BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007849
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH A+ Y + K++ +L ADVN ++ GY+ LH A + ++ LL GA +++
Sbjct: 315 LHVASHYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV 373
Query: 361 TLDGRSAVSICRRL 374
+ DG + ++I +RL
Sbjct: 374 SSDGTTPLAIAKRL 387
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR 373
A+ NL ++ G+T LHI A +++LL K A + +T G + + + +
Sbjct: 104 ANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 155
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LHYAA +++ ++S G ADVN + S G T LH A ++ L++KGA
Sbjct: 69 DGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 127
Query: 356 CASDLTLDGRSAVSICR 372
+ DGR+ + + R
Sbjct: 128 DVNTSDSDGRTPLDLAR 144
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LHYAA +++ ++S G ADVN + S G T LH A ++ L++KGA
Sbjct: 36 DGRTPLHYAAKEGHKEIVKLLISKG-ADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGA 94
Query: 356 CASDLTLDGRS 366
+ DGR+
Sbjct: 95 DVNAKDSDGRT 105
Score = 30.4 bits (67), Expect = 2.6, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 23/45 (51%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRS 366
ADVN S G T LH A ++ L++KGA + DGR+
Sbjct: 28 ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRT 72
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D ALH+A + +++ +L LG+ VN + G++ LHI A ++ +LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLVKGA 97
Query: 356 CASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKDRICIDVLEGEMRRNPMAGDAFI 415
+ + +G P Y A N+ I + +LEG NP A D +
Sbjct: 98 HVNAVNQNG----------CTPLHYAAS------KNRHEIAVMLLEG--GANPDAKDHYD 139
Query: 416 TS--HTLSDDLHMKLLYLENRVAFARLLFPTEAKLAMDIANTETTSEFSGFCASKGSS 471
+ H + ++K++++ + + TE + +A E E + F ++G+S
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 21/178 (11%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D ALH+A + +++ +L LG+ VN + G++ LHI A ++ +LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGXDEIVKALLVKGA 97
Query: 356 CASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKDRICIDVLEGEMRRNPMAGDAFI 415
+ + +G P Y A N+ I + +LEG NP A D +
Sbjct: 98 HVNAVNQNG----------CTPLHYAAS------KNRHEIAVMLLEG--GANPDAKDHYD 139
Query: 416 TS--HTLSDDLHMKLLYLENRVAFARLLFPTEAKLAMDIANTETTSEFSGFCASKGSS 471
+ H + ++K++++ + + TE + +A E E + F ++G+S
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS 197
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D ALH+A + +++ +L LG+ VN + G++ LHI A ++ +LL KGA
Sbjct: 39 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 97
Query: 356 CASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKDRICIDVLEGEMRRNPMAGDAFI 415
+ + +G P Y A N+ I + +LEG NP A D +
Sbjct: 98 QVNAVNQNG----------CTPLHYAAS------KNRHEIAVMLLEG--GANPDAKDHYE 139
Query: 416 TS--HTLSDDLHMKLLYLENRVAFARLLFPTEAKLAMDIANTETTSEFSGFCASKGSS 471
+ H + ++K++++ + + TE + +A E E + S+G+S
Sbjct: 140 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 197
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LHYAA +++ +LS G AD N + S G T LH A ++ LL+KGA
Sbjct: 69 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 127
Query: 356 CASDLTLDGRSAVSICR 372
+ DGR+ + + R
Sbjct: 128 DPNTSDSDGRTPLDLAR 144
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LHYAA +++ +LS G AD N + S G T LH A ++ LL+KGA
Sbjct: 36 DGRTPLHYAAENGHKEIVKLLLSKG-ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGA 94
Query: 356 CASDLTLDGRS 366
+ DGR+
Sbjct: 95 DPNAKDSDGRT 105
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 78/178 (43%), Gaps = 21/178 (11%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D ALH+A + +++ +L LG+ VN + G++ LHI A ++ +LL KGA
Sbjct: 40 DSRTALHWACSAGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASAGRDEIVKALLGKGA 98
Query: 356 CASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKDRICIDVLEGEMRRNPMAGDAFI 415
+ + +G P Y A N+ I + +LEG NP A D +
Sbjct: 99 QVNAVNQNG----------CTPLHYAAS------KNRHEIAVMLLEG--GANPDAKDHYE 140
Query: 416 TS--HTLSDDLHMKLLYLENRVAFARLLFPTEAKLAMDIANTETTSEFSGFCASKGSS 471
+ H + ++K++++ + + TE + +A E E + S+G+S
Sbjct: 141 ATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 198
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH+AA +V+ ++S G ADVN + S G T LH A V+ L++KGA
Sbjct: 69 DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 127
