.+.++|.++... .....|++|. . .|.|++.
T Consensus 75 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~---~---------~G~l~l~ 125 (132)
T cd04014 75 NLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE---P---------QGKLHVK 125 (132)
T ss_pred EEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc---C---------CcEEEEE
Confidence 8999999999888899999999999999752 2223344442 1 7888874
No 181
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.42 E-value=1.3e-12 Score=116.39 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=78.2
Q ss_pred EEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCc
Q 007848 48 QIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQF 126 (587)
Q Consensus 48 ~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~ 126 (587)
.+.++ ++||+|++++ ..||||+|.+.+ ++.+|.++++ .||.|+|.|.|.... ....|.|+|||.|.
T Consensus 3 ~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~------~k~kT~v~~~-~nP~WnE~F~F~~~~-~~~~L~v~V~dkd~-- 69 (127)
T cd08394 3 LLCVLVKKAKLDGAPD---KFNTYVTLKVQN------VKSTTIAVRG-SQPCWEQDFMFEINR-LDLGLVIELWNKGL-- 69 (127)
T ss_pred eEEEEEEEeeCCCCCC---CCCCeEEEEECC------EEeEeeECCC-CCCceeeEEEEEEcC-CCCEEEEEEEeCCC--
Confidence 45666 6899998766 358999999954 5889999988 499999999998754 33459999999884
Q ss_pred cccccccccccccccccceeeecchhhccCCe--eEEEEccc
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNR--SLTLDLVR 166 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~--~l~~~L~~ 166 (587)
..|||||++.++|.++..+... ..|++|..
T Consensus 70 ----------~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 70 ----------IWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred ----------cCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 3799999999999999865444 78999964
No 182
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.42 E-value=1.1e-13 Score=141.82 Aligned_cols=100 Identities=18% Similarity=0.252 Sum_probs=84.8
Q ss_pred EEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC-ceeEEEEEEEEcCCCccccccc
Q 007848 54 SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE-VVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 54 ~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e-~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
+|+||.+||..|.|||||++.+-++ .+-..++||++|+.+|||+|||+|.|..... ....|.++|||||..
T Consensus 188 ea~NLiPMDpNGlSDPYvk~kliPD-~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDrT------- 259 (683)
T KOG0696|consen 188 EAKNLIPMDPNGLSDPYVKLKLIPD-PKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDRT------- 259 (683)
T ss_pred hhccccccCCCCCCCcceeEEeccC-CcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEeccccc-------
Confidence 6899999999999999999999883 2334688999999999999999999987654 456999999999987
Q ss_pred cccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+++||+|...+.+++|...+. .-|+.|.+
T Consensus 260 ----sRNDFMGslSFgisEl~K~p~-~GWyKlLs 288 (683)
T KOG0696|consen 260 ----SRNDFMGSLSFGISELQKAPV-DGWYKLLS 288 (683)
T ss_pred ----ccccccceecccHHHHhhcch-hhHHHHhh
Confidence 799999999999999987653 34666644
No 183
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.40 E-value=5.9e-13 Score=117.18 Aligned_cols=89 Identities=17% Similarity=0.180 Sum_probs=73.3
Q ss_pred cccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec--CCCCCcEEEEEEe
Q 007848 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV--GSKDSPLIIECFN 277 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l--~~~~~~L~i~V~D 277 (587)
..+.+.+++|++|+ .+.+||||++.+.++ .+||+++++++||.||| |.|..... .-.+..|.|+|||
T Consensus 4 ~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~------~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 4 FQVRVRVIEARQLV----GGNIDPVVKVEVGGQ------KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred EEEEEEEEEcccCC----CCCCCCEEEEEECCE------eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 45778899999998 578999999999532 57999999999999998 66665321 1124689999999
Q ss_pred ccCCCCCceeEEEEEechhhhh
Q 007848 278 FNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 278 ~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
++..+++++||++.+++.++..
T Consensus 74 ~~~~~~~~~iG~~~i~l~~v~~ 95 (111)
T cd04011 74 SRSLRSDTLIGSFKLDVGTVYD 95 (111)
T ss_pred CcccccCCccEEEEECCccccC
Confidence 9999889999999999999964
No 184
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.40 E-value=1.4e-12 Score=116.28 Aligned_cols=99 Identities=18% Similarity=0.249 Sum_probs=78.3
Q ss_pred cccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEecc
Q 007848 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d 279 (587)
..|.|.+++|++|+.++. .||||++.+++ .+.+|.+++++ ||.||| |.|.... .+..|.|+|||++
T Consensus 2 ~~L~V~Vv~Ar~L~~~~~---~dPYV~Ik~g~------~k~kT~v~~~~-nP~WnE~F~F~~~~---~~~~L~v~V~dkd 68 (127)
T cd08394 2 SLLCVLVKKAKLDGAPDK---FNTYVTLKVQN------VKSTTIAVRGS-QPCWEQDFMFEINR---LDLGLVIELWNKG 68 (127)
T ss_pred ceEEEEEEEeeCCCCCCC---CCCeEEEEECC------EEeEeeECCCC-CCceeeEEEEEEcC---CCCEEEEEEEeCC
Confidence 357889999999987663 48999999943 26799999884 999998 8888753 3556999999998
Q ss_pred CCCCCceeEEEEEechhhhhccCC--CceeEeecccc
Q 007848 280 SNGKHDLIGKVQKSLADLEKLHSS--GQGQNLFLSTA 314 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~~~~~--~~~~~l~~~~k 314 (587)
.. +||+||++.++|.++...... ..||+|. +.-
T Consensus 69 ~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~-~~~ 103 (127)
T cd08394 69 LI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLD-SEV 103 (127)
T ss_pred Cc-CCCceEEEEEEhHHcccCCCCCCCccEecC-hHH
Confidence 65 889999999999999754443 5677775 443
No 185
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.39 E-value=1.7e-12 Score=114.29 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=80.9
Q ss_pred CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccccccccccccc
Q 007848 63 VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFL 142 (587)
Q Consensus 63 ~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~L 142 (587)
..|++||||+|++.+ + ..+||+++++++||.|+|.|.|.+.....+.|.|.|||.+. + ++++|
T Consensus 9 ~~G~~dPYv~v~v~~---~--~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~-----------~-~d~~i 71 (111)
T cd04052 9 KTGLLSPYAELYLNG---K--LVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRD-----------R-HDPVL 71 (111)
T ss_pred cCCCCCceEEEEECC---E--EEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCC-----------C-CCCeE
Confidence 568999999999953 2 47899999999999999999998765556789999999885 2 68999
Q ss_pred cceeeecchhhcc-CCeeEEEEccccccccccccccCCCCCCCCcccEEEeeccee
Q 007848 143 GEATCTLSQIVTR-KNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEEC 197 (587)
Q Consensus 143 G~~~i~L~~l~~~-~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~ 197 (587)
|++.++|.++... .....|++|.+ ...|+|++++.+.
T Consensus 72 G~~~v~L~~l~~~~~~~~~w~~L~~------------------~~~G~i~~~~~~~ 109 (111)
T cd04052 72 GSVSISLNDLIDATSVGQQWFPLSG------------------NGQGRIRISALWK 109 (111)
T ss_pred EEEEecHHHHHhhhhccceeEECCC------------------CCCCEEEEEEEEe
Confidence 9999999999653 33468999954 2358998887654
No 186
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.39 E-value=3.9e-13 Score=122.98 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=81.4
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCce--eEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVV--QTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~--q~L~~~V~D~D 123 (587)
.++.+. ++|+||+.+| .+.+||||+|++.+. ++.....||+++++++||.|+|.|.|.+..+.. ..|.|+|||.+
T Consensus 15 ~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~-~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~ 92 (137)
T cd08409 15 NRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIH-NKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG 92 (137)
T ss_pred CeEEEEEEEecCCCccc-CCCCCeEEEEEEEEC-CEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence 567777 6899999999 889999999999873 333457799999999999999999998765433 47999999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDL 164 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L 164 (587)
.. +++++||++.+.......+.....|.++
T Consensus 93 ~~-----------~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 93 GV-----------RKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred CC-----------CCcceEEEEEECCcccCCChHHHHHHHH
Confidence 75 7899999999875433333323334443
No 187
>PLN03008 Phospholipase D delta
Probab=99.37 E-value=6.6e-12 Score=140.68 Aligned_cols=151 Identities=20% Similarity=0.265 Sum_probs=108.0
Q ss_pred CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcccccccccccccccccc
Q 007848 64 LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLG 143 (587)
Q Consensus 64 ~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG 143 (587)
.++|||||+|.+.. + .+.||+|+++++||+|+|.|.|.+... ...|.|.|||.|.. + +++||
T Consensus 74 ~~tSDPYV~I~Lg~---~--rv~RTrVi~n~~NPvWNE~F~f~vah~-~s~L~f~VkD~D~~-----------g-aD~IG 135 (868)
T PLN03008 74 VITSDPYVTVVVPQ---A--TLARTRVLKNSQEPLWDEKFNISIAHP-FAYLEFQVKDDDVF-----------G-AQIIG 135 (868)
T ss_pred cCCCCceEEEEECC---c--ceeeEEeCCCCCCCCcceeEEEEecCC-CceEEEEEEcCCcc-----------C-CceeE
Confidence 46889999999953 1 478999999999999999999987753 34899999999976 4 58999
Q ss_pred ceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecceeccccccceeeeccccCCcC-CCCCCC
Q 007848 144 EATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCK-DLFSRN 222 (587)
Q Consensus 144 ~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~-d~~g~s 222 (587)
++.++|.++........|++|.+. ..+ ..+..|+|++++.+.+-..... -++.+... +..|.+
T Consensus 136 ~a~IPL~~L~~Ge~vd~Wl~Ll~~----------~~k--p~k~~~kl~v~lqf~pv~~~~~----~~~gv~~~~~~~gvp 199 (868)
T PLN03008 136 TAKIPVRDIASGERISGWFPVLGA----------SGK--PPKAETAIFIDMKFTPFDQIHS----YRCGIAGDPERRGVR 199 (868)
T ss_pred EEEEEHHHcCCCCceEEEEEcccc----------CCC--CCCCCcEEEEEEEEEEcccccc----ccccccCCcCCCCCC
Confidence 999999999988777899999651 111 2245689999887765433221 12222221 455666
Q ss_pred CcEEEEEEEcCCCceeeEEecceecCCCCC
Q 007848 223 DPFLVISKIVESGTHIPVCKTEVLKNETKP 252 (587)
Q Consensus 223 DPyv~v~~~~~~g~~~~~~kT~vik~tlnP 252 (587)
..|+.... |..+..|+-..+.++.-|
T Consensus 200 ~t~Fp~r~----g~~VtlYqdAhv~d~~~p 225 (868)
T PLN03008 200 RTYFPVRK----GSQVRLYQDAHVMDGTLP 225 (868)
T ss_pred CccccCCC----CCEeEEeccCCCCCCCCC
Confidence 66666544 334667777777666555
No 188
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.36 E-value=2.7e-12 Score=112.89 Aligned_cols=83 Identities=19% Similarity=0.408 Sum_probs=66.4
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec---
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF--- 278 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~--- 278 (587)
+.|.+.+|++|+ +.+||||++++... +....++||+++++|+||+||| |.+++. + ...|.+.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~-~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~--s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSF-GYFVKKAKTRVCRDTTEPNWNEEFEIELE--G--SQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCc-cccceeeeeeeecCCCCCccceEEEEEeC--C--CCEEEEEEEEcccc
Confidence 457889999996 56999999988542 3334589999999999999998 887765 2 67999999999
Q ss_pred ----cCCCCCceeEEEEEech
Q 007848 279 ----NSNGKHDLIGKVQKSLA 295 (587)
Q Consensus 279 ----d~~~~dd~IG~~~i~l~ 295 (587)
|..++|++||.+.+.|+
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 45578999977666554
No 189
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.35 E-value=3.9e-12 Score=114.87 Aligned_cols=94 Identities=19% Similarity=0.249 Sum_probs=76.0
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCC-CCceeeeEEEEeecCce-eEEEEEEEEcC
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSL-NPTWITKHIITYQFEVV-QTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tl-NP~w~e~f~~~~~~e~~-q~L~~~V~D~D 123 (587)
.++.+. ++|+||++++..+.+||||+|++.. .++...+.||+++++|+ ||.|||+|.|++..+.. -.|.++|||+|
T Consensus 14 ~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~-~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d~~ 92 (135)
T cd08692 14 SRIQLQILEAQNLPSSSTPLTLSFFVKVGMFS-TGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYSRS 92 (135)
T ss_pred CeEEEEEEEccCCCcccCCCCCCcEEEEEEEE-CCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEeCC
Confidence 456665 6899999987667789999999987 34445789999999996 69999999999776443 37888889988
Q ss_pred CCccccccccccccccccccceeeecchh
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQI 152 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l 152 (587)
.. +++++||++.+.....
T Consensus 93 ~~-----------~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 93 SV-----------RRKHFLGQVWISSDSS 110 (135)
T ss_pred CC-----------cCCceEEEEEECCccC
Confidence 65 7899999999987653
No 190
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.34 E-value=1.1e-11 Score=111.46 Aligned_cols=105 Identities=21% Similarity=0.237 Sum_probs=81.8
Q ss_pred ccceeeeccccCCcCC--CCCCCCcEEEEEEEcCCCceeeEEecceecCCC-CCceee-ceEEeeecCCCCCcEEEEEEe
Q 007848 202 TTTELILRCSDLDCKD--LFSRNDPFLVISKIVESGTHIPVCKTEVLKNET-KPTWKS-VFLNIQQVGSKDSPLIIECFN 277 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d--~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tl-nP~Wne-f~~~~~~l~~~~~~L~i~V~D 277 (587)
.+.+.+++|++|+..+ ..+.+||||++++..........+||++++++. ||.|+| |.|.... .....|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~--~~~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTV--PELAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeC--CCeEEEEEEEEe
Confidence 4678899999999988 688999999999976422134579999988875 999998 7777652 224579999999
Q ss_pred ccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 278 FNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 278 ~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
++.. ++++||++.+++.+|.. ...+++|.++
T Consensus 81 ~~~~-~~~~iG~~~~~l~~l~~---g~~~~~l~~~ 111 (128)
T cd00275 81 EDSG-DDDFLGQACLPLDSLRQ---GYRHVPLLDS 111 (128)
T ss_pred CCCC-CCcEeEEEEEEhHHhcC---ceEEEEecCC
Confidence 9988 88999999999999953 2345555543
No 191
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.32 E-value=8.6e-12 Score=109.74 Aligned_cols=86 Identities=19% Similarity=0.259 Sum_probs=64.4
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
.+|+||+ +.+||||++++.+. +....++||+++++|+||+|+|.|.|.+. ..+.|++.|||++......+
T Consensus 6 ~~A~~L~-----~~sDPYV~l~v~~~-~~~~~~~KTk~i~~TlnPvWnE~F~i~l~--~s~~L~~~v~d~~~~~~~~d-- 75 (118)
T cd08686 6 HSAQGFK-----QSANLYCTLEVDSF-GYFVKKAKTRVCRDTTEPNWNEEFEIELE--GSQTLRILCYEKCYSKVKLD-- 75 (118)
T ss_pred EeCCCCC-----CCCCCEEEEEEcCc-cccceeeeeeeecCCCCCccceEEEEEeC--CCCEEEEEEEEccccccccc--
Confidence 5788885 56999999998752 22236899999999999999999998875 46799999999841100000
Q ss_pred cccccccccccceeeecc
Q 007848 133 TLKLVEQQFLGEATCTLS 150 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~ 150 (587)
..++|+++|.+.+.|.
T Consensus 76 --~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 76 --GEGTDAIMGKGQIQLD 91 (118)
T ss_pred --ccCcccEEEEEEEEEC
Confidence 2268999988777664
No 192
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.29 E-value=3.6e-11 Score=106.50 Aligned_cols=111 Identities=23% Similarity=0.338 Sum_probs=79.8
Q ss_pred EEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCCCc
Q 007848 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQF 126 (587)
Q Consensus 50 eL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~~~ 126 (587)
++. ++|++|+.+ +.+||||+|++.. + ..+||.++++ +||.|+|+|.|....+. ...|.|.+||.+..
T Consensus 3 ~v~vi~a~~l~~~---~~~dpyv~v~~~~---~--~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~- 72 (117)
T cd08383 3 RLRILEAKNLPSK---GTRDPYCTVSLDQ---V--EVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK- 72 (117)
T ss_pred EEEEEEecCCCcC---CCCCceEEEEECC---E--EeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC-
Confidence 344 789999987 7899999999953 2 4689999999 99999999999876543 34677777777643
Q ss_pred cccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEeecc
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~ 195 (587)
.++.++|.+. |..+........|++|.+ ... .....|+|++.+.
T Consensus 73 ----------~~~~~~g~v~--l~~~~~~~~~~~w~~L~~-----------~~~--~~~~~G~l~l~~~ 116 (117)
T cd08383 73 ----------DRDIVIGKVA--LSKLDLGQGKDEWFPLTP-----------VDP--DSEVQGSVRLRAR 116 (117)
T ss_pred ----------CCeeEEEEEE--ecCcCCCCcceeEEECcc-----------CCC--CCCcCceEEEEEE
Confidence 4556677655 445544566678999975 211 1245799988653
No 193
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.29 E-value=3e-11 Score=106.39 Aligned_cols=95 Identities=19% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechh
Q 007848 218 LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (587)
Q Consensus 218 ~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~ 296 (587)
.+|.+||||++++.+ ...++|++++++.||.||+ |.|.+.. .....|.|+|||++.. ++++||++.++|.+
T Consensus 9 ~~G~~dPYv~v~v~~-----~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~ 80 (111)
T cd04052 9 KTGLLSPYAELYLNG-----KLVYTTRVKKKTNNPSWNASTEFLVTD--RRKSRVTVVVKDDRDR-HDPVLGSVSISLND 80 (111)
T ss_pred cCCCCCceEEEEECC-----EEEEEEeeeccCCCCccCCceEEEecC--cCCCEEEEEEEECCCC-CCCeEEEEEecHHH
Confidence 678999999999943 2368999999999999998 7777652 2357799999999998 88999999999999
Q ss_pred hhhccC-CCceeEeecccccCCCCcccccccEEEe
Q 007848 297 LEKLHS-SGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 297 l~~~~~-~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
+..... ...|+.|.. + . .|+|++.
T Consensus 81 l~~~~~~~~~w~~L~~-----~----~-~G~i~~~ 105 (111)
T cd04052 81 LIDATSVGQQWFPLSG-----N----G-QGRIRIS 105 (111)
T ss_pred HHhhhhccceeEECCC-----C----C-CCEEEEE
Confidence 964222 234555532 1 1 7999884
No 194
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.26 E-value=5.6e-11 Score=109.22 Aligned_cols=96 Identities=13% Similarity=0.135 Sum_probs=77.6
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|+.++ ||||.|.+.. + .++||.++.++.||.|+|.|.|.... ....|.|.||+.+....
T Consensus 18 ~EAk~Lp~~~-----~~Y~~i~Ld~---~--~vaRT~v~~~~~nP~W~E~F~f~~~~-~~~~l~v~v~k~~~~~~----- 81 (146)
T cd04013 18 IEAKGLPPKK-----RYYCELCLDK---T--LYARTTSKLKTDTLFWGEHFEFSNLP-PVSVITVNLYRESDKKK----- 81 (146)
T ss_pred EEccCCCCcC-----CceEEEEECC---E--EEEEEEEEcCCCCCcceeeEEecCCC-cccEEEEEEEEccCccc-----
Confidence 6899999876 8999999954 2 67899999999999999999986432 34689999997664310
Q ss_pred cccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
...++++||.+.+++.++........|++|..
T Consensus 82 --~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~ 113 (146)
T cd04013 82 --KKDKSQLIGTVNIPVTDVSSRQFVEKWYPVST 113 (146)
T ss_pred --cccCCcEEEEEEEEHHHhcCCCcccEEEEeec
Confidence 11367899999999999997777788999975
No 195
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.25 E-value=4e-11 Score=106.17 Aligned_cols=112 Identities=19% Similarity=0.207 Sum_probs=77.8
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|+.. +.+|||+++++. + ..++||+++++ +||.||| |.|.+..-......|.|.+||.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~---~--~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD---Q--VEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC---C--EEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccC
Confidence 55789999999986 789999999993 2 24689999999 9999998 7666542111235678888888776
Q ss_pred CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 282 GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.++.++|.+.+..... ......|++|......+ +. .|+|+|.
T Consensus 73 ~~~~~~g~v~l~~~~~--~~~~~~w~~L~~~~~~~----~~-~G~l~l~ 114 (117)
T cd08383 73 DRDIVIGKVALSKLDL--GQGKDEWFPLTPVDPDS----EV-QGSVRLR 114 (117)
T ss_pred CCeeEEEEEEecCcCC--CCcceeEEECccCCCCC----Cc-CceEEEE
Confidence 6667777776665444 33344566664332211 22 8999883
No 196
>PLN03008 Phospholipase D delta
Probab=99.25 E-value=2.5e-11 Score=136.15 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=77.3
Q ss_pred CCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 219 FSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 219 ~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
.++|||||+|.+.. ..+.||+++++++||+||| |.|++.. ....|+|+|||+|.++. ++||++.+++.+|
T Consensus 74 ~~tSDPYV~I~Lg~-----~rv~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~D~~ga-D~IG~a~IPL~~L 144 (868)
T PLN03008 74 VITSDPYVTVVVPQ-----ATLARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDDDVFGA-QIIGTAKIPVRDI 144 (868)
T ss_pred cCCCCceEEEEECC-----cceeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcCCccCC-ceeEEEEEEHHHc
Confidence 56889999999943 2367999999999999998 8888763 35799999999999975 8999999999999
Q ss_pred hhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 298 EKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 298 ~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
........|++|+....+. .+. .|+|+|.
T Consensus 145 ~~Ge~vd~Wl~Ll~~~~kp---~k~-~~kl~v~ 173 (868)
T PLN03008 145 ASGERISGWFPVLGASGKP---PKA-ETAIFID 173 (868)
T ss_pred CCCCceEEEEEccccCCCC---CCC-CcEEEEE
Confidence 7644444677777655422 222 6788873
No 197
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.23 E-value=4e-11 Score=99.03 Aligned_cols=83 Identities=24% Similarity=0.412 Sum_probs=72.3
Q ss_pred EEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccc
Q 007848 50 ELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHN 128 (587)
Q Consensus 50 eL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~ 128 (587)
+++ ++|+||+..+..+.+||||++++..... ...+|++++++.+|.|++.|.|.+.....+.|.|+|||.+..
T Consensus 2 ~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~--- 75 (85)
T PF00168_consen 2 TVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSF--- 75 (85)
T ss_dssp EEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSS---
T ss_pred EEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCC---
Confidence 444 6899999999889999999999987332 579999999999999999999998777777899999999976
Q ss_pred ccccccccccccccccee
Q 007848 129 VDVKTLKLVEQQFLGEAT 146 (587)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~ 146 (587)
+++++||++.
T Consensus 76 --------~~~~~iG~~~ 85 (85)
T PF00168_consen 76 --------GKDELIGEVK 85 (85)
T ss_dssp --------SSEEEEEEEE
T ss_pred --------CCCCEEEEEC
Confidence 6799999874
No 198
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.23 E-value=1.1e-10 Score=107.34 Aligned_cols=116 Identities=11% Similarity=0.111 Sum_probs=86.4
Q ss_pred ccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 200 SKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 200 ~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
.+.+.+.+++|++|+.++ +|||.+.+. + ..+.||.++.++.||.|+| |.|..- ..-..|.|.||+.
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld---~--~~vaRT~v~~~~~nP~W~E~F~f~~~---~~~~~l~v~v~k~ 76 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCLD---K--TLYARTTSKLKTDTLFWGEHFEFSNL---PPVSVITVNLYRE 76 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEEC---C--EEEEEEEEEcCCCCCcceeeEEecCC---CcccEEEEEEEEc
Confidence 356888999999999765 799999993 3 3567999999999999998 777532 1236799999865
Q ss_pred cCC----CCCceeEEEEEechhhhhccCCCceeEeecccccCC----CCcccccccEEE
Q 007848 279 NSN----GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGN----NNHKILNSQLFV 329 (587)
Q Consensus 279 d~~----~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k----~~~~~~~G~i~l 329 (587)
+.. .++++||.+.|++.++.......+||+++..+...+ ...+. .+.|+|
T Consensus 77 ~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~-~~~lri 134 (146)
T cd04013 77 SDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGE-SPSIRI 134 (146)
T ss_pred cCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCC-CCEEEE
Confidence 532 257899999999999986555567999988764321 01122 677777
No 199
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.20 E-value=5.7e-11 Score=107.26 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=76.8
Q ss_pred ccceeeeccccCCcCC--CCCC--CCcEEEEEEEcCCCceeeEEecceecCCCC--Cceee-ceEEeeec----------
Q 007848 202 TTTELILRCSDLDCKD--LFSR--NDPFLVISKIVESGTHIPVCKTEVLKNETK--PTWKS-VFLNIQQV---------- 264 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d--~~g~--sDPyv~v~~~~~~g~~~~~~kT~vik~tln--P~Wne-f~~~~~~l---------- 264 (587)
++.|.+++|++++..+ ..|. +||||++++.+. ....++|.+.++++| |+||+ |.|++...
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEe
Confidence 3678899999966544 4675 999999999653 345789999999999 99998 66666552
Q ss_pred -----------CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 265 -----------GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 265 -----------~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
.-....|.++|||+|.+++|++||+++++|..|.+
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~ 123 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR 123 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence 01257899999999999999999999999999964
No 200
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.20 E-value=1.5e-11 Score=130.94 Aligned_cols=115 Identities=21% Similarity=0.331 Sum_probs=92.0
Q ss_pred CCcccEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEE
Q 007848 43 LGLFSQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYD 121 (587)
Q Consensus 43 ~~~~~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D 121 (587)
+--+.+|.|+ ++|.+|.++|..|+|||||.+.+.. .+.||++|...|||+|+|.|.|++.. ....++++|||
T Consensus 291 skwsakitltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~~lnpvw~ekfhfechn-stdrikvrvwd 363 (1283)
T KOG1011|consen 291 SKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQELNPVWNEKFHFECHN-STDRIKVRVWD 363 (1283)
T ss_pred cccceeeEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhhccchhhhhheeeeecC-CCceeEEEEec
Confidence 3346789998 5789999999999999999998865 47899999999999999999999875 45699999999
Q ss_pred cCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
.|...++.--..++-.+|||||+..+.+..+.+ ...+|+.|..
T Consensus 364 ed~dlksklrqkl~resddflgqtvievrtlsg--emdvwynlek 406 (1283)
T KOG1011|consen 364 EDNDLKSKLRQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEK 406 (1283)
T ss_pred CcccHHHHHHHHhhhcccccccceeEEEEeccc--chhhhcchhh
Confidence 997522111113344679999999999888854 3568999965
No 201
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.18 E-value=5.7e-11 Score=144.67 Aligned_cols=103 Identities=21% Similarity=0.277 Sum_probs=84.4
Q ss_pred ccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 200 SKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 200 ~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
.+.+.|.+++|.||. +.+|.+||||++.+++. +..||++++++.||+||+ |.+.++.. +.+.+|+|+|||+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~-----~~~kTkvvk~~~nP~Wne~f~~~~~~p-~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNG-----PPRQTKVVSHSSSPEWKEGFTWAFDSP-PKGQKLHISCKSK 2050 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECCC-----CcccccccCCCCCCCcccceeeeecCC-CCCCceEEEEEec
Confidence 356889999999998 66899999999999642 256999999999999998 88777643 2357899999999
Q ss_pred cCCCCCceeEEEEEechhhhhccCCCceeEeec
Q 007848 279 NSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFL 311 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~ 311 (587)
|.+++ +.||.+++++.++........+|+|.+
T Consensus 2051 d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2051 NTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred CccCC-CCCceEEEEHHHHhcCceeeeeeecCc
Confidence 99965 599999999999986455556777764
No 202
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.16 E-value=8.5e-11 Score=97.05 Aligned_cols=84 Identities=29% Similarity=0.422 Sum_probs=70.6
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
|.+.+++|++|+..+..+..|||+++.+..... ..++|++++++.+|.|++ |.|++... ....|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~---~~~~T~~~~~~~~P~w~e~~~~~~~~~--~~~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES---TKYKTKVKKNTSNPVWNEEFEFPLDDP--DLDSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC---EEEEECCBSSBSSEEEEEEEEEEESHG--CGTEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee---eeeeeeeeeccccceeeeeeeeeeecc--cccceEEEEEECCCC
Confidence 457899999999999889999999999976422 579999999999999998 77775432 244599999999999
Q ss_pred CCCceeEEEE
Q 007848 282 GKHDLIGKVQ 291 (587)
Q Consensus 282 ~~dd~IG~~~ 291 (587)
+++++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 9899999974
No 203
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.06 E-value=3.6e-10 Score=137.88 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=82.6
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc-eeEEEEEEEEcCCCc
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV-VQTLVFRIYDVDTQF 126 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~-~q~L~~~V~D~D~~~ 126 (587)
+.++ ++|+||. +.++.+||||+|.+++ + +..||+++++|.||+|+|.|.|.+..+. .++|+++|||+|.+
T Consensus 1982 L~V~V~~a~nl~--~~~~~sdPyv~l~~g~--~---~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f- 2053 (2102)
T PLN03200 1982 LTVTIKRGNNLK--QSMGNTNAFCKLTLGN--G---PPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTF- 2053 (2102)
T ss_pred eEEEEeeccccc--cccCCCCCeEEEEECC--C---CcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCcc-
Confidence 4444 6899998 4578999999999975 2 3679999999999999999998776543 46899999999975
Q ss_pred cccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 127 HNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 127 ~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+ +|.||.++++|.+++......-||+|.+
T Consensus 2054 ----------~-kd~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2054 ----------G-KSSLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred ----------C-CCCCceEEEEHHHHhcCceeeeeeecCc
Confidence 3 4599999999999998777778999965
No 204
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=99.02 E-value=2.8e-10 Score=127.27 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=73.9
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|-+|.+.|..|++||||.|.+.. .....+++.+.+|+||+|.+.|.+.........|.+.|||+|..
T Consensus 620 v~A~~L~p~D~ng~adpYv~l~lGk----~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~------- 688 (1105)
T KOG1326|consen 620 VEAFSLQPSDGNGDADPYVKLLLGK----KRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLE------- 688 (1105)
T ss_pred EEeeeccccCCCCCcCceeeeeecc----chhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeecc-------
Confidence 7999999999999999999999965 22467899999999999999998887776666899999999976
Q ss_pred cccccccccccceeeecch
Q 007848 133 TLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~ 151 (587)
+.++.||+..++|..
T Consensus 689 ----~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 ----AQDEKIGETTIDLEN 703 (1105)
T ss_pred ----cccchhhceehhhhh
Confidence 789999999998854
No 205
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=98.98 E-value=2.1e-09 Score=97.11 Aligned_cols=89 Identities=18% Similarity=0.338 Sum_probs=71.8
Q ss_pred EEEeCCCCC--CCCCC--CCcEEEEEEecCCCceeeEeeeeeecCCCC--CceeeeEEEEeec-----------------
Q 007848 53 FSAADLRDR--DVLSK--SDPMLVVYMKARDGALVEVGRTEVVLNSLN--PTWITKHIITYQF----------------- 109 (587)
Q Consensus 53 v~arnL~~~--D~~gk--sDPyv~v~~~~~~~~~~~~~rTevi~~tlN--P~w~e~f~~~~~~----------------- 109 (587)
.+|+|++.. +..|. |||||++++.+. ....++|.|..+++| |.||+.|.|.+..
T Consensus 7 w~~~~v~~~~~~~~g~~~sD~yVK~~L~~~---~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~~~ 83 (133)
T cd08374 7 WNTRDVLNDDTNITGEKMSDIYVKGWLDGL---EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHFWS 83 (133)
T ss_pred EECcCCcccccccCCccccCeEEEEEEccC---cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccccc
Confidence 578996544 44674 999999999763 236899999999999 9999999987554
Q ss_pred ----Cc--eeEEEEEEEEcCCCccccccccccccccccccceeeecchhhcc
Q 007848 110 ----EV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (587)
Q Consensus 110 ----e~--~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~ 155 (587)
+. ...|.++|||.|.. +++|+||++.++|..+..+
T Consensus 84 ~~~~e~~~~~~L~lqvwD~D~~-----------s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 84 LDETEYKIPPKLTLQVWDNDKF-----------SPDDFLGSLELDLSILPRP 124 (133)
T ss_pred cCcceEecCcEEEEEEEECccc-----------CCCCcceEEEEEhhhcccc
Confidence 22 24899999999976 7899999999999987643
No 206
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.96 E-value=3.7e-09 Score=88.85 Aligned_cols=96 Identities=31% Similarity=0.439 Sum_probs=79.7
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|......+.++|||.+++.+ ...++|+++.+++||.|++.|.+.........|.|+|||.+..
T Consensus 6 ~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~------- 73 (102)
T cd00030 6 IEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRF------- 73 (102)
T ss_pred EeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCC-------
Confidence 6889998877778999999999964 2589999999999999999999887764567899999999865
Q ss_pred cccccccccccceeeecchhh-ccCCeeEEEEc
Q 007848 133 TLKLVEQQFLGEATCTLSQIV-TRKNRSLTLDL 164 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~-~~~~~~l~~~L 164 (587)
+.+.+||.+.+++.++. .......|++|
T Consensus 74 ----~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 74 ----SKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred ----CCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 56899999999999998 44445556543
No 207
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.92 E-value=5.9e-09 Score=88.10 Aligned_cols=90 Identities=30% Similarity=0.436 Sum_probs=76.0
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++|++|...+..+..+|||++++.... ....+|+++.++.||.|++.|.|.......+.|+|+|||.+..
T Consensus 7 ~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~------- 76 (101)
T smart00239 7 ISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRF------- 76 (101)
T ss_pred EEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCc-------
Confidence 678999988876789999999997621 3589999999999999999999887655478999999999865
Q ss_pred cccccccccccceeeecchhhccC
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRK 156 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~ 156 (587)
+.+.++|.+.+++.++....
T Consensus 77 ----~~~~~~G~~~~~l~~~~~~~ 96 (101)
T smart00239 77 ----GRDDFIGQVTIPLSDLLLGG 96 (101)
T ss_pred ----cCCceeEEEEEEHHHcccCc
Confidence 57899999999999886543
No 208
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=98.90 E-value=1.1e-08 Score=86.37 Aligned_cols=92 Identities=28% Similarity=0.403 Sum_probs=76.3
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+.+.+++|++|......+..+||+++.+...+ ...++|+++.++.||.|++ |.|++.... ...|.|+|||.+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~---~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP---KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRF 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc---cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCc
Confidence 44678899999988776789999999996532 3479999999999999997 777765321 68999999999988
Q ss_pred CCCceeEEEEEechhhhh
Q 007848 282 GKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 282 ~~dd~IG~~~i~l~~l~~ 299 (587)
+.+.++|.+.+++.++..
T Consensus 77 ~~~~~~G~~~~~l~~~~~ 94 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLL 94 (101)
T ss_pred cCCceeEEEEEEHHHccc
Confidence 888999999999999853
No 209
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=98.89 E-value=2.9e-09 Score=114.36 Aligned_cols=129 Identities=29% Similarity=0.441 Sum_probs=99.9
Q ss_pred cccEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEE---EeecCceeEEEEEEEE
Q 007848 45 LFSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHII---TYQFEVVQTLVFRIYD 121 (587)
Q Consensus 45 ~~~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~---~~~~e~~q~L~~~V~D 121 (587)
...++++.++|++|.++|.+++||||..++-..+++.|...+|||++++|+||.|.+...= .+..+...++.+.+||
T Consensus 135 ~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~i~~~~l~~~~~~~~~~i~~~d 214 (529)
T KOG1327|consen 135 DNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFSISLQSLCSKDGNRPIQIECYD 214 (529)
T ss_pred cCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccccchhhhcccCCCCceEEEEec
Confidence 3478999999999999999999999999998877889999999999999999999986421 1333445688999999
Q ss_pred cCCCccccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCCCcccEEEee
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRPKHCGKLTVH 193 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~ 193 (587)
+|.. +++++||++..++.++.. .++...+++.+ +++..+++ +.+.+|++.+.
T Consensus 215 ~~~~-----------~~~~~ig~~~tt~~~~~~-~~~~~~~~~~~------~~~~~~~k--~~k~~g~~~l~ 266 (529)
T KOG1327|consen 215 YDSN-----------GKHDLIGKFQTTLSELQE-PGSPNQIMLIN------PKKKAKKK--SYKNSGQLILD 266 (529)
T ss_pred cCCC-----------CCcCceeEecccHHHhcc-cCCcccccccC------hhhhhhhh--cccccceEEeh
Confidence 9976 789999999999999975 44444455533 33322222 34667877764
No 210
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=98.87 E-value=1.8e-08 Score=84.59 Aligned_cols=88 Identities=25% Similarity=0.443 Sum_probs=74.5
Q ss_pred ceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCC
Q 007848 204 TELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNG 282 (587)
Q Consensus 204 ~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~ 282 (587)
.+.+++|++|+........+||+++.+.. ...++|+++.++.||.|++ |.+++... ....|.|+|||++..+
T Consensus 2 ~v~i~~~~~l~~~~~~~~~~~~v~v~~~~-----~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~ 74 (102)
T cd00030 2 RVTVIEARNLPAKDLNGKSDPYVKVSLGG-----KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS 74 (102)
T ss_pred EEEEEeeeCCCCcCCCCCCCcEEEEEecc-----CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC
Confidence 46788999998877777899999999954 2478999999999999998 77776531 3678999999999888
Q ss_pred CCceeEEEEEechhhh
Q 007848 283 KHDLIGKVQKSLADLE 298 (587)
Q Consensus 283 ~dd~IG~~~i~l~~l~ 298 (587)
++.+||.+.+++.++.
T Consensus 75 ~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 75 KDDFLGEVEIPLSELL 90 (102)
T ss_pred CCceeEEEEEeHHHhh
Confidence 8899999999999996
No 211
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=5e-09 Score=112.05 Aligned_cols=113 Identities=14% Similarity=0.274 Sum_probs=87.2
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+...+++|.+|..+|..|+|||||.+.+.. .+.||+.|..++||+||| |.|..+ +....|++.|||.|.
T Consensus 296 kitltvlcaqgl~akdktg~sdpyvt~qv~k------tkrrtrti~~~lnpvw~ekfhfech---nstdrikvrvwded~ 366 (1283)
T KOG1011|consen 296 KITLTVLCAQGLIAKDKTGKSDPYVTAQVGK------TKRRTRTIHQELNPVWNEKFHFECH---NSTDRIKVRVWDEDN 366 (1283)
T ss_pred eeEEeeeecccceecccCCCCCCcEEEeecc------cchhhHhhhhccchhhhhheeeeec---CCCceeEEEEecCcc
Confidence 4567799999999999999999999998743 367999999999999999 888876 446789999999885
Q ss_pred C-----------CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 N-----------GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~-----------~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
. .+|||+|+..|.+..|. ..-.-||.| .|+..++. ++|.|+|.
