Query 007850
Match_columns 587
No_of_seqs 452 out of 4004
Neff 10.0
Searched_HMMs 46136
Date Thu Mar 28 16:10:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007850.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007850hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 2.5E-73 5.5E-78 562.1 41.8 447 91-543 23-474 (493)
2 PTZ00102 disulphide isomerase; 100.0 3.1E-59 6.7E-64 493.7 51.3 429 94-545 33-468 (477)
3 TIGR01130 ER_PDI_fam protein d 100.0 7.8E-59 1.7E-63 490.0 48.7 445 94-548 2-460 (462)
4 KOG0912 Thiol-disulfide isomer 100.0 1.9E-36 4.1E-41 273.0 22.3 320 98-429 1-333 (375)
5 PF01216 Calsequestrin: Calseq 100.0 2.5E-28 5.4E-33 225.9 31.2 321 93-421 34-374 (383)
6 KOG4277 Uncharacterized conser 100.0 4.8E-30 1E-34 230.8 19.2 297 109-419 42-355 (468)
7 cd03006 PDI_a_EFP1_N PDIa fami 99.9 7E-22 1.5E-26 161.7 12.5 100 93-195 9-113 (113)
8 KOG0191 Thioredoxin/protein di 99.9 1E-20 2.2E-25 192.3 21.3 310 102-519 39-357 (383)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 5.1E-21 1.1E-25 156.1 12.3 98 94-194 2-100 (101)
10 cd02996 PDI_a_ERp44 PDIa famil 99.8 3.1E-20 6.6E-25 153.4 13.1 102 94-195 2-108 (108)
11 cd03065 PDI_b_Calsequestrin_N 99.8 8.7E-20 1.9E-24 150.1 13.4 104 93-199 9-119 (120)
12 KOG0910 Thioredoxin-like prote 99.8 3.7E-20 8E-25 153.2 11.1 104 94-200 44-149 (150)
13 PF00085 Thioredoxin: Thioredo 99.8 2E-19 4.2E-24 147.8 14.8 101 95-198 1-103 (103)
14 cd02994 PDI_a_TMX PDIa family, 99.8 1.1E-19 2.3E-24 148.4 12.9 100 94-197 2-101 (101)
15 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 1.1E-19 2.4E-24 149.1 12.2 99 94-195 2-104 (104)
16 PF13848 Thioredoxin_6: Thiore 99.8 3.9E-19 8.5E-24 162.8 15.8 179 227-413 1-184 (184)
17 PTZ00443 Thioredoxin domain-co 99.8 9.4E-19 2E-23 160.6 16.3 104 93-199 30-139 (224)
18 cd03005 PDI_a_ERp46 PDIa famil 99.8 5.2E-19 1.1E-23 144.9 13.0 101 94-195 1-102 (102)
19 COG3118 Thioredoxin domain-con 99.8 5.9E-19 1.3E-23 162.2 12.1 105 94-201 24-132 (304)
20 cd02999 PDI_a_ERp44_like PDIa 99.8 7E-19 1.5E-23 142.1 10.8 84 108-195 16-100 (100)
21 cd02963 TRX_DnaJ TRX domain, D 99.8 1.7E-18 3.7E-23 143.1 12.5 99 97-197 8-110 (111)
22 PHA02278 thioredoxin-like prot 99.8 2.4E-18 5.3E-23 138.4 12.5 92 100-194 4-100 (103)
23 cd03002 PDI_a_MPD1_like PDI fa 99.8 2.1E-18 4.5E-23 143.1 12.1 98 95-195 2-108 (109)
24 PRK10996 thioredoxin 2; Provis 99.8 6.7E-18 1.5E-22 145.2 15.1 105 92-199 34-139 (139)
25 cd02954 DIM1 Dim1 family; Dim1 99.8 2E-18 4.4E-23 139.3 11.0 89 100-191 2-93 (114)
26 PRK09381 trxA thioredoxin; Pro 99.8 5.9E-18 1.3E-22 140.1 14.0 104 93-199 3-108 (109)
27 cd03006 PDI_a_EFP1_N PDIa fami 99.8 3.2E-18 6.9E-23 140.1 11.4 101 433-538 8-113 (113)
28 KOG0910 Thioredoxin-like prote 99.8 8.5E-19 1.8E-23 145.2 7.8 105 434-543 43-149 (150)
29 cd02997 PDI_a_PDIR PDIa family 99.8 5.4E-18 1.2E-22 139.4 12.7 100 95-195 2-104 (104)
30 cd03001 PDI_a_P5 PDIa family, 99.8 6.3E-18 1.4E-22 138.6 12.6 99 94-195 1-102 (103)