Query: 356 CASDLTLDGRSAVSICR 372
+ DGR+ + + R
Sbjct: 128 DVNTSDSDGRTPLDLAR 144
Score = 37.4 bits (85), Expect = 0.021, Method: Composition-based stats.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH+AA +V+ ++S G ADVN + S G T LH A V+ L++KGA
Sbjct: 36 DGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGA 94
Query: 356 CASDLTLDGRS 366
+ DGR+
Sbjct: 95 DVNAKDSDGRT 105
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 23/45 (51%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRS 366
ADVN S G T LH A V+ L++KGA + DGR+
Sbjct: 28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRT 72
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 26/78 (33%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA + + ++LS G ADVN RS G T LH+ A ++ LL KGA
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 356 CASDLTLDGRSAVSICRR 373
+ + DG + + ++
Sbjct: 67 DVNARSKDGNTPEHLAKK 84
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 38.9 bits (89), Expect = 0.007, Method: Composition-based stats.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 1/77 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +V+ +LS G AD N + S G T LH+ A V+ LL++GA
Sbjct: 69 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 127
Query: 356 CASDLTLDGRSAVSICR 372
+ DGR+ + + R
Sbjct: 128 DPNTSDSDGRTPLDLAR 144
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 28/96 (29%), Positives = 44/96 (45%), Gaps = 1/96 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +V+ +LS G AD N + S G T LH+ A V+ LL++GA
Sbjct: 36 DGKTPLHLAAENGHKEVVKLLLSQG-ADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGA 94
Query: 356 CASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391
+ DG++ + + + + QG + N
Sbjct: 95 DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPN 130
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR-------- 373
ADVN S G T LH+ A V+ LL++GA + DG++ + +
Sbjct: 28 ADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 374 --LTRPKDYQAKTEQGK 388
L++ D AK GK
Sbjct: 88 LLLSQGADPNAKDSDGK 104
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 63 YSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122
Y D ++V+G HR +LAA S +F +LF + +V + LP V +
Sbjct: 33 YCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRSAVVE-----------LP-AAVQPQ 80
Query: 123 AFLIFLSYTYSGKL 136
+F LS+ Y+G+L
Sbjct: 81 SFQQILSFCYTGRL 94
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.4 bits (80), Expect = 0.093, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 298 ANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
+ LH AA P+++ +L G ADVN R + G+T LH+ A ++ LL GA
Sbjct: 48 STPLHLAAWIGHPEIVEVLLKHG-ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGA 104
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +++ +L G ADVN + + G T LH+ A R ++ LL GA
Sbjct: 79 DGWTPLHLAADNGHLEIVEVLLKYG-ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGA 137
Query: 356 CASDLTLDGRSAVSI 370
+ G++A I
Sbjct: 138 DVNAQDKFGKTAFDI 152
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDG 364
ADVN +G T LH+ A P ++ LL GA + DG
Sbjct: 38 ADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDG 80
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +++ +L G ADVN S G+T LH+ A R ++ LL GA +
Sbjct: 84 LHLAARRGHLEIVEVLLKNG-ADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQ 142
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 143 DKFGKTAFDI 152
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA + +++ +L G ADVN + S G T LH+ A R ++ LL GA
Sbjct: 51 LHLAAHFGHLEIVEVLLKNG-ADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGA 104
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 50/116 (43%), Gaps = 16/116 (13%)
Query: 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVD 101
V S N L S +Q D C D ++VEG HR +LAA S +F+ R G D
Sbjct: 18 VHSTNVLLSLNDQRKKDVLC---DVTVLVEGQRFRAHRSVLAACSSYFH---SRIVGQTD 71
Query: 102 KEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKL---KPFPMEVSTCVDNICVHD 154
E P +V + F + + Y+ KL K EV CV+ + VH+
Sbjct: 72 AELTVTLP-------EEVTVKGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHN 120
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +++ +L G ADVN + GYT LH+ A ++ LL GA
Sbjct: 46 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 356 CASDLTLDGRSAVSICRR 373
+ DG + + + R