T Consensus 367 dlksklrqkl~resddflgqtvievrtls--gemdvwynl---ekrtdksa--vsgairlh 420 (1283)
T KOG1011|consen 367 DLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNL---EKRTDKSA--VSGAIRLH 420 (1283)
T ss_pred cHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcch---hhccchhh--ccceEEEE
Confidence 3 36899999999998883 222335544 33222322 48999983
No 212
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.70 E-value=4.5e-09 Score=113.87 Aligned_cols=128 Identities=22% Similarity=0.266 Sum_probs=94.8
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCc-------------------------eeeEeeeeeecCCCCCceeeeEEEEe
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGA-------------------------LVEVGRTEVVLNSLNPTWITKHIITY 107 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~-------------------------~~~~~rTevi~~tlNP~w~e~f~~~~ 107 (587)
.+|+||.++|..|.||||+.+.+.+...+ -+.+.-|+|++.||||.|+|.|.|++
T Consensus 121 ~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW~EkF~F~I 200 (1103)
T KOG1328|consen 121 LEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKWSEKFQFTI 200 (1103)
T ss_pred HHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcchhhheeeeh
Confidence 57999999999999999999887652111 12456799999999999999999998
Q ss_pred ecCceeEEEEEEEEcCCCccccc----------c---------------ccccccccccccceeeecchhhccCCeeEEE
Q 007848 108 QFEVVQTLVFRIYDVDTQFHNVD----------V---------------KTLKLVEQQFLGEATCTLSQIVTRKNRSLTL 162 (587)
Q Consensus 108 ~~e~~q~L~~~V~D~D~~~~~~~----------~---------------~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~ 162 (587)
.+-....+.+.|||+|...+..+ + ..++-..|||||++.++|++|... |-..|+
T Consensus 201 eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~~-Gld~WF 279 (1103)
T KOG1328|consen 201 EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPPD-GLDQWF 279 (1103)
T ss_pred hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCcc-hHHHHh
Confidence 87777899999999986421110 0 011123389999999999999653 566899
Q ss_pred EccccccccccccccCCCCCCCCcccEEEeec
Q 007848 163 DLVRREETITPITEESNPSNRPKHCGKLTVHA 194 (587)
Q Consensus 163 ~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~ 194 (587)
.|+. ++. +.+..|.+++.+
T Consensus 280 kLep-----------RS~--~S~VqG~~~Lkl 298 (1103)
T KOG1328|consen 280 KLEP-----------RSD--KSKVQGQVKLKL 298 (1103)
T ss_pred ccCc-----------ccc--cccccceEEEEE
Confidence 9976 322 346678877754
No 213
>PLN02223 phosphoinositide phospholipase C
Probab=98.69 E-value=1.7e-07 Score=101.79 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=79.5
Q ss_pred EEEEE-EEEeCCC-C----CCCCCCCCcEEEEEEec-CCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEE
Q 007848 48 QIELS-FSAADLR-D----RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIY 120 (587)
Q Consensus 48 ~ieL~-v~arnL~-~----~D~~gksDPyv~v~~~~-~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~ 120 (587)
.+.+. +++.+|+ + .+..+..||||+|.+.+ ..+. ...||.+..|+.||.|+|.|.|.+..++.-.|+|+||
T Consensus 410 ~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~--~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~ 487 (537)
T PLN02223 410 ILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDE--KIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY 487 (537)
T ss_pred EEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCc--ceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence 34454 5777774 1 13456789999999976 1122 3567888888999999999999998888888999999
Q ss_pred EcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
|.|.. ++++|+|+..+++..|..+- ...+|.+
T Consensus 488 D~D~~-----------~~ddfiGQ~~LPv~~Lr~Gy---R~VpL~~ 519 (537)
T PLN02223 488 DYEVS-----------TADAFCGQTCLPVSELIEGI---RAVPLYD 519 (537)
T ss_pred ecCCC-----------CCCcEEEEEecchHHhcCCc---eeEeccC
Confidence 99975 67999999999999997643 4457755
No 214
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.63 E-value=4.9e-08 Score=109.76 Aligned_cols=217 Identities=19% Similarity=0.198 Sum_probs=135.4
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEE---eec------CceeEEEEEEEEcC
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT---YQF------EVVQTLVFRIYDVD 123 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~---~~~------e~~q~L~~~V~D~D 123 (587)
-+|+.|..+|..+.||||+.|...+ +...|+++.+||||.|+++..|. +.. .....+.|+|||.|
T Consensus 213 yQar~L~a~dk~~~sdp~a~v~f~~------qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d 286 (1105)
T KOG1326|consen 213 YQARALGAPDKDDESDPDAAVEFCG------QSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD 286 (1105)
T ss_pred HHHHhhcCCCcccCCCchhhhhccc------ccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence 4689999999999999999998865 58899999999999999998774 222 22347889999999
Q ss_pred CCccccccccccccccccccceeeecchhhccCCeeEEEEccccccc-----ccccc-ccC--CCCCCCCcccEEEeecc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREET-----ITPIT-EES--NPSNRPKHCGKLTVHAE 195 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~-----~~~~~-~~~--~~~~~~~~~G~I~l~~~ 195 (587)
+. +.++|+|+..+...-++. ++...|+++...... ++... +.. .........+-+.+--.
T Consensus 287 r~-----------g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~vp~ 354 (1105)
T KOG1326|consen 287 RS-----------GINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLVPK 354 (1105)
T ss_pred hh-----------chHHhhcccccceEEEec-CCccceEEeecccccccchhHHHHHHhhcCCCCCCCcccccceecccc
Confidence 87 899999998776544433 556678887541000 00000 000 00000000111111000
Q ss_pred ee---ccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecC-CCCCceee-ceEEeeec---CCC
Q 007848 196 EC---INSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKN-ETKPTWKS-VFLNIQQV---GSK 267 (587)
Q Consensus 196 ~~---~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~-tlnP~Wne-f~~~~~~l---~~~ 267 (587)
.+ .....+.++.+.-+|+.........-|-+.+....+ ..+|.++.+ -.||.+.. +....-.+ ..+
T Consensus 355 ~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~g~e------~v~s~~I~~~k~npnf~s~~~~~~v~lpd~e~Y 428 (1105)
T KOG1326|consen 355 KIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEFGGE------RVSSFSIFNRKKNPNFPSRVLGRLVILPDEELY 428 (1105)
T ss_pred CCCcceeeeeeehhhhhhcccccccccccCCcceeEeeCCc------eEeeeeehhhhhCCCCceeEEEEEEeccchHhh
Confidence 00 011223344556677776666666778777777432 334555543 46887775 22111111 345
Q ss_pred CCcEEEEEEeccCCCCCceeEEEEEe
Q 007848 268 DSPLIIECFNFNSNGKHDLIGKVQKS 293 (587)
Q Consensus 268 ~~~L~i~V~D~d~~~~dd~IG~~~i~ 293 (587)
-.++.++|.|.+.+++-...|.|.+.
T Consensus 429 ~ppl~akvvd~~~fg~~~v~g~c~i~ 454 (1105)
T KOG1326|consen 429 MPPLNAKVVDLRQFGRMEVVGQCKIL 454 (1105)
T ss_pred CccceeEEEecccccceeehhhhcch
Confidence 77999999999999999999999775
No 215
>PLN02952 phosphoinositide phospholipase C
Probab=98.59 E-value=4e-07 Score=100.89 Aligned_cols=104 Identities=13% Similarity=0.231 Sum_probs=79.8
Q ss_pred cEEEEE-EEEeCCCC------CCCCCCCCcEEEEEEec-CCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEE
Q 007848 47 SQIELS-FSAADLRD------RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFR 118 (587)
Q Consensus 47 ~~ieL~-v~arnL~~------~D~~gksDPyv~v~~~~-~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~ 118 (587)
..+.+. +++.+|+. .|..+..||||+|.+-+ ..+. ...||+++.+|.||.|++.|.|.+..++.-.|+|+
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~--~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~ 547 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADN--AKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIE 547 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCC--cceeeeeccCCCCcccCCeeEEEEEcCCccEEEEE
Confidence 345554 56777642 23334569999999875 1111 46799999999999999999998887777789999
Q ss_pred EEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 119 V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
|||+|.. +.++|+|++.+++..|..+. .+.+|.+
T Consensus 548 V~D~D~~-----------~~ddfiGq~~lPv~~Lr~Gy---R~VpL~~ 581 (599)
T PLN02952 548 VREYDMS-----------EKDDFGGQTCLPVSELRPGI---RSVPLHD 581 (599)
T ss_pred EEecCCC-----------CCCCeEEEEEcchhHhcCCc---eeEeCcC
Confidence 9999975 67999999999999997643 4778865
No 216
>PLN02223 phosphoinositide phospholipase C
Probab=98.57 E-value=2.5e-07 Score=100.58 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=77.3
Q ss_pred cccceeeeccccCCc-----CCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEE
Q 007848 201 KTTTELILRCSDLDC-----KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIE 274 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~-----~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~ 274 (587)
..+.+.|+.|.+++. .+.....||||+|.+.+-... ...+||.+..|+.||+||+ |.|++.. ..-..|.|+
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D-~~~~kT~v~nNg~nPvWne~F~F~i~~--PELAlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHD-EKIMKTTVKNNEWKPTWGEEFTFPLTY--PDLALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCC-cceeEEEeCCCCcCceecceeEEEEEc--cCceEEEEE
Confidence 346678899998741 133456899999999652111 1246787777789999998 7777652 224578999
Q ss_pred EEeccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 275 CFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 275 V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
|||+|..++++|||+..+++..|+. +-+..+|.+.
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~---GyR~VpL~~~ 520 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIE---GIRAVPLYDE 520 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcC---CceeEeccCC
Confidence 9999998889999999999999964 2345566553
No 217
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.55 E-value=3.1e-08 Score=107.61 Aligned_cols=111 Identities=23% Similarity=0.300 Sum_probs=92.1
Q ss_pred ccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCc--eeeEEecceecCCCCCceee-ceEEeee
Q 007848 187 CGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGT--HIPVCKTEVLKNETKPTWKS-VFLNIQQ 263 (587)
Q Consensus 187 ~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~--~~~~~kT~vik~tlnP~Wne-f~~~~~~ 263 (587)
.|.+.+++.+......+++-++.|+++.+.|.+|.|||||+|.+.+. .. ..++.||+|+++|+||+|+| |+|.+..
T Consensus 933 fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~-~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~ 1011 (1103)
T KOG1328|consen 933 FGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPK-FRFPAVPVQKTKVVSRTLNPVFDETFEFSVPP 1011 (1103)
T ss_pred CCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccc-cccccchhhhhhhhhccccchhhhheeeecCc
Confidence 57777777777778889999999999999999999999999999663 11 15688999999999999999 6655532
Q ss_pred --cCCCCCcEEEEEEeccCCCCCceeEEEEEechhhh
Q 007848 264 --VGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 264 --l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~ 298 (587)
-......|.|+|+|+|-...+||-|++-+.|.++-
T Consensus 1012 e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1012 EPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred cccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 22225689999999999999999999999988884
No 218
>PLN02952 phosphoinositide phospholipase C
Probab=98.53 E-value=5.6e-07 Score=99.77 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=78.0
Q ss_pred cccceeeeccccCCc------CCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEE
Q 007848 201 KTTTELILRCSDLDC------KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLII 273 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~------~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i 273 (587)
..+.+.|+.|.+|+. .+.+...||||+|.+.+-... ...+||++++++.||+|++ |.|++.. ..-.-|.|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D-~~~~kTkvi~nN~nPvWnE~F~F~i~~--PELAllrf 546 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPAD-NAKKKTKIIEDNWYPAWNEEFSFPLTV--PELALLRI 546 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCC-CcceeeeeccCCCCcccCCeeEEEEEc--CCccEEEE
Confidence 457778999988742 123345699999998652111 2366999999999999998 7766552 22457899
Q ss_pred EEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 274 ECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 274 ~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
+|||+|..+.++|+|++.+++..|+. + -++.+|.+.
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~--G-yR~VpL~~~ 582 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRP--G-IRSVPLHDK 582 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcC--C-ceeEeCcCC
Confidence 99999998889999999999999965 2 246666543
No 219
>PLN02228 Phosphoinositide phospholipase C
Probab=98.51 E-value=7.2e-07 Score=98.34 Aligned_cols=127 Identities=20% Similarity=0.289 Sum_probs=87.6
Q ss_pred ccceeeeccccCCc---C---CCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCce-ee-ceEEeeecCCCCCcEEE
Q 007848 202 TTTELILRCSDLDC---K---DLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTW-KS-VFLNIQQVGSKDSPLII 273 (587)
Q Consensus 202 ~l~v~vi~a~~L~~---~---d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~W-ne-f~~~~~~l~~~~~~L~i 273 (587)
.+.+.|++|.+|+. . +.....||||+|.+.+-... ...+||++++++.||+| ++ |.|++.. ..-.-|.|
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D-~~~~rTk~~~n~~nP~W~~e~f~F~~~~--pELA~lRf 508 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRD-TVSYRTETAVDQWFPIWGNDEFLFQLRV--PELALLWF 508 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCC-CCcceeeccCCCCCceECCCeEEEEEEc--CceeEEEE
Confidence 56778999998731 1 23345799999998652111 23579999999999999 76 7766542 22458899
Q ss_pred EEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEeEeeeeeeeee
Q 007848 274 ECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVDKFSESVQYTF 340 (587)
Q Consensus 274 ~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~~~~~~~~~sF 340 (587)
+|+|+|..+.++|||++.+++..|+. + -+..+|.+.+. + .-...+|.+ ++.+...++|
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~~Lr~--G-YR~VpL~~~~G--~---~l~~atLfv-~~~~~~~~~~ 566 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLPELKS--G-VRAVRLHDRAG--K---AYKNTRLLV-SFALDPPYTF 566 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchhHhhC--C-eeEEEccCCCC--C---CCCCeEEEE-EEEEcCcccc
Confidence 99999988889999999999999964 2 23455555332 1 111333444 6777777776
No 220
>PLN02270 phospholipase D alpha
Probab=98.49 E-value=1.8e-06 Score=97.72 Aligned_cols=190 Identities=14% Similarity=0.287 Sum_probs=127.9
Q ss_pred EEEE-EEEeCCCCCCC------------------CCCCCcEEEEEEecCCCceeeEeeeeeecCC-CCCceeeeEEEEee
Q 007848 49 IELS-FSAADLRDRDV------------------LSKSDPMLVVYMKARDGALVEVGRTEVVLNS-LNPTWITKHIITYQ 108 (587)
Q Consensus 49 ieL~-v~arnL~~~D~------------------~gksDPyv~v~~~~~~~~~~~~~rTevi~~t-lNP~w~e~f~~~~~ 108 (587)
++++ ++|++|+++|. .+.|||||.|.+.. ..++||.++.+. .||.|+|.|.+.+.
T Consensus 10 l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 10 LHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred eEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceEEeec
Confidence 4555 57888876421 25789999999964 269999999885 69999999988765
Q ss_pred cCceeEEEEEEEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccccccccccccccCCCCCCC-Ccc
Q 007848 109 FEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVRREETITPITEESNPSNRP-KHC 187 (587)
Q Consensus 109 ~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~~ 187 (587)
-. ...+.|.|-|.|.. ...+||.+.++..+|+....-.-|+++.+ ..+ +. +..
T Consensus 85 h~-~~~v~f~vkd~~~~------------g~~~ig~~~~p~~~~~~g~~i~~~~~~~~-----------~~~--~p~~~~ 138 (808)
T PLN02270 85 HM-ASNIIFTVKDDNPI------------GATLIGRAYIPVEEILDGEEVDRWVEILD-----------NDK--NPIHGG 138 (808)
T ss_pred cC-cceEEEEEecCCcc------------CceEEEEEEEEHHHhcCCCccccEEeccC-----------CCC--CcCCCC
Confidence 43 35899999998865 45699999999999988766677999865 111 11 223
Q ss_pred cEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCc--------------
Q 007848 188 GKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPT-------------- 253 (587)
Q Consensus 188 G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~-------------- 253 (587)
..|++++.+.+-..... -.+.+...+..|.+..|+.... |..+..|+-..+.++.-|.
T Consensus 139 ~~~~~~~~f~~~~~~~~----~~~gv~~~~~~gvp~t~f~~r~----g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~c 210 (808)
T PLN02270 139 SKIHVKLQYFEVTKDRN----WGRGIRSAKFPGVPYTFFSQRQ----GCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRC 210 (808)
T ss_pred CEEEEEEEEEEcccCcc----hhcccCCcCcCCCCCcccccCC----CCeeEEeccccCCCCCCCccccCCCcccchhhh
Confidence 47888877655322211 2233333456677777776654 4457788887777766553
Q ss_pred eeeceEEeeecCCCCCcEEEEEEeccC
Q 007848 254 WKSVFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 254 Wnef~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
|..+. ..+......|.|.-|+.+.
T Consensus 211 wedi~---~AI~~Ar~~IyI~GW~~d~ 234 (808)
T PLN02270 211 WEDVF---DAITNAKHLIYITGWSVYT 234 (808)
T ss_pred HHHHH---HHHHhhhcEEEEEEeecCC
Confidence 22211 1112335678888888775
No 221
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=98.49 E-value=1.1e-07 Score=108.12 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=99.3
Q ss_pred CcccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceeec---e-EE
Q 007848 185 KHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSV---F-LN 260 (587)
Q Consensus 185 ~~~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wnef---~-~~ 260 (587)
+..|+|.++++|. .+.+.+++..+++|+-..-...+||||+.|+.. +.++..+.||+++++|.||.|||. . ++
T Consensus 1510 ~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlP-dp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1510 EIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLP-DPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred ccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecC-CchHhhhhhhccccccCCCchhhheeecCCc
Confidence 5567999998874 678999999999997766666799999999988 456677899999999999999992 2 45
Q ss_pred eeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhccCCCceeEe
Q 007848 261 IQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNL 309 (587)
Q Consensus 261 ~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l 309 (587)
...+. ++.|++.||..+....+.++|.+.++|.++...+...+||.|
T Consensus 1587 ~~~l~--qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1587 KEILQ--QRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hhhhh--hheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 44332 589999999999888889999999999999766666678776
No 222
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=98.44 E-value=4.1e-06 Score=78.78 Aligned_cols=147 Identities=14% Similarity=0.137 Sum_probs=105.9
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 429 (587)
.++++.+|.|+| |.. ...+.|..++..++..+..+..+.+++|+.... .. ++.
T Consensus 3 ~~v~~vlD~S~S------------M~~----~~~~~~~~al~~~l~~l~~~~~~~l~~Fs~~~~-~~----~~~------ 55 (171)
T cd01461 3 KEVVFVIDTSGS------------MSG----TKIEQTKEALLTALKDLPPGDYFNIIGFSDTVE-EF----SPS------ 55 (171)
T ss_pred ceEEEEEECCCC------------CCC----hhHHHHHHHHHHHHHhCCCCCEEEEEEeCCCce-ee----cCc------
Confidence 578999999997 321 236777778888888887777899999988621 00 110
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 007848 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (587)
Q Consensus 430 p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlS 509 (587)
+...+.+. ++...+.+..+...|-|++...|..+.+..+. ....--++++||||..++-.++.+++.++.+.++.
T Consensus 56 ~~~~~~~~-~~~~~~~l~~~~~~g~T~l~~al~~a~~~l~~----~~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~ 130 (171)
T cd01461 56 SVSATAEN-VAAAIEYVNRLQALGGTNMNDALEAALELLNS----SPGSVPQIILLTDGEVTNESQILKNVREALSGRIR 130 (171)
T ss_pred ceeCCHHH-HHHHHHHHHhcCCCCCcCHHHHHHHHHHhhcc----CCCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCce
Confidence 11122222 23334556667779999999999999887653 12345799999999998888888999888877999
Q ss_pred EEEEecCC-CCchhhhhccc
Q 007848 510 ILIIGVGG-ADFKEMEILDA 528 (587)
Q Consensus 510 iiiVGvG~-~~f~~m~~ld~ 528 (587)
|..||+|. .+...|+.+-.
T Consensus 131 i~~i~~g~~~~~~~l~~ia~ 150 (171)
T cd01461 131 LFTFGIGSDVNTYLLERLAR 150 (171)
T ss_pred EEEEEeCCccCHHHHHHHHH
Confidence 99999996 47778888873
No 223
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.43 E-value=1.7e-06 Score=95.80 Aligned_cols=104 Identities=14% Similarity=0.198 Sum_probs=79.3
Q ss_pred cEEEEE-EEEeCCCC------CCCCCCCCcEEEEEEec-CCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEE
Q 007848 47 SQIELS-FSAADLRD------RDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFR 118 (587)
Q Consensus 47 ~~ieL~-v~arnL~~------~D~~gksDPyv~v~~~~-~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~ 118 (587)
..+.+. +++.+++. .+..+..||||+|.+-+ ..+. ...||++..|+.||.|++.|.|.+..++.-.|+|+
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~--~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~ 546 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDE--VMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVE 546 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCC--cccceeccCCCCCCccCCeeEEEEEcCceeEEEEE
Confidence 345554 46676531 13345679999999875 1122 35699999999999999999999888888899999
Q ss_pred EEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 119 V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
|+|.|.. ++++|+|+..+++..|..+- ...+|.+
T Consensus 547 V~d~d~~-----------~~ddfiGQ~~lPv~~Lr~Gy---R~V~L~~ 580 (598)
T PLN02230 547 VHEHDIN-----------EKDDFGGQTCLPVSEIRQGI---HAVPLFN 580 (598)
T ss_pred EEECCCC-----------CCCCEEEEEEcchHHhhCcc---ceEeccC
Confidence 9999975 68999999999999997643 3457755
No 224
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.43 E-value=3.8e-07 Score=99.50 Aligned_cols=115 Identities=16% Similarity=0.193 Sum_probs=89.5
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccC
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.+.+.+.+|+||+..+..|.+|||+.|.+.++ .++||.++.+++.|.|.| |.+.+. ..-+.|.|=|||.|
T Consensus 6 sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E-----~v~RT~tv~ksL~PF~gEe~~~~iP---~~F~~l~fYv~D~d- 76 (800)
T KOG2059|consen 6 SLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQE-----EVCRTATVEKSLCPFFGEEFYFEIP---RTFRYLSFYVWDRD- 76 (800)
T ss_pred ceeEEEeecccCCCCCCCCCcCcceEEeecch-----hhhhhhhhhhhcCCccccceEEecC---cceeeEEEEEeccc-
Confidence 46677889999999999999999999999553 589999999999999998 443332 11468999999999
Q ss_pred CCCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEEe
Q 007848 281 NGKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
.++|+.||.+.+.-++|..-.+...|+.|.--.. . ..+.|.|+|.
T Consensus 77 ~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~----d-sEVQG~v~l~ 121 (800)
T KOG2059|consen 77 LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDP----D-SEVQGKVHLE 121 (800)
T ss_pred cccccccceeeeeHHHHhhCCCCccceeccccCC----C-hhhceeEEEE
Confidence 8999999999999999975444445666632211 1 1348999984
No 225
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.42 E-value=6.6e-07 Score=95.11 Aligned_cols=91 Identities=24% Similarity=0.347 Sum_probs=76.9
Q ss_pred ccceeeeccccCCcCCCC-CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee--ceEEeeecCCCCCcEEEEEEec
Q 007848 202 TTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS--VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~-g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne--f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
.+-|.+..||+||-+|.. ...|.||++.+.+. .+||.|..+++||.||. |.|.++.-.-.+.+|+|.+.||
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n~------t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~ 77 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFANT------TFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDH 77 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEeccc------ceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecc
Confidence 455667889999999954 46799999999653 79999999999999997 7777765433478999999999
Q ss_pred cCCCCCceeEEEEEechhhh
Q 007848 279 NSNGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~ 298 (587)
|..+.+|-||.+.++++-|.
T Consensus 78 dtysandaigkv~i~idpl~ 97 (1169)
T KOG1031|consen 78 DTYSANDAIGKVNIDIDPLC 97 (1169)
T ss_pred cccccccccceeeeccChHH
Confidence 99999999999999999885
No 226
>PLN02230 phosphoinositide phospholipase C 4
Probab=98.38 E-value=1.3e-06 Score=96.84 Aligned_cols=106 Identities=17% Similarity=0.175 Sum_probs=77.9
Q ss_pred cccceeeeccccCCc------CCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEE
Q 007848 201 KTTTELILRCSDLDC------KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLII 273 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~------~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i 273 (587)
..+.+.|+.|.+++. .+.+...||||+|.+.+-... ....||++..++.||+||+ |.|++.. ..-..|.|
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D-~~~~kT~v~~n~~nP~Wneef~F~l~v--PELAllRf 545 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVD-EVMEKTKIEYDTWTPIWNKEFIFPLAV--PELALLRV 545 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCC-CcccceeccCCCCCCccCCeeEEEEEc--CceeEEEE
Confidence 456778899998642 133445799999999652111 1246888888999999998 7776552 22568999
Q ss_pred EEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 274 ECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 274 ~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
+|+|+|..++++|||+..+++..|+. + -+..+|.+.
T Consensus 546 ~V~d~d~~~~ddfiGQ~~lPv~~Lr~--G-yR~V~L~~~ 581 (598)
T PLN02230 546 EVHEHDINEKDDFGGQTCLPVSEIRQ--G-IHAVPLFNR 581 (598)
T ss_pred EEEECCCCCCCCEEEEEEcchHHhhC--c-cceEeccCC
Confidence 99999998899999999999999965 2 235566553
No 227
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=98.37 E-value=5.1e-06 Score=78.04 Aligned_cols=152 Identities=24% Similarity=0.278 Sum_probs=106.8
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
..+++.||-|.|.+ ......+...+..++..+.. +.++-+++|+.. ...-+++.
T Consensus 2 ~~v~l~vD~S~SM~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~ii~f~~~-----~~~~~~~~-- 58 (177)
T smart00327 2 LDVVFLLDGSGSMG----------------PNRFEKAKEFVLKLVEQLDIGPDGDRVGLVTFSDD-----ATVLFPLN-- 58 (177)
T ss_pred ccEEEEEeCCCccc----------------hHHHHHHHHHHHHHHHhcCCCCCCcEEEEEEeCCC-----ceEEEccc--
Confidence 46899999999732 13344555555555555544 778999999985 11223322
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhc-cCCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA-NHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~-~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 505 (587)
...+.+.+........+. ..|.+.+...|+.+.+....... .......+++|+|||...|.+.+.+.+..+..
T Consensus 59 ----~~~~~~~~~~~i~~~~~~--~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~iviitDg~~~~~~~~~~~~~~~~~ 132 (177)
T smart00327 59 ----DSRSKDALLEALASLSYK--LGGGTNLGAALQYALENLFSKSAGSRRGAPKVLILITDGESNDGGDLLKAAKELKR 132 (177)
T ss_pred ----ccCCHHHHHHHHHhcCCC--CCCCchHHHHHHHHHHHhcCcCCCCCCCCCeEEEEEcCCCCCCCccHHHHHHHHHH
Confidence 244566666655544333 57889999999999988753211 12233689999999999876777888888888
Q ss_pred CCeEEEEEecCCC-CchhhhhcccCC
Q 007848 506 LPLSILIIGVGGA-DFKEMEILDADK 530 (587)
Q Consensus 506 lPlSiiiVGvG~~-~f~~m~~ld~d~ 530 (587)
.++.|++||+|+. +...|+.|....
T Consensus 133 ~~i~i~~i~~~~~~~~~~l~~~~~~~ 158 (177)
T smart00327 133 SGVKVFVVGVGNDVDEEELKKLASAP 158 (177)
T ss_pred CCCEEEEEEccCccCHHHHHHHhCCC
Confidence 8899999999998 999999999554
No 228
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=98.35 E-value=4.7e-06 Score=79.97 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=103.6
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
+.+++.||-|+| |.. .+.+.++...+..+++.+. ++-.+-++.|+.. +.-.+++...
T Consensus 1 ~Dv~~vlD~SgS------------m~~---~~~~~~~k~~~~~~~~~~~~~~~~~~vglv~Fs~~-----~~~~~~l~~~ 60 (186)
T cd01471 1 LDLYLLVDGSGS------------IGY---SNWVTHVVPFLHTFVQNLNISPDEINLYLVTFSTN-----AKELIRLSSP 60 (186)
T ss_pred CcEEEEEeCCCC------------ccc---hhhHHHHHHHHHHHHHhcccCCCceEEEEEEecCC-----ceEEEECCCc
Confidence 368899999996 432 2336677777777777764 2346888889875 1123555432
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCC
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDL 506 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~l 506 (587)
. ....+.+.+.-+........+|.|++++.|+.|.+............-.++++||||..++..++.++..++-..
T Consensus 61 ~----~~~~~~~~~~i~~l~~~~~~~G~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~a~~l~~~ 136 (186)
T cd01471 61 N----STNKDLALNAIRALLSLYYPNGSTNTTSALLVVEKHLFDTRGNRENAPQLVIIMTDGIPDSKFRTLKEARKLRER 136 (186)
T ss_pred c----ccchHHHHHHHHHHHhCcCCCCCccHHHHHHHHHHHhhccCCCcccCceEEEEEccCCCCCCcchhHHHHHHHHC
Confidence 1 112233222333333344568999999999999887654211123345688999999988877777777666678
Q ss_pred CeEEEEEecCC-CCchhhhhcccC
Q 007848 507 PLSILIIGVGG-ADFKEMEILDAD 529 (587)
Q Consensus 507 PlSiiiVGvG~-~~f~~m~~ld~d 529 (587)
++.|.+||||. .|...|+.|-+.
T Consensus 137 gv~v~~igiG~~~d~~~l~~ia~~ 160 (186)
T cd01471 137 GVIIAVLGVGQGVNHEENRSLVGC 160 (186)
T ss_pred CCEEEEEEeehhhCHHHHHHhcCC
Confidence 99999999997 488888888854
No 229
>cd01463 vWA_VGCC_like VWA Voltage gated Calcium channel like: Voltage-gated calcium channels are a complex of five proteins: alpha 1, beta 1, gamma, alpha 2 and delta. The alpha 2 and delta subunits result from proteolytic processing of a single gene product and carries at its N-terminus the VWA and cache domains, The alpha 2 delta gene family has orthologues in D. melanogaster and C. elegans but none have been detected in aither A. thaliana or yeast. The exact biochemical function of the VWA domain is not known but the alpha 2 delta complex has been shown to regulate various functional properties of the channel complex.
Probab=98.32 E-value=1.6e-05 Score=76.73 Aligned_cols=156 Identities=15% Similarity=0.205 Sum_probs=104.1
Q ss_pred ceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 348 ~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
...++++.||.|+| |. .+..+.|-.++..++..+..+..+-++.|+..+. -.+|+....
T Consensus 12 ~p~~vv~llD~SgS------------M~----~~~l~~ak~~~~~ll~~l~~~d~v~lv~F~~~~~-----~~~~~~~~~ 70 (190)
T cd01463 12 SPKDIVILLDVSGS------------MT----GQRLHLAKQTVSSILDTLSDNDFFNIITFSNEVN-----PVVPCFNDT 70 (190)
T ss_pred CCceEEEEEECCCC------------CC----cHHHHHHHHHHHHHHHhCCCCCEEEEEEeCCCee-----EEeeecccc
Confidence 35899999999996 32 1345666667777777777777899999998621 113322110
Q ss_pred -CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhc-----cCCCceEEEEEEeCCCcCCHHHHHHHHH
Q 007848 428 -SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLA-----NHGQKYFVLLIITDGVVTDLQETKDALV 501 (587)
Q Consensus 428 -~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~-----~~~~~y~vlliltdG~i~d~~~t~~~i~ 501 (587)
..+.... .+...+.+..++..|.|++...|+.|.+..+..+. .....-..+++||||..++..+...++.
T Consensus 71 ~~~~~~~~----~~~~~~~l~~l~~~G~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~~ 146 (190)
T cd01463 71 LVQATTSN----KKVLKEALDMLEAKGIANYTKALEFAFSLLLKNLQSNHSGSRSQCNQAIMLITDGVPENYKEIFDKYN 146 (190)
T ss_pred eEecCHHH----HHHHHHHHhhCCCCCcchHHHHHHHHHHHHHHhhhcccccccCCceeEEEEEeCCCCCcHhHHHHHhc
Confidence 0011112 23334456778889999999999999887664210 1122346899999999988777776665
Q ss_pred Hcc--CCCeEEEEEecCCC--Cchhhhhccc
Q 007848 502 KAS--DLPLSILIIGVGGA--DFKEMEILDA 528 (587)
Q Consensus 502 ~as--~lPlSiiiVGvG~~--~f~~m~~ld~ 528 (587)
... ..|+.|..||||.+ |...|+.|=.
T Consensus 147 ~~~~~~~~v~i~tigiG~~~~d~~~L~~lA~ 177 (190)
T cd01463 147 WDKNSEIPVRVFTYLIGREVTDRREIQWMAC 177 (190)
T ss_pred ccccCCCcEEEEEEecCCccccchHHHHHHh
Confidence 322 35899999999975 6888888863
No 230
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.32 E-value=3e-06 Score=93.76 Aligned_cols=87 Identities=13% Similarity=0.152 Sum_probs=71.0
Q ss_pred CCCCCcEEEEEEecC-CCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccccccccccccc
Q 007848 64 LSKSDPMLVVYMKAR-DGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFL 142 (587)
Q Consensus 64 ~gksDPyv~v~~~~~-~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~L 142 (587)
.+..||||+|.+-+- .+. ...||+++.++.||.|++.|.|.+..++.-.|+|.|||+|.. +.++|+
T Consensus 476 ~~~~dpyV~Vei~G~p~D~--~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V~d~D~~-----------~~ddfi 542 (581)
T PLN02222 476 YSPPDFYTRVGIAGVPGDT--VMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEVHEYDMS-----------EKDDFG 542 (581)
T ss_pred CCCCCeeEEEEEeccCCCc--ceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEEEECCCC-----------CCCcEE
Confidence 456799999998651 112 367999999999999999999998888888999999999865 679999
Q ss_pred cceeeecchhhccCCeeEEEEccc
Q 007848 143 GEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 143 G~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
|+..+++..|..+- ...+|.+
T Consensus 543 gq~~lPv~~Lr~Gy---R~V~L~~ 563 (581)
T PLN02222 543 GQTCLPVWELSQGI---RAFPLHS 563 (581)
T ss_pred EEEEcchhhhhCcc---ceEEccC
Confidence 99999999997643 3457755
No 231
>PLN02270 phospholipase D alpha
Probab=98.32 E-value=5.1e-06 Score=94.09 Aligned_cols=86 Identities=16% Similarity=0.249 Sum_probs=71.9
Q ss_pred CCCCcEEEEEEEcCCCceeeEEecceecCC-CCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 220 SRNDPFLVISKIVESGTHIPVCKTEVLKNE-TKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 220 g~sDPyv~v~~~~~~g~~~~~~kT~vik~t-lnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
+.||||+.|.+.. ..+-||+++.+. .||+|+| |.+++... -..+.|.|.|-+.+|. .+||.+.+++.+|
T Consensus 45 ~~~~~y~tv~~~~-----a~v~rtr~~~~~~~~p~w~e~f~i~~ah~---~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~ 115 (808)
T PLN02270 45 GESQLYATIDLEK-----ARVGRTRKIENEPKNPRWYESFHIYCAHM---ASNIIFTVKDDNPIGA-TLIGRAYIPVEEI 115 (808)
T ss_pred CCCCceEEEEeCC-----cEEEEEeecCCCCCCCccccceEEeeccC---cceEEEEEecCCccCc-eEEEEEEEEHHHh
Confidence 4689999999944 358899999985 6999999 88888633 5789999999998886 6999999999999
Q ss_pred hhccCCCceeEeecccc
Q 007848 298 EKLHSSGQGQNLFLSTA 314 (587)
Q Consensus 298 ~~~~~~~~~~~l~~~~k 314 (587)
........|+++++..+
T Consensus 116 ~~g~~i~~~~~~~~~~~ 132 (808)
T PLN02270 116 LDGEEVDRWVEILDNDK 132 (808)
T ss_pred cCCCccccEEeccCCCC
Confidence 76555667899988764
No 232
>PLN02228 Phosphoinositide phospholipase C
Probab=98.32 E-value=6e-06 Score=91.16 Aligned_cols=103 Identities=16% Similarity=0.297 Sum_probs=78.5
Q ss_pred EEEEE-EEEeCCC---CC---CCCCCCCcEEEEEEecC-CCceeeEeeeeeecCCCCCce-eeeEEEEeecCceeEEEEE
Q 007848 48 QIELS-FSAADLR---DR---DVLSKSDPMLVVYMKAR-DGALVEVGRTEVVLNSLNPTW-ITKHIITYQFEVVQTLVFR 118 (587)
Q Consensus 48 ~ieL~-v~arnL~---~~---D~~gksDPyv~v~~~~~-~~~~~~~~rTevi~~tlNP~w-~e~f~~~~~~e~~q~L~~~ 118 (587)
.+.+. +++.+|+ .. +.....||||+|.+-+- .+. ...||+++.++.||.| ++.|.|....++.-.|+|.
T Consensus 432 ~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~--~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~ 509 (567)
T PLN02228 432 TLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDT--VSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK 509 (567)
T ss_pred eEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCC--CcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence 45555 5777762 11 23455899999998751 121 3579999999999999 9999999888888899999
Q ss_pred EEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 119 IYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 119 V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
|+|.|.. +.++|+|++.+++..|..+- ...+|.+
T Consensus 510 V~D~d~~-----------~~d~figq~~lPv~~Lr~GY---R~VpL~~ 543 (567)
T PLN02228 510 VQDYDND-----------TQNDFAGQTCLPLPELKSGV---RAVRLHD 543 (567)
T ss_pred EEeCCCC-----------CCCCEEEEEEcchhHhhCCe---eEEEccC
Confidence 9999865 67899999999999996532 3457755
No 233
>PLN02222 phosphoinositide phospholipase C 2
Probab=98.30 E-value=3.3e-06 Score=93.39 Aligned_cols=106 Identities=17% Similarity=0.176 Sum_probs=76.5
Q ss_pred cccceeeeccccCC----c--CCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEE
Q 007848 201 KTTTELILRCSDLD----C--KDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLII 273 (587)
Q Consensus 201 ~~l~v~vi~a~~L~----~--~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i 273 (587)
..+.+.|+.|.+++ . .+.....||||+|.+.+-.+. ....||++++++.||+|++ |.|++.. ..-.-|.|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D-~~~~rTk~v~nn~nP~W~e~f~F~i~~--PeLAllRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGD-TVMKKTKTLEDNWIPAWDEVFEFPLTV--PELALLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCC-cceeeeEecCCCCCcccCCeeEEEEEc--CceeEEEE
Confidence 34667788887642 2 223446799999999642111 2356899999999999998 7666542 22468999
Q ss_pred EEEeccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 274 ECFNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 274 ~V~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
+|||+|..+.++|||+..+++..|+. + -+..+|.+.
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~--G-yR~V~L~~~ 564 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQ--G-IRAFPLHSR 564 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhC--c-cceEEccCC
Confidence 99999988889999999999999965 2 234556553
No 234
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.21 E-value=5.6e-06 Score=91.97 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=77.2
Q ss_pred ccceeeeccccCCcC-C---CCCCCCcEEEEEEEcCCCceeeEEecceec-CCCCCceee-ceEEeeecCCCCCcEEEEE
Q 007848 202 TTTELILRCSDLDCK-D---LFSRNDPFLVISKIVESGTHIPVCKTEVLK-NETKPTWKS-VFLNIQQVGSKDSPLIIEC 275 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~-d---~~g~sDPyv~v~~~~~~g~~~~~~kT~vik-~tlnP~Wne-f~~~~~~l~~~~~~L~i~V 275 (587)
.+.+.++.|.+++.. + ....+||||.|.+.+-.+. ....+|++++ |+-||.|++ |.|++.. +.-.-|.|+|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D-~~~~~Tk~v~~NgfnP~W~e~f~F~l~v--PELAliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPAD-CAEQKTKVVKNNGFNPIWDEEFEFQLSV--PELALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccc-hhhhhceeeccCCcCcccCCeEEEEEec--cceeEEEEEE
Confidence 477888999965432 2 2246799999987542111 2367999665 559999998 7776653 3356899999
Q ss_pred EeccCCCCCceeEEEEEechhhhhccCCCceeEeecc
Q 007848 276 FNFNSNGKHDLIGKVQKSLADLEKLHSSGQGQNLFLS 312 (587)
Q Consensus 276 ~D~d~~~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~ 312 (587)
+|+|..++|||+|++.+++.+|++ +-+..+|.+.
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~---GyRhVpL~~~ 727 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQ---GYRHVPLLSR 727 (746)
T ss_pred EecCCCCcccccceeeccHHHhhC---ceeeeeecCC
Confidence 999999999999999999999975 2345677664
No 235
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=98.21 E-value=7.8e-06 Score=90.84 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=77.7
Q ss_pred EEEE-EEEeCCC-CCCC---CCCCCcEEEEEEec-CCCceeeEeeee-eecCCCCCceeeeEEEEeecCceeEEEEEEEE
Q 007848 49 IELS-FSAADLR-DRDV---LSKSDPMLVVYMKA-RDGALVEVGRTE-VVLNSLNPTWITKHIITYQFEVVQTLVFRIYD 121 (587)
Q Consensus 49 ieL~-v~arnL~-~~D~---~gksDPyv~v~~~~-~~~~~~~~~rTe-vi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D 121 (587)
+.+. +++.+++ +.+. ...+||||.|.+-+ ..+. -..+|+ |..|+-||.|+|.|.|.+..++.-.|+|+|+|
T Consensus 618 L~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~--~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d 695 (746)
T KOG0169|consen 618 LKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADC--AEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHD 695 (746)
T ss_pred eEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccch--hhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEe
Confidence 4444 4667443 3332 25689999999865 1111 478999 56677999999999999999999999999999
Q ss_pred cCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+|.. +++||+|+..+++..|..+- ...+|.+
T Consensus 696 ~d~~-----------~~ddF~GQ~tlP~~~L~~Gy---RhVpL~~ 726 (746)
T KOG0169|consen 696 YDYI-----------GKDDFIGQTTLPVSELRQGY---RHVPLLS 726 (746)
T ss_pred cCCC-----------CcccccceeeccHHHhhCce---eeeeecC
Confidence 9976 78999999999999997543 3356755
No 236
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.21 E-value=5.9e-06 Score=70.75 Aligned_cols=83 Identities=22% Similarity=0.250 Sum_probs=64.8
Q ss_pred EEEE-EEeCCCCCC---CCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 50 ELSF-SAADLRDRD---VLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 50 eL~v-~arnL~~~D---~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
.++| +||||...+ ..+++||||.+.+.+ .++.||++ +.||.|+|.|.|++ +....+.+.|||....
T Consensus 2 ~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~---srnd~WnE~F~i~V--dk~nEiel~VyDk~~~ 71 (109)
T cd08689 2 TITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP---SRNDRWNEDFEIPV--EKNNEEEVIVYDKGGD 71 (109)
T ss_pred EEEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC---CCCCcccceEEEEe--cCCcEEEEEEEeCCCC
Confidence 3443 689999888 678899999999965 25888887 48999999999888 4566999999998753
Q ss_pred ccccccccccccccccccceeeecchhhc
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVT 154 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~~l~~ 154 (587)
..-.||..=+.|++|..
T Consensus 72 ------------~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 72 ------------QPVPVGLLWLRLSDIAE 88 (109)
T ss_pred ------------eecceeeehhhHHHHHH
Confidence 34567777777777754
No 237
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.19 E-value=5.9e-06 Score=70.78 Aligned_cols=84 Identities=13% Similarity=0.228 Sum_probs=67.9
Q ss_pred cceeeeccccCCcCC---CCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEec
Q 007848 203 TTELILRCSDLDCKD---LFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNF 278 (587)
Q Consensus 203 l~v~vi~a~~L~~~d---~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~ 278 (587)
|.+.+.+++|+...+ +.+++||||.+.+.. ..++||++ +.||.||| |.|+++. ...+.+.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved-----~~kaRTr~---srnd~WnE~F~i~Vdk----~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED-----VERARTKP---SRNDRWNEDFEIPVEK----NNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC-----EEEEeccC---CCCCcccceEEEEecC----CcEEEEEEEeC
Confidence 346788999999888 678899999999943 34788987 48999998 8888852 67899999997
Q ss_pred cCCCCCceeEEEEEechhhhh
Q 007848 279 NSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 279 d~~~~dd~IG~~~i~l~~l~~ 299 (587)
.. ...-.||-.=+.+++|..
T Consensus 69 ~~-~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 69 GG-DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred CC-CeecceeeehhhHHHHHH
Confidence 54 344689999999999964
No 238
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=98.12 E-value=1e-05 Score=89.41 Aligned_cols=99 Identities=23% Similarity=0.246 Sum_probs=75.5
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCcee-eeEEEEeecCceeEEEEEEEEcCCCcccccc
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWI-TKHIITYQFEVVQTLVFRIYDVDTQFHNVDV 131 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~-e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~ 131 (587)
+.||.|+.... |-.-|||+|.+-+..--.....+|.|+.|.|||+|+ ++|.|.+..++.-.|+|.|||.|-+
T Consensus 1072 igaRHL~k~gr-~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf------ 1144 (1267)
T KOG1264|consen 1072 LGARHLPKLGR-SIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF------ 1144 (1267)
T ss_pred eeccccccCCC-CccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc------
Confidence 56899995543 445699999987611111135556667888999999 9999999988889999999999976
Q ss_pred ccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 132 KTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 132 ~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
+...|||++.+++..|..+- ...||++
T Consensus 1145 -----s~~~FiaqA~yPv~~ik~Gf---RsVpLkN 1171 (1267)
T KOG1264|consen 1145 -----SDPNFLAQATYPVKAIKSGF---RSVPLKN 1171 (1267)
T ss_pred -----CCcceeeeeecchhhhhccc---eeeeccc
Confidence 67779999999999987543 2346654
No 239
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=98.11 E-value=3.6e-05 Score=71.21 Aligned_cols=147 Identities=19% Similarity=0.265 Sum_probs=97.6
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
.+++.+|.|+| |.. ..++.+...+..++..+. .+-.+.++.|+..+. .-+++....
T Consensus 2 di~~llD~S~S------------m~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~li~f~~~~~-----~~~~~~~~~ 60 (161)
T cd01450 2 DIVFLLDGSES------------VGP----ENFEKVKDFIEKLVEKLDIGPDKTRVGLVQYSDDVR-----VEFSLNDYK 60 (161)
T ss_pred cEEEEEeCCCC------------cCH----HHHHHHHHHHHHHHHheeeCCCceEEEEEEEcCCce-----EEEECCCCC
Confidence 57899999996 331 255666666666666554 366788999988521 123333211
Q ss_pred CCCcccCHHHHHHHHHhhhcceee-c-CCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNL-A-GPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~-~-gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 505 (587)
..+.+.+.... +.. . |-|++...++.+.+...+..........++++||||..++..+..+++.+..+
T Consensus 61 ------~~~~~~~~i~~----~~~~~~~~t~~~~al~~a~~~~~~~~~~~~~~~~~iiliTDG~~~~~~~~~~~~~~~~~ 130 (161)
T cd01450 61 ------SKDDLLKAVKN----LKYLGGGGTNTGKALQYALEQLFSESNARENVPKVIIVLTDGRSDDGGDPKEAAAKLKD 130 (161)
T ss_pred ------CHHHHHHHHHh----cccCCCCCccHHHHHHHHHHHhcccccccCCCCeEEEEECCCCCCCCcchHHHHHHHHH
Confidence 23444443332 222 2 37999999999988776542122466789999999998775455555555556
Q ss_pred CCeEEEEEecCCCCchhhhhccc
Q 007848 506 LPLSILIIGVGGADFKEMEILDA 528 (587)
Q Consensus 506 lPlSiiiVGvG~~~f~~m~~ld~ 528 (587)
.++-|++||+|..+.+.|+.|-+
T Consensus 131 ~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 131 EGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CCCEEEEEeccccCHHHHHHHhC
Confidence 69999999999988988888873
No 240
>cd01466 vWA_C3HC4_type VWA C3HC4-type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most,
Probab=98.07 E-value=5.5e-05 Score=70.52 Aligned_cols=145 Identities=13% Similarity=0.180 Sum_probs=93.8
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 429 (587)
+++++.||.|+| |.. +..++|-.++..+++.+.++.++-+++|+... .. .+|+.. ..
T Consensus 1 ~~v~~vlD~S~S------------M~~----~rl~~ak~a~~~l~~~l~~~~~~~li~F~~~~-~~----~~~~~~--~~ 57 (155)
T cd01466 1 VDLVAVLDVSGS------------MAG----DKLQLVKHALRFVISSLGDADRLSIVTFSTSA-KR----LSPLRR--MT 57 (155)
T ss_pred CcEEEEEECCCC------------CCc----HHHHHHHHHHHHHHHhCCCcceEEEEEecCCc-cc----cCCCcc--cC
Confidence 367899999997 432 23444545555555555444569999998761 11 123221 01
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 007848 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (587)
Q Consensus 430 p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlS 509 (587)
+ .-.+...+.+..+.+.|-|.+..-+..+.+..++.. ....-.++++||||..++. .++..+.+.++.
T Consensus 58 ~------~~~~~~~~~i~~~~~~g~T~~~~al~~a~~~~~~~~--~~~~~~~iillTDG~~~~~----~~~~~~~~~~v~ 125 (155)
T cd01466 58 A------KGKRSAKRVVDGLQAGGGTNVVGGLKKALKVLGDRR--QKNPVASIMLLSDGQDNHG----AVVLRADNAPIP 125 (155)
T ss_pred H------HHHHHHHHHHHhccCCCCccHHHHHHHHHHHHhhcc--cCCCceEEEEEcCCCCCcc----hhhhcccCCCce
Confidence 1 112334455556788899999999999998765431 2223468999999987654 334456677999
Q ss_pred EEEEecCC-CCchhhhhcccC
Q 007848 510 ILIIGVGG-ADFKEMEILDAD 529 (587)
Q Consensus 510 iiiVGvG~-~~f~~m~~ld~d 529 (587)
|..||+|. .+...|++|=..
T Consensus 126 v~~igig~~~~~~~l~~iA~~ 146 (155)
T cd01466 126 IHTFGLGASHDPALLAFIAEI 146 (155)
T ss_pred EEEEecCCCCCHHHHHHHHhc
Confidence 99999994 688888888743
No 241
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=98.07 E-value=9.1e-05 Score=67.59 Aligned_cols=146 Identities=17% Similarity=0.266 Sum_probs=99.8
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
+++++||.|+| +. ...+..+...+..++..+.. ...+-+++|+..+ ...++++.
T Consensus 2 ~v~~viD~S~S------------m~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~f~~~~-----~~~~~~~~-- 58 (161)
T cd00198 2 DIVFLLDVSGS------------MG----GEKLDKAKEALKALVSSLSASPPGDRVGLVTFGSNA-----RVVLPLTT-- 58 (161)
T ss_pred cEEEEEeCCCC------------cC----cchHHHHHHHHHHHHHhcccCCCCcEEEEEEecCcc-----ceeecccc--
Confidence 58899999996 21 34556666666667666665 6678899998741 11222221
Q ss_pred CCCcccCHHHHHHHHHhhhcce--eecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHH-HHHHHHHHcc
Q 007848 428 SYCEVEGIPGIMMAYTSALHNV--NLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-ETKDALVKAS 504 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v--~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~-~t~~~i~~as 504 (587)
....+.+.+ .+..+ ..+|.|.+...+..+.+...+.. ......+++++|||...+-. +..+.+..+.
T Consensus 59 ----~~~~~~~~~----~~~~~~~~~~~~t~~~~al~~~~~~~~~~~--~~~~~~~lvvitDg~~~~~~~~~~~~~~~~~ 128 (161)
T cd00198 59 ----DTDKADLLE----AIDALKKGLGGGTNIGAALRLALELLKSAK--RPNARRVIILLTDGEPNDGPELLAEAARELR 128 (161)
T ss_pred ----cCCHHHHHH----HHHhcccCCCCCccHHHHHHHHHHHhcccC--CCCCceEEEEEeCCCCCCCcchhHHHHHHHH
Confidence 012233332 23333 37789999999999998876432 34678999999999887654 5555666666
Q ss_pred CCCeEEEEEecCC-CCchhhhhcccC
Q 007848 505 DLPLSILIIGVGG-ADFKEMEILDAD 529 (587)
Q Consensus 505 ~lPlSiiiVGvG~-~~f~~m~~ld~d 529 (587)
...+.|.+||+|+ .+-..++.|++.
T Consensus 129 ~~~v~v~~v~~g~~~~~~~l~~l~~~ 154 (161)
T cd00198 129 KLGITVYTIGIGDDANEDELKEIADK 154 (161)
T ss_pred HcCCEEEEEEcCCCCCHHHHHHHhcc
Confidence 7799999999998 788888888854
No 242
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=98.06 E-value=8.4e-05 Score=69.80 Aligned_cols=145 Identities=16% Similarity=0.180 Sum_probs=97.3
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 429 (587)
+++++.+|.|+| |.. ..+++|..++..++..+..+..+-++.|+... . ..+++..
T Consensus 1 ~~~~~vlD~S~S------------M~~----~~~~~~k~a~~~~~~~l~~~~~v~li~f~~~~-~----~~~~~~~---- 55 (170)
T cd01465 1 LNLVFVIDRSGS------------MDG----PKLPLVKSALKLLVDQLRPDDRLAIVTYDGAA-E----TVLPATP---- 55 (170)
T ss_pred CcEEEEEECCCC------------CCC----hhHHHHHHHHHHHHHhCCCCCEEEEEEecCCc-c----EEecCcc----
Confidence 578999999996 431 13677888888888888777789999998861 1 1122211
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCC----HHHHHHHHHHccC
Q 007848 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD----LQETKDALVKASD 505 (587)
Q Consensus 430 p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d----~~~t~~~i~~as~ 505 (587)
. ... +.....+..++..|.|++...++.+.+..++.. ....--.++++|||.-++ .++..+++..+..
T Consensus 56 -~-~~~----~~l~~~l~~~~~~g~T~~~~al~~a~~~~~~~~--~~~~~~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~ 127 (170)
T cd01465 56 -V-RDK----AAILAAIDRLTAGGSTAGGAGIQLGYQEAQKHF--VPGGVNRILLATDGDFNVGETDPDELARLVAQKRE 127 (170)
T ss_pred -c-chH----HHHHHHHHcCCCCCCCCHHHHHHHHHHHHHhhc--CCCCeeEEEEEeCCCCCCCCCCHHHHHHHHHHhhc
Confidence 0 111 223344555667899999999999998876542 112225678999998642 4555566666556
Q ss_pred CCeEEEEEecCCC-Cchhhhhcc
Q 007848 506 LPLSILIIGVGGA-DFKEMEILD 527 (587)
Q Consensus 506 lPlSiiiVGvG~~-~f~~m~~ld 527 (587)
..+-|..||+|.. +...|+.+=
T Consensus 128 ~~v~i~~i~~g~~~~~~~l~~ia 150 (170)
T cd01465 128 SGITLSTLGFGDNYNEDLMEAIA 150 (170)
T ss_pred CCeEEEEEEeCCCcCHHHHHHHH
Confidence 7888999999954 666666665
No 243
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.05 E-value=6e-06 Score=88.03 Aligned_cols=90 Identities=21% Similarity=0.313 Sum_probs=74.7
Q ss_pred EEEEEE-EEeCCCCCCCC-CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceee-eEEEEeecCcee--EEEEEEEEc
Q 007848 48 QIELSF-SAADLRDRDVL-SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWIT-KHIITYQFEVVQ--TLVFRIYDV 122 (587)
Q Consensus 48 ~ieL~v-~arnL~~~D~~-gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e-~f~~~~~~e~~q--~L~~~V~D~ 122 (587)
++-+.| .||+||-||.. ...|.||++.+.+ ..+||.|..++|||.|+. -|.|++..+..| +|.+.+.|+
T Consensus 4 kl~vki~a~r~lpvmdkasd~tdafveik~~n------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~ 77 (1169)
T KOG1031|consen 4 KLGVKIKAARHLPVMDKASDLTDAFVEIKFAN------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDH 77 (1169)
T ss_pred cceeEEEeccCCcccccccccchheeEEEecc------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecc
Confidence 344553 57999999975 4679999999976 589999999999999994 578888776655 899999999
Q ss_pred CCCccccccccccccccccccceeeecchhhc
Q 007848 123 DTQFHNVDVKTLKLVEQQFLGEATCTLSQIVT 154 (587)
Q Consensus 123 D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~ 154 (587)
|+. +.+|-||.+.+++.-|.-
T Consensus 78 dty-----------sandaigkv~i~idpl~~ 98 (1169)
T KOG1031|consen 78 DTY-----------SANDAIGKVNIDIDPLCL 98 (1169)
T ss_pred ccc-----------ccccccceeeeccChHHH
Confidence 987 689999999999987653
No 244
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=98.03 E-value=2.5e-05 Score=74.42 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=95.6
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNG 425 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~ 425 (587)
++++++.||.|+| |... ....-.+|+..+...+...+ ....+-++.|+... .-.+|+..
T Consensus 3 ~~~v~~llD~SgS------------M~~~-~~~~~k~a~~~~~~~l~~~~~~~~~~~v~ii~F~~~a-----~~~~~l~~ 64 (176)
T cd01464 3 RLPIYLLLDTSGS------------MAGE-PIEALNQGLQMLQSELRQDPYALESVEISVITFDSAA-----RVIVPLTP 64 (176)
T ss_pred CCCEEEEEECCCC------------CCCh-HHHHHHHHHHHHHHHHhcChhhccccEEEEEEecCCc-----eEecCCcc
Confidence 3678999999997 4322 22334455666555554432 23468899998751 11234321
Q ss_pred CCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhcc----C-CCceEEEEEEeCCCcCCH-HHHHHH
Q 007848 426 SNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLAN----H-GQKYFVLLIITDGVVTDL-QETKDA 499 (587)
Q Consensus 426 ~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~----~-~~~y~vlliltdG~i~d~-~~t~~~ 499 (587)
. . ......++..|-|++...|+++.+........ . ...-.++++||||.-+|- ....++
T Consensus 65 ~---------~------~~~~~~l~~~GgT~l~~aL~~a~~~l~~~~~~~~~~~~~~~~~~iillTDG~~~~~~~~~~~~ 129 (176)
T cd01464 65 L---------E------SFQPPRLTASGGTSMGAALELALDCIDRRVQRYRADQKGDWRPWVFLLTDGEPTDDLTAAIER 129 (176)
T ss_pred H---------H------hcCCCcccCCCCCcHHHHHHHHHHHHHHHHHHhcccCcCCcCcEEEEEcCCCCCchHHHHHHH
Confidence 0 0 11234567789999999999999876543210 1 111247899999998664 444477
Q ss_pred HHHccCCCeEEEEEecCC-CCchhhhhcccC
Q 007848 500 LVKASDLPLSILIIGVGG-ADFKEMEILDAD 529 (587)
Q Consensus 500 i~~as~lPlSiiiVGvG~-~~f~~m~~ld~d 529 (587)
+.++-..++.|..||||. .|...|+.|-+.
T Consensus 130 ~~~~~~~~~~i~~igiG~~~~~~~L~~ia~~ 160 (176)
T cd01464 130 IKEARDSKGRIVACAVGPKADLDTLKQITEG 160 (176)
T ss_pred HHhhcccCCcEEEEEeccccCHHHHHHHHCC
Confidence 777766789999999995 688889888844
No 245
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=98.00 E-value=0.00012 Score=69.50 Aligned_cols=141 Identities=16% Similarity=0.171 Sum_probs=89.4
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC-CCCcceeeecccCCCCCceeEEeC-CCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS-DKRFPAWGFGARPIDGPVSHCFNL-NGSNS 428 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~-d~~~~~~gFG~~~~~~~~~~~f~l-~~~~~ 428 (587)
.+.+.||.|+| |.. .+..+.|-.++..+++.... +-.+-+|+|+...+.......++. .++
T Consensus 2 ~v~~llD~SgS------------M~~---~~kl~~ak~a~~~l~~~l~~~~d~~~l~~F~~~~~~~~~~~~~~~~~~~-- 64 (174)
T cd01454 2 AVTLLLDLSGS------------MRS---DRRIDVAKKAAVLLAEALEACGVPHAILGFTTDAGGRERVRWIKIKDFD-- 64 (174)
T ss_pred EEEEEEECCCC------------CCC---CcHHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCccceEEEEecCcc--
Confidence 57899999997 331 13444444444444444432 445999999876211111111221 111
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCC----------HHHHHH
Q 007848 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD----------LQETKD 498 (587)
Q Consensus 429 ~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d----------~~~t~~ 498 (587)
. .+....++.+..+...|.|.+.+.|..+.+...+. ...--++++||||.-++ +++.++
T Consensus 65 ~-------~~~~~~~~~l~~~~~~g~T~~~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~ 133 (174)
T cd01454 65 E-------SLHERARKRLAALSPGGNTRDGAAIRHAAERLLAR----PEKRKILLVISDGEPNDLDYYEGNVFATEDALR 133 (174)
T ss_pred c-------ccchhHHHHHHccCCCCCCcHHHHHHHHHHHHhcC----CCcCcEEEEEeCCCcCcccccCcchhHHHHHHH
Confidence 1 11123355566777788999999999998876642 23356899999998764 345555
Q ss_pred HHHHccCCCeEEEEEecCCCC
Q 007848 499 ALVKASDLPLSILIIGVGGAD 519 (587)
Q Consensus 499 ~i~~as~lPlSiiiVGvG~~~ 519 (587)
++.+|.+..+.+..||||++.
T Consensus 134 ~~~~~~~~gi~v~~igig~~~ 154 (174)
T cd01454 134 AVIEARKLGIEVFGITIDRDA 154 (174)
T ss_pred HHHHHHhCCcEEEEEEecCcc
Confidence 588888889999999999875
No 246
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.99 E-value=0.00018 Score=67.70 Aligned_cols=145 Identities=18% Similarity=0.271 Sum_probs=91.6
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
.+++.+|-|+| +.. ..++++...+-.++..++ ++-++-+..|+..+ .-.|+++.
T Consensus 2 Dv~~vlD~S~S------------m~~----~~~~~~k~~~~~l~~~~~~~~~~~rvgli~fs~~~-----~~~~~l~~-- 58 (164)
T cd01482 2 DIVFLVDGSWS------------IGR----SNFNLVRSFLSSVVEAFEIGPDGVQVGLVQYSDDP-----RTEFDLNA-- 58 (164)
T ss_pred CEEEEEeCCCC------------cCh----hhHHHHHHHHHHHHhheeeCCCceEEEEEEECCCe-----eEEEecCC--
Confidence 57899999886 331 234555555555555443 45678899998862 22466642
Q ss_pred CCCcccCHHHHHHHHHhhhccee-ecCCCChHHHHHHHHHHHHhh-hccCCCceEEEEEEeCCCcCC-HHHHHHHHHHcc
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTD-LQETKDALVKAS 504 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~-~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdG~i~d-~~~t~~~i~~as 504 (587)
....+.++++.. .+. .+|.|+....|+.+.+...+. ........-+++|||||.-+| ..+..+.+.
T Consensus 59 ----~~~~~~l~~~l~----~~~~~~g~T~~~~aL~~a~~~~~~~~~~~r~~~~k~iillTDG~~~~~~~~~a~~lk--- 127 (164)
T cd01482 59 ----YTSKEDVLAAIK----NLPYKGGNTRTGKALTHVREKNFTPDAGARPGVPKVVILITDGKSQDDVELPARVLR--- 127 (164)
T ss_pred ----CCCHHHHHHHHH----hCcCCCCCChHHHHHHHHHHHhcccccCCCCCCCEEEEEEcCCCCCchHHHHHHHHH---
Confidence 122345555444 333 478899999888887654321 111334567899999998754 344444443
Q ss_pred CCCeEEEEEecCCCCchhhhhcccC
Q 007848 505 DLPLSILIIGVGGADFKEMEILDAD 529 (587)
Q Consensus 505 ~lPlSiiiVGvG~~~f~~m~~ld~d 529 (587)
...+.|+.||+|+.+-..|++|-+.
T Consensus 128 ~~gi~i~~ig~g~~~~~~L~~ia~~ 152 (164)
T cd01482 128 NLGVNVFAVGVKDADESELKMIASK 152 (164)
T ss_pred HCCCEEEEEecCcCCHHHHHHHhCC
Confidence 4688999999999887777777744
No 247
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=97.88 E-value=0.00023 Score=68.39 Aligned_cols=150 Identities=16% Similarity=0.184 Sum_probs=96.6
Q ss_pred ceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---------CCCcceeeecccCCCCCce
Q 007848 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---------DKRFPAWGFGARPIDGPVS 418 (587)
Q Consensus 348 ~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---------d~~~~~~gFG~~~~~~~~~ 418 (587)
|.+.+++.+|-|+| |.. ..++.+...+-.++..+.. +-++-++-|+.. +.
T Consensus 1 c~~dvv~vlD~S~S------------m~~----~~~~~~k~~~~~~~~~l~~~~~~~i~~~~~rvglv~fs~~-----~~ 59 (186)
T cd01480 1 GPVDITFVLDSSES------------VGL----QNFDITKNFVKRVAERFLKDYYRKDPAGSWRVGVVQYSDQ-----QE 59 (186)
T ss_pred CCeeEEEEEeCCCc------------cch----hhHHHHHHHHHHHHHHHhhhhccCCCCCceEEEEEEecCC-----ce
Confidence 66899999999997 331 3345555545455555522 245777777754 33
Q ss_pred eEEeCCCCCCCCcccCHHHHHHHHHhhhccee-ecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCH--HH
Q 007848 419 HCFNLNGSNSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL--QE 495 (587)
Q Consensus 419 ~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~-~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~--~~ 495 (587)
..|+++... ...+ ...+.+..++ .+|.|+....|+.|.+..... .....--++++||||.-++. ..
T Consensus 60 ~~~~l~~~~-----~~~~----~l~~~i~~l~~~gg~T~~~~AL~~a~~~l~~~--~~~~~~~~iillTDG~~~~~~~~~ 128 (186)
T cd01480 60 VEAGFLRDI-----RNYT----SLKEAVDNLEYIGGGTFTDCALKYATEQLLEG--SHQKENKFLLVITDGHSDGSPDGG 128 (186)
T ss_pred eeEeccccc-----CCHH----HHHHHHHhCccCCCCccHHHHHHHHHHHHhcc--CCCCCceEEEEEeCCCcCCCcchh
Confidence 457765321 1223 3344555555 478999999999998876641 23345678999999976422 23
Q ss_pred HHHHHHHccCCCeEEEEEecCCCCchhhhhcccC
Q 007848 496 TKDALVKASDLPLSILIIGVGGADFKEMEILDAD 529 (587)
Q Consensus 496 t~~~i~~as~lPlSiiiVGvG~~~f~~m~~ld~d 529 (587)
..+++.++.+..+.|..||||..+-..|+++-++
T Consensus 129 ~~~~~~~~~~~gi~i~~vgig~~~~~~L~~IA~~ 162 (186)
T cd01480 129 IEKAVNEADHLGIKIFFVAVGSQNEEPLSRIACD 162 (186)
T ss_pred HHHHHHHHHHCCCEEEEEecCccchHHHHHHHcC
Confidence 3445555667899999999999777767666643
No 248
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=97.86 E-value=0.00045 Score=76.08 Aligned_cols=154 Identities=14% Similarity=0.169 Sum_probs=102.3
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCC-Ccce--eeecccCCCCCceeEEeCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDK-RFPA--WGFGARPIDGPVSHCFNLNG 425 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~-~~~~--~gFG~~~~~~~~~~~f~l~~ 425 (587)
++.++|.||-|+| |. ..|-.++|...+..++..++... .+-+ ..|+.. ....|++..
T Consensus 42 ~lDIvFLLD~SgS------------Mg---~~Nfle~AK~Fa~~LV~~l~Is~D~V~VgiV~FSd~-----~r~vfpL~s 101 (576)
T PTZ00441 42 EVDLYLLVDGSGS------------IG---YHNWITHVIPMLMGLIQQLNLSDDAINLYMSLFSNN-----TTELIRLGS 101 (576)
T ss_pred CceEEEEEeCCCc------------cC---CccHHHHHHHHHHHHHHHhccCCCceEEEEEEeCCC-----ceEEEecCC
Confidence 5899999999997 43 23445778888888888875432 2322 345443 334566643
Q ss_pred CCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 007848 426 SNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (587)
Q Consensus 426 ~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 505 (587)
.. -...+.++.+-.+....+..+|-|++...|..|.+...+.. .+...--++++||||.-++..++++++.....
T Consensus 102 ~~----s~Dk~~aL~~I~sL~~~~~pgGgTnig~AL~~Aae~L~sr~-~R~nvpKVVILLTDG~sns~~dvleaAq~LR~ 176 (576)
T PTZ00441 102 GA----SKDKEQALIIVKSLRKTYLPYGKTNMTDALLEVRKHLNDRV-NRENAIQLVILMTDGIPNSKYRALEESRKLKD 176 (576)
T ss_pred Cc----cccHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHhhcc-cccCCceEEEEEecCCCCCcccHHHHHHHHHH
Confidence 21 12335666666666667778899999999999887655321 12234579999999997666666666666666
Q ss_pred CCeEEEEEecCCC-Cchhhhhcc
Q 007848 506 LPLSILIIGVGGA-DFKEMEILD 527 (587)
Q Consensus 506 lPlSiiiVGvG~~-~f~~m~~ld 527 (587)
..+-|+.||||.+ +=..|+.|-
T Consensus 177 ~GVeI~vIGVG~g~n~e~LrlIA 199 (576)
T PTZ00441 177 RNVKLAVIGIGQGINHQFNRLLA 199 (576)
T ss_pred CCCEEEEEEeCCCcCHHHHHHHh
Confidence 7999999999985 434444443
No 249
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.80 E-value=2e-05 Score=90.33 Aligned_cols=101 Identities=20% Similarity=0.212 Sum_probs=80.4
Q ss_pred EEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEE-eecCce--eEEEEEEEEcCCCccccc
Q 007848 54 SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIIT-YQFEVV--QTLVFRIYDVDTQFHNVD 130 (587)
Q Consensus 54 ~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~-~~~e~~--q~L~~~V~D~D~~~~~~~ 130 (587)
.+++|+-..-...+||||+.|+.++ -+.+.+.||+|+++|.||+|+|.++.+ +..+.. ..|.+.||..++.
T Consensus 1532 H~K~L~~Lqdg~~P~pyVK~YLlPd-p~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls~~~~----- 1605 (1639)
T KOG0905|consen 1532 HAKGLALLQDGQDPDPYVKTYLLPD-PRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLSNGGL----- 1605 (1639)
T ss_pred hhcccccccCCCCCCcceeEEecCC-chHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeecccce-----
Confidence 3677755444667899999999983 344578999999999999999998765 443333 4899999998875
Q ss_pred cccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 131 VKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 131 ~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
....|+|.+.++|.++.-.....-|++|..
T Consensus 1606 ------~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1606 ------LENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ------eeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 678899999999999877666678999854
No 250
>TIGR03788 marine_srt_targ marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).
Probab=97.77 E-value=0.00025 Score=80.67 Aligned_cols=148 Identities=14% Similarity=0.143 Sum_probs=101.1
Q ss_pred ceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 348 ~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
...++++.||.|+| |.. +..++|-.++..++....++-.|-++.|+... ...|+..
T Consensus 270 ~p~~vvfvlD~SgS------------M~g----~~i~~ak~al~~~l~~L~~~d~~~ii~F~~~~-----~~~~~~~--- 325 (596)
T TIGR03788 270 LPRELVFVIDTSGS------------MAG----ESIEQAKSALLLALDQLRPGDRFNIIQFDSDV-----TLLFPVP--- 325 (596)
T ss_pred CCceEEEEEECCCC------------CCC----ccHHHHHHHHHHHHHhCCCCCEEEEEEECCcc-----eEecccc---
Confidence 34789999999996 431 34667777777788888777789999998761 1122211
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCC
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLP 507 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lP 507 (587)
...+ ++=++...+.+..++..|-|++.+.|+.|.+.... .....--.+++||||.+.|.++.++++..+. -.
T Consensus 326 ---~~~~-~~~~~~a~~~i~~l~a~GgT~l~~aL~~a~~~~~~---~~~~~~~~iillTDG~~~~~~~~~~~~~~~~-~~ 397 (596)
T TIGR03788 326 ---VPAT-AHNLARARQFVAGLQADGGTEMAGALSAALRDDGP---ESSGALRQVVFLTDGAVGNEDALFQLIRTKL-GD 397 (596)
T ss_pred ---ccCC-HHHHHHHHHHHhhCCCCCCccHHHHHHHHHHhhcc---cCCCceeEEEEEeCCCCCCHHHHHHHHHHhc-CC
Confidence 0111 22234445556677788999999999998876321 1223345678899999999888888876553 24
Q ss_pred eEEEEEecCCC-Cchhhhhcc
Q 007848 508 LSILIIGVGGA-DFKEMEILD 527 (587)
Q Consensus 508 lSiiiVGvG~~-~f~~m~~ld 527 (587)
.-|..||||++ +...|+.|-
T Consensus 398 ~ri~tvGiG~~~n~~lL~~lA 418 (596)
T TIGR03788 398 SRLFTVGIGSAPNSYFMRKAA 418 (596)
T ss_pred ceEEEEEeCCCcCHHHHHHHH
Confidence 56778999986 777777776
No 251
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.76 E-value=0.00031 Score=68.61 Aligned_cols=165 Identities=22% Similarity=0.272 Sum_probs=98.9
Q ss_pred cceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCC-CceeEEeCCC
Q 007848 347 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDG-PVSHCFNLNG 425 (587)
Q Consensus 347 g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~-~~~~~f~l~~ 425 (587)
....++++.||.|+| +.+.+.. ..+..+.|..++..++..+.++..+-++.|+...... .....+|...
T Consensus 18 ~~~~~vv~vlD~SgS---------M~~~~~~-~~~rl~~ak~a~~~~l~~l~~~~~v~lv~F~~~~~~~~~~~~~~p~~~ 87 (206)
T cd01456 18 QLPPNVAIVLDNSGS---------MREVDGG-GETRLDNAKAALDETANALPDGTRLGLWTFSGDGDNPLDVRVLVPKGC 87 (206)
T ss_pred CCCCcEEEEEeCCCC---------CcCCCCC-cchHHHHHHHHHHHHHHhCCCCceEEEEEecCCCCCCccccccccccc
Confidence 345789999999995 3321111 2456677777777777777667789999999852111 1000111000
Q ss_pred CCCCCcccCHH-HHHHHHHhhhccee-ecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCH---HHHHHHH
Q 007848 426 SNSYCEVEGIP-GIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL---QETKDAL 500 (587)
Q Consensus 426 ~~~~p~~~g~~-~i~~~Y~~~~~~v~-~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~---~~t~~~i 500 (587)
.-..+.+.. .-.+...+.+..+. ..|-|++...|+.+.+... ...-..+++||||.-++- .+..+.+
T Consensus 88 --~~~~~~~~~~~~~~~l~~~i~~i~~~~G~T~l~~aL~~a~~~l~------~~~~~~iillTDG~~~~~~~~~~~~~~~ 159 (206)
T cd01456 88 --LTAPVNGFPSAQRSALDAALNSLQTPTGWTPLAAALAEAAAYVD------PGRVNVVVLITDGEDTCGPDPCEVAREL 159 (206)
T ss_pred --cccccCCCCcccHHHHHHHHHhhcCCCCcChHHHHHHHHHHHhC------CCCcceEEEEcCCCccCCCCHHHHHHHH
Confidence 000111110 12344455667777 7899999999998877653 122268999999987553 3344444
Q ss_pred HHcc--CCCeEEEEEecCCC-CchhhhhcccC
Q 007848 501 VKAS--DLPLSILIIGVGGA-DFKEMEILDAD 529 (587)
Q Consensus 501 ~~as--~lPlSiiiVGvG~~-~f~~m~~ld~d 529 (587)
.... .-++.|.+||+|.+ +...|+.+=..
T Consensus 160 ~~~~~~~~~i~i~~igiG~~~~~~~l~~iA~~ 191 (206)
T cd01456 160 AKRRTPAPPIKVNVIDFGGDADRAELEAIAEA 191 (206)
T ss_pred HHhcCCCCCceEEEEEecCcccHHHHHHHHHh
Confidence 4331 14888999999976 56777777633
No 252
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=97.75 E-value=0.00029 Score=68.33 Aligned_cols=155 Identities=13% Similarity=0.183 Sum_probs=91.2
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc---CCCCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD---SDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd---~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
+++++.||.|.| |.+ ..++++..++..++...+ ..-++-++.|+.. ....||++-
T Consensus 1 ~di~~vlD~SgS------------M~~----~~~~~~k~~~~~l~~~l~~~~~~~~v~li~Fs~~-----~~~~~~~~~- 58 (198)
T cd01470 1 LNIYIALDASDS------------IGE----EDFDEAKNAIKTLIEKISSYEVSPRYEIISYASD-----PKEIVSIRD- 58 (198)
T ss_pred CcEEEEEECCCC------------ccH----HHHHHHHHHHHHHHHHccccCCCceEEEEEecCC-----ceEEEeccc-
Confidence 478999999996 432 345666666666665543 3456889999875 122356532
Q ss_pred CCCCcccCHHHHHHHHHhhhccee-ecCCCChHHHHHHHHHHHHhhhcc----CCCceEEEEEEeCCCcCC---HHHHHH
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLAN----HGQKYFVLLIITDGVVTD---LQETKD 498 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~-~~gpt~f~~ii~~~~~~a~~~~~~----~~~~y~vlliltdG~i~d---~~~t~~ 498 (587)
+.-...+.++++-...-.... ..|-|++...|+++.+........ ....-.++++||||.-++ ..+..+
T Consensus 59 ---~~~~~~~~~~~~l~~~~~~~~~~~ggT~~~~Al~~~~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~~~~~~~~ 135 (198)
T cd01470 59 ---FNSNDADDVIKRLEDFNYDDHGDKTGTNTAAALKKVYERMALEKVRNKEAFNETRHVIILFTDGKSNMGGSPLPTVD 135 (198)
T ss_pred ---CCCCCHHHHHHHHHhCCcccccCccchhHHHHHHHHHHHHHHHHhcCccchhhcceEEEEEcCCCcCCCCChhHHHH
Confidence 111223344333222111111 246689999998887654221110 112347899999998753 334445
Q ss_pred HHHHc----------cCCCeEEEEEecCCC-CchhhhhcccC
Q 007848 499 ALVKA----------SDLPLSILIIGVGGA-DFKEMEILDAD 529 (587)
Q Consensus 499 ~i~~a----------s~lPlSiiiVGvG~~-~f~~m~~ld~d 529 (587)
.+.++ ...++.|..||||+. +.+.|+.|-..
T Consensus 136 ~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~~~~~~L~~iA~~ 177 (198)
T cd01470 136 KIKNLVYKNNKSDNPREDYLDVYVFGVGDDVNKEELNDLASK 177 (198)
T ss_pred HHHHHHhcccccccchhcceeEEEEecCcccCHHHHHHHhcC
Confidence 55443 234689999999975 88888888744
No 253
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=97.74 E-value=0.00044 Score=64.65 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=91.8
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
+++++.+|-|.| +. ..|+++...+..++..+.. .-.+-++.|+..+ ... -.|+++..
T Consensus 1 ldv~~llD~S~S------------m~-----~~~~~~~~~~~~~~~~l~~~~~~~~v~lv~f~~~~-~~~--~~~~l~~~ 60 (163)
T cd01476 1 LDLLFVLDSSGS------------VR-----GKFEKYKKYIERIVEGLEIGPTATRVALITYSGRG-RQR--VRFNLPKH 60 (163)
T ss_pred CCEEEEEeCCcc------------hh-----hhHHHHHHHHHHHHHhcCCCCCCcEEEEEEEcCCC-ceE--EEecCCCC
Confidence 468899999996 32 1356666666677777654 4568899998851 111 13555421
Q ss_pred CCCCcccCHHHHHHHHHhhhccee-ecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcC-CHHHHHHHHHHcc
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT-DLQETKDALVKAS 504 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~-~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~-d~~~t~~~i~~as 504 (587)
...+.++++ +..++ .+|.|+....|+.+.+...+....+.....++++||||.-+ +..+..+.+.+
T Consensus 61 ------~~~~~l~~~----i~~l~~~gg~T~l~~aL~~a~~~l~~~~~~r~~~~~~villTDG~~~~~~~~~~~~l~~-- 128 (163)
T cd01476 61 ------NDGEELLEK----VDNLRFIGGTTATGAAIEVALQQLDPSEGRREGIPKVVVVLTDGRSHDDPEKQARILRA-- 128 (163)
T ss_pred ------CCHHHHHHH----HHhCccCCCCccHHHHHHHHHHHhccccCCCCCCCeEEEEECCCCCCCchHHHHHHHhh--
Confidence 122334333 33344 36789999999999887652211122334899999999875 34455555554
Q ss_pred CCCeEEEEEecCCC---Cchhhhhcc
Q 007848 505 DLPLSILIIGVGGA---DFKEMEILD 527 (587)
Q Consensus 505 ~lPlSiiiVGvG~~---~f~~m~~ld 527 (587)
..-+.|+.||+|+. +...|+.+-
T Consensus 129 ~~~v~v~~vg~g~~~~~~~~~L~~ia 154 (163)
T cd01476 129 VPNIETFAVGTGDPGTVDTEELHSIT 154 (163)
T ss_pred cCCCEEEEEECCCccccCHHHHHHHh
Confidence 46788999999986 555555554
No 254
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.71 E-value=0.00013 Score=81.10 Aligned_cols=94 Identities=14% Similarity=0.137 Sum_probs=69.5
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee--ceEEeeecCCCCCcEEEEEEeccC
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS--VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne--f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
+.+-++.||.|+... -|-.-|||+|.+.+..-.....++|.|+.|.+||+||+ |.|.+. .+.-.-|.|.|+|.|-
T Consensus 1067 lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~--nPe~A~lRF~V~eeDm 1143 (1267)
T KOG1264|consen 1067 LSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIY--NPEFAFLRFVVYEEDM 1143 (1267)
T ss_pred EEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEee--CCceEEEEEEEecccc
Confidence 557799999999543 23456999999866211112234455666779999994 666665 3335689999999999
Q ss_pred CCCCceeEEEEEechhhhh
Q 007848 281 NGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~~ 299 (587)
++...|||++..++..++.
T Consensus 1144 fs~~~FiaqA~yPv~~ik~ 1162 (1267)
T KOG1264|consen 1144 FSDPNFLAQATYPVKAIKS 1162 (1267)
T ss_pred cCCcceeeeeecchhhhhc
Confidence 9988899999999999964
No 255
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=6.6e-05 Score=75.99 Aligned_cols=86 Identities=14% Similarity=0.103 Sum_probs=71.0
Q ss_pred EEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCCCcccc
Q 007848 52 SFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNV 129 (587)
Q Consensus 52 ~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~~~~~~ 129 (587)
.++|+.|..+|..|-|||||.+++.++. ..+.+.||.+.++++||.|++.|.++..... .-.+.+.|||.+..
T Consensus 239 ~iRc~~l~ssDsng~sDpyvS~~l~pdv-~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~~~G---- 313 (362)
T KOG1013|consen 239 IIRCSHLASSDSNGYSDPYVSQRLSPDV-GKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDYDIG---- 313 (362)
T ss_pred EEEeeeeeccccCCCCCccceeecCCCc-chhhcccCcchhccCCccccccccccCCccchhcceEEEeecccCCC----
Confidence 4899999999999999999999998733 3457899999999999999999987755433 24788999999975
Q ss_pred ccccccccccccccceeeec
Q 007848 130 DVKTLKLVEQQFLGEATCTL 149 (587)
Q Consensus 130 ~~~~~~l~~~d~LG~~~i~L 149 (587)
+..|++|-+.+-+
T Consensus 314 -------~s~d~~GG~~~g~ 326 (362)
T KOG1013|consen 314 -------KSNDSIGGSMLGG 326 (362)
T ss_pred -------cCccCCCcccccc
Confidence 5788998776554
No 256
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=97.64 E-value=0.00056 Score=64.13 Aligned_cols=148 Identities=20% Similarity=0.237 Sum_probs=92.3
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
+++++.||-|+| +.. ..++.+..++..++..++. +-.+-++-|+.. +.--++++.
T Consensus 1 ~Dvv~vlD~SgS------------m~~----~~~~~~k~~~~~~~~~l~~~~~~~~~giv~Fs~~-----~~~~~~~~~- 58 (164)
T cd01472 1 ADIVFLVDGSES------------IGL----SNFNLVKDFVKRVVERLDIGPDGVRVGVVQYSDD-----PRTEFYLNT- 58 (164)
T ss_pred CCEEEEEeCCCC------------CCH----HHHHHHHHHHHHHHhhcccCCCCeEEEEEEEcCc-----eeEEEecCC-
Confidence 368899999997 332 3455555566666666652 336778888765 112345431
Q ss_pred CCCCcccCHHHHHHHHHhhhcceee-cCCCChHHHHHHHHHHHHhhhc-cCCCceEEEEEEeCCCcCCHHHHHHHHHHcc
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQSLA-NHGQKYFVLLIITDGVVTDLQETKDALVKAS 504 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~-~gpt~f~~ii~~~~~~a~~~~~-~~~~~y~vlliltdG~i~d~~~t~~~i~~as 504 (587)
. ...+.+. +.+..+.. +|.|++.+.+..|.+.-..... .....-.++++||||.-.+ +...+..+..