Sbjct: 105 DVNAKDKDGYTPLHLAAR 122
Score = 33.1 bits (74), Expect = 0.41, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +++ +L G ADVN + GYT LH+ A ++ LL GA
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 356 CASDLTLDGRSAVSI 370
+ G++A I
Sbjct: 138 DVNAQDKFGKTAFDI 152
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR 373
ADVN + GYT LH+ A ++ LL GA + DG + + + R
Sbjct: 38 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 89
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 49/116 (42%), Gaps = 16/116 (13%)
Query: 42 VFSLNKLSSSLEQLLIDSTCEYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVD 101
V S N L S +Q D C D I VEG HR +LAA S +F+ R G D
Sbjct: 11 VHSTNVLLSLNDQRKKDVLC---DVTIFVEGQRFRAHRSVLAACSSYFH---SRIVGQAD 64
Query: 102 KEGKPKYPMSELLPYGKVGYEAFLIFLSYTYSGKL---KPFPMEVSTCVDNICVHD 154
E P +V + F + + Y+ KL K EV CV+ + VH+
Sbjct: 65 GELNITLP-------EEVTVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHN 113
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +++ +L G ADVN + GYT LH+ A ++ LL GA
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 356 CASDLTLDGRSAVSICRR 373
+ DG + + + R
Sbjct: 93 DVNAKDKDGYTPLHLAAR 110
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR 373
ADVN + GYT LH+ A ++ LL GA + DG + + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +++ +L G ADVN + GYT LH+ A ++ LL GA
Sbjct: 34 DGYTPLHLAAREGHLEIVEVLLKAG-ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 356 CASDLTLDGRSAVSICRR 373
+ DG + + + R
Sbjct: 93 DVNAKDKDGYTPLHLAAR 110
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRR 373
ADVN + GYT LH+ A ++ LL GA + DG + + + R
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAR 77
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 299 NALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHI 337
ALH AA Y P+V+ ++ LG AD+ + RG T L +
Sbjct: 113 TALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALEL 150
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 2/95 (2%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +V+ +L G ADVN + G T LH+ A V+ LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 361 TLDGRSAVSICRRLTRPKDYQAKTEQGKETN-KDR 394
+GR+ + + R + + E G + N KD+
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99
Score = 33.1 bits (74), Expect = 0.48, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +V+ +L G ADVN + G T LH+ A V+ LL GA +
Sbjct: 39 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 97
Query: 361 TLDGRSAVSICRR 373
+GR+ + + R
Sbjct: 98 DKNGRTPLHLAAR 110
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA +V+ +L G ADVN + G T LH+ A V+ LL GA
Sbjct: 72 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 300 ALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIG 338
ALH AA Y P+V+ ++ LG AD+ + RG T L +
Sbjct: 113 ALHMAAGYVRPEVVEALVELG-ADIEVEDERGLTALELA 150
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 322 ADVNLRSSRG-YTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDY 380
AD++ R RG T LH+ A P V+ +L+ GA G +A+ + R + +
Sbjct: 100 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 159
Query: 381 QAKTEQGKETNKDRICIDVLEGEM 404
+ G+ +++ I+VLEG++
Sbjct: 160 GNPMQFGRRIGLEKV-INVLEGQV 182
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA +++ +L G ADVN + G T LH+ A+R ++ LL GA
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLLKYG-ADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 356 CASDLTLDGRSAVSI 370
+ G++A I
Sbjct: 105 DVNAQDKFGKTAFDI 119
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 298 ANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACA 357
+ LH AA + +++ +L G ADVN + G T LH+ A R ++ LL GA
Sbjct: 81 STPLHLAAHFGHLEIVEVLLKNG-ADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADV 139
Query: 358 SDLTLDGRSAVSI 370
+ G++A I
Sbjct: 140 NAQDKFGKTAFDI 152
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +V+ +L G ADVN + G T LH+ A V+ LL GA +
Sbjct: 6 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64
Query: 361 TLDGRSAVSICRR 373
+GR+ + + R
Sbjct: 65 DKNGRTPLHLAAR 77
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA +V+ +L G ADVN + G T LH+ A V+ LL GA
Sbjct: 39 LHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA + +++ +L G ADVN S G T LH+ A R V+ LL GA
Sbjct: 51 LHLAAYFGHLEIVEVLLKNG-ADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGA 104
Score = 29.3 bits (64), Expect = 5.9, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +V+ +L G ADVN G+T LH+ A ++ LL GA +
Sbjct: 84 LHLAADRGHLEVVEVLLKNG-ADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQ 142
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 143 DKFGKTAFDI 152
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 300 ALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASD 359
ALH A + ++ +++ G A+VN S G+T LH A + + ++L+ GA
Sbjct: 57 ALHNAICGANYSIVDFLITAG-ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115
Query: 360 LTL-DGRSAVSIC 371
TL DG +A C
Sbjct: 116 TTLSDGATAFEKC 128
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 63 YSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122
++D + V G H+ ILAARS F +F+ E +++ K + ++++ P E
Sbjct: 25 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHE---MEESKKNRVEINDVEP------E 75
Query: 123 AFLIFLSYTYSGK 135
F + + Y+GK
Sbjct: 76 VFKEMMCFIYTGK 88
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA Y +++ +L G ADVN + G+T LH+ A ++ LL GA +
Sbjct: 84 LHLAALYGHLEIVEVLLKNG-ADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ 142
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 143 DKFGKTAFDI 152
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 63 YSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYE 122
++D + V G H+ ILAARS F +F+ E +++ K + ++++ P E
Sbjct: 174 FTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHE---MEESKKNRVEINDVEP------E 224
Query: 123 AFLIFLSYTYSGK 135
F + + Y+GK
Sbjct: 225 VFKEMMCFIYTGK 237
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 32.0 bits (71), Expect = 0.91, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA Y +++ +L G ADVN + G T LH+ A+ ++ LL GA +
Sbjct: 51 LHLAADYDHLEIVEVLLKHG-ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVNAQ 109
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 110 DKFGKTAFDI 119
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA--CASDLT 361
ADVN + GYT LH+ A ++ LL GA ASDLT
Sbjct: 38 ADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT 79
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AAA +++ +L G ADVN + G+T LH+ A ++ LL GA +
Sbjct: 84 LHLAAATGHLEIVEVLLKHG-ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQ 142
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 143 DKFGKTAFDI 152
Score = 29.6 bits (65), Expect = 4.3, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)
Query: 296 DEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
D LH AA+ +++ EVL ADVN G T LH+ A ++ LL GA
Sbjct: 46 DGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 356 CASDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETN 391
+ DG + + + + + + + G + N
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVN 140
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 298 ANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACA 357
A LH AA +++ +L G ADVN + G+T LH+ A ++ LL GA
Sbjct: 81 ATPLHLAADNGHLEIVEVLLKHG-ADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADV 139
Query: 358 SDLTLDGRSAVSI 370
+ G++A I
Sbjct: 140 NAQDKFGKTAFDI 152
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +++ +L G ADVN +GYT LH+ A ++ LL GA +
Sbjct: 84 LHLAAYRGHLEIVEVLLKYG-ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 143 DKFGKTAFDI 152
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 315 EVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSI 370
EVL ADVN G+T LH+ A R ++ LL GA + + G + + +
Sbjct: 64 EVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHL 119
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AAA +++ +L G ADVN S G T LH+ A ++ LL GA
Sbjct: 43 LHLAAANGQLEIVEVLLKNG-ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGA 96
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 303 YAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
+ AAY + EVL ADVN G+T LH+ A+ + ++ LL GA
Sbjct: 77 HLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGA 129
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 27/56 (48%)
Query: 315 EVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSI 370
EVL ADVN G+T LH+ AM ++ LL GA + G++A I
Sbjct: 97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.4 bits (67), Expect = 2.8, Method: Composition-based stats.