T Consensus 59 ~-----~~~~~~~----~~l~~l~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~iiliTDG~~~~--~~~~~~~~l~ 127 (164)
T cd01472 59 Y-----RSKDDVL----EAVKNLRYIGGGTNTGKALKYVRENLFTEASGSREGVPKVLVVITDGKSQD--DVEEPAVELK 127 (164)
T ss_pred C-----CCHHHHH----HHHHhCcCCCCCchHHHHHHHHHHHhCCcccCCCCCCCEEEEEEcCCCCCc--hHHHHHHHHH
Confidence 1 1223333 33445554 7889999999999886543210 1234457788999997653 2233333444
Q ss_pred CCCeEEEEEecCCCCchhhhhcccCC
Q 007848 505 DLPLSILIIGVGGADFKEMEILDADK 530 (587)
Q Consensus 505 ~lPlSiiiVGvG~~~f~~m~~ld~d~ 530 (587)
...+.|..||+|+.+...|+.+-++.
T Consensus 128 ~~gv~i~~ig~g~~~~~~L~~ia~~~ 153 (164)
T cd01472 128 QAGIEVFAVGVKNADEEELKQIASDP 153 (164)
T ss_pred HCCCEEEEEECCcCCHHHHHHHHCCC
Confidence 57889999999999888888887543
No 257
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=97.62 E-value=0.0017 Score=62.85 Aligned_cols=154 Identities=14% Similarity=0.163 Sum_probs=98.6
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHH-HHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEeCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQ-RAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~-~ai~~i~~~~~~yd~d---~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
.+++.+|=|.| +. ...++ +++..+-.++..++-. -++-+.=|+..+ ...||++.+
T Consensus 2 Di~fllD~S~S------------i~----~~~f~~~~~~f~~~lv~~l~i~~~~~rvgvv~fs~~~-----~~~~~~~~~ 60 (192)
T cd01473 2 DLTLILDESAS------------IG----YSNWRKDVIPFTEKIINNLNISKDKVHVGILLFAEKN-----RDVVPFSDE 60 (192)
T ss_pred cEEEEEeCCCc------------cc----HHHHHHHHHHHHHHHHHhCccCCCccEEEEEEecCCc-----eeEEecCcc
Confidence 47889998886 33 23344 3556666677777654 356677776652 224666532
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCH--HHHHHHHHHcc
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDL--QETKDALVKAS 504 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~--~~t~~~i~~as 504 (587)
.-..-+.++++-++.-+....+|-|+....|++|.+.............-|+++||||.-+|. ....++...+-
T Consensus 61 ----~~~~~~~l~~~i~~l~~~~~~~g~T~~~~AL~~a~~~~~~~~~~r~~~~kv~IllTDG~s~~~~~~~~~~~a~~lk 136 (192)
T cd01473 61 ----ERYDKNELLKKINDLKNSYRSGGETYIVEALKYGLKNYTKHGNRRKDAPKVTMLFTDGNDTSASKKELQDISLLYK 136 (192)
T ss_pred ----cccCHHHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccCCCCcccCCeEEEEEecCCCCCcchhhHHHHHHHHH
Confidence 122244555555444333445788999999988877644321112234789999999998764 34556666677
Q ss_pred CCCeEEEEEecCCCCchhhhhcccC
Q 007848 505 DLPLSILIIGVGGADFKEMEILDAD 529 (587)
Q Consensus 505 ~lPlSiiiVGvG~~~f~~m~~ld~d 529 (587)
+..+.|..||||..+-..++.+-+.
T Consensus 137 ~~gV~i~~vGiG~~~~~el~~ia~~ 161 (192)
T cd01473 137 EENVKLLVVGVGAASENKLKLLAGC 161 (192)
T ss_pred HCCCEEEEEEeccccHHHHHHhcCC
Confidence 8899999999999876666666543
No 258
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=97.62 E-value=0.0011 Score=61.68 Aligned_cols=146 Identities=18% Similarity=0.191 Sum_probs=97.1
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p 430 (587)
+++|.+|-|+| +...+ ...+...++..++..++..+..+ ++-++.|+... .-.++++
T Consensus 1 dvv~v~D~SgS---------M~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~v~l~~f~~~~-----~~~~~~t------ 57 (172)
T PF13519_consen 1 DVVFVLDNSGS---------MNGYD--GNRTRIDQAKDALNELLANLPGD-RVGLVSFSDSS-----RTLSPLT------ 57 (172)
T ss_dssp EEEEEEE-SGG---------GGTTT--SSS-HHHHHHHHHHHHHHHHTTS-EEEEEEESTSC-----EEEEEEE------
T ss_pred CEEEEEECCcc---------cCCCC--CCCcHHHHHHHHHHHHHHHCCCC-EEEEEEecccc-----ccccccc------
Confidence 57899999996 33221 12578899999999999988644 89999999851 1133332
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEE
Q 007848 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSI 510 (587)
Q Consensus 431 ~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlSi 510 (587)
...+.+.++..+........|.|++...|..|.+..... ...--.+++||||.-+ ....+++..+....+.|
T Consensus 58 --~~~~~~~~~l~~~~~~~~~~~~t~~~~al~~a~~~~~~~----~~~~~~iv~iTDG~~~--~~~~~~~~~~~~~~i~i 129 (172)
T PF13519_consen 58 --SDKDELKNALNKLSPQGMPGGGTNLYDALQEAAKMLASS----DNRRRAIVLITDGEDN--SSDIEAAKALKQQGITI 129 (172)
T ss_dssp --SSHHHHHHHHHTHHHHG--SSS--HHHHHHHHHHHHHC-----SSEEEEEEEEES-TTH--CHHHHHHHHHHCTTEEE
T ss_pred --ccHHHHHHHhhcccccccCccCCcHHHHHHHHHHHHHhC----CCCceEEEEecCCCCC--cchhHHHHHHHHcCCeE
Confidence 456677777666666666789999999999998877643 2345677888999654 43445666777889999
Q ss_pred EEEecCCCCc--hhhhhcc
Q 007848 511 LIIGVGGADF--KEMEILD 527 (587)
Q Consensus 511 iiVGvG~~~f--~~m~~ld 527 (587)
.+||+|...- ..|+.|-
T Consensus 130 ~~v~~~~~~~~~~~l~~la 148 (172)
T PF13519_consen 130 YTVGIGSDSDANEFLQRLA 148 (172)
T ss_dssp EEEEES-TT-EHHHHHHHH
T ss_pred EEEEECCCccHHHHHHHHH
Confidence 9999998764 3555554
No 259
>cd01474 vWA_ATR ATR (Anthrax Toxin Receptor): Anthrax toxin is a key virulence factor for Bacillus anthracis, the causative agent of anthrax. ATR is the cellular receptor for the anthrax protective antigen and facilitates entry of the toxin into cells. The VWA domain in ATR contains the toxin binding site and mediates interaction with protective antigen. The binding is mediated by divalent cations that binds to the MIDAS motif. These proteins are a family of vertebrate ECM receptors expressed by endothelial cells.
Probab=97.61 E-value=0.00088 Score=64.26 Aligned_cols=148 Identities=15% Similarity=0.183 Sum_probs=91.3
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccccc-CCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYD-SDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd-~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
.+++++.||-|+| |.. .+.+++..+-.++..|+ ++-++-++-|+.. ..-.|+|+-..
T Consensus 4 ~~Dvv~llD~SgS------------m~~-----~~~~~~~~~~~l~~~~~~~~~rvglv~Fs~~-----~~~~~~l~~~~ 61 (185)
T cd01474 4 HFDLYFVLDKSGS------------VAA-----NWIEIYDFVEQLVDRFNSPGLRFSFITFSTR-----ATKILPLTDDS 61 (185)
T ss_pred ceeEEEEEeCcCc------------hhh-----hHHHHHHHHHHHHHHcCCCCcEEEEEEecCC-----ceEEEeccccH
Confidence 3789999999997 431 12233344444444443 3456888888765 22357765321
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhh-ccCCCceEEEEEEeCCCcCC--HHHHHHHHHHcc
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSL-ANHGQKYFVLLIITDGVVTD--LQETKDALVKAS 504 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~-~~~~~~y~vlliltdG~i~d--~~~t~~~i~~as 504 (587)
+.+.++.. .+..+...|.|++..-|+.|.+...... ...... .++++||||.-+| ...+.++...+-
T Consensus 62 --------~~~~~~l~-~l~~~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~-~~villTDG~~~~~~~~~~~~~a~~l~ 131 (185)
T cd01474 62 --------SAIIKGLE-VLKKVTPSGQTYIHEGLENANEQIFNRNGGGRETV-SVIIALTDGQLLLNGHKYPEHEAKLSR 131 (185)
T ss_pred --------HHHHHHHH-HHhccCCCCCCcHHHHHHHHHHHHHhhccCCCCCC-eEEEEEcCCCcCCCCCcchHHHHHHHH
Confidence 12222221 2455666799999999999887653211 111122 7899999999843 334555555555
Q ss_pred CCCeEEEEEecCCCCchhhhhccc
Q 007848 505 DLPLSILIIGVGGADFKEMEILDA 528 (587)
Q Consensus 505 ~lPlSiiiVGvG~~~f~~m~~ld~ 528 (587)
+..+-|..||||+.+...|+.+-+
T Consensus 132 ~~gv~i~~vgv~~~~~~~L~~iA~ 155 (185)
T cd01474 132 KLGAIVYCVGVTDFLKSQLINIAD 155 (185)
T ss_pred HcCCEEEEEeechhhHHHHHHHhC
Confidence 678899999998888777777764
No 260
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=97.58 E-value=0.0017 Score=62.84 Aligned_cols=154 Identities=8% Similarity=0.153 Sum_probs=101.9
Q ss_pred cceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---------CCCcceeeecccCCCCCc
Q 007848 347 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---------DKRFPAWGFGARPIDGPV 417 (587)
Q Consensus 347 g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---------d~~~~~~gFG~~~~~~~~ 417 (587)
...+.++++||-|.| +. .+.|+++...+..++..++- .-++-+.-|+.. .
T Consensus 17 ~~~~DivfvlD~S~S------------m~----~~~f~~~k~fi~~~~~~~~~~~~~~~~~~~~rVGlV~fs~~-----a 75 (193)
T cd01477 17 NLWLDIVFVVDNSKG------------MT----QGGLWQVRATISSLFGSSSQIGTDYDDPRSTRVGLVTYNSN-----A 75 (193)
T ss_pred cceeeEEEEEeCCCC------------cc----hhhHHHHHHHHHHHHhhccccccccCCCCCcEEEEEEccCc-----e
Confidence 456899999999997 44 24588888887777776664 134655556553 3
Q ss_pred eeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhh-hccCCCceEEEEEEeCCCcCCH-HH
Q 007848 418 SHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTDL-QE 495 (587)
Q Consensus 418 ~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdG~i~d~-~~ 495 (587)
.-.|+|+ + ....++++++....+..+..+|-|++..-|..|.+.-... ...++..--|+++||||.-++. ..
T Consensus 76 ~~~~~L~-d-----~~~~~~~~~ai~~~~~~~~~~ggT~ig~aL~~A~~~l~~~~~~~R~~v~kvvIllTDg~~~~~~~~ 149 (193)
T cd01477 76 TVVADLN-D-----LQSFDDLYSQIQGSLTDVSSTNASYLDTGLQAAEQMLAAGKRTSRENYKKVVIVFASDYNDEGSND 149 (193)
T ss_pred EEEEecc-c-----ccCHHHHHHHHHHHhhccccCCcchHHHHHHHHHHHHHhhhccccCCCCeEEEEEecCccCCCCCC
Confidence 3468875 2 2346788888887677776677899999999887765532 1123446789999999744322 22
Q ss_pred HHHHHHHccCCCeEEEEEecCCC-Cchhhhhcc
Q 007848 496 TKDALVKASDLPLSILIIGVGGA-DFKEMEILD 527 (587)
Q Consensus 496 t~~~i~~as~lPlSiiiVGvG~~-~f~~m~~ld 527 (587)
..++..++.+..+.|..||||+. |=..|++|.
T Consensus 150 ~~~~a~~l~~~GI~i~tVGiG~~~d~~~~~~L~ 182 (193)
T cd01477 150 PRPIAARLKSTGIAIITVAFTQDESSNLLDKLG 182 (193)
T ss_pred HHHHHHHHHHCCCEEEEEEeCCCCCHHHHHHHH
Confidence 33334444567999999999985 323355544
No 261
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=97.52 E-value=0.0019 Score=62.09 Aligned_cols=151 Identities=12% Similarity=0.135 Sum_probs=96.0
Q ss_pred cceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc---cCCCCcceeeecccCCCCCceeEEeC
Q 007848 347 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY---DSDKRFPAWGFGARPIDGPVSHCFNL 423 (587)
Q Consensus 347 g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~y---d~d~~~~~~gFG~~~~~~~~~~~f~l 423 (587)
|.=.+++++||-|.| +.-.+ ..++..++|-.++...+..+ .+..++-++.|++. ...-..||
T Consensus 1 ~~~r~ivi~lD~S~S---------M~a~D--~~ptRl~~ak~~~~~fi~~~~~~~~~~~vglv~f~~~----~a~~~~Pl 65 (183)
T cd01453 1 GIMRHLIIVIDCSRS---------MEEQD--LKPSRLAVVLKLLELFIEEFFDQNPISQLGIISIKNG----RAEKLTDL 65 (183)
T ss_pred CceeEEEEEEECcHH---------HhcCC--CCchHHHHHHHHHHHHHHHHhhcCccccEEEEEEcCC----ccEEEECC
Confidence 444689999999995 33223 24799999999999999876 34456888889543 11113566
Q ss_pred CCCCCCCcccCHHHHHHHHHhhhcce-eecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHH
Q 007848 424 NGSNSYCEVEGIPGIMMAYTSALHNV-NLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVK 502 (587)
Q Consensus 424 ~~~~~~p~~~g~~~i~~~Y~~~~~~v-~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~ 502 (587)
+.|. + .+...+..+ ...|-|++...|..|.+.-++.. ....=.+++++|||.-.|-.+..+++..
T Consensus 66 T~D~--------~----~~~~~L~~~~~~~G~t~l~~aL~~A~~~l~~~~--~~~~~~iiil~sd~~~~~~~~~~~~~~~ 131 (183)
T cd01453 66 TGNP--------R----KHIQALKTARECSGEPSLQNGLEMALESLKHMP--SHGSREVLIIFSSLSTCDPGNIYETIDK 131 (183)
T ss_pred CCCH--------H----HHHHHhhcccCCCCchhHHHHHHHHHHHHhcCC--ccCceEEEEEEcCCCcCChhhHHHHHHH
Confidence 6643 1 334444443 45677999999998877665321 1123348889999887654433344444
Q ss_pred ccCCCeEEEEEecCCCCchhhhhcc
Q 007848 503 ASDLPLSILIIGVGGADFKEMEILD 527 (587)
Q Consensus 503 as~lPlSiiiVGvG~~~f~~m~~ld 527 (587)
+.+..+-|.+||+|.+ ...++++-
T Consensus 132 l~~~~I~v~~IgiG~~-~~~L~~ia 155 (183)
T cd01453 132 LKKENIRVSVIGLSAE-MHICKEIC 155 (183)
T ss_pred HHHcCcEEEEEEechH-HHHHHHHH
Confidence 5556788888999854 33455544
No 262
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=97.51 E-value=0.0011 Score=61.37 Aligned_cols=142 Identities=17% Similarity=0.189 Sum_probs=92.1
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p 430 (587)
+++|.||.|+| |... . +.+..++-.+++...+...|-++.||..+ . .++|- ....
T Consensus 2 ~vvilvD~S~S------------m~g~--~---~~~k~al~~~l~~L~~~d~fnii~f~~~~-~----~~~~~---~~~~ 56 (155)
T PF13768_consen 2 DVVILVDTSGS------------MSGE--K---ELVKDALRAILRSLPPGDRFNIIAFGSSV-R----PLFPG---LVPA 56 (155)
T ss_pred eEEEEEeCCCC------------CCCc--H---HHHHHHHHHHHHhCCCCCEEEEEEeCCEe-e----Ecchh---HHHH
Confidence 58899999997 3322 1 44444444555666666689999999861 0 11210 0001
Q ss_pred cccCHHHHHHHHHhhhcceee-cCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCc-CCHHHHHHHHHHccCCCe
Q 007848 431 EVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV-TDLQETKDALVKASDLPL 508 (587)
Q Consensus 431 ~~~g~~~i~~~Y~~~~~~v~~-~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i-~d~~~t~~~i~~as~lPl 508 (587)
-+.-++.-.+.+..++. .|.|++.+.++.|.+.- .....-..+++||||.. ...+++.+.+..+. -.+
T Consensus 57 ----~~~~~~~a~~~I~~~~~~~G~t~l~~aL~~a~~~~-----~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~-~~~ 126 (155)
T PF13768_consen 57 ----TEENRQEALQWIKSLEANSGGTDLLAALRAALALL-----QRPGCVRAIILLTDGQPVSGEEEILDLVRRAR-GHI 126 (155)
T ss_pred ----hHHHHHHHHHHHHHhcccCCCccHHHHHHHHHHhc-----ccCCCccEEEEEEeccCCCCHHHHHHHHHhcC-CCc
Confidence 11222333445566777 89999999999887653 13356778899999996 44567776666543 568
Q ss_pred EEEEEecCC-CCchhhhhcc
Q 007848 509 SILIIGVGG-ADFKEMEILD 527 (587)
Q Consensus 509 SiiiVGvG~-~~f~~m~~ld 527 (587)
.|..+|+|. .+-..|++|=
T Consensus 127 ~i~~~~~g~~~~~~~L~~LA 146 (155)
T PF13768_consen 127 RIFTFGIGSDADADFLRELA 146 (155)
T ss_pred eEEEEEECChhHHHHHHHHH
Confidence 888899998 4777777776
No 263
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=97.46 E-value=0.003 Score=60.24 Aligned_cols=144 Identities=18% Similarity=0.172 Sum_probs=90.3
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 007848 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (587)
Q Consensus 352 ~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~-~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p 430 (587)
+++.||.|+| |.. .+..+.|..++..++. .+..+-.+-++.|.... ....+|+..
T Consensus 3 v~lvlD~SgS------------M~~---~~rl~~ak~a~~~~~~~~~~~~d~v~lv~F~~~~----~~~~~~~t~----- 58 (178)
T cd01451 3 VIFVVDASGS------------MAA---RHRMAAAKGAVLSLLRDAYQRRDKVALIAFRGTE----AEVLLPPTR----- 58 (178)
T ss_pred EEEEEECCcc------------CCC---ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCCC----ceEEeCCCC-----
Confidence 6789999996 431 2456677666666664 34445568899997541 112244332
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcC---C-HHHH-HHHHHHccC
Q 007848 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---D-LQET-KDALVKASD 505 (587)
Q Consensus 431 ~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~---d-~~~t-~~~i~~as~ 505 (587)
+.+.+ .+.+..+...|-|++..-|..+.+..+.. ......-.++++||||.-+ | .... .++..++..
T Consensus 59 ---~~~~~----~~~l~~l~~~G~T~l~~aL~~a~~~l~~~-~~~~~~~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~ 130 (178)
T cd01451 59 ---SVELA----KRRLARLPTGGGTPLAAGLLAAYELAAEQ-ARDPGQRPLIVVITDGRANVGPDPTADRALAAARKLRA 130 (178)
T ss_pred ---CHHHH----HHHHHhCCCCCCCcHHHHHHHHHHHHHHH-hcCCCCceEEEEECCCCCCCCCCchhHHHHHHHHHHHh
Confidence 22333 24566677889999999999999887221 1122234799999999865 2 2233 444455556
Q ss_pred CCeEEEEEecCCCC--chhhhhcc
Q 007848 506 LPLSILIIGVGGAD--FKEMEILD 527 (587)
Q Consensus 506 lPlSiiiVGvG~~~--f~~m~~ld 527 (587)
.++.|+.||+|..+ -..|++|=
T Consensus 131 ~gi~v~~I~~~~~~~~~~~l~~iA 154 (178)
T cd01451 131 RGISALVIDTEGRPVRRGLAKDLA 154 (178)
T ss_pred cCCcEEEEeCCCCccCccHHHHHH
Confidence 78888999998753 44566665
No 264
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=97.44 E-value=0.0024 Score=63.36 Aligned_cols=145 Identities=19% Similarity=0.239 Sum_probs=92.3
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d---~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
+.+++.||-|+| +. ...++++...+..++..++.. -++-+.-|+.. +.-.|+|+-.
T Consensus 3 ~DlvfllD~S~S------------m~----~~~~~~~k~f~~~l~~~l~~~~~~~rvglv~fs~~-----~~~~~~l~~~ 61 (224)
T cd01475 3 TDLVFLIDSSRS------------VR----PENFELVKQFLNQIIDSLDVGPDATRVGLVQYSST-----VKQEFPLGRF 61 (224)
T ss_pred ccEEEEEeCCCC------------CC----HHHHHHHHHHHHHHHHhcccCCCccEEEEEEecCc-----eeEEeccccc
Confidence 578999999986 43 346788888888888888654 36888888876 2234776521
Q ss_pred CCCCcccCHHHHHHHHHhhhcceee-cCCCChHHHHHHHHHHHHhh-hccCCC---ceEEEEEEeCCCcCC-HHHHHHHH
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNL-AGPTLFGPVISNAALIAGQS-LANHGQ---KYFVLLIITDGVVTD-LQETKDAL 500 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~-~gpt~f~~ii~~~~~~a~~~-~~~~~~---~y~vlliltdG~i~d-~~~t~~~i 500 (587)
...+.+.++- ..++. .|.|+..-.|+.+.+.+-.. ...... .-.++++||||.-.| ..+..+.+
T Consensus 62 ------~~~~~l~~~i----~~i~~~~~~t~tg~AL~~a~~~~~~~~~g~r~~~~~~~kvvillTDG~s~~~~~~~a~~l 131 (224)
T cd01475 62 ------KSKADLKRAV----RRMEYLETGTMTGLAIQYAMNNAFSEAEGARPGSERVPRVGIVVTDGRPQDDVSEVAAKA 131 (224)
T ss_pred ------CCHHHHHHHH----HhCcCCCCCChHHHHHHHHHHHhCChhcCCCCCCCCCCeEEEEEcCCCCcccHHHHHHHH
Confidence 1223444443 33443 45677776677776543211 001111 257999999998754 44444433
Q ss_pred HHccCCCeEEEEEecCCCCchhhhhccc
Q 007848 501 VKASDLPLSILIIGVGGADFKEMEILDA 528 (587)
Q Consensus 501 ~~as~lPlSiiiVGvG~~~f~~m~~ld~ 528 (587)
-..-+.|..||||+.+...|+.+-+
T Consensus 132 ---k~~gv~i~~VgvG~~~~~~L~~ias 156 (224)
T cd01475 132 ---RALGIEMFAVGVGRADEEELREIAS 156 (224)
T ss_pred ---HHCCcEEEEEeCCcCCHHHHHHHhC
Confidence 3567899999999988777777764
No 265
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=97.42 E-value=0.0024 Score=60.89 Aligned_cols=139 Identities=22% Similarity=0.231 Sum_probs=92.9
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCC---CCcceeeecccCCCCCceeEEeCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSD---KRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d---~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
+.+++.||=|+| +. +..|+++...+..++..++.+ -++-+..|+.. +.-.|+|+.
T Consensus 1 ~Di~fvlD~S~S------------~~----~~~f~~~k~fi~~~i~~l~~~~~~~rvgvv~fs~~-----~~~~~~l~~- 58 (177)
T cd01469 1 MDIVFVLDGSGS------------IY----PDDFQKVKNFLSTVMKKLDIGPTKTQFGLVQYSES-----FRTEFTLNE- 58 (177)
T ss_pred CcEEEEEeCCCC------------CC----HHHHHHHHHHHHHHHHHcCcCCCCcEEEEEEECCc-----eeEEEecCc-
Confidence 457899998886 33 356888888888888888763 46777777765 233577752
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHh-hhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccC
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQ-SLANHGQKYFVLLIITDGVVTDLQETKDALVKASD 505 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~-~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~ 505 (587)
.. ..+.++++-+. ++ .+.|.|+....|+.|.+..-. ........--++++||||.-+|-..+.+++..|-.
T Consensus 59 ~~-----~~~~~~~~i~~-~~--~~~g~T~~~~AL~~a~~~l~~~~~g~R~~~~kv~illTDG~~~~~~~~~~~~~~~k~ 130 (177)
T cd01469 59 YR-----TKEEPLSLVKH-IS--QLLGLTNTATAIQYVVTELFSESNGARKDATKVLVVITDGESHDDPLLKDVIPQAER 130 (177)
T ss_pred cC-----CHHHHHHHHHh-Cc--cCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEeCCCCCCccccHHHHHHHHH
Confidence 22 23344443322 22 256789999999888876421 11123346778999999998776555555555656
Q ss_pred CCeEEEEEecCCC
Q 007848 506 LPLSILIIGVGGA 518 (587)
Q Consensus 506 lPlSiiiVGvG~~ 518 (587)
..+.|..||||+.
T Consensus 131 ~gv~v~~Vgvg~~ 143 (177)
T cd01469 131 EGIIRYAIGVGGH 143 (177)
T ss_pred CCcEEEEEEeccc
Confidence 7899999999985
No 266
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.40 E-value=0.0028 Score=58.56 Aligned_cols=133 Identities=13% Similarity=0.113 Sum_probs=79.3
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p 430 (587)
.++++||.|+| |... +.-....++..++..+.. .+..+-++.|+.. . ...++.+
T Consensus 2 ~v~illD~SgS------------M~~~-k~~~a~~~~~~l~~~~~~--~~~~v~li~F~~~-~-----~~~~~~~----- 55 (152)
T cd01462 2 PVILLVDQSGS------------MYGA-PEEVAKAVALALLRIALA--ENRDTYLILFDSE-F-----QTKIVDK----- 55 (152)
T ss_pred CEEEEEECCCC------------CCCC-HHHHHHHHHHHHHHHHHH--cCCcEEEEEeCCC-c-----eEEecCC-----
Confidence 37899999997 3322 223334455555555544 2345889999876 1 1122221
Q ss_pred cccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCC-CcCCHHHHHHHHHHccCCCeE
Q 007848 431 EVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG-VVTDLQETKDALVKASDLPLS 509 (587)
Q Consensus 431 ~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG-~i~d~~~t~~~i~~as~lPlS 509 (587)
-..+..+++. +..+...|.|++++.+..+.+..++. ...-.+++||||| +-.+-.+..++...+..-.+-
T Consensus 56 -~~~~~~~~~~----l~~~~~~ggT~l~~al~~a~~~l~~~----~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~ 126 (152)
T cd01462 56 -TDDLEEPVEF----LSGVQLGGGTDINKALRYALELIERR----DPRKADIVLITDGYEGGVSDELLREVELKRSRVAR 126 (152)
T ss_pred -cccHHHHHHH----HhcCCCCCCcCHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCCCCHHHHHHHHHHHhcCcE
Confidence 1233444443 44556789999999999998876642 1223589999999 444555554333333344567
Q ss_pred EEEEecCCC
Q 007848 510 ILIIGVGGA 518 (587)
Q Consensus 510 iiiVGvG~~ 518 (587)
|..||||++
T Consensus 127 v~~~~~g~~ 135 (152)
T cd01462 127 FVALALGDH 135 (152)
T ss_pred EEEEEecCC
Confidence 777788764
No 267
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=97.36 E-value=0.0049 Score=59.23 Aligned_cols=166 Identities=16% Similarity=0.162 Sum_probs=107.0
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccc---cCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 007848 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVY---DSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (587)
Q Consensus 352 ~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~y---d~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~ 428 (587)
.+++||.|.|- . ..+..+|.++.+..++..++..| .+..++=+..|+++ ...-..|+++|
T Consensus 6 ~vi~lD~S~sM---------~--a~D~~PnRL~aak~~i~~~~~~f~~~np~~~vGlv~fag~----~a~v~~plT~D-- 68 (187)
T cd01452 6 TMICIDNSEYM---------R--NGDYPPTRFQAQADAVNLICQAKTRSNPENNVGLMTMAGN----SPEVLVTLTND-- 68 (187)
T ss_pred EEEEEECCHHH---------H--cCCCCCCHHHHHHHHHHHHHHHHHhcCCCccEEEEEecCC----ceEEEECCCCC--
Confidence 57999999962 1 22336899999999998887333 23456778888774 12223566664
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCe
Q 007848 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPL 508 (587)
Q Consensus 429 ~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPl 508 (587)
..+-...+..+.+.|.++|...|+.|...-+... ...+.--|+++++++.-+|.++..+++.++.+..+
T Consensus 69 ----------~~~~~~~L~~i~~~g~~~l~~AL~~A~~~L~~~~-~~~~~~rivi~v~S~~~~d~~~i~~~~~~lkk~~I 137 (187)
T cd01452 69 ----------QGKILSKLHDVQPKGKANFITGIQIAQLALKHRQ-NKNQKQRIVAFVGSPIEEDEKDLVKLAKRLKKNNV 137 (187)
T ss_pred ----------HHHHHHHHHhCCCCCcchHHHHHHHHHHHHhcCC-CcCCcceEEEEEecCCcCCHHHHHHHHHHHHHcCC
Confidence 2333555667778899999988887766544321 12233466777777755677777777777778889
Q ss_pred EEEEEecCCC--CchhhhhcccCCCcccccCCCCccccceeeeeeCcccC
Q 007848 509 SILIIGVGGA--DFKEMEILDADKGERLESSTGRVASRDIVQFVPLKDVQ 556 (587)
Q Consensus 509 SiiiVGvG~~--~f~~m~~ld~d~~~~l~~~~g~~~~rd~vqFv~~~~~~ 556 (587)
.|-|||+|+. +-+.++.|- +. +++ -|+-+||....-.
T Consensus 138 ~v~vI~~G~~~~~~~~l~~~~-~~----~~~------~~~s~~~~~~~~~ 176 (187)
T cd01452 138 SVDIINFGEIDDNTEKLTAFI-DA----VNG------KDGSHLVSVPPGE 176 (187)
T ss_pred eEEEEEeCCCCCCHHHHHHHH-HH----hcC------CCCceEEEeCCCC
Confidence 9999999976 334444444 21 111 2567888876644
No 268
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=97.33 E-value=0.0037 Score=59.34 Aligned_cols=150 Identities=18% Similarity=0.160 Sum_probs=86.1
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSY 429 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~ 429 (587)
++++++||.|.|=..... . ..+..+.|...+...+.... +..+-++.|+.... ..+++.
T Consensus 3 ~~vv~vlD~S~SM~~~~~---------~-~~~r~~~a~~~~~~~~~~~~-~~~v~lv~f~~~~~-----~~~~~~----- 61 (180)
T cd01467 3 RDIMIALDVSGSMLAQDF---------V-KPSRLEAAKEVLSDFIDRRE-NDRIGLVVFAGAAF-----TQAPLT----- 61 (180)
T ss_pred ceEEEEEECCcccccccC---------C-CCCHHHHHHHHHHHHHHhCC-CCeEEEEEEcCCee-----eccCCC-----
Confidence 578999999997321110 0 12344555555556666544 44688999987511 112222
Q ss_pred CcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHH-HHHHHHHHccCCCe
Q 007848 430 CEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ-ETKDALVKASDLPL 508 (587)
Q Consensus 430 p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~-~t~~~i~~as~lPl 508 (587)
.+...+.+ +-..+......|+|++..-|..+.+...+. .....++++||||.-++-. ...++...+....+
T Consensus 62 ---~~~~~~~~-~l~~l~~~~~~g~T~l~~al~~a~~~l~~~----~~~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi 133 (180)
T cd01467 62 ---LDRESLKE-LLEDIKIGLAGQGTAIGDAIGLAIKRLKNS----EAKERVIVLLTDGENNAGEIDPATAAELAKNKGV 133 (180)
T ss_pred ---ccHHHHHH-HHHHhhhcccCCCCcHHHHHHHHHHHHHhc----CCCCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCC
Confidence 12222222 222233334578899988888888766532 2334799999999764321 11222233345678
Q ss_pred EEEEEecCC------------CCchhhhhccc
Q 007848 509 SILIIGVGG------------ADFKEMEILDA 528 (587)
Q Consensus 509 SiiiVGvG~------------~~f~~m~~ld~ 528 (587)
.|..||+|. .+.+.|+.|=.
T Consensus 134 ~i~~i~ig~~~~~~~~~~~~~~~~~~l~~la~ 165 (180)
T cd01467 134 RIYTIGVGKSGSGPKPDGSTILDEDSLVEIAD 165 (180)
T ss_pred EEEEEEecCCCCCcCCCCcccCCHHHHHHHHH
Confidence 888899987 46666776663
No 269
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=97.31 E-value=0.0031 Score=63.95 Aligned_cols=142 Identities=15% Similarity=0.193 Sum_probs=92.9
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~ 428 (587)
+.++++|||-|.| +..-+. .++..+ |+..|.+.+..-.. .++-+.+||+.+. ...|++-+.
T Consensus 60 ~~qIvlaID~S~S---------M~~~~~--~~~ale-ak~lIs~al~~Le~-g~vgVv~Fg~~~~-----~v~Plt~d~- 120 (266)
T cd01460 60 DYQILIAIDDSKS---------MSENNS--KKLALE-SLCLVSKALTLLEV-GQLGVCSFGEDVQ-----ILHPFDEQF- 120 (266)
T ss_pred CceEEEEEecchh---------cccccc--cccHHH-HHHHHHHHHHhCcC-CcEEEEEeCCCce-----EeCCCCCCc-
Confidence 4789999999996 322111 356666 89999999988765 4599999999731 112333211
Q ss_pred CCcccCHHHHHHHHHhhhcceeec-CCCChHHHHHHHHHHHHhhhccCCC--ceEEEEEEeCCCcCCHHHHHHH-HHHcc
Q 007848 429 YCEVEGIPGIMMAYTSALHNVNLA-GPTLFGPVISNAALIAGQSLANHGQ--KYFVLLIITDGVVTDLQETKDA-LVKAS 504 (587)
Q Consensus 429 ~p~~~g~~~i~~~Y~~~~~~v~~~-gpt~f~~ii~~~~~~a~~~~~~~~~--~y~vlliltdG~i~d~~~t~~~-i~~as 504 (587)
+. ++.-+.+....+. +-|+++..|..+.+.-.....+... .--++||||||...|-+...+. +.+|.
T Consensus 121 --------~~-~a~~~~l~~~~f~~~~Tni~~aL~~a~~~f~~~~~~~~s~~~~qlilLISDG~~~~~e~~~~~~~r~a~ 191 (266)
T cd01460 121 --------SS-QSGPRILNQFTFQQDKTDIANLLKFTAQIFEDARTQSSSGSLWQLLLIISDGRGEFSEGAQKVRLREAR 191 (266)
T ss_pred --------hh-hHHHHHhCcccCCCCCCcHHHHHHHHHHHHHhhhccccccccccEEEEEECCCcccCccHHHHHHHHHH
Confidence 11 2333344444444 4589999999998876543111111 2379999999996665555544 77777
Q ss_pred CCCeEEEEEecCCC
Q 007848 505 DLPLSILIIGVGGA 518 (587)
Q Consensus 505 ~lPlSiiiVGvG~~ 518 (587)
.-.+.+++|||-+.
T Consensus 192 e~~i~l~~I~ld~~ 205 (266)
T cd01460 192 EQNVFVVFIIIDNP 205 (266)
T ss_pred HcCCeEEEEEEcCC
Confidence 88999999999664
No 270
>PF00092 VWA: von Willebrand factor type A domain; InterPro: IPR002035 The von Willebrand factor is a large multimeric glycoprotein found in blood plasma. Mutant forms are involved in the aetiology of bleeding disorders []. In von Willebrand factor, the type A domain (vWF) is the prototype for a protein superfamily. The vWF domain is found in various plasma proteins: complement factors B, C2, CR3 and CR4; the integrins (I-domains); collagen types VI, VII, XII and XIV; and other extracellular proteins [, , ]. Although the majority of VWA-containing proteins are extracellular, the most ancient ones present in all eukaryotes are all intracellular proteins involved in functions such as transcription, DNA repair, ribosomal and membrane transport and the proteasome. A common feature appears to be involvement in multiprotein complexes. Proteins that incorporate vWF domains participate in numerous biological events (e.g. cell adhesion, migration, homing, pattern formation, and signal transduction), involving interaction with a large array of ligands []. A number of human diseases arise from mutations in VWA domains. Secondary structure prediction from 75 aligned vWF sequences has revealed a largely alternating sequence of alpha-helices and beta-strands []. Fold recognition algorithms were used to score sequence compatibility with a library of known structures: the vWF domain fold was predicted to be a doubly-wound, open, twisted beta-sheet flanked by alpha-helices []. 3D structures have been determined for the I-domains of integrins CD11b (with bound magnesium) [] and CD11a (with bound manganese) []. The domain adopts a classic alpha/beta Rossmann fold and contains an unusual metal ion coordination site at its surface. It has been suggested that this site represents a general metal ion-dependent adhesion site (MIDAS) for binding protein ligands []. The residues constituting the MIDAS motif in the CD11b and CD11a I-domains are completely conserved, but the manner in which the metal ion is coordinated differs slightly [].; GO: 0005515 protein binding; PDB: 2XGG_B 3ZQK_B 3GXB_A 3PPV_A 3PPX_A 3PPW_A 3PPY_A 1CQP_B 3TCX_B 2ICA_A ....
Probab=97.16 E-value=0.0033 Score=58.99 Aligned_cols=149 Identities=18% Similarity=0.234 Sum_probs=91.5
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc---cccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ---VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~---~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
++++.||-|+| +. ...++++...+..++. ..+..-++.+.-||.. ....|+++..
T Consensus 1 DivflvD~S~s------------m~----~~~~~~~~~~v~~~i~~~~~~~~~~rv~iv~f~~~-----~~~~~~~~~~- 58 (178)
T PF00092_consen 1 DIVFLVDTSGS------------MS----GDNFEKAKQFVKSIISRLSISNNGTRVGIVTFSDS-----ARVLFSLTDY- 58 (178)
T ss_dssp EEEEEEE-STT------------SC----HHHHHHHHHHHHHHHHHSTBSTTSEEEEEEEESSS-----EEEEEETTSH-
T ss_pred CEEEEEeCCCC------------Cc----hHHHHHHHHHHHHHHHhhhccccccccceeeeecc-----cccccccccc-
Confidence 47899999997 32 2345556666666666 4455566777788775 2234555421
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhh-hccCCCceEEEEEEeCCCcCCHHHHHHHHHHccC-
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS-LANHGQKYFVLLIITDGVVTDLQETKDALVKASD- 505 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~-~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~- 505 (587)
...+.++++- .......+|.|+++..|++|.+.-... .........++++||||...+-..........-.
T Consensus 59 -----~~~~~~~~~i--~~~~~~~~g~t~~~~aL~~a~~~l~~~~~~~r~~~~~~iiliTDG~~~~~~~~~~~~~~~~~~ 131 (178)
T PF00092_consen 59 -----QSKNDLLNAI--NDSIPSSGGGTNLGAALKFAREQLFSSNNGGRPNSPKVIILITDGNSNDSDSPSEEAANLKKS 131 (178)
T ss_dssp -----SSHHHHHHHH--HTTGGCCBSSB-HHHHHHHHHHHTTSGGGTTGTTSEEEEEEEESSSSSSHSGHHHHHHHHHHH
T ss_pred -----cccccccccc--cccccccchhhhHHHHHhhhhhcccccccccccccccceEEEEeecccCCcchHHHHHHHHHh
Confidence 2223333332 234445678999999999998875432 1124578999999999999887544333333332
Q ss_pred CCeEEEEEecCCCCchhhhhccc
Q 007848 506 LPLSILIIGVGGADFKEMEILDA 528 (587)
Q Consensus 506 lPlSiiiVGvG~~~f~~m~~ld~ 528 (587)
.-+.++.||+++.+=..++.|-+
T Consensus 132 ~~i~~~~ig~~~~~~~~l~~la~ 154 (178)
T PF00092_consen 132 NGIKVIAIGIDNADNEELRELAS 154 (178)
T ss_dssp CTEEEEEEEESCCHHHHHHHHSH
T ss_pred cCcEEEEEecCcCCHHHHHHHhC
Confidence 57777777775567777777764
No 271
>PLN02352 phospholipase D epsilon
Probab=97.07 E-value=0.0042 Score=70.75 Aligned_cols=168 Identities=14% Similarity=0.135 Sum_probs=109.2
Q ss_pred CcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccccccccccccccceee
Q 007848 68 DPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATC 147 (587)
Q Consensus 68 DPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i 147 (587)
||||.|.+.. ..++|| .+.-||.|+|.|.+.+.-.....+.|.|-| . ..+||.+.+
T Consensus 37 ~~y~tv~~~~-----~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~--~--------------~~~ig~~~~ 92 (758)
T PLN02352 37 ATYVTIKIGN-----KKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT--K--------------CSILGRFHI 92 (758)
T ss_pred CceEEEEeCC-----cEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec--C--------------CeEEEEEEE
Confidence 9999999964 269999 667799999999987665443478888877 1 368999999
Q ss_pred ecchhhccCC-eeEEEEccccccccccccccCCCCCCCCcccEEEeecceeccccccceeeeccccCCcCCCCCCCCcEE
Q 007848 148 TLSQIVTRKN-RSLTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECINSKTTTELILRCSDLDCKDLFSRNDPFL 226 (587)
Q Consensus 148 ~L~~l~~~~~-~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~~~~l~v~vi~a~~L~~~d~~g~sDPyv 226 (587)
++.+|..... -.-|+++.+ ..+ ++....+|++++.+.+-..... -++.+...+..|.+..|+
T Consensus 93 p~~~~~~g~~~~~~~~~~~~-----------~~~--~p~~~~~~~~~~~~~~~~~~~~----~~~g~~~~~~~gvp~~~f 155 (758)
T PLN02352 93 QAHQIVTEASFINGFFPLIM-----------ENG--KPNPELKLRFMLWFRPAELEPT----WCKILENGSFQGLRNATF 155 (758)
T ss_pred EHHHhhCCCcccceEEEccc-----------CCC--CCCCCCEEEEEEEEEEhhhCcc----hhhcccCCCcCCcCCccc
Confidence 9999987644 567999865 221 1111157888877765433211 122333335567766666
Q ss_pred EEEEEcCCCceeeEEecceecCCCCCcee----e---ceEEeeecCCCCCcEEEEEEeccC
Q 007848 227 VISKIVESGTHIPVCKTEVLKNETKPTWK----S---VFLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 227 ~v~~~~~~g~~~~~~kT~vik~tlnP~Wn----e---f~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
.... |..+..|+-..+..+.-|.-. . |.--.+.+......|.|.-|+.+.