Identities = 21/71 (29%), Positives = 33/71 (46%)
Query: 303 YAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTL 362
+ AAY + EVL ADV+ GYT LH+ A ++ LL GA + +
Sbjct: 52 HLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDS 111
Query: 363 DGRSAVSICRR 373
DG + + + +
Sbjct: 112 DGMTPLHLAAK 122
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA + +++ +L G ADVN S G T LH+ A ++ LL GA +
Sbjct: 84 LHLAAYWGHLEIVEVLLKNG-ADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ 142
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 143 DKFGKTAFDI 152
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 57/131 (43%), Gaps = 8/131 (6%)
Query: 299 NALHYAAAYCDPKVLSEVLSLGL---ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
NAL +A D + + L L ADVN+R RG T L + +K ++ LL +
Sbjct: 204 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 263
Query: 356 CA-SDLTLDGRSAVSICRRLTRPKDYQAKTEQGKETNKDRICIDVLEGEMRRNPMAGDAF 414
+D DG++A+ + L K + ++G T+ C D++ R +
Sbjct: 264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD----CGDLVMTARRNYDHSLVKV 319
Query: 415 ITSHTLSDDLH 425
+ SH +D H
Sbjct: 320 LLSHGAKEDFH 330
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA Y +++ +L G ADVN G T LH+ A+ ++ LL GA
Sbjct: 51 LHLAATYGHLEIVEVLLKHG-ADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGA 104
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
Query: 293 ITLDEANALHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLT 352
I + + LH AA +++ +L G ADVN + G T LH+ A+ ++ LL
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHG-ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 353 KGACASDLTLDGRSAVSI 370
GA + G++A I
Sbjct: 135 HGADVNAQDKFGKTAFDI 152
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA Y +++ +L G ADVN G T LH+ A+ ++ LL GA
Sbjct: 51 LHLAATYGHLEIVEVLLKHG-ADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGA 104
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +++ +L G ADV+ G+T LH+ AM ++ LL GA +
Sbjct: 51 LHLAAVSGHLEIVEVLLKHG-ADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF 109
Query: 361 TLDGRSAVSI 370
+ G + + +
Sbjct: 110 DMTGSTPLHL 119
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSS-RGYTVLHIGAMRKEPSVIVSLLTKGACASD 359
LH A+ + ++ ++SLG ADVN + G T LH+ + P ++ LL GA +
Sbjct: 121 LHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179
Query: 360 LTLDGRS 366
+T G S
Sbjct: 180 VTYQGYS 186
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 65 DAEIIVEGIPVCVHRCILAARSKFFYELF 93
D I+VEG HR +LAA S++F +LF
Sbjct: 37 DVVILVEGREFPTHRSVLAACSQYFKKLF 65
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 65 DAEIIVEGIPVCVHRCILAARSKFFYELF 93
D I+VEG HR +LAA S++F +LF
Sbjct: 27 DVVILVEGREFPTHRSVLAACSQYFKKLF 55
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 29.6 bits (65), Expect = 4.9, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSI 370
ADVN + GYT LH+ A ++ LL GA + G++A I
Sbjct: 26 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 74
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQ 381
ADVN G T LH+ A R ++ LL GA + + GR+ + + + + +
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVGHLEIVE 97
Query: 382 AKTEQGKETN 391
E G + N
Sbjct: 98 VLLEYGADVN 107
Score = 28.9 bits (63), Expect = 7.7, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 295 LDEANA--LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLT 352