T Consensus 156 ~~r~----g~~v~lyqdah~~~~~~p~i~l~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~ 212 (758)
T PLN02352 156 PQRS----NCHVILYQDAHHCSTFQPPVDLCGSPRKLWEDVYKAIEGAKHLIYIAGWSFNP 212 (758)
T ss_pred ccCC----CCEEEEEecCCCccccCCcceeecCHHHHHHHHHHHHHhhccEEEEEEEEecC
Confidence 6433 445778888777777666421 1 111112222346788999998876
No 272
>PRK13685 hypothetical protein; Provisional
Probab=97.06 E-value=0.008 Score=63.15 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=92.6
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~ 428 (587)
..+++++||-|+| +...+. .++..+.|-.++..+++...++.++-++.|++... . ..|++.|
T Consensus 88 ~~~vvlvlD~S~S---------M~~~D~--~p~RL~~ak~~~~~~l~~l~~~d~vglv~Fa~~a~--~---~~p~t~d-- 149 (326)
T PRK13685 88 RAVVMLVIDVSQS---------MRATDV--EPNRLAAAQEAAKQFADELTPGINLGLIAFAGTAT--V---LVSPTTN-- 149 (326)
T ss_pred CceEEEEEECCcc---------ccCCCC--CCCHHHHHHHHHHHHHHhCCCCCeEEEEEEcCcee--e---cCCCCCC--
Confidence 3678999999996 322221 36888899999999999986677799999998621 0 1233321
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhh---hc-cCCCceEEEEEEeCCCcCCH------HHHHH
Q 007848 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQS---LA-NHGQKYFVLLIITDGVVTDL------QETKD 498 (587)
Q Consensus 429 ~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~---~~-~~~~~y~vlliltdG~i~d~------~~t~~ 498 (587)
.++-...+..++..+-|+...-|..|.+.+++. .. ......-.+++||||.-+.- ....+
T Consensus 150 ----------~~~l~~~l~~l~~~~~T~~g~al~~A~~~l~~~~~~~~~~~~~~~~~IILlTDG~~~~~~~~~~~~~~~~ 219 (326)
T PRK13685 150 ----------REATKNAIDKLQLADRTATGEAIFTALQAIATVGAVIGGGDTPPPARIVLMSDGKETVPTNPDNPRGAYT 219 (326)
T ss_pred ----------HHHHHHHHHhCCCCCCcchHHHHHHHHHHHHhhhcccccccCCCCCEEEEEcCCCCCCCCCCCCcccHHH
Confidence 223344556667778888888888888776532 00 01223456789999975421 22234
Q ss_pred HHHHccCCCeEEEEEecCCC
Q 007848 499 ALVKASDLPLSILIIGVGGA 518 (587)
Q Consensus 499 ~i~~as~lPlSiiiVGvG~~ 518 (587)
+...|.+.++.|.+||+|..
T Consensus 220 aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 220 AARTAKDQGVPISTISFGTP 239 (326)
T ss_pred HHHHHHHcCCeEEEEEECCC
Confidence 55556677888888999874
No 273
>PLN02352 phospholipase D epsilon
Probab=97.01 E-value=0.0054 Score=69.90 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=59.9
Q ss_pred CcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhhcc
Q 007848 223 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKLH 301 (587)
Q Consensus 223 DPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~~ 301 (587)
|||+.|.+.. ..+-|| .+.-||+|+| |.+++... .+..+.|.|.| + ..+||.+.+++.+|....
T Consensus 37 ~~y~tv~~~~-----~~v~rt---~~~~~p~w~e~f~i~~ah~--~~~~~~f~vk~----~-~~~ig~~~~p~~~~~~g~ 101 (758)
T PLN02352 37 ATYVTIKIGN-----KKVAKT---SHEYDRVWNQTFQILCAHP--LDSTITITLKT----K-CSILGRFHIQAHQIVTEA 101 (758)
T ss_pred CceEEEEeCC-----cEEecC---CCCCCCccccceeEEeeee--cCCcEEEEEec----C-CeEEEEEEEEHHHhhCCC
Confidence 9999999943 357788 5667999999 88888643 23579999988 2 589999999999997543
Q ss_pred C-CCceeEeecccc
Q 007848 302 S-SGQGQNLFLSTA 314 (587)
Q Consensus 302 ~-~~~~~~l~~~~k 314 (587)
. ...|+++++...
T Consensus 102 ~~~~~~~~~~~~~~ 115 (758)
T PLN02352 102 SFINGFFPLIMENG 115 (758)
T ss_pred cccceEEEcccCCC
Confidence 3 457899988664
No 274
>PLN02964 phosphatidylserine decarboxylase
Probab=96.89 E-value=0.0015 Score=73.69 Aligned_cols=85 Identities=21% Similarity=0.287 Sum_probs=62.4
Q ss_pred cccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEecc
Q 007848 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFN 279 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d 279 (587)
+-..+.+++|+ |++ .|||+.+.-.+ .+++||.+.++|+||+||+ -.+.+...+ -....|.|||++
T Consensus 54 ~~~~~~~~~~~----~~~---~~~~~~~~~~g-----~~~f~t~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~ 119 (644)
T PLN02964 54 GIALLTLVGAE----MKF---KDKWLACVSFG-----EQTFRTETSDSTDKPVWNSEKKLLLEKNG--PHLARISVFETN 119 (644)
T ss_pred CeEEEEeehhh----hcc---CCcEEEEEEec-----ceeeeeccccccCCcccchhhceEeccCC--cceEEEEEEecC
Confidence 33445556666 333 58998876544 2489999999999999998 233333222 234699999999
Q ss_pred CCCCCceeEEEEEechhhhh
Q 007848 280 SNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 280 ~~~~dd~IG~~~i~l~~l~~ 299 (587)
...+++++|.|++++.++..
T Consensus 120 ~~s~n~lv~~~e~~~t~f~~ 139 (644)
T PLN02964 120 RLSKNTLVGYCELDLFDFVT 139 (644)
T ss_pred CCCHHHhhhheeecHhhccH
Confidence 99999999999999988864
No 275
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=96.87 E-value=0.03 Score=52.75 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=93.6
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccC---CCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDS---DKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~---d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
.+++.+|=|.| +. ...|+++..-+.+++..|+- .-++.+.-|+.. ....|.|+..
T Consensus 2 DivfllD~S~S------------i~----~~~f~~~k~fi~~lv~~f~i~~~~~rVgvv~ys~~-----~~~~~~l~~~- 59 (165)
T cd01481 2 DIVFLIDGSDN------------VG----SGNFPAIRDFIERIVQSLDVGPDKIRVAVVQFSDT-----PRPEFYLNTH- 59 (165)
T ss_pred CEEEEEeCCCC------------cC----HHHHHHHHHHHHHHHhhccCCCCCcEEEEEEecCC-----eeEEEecccc-
Confidence 46889998886 32 36778888888888888874 345767777665 2335777532
Q ss_pred CCCcccCHHHHHHHHHhhhcceee-cC-CCChHHHHHHHHHHHHhhhc---cCCCceEEEEEEeCCCcCC-HHHHHHHHH
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNL-AG-PTLFGPVISNAALIAGQSLA---NHGQKYFVLLIITDGVVTD-LQETKDALV 501 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~-~g-pt~f~~ii~~~~~~a~~~~~---~~~~~y~vlliltdG~i~d-~~~t~~~i~ 501 (587)
. ..++++++-. .+++ .| .|+-...|+.+.+..-.... .+....-+|++||||.-.| ..+-.+.+.
T Consensus 60 ~-----~~~~l~~~i~----~i~~~~g~~t~t~~AL~~~~~~~f~~~~g~R~~~~~~kv~vviTdG~s~d~~~~~a~~lr 130 (165)
T cd01481 60 S-----TKADVLGAVR----RLRLRGGSQLNTGSALDYVVKNLFTKSAGSRIEEGVPQFLVLITGGKSQDDVERPAVALK 130 (165)
T ss_pred C-----CHHHHHHHHH----hcccCCCCcccHHHHHHHHHHhhcCccccCCccCCCCeEEEEEeCCCCcchHHHHHHHHH
Confidence 1 3355555443 3444 35 47888888887764332110 1134578999999998765 334444444
Q ss_pred HccCCCeEEEEEecCCCCchhhhhcccC
Q 007848 502 KASDLPLSILIIGVGGADFKEMEILDAD 529 (587)
Q Consensus 502 ~as~lPlSiiiVGvG~~~f~~m~~ld~d 529 (587)
+..+-|+.||+|..+.+.|+.+-++
T Consensus 131 ---~~gv~i~~vG~~~~~~~eL~~ias~ 155 (165)
T cd01481 131 ---RAGIVPFAIGARNADLAELQQIAFD 155 (165)
T ss_pred ---HCCcEEEEEeCCcCCHHHHHHHhCC
Confidence 4568889999998888877777754
No 276
>PLN02964 phosphatidylserine decarboxylase
Probab=96.79 E-value=0.0017 Score=73.30 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=59.0
Q ss_pred CCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCcccccccccccccccccccee
Q 007848 67 SDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEAT 146 (587)
Q Consensus 67 sDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~ 146 (587)
+|||..+..-+ + +++||++.++|+||+|++.-.|.+........+|.|||++.. +.++++|.|+
T Consensus 68 ~~~~~~~~~~g---~--~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------s~n~lv~~~e 131 (644)
T PLN02964 68 KDKWLACVSFG---E--QTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRL-----------SKNTLVGYCE 131 (644)
T ss_pred CCcEEEEEEec---c--eeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCC-----------CHHHhhhhee
Confidence 58987765543 2 799999999999999999888777666666679999999976 7899999999
Q ss_pred eecchhhc
Q 007848 147 CTLSQIVT 154 (587)
Q Consensus 147 i~L~~l~~ 154 (587)
++|.++..
T Consensus 132 ~~~t~f~~ 139 (644)
T PLN02964 132 LDLFDFVT 139 (644)
T ss_pred ecHhhccH
Confidence 98866544
No 277
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=96.61 E-value=0.056 Score=53.24 Aligned_cols=153 Identities=6% Similarity=0.035 Sum_probs=95.9
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCCCC--CceeEEeCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPIDG--PVSHCFNLNG 425 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~---yd~d~~~~~~gFG~~~~~~--~~~~~f~l~~ 425 (587)
.++++||.|.| ++.......++..+.|+..+..++++ ..+.-.+-++.||.....+ ...|++.+..
T Consensus 3 ~ivf~iDvS~S---------M~~~~~~~~~s~l~~a~~~i~~~~~~ki~~~~~D~vGlilf~t~~~~~~~~~~~i~v~~~ 73 (218)
T cd01458 3 SVVFLVDVSPS---------MFESKDGEYESPFEEALKCIRQLMKSKIISSPKDLVGVVFYGTEESKNPVGYENIYVLLD 73 (218)
T ss_pred EEEEEEeCCHH---------HcCCCCCCCCChHHHHHHHHHHHHHhceeCCCCCeEEEEEEcccCCCCcCCCCceEEeec
Confidence 47899999984 44111111368999999999999997 5666679999999973222 3456665532
Q ss_pred CCCCCcccCHHHHHHHHHhhhccee--------ecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcC------
Q 007848 426 SNSYCEVEGIPGIMMAYTSALHNVN--------LAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT------ 491 (587)
Q Consensus 426 ~~~~p~~~g~~~i~~~Y~~~~~~v~--------~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~------ 491 (587)
..-|. . ..++.+.+.+..-. -++.|.|...|..|.+.-.+. ..+..=-.+++||||+=.
T Consensus 74 -l~~~~---~-~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~aL~~a~~~~~~~--~~~~~~k~IvL~TDg~~p~~~~~~ 146 (218)
T cd01458 74 -LDTPG---A-ERVEDLKELIEPGGLSFAGQVGDSGQVSLSDALWVCLDLFSKG--KKKKSHKRIFLFTNNDDPHGGDSI 146 (218)
T ss_pred -CCCCC---H-HHHHHHHHHhhcchhhhcccCCCCCCccHHHHHHHHHHHHHhc--cccccccEEEEECCCCCCCCCCHH
Confidence 11222 2 33344444333221 245688999998888765541 111223578999999643
Q ss_pred CHHHHHHHHHHccCCCeEEEEEecCCCC
Q 007848 492 DLQETKDALVKASDLPLSILIIGVGGAD 519 (587)
Q Consensus 492 d~~~t~~~i~~as~lPlSiiiVGvG~~~ 519 (587)
+.++....+.+.....+.|..||+|..+
T Consensus 147 ~~~~~~~~a~~l~~~gI~i~~i~i~~~~ 174 (218)
T cd01458 147 KDSQAAVKAEDLKDKGIELELFPLSSPG 174 (218)
T ss_pred HHHHHHHHHHHHHhCCcEEEEEecCCCC
Confidence 1234445555566678999999998764
No 278
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=96.60 E-value=0.031 Score=63.45 Aligned_cols=148 Identities=16% Similarity=0.066 Sum_probs=93.6
Q ss_pred CcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc-ccCCCCcceeeecccCCCCCceeEEeCC
Q 007848 346 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV-YDSDKRFPAWGFGARPIDGPVSHCFNLN 424 (587)
Q Consensus 346 ~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~-yd~d~~~~~~gFG~~~~~~~~~~~f~l~ 424 (587)
......++|.||.|+| |. .+..++|-.++..++.. |-..-.+-++.|++.. ....++.
T Consensus 404 ~~~~~~v~fvvD~SGS------------M~----~~rl~~aK~av~~Ll~~~~~~~D~v~Li~F~~~~----a~~~lp~- 462 (589)
T TIGR02031 404 RKSGRLLIFVVDASGS------------AA----VARMSEAKGAVELLLGEAYVHRDQVSLIAFRGTA----AEVLLPP- 462 (589)
T ss_pred cccCceEEEEEECCCC------------CC----hHHHHHHHHHHHHHHHhhccCCCEEEEEEECCCC----ceEECCC-
Confidence 4455788999999996 32 24567777777776653 4333369999997641 0011221
Q ss_pred CCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcC---C---------
Q 007848 425 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVT---D--------- 492 (587)
Q Consensus 425 ~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~---d--------- 492 (587)
-.+.+.+ ++.+..+..+|.|.+++-|..+.+..++.. ....-.++++||||.-+ +
T Consensus 463 -------t~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~~~~~~--~~~~~~~ivllTDG~~nv~~~~~~~~~~~~ 529 (589)
T TIGR02031 463 -------SRSVEQA----KRRLDVLPGGGGTPLAAGLAAAFQTALQAR--SSGGTPTIVLITDGRGNIPLDGDPESIKAD 529 (589)
T ss_pred -------CCCHHHH----HHHHhcCCCCCCCcHHHHHHHHHHHHHHhc--ccCCceEEEEECCCCCCCCCCccccccccc
Confidence 1233332 456888889999999999999999887542 11233689999999753 1
Q ss_pred ---HHHH-HHHHHHccCCCeEEEEEecCCCCc--hhhhhcc
Q 007848 493 ---LQET-KDALVKASDLPLSILIIGVGGADF--KEMEILD 527 (587)
Q Consensus 493 ---~~~t-~~~i~~as~lPlSiiiVGvG~~~f--~~m~~ld 527 (587)
..+. ...........+.+++||+|.... ..+++|=
T Consensus 530 ~~~~~~~~~~~a~~~~~~gi~~~vid~~~~~~~~~~~~~lA 570 (589)
T TIGR02031 530 REQAAEEALALARKIREAGMPALVIDTAMRFVSTGFAQKLA 570 (589)
T ss_pred chhHHHHHHHHHHHHHhcCCeEEEEeCCCCCccchHHHHHH
Confidence 1121 222222235678999999997643 3466665
No 279
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.58 E-value=0.035 Score=62.70 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=99.2
Q ss_pred CcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEeCC
Q 007848 346 GGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLN 424 (587)
Q Consensus 346 ~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~-~yd~d~~~~~~gFG~~~~~~~~~~~f~l~ 424 (587)
+.....+++.||.|+| |. .+.-..|-.++..+|. .|-..-.+-++.|++... .-..|.+
T Consensus 398 ~~~~~~vvfvvD~SGS------------M~----~~rl~~aK~a~~~ll~~ay~~rD~v~lI~F~g~~a----~~~lppT 457 (584)
T PRK13406 398 QRSETTTIFVVDASGS------------AA----LHRLAEAKGAVELLLAEAYVRRDQVALVAFRGRGA----ELLLPPT 457 (584)
T ss_pred ccCCccEEEEEECCCC------------Cc----HhHHHHHHHHHHHHHHhhcCCCCEEEEEEECCCce----eEEcCCC
Confidence 3445889999999996 32 2455666666666663 466655799999965411 0112211
Q ss_pred CCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCC-----------H
Q 007848 425 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-----------L 493 (587)
Q Consensus 425 ~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-----------~ 493 (587)
..++.+ ++.+..+.-+|-|.+++-|..|.+.+++... ...-.++++||||.-+- .
T Consensus 458 --------~~~~~~----~~~L~~l~~gGgTpL~~gL~~A~~~l~~~~~--~~~~~~iVLlTDG~~n~~~~~~~~~~~~~ 523 (584)
T PRK13406 458 --------RSLVRA----KRSLAGLPGGGGTPLAAGLDAAAALALQVRR--KGMTPTVVLLTDGRANIARDGTAGRAQAE 523 (584)
T ss_pred --------cCHHHH----HHHHhcCCCCCCChHHHHHHHHHHHHHHhcc--CCCceEEEEEeCCCCCCCccccccccchh
Confidence 122322 4666788888999999999999998876532 22347999999998642 1
Q ss_pred HHHHHHHHHccCCCeEEEEEecCCCCchhhhhcc
Q 007848 494 QETKDALVKASDLPLSILIIGVGGADFKEMEILD 527 (587)
Q Consensus 494 ~~t~~~i~~as~lPlSiiiVGvG~~~f~~m~~ld 527 (587)
++...+...+....+.+++|+.|......|++|=
T Consensus 524 ~~~~~~a~~~~~~gi~~~vId~g~~~~~~~~~LA 557 (584)
T PRK13406 524 EDALAAARALRAAGLPALVIDTSPRPQPQARALA 557 (584)
T ss_pred hHHHHHHHHHHhcCCeEEEEecCCCCcHHHHHHH
Confidence 3444555555567788999999988777777776
No 280
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=96.51 E-value=0.045 Score=62.76 Aligned_cols=148 Identities=16% Similarity=0.162 Sum_probs=92.9
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcc-cccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQ-VYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~-~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
...+++.||.|+| |.. .+....|..++..++. .|-..-.+-+++|++. .....+|++
T Consensus 465 ~~~vv~vvD~SgS------------M~~---~~rl~~ak~a~~~ll~~a~~~~D~v~lI~F~g~----~a~~~~p~t--- 522 (633)
T TIGR02442 465 GNLVIFVVDASGS------------MAA---RGRMAAAKGAVLSLLRDAYQKRDKVALITFRGE----EAEVLLPPT--- 522 (633)
T ss_pred CceEEEEEECCcc------------CCC---ccHHHHHHHHHHHHHHHhhcCCCEEEEEEECCC----CceEEcCCC---
Confidence 4688999999996 331 2566677777766664 4555566999999764 111123332
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCC-------HHHHHHHH
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-------LQETKDAL 500 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-------~~~t~~~i 500 (587)
.+.+.+ .+.+..+...|.|.++.-|..+.+...+........-.++++||||.-+. .++...+-
T Consensus 523 -----~~~~~~----~~~L~~l~~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a 593 (633)
T TIGR02442 523 -----SSVELA----ARRLEELPTGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIA 593 (633)
T ss_pred -----CCHHHH----HHHHHhCCCCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHH
Confidence 222222 24566778899999999999999987753222334557899999998643 12232222
Q ss_pred HHccCCCeEEEEEecCCC--Cchhhhhcc
Q 007848 501 VKASDLPLSILIIGVGGA--DFKEMEILD 527 (587)
Q Consensus 501 ~~as~lPlSiiiVGvG~~--~f~~m~~ld 527 (587)
.......+-+++|+.+.. ++..++.|=
T Consensus 594 ~~l~~~~i~~~vIdt~~~~~~~~~~~~lA 622 (633)
T TIGR02442 594 AKLAARGILFVVIDTESGFVRLGLAEDLA 622 (633)
T ss_pred HHHHhcCCeEEEEeCCCCCcchhHHHHHH
Confidence 232345677888888765 345555554
No 281
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=96.42 E-value=0.0075 Score=54.26 Aligned_cols=109 Identities=26% Similarity=0.354 Sum_probs=73.2
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCc
Q 007848 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCE 431 (587)
Q Consensus 352 ~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p~ 431 (587)
+.||||-|+| ++ ..+..+++..+..+++.+ ...+.++=|-++...... |. .
T Consensus 1 i~vaiDtSGS------------is----~~~l~~fl~ev~~i~~~~--~~~v~vi~~D~~v~~~~~---~~--~------ 51 (126)
T PF09967_consen 1 IVVAIDTSGS------------IS----DEELRRFLSEVAGILRRF--PAEVHVIQFDAEVQDVQV---FR--S------ 51 (126)
T ss_pred CEEEEECCCC------------CC----HHHHHHHHHHHHHHHHhC--CCCEEEEEECCEeeeeeE---Ee--c------
Confidence 4799999997 54 257888999999999999 344888878765211111 11 0
Q ss_pred ccCHHHHHHHHHhhhcceee--cCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeE
Q 007848 432 VEGIPGIMMAYTSALHNVNL--AGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLS 509 (587)
Q Consensus 432 ~~g~~~i~~~Y~~~~~~v~~--~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlS 509 (587)
....+..+++ .|-|+|.|+++++.+. .....++++||||.....+. +-..|+=
T Consensus 52 ----------~~~~~~~~~~~GgGGTdf~pvf~~~~~~--------~~~~~~vi~fTDg~~~~~~~-------~P~~~vl 106 (126)
T PF09967_consen 52 ----------LEDELRDIKLKGGGGTDFRPVFEYLEEN--------RPRPSVVIYFTDGEGWPPEE-------APPYPVL 106 (126)
T ss_pred ----------ccccccccccCCCCCCcchHHHHHHHhc--------CCCCCEEEEEeCCCCCCCCC-------CCCCcEE
Confidence 1122333343 4789999999998643 24578899999998744322 2268888
Q ss_pred EEEEe
Q 007848 510 ILIIG 514 (587)
Q Consensus 510 iiiVG 514 (587)
|++.|
T Consensus 107 Wvl~~ 111 (126)
T PF09967_consen 107 WVLPG 111 (126)
T ss_pred EEEeC
Confidence 88888
No 282
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=96.42 E-value=0.054 Score=55.95 Aligned_cols=140 Identities=20% Similarity=0.167 Sum_probs=79.8
Q ss_pred cceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc-ccCCCCcceeeecccCCCCCceeEEeCCC
Q 007848 347 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV-YDSDKRFPAWGFGARPIDGPVSHCFNLNG 425 (587)
Q Consensus 347 g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~-yd~d~~~~~~gFG~~~~~~~~~~~f~l~~ 425 (587)
...+++++.+|.|+| |. +....|..++...+.. +.++-.+.++.|+..+. ..++++.
T Consensus 51 ~~p~~vvlvlD~SgS------------M~-----~~~~~a~~a~~~~l~~~l~~~d~v~lv~f~~~~~-----~~~~~t~ 108 (296)
T TIGR03436 51 DLPLTVGLVIDTSGS------------MR-----NDLDRARAAAIRFLKTVLRPNDRVFVVTFNTRLR-----LLQDFTS 108 (296)
T ss_pred CCCceEEEEEECCCC------------ch-----HHHHHHHHHHHHHHHhhCCCCCEEEEEEeCCcee-----EeecCCC
Confidence 346899999999996 32 2345566666666655 55666799999997621 1123322
Q ss_pred CCCCCcccCHHHHHHHHHhhhc-----------ceeecCCCChHHHHHHHHH-HHHhhhccCCCceEEEEEEeCCCcCCH
Q 007848 426 SNSYCEVEGIPGIMMAYTSALH-----------NVNLAGPTLFGPVISNAAL-IAGQSLANHGQKYFVLLIITDGVVTDL 493 (587)
Q Consensus 426 ~~~~p~~~g~~~i~~~Y~~~~~-----------~v~~~gpt~f~~ii~~~~~-~a~~~~~~~~~~y~vlliltdG~i~d~ 493 (587)
..+.+.++-.+.-. .+...|.|++..-|..++. ...+.. ...+.--++++||||.-++.
T Consensus 109 --------~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~g~T~l~~al~~aa~~~~~~~~-~~~p~rk~iIllTDG~~~~~ 179 (296)
T TIGR03436 109 --------DPRLLEAALNRLKPPLRTDYNSSGAFVRDGGGTALYDAITLAALEQLANAL-AGIPGRKALIVISDGGDNRS 179 (296)
T ss_pred --------CHHHHHHHHHhccCCCccccccccccccCCCcchhHHHHHHHHHHHHHHhh-cCCCCCeEEEEEecCCCcch
Confidence 13333333332211 1223788888777766543 322221 01011257999999976544
Q ss_pred HHHHHHHH-HccCCCeEEEEEecCC
Q 007848 494 QETKDALV-KASDLPLSILIIGVGG 517 (587)
Q Consensus 494 ~~t~~~i~-~as~lPlSiiiVGvG~ 517 (587)
....+.++ .+....+.|..||+|.
T Consensus 180 ~~~~~~~~~~~~~~~v~vy~I~~~~ 204 (296)
T TIGR03436 180 RDTLERAIDAAQRADVAIYSIDARG 204 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCc
Confidence 33333333 3345578888888874
No 283
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.0029 Score=65.36 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=83.7
Q ss_pred ccccccceeeeccccCCcCCCC-CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceeeceEEeeecCCCCCcEEEEEE
Q 007848 198 INSKTTTELILRCSDLDCKDLF-SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKSVFLNIQQVGSKDSPLIIECF 276 (587)
Q Consensus 198 ~~~~~l~v~vi~a~~L~~~d~~-g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wnef~~~~~~l~~~~~~L~i~V~ 276 (587)
...+.+.+.++.|++|..+-.. ..++|||+||+.. +|.-+.+.||+...+|+.|.+.. .+.+.+ ......|.+.||
T Consensus 266 d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~-~g~c~ak~ktk~A~kT~~plyqq-~l~f~~-sp~~k~Lq~tv~ 342 (405)
T KOG2060|consen 266 DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLE-NGFCIAKKKTKSARKTLDPLYQQ-QLSFDQ-SPPGKYLQGTVW 342 (405)
T ss_pred cccCceeEEEEecccccccCCcccccCceeEEEEcC-CCceecccccccccccCchhhhh-hhhhcc-CCCccEEEEEEe
Confidence 3456788999999999776532 3689999999987 56667788999999999887764 222221 234689999999
Q ss_pred -eccCCCCCceeEEEEEechhhhhcc-CCCceeEeeccc
Q 007848 277 -NFNSNGKHDLIGKVQKSLADLEKLH-SSGQGQNLFLST 313 (587)
Q Consensus 277 -D~d~~~~dd~IG~~~i~l~~l~~~~-~~~~~~~l~~~~ 313 (587)
|+.....+.|+|.+++-+.+|-... -...||.++-..
T Consensus 343 gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 343 GDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred ccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 7888777889999999999996422 223567766544
No 284
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=96.08 E-value=0.055 Score=52.00 Aligned_cols=156 Identities=12% Similarity=0.101 Sum_probs=81.4
Q ss_pred EEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCC
Q 007848 351 NFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYC 430 (587)
Q Consensus 351 ~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p 430 (587)
++++|+|.|+|=. .+...++++-.-..|...+.+.+..|...+...-.||++..+. .||.-- ..|
T Consensus 2 ~l~lavDlSgSM~--------~~~~~dg~~~~RL~a~k~v~~~f~~f~~~r~~DriG~~g~~~~----~~~lt~---d~p 66 (191)
T cd01455 2 RLKLVVDVSGSMY--------RFNGYDGRLDRSLEAVVMVMEAFDGFEDKIQYDIIGHSGDGPC----VPFVKT---NHP 66 (191)
T ss_pred ceEEEEECcHhHH--------HHhccCCccccHHHHHHHHHHHHHHHHHhCccceeeecCcccc----cCcccc---ccC
Confidence 5899999999622 1211223444445556666555655556666677888776221 122111 111
Q ss_pred cccCHH--HHHHHHHhhhcceeecCCCChHHHHHHHHHHHH-hhhccCCCceEEEEEEeCCCcCCHH-HHHH-HHHHccC
Q 007848 431 EVEGIP--GIMMAYTSALHNVNLAGPTLFGPVISNAALIAG-QSLANHGQKYFVLLIITDGVVTDLQ-ETKD-ALVKASD 505 (587)
Q Consensus 431 ~~~g~~--~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~-~~~~~~~~~y~vlliltdG~i~d~~-~t~~-~i~~as~ 505 (587)
.-...+ .++...-.-+ ++-+.|+..- .-|..+++.-+ ++ ...--|+++||||.-+.-. .-.+ +-.-|.+
T Consensus 67 ~t~d~~~~~~l~~~l~~~-q~g~ag~~Ta-dAi~~av~rl~~~~----~a~~kvvILLTDG~n~~~~i~P~~aAa~lA~~ 140 (191)
T cd01455 67 PKNNKERLETLKMMHAHS-QFCWSGDHTV-EATEFAIKELAAKE----DFDEAIVIVLSDANLERYGIQPKKLADALARE 140 (191)
T ss_pred cccchhHHHHHHHHHHhc-ccCccCccHH-HHHHHHHHHHHhcC----cCCCcEEEEEeCCCcCCCCCChHHHHHHHHHh
Confidence 112221 2222222211 3345676433 55666655543 32 2234599999999853222 2333 2333556
Q ss_pred CCeEEEEEecCCCCchhhhhcc
Q 007848 506 LPLSILIIGVGGADFKEMEILD 527 (587)
Q Consensus 506 lPlSiiiVGvG~~~f~~m~~ld 527 (587)
.-+=|-.||||..|.+.++.+-
T Consensus 141 ~gV~iytIgiG~~d~~~l~~iA 162 (191)
T cd01455 141 PNVNAFVIFIGSLSDEADQLQR 162 (191)
T ss_pred CCCEEEEEEecCCCHHHHHHHH
Confidence 7778888888887666555544
No 285
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.05 E-value=0.0095 Score=62.24 Aligned_cols=109 Identities=11% Similarity=0.055 Sum_probs=77.9
Q ss_pred cEEEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc-----------eeE
Q 007848 47 SQIELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV-----------VQT 114 (587)
Q Consensus 47 ~~ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~-----------~q~ 114 (587)
+.+||. ++|++++.....---|-||.+.+.-..+ .....+|.+|++|.+|.|.+.|.+++.... ...
T Consensus 367 ~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD-~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 367 QELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEND-SRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hHhHHHHhhcccCCCCCCchhHHhhhccccccccc-ccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 445554 6787776433222236788876532111 226899999999999999999988765411 136
Q ss_pred EEEEEEEcCCCccccccccccccccccccceeeecchhhccCCeeEEEEccc
Q 007848 115 LVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRKNRSLTLDLVR 166 (587)
Q Consensus 115 L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~~~~l~~~L~~ 166 (587)
++|+||+...++ .+|.++|.+.++|.-|.........++|.+
T Consensus 446 ~kfeifhkggf~----------rSdkl~gt~nikle~Len~cei~e~~~l~D 487 (523)
T KOG3837|consen 446 KKFEIFHKGGFN----------RSDKLTGTGNIKLEILENMCEICEYLPLKD 487 (523)
T ss_pred eeEEEeeccccc----------cccceeceeeeeehhhhcccchhhceeccc
Confidence 899999988763 688999999999999887666666778865
No 286
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=95.28 E-value=0.037 Score=49.30 Aligned_cols=94 Identities=13% Similarity=0.222 Sum_probs=63.8
Q ss_pred CcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec-------C--------ceeEEEEEEEEcCCCccccccc
Q 007848 68 DPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-------E--------VVQTLVFRIYDVDTQFHNVDVK 132 (587)
Q Consensus 68 DPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~-------e--------~~q~L~~~V~D~D~~~~~~~~~ 132 (587)
++||.+.+.--++. +..+|.++.++.-|.|+..++|.+.. | +...+.|+||+.+..+. .+..
T Consensus 34 N~yv~i~lSFl~~~--e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~-~~~~ 110 (143)
T cd08683 34 NSYVTIHLSFLPEK--ELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSA-GDTI 110 (143)
T ss_pred ceEEEEEeccCCCC--ceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccc-ccee
Confidence 58999885531222 68999999999999999999886541 1 12479999999876521 0000
Q ss_pred cccccccccccceeeecchhhccC-CeeEEEEc
Q 007848 133 TLKLVEQQFLGEATCTLSQIVTRK-NRSLTLDL 164 (587)
Q Consensus 133 ~~~l~~~d~LG~~~i~L~~l~~~~-~~~l~~~L 164 (587)
...-.+|-+||.+.+++.+|+... |-+-|+|+
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 001235668999999999987543 44567664
No 287
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=95.23 E-value=0.023 Score=59.51 Aligned_cols=120 Identities=21% Similarity=0.141 Sum_probs=81.8
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeee---cC------CCCCcE
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQ---VG------SKDSPL 271 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~---l~------~~~~~L 271 (587)
.+...+++|.+++....----|-|+++...-.+. .....||.+++.|..|.|++ |.+.+.. ++ -...-+
T Consensus 368 elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD-~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~ 446 (523)
T KOG3837|consen 368 ELELAIVRGQKNPVPGGPMHLDQFVRLEFPLEND-SRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGK 446 (523)
T ss_pred HhHHHHhhcccCCCCCCchhHHhhhccccccccc-ccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCe
Confidence 3445577888776543222347788886644331 12367999999999999998 8777654 10 014568
Q ss_pred EEEEEeccCC-CCCceeEEEEEechhhhhccCCCceeEeecccccCCCCcccccccEEE
Q 007848 272 IIECFNFNSN-GKHDLIGKVQKSLADLEKLHSSGQGQNLFLSTAAGNNNHKILNSQLFV 329 (587)
Q Consensus 272 ~i~V~D~d~~-~~dd~IG~~~i~l~~l~~~~~~~~~~~l~~~~k~~k~~~~~~~G~i~l 329 (587)
+|++|....+ .+|.++|.+.+.+.-|.........+++++-. |.+.|.|.+
T Consensus 447 kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGR-------K~vGGkLev 498 (523)
T KOG3837|consen 447 KFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGR-------KAVGGKLEV 498 (523)
T ss_pred eEEEeeccccccccceeceeeeeehhhhcccchhhceeccccc-------cccCCeeEE
Confidence 9999988766 67889999999999997655545555655432 234788877
No 288
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=94.84 E-value=0.095 Score=46.78 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=55.7
Q ss_pred CcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-----C--------CCCCcEEEEEEeccCC-------
Q 007848 223 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-----G--------SKDSPLIIECFNFNSN------- 281 (587)
Q Consensus 223 DPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-----~--------~~~~~L~i~V~D~d~~------- 281 (587)
++|+++.+..=++ ...++|+++.++..|.|+. ++|++..+ + -....+.++||..+..
T Consensus 34 N~yv~i~lSFl~~--~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~ 111 (143)
T cd08683 34 NSYVTIHLSFLPE--KELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSGEAISLAELLESAEIILEVWHRNPKSAGDTIK 111 (143)
T ss_pred ceEEEEEeccCCC--CceeeccchhhhcCCCccceEEEecccEEEcCCCccccHHHHhhcceEEeeeeecCCccccceec
Confidence 6899998643111 2478999999999999997 77777632 1 1256789999986642
Q ss_pred ---CCCceeEEEEEechhhhh
Q 007848 282 ---GKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 282 ---~~dd~IG~~~i~l~~l~~ 299 (587)
.+|-+||.+.+++.+|..
T Consensus 112 ~~~~~DilLG~v~IPl~~Ll~ 132 (143)
T cd08683 112 IETSGDILLGTVKIPLRDLLT 132 (143)
T ss_pred cCcCCcEEEEEEEeeHHHHhh
Confidence 245589999999999975
No 289
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=94.66 E-value=0.63 Score=54.65 Aligned_cols=152 Identities=16% Similarity=0.106 Sum_probs=90.0
Q ss_pred ccccCcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHH-hhhcccccCCCCcceeeecccCCCCCceeE
Q 007848 342 DYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEV-GEVLQVYDSDKRFPAWGFGARPIDGPVSHC 420 (587)
Q Consensus 342 dyi~~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i-~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~ 420 (587)
.+++..-.. ++++||-|+| |....+.+.-++|++.. ..++ .++-++-++.|+.... -.
T Consensus 298 s~lq~~~r~-VVLVLDvSGS------------M~g~dRL~~lkqAA~~fL~~~l---~~~DrVGLVtFsssA~-----vl 356 (863)
T TIGR00868 298 SLLKIRQRI-VCLVLDKSGS------------MTVEDRLKRMNQAAKLFLLQTV---EKGSWVGMVTFDSAAY-----IK 356 (863)
T ss_pred eecccCCce-EEEEEECCcc------------ccccCHHHHHHHHHHHHHHHhC---CCCCEEEEEEECCcee-----Ee
Confidence 344444443 8899999997 43211345555665543 2333 3445688999987610 11
Q ss_pred EeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHH
Q 007848 421 FNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDAL 500 (587)
Q Consensus 421 f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i 500 (587)
.+|.-- .. +...++-...++ ....|-|++..-|+.|.+..++... ...-..+++||||+-++..+..+.+
T Consensus 357 ~pLt~I------ts-~~dr~aL~~~L~-~~A~GGT~I~~GL~~Alq~L~~~~~--~~~~~~IILLTDGedn~~~~~l~~l 426 (863)
T TIGR00868 357 NELIQI------TS-SAERDALTANLP-TAASGGTSICSGLKAAFQVIKKSYQ--STDGSEIVLLTDGEDNTISSCFEEV 426 (863)
T ss_pred eccccC------Cc-HHHHHHHHHhhc-cccCCCCcHHHHHHHHHHHHHhccc--ccCCCEEEEEeCCCCCCHHHHHHHH
Confidence 222210 00 122333333443 3467899999999999988765421 1122478888999987766555554
Q ss_pred HHccCCCeEEEEEecCCCCchhhhhcc
Q 007848 501 VKASDLPLSILIIGVGGADFKEMEILD 527 (587)
Q Consensus 501 ~~as~lPlSiiiVGvG~~~f~~m~~ld 527 (587)
. ..++.|--||+|.+.=..|+.|-
T Consensus 427 k---~~gVtI~TIg~G~dad~~L~~IA 450 (863)
T TIGR00868 427 K---QSGAIIHTIALGPSAAKELEELS 450 (863)
T ss_pred H---HcCCEEEEEEeCCChHHHHHHHH
Confidence 3 35788888999987555566655
No 290
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=94.50 E-value=0.061 Score=44.67 Aligned_cols=87 Identities=14% Similarity=0.193 Sum_probs=60.5
Q ss_pred eeeeccccCCcCCCCCC-CCcEEEEEEEcCCCceeeEEecceecCCCCCceee-c--eEEeeecCCCCCcEEEEEEeccC
Q 007848 205 ELILRCSDLDCKDLFSR-NDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-V--FLNIQQVGSKDSPLIIECFNFNS 280 (587)
Q Consensus 205 v~vi~a~~L~~~d~~g~-sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f--~~~~~~l~~~~~~L~i~V~D~d~ 280 (587)
+.++.|+||.-....|. +.-|++--+.-. + -...||.+.....||.|+| | .+.+++|. +-.|.|.|+. .