+D+A LH AA +++ +L G ADVN R G T LH+ A ++ LL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 353 KGACASDLTLDGRSAVSI 370
GA + G++A I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 322 ADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSICRRLTRPKDYQ 381
ADVN G T LH+ A R ++ LL GA + + GR+ + + + + +
Sbjct: 38 ADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVGHLEIVE 97
Query: 382 AKTEQGKETN 391
E G + N
Sbjct: 98 VLLEYGADVN 107
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSS-RGYTVLHIGAMRKEPSVIVSLLTKGACASD 359
LH A+ + ++ ++SLG ADVN + G T LH+ + P ++ LL GA +
Sbjct: 118 LHLASIHGYLGIVELLVSLG-ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 176
Query: 360 LTLDGRS 366
+T G S
Sbjct: 177 VTYQGYS 183
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA+ +++ +L G ADVN + + G T L++ A ++ LL GA +
Sbjct: 72 LHLAASLGHLEIVEVLLKYG-ADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQ 130
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 131 DKFGKTAFDI 140
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AAA +++ EVL ADVN + G T LH+ A ++ LL GA
Sbjct: 39 LHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 29.3 bits (64), Expect = 6.3, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 32/75 (42%), Gaps = 13/75 (17%)
Query: 62 EYSDAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGY 121
+Y DA + V G+ H +LA S FF L+ G S +LP G
Sbjct: 23 QYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGDGSGG-----------SVVLPAGFA-- 69
Query: 122 EAFLIFLSYTYSGKL 136
E F + L + Y+G L
Sbjct: 70 EIFGLLLDFFYTGHL 84
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 316 VLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDLTLDGRSAVSI 370
+L+ ADVN G+T LH+ AM ++ LL GA + GR+ + +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHL 86
Score = 28.5 bits (62), Expect = 9.7, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGACASDL 360
LH AA +++ EVL ADVN + G T LH+ A ++ LL GA +
Sbjct: 51 LHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVNAQ 109
Query: 361 TLDGRSAVSI 370
G++A I
Sbjct: 110 DKFGKTAFDI 119
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 301 LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLTKGA 355
LH AA +V+ +LS G DVN + G+T + K ++ LL+KG+
Sbjct: 81 LHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 28.9 bits (63), Expect = 7.8, Method: Composition-based stats.
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 295 LDEANA--LHYAAAYCDPKVLSEVLSLGLADVNLRSSRGYTVLHIGAMRKEPSVIVSLLT 352
+D+A LH AA +++ +L G ADVN S G T LH+ A ++ LL
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIVEVLLKHG-ADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 353 KGACASDLTLDGRSAVSI 370
GA + G++A I
Sbjct: 102 YGADVNAQDKFGKTAFDI 119
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 14/79 (17%)
Query: 65 DAEIIVEGIPVCVHRCILAARSKFFYELFKREKGSVDKEGKPKYPMSELLPYGKVGYEAF 124
D +V+G+ H+ +LAA S++F LF VD++ +S G+V
Sbjct: 29 DCTFVVDGVHFKAHKAVLAACSEYFKMLF------VDQKDVVHLDISNAAGLGQV----- 77
Query: 125 LIFLSYTYSGKLKPFPMEV 143
L + Y+ KL P V
Sbjct: 78 ---LEFMYTAKLSLSPENV 93
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,366,269
Number of Sequences: 62578
Number of extensions: 547095
Number of successful extensions: 1406
Number of sequences better than 100.0: 63
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 128
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)