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~--k-pv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~--~V~L~fsv~~--~ 75 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP--K-PVHFKSSAKEGSNDIEFMETFVFAIKLQNLQ--TVRLVFKIQT--Q 75 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecC--C-CccccchhhcCCCChhHHHHHHHHHHHhhcc--ceEEEEEeec--c
Confidence 45778888876554432 345666544321 1 2257899999999999999 4 44444443 5789999998 4
Q ss_pred CCCCceeEEEEEechhhh
Q 007848 281 NGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 281 ~~~dd~IG~~~i~l~~l~ 298 (587)
..+.+.||.|.++++++-
T Consensus 76 ~~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 76 TPRKRTIGECSLSLRTLS 93 (103)
T ss_pred CCccceeeEEEeecccCC
Confidence 567789999999999883
No 291
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=0.043 Score=57.00 Aligned_cols=105 Identities=16% Similarity=0.170 Sum_probs=77.0
Q ss_pred EEEE-EEEeCCCCCCC-CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEE-cCCC
Q 007848 49 IELS-FSAADLRDRDV-LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYD-VDTQ 125 (587)
Q Consensus 49 ieL~-v~arnL~~~D~-~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D-~D~~ 125 (587)
+++. ++|++|..+.- ...++|||+||+.. .|.-.-+.+|+...+|++|.+.+...|+-.. ....|.+.||- +...
T Consensus 271 l~vEii~ar~l~~k~~~k~~~apyVkVYlL~-~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp-~~k~Lq~tv~gdygRm 348 (405)
T KOG2060|consen 271 LEVEIIRARGLVVKPGSKSLPAPYVKVYLLE-NGFCIAKKKTKSARKTLDPLYQQQLSFDQSP-PGKYLQGTVWGDYGRM 348 (405)
T ss_pred eeEEEEecccccccCCcccccCceeEEEEcC-CCceecccccccccccCchhhhhhhhhccCC-CccEEEEEEecccccc
Confidence 4443 68999976553 34789999999997 4444568899999999999998877655332 22478888985 3333
Q ss_pred ccccccccccccccccccceeeecchhhccC-CeeEEEEccc
Q 007848 126 FHNVDVKTLKLVEQQFLGEATCTLSQIVTRK-NRSLTLDLVR 166 (587)
Q Consensus 126 ~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~-~~~l~~~L~~ 166 (587)
..+.|+|.+.+-+.+|--+. -..-|++|..
T Consensus 349 -----------d~k~fmg~aqi~l~eL~ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 349 -----------DHKSFMGVAQIMLDELNLSSSPVIGWYKLFG 379 (405)
T ss_pred -----------chHHHhhHHHHHhhhhccccccceeeeeccC
Confidence 45679999999999986544 4457998865
No 292
>PRK10997 yieM hypothetical protein; Provisional
Probab=94.32 E-value=0.69 Score=50.89 Aligned_cols=143 Identities=15% Similarity=0.140 Sum_probs=86.5
Q ss_pred ceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHH-HHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCC
Q 007848 348 FELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRA-ILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGS 426 (587)
Q Consensus 348 ~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~a-i~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~ 426 (587)
.+-.++|+||-|+| |. |..-.|..| ..+++.+...- ...+-++.|+... .++++.
T Consensus 322 ~kGpiII~VDtSGS------------M~--G~ke~~AkalAaAL~~iAl~q--~dr~~li~Fs~~i------~~~~l~-- 377 (487)
T PRK10997 322 PRGPFIVCVDTSGS------------MG--GFNEQCAKAFCLALMRIALAE--NRRCYIMLFSTEV------VTYELT-- 377 (487)
T ss_pred CCCcEEEEEECCCC------------CC--CCHHHHHHHHHHHHHHHHHhc--CCCEEEEEecCCc------eeeccC--
Confidence 34678999999996 33 123456555 34444444332 2337788898751 123332
Q ss_pred CCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCC-HHHHHHHHHHccC
Q 007848 427 NSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD-LQETKDALVKASD 505 (587)
Q Consensus 427 ~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d-~~~t~~~i~~as~ 505 (587)
.-.|+..+++.-.. .++|.|++++.++.+++..++. .-.=..++||||+.... .++..++|...-.
T Consensus 378 ----~~~gl~~ll~fL~~-----~f~GGTDl~~aL~~al~~l~~~----~~r~adIVVISDF~~~~~~eel~~~L~~Lk~ 444 (487)
T PRK10997 378 ----GPDGLEQAIRFLSQ-----SFRGGTDLAPCLRAIIEKMQGR----EWFDADAVVISDFIAQRLPDELVAKVKELQR 444 (487)
T ss_pred ----CccCHHHHHHHHHH-----hcCCCCcHHHHHHHHHHHHccc----ccCCceEEEECCCCCCCChHHHHHHHHHHHH
Confidence 23577777765532 3589999999999999887642 12346799999997644 3555555554432
Q ss_pred -CCeEEEEEecCC-CCchhhhhcc
Q 007848 506 -LPLSILIIGVGG-ADFKEMEILD 527 (587)
Q Consensus 506 -lPlSiiiVGvG~-~~f~~m~~ld 527 (587)
.-..+.-|-||+ ++=.-|+.+|
T Consensus 445 ~~~~rf~~l~i~~~~~p~l~~ifD 468 (487)
T PRK10997 445 QHQHRFHAVAMSAHGKPGIMRIFD 468 (487)
T ss_pred hcCcEEEEEEeCCCCCchHHHhcC
Confidence 444555555555 3334567666
No 293
>PF11775 CobT_C: Cobalamin biosynthesis protein CobT VWA domain
Probab=93.80 E-value=0.72 Score=45.11 Aligned_cols=148 Identities=16% Similarity=0.238 Sum_probs=76.8
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHH---HHHHhhhcccccCCCCcceeeecccCCCC-CceeEEeCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRA---ILEVGEVLQVYDSDKRFPAWGFGARPIDG-PVSHCFNLN 424 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~a---i~~i~~~~~~yd~d~~~~~~gFG~~~~~~-~~~~~f~l~ 424 (587)
..-+.+-||.|+| |. ..+-.-| .-.+.+.|+.-. =.+.++||--...++ ..-.-.-=.
T Consensus 12 d~~VtlLID~SGS------------Mr----gr~~~vA~~~adila~aL~~~g--vp~EVlGFtT~aw~gg~~~~~w~~~ 73 (219)
T PF11775_consen 12 DTVVTLLIDCSGS------------MR----GRPIEVAALCADILARALERCG--VPVEVLGFTTRAWKGGRSREAWLAA 73 (219)
T ss_pred CeEEEEEEeCCcC------------CC----CChHHHHHHHHHHHHHHHHhCC--CCeEEEeeecCCcCCcchHHHHHhc
Confidence 4568889999997 43 1233334 345777777754 336689996542222 110111112
Q ss_pred CCCCCCcccC-HHHHHHHHHhhhcceeecCCCChHHHHH----------HHHHHHHhhhccCCCceEEEEEEeCCCcCC-
Q 007848 425 GSNSYCEVEG-IPGIMMAYTSALHNVNLAGPTLFGPVIS----------NAALIAGQSLANHGQKYFVLLIITDGVVTD- 492 (587)
Q Consensus 425 ~~~~~p~~~g-~~~i~~~Y~~~~~~v~~~gpt~f~~ii~----------~~~~~a~~~~~~~~~~y~vlliltdG~i~d- 492 (587)
|.+..| | +.++.....+....-.--+..+++.+++ +|+..|.+...+....--||++|+||...|
T Consensus 74 G~p~~p---grln~l~h~vyk~a~~~wrraR~~l~~m~~~~~~~eniDGeAl~~a~~rL~~r~e~rkiLiViSDG~P~d~ 150 (219)
T PF11775_consen 74 GRPRYP---GRLNDLRHIVYKDADTPWRRARRNLGLMMREGLLKENIDGEALRWAAERLLARPEQRKILIVISDGAPADD 150 (219)
T ss_pred CCCCCC---hHHHHHHHHHHHhcCChhhhHHHhHHHHhhccccccCCcHHHHHHHHHHHHcCCccceEEEEEeCCCcCcc
Confidence 333233 3 3444433222211100012223444443 345555544444556666999999998874
Q ss_pred ----------HHHHHHHHHHcc--CCCeEEEEEecCC
Q 007848 493 ----------LQETKDALVKAS--DLPLSILIIGVGG 517 (587)
Q Consensus 493 ----------~~~t~~~i~~as--~lPlSiiiVGvG~ 517 (587)
++.-.+++++.- .-|+.++-||||.
T Consensus 151 st~~~n~~~~L~~HLr~vi~~ie~~~~Vel~aiGIg~ 187 (219)
T PF11775_consen 151 STLSANDGDYLDAHLRQVIAEIETRSDVELIAIGIGH 187 (219)
T ss_pred cccccCChHHHHHHHHHHHHHHhccCCcEEEEEEcCC
Confidence 233334444442 2488999999975
No 294
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.70 E-value=0.19 Score=47.15 Aligned_cols=76 Identities=17% Similarity=0.301 Sum_probs=53.3
Q ss_pred CCCCcEEEEEEEcCCCcee-eEEecceecCCCCCceee-ce--EEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEech
Q 007848 220 SRNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLA 295 (587)
Q Consensus 220 g~sDPyv~v~~~~~~g~~~-~~~kT~vik~tlnP~Wne-f~--~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~ 295 (587)
..+|-||.+.+.. +++.. ....|..+.-+..+.||| +. +.+..| ..+..|.|+|||++..++...||.+.++|-
T Consensus 28 ~~~~l~V~~~l~~-~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dL-P~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFD-DGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDL-PRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEE-CCEeccCcEEccccCCCCCcccceeEEcccchhcC-ChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 4578899987765 34322 133555555556788999 44 444544 347899999999987667789999999887
Q ss_pred hh
Q 007848 296 DL 297 (587)
Q Consensus 296 ~l 297 (587)
+-
T Consensus 106 d~ 107 (159)
T cd08397 106 NK 107 (159)
T ss_pred CC
Confidence 75
No 295
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=92.33 E-value=0.51 Score=49.61 Aligned_cols=101 Identities=18% Similarity=0.277 Sum_probs=70.6
Q ss_pred cceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee---ceEEeeec---CCCCCcEEEEEE
Q 007848 203 TTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQV---GSKDSPLIIECF 276 (587)
Q Consensus 203 l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne---f~~~~~~l---~~~~~~L~i~V~ 276 (587)
+++.+++|++++... ...-.+...+ ||. ...|+.+.-+-.|.|+. .+.....| .-.+.+|+++||
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~---ng~---~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF---NGE---SLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe---CCc---eeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 456688999998752 2233444555 332 67888888888999885 34333323 233789999999
Q ss_pred ecc-CCCCCceeEEEEEechhh---hhc--cCCCceeEeecc
Q 007848 277 NFN-SNGKHDLIGKVQKSLADL---EKL--HSSGQGQNLFLS 312 (587)
Q Consensus 277 D~d-~~~~dd~IG~~~i~l~~l---~~~--~~~~~~~~l~~~ 312 (587)
-.+ ..+..+.||.+.++|..+ ... .-..+||.|+.-
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 988 557779999999999998 432 233578888876
No 296
>PF05762 VWA_CoxE: VWA domain containing CoxE-like protein; InterPro: IPR008912 This group of proteins contains a VWA type domain and the function of this family is unknown. It is found as part of a CO oxidising (Cox) system operon in several bacteria [].
Probab=92.30 E-value=1.1 Score=44.39 Aligned_cols=118 Identities=15% Similarity=0.238 Sum_probs=69.1
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhh-hcccccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGE-VLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~-~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
...+++.+|.|+| |. .|...+..+.. +...+ ..+-+|-|+.... . +.+.+. .
T Consensus 57 ~~~lvvl~DvSGS------------M~------~~s~~~l~~~~~l~~~~---~~~~~f~F~~~l~-~-vT~~l~----~ 109 (222)
T PF05762_consen 57 PRRLVVLCDVSGS------------MA------GYSEFMLAFLYALQRQF---RRVRVFVFSTRLT-E-VTPLLR----R 109 (222)
T ss_pred CccEEEEEeCCCC------------hH------HHHHHHHHHHHHHHHhC---CCEEEEEEeeehh-h-hhhhhc----c
Confidence 3589999999997 43 23333333333 33332 2688999987621 1 111111 0
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCC-CcCCHHHHHHHHHHcc
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDG-VVTDLQETKDALVKAS 504 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG-~i~d~~~t~~~i~~as 504 (587)
. +..+.+....... ..++|-|+++..++++.+..... . -.-+++|||||| +-.+.++..+.+.+-.
T Consensus 110 ~-----~~~~~l~~~~~~~--~~~~GgTdi~~aL~~~~~~~~~~---~-~~~t~vvIiSDg~~~~~~~~~~~~l~~l~ 176 (222)
T PF05762_consen 110 R-----DPEEALARLSALV--QSFGGGTDIGQALREFLRQYARP---D-LRRTTVVIISDGWDTNDPEPLAEELRRLR 176 (222)
T ss_pred C-----CHHHHHHHHHhhc--cCCCCccHHHHHHHHHHHHhhcc---c-ccCcEEEEEecccccCChHHHHHHHHHHH
Confidence 1 2233333332222 23899999999999998876532 1 257899999999 5666666555554443
No 297
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=92.05 E-value=0.14 Score=42.60 Aligned_cols=84 Identities=14% Similarity=0.229 Sum_probs=57.1
Q ss_pred EEEeCCCCCCCCCCCCc--EEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCcee--EEEEEEEEcCCCccc
Q 007848 53 FSAADLRDRDVLSKSDP--MLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQ--TLVFRIYDVDTQFHN 128 (587)
Q Consensus 53 v~arnL~~~D~~gksDP--yv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q--~L~~~V~D~D~~~~~ 128 (587)
+.|+||.-....|. .| |++=-+.-..- -..||.+.....||.|.|+|.|.+.....+ .|.|.||. ..
T Consensus 6 ~~c~d~s~~~~~~e-~~~i~ikg~~tl~kp---v~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~--- 76 (103)
T cd08684 6 LKCKDLSWPSSCGE-NPTIYIKGILTLPKP---VHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QT--- 76 (103)
T ss_pred EEecccccccccCc-CCeeEEEEEEecCCC---ccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cC---
Confidence 67888865443332 24 33321211111 478999999999999999999876655444 67788887 22
Q ss_pred cccccccccccccccceeeecchhh
Q 007848 129 VDVKTLKLVEQQFLGEATCTLSQIV 153 (587)
Q Consensus 129 ~~~~~~~l~~~d~LG~~~i~L~~l~ 153 (587)
.+...||.|.+.|..+-
T Consensus 77 --------~RKe~iG~~sL~l~s~g 93 (103)
T cd08684 77 --------PRKRTIGECSLSLRTLS 93 (103)
T ss_pred --------CccceeeEEEeecccCC
Confidence 46789999999987764
No 298
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=91.58 E-value=0.81 Score=42.83 Aligned_cols=91 Identities=12% Similarity=0.187 Sum_probs=58.3
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCcee-eEEecceecCCCCCceee---ceEEeeecCCCCCcEEEEEEe
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFN 277 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~-~~~kT~vik~tlnP~Wne---f~~~~~~l~~~~~~L~i~V~D 277 (587)
.+.+.++++.++.-. ..+|-||++.+-. +++.. ....|..+.- .++.||| |.+.+..| ..+..|.|+||+
T Consensus 9 ~~~v~i~~~~~~~~~---~~~~l~V~v~l~~-g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dL-Pr~ArL~iti~~ 82 (158)
T cd08398 9 NLRIKILCATYVNVN---DIDKIYVRTGIYH-GGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDL-PRSARLCLSICS 82 (158)
T ss_pred CeEEEEEeeccCCCC---CcCeEEEEEEEEE-CCEEccCeeEecccCC-CCCccceeEEcccchhcC-ChhheEEEEEEE
Confidence 456677777777643 3468899987765 34322 1223433333 5799999 44444554 346789999999
Q ss_pred ccCCC----CCceeEEEEEechhhh
Q 007848 278 FNSNG----KHDLIGKVQKSLADLE 298 (587)
Q Consensus 278 ~d~~~----~dd~IG~~~i~l~~l~ 298 (587)
..... ....||.+.++|-+-.
T Consensus 83 ~~~~~~~k~~~~~iG~~ni~LFd~~ 107 (158)
T cd08398 83 VKGRKGAKEEHCPLAWGNINLFDYT 107 (158)
T ss_pred EecccCCCCceEEEEEEEEEEECCC
Confidence 87532 2347999999988753
No 299
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=90.75 E-value=0.81 Score=42.55 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=51.6
Q ss_pred CCCcEEEEEEEcCCCce-eeEEecceecCCCCCceee---ceEEeeecCCCCCcEEEEEEeccCCC--CCceeEEEEEec
Q 007848 221 RNDPFLVISKIVESGTH-IPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNG--KHDLIGKVQKSL 294 (587)
Q Consensus 221 ~sDPyv~v~~~~~~g~~-~~~~kT~vik~tlnP~Wne---f~~~~~~l~~~~~~L~i~V~D~d~~~--~dd~IG~~~i~l 294 (587)
..+-||.+.+.. +++. .....|.......++.||| |.+.+..| ..+..|.|+||+.+..+ ++..||.+.++|
T Consensus 27 ~~~l~V~~~l~~-g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~L-P~~arL~itl~~~~~~~~~~~~~iG~~~~~l 104 (156)
T cd08380 27 DLKLYVRVQLYH-GGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDL-PREARLCLSIYAVSEPGSKKEVPLGWVNVPL 104 (156)
T ss_pred ceeEEEEEEEEE-CCEEccCceeccCCcCCCCCcccceeEccchhhcC-ChhheEEEEEEEEecCCCCcceEEEEEeEEe
Confidence 456778776655 3432 2344555554446899999 33445554 34678999999988654 467999999999
Q ss_pred hhhh
Q 007848 295 ADLE 298 (587)
Q Consensus 295 ~~l~ 298 (587)
-+-.
T Consensus 105 Fd~~ 108 (156)
T cd08380 105 FDYK 108 (156)
T ss_pred Eccc
Confidence 8764
No 300
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=90.52 E-value=0.97 Score=42.95 Aligned_cols=93 Identities=13% Similarity=0.239 Sum_probs=59.1
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCcee-eEEecceecCCCCCceee---ceEEeeecCCCCCcEEEEEEe
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHI-PVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFN 277 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~-~~~kT~vik~tlnP~Wne---f~~~~~~l~~~~~~L~i~V~D 277 (587)
.+.+.++.+.+|...+ ...+-||++.+-. +++.. ....|..+.-+..+.|+| |.+.+..| +.+..|-|.||+
T Consensus 9 ~f~i~i~~~~~~~~~~--~~~~l~V~~~lyh-G~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dL-Pr~ArLciti~~ 84 (173)
T cd08693 9 KFSITLHKISNLNAAE--RTMKVGVQAGLFH-GGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDL-PRMARLCFAIYE 84 (173)
T ss_pred CEEEEEEEeccCccCC--CCceEEEEEEEEE-CCEEccCceEccccCCCCccccceeEEcccchhcC-ChhHeEEEEEEE
Confidence 4666777777776522 3466788876654 34322 133455555456799999 44555555 346789999999
Q ss_pred ccCCC----------------CCceeEEEEEechhhh
Q 007848 278 FNSNG----------------KHDLIGKVQKSLADLE 298 (587)
Q Consensus 278 ~d~~~----------------~dd~IG~~~i~l~~l~ 298 (587)
..... .+..||.+.++|-+-.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~ 121 (173)
T cd08693 85 VSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK 121 (173)
T ss_pred ecccccccccccccccccccCcceEEEEEeEEEEccc
Confidence 76432 2358888888877653
No 301
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=90.21 E-value=0.24 Score=56.57 Aligned_cols=88 Identities=19% Similarity=0.307 Sum_probs=64.0
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEec-CCCceeeEeeeeeecC-CCCCceee-eEEEE-eecCceeEEEEEEEEcC
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKA-RDGALVEVGRTEVVLN-SLNPTWIT-KHIIT-YQFEVVQTLVFRIYDVD 123 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~-~~~~~~~~~rTevi~~-tlNP~w~e-~f~~~-~~~e~~q~L~~~V~D~D 123 (587)
+++. |++.-|.+++. ..||.|.+-+ ..+......||+++.+ .+||+|++ .|.|. +-.++.-.|+|.||+..
T Consensus 705 ~sV~VISgqFLSdrkv----gtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavyeEg 780 (1189)
T KOG1265|consen 705 LSVTVISGQFLSDRKV----GTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYEEG 780 (1189)
T ss_pred EEEEEEeeeecccccc----CceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeeccC
Confidence 4444 67888877765 3899998755 2222336788888755 59999995 46664 55566678999999976
Q ss_pred CCccccccccccccccccccceeeecchhhcc
Q 007848 124 TQFHNVDVKTLKLVEQQFLGEATCTLSQIVTR 155 (587)
Q Consensus 124 ~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~ 155 (587)
+ .|||+-.+++..|..+
T Consensus 781 g---------------K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 781 G---------------KFIGQRILPVDGLNAG 797 (1189)
T ss_pred C---------------ceeeeeccchhcccCc
Confidence 4 4899999999888654
No 302
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=88.48 E-value=1.6 Score=39.84 Aligned_cols=73 Identities=19% Similarity=0.353 Sum_probs=49.3
Q ss_pred cEEEEEEEcCCCcee--eEEecceecCC-CCCceee---ceEEeeecCCCCCcEEEEEEeccCCCCC----ceeEEEEEe
Q 007848 224 PFLVISKIVESGTHI--PVCKTEVLKNE-TKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNGKH----DLIGKVQKS 293 (587)
Q Consensus 224 Pyv~v~~~~~~g~~~--~~~kT~vik~t-lnP~Wne---f~~~~~~l~~~~~~L~i~V~D~d~~~~d----d~IG~~~i~ 293 (587)
-||.+.+-. +++.. ++..|..+.-+ .++.|++ |.+.+..| ..+..|.|.||..+..... ..||.+.++
T Consensus 4 ~~V~~~ly~-g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~L-Pr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~ 81 (142)
T PF00792_consen 4 LYVECQLYH-GGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDL-PREARLCFTLYGVDSKKKSKKKKVPLGWVNLP 81 (142)
T ss_dssp EEEEEEEEE-TTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS--TTEEEEEEEEEEECSTTT--EEEEEEEEEEE
T ss_pred EEEEEEEEE-CCEEeecCeeeccccccccccceEeeEEEeecChHHC-ChhHeEEEEEEEecCCCccccceeEEEEEEEE
Confidence 466666654 34432 35577777666 8999998 44445555 3478999999998876655 699999999
Q ss_pred chhhh
Q 007848 294 LADLE 298 (587)
Q Consensus 294 l~~l~ 298 (587)
|-+..
T Consensus 82 lFd~~ 86 (142)
T PF00792_consen 82 LFDYR 86 (142)
T ss_dssp SB-TT
T ss_pred eECCC
Confidence 98874
No 303
>TIGR01651 CobT cobaltochelatase, CobT subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobT gene product, which is a cobalt chelatase subunit, with a MW ~70 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobS (TIGR01650) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobT gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=88.20 E-value=3.2 Score=46.40 Aligned_cols=158 Identities=19% Similarity=0.229 Sum_probs=89.5
Q ss_pred ccccCcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHH-HHHHHHhhhcccccCCCCcceeeecccCCCCCcee-
Q 007848 342 DYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQ-RAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSH- 419 (587)
Q Consensus 342 dyi~~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~-~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~- 419 (587)
+.-...-...|.+-||.|+| |. . ++-..- .+.-.+++.|+.-. =.+-+|||-....++..+.
T Consensus 385 e~~~~~~D~~V~LLID~SGS------------M~-~-r~~~vA~~~a~iLa~aL~~~g--Ip~eVlGFtt~aw~gg~~re 448 (600)
T TIGR01651 385 EEDTEFRDTVVTLLIDNSGS------------MR-G-RPITVAATCADILARTLERCG--VKVEILGFTTRAWKGGQSRE 448 (600)
T ss_pred cccCCCCCcEEEEEEECCcc------------CC-C-CHHHHHHHHHHHHHHHHHHCC--CCeEEEeecccccccccchH
Confidence 33334456789999999997 33 1 233332 24566777777543 3366899976533332211
Q ss_pred EEeCCCCCCCCcccC-HHHHHHHHHhhhcceeecCCCChHHHHH----------HHHHHHHhhhccCCCceEEEEEEeCC
Q 007848 420 CFNLNGSNSYCEVEG-IPGIMMAYTSALHNVNLAGPTLFGPVIS----------NAALIAGQSLANHGQKYFVLLIITDG 488 (587)
Q Consensus 420 ~f~l~~~~~~p~~~g-~~~i~~~Y~~~~~~v~~~gpt~f~~ii~----------~~~~~a~~~~~~~~~~y~vlliltdG 488 (587)
-+--.|.+..|--.+ +..++ |+.+-..+.= ...++.-+++ .|+.+|.+...+....=-||++|+||
T Consensus 449 ~w~~~g~p~~PgRlN~l~hii--yk~ad~~wr~-~r~~l~~mm~~~~~~eN~DGeAl~wa~~rL~~R~e~rKiL~ViSDG 525 (600)
T TIGR01651 449 KWLKAGKPAAPGRLNDLRHII--YKSADAPWRR-ARRNLGLMMREGLLKENIDGEALMWAHQRLIARPEQRRILMMISDG 525 (600)
T ss_pred HHHhcCCCCCCcccchhhhhh--hhccccchhh-hccchhhhhhccccccCCchHHHHHHHHHHhcCcccceEEEEEeCC
Confidence 222234444442222 44444 6655332221 1223434442 56667766555567778899999999
Q ss_pred CcCCH-----------HH-HHHHHHHccCC-CeEEEEEecCCC
Q 007848 489 VVTDL-----------QE-TKDALVKASDL-PLSILIIGVGGA 518 (587)
Q Consensus 489 ~i~d~-----------~~-t~~~i~~as~l-PlSiiiVGvG~~ 518 (587)
...|- ++ ..+.|.+...- |+-++-||||..
T Consensus 526 ~P~D~~TlsvN~~~~l~~hLr~vi~~~e~~~~vel~aigIg~D 568 (600)
T TIGR01651 526 APVDDSTLSVNPGNYLERHLRAVIEEIETRSPVELLAIGIGHD 568 (600)
T ss_pred CcCCccccccCchhHHHHHHHHHHHHHhccCCceEEEeecccc
Confidence 98752 22 33444444453 899999999876
No 304
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=87.58 E-value=3.3 Score=38.51 Aligned_cols=108 Identities=14% Similarity=0.172 Sum_probs=75.2
Q ss_pred CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc-------------eeEEEEEEEEcCCCcccccc
Q 007848 65 SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV-------------VQTLVFRIYDVDTQFHNVDV 131 (587)
Q Consensus 65 gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~-------------~q~L~~~V~D~D~~~~~~~~ 131 (587)
+..+....+++.= .+ +.++|+.++-+.+|.|++.|.|+..-+. .+++.+.|.-.|..
T Consensus 30 ~~~~s~~~l~l~f-~~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~------ 99 (156)
T PF15627_consen 30 GQVCSTFTLHLHF-RG---QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPS------ 99 (156)
T ss_pred CCCceEEEEEEEe-cC---ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCC------
Confidence 4455556665543 22 5999999999999999999988765432 35888888887764
Q ss_pred ccccccccccccceeeecchhhccCCee--EEEEccccccccccccccCCCCCCCCcccEEEeecceecc
Q 007848 132 KTLKLVEQQFLGEATCTLSQIVTRKNRS--LTLDLVRREETITPITEESNPSNRPKHCGKLTVHAEECIN 199 (587)
Q Consensus 132 ~~~~l~~~d~LG~~~i~L~~l~~~~~~~--l~~~L~~~~~~~~~~~~~~~~~~~~~~~G~I~l~~~~~~~ 199 (587)
+...++|.-.++...++.++... ...+|... ... ..-..|.|.+++|-.+.
T Consensus 100 -----~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~----------~~e--~kv~~GiL~l~lELlP~ 152 (156)
T PF15627_consen 100 -----GETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV----------GPE--SKVPVGILDLRLELLPN 152 (156)
T ss_pred -----CceEeeeeceehHHHHhccCCCccceeEEEecc----------CCC--CccceeEEEEEEEeecC
Confidence 55689999999999999887763 34444330 000 11357889988876554
No 305
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=87.15 E-value=7.4 Score=37.20 Aligned_cols=63 Identities=19% Similarity=0.226 Sum_probs=35.7
Q ss_pred ceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCCCccccccccccccccccccceeeecch
Q 007848 81 ALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 81 ~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~ 151 (587)
.......|.|...+.+|.|++.|.+....+. ..+|.|.+|+.....+ -.+...+|.+-++|-+
T Consensus 56 ~~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~--------~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 56 SFVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKES--------KEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSS--------S-SS-EEEEEEEESB-
T ss_pred CcceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccc--------cCccceeEEEEEEeee
Confidence 3456788889999999999999988876543 4699999999875410 0112678888888766
No 306
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=86.86 E-value=0.74 Score=52.84 Aligned_cols=90 Identities=11% Similarity=0.163 Sum_probs=63.6
Q ss_pred cccceeeeccccCCcCCCCCCCCcEEEEEEEc-CCCceeeEEecceecC-CCCCceee--ceEEeeecCCCCCcEEEEEE
Q 007848 201 KTTTELILRCSDLDCKDLFSRNDPFLVISKIV-ESGTHIPVCKTEVLKN-ETKPTWKS--VFLNIQQVGSKDSPLIIECF 276 (587)
Q Consensus 201 ~~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~-~~g~~~~~~kT~vik~-tlnP~Wne--f~~~~~~l~~~~~~L~i~V~ 276 (587)
+.+.|.|++|.=|..++.. .||.|-+-+ ........+||+++.. .+||+|++ |.|.--.| +.-..|.|.||
T Consensus 703 ~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvL-peLA~lRiavy 777 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVL-PELASLRIAVY 777 (1189)
T ss_pred eeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecc-cchhheeeeee
Confidence 4566788898888765543 799998754 1122235788988875 49999998 55444333 22468999999
Q ss_pred eccCCCCCceeEEEEEechhhhh
Q 007848 277 NFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 277 D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
+... .+||+=.+++..|..
T Consensus 778 eEgg----K~ig~RIlpvd~l~~ 796 (1189)
T KOG1265|consen 778 EEGG----KFIGQRILPVDGLNA 796 (1189)
T ss_pred ccCC----ceeeeeccchhcccC
Confidence 8543 699999999999953
No 307
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=86.41 E-value=2.7 Score=40.12 Aligned_cols=73 Identities=16% Similarity=0.165 Sum_probs=44.6
Q ss_pred CcEEEEEEEcCCCceeeEEecceecCCCCCceee---ceEEeeecCCCCCcEEEEEEeccCCC----------------C
Q 007848 223 DPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSNG----------------K 283 (587)
Q Consensus 223 DPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne---f~~~~~~l~~~~~~L~i~V~D~d~~~----------------~ 283 (587)
.-||++.+-. ++......+|....-+.+|.||| |.+.+..| .....|.|.||++.... .
T Consensus 31 ~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dL-P~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~ 108 (178)
T cd08399 31 TVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDL-PKGALLNLQIYCGKAPALSSKKSAESPSSESKGK 108 (178)
T ss_pred EEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccC-ChhhEEEEEEEEEecCcccccccccccccccccc
Confidence 3667765544 23222223555555567899999 44555555 34678999999974321 2
Q ss_pred CceeEEEEEechhh
Q 007848 284 HDLIGKVQKSLADL 297 (587)
Q Consensus 284 dd~IG~~~i~l~~l 297 (587)
+..||.+.+.|-+-
T Consensus 109 ~~~l~wvn~~LFD~ 122 (178)
T cd08399 109 HQLLYYVNLLLIDH 122 (178)
T ss_pred cceEEEEEEEEEcC
Confidence 45677777777664
No 308
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=85.92 E-value=2 Score=40.29 Aligned_cols=75 Identities=17% Similarity=0.161 Sum_probs=52.6
Q ss_pred CCCCcEEEEEEecCCCc-eeeEeeeeeecCCCCCceeeeEEEEeec---CceeEEEEEEEEcCCCccccccccccccccc
Q 007848 65 SKSDPMLVVYMKARDGA-LVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQ 140 (587)
Q Consensus 65 gksDPyv~v~~~~~~~~-~~~~~rTevi~~tlNP~w~e~f~~~~~~---e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d 140 (587)
..+|-||.+.+-.+ ++ .....+|..+.-+..+.|+|.+.|.+.. +..-.|.|.|||.+.. ++..
T Consensus 28 ~~~~l~V~~~l~~~-~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~-----------~~~~ 95 (159)
T cd08397 28 PNSDLFVTCQVFDD-GKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGT-----------GKAV 95 (159)
T ss_pred CCCCEEEEEEEEEC-CEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCC-----------CCce
Confidence 45778888876542 22 1224467777767789999998887543 3345899999998754 4567
Q ss_pred cccceeeecch
Q 007848 141 FLGEATCTLSQ 151 (587)
Q Consensus 141 ~LG~~~i~L~~ 151 (587)
.+|.+.++|-+
T Consensus 96 ~vg~~~~~lFd 106 (159)
T cd08397 96 PFGGTTLSLFN 106 (159)
T ss_pred EEEEEEEeeEC
Confidence 89999888754
No 309
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=83.94 E-value=2.5 Score=40.00 Aligned_cols=95 Identities=17% Similarity=0.191 Sum_probs=60.9
Q ss_pred ccceeeeccccCCcCCCCCCCCcEEEEEEEcCCCceee-EEecceec--C--CCCCceee---ceEEeeecCCCCCcEEE
Q 007848 202 TTTELILRCSDLDCKDLFSRNDPFLVISKIVESGTHIP-VCKTEVLK--N--ETKPTWKS---VFLNIQQVGSKDSPLII 273 (587)
Q Consensus 202 ~l~v~vi~a~~L~~~d~~g~sDPyv~v~~~~~~g~~~~-~~kT~vik--~--tlnP~Wne---f~~~~~~l~~~~~~L~i 273 (587)
.+.+.+.++.+++.......+|-|+.+.+.. +++... ...|+... + ...+.||| |.+.+..| ..+..|.|
T Consensus 9 ~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~-g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~L-PrearL~i 86 (171)
T cd04012 9 LLSVTVSSLHRIPPTWVQSFEDFYLSCSLYH-GGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQL-PRESRLVL 86 (171)
T ss_pred cEEEEEEEeecCChHHhhccccEEEEEEEEE-CCEECcCceeccccccccCccccccccceEECccchhcC-ChhHEEEE
Confidence 3555667777777655444578888887765 343221 22343221 1 13567998 44555555 45789999
Q ss_pred EEEeccCCC---------CCceeEEEEEechhhh
Q 007848 274 ECFNFNSNG---------KHDLIGKVQKSLADLE 298 (587)
Q Consensus 274 ~V~D~d~~~---------~dd~IG~~~i~l~~l~ 298 (587)
.+|+....+ .+..||.+.++|-+-.
T Consensus 87 tl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~ 120 (171)
T cd04012 87 TLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFR 120 (171)
T ss_pred EEEEEecCCccccccccccceEEEEEeEeeEcch
Confidence 999987654 4579999999988764
No 310
>COG1240 ChlD Mg-chelatase subunit ChlD [Coenzyme metabolism]
Probab=83.93 E-value=6.3 Score=39.58 Aligned_cols=139 Identities=17% Similarity=0.191 Sum_probs=90.9
Q ss_pred EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhc-ccccCCCCcceeeecccCCCCCceeEEeCCCCCC
Q 007848 350 LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVL-QVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNS 428 (587)
Q Consensus 350 ~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~-~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~ 428 (587)
.-+++++|-|+| |.-. .--+.|=-++...| ..|-.--++.+.+|=+. ...-..|-+-
T Consensus 79 ~lvvfvVDASgS------------M~~~---~Rm~aaKG~~~~lL~dAYq~RdkvavI~F~G~----~A~lll~pT~--- 136 (261)
T COG1240 79 NLIVFVVDASGS------------MAAR---RRMAAAKGAALSLLRDAYQRRDKVAVIAFRGE----KAELLLPPTS--- 136 (261)
T ss_pred CcEEEEEeCccc------------chhH---HHHHHHHHHHHHHHHHHHHccceEEEEEecCC----cceEEeCCcc---
Confidence 456789999996 4311 12233333333333 34555556889999654 1100111110
Q ss_pred CCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCC------HHHHHHHHHH
Q 007848 429 YCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTD------LQETKDALVK 502 (587)
Q Consensus 429 ~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d------~~~t~~~i~~ 502 (587)
. ++.-.+.|..+..+|-|-+++-|..+.+...+...++...-.++++||||..++ ..|+..+-..
T Consensus 137 -----s----v~~~~~~L~~l~~GG~TPL~~aL~~a~ev~~r~~r~~p~~~~~~vviTDGr~n~~~~~~~~~e~~~~a~~ 207 (261)
T COG1240 137 -----S----VELAERALERLPTGGKTPLADALRQAYEVLAREKRRGPDRRPVMVVITDGRANVPIPLGPKAETLEAASK 207 (261)
T ss_pred -----c----HHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHhhccCCCcceEEEEEeCCccCCCCCCchHHHHHHHHHH
Confidence 1 344466788889999999999999999998887655667889999999997533 3567777777
Q ss_pred ccCCCeEEEEEecCCCC
Q 007848 503 ASDLPLSILIIGVGGAD 519 (587)
Q Consensus 503 as~lPlSiiiVGvG~~~ 519 (587)
....++-+++|......
T Consensus 208 ~~~~g~~~lvid~e~~~ 224 (261)
T COG1240 208 LRLRGIQLLVIDTEGSE 224 (261)
T ss_pred HhhcCCcEEEEecCCcc
Confidence 77788878888876655
No 311
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=82.73 E-value=10 Score=36.48 Aligned_cols=71 Identities=14% Similarity=0.190 Sum_probs=47.6
Q ss_pred cEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCC
Q 007848 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~ 124 (587)
..||++++.++=...++ |-|. +... .....-..+|-|...+.+|.|+|++.+.+..+. .-+|+|.+++.-.
T Consensus 23 rNIeV~v~v~~~~G~~~-----~~cI-~~~~-g~~~~se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~ 95 (189)
T cd08695 23 KNIEVTMVVLDADGQVL-----KDCI-SLGS-GEPPCSEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCST 95 (189)
T ss_pred ceEEEEEEEEcCCCCCc-----cCCE-EcCC-CCCccceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeee
Confidence 67888888875433222 2222 2222 112234679999999999999999998876653 3489999988654
No 312
>COG2425 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=82.58 E-value=8.2 Score=41.96 Aligned_cols=129 Identities=18% Similarity=0.153 Sum_probs=75.7
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHH-HHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAI-LEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSN 427 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai-~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~ 427 (587)
.=-+++.+|-|+| |... +-+..+|+ .++.++...= ++.+-+.-|-.. .|.+ .
T Consensus 272 ~GpvilllD~SGS------------M~G~--~e~~AKAvalAl~~~alae--nR~~~~~lF~s~--------~~~~---e 324 (437)
T COG2425 272 EGPVILLLDKSGS------------MSGF--KEQWAKAVALALMRIALAE--NRDCYVILFDSE--------VIEY---E 324 (437)
T ss_pred CCCEEEEEeCCCC------------cCCc--HHHHHHHHHHHHHHHHHHh--ccceEEEEeccc--------ceee---e
Confidence 3568899999995 4322 22223322 2333443332 344767777552 1111 1
Q ss_pred CCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCc---CCHHHHHHHHHHcc
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV---TDLQETKDALVKAS 504 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i---~d~~~t~~~i~~as 504 (587)
-.+...|++++++- +..+--+| |+|+..|..|++.+++.. -.+ .=+++||||.- +|.-..++.+.+++
T Consensus 325 l~~k~~~~~e~i~f----L~~~f~GG-TD~~~~l~~al~~~k~~~---~~~-adiv~ITDg~~~~~~~~~~~v~e~~k~~ 395 (437)
T COG2425 325 LYEKKIDIEELIEF----LSYVFGGG-TDITKALRSALEDLKSRE---LFK-ADIVVITDGEDERLDDFLRKVKELKKRR 395 (437)
T ss_pred ecCCccCHHHHHHH----HhhhcCCC-CChHHHHHHHHHHhhccc---ccC-CCEEEEeccHhhhhhHHHHHHHHHHHHh
Confidence 24566788888873 33333345 999999999999998642 223 56789999964 24456666666666
Q ss_pred CCCeEEEEE
Q 007848 505 DLPLSILII 513 (587)
Q Consensus 505 ~lPlSiiiV 513 (587)
+.=+=-|+|
T Consensus 396 ~~rl~aV~I 404 (437)
T COG2425 396 NARLHAVLI 404 (437)
T ss_pred hceEEEEEe
Confidence 544433333
No 313
>COG4548 NorD Nitric oxide reductase activation protein [Inorganic ion transport and metabolism]
Probab=80.83 E-value=6.2 Score=43.36 Aligned_cols=156 Identities=17% Similarity=0.198 Sum_probs=99.6
Q ss_pred ceEEEEEEeccccCCCCCCCCCCcc-ccCCCCC-CCHHHHHHHHHhhhcccccCCCCcceeeecccC-CCCCceeEEeCC
Q 007848 348 FELNFMVAVDFTASNGNPRLPDSLH-YLDPSGR-PNAYQRAILEVGEVLQVYDSDKRFPAWGFGARP-IDGPVSHCFNLN 424 (587)
Q Consensus 348 ~~~~~~~aiDft~sN~~~~~~~slh-~~~~~~~-~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~-~~~~~~~~f~l~ 424 (587)
..+-|.+-||.|+ |.| +++.+.+ .--..+|+..++.-++--.+- ..+|+|-.+. +-...+..-+
T Consensus 445 ~Dla~TLLvD~S~---------St~a~mdetrRvidl~~eaL~~la~~~qa~gd~--~~~~~fts~rr~~vri~tvk~-- 511 (637)
T COG4548 445 HDLAFTLLVDVSA---------STDAKMDETRRVIDLFHEALLVLAHGHQALGDS--EDILDFTSRRRPWVRINTVKD-- 511 (637)
T ss_pred ccceeEEEeeccc---------chHHHhhhhhhhHHHHHHHHHHhhchhhhhCCH--HHhcCchhhcCcceeeeeeec--
Confidence 4578999999999 455 5654311 356778888877766654332 4456676541 1111100000
Q ss_pred CCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHH---------H
Q 007848 425 GSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQ---------E 495 (587)
Q Consensus 425 ~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~---------~ 495 (587)
++ .+ .-+.-...+..+++.--|-....|++|++.--. .++.=-.|++||||..+|.+ .
T Consensus 512 FD--es-------~~~~~~~RImALePg~ytR~G~AIR~As~kL~~----rpq~qklLivlSDGkPnd~d~YEgr~gIeD 578 (637)
T COG4548 512 FD--ES-------MGETVGPRIMALEPGYYTRDGAAIRHASAKLME----RPQRQKLLIVLSDGKPNDFDHYEGRFGIED 578 (637)
T ss_pred cc--cc-------cccccchhheecCccccccccHHHHHHHHHHhc----CcccceEEEEecCCCcccccccccccchhh
Confidence 00 00 001112234456677778888999998765432 34666789999999988775 6
Q ss_pred HHHHHHHccCCCeEEEEEecCCCCchhhhhcccC
Q 007848 496 TKDALVKASDLPLSILIIGVGGADFKEMEILDAD 529 (587)
Q Consensus 496 t~~~i~~as~lPlSiiiVGvG~~~f~~m~~ld~d 529 (587)
|.+|+.+|-+-.++++-|-|..+.-+.+-.+-+-
T Consensus 579 Tr~AV~eaRk~Gi~VF~Vtld~ea~~y~p~~fgq 612 (637)
T COG4548 579 TREAVIEARKSGIEVFNVTLDREAISYLPALFGQ 612 (637)
T ss_pred HHHHHHHHHhcCceEEEEEecchhhhhhHHHhcc
Confidence 9999999999999999999988776666555543
No 314
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=79.77 E-value=31 Score=32.16 Aligned_cols=103 Identities=10% Similarity=0.099 Sum_probs=70.4
Q ss_pred CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeec-----------CCCCCcEEEEEEeccCCCCCcee
Q 007848 220 SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQV-----------GSKDSPLIIECFNFNSNGKHDLI 287 (587)
Q Consensus 220 g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l-----------~~~~~~L~i~V~D~d~~~~dd~I 287 (587)
+..+..+.+++.-. + ..++|..+.-+.+|.|++ |.|.++.- -....+|.+-|.-.|..+...++
T Consensus 30 ~~~~s~~~l~l~f~-~---QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv 105 (156)
T PF15627_consen 30 GQVCSTFTLHLHFR-G---QRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLV 105 (156)
T ss_pred CCCceEEEEEEEec-C---ceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEee
Confidence 55667777777442 2 389999999999999998 65555421 12367889999988888777999
Q ss_pred EEEEEechhhhhccCC--CceeEeecccccCCCCcccccccEEEe
Q 007848 288 GKVQKSLADLEKLHSS--GQGQNLFLSTAAGNNNHKILNSQLFVD 330 (587)
Q Consensus 288 G~~~i~l~~l~~~~~~--~~~~~l~~~~k~~k~~~~~~~G~i~l~ 330 (587)
|+-.+....+...... ....++.-.....| ...|.|.|+
T Consensus 106 ~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~k----v~~GiL~l~ 146 (156)
T PF15627_consen 106 GSHFLDWRKVLCSGNGSTSFTVELCGVGPESK----VPVGILDLR 146 (156)
T ss_pred eeceehHHHHhccCCCccceeEEEeccCCCCc----cceeEEEEE
Confidence 9999999999753322 23444544332222 228888883
No 315
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=79.50 E-value=16 Score=35.38 Aligned_cols=71 Identities=15% Similarity=0.231 Sum_probs=49.0
Q ss_pred cEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCC
Q 007848 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~ 124 (587)
..||++++.++= .|..=| +.+.... .....-..+|-|...+.+|.|+|++.+.+..+. .-+|+|.+++...
T Consensus 23 rNIeVtv~vr~~-----~G~~i~-~~i~~gs-g~~~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~ 95 (196)
T cd08694 23 KNVEVTVSVCNE-----DGKIIP-GVISLGA-GEEPIDEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSS 95 (196)
T ss_pred ceEEEEEEEECC-----CCCCCc-eeEEcCC-CCCcceeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeecc
Confidence 679999988772 122222 2222222 223456889999999999999999988876553 3589999998754
No 316
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=78.99 E-value=48 Score=29.78 Aligned_cols=70 Identities=17% Similarity=0.340 Sum_probs=45.7
Q ss_pred eeeeee-cCCCCCceeeeEEEEeec---C-----ceeEEEEEEEEcCCCccccccccccccccccccceeeecchhhccC
Q 007848 86 GRTEVV-LNSLNPTWITKHIITYQF---E-----VVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (587)
Q Consensus 86 ~rTevi-~~tlNP~w~e~f~~~~~~---e-----~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~ 156 (587)
++|+.. ..+-.-.|++.|.+.+.+ . ..-.++|.|+..... ++...+|.+.++|++.....
T Consensus 40 ~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~-----------~~k~~lG~~~inLaey~~~~ 108 (143)
T PF10358_consen 40 GTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGS-----------GKKKVLGKVSINLAEYANED 108 (143)
T ss_pred eeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCC-----------CccceEEEEEEEHHHhhCcC
Confidence 445443 333457899999876432 1 123789999987532 22369999999999998753
Q ss_pred --CeeEEEEccc
Q 007848 157 --NRSLTLDLVR 166 (587)
Q Consensus 157 --~~~l~~~L~~ 166 (587)
.....++|..
T Consensus 109 ~~~~~~~~~l~~ 120 (143)
T PF10358_consen 109 EEPITVRLLLKK 120 (143)
T ss_pred CCcEEEEEeCcc
Confidence 4446666654
No 317
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=78.47 E-value=12 Score=35.88 Aligned_cols=73 Identities=18% Similarity=0.359 Sum_probs=50.6
Q ss_pred cEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC--ceeEEEEEEEEcCC
Q 007848 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e--~~q~L~~~V~D~D~ 124 (587)
..|+++|+-++-... ...|.-.++.+. .+.+.....|.|...+.+|.|.+.+.+....+ ...+|.|.+|+...
T Consensus 24 RNI~V~V~lrd~D~~----~~~~l~~I~~g~-g~~~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc 98 (185)
T cd08697 24 RNIAVCIEFRDSDEE----DAKPLKCIYYGP-GGGFTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSC 98 (185)
T ss_pred ccEEEEEEEEeCCCC----cCccceEEecCC-CCCcceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeecc
Confidence 567777776653321 123444454443 22267899999999999999999998775543 45699999999874
No 318
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=78.21 E-value=6.1 Score=36.61 Aligned_cols=76 Identities=20% Similarity=0.131 Sum_probs=47.6
Q ss_pred CCCcEEEEEEecCCCc-eeeEeeeeeecCCCCCceeeeEEEEeec---CceeEEEEEEEEcCCCcccccccccccccccc
Q 007848 66 KSDPMLVVYMKARDGA-LVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQF 141 (587)
Q Consensus 66 ksDPyv~v~~~~~~~~-~~~~~rTevi~~tlNP~w~e~f~~~~~~---e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~ 141 (587)
.++-||.+.+-.+ ++ ......|.......++.|+|.+.|++.. +..-.|.|.||+.+.. .-.++..
T Consensus 27 ~~~l~V~~~l~~g-~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~---------~~~~~~~ 96 (156)
T cd08380 27 DLKLYVRVQLYHG-GEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVSEP---------GSKKEVP 96 (156)
T ss_pred ceeEEEEEEEEEC-CEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEecC---------CCCcceE
Confidence 3556677655441 22 1233445444444789999999887443 3345899999998753 0014578
Q ss_pred ccceeeecch
Q 007848 142 LGEATCTLSQ 151 (587)
Q Consensus 142 LG~~~i~L~~ 151 (587)
||.+.++|-+
T Consensus 97 iG~~~~~lFd 106 (156)
T cd08380 97 LGWVNVPLFD 106 (156)
T ss_pred EEEEeEEeEc
Confidence 9998888755
No 319
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=77.57 E-value=16 Score=34.83 Aligned_cols=74 Identities=15% Similarity=0.257 Sum_probs=48.8
Q ss_pred cEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC--ceeEEEEEEEEcCC
Q 007848 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVDT 124 (587)
Q Consensus 47 ~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e--~~q~L~~~V~D~D~ 124 (587)
..|+++|+-++= |- ...+.-.++.............|.|...+.+|.|.+.+.+....+ ...+|.|++|+.+.
T Consensus 22 rNI~V~v~l~~~---d~--~~~~l~~i~~g~~~~~~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~ 96 (179)
T cd08696 22 RNIAVKVQLMSG---ED--ESQALPVIFKGSSPEEFLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISC 96 (179)
T ss_pred CCEEEEEEEEeC---CC--CCccceEEEeCCCCCccceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeec
Confidence 457777665542 11 123333332222111356789999999999999999998876654 44699999999875
Q ss_pred C
Q 007848 125 Q 125 (587)
Q Consensus 125 ~ 125 (587)
.
T Consensus 97 ~ 97 (179)
T cd08696 97 Q 97 (179)
T ss_pred c
Confidence 3
No 320
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=74.74 E-value=20 Score=34.25 Aligned_cols=60 Identities=10% Similarity=0.195 Sum_probs=33.8
Q ss_pred eeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCC---ceeEEEEEechh
Q 007848 237 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKH---DLIGKVQKSLAD 296 (587)
Q Consensus 237 ~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~d---d~IG~~~i~l~~ 296 (587)
....+.|.+...+.+|.|++ |++.+..--..+.-|.|++++.....+. ..+|.+-++|-+
T Consensus 57 ~~~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 57 FVTSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp -BS-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred cceEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 45578899999999999998 6554432222366899999987654322 699999999988
No 321
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=74.61 E-value=15 Score=35.09 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=48.0
Q ss_pred cEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec---CceeEEEEEEEEcC
Q 007848 47 SQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVD 123 (587)
Q Consensus 47 ~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~---e~~q~L~~~V~D~D 123 (587)
..+++.|.+-+.+..+.....--||.+.+-. .++..-..+|....-+.+|.|+|.+.|++.. +..-.|.|.||+..
T Consensus 10 ~~friki~~~~~~~~~~~~~~~l~V~~~Ly~-g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~ 88 (178)
T cd08399 10 RKFRVKILGIDIPVLPRNTDLTVFVEANIQH-GQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK 88 (178)
T ss_pred CCEEEEEEeecccCcCCCCceEEEEEEEEEE-CCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence 4577777776666554322223455554333 2222223377777778889999998887443 34458999999974
Q ss_pred C
Q 007848 124 T 124 (587)
Q Consensus 124 ~ 124 (587)
.
T Consensus 89 ~ 89 (178)
T cd08399 89 A 89 (178)
T ss_pred c
Confidence 3
No 322
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=73.10 E-value=17 Score=38.45 Aligned_cols=99 Identities=15% Similarity=0.175 Sum_probs=70.5
Q ss_pred EEEE-EEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec-------CceeEEEEEEE
Q 007848 49 IELS-FSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF-------EVVQTLVFRIY 120 (587)
Q Consensus 49 ieL~-v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~-------e~~q~L~~~V~ 120 (587)
|-|+ +++++.+... +..-.+...+.+ +.-.|+.+..+-.|.|+..+..++.- -...+|++++|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~ng------~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFNG------ESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeCC------ceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEE
Confidence 3455 5788887762 233455556643 58899999999999999998876542 12358999999
Q ss_pred EcCCCccccccccccccccccccceeeecchh---hcc--CCeeEEEEccc
Q 007848 121 DVDTQFHNVDVKTLKLVEQQFLGEATCTLSQI---VTR--KNRSLTLDLVR 166 (587)
Q Consensus 121 D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l---~~~--~~~~l~~~L~~ 166 (587)
-.|... +..+.+|.+.++|..+ ... .....|++|..
T Consensus 73 a~~~~~----------~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~ 113 (340)
T PF12416_consen 73 AVDGST----------GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLS 113 (340)
T ss_pred EecCCC----------CcceeccEEEEEccccccccccccccCCCeeEccc
Confidence 999431 5788999999999887 222 23447998854
No 323
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=73.02 E-value=12 Score=34.08 Aligned_cols=57 Identities=25% Similarity=0.262 Sum_probs=39.9
Q ss_pred EeeeeeecCC-CCCceeeeEEEEeec---CceeEEEEEEEEcCCCcccccccccccccc----ccccceeeecchh
Q 007848 85 VGRTEVVLNS-LNPTWITKHIITYQF---EVVQTLVFRIYDVDTQFHNVDVKTLKLVEQ----QFLGEATCTLSQI 152 (587)
Q Consensus 85 ~~rTevi~~t-lNP~w~e~f~~~~~~---e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~----d~LG~~~i~L~~l 152 (587)
...|....-+ .+|.|+|.+.|.+.. +..-.|.|.||+.+.. ... ..||.+.++|-+-
T Consensus 21 ~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~-----------~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 21 VQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSK-----------KKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp EEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECS-----------TTT--EEEEEEEEEEESB-T
T ss_pred eeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCC-----------CccccceeEEEEEEEEeECC
Confidence 4477777766 899999999887543 3446899999998764 222 6899988887654
No 324
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=72.82 E-value=23 Score=33.65 Aligned_cols=42 Identities=24% Similarity=0.365 Sum_probs=30.6
Q ss_pred eEeeeeeecCCCCCceeeeEEEEeecCc--eeEEEEEEEEcCCC
Q 007848 84 EVGRTEVVLNSLNPTWITKHIITYQFEV--VQTLVFRIYDVDTQ 125 (587)
Q Consensus 84 ~~~rTevi~~tlNP~w~e~f~~~~~~e~--~q~L~~~V~D~D~~ 125 (587)
...-|.++..+.+|.|++.|.+....+. ..+|.|.+|+.+..
T Consensus 52 ~s~~~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~ 95 (178)
T cd08679 52 RSEYTSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSK 95 (178)
T ss_pred ceeEEEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccc
Confidence 3344445545599999999988765543 56999999998754
No 325
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=71.78 E-value=74 Score=28.53 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=36.2
Q ss_pred CCCCceee-ceEEeeecC------CCCCcEEEEEEeccCCCCCceeEEEEEechhhhhc
Q 007848 249 ETKPTWKS-VFLNIQQVG------SKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEKL 300 (587)
Q Consensus 249 tlnP~Wne-f~~~~~~l~------~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~~ 300 (587)
+-.-.|++ |.+++.... -....++|.|+.....++...+|.+.++|.++...
T Consensus 49 ~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~ 107 (143)
T PF10358_consen 49 NGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANE 107 (143)
T ss_pred ccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCc
Confidence 45667997 665554331 12457899999875444446999999999999753
No 326
>COG3864 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.21 E-value=12 Score=38.56 Aligned_cols=120 Identities=22% Similarity=0.272 Sum_probs=64.3
Q ss_pred eccccCcce---EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCc
Q 007848 341 LDYLAGGFE---LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPV 417 (587)
Q Consensus 341 ldyi~~g~~---~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~ 417 (587)
-+||+|-.. +...+|||-|+| +. .-+..++|..|-.|+ .| +-+.++-.-+- ..+
T Consensus 250 ~~yL~g~~~e~l~~i~vaVDtSGS------------~~----d~ei~a~~~Ei~~Il-~~---~~~eltli~~D---~~v 306 (396)
T COG3864 250 QPYLRGKLSEHLIKIVVAVDTSGS------------MT----DAEIDAAMTEIFDIL-KN---KNYELTLIECD---NIV 306 (396)
T ss_pred cccccccchhhhhheEEEEecCCC------------cc----HHHHHHHHHHHHHHH-hC---CCcEEEEEEec---chh
Confidence 467776553 668899999997 44 245566677777776 22 22333333321 000
Q ss_pred eeEEe-CCCCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHH
Q 007848 418 SHCFN-LNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQET 496 (587)
Q Consensus 418 ~~~f~-l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t 496 (587)
-.-+- =.|+..+|+. .=+|-|.|+||+++.-+ . ..=.+|+.+|||-- |....
T Consensus 307 ~~~~~~r~g~~~~~~~-----------------~ggG~Tdf~Pvfeylek----~-----~~~~~lIyfTDG~g-d~p~~ 359 (396)
T COG3864 307 RRMYRVRKGRDMKKKL-----------------DGGGGTDFSPVFEYLEK----N-----RMECFLIYFTDGMG-DQPLV 359 (396)
T ss_pred hhhhccCCcccCCccc-----------------CCCCCccccHHHHHHHh----h-----cccceEEEEccCCC-Ccccc
Confidence 00000 0122222222 22577999999986522 1 11278999999954 22221
Q ss_pred HHHHHHccCCCeEEEEEecC
Q 007848 497 KDALVKASDLPLSILIIGVG 516 (587)
Q Consensus 497 ~~~i~~as~lPlSiiiVGvG 516 (587)
+-.-|+=|+.-|-|
T Consensus 360 ------~r~~~~lwVl~~~~ 373 (396)
T COG3864 360 ------FRPKVLLWVLTGAK 373 (396)
T ss_pred ------cCCcceEEEecCCc
Confidence 22345667776654
No 327
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=70.47 E-value=21 Score=33.39 Aligned_cols=93 Identities=17% Similarity=0.096 Sum_probs=55.2
Q ss_pred cEEEEEE-EEeCCCCCCCCCCCCcEEEEEEecCCCc-eeeEeeeeeecCCCCCceeeeEEEEeec---CceeEEEEEEEE
Q 007848 47 SQIELSF-SAADLRDRDVLSKSDPMLVVYMKARDGA-LVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYD 121 (587)
Q Consensus 47 ~~ieL~v-~arnL~~~D~~gksDPyv~v~~~~~~~~-~~~~~rTevi~~tlNP~w~e~f~~~~~~---e~~q~L~~~V~D 121 (587)
+++.+.+ +++++.-.+ .+|-||.+.+-.+ ++ ......|..+.. .+|.|+|.+.|++.. +..-.|.|.||+
T Consensus 8 ~~~~v~i~~~~~~~~~~---~~~l~V~v~l~~g-~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~ 82 (158)
T cd08398 8 SNLRIKILCATYVNVND---IDKIYVRTGIYHG-GEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICS 82 (158)
T ss_pred CCeEEEEEeeccCCCCC---cCeEEEEEEEEEC-CEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEE
Confidence 4566664 556665433 4688888866542 22 112334554543 679999998887543 344589999999
Q ss_pred cCCCccccccccccccccccccceeeecch
Q 007848 122 VDTQFHNVDVKTLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 122 ~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~ 151 (587)
...... +-.....+|.+.++|-+
T Consensus 83 ~~~~~~-------~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 83 VKGRKG-------AKEEHCPLAWGNINLFD 105 (158)
T ss_pred EecccC-------CCCceEEEEEEEEEEEC
Confidence 764200 00123468888877754
No 328
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=69.61 E-value=16 Score=34.63 Aligned_cols=76 Identities=14% Similarity=0.246 Sum_probs=45.9
Q ss_pred cEEEEEE-EEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeec---CceeEEEEEEEEc
Q 007848 47 SQIELSF-SAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDV 122 (587)
Q Consensus 47 ~~ieL~v-~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~---e~~q~L~~~V~D~ 122 (587)
+.+.+.+ ++.+|.-.+ ..++-||.+.+-.+.........|+.+.-+-+|.|+|.+.|++.. +..-.|.|.||+.
T Consensus 8 ~~f~i~i~~~~~~~~~~--~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNAAE--RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCccCC--CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 4455654 456665422 235667776554311111124466666656779999999887543 3445899999997
Q ss_pred CC
Q 007848 123 DT 124 (587)
Q Consensus 123 D~ 124 (587)
..
T Consensus 86 ~~ 87 (173)
T cd08693 86 SK 87 (173)
T ss_pred cc
Confidence 64
No 329
>PF04056 Ssl1: Ssl1-like; InterPro: IPR007198 Ssl1-like proteins are 40 kDa subunits of the transcription factor II H complex. This domain is often found associated with the C2H2 type Zn-finger (IPR007087 from INTERPRO).; GO: 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent
Probab=69.40 E-value=60 Score=31.43 Aligned_cols=132 Identities=17% Similarity=0.206 Sum_probs=83.6
Q ss_pred CCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCCh
Q 007848 378 GRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLF 457 (587)
Q Consensus 378 ~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f 457 (587)
.++|.++-+++.+-..++.|=+.+-+--.|+-.. .++...-..+|+|++ +..+++.++... ....|--.
T Consensus 13 ~~PtRl~~~~~~l~~Fv~eff~qNPiSqlgii~~-~~~~a~~ls~lsgn~--------~~h~~~L~~~~~-~~~~G~~S- 81 (193)
T PF04056_consen 13 LKPTRLQCVLKALEEFVREFFDQNPISQLGIIVM-RDGRAERLSELSGNP--------QEHIEALKKLRK-LEPSGEPS- 81 (193)
T ss_pred CCccHHHHHHHHHHHHHHHHHhcCChhheeeeee-ecceeEEeeecCCCH--------HHHHHHHHHhcc-CCCCCChh-
Confidence 3689999999999998888876666777777654 455555577888853 455666655543 34556444
Q ss_pred HHHHHHHHHHHHhhhc--cCCCceEEEEEE---eCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCCchhhhhcc
Q 007848 458 GPVISNAALIAGQSLA--NHGQKYFVLLII---TDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEMEILD 527 (587)
Q Consensus 458 ~~ii~~~~~~a~~~~~--~~~~~y~vllil---tdG~i~d~~~t~~~i~~as~lPlSiiiVGvG~~~f~~m~~ld 527 (587)
+..+.+.|..... .....=-||+|+ |.-+-.|..+|++.+++. + +-+=|||++.+ -.-+++|-
T Consensus 82 ---LqN~Le~A~~~L~~~p~~~srEIlvi~gSl~t~Dp~di~~ti~~l~~~-~--IrvsvI~laaE-v~I~k~i~ 149 (193)
T PF04056_consen 82 ---LQNGLEMARSSLKHMPSHGSREILVIFGSLTTCDPGDIHETIESLKKE-N--IRVSVISLAAE-VYICKKIC 149 (193)
T ss_pred ---HHHHHHHHHHHHhhCccccceEEEEEEeecccCCchhHHHHHHHHHHc-C--CEEEEEEEhHH-HHHHHHHH
Confidence 4555555554432 111233688887 555667888999999876 3 44455666553 23445554
No 330
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=67.89 E-value=15 Score=31.39 Aligned_cols=58 Identities=14% Similarity=0.242 Sum_probs=36.3
Q ss_pred CCcEEEEEEEcCCCceee-EEecceecCCCCCceee---ceEEeeecCCCCCcEEEEEEeccCC
Q 007848 222 NDPFLVISKIVESGTHIP-VCKTEVLKNETKPTWKS---VFLNIQQVGSKDSPLIIECFNFNSN 281 (587)
Q Consensus 222 sDPyv~v~~~~~~g~~~~-~~kT~vik~tlnP~Wne---f~~~~~~l~~~~~~L~i~V~D~d~~ 281 (587)
+|-||.+.+-. +++... ...|..+.-...+.||| |.+.+..| ..+..|.|.+|+....
T Consensus 32 ~~l~v~~~l~~-g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~L-Pr~a~L~~~i~~~~~~ 93 (100)
T smart00142 32 SDLYVEIQLYH-GGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDL-PREARLCITIYEVKNP 93 (100)
T ss_pred ceEEEEEEEEE-CCEEccCcEEecccCCCCCcccceeEEccCchhcC-ChhhEEEEEEEEeeCC
Confidence 57889987755 343321 22455444455689999 44444544 3467899999997543
No 331
>PF03731 Ku_N: Ku70/Ku80 N-terminal alpha/beta domain; InterPro: IPR005161 The Ku heterodimer (composed of Ku70 P12956 from SWISSPROT and Ku80 P13010 from SWISSPROT) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the N-terminal alpha/beta domain. This domain only makes a small contribution to the dimer interface. The domain comprises a six stranded beta sheet of the Rossman fold [].; PDB: 1JEQ_A 1JEY_A.
Probab=66.81 E-value=41 Score=32.83 Aligned_cols=153 Identities=10% Similarity=0.079 Sum_probs=75.5
Q ss_pred EEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhccc---ccCCCCcceeeecccCC-----CCCceeEEeC
Q 007848 352 FMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQV---YDSDKRFPAWGFGARPI-----DGPVSHCFNL 423 (587)
Q Consensus 352 ~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~---yd~d~~~~~~gFG~~~~-----~~~~~~~f~l 423 (587)
+++.||.+. |+|-..+. ...+.+.|++++-.+++. ..+.-.+-++.||.... .....|.|.+
T Consensus 2 ~vflID~s~---------sM~~~~~~-~~~~l~~al~~i~~~~~~ki~~~~kD~vgvvl~gt~~t~n~~~~~~~~~i~~l 71 (224)
T PF03731_consen 2 TVFLIDVSP---------SMFEPSSE-SESPLEEALKAIEDLMQQKIISSPKDEVGVVLFGTDETNNPDEDSGYENIFVL 71 (224)
T ss_dssp EEEEEE-SC---------GGGS-BTT-CS-HHHHHHHHHHHHHHHHHHTT---EEEEEEES-SS-BST-TTT-STTEEEE
T ss_pred EEEEEECCH---------HHCCCCCC-cchhHHHHHHHHHHHHHHHHcCCCCCeEEEEEEcCCCCCCcccccCCCceEEe
Confidence 578999999 55543333 223788888888776653 23334589999998732 2223455554
Q ss_pred CCCCCCCcccCHHHHHHHHHhhh---cceeecCCCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCc-----CCHHH
Q 007848 424 NGSNSYCEVEGIPGIMMAYTSAL---HNVNLAGPTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVV-----TDLQE 495 (587)
Q Consensus 424 ~~~~~~p~~~g~~~i~~~Y~~~~---~~v~~~gpt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i-----~d~~~ 495 (587)
. ...-|...-+..+.+.-.... ..-.-.....+..++-.|..+-+......+...--++++||++- ++++.
T Consensus 72 ~-~l~~~~~~~l~~L~~~~~~~~~~~~~~~~~~~~~l~~al~v~~~~~~~~~~~~k~~~krI~l~Td~d~p~~~~~~~~~ 150 (224)
T PF03731_consen 72 Q-PLDPPSAERLKELEELLKPGDKFENFFSGSDEGDLSDALWVASDMFRERTCKKKKNKKRIFLFTDNDGPHEDDDELER 150 (224)
T ss_dssp E-ECC--BHHHHHHHHTTSHHHHHHHHHC-SSS---HHHHHHHHHHHHHCHCTTS-ECEEEEEEEES-SSTTT-CCCHHH
T ss_pred e-cCCccCHHHHHHHHHhhcccccccccCCCCCccCHHHHHHHHHHHHHHHhhcccCCCcEEEEEeCCCCCCCCHHHHHH
Confidence 4 223343333333322111100 00111334577777777777544321123333456788998753 33445
Q ss_pred HHHH--HHHccCCCeEEEEEec
Q 007848 496 TKDA--LVKASDLPLSILIIGV 515 (587)
Q Consensus 496 t~~~--i~~as~lPlSiiiVGv 515 (587)
+++. ..+....-+.+..+.+
T Consensus 151 ~~~~l~~~Dl~~~~i~~~~~~l 172 (224)
T PF03731_consen 151 IIQKLKAKDLQDNGIEIELFFL 172 (224)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEC
T ss_pred HHHhhccccchhcCcceeEeec
Confidence 5555 4455567777777777
No 332
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=63.59 E-value=24 Score=29.82 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=47.1
Q ss_pred CCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCCccccccccccccccccccc
Q 007848 65 SKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGE 144 (587)
Q Consensus 65 gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~ 144 (587)
|-++-.|++.+.+ +.+++|.-.+- .+..|++.|.++. +....|.+.||=.|-. .+-|-
T Consensus 7 ~~~eV~avLklDn-----~~VgqT~Wk~~-s~q~WDQ~Fti~L--dRsRELEI~VywrD~R--------------slCav 64 (98)
T cd08687 7 GCSEVSAVLKLDN-----TVVGQTQWKPK-SNQAWDQSFTLEL--ERSRELEIAVYWRDWR--------------SLCAV 64 (98)
T ss_pred cccceEEEEEEcC-----eEEeecccccc-ccccccceeEEEe--ecccEEEEEEEEecch--------------hhhhh
Confidence 3478888888854 26899977654 6789999998776 4566999999977743 34555
Q ss_pred eeeecch
Q 007848 145 ATCTLSQ 151 (587)
Q Consensus 145 ~~i~L~~ 151 (587)
..+.|.+
T Consensus 65 ~~lrLEd 71 (98)
T cd08687 65 KFLKLED 71 (98)
T ss_pred eeeEhhh
Confidence 5666666
No 333
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=59.22 E-value=29 Score=32.76 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=56.6
Q ss_pred cEEEEEEE-EeCCCCCCCCCCCCcEEEEEEecCCCce-eeEeeeeeec----CCCCCceeeeEEEEeec---CceeEEEE
Q 007848 47 SQIELSFS-AADLRDRDVLSKSDPMLVVYMKARDGAL-VEVGRTEVVL----NSLNPTWITKHIITYQF---EVVQTLVF 117 (587)
Q Consensus 47 ~~ieL~v~-arnL~~~D~~gksDPyv~v~~~~~~~~~-~~~~rTevi~----~tlNP~w~e~f~~~~~~---e~~q~L~~ 117 (587)
..+.++|. +.+++.......+|-||.+.+-.+ ++. .....|+... -...+.|+|.+.|.... +..-.|.|
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g-~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~i 86 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHG-GRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVL 86 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEEC-CEECcCceeccccccccCccccccccceEECccchhcCChhHEEEE
Confidence 55677765 577776655456788888866542 221 1122343221 12357799998876432 34458999
Q ss_pred EEEEcCCCcc-ccccccccccccccccceeeecch
Q 007848 118 RIYDVDTQFH-NVDVKTLKLVEQQFLGEATCTLSQ 151 (587)
Q Consensus 118 ~V~D~D~~~~-~~~~~~~~l~~~d~LG~~~i~L~~ 151 (587)
.||+...... ..+. .-..+..||.+.++|-+
T Consensus 87 tl~~~~~~~~~~~~~---~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 87 TLYGTTSSPDGGSNK---QRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEEecCCcccccc---ccccceEEEEEeEeeEc
Confidence 9999764300 0000 00134578877777644
No 334
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=54.82 E-value=70 Score=27.20 Aligned_cols=71 Identities=15% Similarity=0.030 Sum_probs=43.6
Q ss_pred EEEeCCCCCCCCCCCCcEEEEEEecCCCc-eeeEeeeeeecCCCCCceeeeEEEEeec---CceeEEEEEEEEcCC
Q 007848 53 FSAADLRDRDVLSKSDPMLVVYMKARDGA-LVEVGRTEVVLNSLNPTWITKHIITYQF---EVVQTLVFRIYDVDT 124 (587)
Q Consensus 53 v~arnL~~~D~~gksDPyv~v~~~~~~~~-~~~~~rTevi~~tlNP~w~e~f~~~~~~---e~~q~L~~~V~D~D~ 124 (587)
...+++.-....+.+|-||.+.+-.+ ++ ......|..+.-...+.|+|.+.|++.. +..-.|.|.||+...
T Consensus 18 ~~~~~~~l~~~~~~~~l~v~~~l~~g-~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 18 ALIHGIPLNWSRDYSDLYVEIQLYHG-GKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred EEeeCCCcccccCcceEEEEEEEEEC-CEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 34445444333334678888866542 22 1123356666666779999998886433 344589999999654
No 335
>KOG2353 consensus L-type voltage-dependent Ca2+ channel, alpha2/delta subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=54.20 E-value=1.1e+02 Score=37.44 Aligned_cols=171 Identities=16% Similarity=0.210 Sum_probs=114.4
Q ss_pred cccEEEeEeeeeeeeeeeccccCcce-EEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCC
Q 007848 324 NSQLFVDKFSESVQYTFLDYLAGGFE-LNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKR 402 (587)
Q Consensus 324 ~G~i~l~~~~~~~~~sFldyi~~g~~-~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~ 402 (587)
...|-+-.|.. +--||.+-.. -.+.|-+|-++| +. .-.+.-|-..+..+|+-..++-.
T Consensus 204 ~~~idl~D~R~-----r~Wyi~aAt~pKdiviLlD~SgS------------m~----g~~~~lak~tv~~iLdtLs~~Df 262 (1104)
T KOG2353|consen 204 DNSIDLYDCRN-----RSWYIQAATSPKDIVILLDVSGS------------MS----GLRLDLAKQTVNEILDTLSDNDF 262 (1104)
T ss_pred CCcceeeeccc-----ccccccccCCccceEEEEecccc------------cc----chhhHHHHHHHHHHHHhcccCCe
Confidence 45556656643 2346666554 788899999996 33 13344555556666766666666
Q ss_pred cceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCChHHHHHHHHHHHHhhh-----ccCCC
Q 007848 403 FPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGPVISNAALIAGQSL-----ANHGQ 477 (587)
Q Consensus 403 ~~~~gFG~~~~~~~~~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ii~~~~~~a~~~~-----~~~~~ 477 (587)
+-+.-|+-. ...++-|| .++-+++--.-.+..++.+..+++.|-+++.-..+.|-+.-...- .++..
T Consensus 263 vni~tf~~~--~~~v~pc~------~~~lvqAt~~nk~~~~~~i~~l~~k~~a~~~~~~e~aF~lL~~~n~s~~~~~~~~ 334 (1104)
T KOG2353|consen 263 VNILTFNSE--VNPVSPCF------NGTLVQATMRNKKVFKEAIETLDAKGIANYTAALEYAFSLLRDYNDSRANTQRSP 334 (1104)
T ss_pred EEEEeeccc--cCcccccc------cCceeecchHHHHHHHHHHhhhccccccchhhhHHHHHHHHHHhccccccccccc
Confidence 777777654 22334453 356777777778888999999999999999999999887655321 12344
Q ss_pred ceEEEEEEeCCCcCCHHHHHHHHHHcc-CCCeEEEEEecCCCCchhh
Q 007848 478 KYFVLLIITDGVVTDLQETKDALVKAS-DLPLSILIIGVGGADFKEM 523 (587)
Q Consensus 478 ~y~vlliltdG~i~d~~~t~~~i~~as-~lPlSiiiVGvG~~~f~~m 523 (587)
-+.+.+++|||...+..+..+.--.-. ..-++=..||-+..+|..+
T Consensus 335 C~~~iml~tdG~~~~~~~If~~yn~~~~~Vrvftflig~~~~~~~~~ 381 (1104)
T KOG2353|consen 335 CNQAIMLITDGVDENAKEIFEKYNWPDKKVRVFTFLIGDEVYDLDEI 381 (1104)
T ss_pred cceeeEEeecCCcccHHHHHHhhccCCCceEEEEEEecccccccccc
Confidence 799999999999988888877766542 2334445556555566543
No 336
>COG4245 TerY Uncharacterized protein encoded in toxicity protection region of plasmid R478, contains von Willebrand factor (vWF) domain [General function prediction only]
Probab=51.30 E-value=63 Score=31.07 Aligned_cols=81 Identities=26% Similarity=0.276 Sum_probs=48.2
Q ss_pred ceeecCCCChHHHHHHHHHHHHhhhc---cCCCce--EEEEEEeCCCcCCHHHHHHHHHHcc-CCCeEEEEEecC--CCC
Q 007848 448 NVNLAGPTLFGPVISNAALIAGQSLA---NHGQKY--FVLLIITDGVVTDLQETKDALVKAS-DLPLSILIIGVG--GAD 519 (587)
Q Consensus 448 ~v~~~gpt~f~~ii~~~~~~a~~~~~---~~~~~y--~vlliltdG~i~d~~~t~~~i~~as-~lPlSiiiVGvG--~~~ 519 (587)
.+.-.|-|-....|+.+.+...+..+ .+...| -+..++|||..+|-=.--.++.+.- .--.|++..++| ++|
T Consensus 72 ~L~a~GgT~lGaAl~~a~d~Ie~~~~~~~a~~kgdyrP~vfLiTDG~PtD~w~~~~~~~~~~~~~~k~v~a~~~G~~~ad 151 (207)
T COG4245 72 ILTAQGGTPLGAALTLALDMIEERKRKYDANGKGDYRPWVFLITDGEPTDDWQAGAALVFQGERRAKSVAAFSVGVQGAD 151 (207)
T ss_pred ceecCCCCchHHHHHHHHHHHHHHHhhcccCCccccceEEEEecCCCcchHHHhHHHHhhhcccccceEEEEEecccccc
Confidence 45556889999999999988876532 222222 2567789999966533232333322 223455555444 567
Q ss_pred chhhhhccc
Q 007848 520 FKEMEILDA 528 (587)
Q Consensus 520 f~~m~~ld~ 528 (587)
-..++++-+
T Consensus 152 ~~~L~qit~ 160 (207)
T COG4245 152 NKTLNQITE 160 (207)
T ss_pred cHHHHHHHH
Confidence 776666663
No 337
>KOG4428 consensus Inositol-polyphosphate 4-phosphatase [Signal transduction mechanisms]
Probab=50.91 E-value=26 Score=39.28 Aligned_cols=76 Identities=14% Similarity=0.242 Sum_probs=56.9
Q ss_pred ccEEEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC--ceeEEEEEEEEcC
Q 007848 46 FSQIELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE--VVQTLVFRIYDVD 123 (587)
Q Consensus 46 ~~~ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e--~~q~L~~~V~D~D 123 (587)
...+|+.+.| -+. ...|++.||-+.+....--|++...|+++..+.||.|-....|.-..+ ....+++.|||..
T Consensus 34 ep~lEf~Lac--tp~--~drK~nt~va~sv~hp~~~~t~~s~tei~egt~~piFL~~~~f~~~~~in~~T~~kl~vydvk 109 (813)
T KOG4428|consen 34 EPILEFSLAC--TPS--LDRKPNTFVAVSVTHPQAFWTKHSQTEIIEGTNNPIFLSSIAFFQDSLINQMTQVKLSVYDVK 109 (813)
T ss_pred ccceeEEecc--Cce--eccCCCceEEEEeeccceeeeeccCceeeeccCCceeeeehhhhhhcchhhhhheeEEEEeec
Confidence 3679999999 233 345889999999887555699999999999999999998776532222 2346788899965
Q ss_pred CC
Q 007848 124 TQ 125 (587)
Q Consensus 124 ~~ 125 (587)
..
T Consensus 110 D~ 111 (813)
T KOG4428|consen 110 DR 111 (813)
T ss_pred cc
Confidence 43
No 338
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=45.41 E-value=44 Score=32.19 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=37.8
Q ss_pred eeEEecceecCCCCCceee-ce--EEeeecCCCCCcEEEEEEeccCCCC--CceeEEEEEech
Q 007848 238 IPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSNGK--HDLIGKVQKSLA 295 (587)
Q Consensus 238 ~~~~kT~vik~tlnP~Wne-f~--~~~~~l~~~~~~L~i~V~D~d~~~~--dd~IG~~~i~l~ 295 (587)
...++|-|..-+.+|.|+| ++ +|.+.+ ...-|.|+++......+ ...+|-.-++|-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi~lP~~~~--~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKLPIPIDKF--RGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEEecChhhC--CCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 4578999999899999998 55 444433 25678898876443221 256777777664
No 339
>PF14909 SPATA6: Spermatogenesis-assoc protein 6
Probab=42.84 E-value=1.3e+02 Score=27.46 Aligned_cols=87 Identities=15% Similarity=0.120 Sum_probs=56.0
Q ss_pred EEEEEEEeCCCCCCCCCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecC------------ceeEEE
Q 007848 49 IELSFSAADLRDRDVLSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFE------------VVQTLV 116 (587)
Q Consensus 49 ieL~v~arnL~~~D~~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e------------~~q~L~ 116 (587)
+||.|+|--=|.-=...+-|-|..|++.+ +..||+...-..==.|++.|.|+=.|. +.+.++
T Consensus 2 veL~i~aVTCPGv~L~~~~~vyL~v~~lg------~~~~T~~~ppvFPllfhek~~FeK~F~~~~dp~~l~~~Le~e~~~ 75 (140)
T PF14909_consen 2 VELEIHAVTCPGVWLCDKGDVYLSVCILG------QYKRTRCLPPVFPLLFHEKFRFEKVFPNAVDPAQLADLLEDETVY 75 (140)
T ss_pred eEEEEEEEecCCeEeCCCCCEEEEEEEcc------cEeecccCCCcCCeeEeeEEEeEEEecCCCCHHHHHHHhhcCcEE
Confidence 56665554333333334668999999975 588998777666556788888864442 234788
Q ss_pred EEEEEcCCCccccccccccccccccccceeeecchhh
Q 007848 117 FRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIV 153 (587)
Q Consensus 117 ~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~ 153 (587)
++++.+... ....|+..+-++.+++
T Consensus 76 iELiQl~~~------------~g~iLA~ye~n~rDfL 100 (140)
T PF14909_consen 76 IELIQLVPP------------AGEILAYYEENTRDFL 100 (140)
T ss_pred EEEEEEeCC------------CCcEEEEEeccccceE
Confidence 888887653 2455666666665554
No 340
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=42.54 E-value=1e+02 Score=28.97 Aligned_cols=68 Identities=9% Similarity=0.074 Sum_probs=43.8
Q ss_pred CcEEEEEEEcCCCceeeEEecceecCC--CCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 223 DPFLVISKIVESGTHIPVCKTEVLKNE--TKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 223 DPyv~v~~~~~~g~~~~~~kT~vik~t--lnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
.-|+++++ |++ .+.+|+...-+ ..-.|++ |.+.+.. .=..|.++||.... ..+.+|+.+.+++-....
T Consensus 38 ~~~ikl~~---N~k--~V~~T~~~~l~~dF~v~f~~~f~v~i~~---~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~~ 108 (168)
T PF15625_consen 38 RYYIKLFF---NDK--EVSRTRSRPLWSDFRVHFNEIFNVQITR---WPESIKLEIYEKSG-LSDRLLAEVFVPVPGSTV 108 (168)
T ss_pred eEEEEEEE---CCE--EEEeeeeEecCCCeEEeccCEEEEEEec---CCCEEEEEEEEccC-ccceEEEEEEeeCCCCcc
Confidence 45888888 443 46677654431 2223444 4455443 24689999998776 667899999999876643
No 341
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=41.66 E-value=1e+02 Score=30.36 Aligned_cols=125 Identities=11% Similarity=0.259 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecCCCChHH
Q 007848 380 PNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAGPTLFGP 459 (587)
Q Consensus 380 ~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~gpt~f~~ 459 (587)
.|+|++++++|-..+-+...|...-+.|=|...+.+. |++ =++.++..|+- ..| +-+.+.=.|
T Consensus 117 k~DYe~~v~aik~~~ppl~k~e~~vlmgHGt~h~s~~---~Ya-----------cLd~~~~~~~f--~~v-~v~~ve~yP 179 (265)
T COG4822 117 KNDYEICVEAIKDQIPPLNKDEILVLMGHGTDHHSNA---AYA-----------CLDHVLDEYGF--DNV-FVAAVEGYP 179 (265)
T ss_pred hhhHHHHHHHHHHhcCCcCcCeEEEEEecCCCccHHH---HHH-----------HHHHHHHhcCC--Cce-EEEEecCCC
Confidence 3999999999999999998888888888888732221 111 13344443321 011 112233346
Q ss_pred HHHHHHHHHHhhhccCCCceEEEEEEeCC--CcCCHH----HHHHHHHHccCCCeEEEEEecCCC-Cchhh
Q 007848 460 VISNAALIAGQSLANHGQKYFVLLIITDG--VVTDLQ----ETKDALVKASDLPLSILIIGVGGA-DFKEM 523 (587)
Q Consensus 460 ii~~~~~~a~~~~~~~~~~y~vlliltdG--~i~d~~----~t~~~i~~as~lPlSiiiVGvG~~-~f~~m 523 (587)
-+..++++-+++. -..--.+=|.|+-| .+.||. ++-..|.++...+.-...=|+|.- .|+.|
T Consensus 180 ~~d~vi~~l~~~~--~~~v~L~PlMlvAG~Ha~nDMasddedswk~il~~~G~~v~~~l~GLGE~~~iq~i 248 (265)
T COG4822 180 LVDTVIEYLRKNG--IKEVHLIPLMLVAGDHAKNDMASDDEDSWKNILEKNGFKVEVYLHGLGENPAIQAI 248 (265)
T ss_pred cHHHHHHHHHHcC--CceEEEeeeEEeechhhhhhhcccchHHHHHHHHhCCceeEEEeecCCCcHHHHHH
Confidence 6677777766542 12233444566677 478887 899999999999999999999975 56655
No 342
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=41.54 E-value=66 Score=30.48 Aligned_cols=56 Identities=13% Similarity=0.221 Sum_probs=38.1
Q ss_pred EEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC-----CCCceeEEEEEechh
Q 007848 240 VCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN-----GKHDLIGKVQKSLAD 296 (587)
Q Consensus 240 ~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~-----~~dd~IG~~~i~l~~ 296 (587)
.++|-+..+ .+|.|++ |++.+..--....-|.|++++.... .....+|.+-++|-+
T Consensus 54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 455555555 8999997 6555432112367899999987643 235689999988876
No 343
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=38.71 E-value=80 Score=30.62 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=37.9
Q ss_pred eeeEEecceecCCCCCceee-ce--EEeeecCCCCCcEEEEEEeccCC-CCC---ceeEEEEEech
Q 007848 237 HIPVCKTEVLKNETKPTWKS-VF--LNIQQVGSKDSPLIIECFNFNSN-GKH---DLIGKVQKSLA 295 (587)
Q Consensus 237 ~~~~~kT~vik~tlnP~Wne-f~--~~~~~l~~~~~~L~i~V~D~d~~-~~d---d~IG~~~i~l~ 295 (587)
....++|-|..-+.+|.|+| ++ +|.+.+ ...-|.|+++..... .++ ..+|-.-++|-
T Consensus 51 ~~se~~S~V~Yh~~~P~W~EtIKl~lP~~~~--~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 51 PIDEYKSVIYYQVDKPKWFETFKVAIPIEDF--KSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred cceeEEEEEEeecCCCCCceeEEEecChhhC--CCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 35578898988889999998 54 444433 256889998765432 122 45676666654
No 344
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=38.43 E-value=46 Score=28.98 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=30.6
Q ss_pred EEecceecCCCCCceee---ceEEeeec---CCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 240 VCKTEVLKNETKPTWKS---VFLNIQQV---GSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 240 ~~kT~vik~tlnP~Wne---f~~~~~~l---~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
.+.|.++. ..+|.++- +.+..+.+ .-....+.+|++.--. ...+.||.+++++.++.+
T Consensus 12 tq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~ 75 (107)
T PF11618_consen 12 TQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLE 75 (107)
T ss_dssp -EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH
T ss_pred eeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhc
Confidence 56777776 67999984 55555544 1125789999998663 446899999999999975
No 345
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=37.95 E-value=1.1e+02 Score=28.79 Aligned_cols=69 Identities=13% Similarity=0.210 Sum_probs=45.8
Q ss_pred CCCcEEEEEEecCCCceeeEeeeeeecC--CCCCceeeeEEEEeecCceeEEEEEEEEcCCCcccccccccccccccccc
Q 007848 66 KSDPMLVVYMKARDGALVEVGRTEVVLN--SLNPTWITKHIITYQFEVVQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLG 143 (587)
Q Consensus 66 ksDPyv~v~~~~~~~~~~~~~rTevi~~--tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG 143 (587)
+.--|++|++.+ + ++.+|+...- +..=.|++.|.+.+. ...+.|.++||.... ..+.+|+
T Consensus 36 ~~~~~ikl~~N~---k--~V~~T~~~~l~~dF~v~f~~~f~v~i~-~~Pesi~l~i~E~~~------------~~~~~la 97 (168)
T PF15625_consen 36 KTRYYIKLFFND---K--EVSRTRSRPLWSDFRVHFNEIFNVQIT-RWPESIKLEIYEKSG------------LSDRLLA 97 (168)
T ss_pred heeEEEEEEECC---E--EEEeeeeEecCCCeEEeccCEEEEEEe-cCCCEEEEEEEEccC------------ccceEEE
Confidence 345688888853 3 6888877643 223345566666553 355699999999764 2577888
Q ss_pred ceeeecchh
Q 007848 144 EATCTLSQI 152 (587)
Q Consensus 144 ~~~i~L~~l 152 (587)
++.+++-..
T Consensus 98 ~v~vpvP~~ 106 (168)
T PF15625_consen 98 EVFVPVPGS 106 (168)
T ss_pred EEEeeCCCC
Confidence 888886543
No 346
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=37.74 E-value=86 Score=29.95 Aligned_cols=60 Identities=13% Similarity=0.212 Sum_probs=39.9
Q ss_pred eeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCC------CceeEEEEEechh
Q 007848 237 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGK------HDLIGKVQKSLAD 296 (587)
Q Consensus 237 ~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~------dd~IG~~~i~l~~ 296 (587)
....+.|.|...+.+|.|.+ +++.+..--....-|.|++++.....+ ...+|..-++|-+
T Consensus 52 ~~~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 52 FLTEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred cceeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 34578899999999999997 554443211235689999998654322 2457777776654
No 347
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=37.47 E-value=1.4e+02 Score=28.60 Aligned_cols=60 Identities=10% Similarity=0.205 Sum_probs=40.5
Q ss_pred eeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCC--C-------CCceeEEEEEechh
Q 007848 237 HIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSN--G-------KHDLIGKVQKSLAD 296 (587)
Q Consensus 237 ~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~--~-------~dd~IG~~~i~l~~ 296 (587)
....+.|.|...+.+|.|.+ +++.+..--....-|.|++|+.... . ....+|..-++|-+
T Consensus 54 ~~~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~ 123 (185)
T cd08697 54 FTTSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK 123 (185)
T ss_pred cceEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence 45578899999999999997 5544322112356899999986521 1 13568888777765
No 348
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=34.15 E-value=1.3e+02 Score=26.20 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=32.9
Q ss_pred eEeeeeeecCCCCCceeeeEEEEeecCc-------eeEEEEEEEEcCCCccccccccccccccccccceeeecchhhccC
Q 007848 84 EVGRTEVVLNSLNPTWITKHIITYQFEV-------VQTLVFRIYDVDTQFHNVDVKTLKLVEQQFLGEATCTLSQIVTRK 156 (587)
Q Consensus 84 ~~~rTevi~~tlNP~w~e~f~~~~~~e~-------~q~L~~~V~D~D~~~~~~~~~~~~l~~~d~LG~~~i~L~~l~~~~ 156 (587)
+...|.++. ..+|.++.+-.+.+.-+. ...++++++..-. .+...+|.+.+++.+++...
T Consensus 11 Etq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g------------~d~~tla~~~i~l~~ll~~~ 77 (107)
T PF11618_consen 11 ETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALG------------SDFETLAAGQISLRPLLESN 77 (107)
T ss_dssp --EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-S------------S-EEEEEEEEE--SHHHH--
T ss_pred eeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeecc------------CCeEEEEEEEeechhhhcCC
Confidence 466777776 899999988776654332 2489999998654 35789999999999999766
Q ss_pred CeeE
Q 007848 157 NRSL 160 (587)
Q Consensus 157 ~~~l 160 (587)
+.+.
T Consensus 78 ~~~i 81 (107)
T PF11618_consen 78 GERI 81 (107)
T ss_dssp S--E
T ss_pred CceE
Confidence 5443
No 349
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=33.83 E-value=2.1e+02 Score=26.81 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=52.2
Q ss_pred CCCCcEEEEEEecCCCcee-----e-EeeeeeecCC-----CCCceeeeEEEEeecCce---eEEEEEEEEcCCCccccc
Q 007848 65 SKSDPMLVVYMKARDGALV-----E-VGRTEVVLNS-----LNPTWITKHIITYQFEVV---QTLVFRIYDVDTQFHNVD 130 (587)
Q Consensus 65 gksDPyv~v~~~~~~~~~~-----~-~~rTevi~~t-----lNP~w~e~f~~~~~~e~~---q~L~~~V~D~D~~~~~~~ 130 (587)
..++-||+-.+.-. ..|+ . .++|.+...+ -.=.|+..|.+.+..... ..|.|+||..|..
T Consensus 15 ~~~~l~~~y~~~~g-~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~----- 88 (168)
T PF07162_consen 15 EEDNLYCRYQLVHG-PDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSW----- 88 (168)
T ss_pred CCCCEEEEEEEEeC-CCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEccc-----
Confidence 34456888877642 2343 3 6788877533 345788888777665443 3899999999976
Q ss_pred cccccccccccccceeeecchh
Q 007848 131 VKTLKLVEQQFLGEATCTLSQI 152 (587)
Q Consensus 131 ~~~~~l~~~d~LG~~~i~L~~l 152 (587)
+++.+.|...+.|-.-
T Consensus 89 ------gr~~~~GYG~~~lP~~ 104 (168)
T PF07162_consen 89 ------GRDRVEGYGFCHLPTQ 104 (168)
T ss_pred ------CCeEEeEEeEEEeCCC
Confidence 8899998887776443
No 350
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=32.13 E-value=73 Score=37.55 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCcEEEEEEEcCCCceeeEEecceecCC-CCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhhhh
Q 007848 222 NDPFLVISKIVESGTHIPVCKTEVLKNE-TKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADLEK 299 (587)
Q Consensus 222 sDPyv~v~~~~~~g~~~~~~kT~vik~t-lnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l~~ 299 (587)
.++|+.+.+.. ....+|..+.+. .+|.|.. |.+... .....+.+.|-+.+..|....+|.+.++...+..
T Consensus 138 ~e~Ylt~~l~~-----~~~~~t~~~~~f~e~s~~~f~~~~~~~---h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~ 209 (887)
T KOG1329|consen 138 LENYLTVVLHK-----ARYRRTHVIYEFLENSRWSFSFDIGFA---HKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCS 209 (887)
T ss_pred ccchheeeech-----hhhhchhhhhcccccchhhhhcccccc---ccccEEEEeecCCccccceeEEEEeccchhhhhc
Confidence 68999998854 236678888877 8999997 555543 3456889999998888867899999999999986
Q ss_pred ccCCCceeEeecccc
Q 007848 300 LHSSGQGQNLFLSTA 314 (587)
Q Consensus 300 ~~~~~~~~~l~~~~k 314 (587)
......++.+++...
T Consensus 210 ~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 210 GHRIGGWFPILDNDG 224 (887)
T ss_pred cccccceeeeeccCC
Confidence 555667777776543
No 351
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=29.09 E-value=1.5e+02 Score=25.26 Aligned_cols=65 Identities=15% Similarity=0.139 Sum_probs=42.3
Q ss_pred CCCCcEEEEEEEcCCCceeeEEecceecCCCCCceee-ceEEeeecCCCCCcEEEEEEeccCCCCCceeEEEEEechhh
Q 007848 220 SRNDPFLVISKIVESGTHIPVCKTEVLKNETKPTWKS-VFLNIQQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLADL 297 (587)
Q Consensus 220 g~sDPyv~v~~~~~~g~~~~~~kT~vik~tlnP~Wne-f~~~~~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~l 297 (587)
|-++..+.+.+.+ ..+.+|.-... .+..|++ |.+.++ ..+.|+|.||-.|- ..+-|-.-+-|++.
T Consensus 7 ~~~eV~avLklDn-----~~VgqT~Wk~~-s~q~WDQ~Fti~Ld----RsRELEI~VywrD~---RslCav~~lrLEd~ 72 (98)
T cd08687 7 GCSEVSAVLKLDN-----TVVGQTQWKPK-SNQAWDQSFTLELE----RSRELEIAVYWRDW---RSLCAVKFLKLEDE 72 (98)
T ss_pred cccceEEEEEEcC-----eEEeecccccc-ccccccceeEEEee----cccEEEEEEEEecc---hhhhhheeeEhhhh
Confidence 3466677777633 23555544332 4778997 777775 37899999996543 24667777777774
No 352
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=28.44 E-value=1.7e+02 Score=25.41 Aligned_cols=31 Identities=29% Similarity=0.223 Sum_probs=23.1
Q ss_pred CCcEEEEEEeccC---CCCCceeEEEEEechhhh
Q 007848 268 DSPLIIECFNFNS---NGKHDLIGKVQKSLADLE 298 (587)
Q Consensus 268 ~~~L~i~V~D~d~---~~~dd~IG~~~i~l~~l~ 298 (587)
..+|++.+|+... .....+||.+.+++.++.
T Consensus 28 ~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~ 61 (112)
T PF14924_consen 28 SFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAF 61 (112)
T ss_pred CCceEEEEEecCCCCCCCccceeeEEEecHHHHH
Confidence 4677887765433 355679999999999886
No 353
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=28.10 E-value=1.2e+02 Score=31.52 Aligned_cols=70 Identities=14% Similarity=0.059 Sum_probs=45.0
Q ss_pred EEEE-EEEeCCCCCCC--CCCCCcEEEEEEecCCCceeeEeeeeeecCCCCCceeeeEEEEeecCceeEEEEEEEEcCCC
Q 007848 49 IELS-FSAADLRDRDV--LSKSDPMLVVYMKARDGALVEVGRTEVVLNSLNPTWITKHIITYQFEVVQTLVFRIYDVDTQ 125 (587)
Q Consensus 49 ieL~-v~arnL~~~D~--~gksDPyv~v~~~~~~~~~~~~~rTevi~~tlNP~w~e~f~~~~~~e~~q~L~~~V~D~D~~ 125 (587)
+.++ +.+|+|+-..- .-.-+-||++.... + ...||.+....+-=.|.|.|..++..-+ .+.+-||.|+..
T Consensus 53 L~~H~~~GRGLr~~p~~kglt~~~ycVle~dr---q--h~aRt~vrs~~~~f~w~e~F~~Dvv~~~--vl~~lvySW~pq 125 (442)
T KOG1452|consen 53 LYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDR---Q--HPARTRVRSSGPGFAWAEDFKHDVVNIE--VLHYLVYSWPPQ 125 (442)
T ss_pred EEEEEecccccccChhccCceeeeeeeeeecc---c--CccccccccCCCCccchhhceeecccce--eeeEEEeecCch
Confidence 4444 56788864332 33457888887642 1 3556655555555678899988765433 678889999865
No 354
>PF12843 DUF3820: Protein of unknown function (DUF3820); InterPro: IPR024530 This protein family is mostly found in bacteria and is currently functionally uncharacterised.
Probab=28.06 E-value=38 Score=26.84 Aligned_cols=28 Identities=21% Similarity=0.562 Sum_probs=23.5
Q ss_pred eeCcccCCcHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 007848 550 VPLKDVQNGEISVVQALLAELPSQFLTYMRTRDIQ 584 (587)
Q Consensus 550 v~~~~~~~~~~~l~~~~L~eiP~q~~~y~~~~~~~ 584 (587)
.||-+|++ ..|+++|..++.||.++|..
T Consensus 14 MPFGKyKG-------~~l~dLP~~YL~W~~~kGfP 41 (67)
T PF12843_consen 14 MPFGKYKG-------RPLADLPESYLVWFARKGFP 41 (67)
T ss_pred CCCcccCC-------cCHhhCCHHHHHHHHHcCCC
Confidence 57777873 57899999999999999953
No 355
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=27.43 E-value=4.7e+02 Score=34.38 Aligned_cols=147 Identities=18% Similarity=0.299 Sum_probs=82.4
Q ss_pred eEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCC-CCceeEEeCCCCC
Q 007848 349 ELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPID-GPVSHCFNLNGSN 427 (587)
Q Consensus 349 ~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~-~~~~~~f~l~~~~ 427 (587)
+.++||+||=|.| |+..+-.----..+.-|.+.|....- +.+.+.-||..|-. .+-...|.
T Consensus 4392 ~yqvmisiddsks------------mses~~~~la~etl~lvtkals~le~-g~iav~kfge~~~~lh~fdkqfs----- 4453 (4600)
T COG5271 4392 TYQVMISIDDSKS------------MSESGSTVLALETLALVTKALSLLEV-GQIAVMKFGEQPELLHPFDKQFS----- 4453 (4600)
T ss_pred eeEEEEEeccccc------------ccccCceeeehHHHHHHHHHHHHHhh-ccEEEEecCCChhhhCchhhhhc-----
Confidence 4689999998876 33221111112345556666666654 45999999997411 00000121
Q ss_pred CCCcccCHHHHHHHHHhhhcceeec-CCCChHHHHHHHH---HHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHc
Q 007848 428 SYCEVEGIPGIMMAYTSALHNVNLA-GPTLFGPVISNAA---LIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKA 503 (587)
Q Consensus 428 ~~p~~~g~~~i~~~Y~~~~~~v~~~-gpt~f~~ii~~~~---~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~a 503 (587)
.-.|+ +.+....|- .-|+.-.+....+ .+|... .++....+=+||+||...|-+...+.+.+|
T Consensus 4454 ---~esg~--------~~f~~f~feqs~tnv~~l~~~s~k~f~~a~t~--~h~d~~qleiiisdgicedhdsi~kllrra 4520 (4600)
T COG5271 4454 ---SESGV--------QMFSHFTFEQSNTNVLALADASMKCFNYANTA--SHHDIRQLEIIISDGICEDHDSIRKLLRRA 4520 (4600)
T ss_pred ---chHHH--------HHHHhhchhcccccHHHHHHHHHHHHHHhhhh--cccchheeEEEeecCcccchHHHHHHHHHh
Confidence 00111 111222222 1233222222222 233322 255778888999999999999999999999
Q ss_pred cCCCeEEEEEecCCCCchhhhhcc
Q 007848 504 SDLPLSILIIGVGGADFKEMEILD 527 (587)
Q Consensus 504 s~lPlSiiiVGvG~~~f~~m~~ld 527 (587)
..--+=|++|=+.+-+-.. ..||
T Consensus 4521 ~e~kvmivfvild~v~t~~-sild 4543 (4600)
T COG5271 4521 QEEKVMIVFVILDNVNTQK-SILD 4543 (4600)
T ss_pred hhcceEEEEEEecCCccch-hhhh
Confidence 9888888887765554333 5565
No 356
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=26.92 E-value=81 Score=38.61 Aligned_cols=67 Identities=19% Similarity=0.250 Sum_probs=44.4
Q ss_pred ccCHHHHHHHHHhhhcceeecCCCC-----hHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHc
Q 007848 432 VEGIPGIMMAYTSALHNVNLAGPTL-----FGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKA 503 (587)
Q Consensus 432 ~~g~~~i~~~Y~~~~~~v~~~gpt~-----f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~a 503 (587)
...++.+-..|-+.+++||+.||-. |.-.|.+++.-.-+. ++.-.-|||-||.-+-+..-.+.-..+
T Consensus 2161 ~dSies~A~~yirqirkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe-----~~~~~~lillDGspty~~~Y~~~yr~~ 2232 (2376)
T KOG1202|consen 2161 LDSIESLAAYYIRQIRKVQPEGPYRLAGYSYGACLAFEMASQLQE-----QQSPAPLILLDGSPTYVLAYTQSYRAK 2232 (2376)
T ss_pred cchHHHHHHHHHHHHHhcCCCCCeeeeccchhHHHHHHHHHHHHh-----hcCCCcEEEecCchHHHHHHHHHHHHH
Confidence 4558889999999999999999964 444454443322222 122223999999987776666655544
No 357
>COG5618 Predicted periplasmic lipoprotein [General function prediction only]
Probab=26.18 E-value=59 Score=30.55 Aligned_cols=17 Identities=35% Similarity=0.661 Sum_probs=15.4
Q ss_pred cccceeeeeeCcccCCc
Q 007848 542 ASRDIVQFVPLKDVQNG 558 (587)
Q Consensus 542 ~~rd~vqFv~~~~~~~~ 558 (587)
+.||-..||.|++|+|.
T Consensus 132 aiRDa~~fiqFndFkNQ 148 (206)
T COG5618 132 AIRDALDFIQFNDFKNQ 148 (206)
T ss_pred eeccccceeehhhhhhH
Confidence 67999999999999984
No 358
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=25.56 E-value=2.5e+02 Score=29.33 Aligned_cols=147 Identities=19% Similarity=0.221 Sum_probs=86.0
Q ss_pred ccccCcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCCceeEE
Q 007848 342 DYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGPVSHCF 421 (587)
Q Consensus 342 dyi~~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~~~~~f 421 (587)
.-++-|+==+++|.||+|.+= --.+ -++|..--.++.+...+..|=+.+-+.-.||=.. .++.+.-+=
T Consensus 53 t~~r~GiiRhl~iviD~S~am---------~e~D--f~P~r~a~~~K~le~Fv~eFFdQNPiSQigii~~-k~g~A~~lt 120 (378)
T KOG2807|consen 53 TRIRKGIIRHLYIVIDCSRAM---------EEKD--FRPSRFANVIKYLEGFVPEFFDQNPISQIGIISI-KDGKADRLT 120 (378)
T ss_pred chhhhhhheeEEEEEEhhhhh---------hhcc--CCchHHHHHHHHHHHHHHHHhccCchhheeEEEE-ecchhhHHH
Confidence 445667778899999999852 1111 1467777777777775544433444655666332 344433344
Q ss_pred eCCCCCCCCcccCHHHHHHHHHhhhccee-ecCCCChHHHHHHHHHHHHhhhcc--CCCceEEEEEEeC---CCcCCHHH
Q 007848 422 NLNGSNSYCEVEGIPGIMMAYTSALHNVN-LAGPTLFGPVISNAALIAGQSLAN--HGQKYFVLLIITD---GVVTDLQE 495 (587)
Q Consensus 422 ~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~-~~gpt~f~~ii~~~~~~a~~~~~~--~~~~y~vlliltd---G~i~d~~~ 495 (587)
-|.|| |. -- .++|+... -+|- +-++.|.++|.+.... ..-.--||+|+.- -+..|.-+
T Consensus 121 ~ltgn---p~-----~h----I~aL~~~~~~~g~----fSLqNaLe~a~~~Lk~~p~H~sREVLii~sslsT~DPgdi~~ 184 (378)
T KOG2807|consen 121 DLTGN---PR-----IH----IHALKGLTECSGD----FSLQNALELAREVLKHMPGHVSREVLIIFSSLSTCDPGDIYE 184 (378)
T ss_pred HhcCC---HH-----HH----HHHHhcccccCCC----hHHHHHHHHHHHHhcCCCcccceEEEEEEeeecccCcccHHH
Confidence 55664 32 22 34444444 3343 3467777777765432 2233568888653 46678899
Q ss_pred HHHHHHHccCCCeEEEEEecCCCC
Q 007848 496 TKDALVKASDLPLSILIIGVGGAD 519 (587)
Q Consensus 496 t~~~i~~as~lPlSiiiVGvG~~~ 519 (587)
|++.++.+ + |=+-+||+..+-
T Consensus 185 tI~~lk~~-k--IRvsvIgLsaEv 205 (378)
T KOG2807|consen 185 TIDKLKAY-K--IRVSVIGLSAEV 205 (378)
T ss_pred HHHHHHhh-C--eEEEEEeechhH
Confidence 99999965 3 445567775543
No 359
>smart00187 INB Integrin beta subunits (N-terminal portion of extracellular region). Portion of beta integrins that lies N-terminal to their EGF-like repeats. Integrins are cell adhesion molecules that mediate cell-extracellular matrix and cell-cell interactions. They contain both alpha and beta subunits. Beta integrins are proposed to have a von Willebrand factor type-A "insert" or "I" -like domain (although this remains to be confirmed).
Probab=25.42 E-value=2.3e+02 Score=30.89 Aligned_cols=124 Identities=14% Similarity=0.226 Sum_probs=66.6
Q ss_pred cceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecc---cC--CC-CC----
Q 007848 347 GFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGA---RP--ID-GP---- 416 (587)
Q Consensus 347 g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~---~~--~~-~~---- 416 (587)
..-+.+.+-.|+|.| |..+ ...-......+.+-+..+-.+-++ |||. |+ |. ..
T Consensus 97 ~yPvDLYyLMDlS~S------------M~dd--l~~lk~lg~~L~~~m~~it~n~rl---GfGsFVDK~v~P~~~t~p~~ 159 (423)
T smart00187 97 DYPVDLYYLMDLSYS------------MKDD--LDNLKSLGDDLAREMKGLTSNFRL---GFGSFVDKTVSPFVSTRPEK 159 (423)
T ss_pred cCccceEEEEeCCcc------------HHHH--HHHHHHHHHHHHHHHHhcccCcee---eEEEeecCccCCcccCCHHH
Confidence 446888899999996 4322 333444445555666666655444 9997 22 11 11
Q ss_pred -ceeEEeCCCCCCCCcccCHHHH------HHHHHhhhcceeecCCC-----ChHHHHHHHHHHHHhhhccCCCceEEEEE
Q 007848 417 -VSHCFNLNGSNSYCEVEGIPGI------MMAYTSALHNVNLAGPT-----LFGPVISNAALIAGQSLANHGQKYFVLLI 484 (587)
Q Consensus 417 -~~~~f~l~~~~~~p~~~g~~~i------~~~Y~~~~~~v~~~gpt-----~f~~ii~~~~~~a~~~~~~~~~~y~vlli 484 (587)
...|-..+. .-..-.|+..+ .+.|.+.+.+...+|-. -|.-|++-|+ ..+...++...-.+|++
T Consensus 160 l~~PC~~~~~--~c~p~f~f~~~L~LT~~~~~F~~~V~~~~iSgN~D~PEgG~DAimQaaV--C~~~IGWR~~a~rllv~ 235 (423)
T smart00187 160 LENPCPNYNL--TCEPPYGFKHVLSLTDDTDEFNEEVKKQRISGNLDAPEGGFDAIMQAAV--CTEQIGWREDARRLLVF 235 (423)
T ss_pred hcCCCcCCCC--CcCCCcceeeeccCCCCHHHHHHHHhhceeecCCcCCcccHHHHHHHHh--hccccccCCCceEEEEE
Confidence 011211000 00001133332 35577777777777644 3655555442 22333345677889999
Q ss_pred EeCCCcC
Q 007848 485 ITDGVVT 491 (587)
Q Consensus 485 ltdG~i~ 491 (587)
.||+..+
T Consensus 236 ~TDa~fH 242 (423)
T smart00187 236 STDAGFH 242 (423)
T ss_pred EcCCCcc
Confidence 9998664
No 360
>KOG0906 consensus Phosphatidylinositol 3-kinase VPS34, involved in signal transduction [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=25.19 E-value=86 Score=35.69 Aligned_cols=44 Identities=20% Similarity=0.422 Sum_probs=32.5
Q ss_pred Cceee-ceEEe--eecCCCCCcEEEEEEeccCCCCCceeEEEEEechh
Q 007848 252 PTWKS-VFLNI--QQVGSKDSPLIIECFNFNSNGKHDLIGKVQKSLAD 296 (587)
Q Consensus 252 P~Wne-f~~~~--~~l~~~~~~L~i~V~D~d~~~~dd~IG~~~i~l~~ 296 (587)
-.||| ..+++ ..| ..+..+.|++||++..++-.++|..++.+..
T Consensus 77 ~~wnewLtlpvky~dL-t~~a~l~itiW~~n~~~~~~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 77 INWNEWLTLPVKYSDL-TRNAQLAITIWDVNGPKKAVFVGGTTVSLFG 123 (843)
T ss_pred cchhhhhccccccccc-cccceEEEEEEecCCCceeeeccceEEEeec
Confidence 34999 45554 333 2367899999998887777899999888653
No 361
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=24.55 E-value=3.9e+02 Score=24.99 Aligned_cols=76 Identities=12% Similarity=0.208 Sum_probs=47.1
Q ss_pred CCCCCcEEEEEEEcCCCcee-----e-EEecceecC-----CCCCceee-ceEEeeecCCC-CCcEEEEEEeccCCCCCc
Q 007848 219 FSRNDPFLVISKIVESGTHI-----P-VCKTEVLKN-----ETKPTWKS-VFLNIQQVGSK-DSPLIIECFNFNSNGKHD 285 (587)
Q Consensus 219 ~g~sDPyv~v~~~~~~g~~~-----~-~~kT~vik~-----tlnP~Wne-f~~~~~~l~~~-~~~L~i~V~D~d~~~~dd 285 (587)
+..++-||+..+... ..|. . ...|.+.+. +-.-.|+. |++.+..-... -..|.|+||-.|..+++.
T Consensus 14 f~~~~l~~~y~~~~g-~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~~~~~~~gwP~L~l~V~~~D~~gr~~ 92 (168)
T PF07162_consen 14 FEEDNLYCRYQLVHG-PDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHFKSTNPQGWPQLVLQVYSLDSWGRDR 92 (168)
T ss_pred CCCCCEEEEEEEEeC-CCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEEEeCCCCCCceEEEEEEEEcccCCeE
Confidence 344566888776541 2232 1 344555432 23456885 55554433211 358999999999999999
Q ss_pred eeEEEEEech
Q 007848 286 LIGKVQKSLA 295 (587)
Q Consensus 286 ~IG~~~i~l~ 295 (587)
+.|...+.|-
T Consensus 93 ~~GYG~~~lP 102 (168)
T PF07162_consen 93 VEGYGFCHLP 102 (168)
T ss_pred EeEEeEEEeC
Confidence 9999777764
No 362
>TIGR02493 PFLA pyruvate formate-lyase 1-activating enzyme. An iron-sulfur protein with a radical-SAM domain (pfam04055). A single glycine residue in EC 2.3.1.54, formate C-acetyltransferase (formate-pyruvate lyase), is oxidized to the corresponding radical by transfer of H from its CH2 to AdoMet with concomitant cleavage of the latter. The reaction requires Fe2+. The first stage is reduction of the AdoMet to give methionine and the 5'-deoxyadenosin-5-yl radical, which then abstracts a hydrogen radical from the glycine residue.
Probab=22.95 E-value=3.7e+02 Score=26.15 Aligned_cols=70 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred cceeecC--CCChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHccCCCeEEEEEecCCCCchhhh
Q 007848 447 HNVNLAG--PTLFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIIGVGGADFKEME 524 (587)
Q Consensus 447 ~~v~~~g--pt~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as~lPlSiiiVGvG~~~f~~m~ 524 (587)
..|.|+| |+.-.+.+..+++.+++. . . -+.|.|+|-...+.+..+.+.+. +.++.|++-..+-+..+
T Consensus 67 ~~I~~~GGEPll~~~~~~~li~~~~~~-----g-~-~~~i~TNG~~~~~~~~~~~ll~~----~d~v~isl~~~~~~~~~ 135 (235)
T TIGR02493 67 GGVTFSGGEPLLQPEFLSELFKACKEL-----G-I-HTCLDTSGFLGGCTEAADELLEY----TDLVLLDIKHFNPEKYK 135 (235)
T ss_pred CeEEEeCcccccCHHHHHHHHHHHHHC-----C-C-CEEEEcCCCCCccHHHHHHHHHh----CCEEEEeCCCCCHHHHH
Confidence 3588876 888888887888887752 1 2 24577999654445555666553 34677887544444444
Q ss_pred hcc
Q 007848 525 ILD 527 (587)
Q Consensus 525 ~ld 527 (587)
++.
T Consensus 136 ~~~ 138 (235)
T TIGR02493 136 KLT 138 (235)
T ss_pred HHH
Confidence 443
No 363
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=22.30 E-value=1.7e+02 Score=31.36 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=40.2
Q ss_pred HHHHhhhccCCCceEEEEEEeCCCcC-------CHHHHHHHHHHccCCCeEEEEEecCCC--Cchhhh
Q 007848 466 LIAGQSLANHGQKYFVLLIITDGVVT-------DLQETKDALVKASDLPLSILIIGVGGA--DFKEME 524 (587)
Q Consensus 466 ~~a~~~~~~~~~~y~vlliltdG~i~-------d~~~t~~~i~~as~lPlSiiiVGvG~~--~f~~m~ 524 (587)
++|+... ..-.-=.|.|-++-|+.. ...++++.+.+|+++|| ||.|-|+. |.+.|+
T Consensus 143 ~wak~~V-~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av~vPL--IL~gsg~~~kD~eVLe 207 (389)
T TIGR00381 143 EWARKCV-KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAVDVPI--VIGGSGNPEKDPLVLE 207 (389)
T ss_pred HHHHHHH-HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhCCCCE--EEeCCCCCcCCHHHHH
Confidence 5665543 222334678888888776 67889999999999999 77888875 666663
No 364
>KOG2737 consensus Putative metallopeptidase [General function prediction only]
Probab=21.92 E-value=89 Score=33.27 Aligned_cols=93 Identities=17% Similarity=0.213 Sum_probs=62.8
Q ss_pred eccccCcceEEEEEEeccccCCCCCCCCCCccccCCCCCCCHHHHHHHHHhhhcccccCCCCcceeeecccCCCCC---c
Q 007848 341 LDYLAGGFELNFMVAVDFTASNGNPRLPDSLHYLDPSGRPNAYQRAILEVGEVLQVYDSDKRFPAWGFGARPIDGP---V 417 (587)
Q Consensus 341 ldyi~~g~~~~~~~aiDft~sN~~~~~~~slh~~~~~~~~n~Y~~ai~~i~~~~~~yd~d~~~~~~gFG~~~~~~~---~ 417 (587)
--|-+|||+---.-.|=.|+-|. .-|||=+.. .+|. +.+ .|+-.-+|-.||. +... .
T Consensus 228 h~y~~GGcRh~sYtcIc~sG~ns-----~vLHYgha~-apNd---------~~i----qdgd~cLfDmGae-y~~yaSDI 287 (492)
T KOG2737|consen 228 HSYSYGGCRHLSYTCICASGDNS-----AVLHYGHAG-APND---------RTI----QDGDLCLFDMGAE-YHFYASDI 287 (492)
T ss_pred hhhccCCccccccceeeecCCCc-----ceeeccccC-CCCC---------ccc----CCCCEEEEecCcc-eeeeeccc
Confidence 46788999854444555566553 579996644 5664 112 3455778889998 4433 3
Q ss_pred eeEEeCCCCCCCCcccCHHHHHHHHHhhhcceeecC
Q 007848 418 SHCFNLNGSNSYCEVEGIPGIMMAYTSALHNVNLAG 453 (587)
Q Consensus 418 ~~~f~l~~~~~~p~~~g~~~i~~~Y~~~~~~v~~~g 453 (587)
.-|||-||....-.-.=.+-|+++=...+..++++-
T Consensus 288 TcsFP~nGKFTadqk~VYnaVLda~navm~a~KpGv 323 (492)
T KOG2737|consen 288 TCSFPVNGKFTADQKLVYNAVLDASNAVMEAMKPGV 323 (492)
T ss_pred ceeccCCCccchhHHHHHHHHHHHHHHHHHhcCCCC
Confidence 458999998876655557788888888888888764
No 365
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=20.87 E-value=3.8e+02 Score=27.73 Aligned_cols=87 Identities=24% Similarity=0.318 Sum_probs=54.4
Q ss_pred CcccCHHHHHHHHHhhhcceeec-CCCCh-----HHHHHHHHHHHHhhhccCCCceEEEEEEeCCC-cCCH-----HHHH
Q 007848 430 CEVEGIPGIMMAYTSALHNVNLA-GPTLF-----GPVISNAALIAGQSLANHGQKYFVLLIITDGV-VTDL-----QETK 497 (587)
Q Consensus 430 p~~~g~~~i~~~Y~~~~~~v~~~-gpt~f-----~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~-i~d~-----~~t~ 497 (587)
|.-.|+.+++..-++..+.+++. -|+.+ ++=|-.|++.+.... ....|=|++|.=-|. +.|+ ++..
T Consensus 23 ~~gAa~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~--~~~~~Dviii~RGGGs~eDL~~FN~e~va 100 (319)
T PF02601_consen 23 PTGAAIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMG--QADDFDVIIIIRGGGSIEDLWAFNDEEVA 100 (319)
T ss_pred CchHHHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhcc--ccccccEEEEecCCCChHHhcccChHHHH
Confidence 45567889998888877766543 35443 444555666654321 123566666665553 4555 5677
Q ss_pred HHHHHccCCCeEEEEEecCCC-Cchh
Q 007848 498 DALVKASDLPLSILIIGVGGA-DFKE 522 (587)
Q Consensus 498 ~~i~~as~lPlSiiiVGvG~~-~f~~ 522 (587)
++|. +|.+| ||.|||=+ ||.-
T Consensus 101 rai~-~~~~P---visaIGHe~D~ti 122 (319)
T PF02601_consen 101 RAIA-ASPIP---VISAIGHETDFTI 122 (319)
T ss_pred HHHH-hCCCC---EEEecCCCCCchH
Confidence 7776 55788 89999965 6643
No 366
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.65 E-value=2e+02 Score=31.87 Aligned_cols=89 Identities=21% Similarity=0.252 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHhhhccCCCceEEEEEEeCCCcCCHHHHHHHHHHcc--CCCeEEEEEe---cCCCCchhhhhcccCC
Q 007848 456 LFGPVISNAALIAGQSLANHGQKYFVLLIITDGVVTDLQETKDALVKAS--DLPLSILIIG---VGGADFKEMEILDADK 530 (587)
Q Consensus 456 ~f~~ii~~~~~~a~~~~~~~~~~y~vlliltdG~i~d~~~t~~~i~~as--~lPlSiiiVG---vG~~~f~~m~~ld~d~ 530 (587)
.-+-|-+.|+++|++ +.|-|.||=|-|--+|-+..+.++..-. +-|==|++|| ||++.-+.+.++. +.
T Consensus 450 d~a~vak~AI~~a~~------~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~q~~~fn-~a 522 (587)
T KOG0781|consen 450 DAAGVAKEAIQEARN------QGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFN-RA 522 (587)
T ss_pred ChHHHHHHHHHHHHh------cCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHHHHHHHH-HH
Confidence 356677888888886 5799999999999999887777766554 5788899999 8999888777776 22
Q ss_pred CcccccCCCCccccceeeeeeCcccCCc
Q 007848 531 GERLESSTGRVASRDIVQFVPLKDVQNG 558 (587)
Q Consensus 531 ~~~l~~~~g~~~~rd~vqFv~~~~~~~~ 558 (587)
|.+.. .. -+..++-+.+|...
T Consensus 523 ---l~~~~---~~-r~id~~~ltk~dtv 543 (587)
T KOG0781|consen 523 ---LADHS---TP-RLIDGILLTKFDTV 543 (587)
T ss_pred ---HhcCC---Cc-cccceEEEEeccch
Confidence 32211 11 14556666666543
Done!