31 cd03000 PDI_a_TMX3 PDIa family 99.8 6E-18 1.3E-22 138.6 12.3 97 101-198 7-103 (104)
32 cd02956 ybbN ybbN protein fami 99.8 8E-18 1.7E-22 135.9 12.6 91 102-195 2-95 (96)
33 cd02993 PDI_a_APS_reductase PD 99.8 5.8E-18 1.3E-22 139.7 11.9 100 94-195 2-109 (109)
34 cd03007 PDI_a_ERp29_N PDIa fam 99.8 4.1E-18 8.8E-23 138.1 10.6 98 94-198 2-115 (116)
35 cd02985 TRX_CDSP32 TRX family, 99.8 9.8E-18 2.1E-22 136.6 13.0 94 99-197 2-101 (103)
36 cd02948 TRX_NDPK TRX domain, T 99.8 1.2E-17 2.7E-22 135.8 13.2 96 98-197 5-101 (102)
37 TIGR01126 pdi_dom protein disu 99.8 1E-17 2.2E-22 137.2 12.2 100 98-198 1-101 (102)
38 PF00085 Thioredoxin: Thioredo 99.7 1.2E-17 2.6E-22 137.0 10.9 101 436-541 1-103 (103)
39 cd02962 TMX2 TMX2 family; comp 99.7 5.4E-17 1.2E-21 139.8 14.6 90 93-184 28-126 (152)
40 cd03003 PDI_a_ERdj5_N PDIa fam 99.7 1.9E-17 4.2E-22 134.9 10.7 97 435-537 2-100 (101)
41 KOG0191 Thioredoxin/protein di 99.7 2E-16 4.3E-21 161.0 20.0 204 324-545 47-255 (383)
42 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.3E-17 7.1E-22 134.7 11.0 103 435-538 1-104 (104)
43 cd02965 HyaE HyaE family; HyaE 99.7 5E-17 1.1E-21 130.2 11.4 96 94-192 11-109 (111)
44 cd03004 PDI_a_ERdj5_C PDIa fam 99.7 2.3E-17 5E-22 135.4 9.6 100 435-538 2-104 (104)
45 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 5.5E-17 1.2E-21 133.4 11.5 100 94-195 1-104 (104)
46 cd02998 PDI_a_ERp38 PDIa famil 99.7 4.8E-17 1E-21 134.0 11.2 100 95-195 2-105 (105)
47 cd02996 PDI_a_ERp44 PDIa famil 99.7 5.1E-17 1.1E-21 134.1 10.2 101 435-538 2-108 (108)
48 cd02961 PDI_a_family Protein D 99.7 1.2E-16 2.6E-21 130.5 10.4 98 97-195 2-101 (101)
49 TIGR01068 thioredoxin thioredo 99.7 4E-16 8.6E-21 127.5 13.2 99 98-199 1-101 (101)
50 cd02992 PDI_a_QSOX PDIa family 99.7 3.5E-16 7.6E-21 129.6 12.7 99 94-192 2-109 (114)
51 cd03065 PDI_b_Calsequestrin_N 99.7 1.4E-16 3.1E-21 131.1 10.0 104 434-541 9-118 (120)
52 cd02957 Phd_like Phosducin (Ph 99.7 3.7E-16 7.9E-21 129.8 12.5 88 93-185 4-95 (113)
53 cd02950 TxlA TRX-like protein 99.7 4.7E-16 1E-20 134.1 13.1 98 100-200 10-111 (142)
54 cd02953 DsbDgamma DsbD gamma f 99.7 2.6E-16 5.6E-21 129.0 10.5 92 101-195 2-103 (104)
55 PRK09381 trxA thioredoxin; Pro 99.7 3.5E-16 7.5E-21 129.5 10.8 104 434-542 3-108 (109)
56 KOG0907 Thioredoxin [Posttrans 99.7 4.1E-16 8.8E-21 125.3 10.7 84 109-197 20-104 (106)
57 PLN00410 U5 snRNP protein, DIM 99.7 9.1E-16 2E-20 129.0 13.1 98 99-199 10-120 (142)
58 cd03002 PDI_a_MPD1_like PDI fa 99.7 3E-16 6.4E-21 130.1 10.2 102 436-539 2-109 (109)
59 PHA02278 thioredoxin-like prot 99.7 1.7E-16 3.6E-21 127.8 7.7 91 441-537 4-100 (103)
60 cd02989 Phd_like_TxnDC9 Phosdu 99.7 9E-16 1.9E-20 126.7 11.9 89 93-185 4-94 (113)
61 cd02984 TRX_PICOT TRX domain, 99.7 1.2E-15 2.6E-20 123.5 12.2 92 100-195 2-96 (97)
62 cd02994 PDI_a_TMX PDIa family, 99.7 7.5E-16 1.6E-20 125.6 10.4 98 435-540 2-101 (101)
63 cd02963 TRX_DnaJ TRX domain, D 99.7 3.7E-16 8.1E-21 129.1 8.6 100 437-540 7-110 (111)
64 TIGR00424 APS_reduc 5'-adenyly 99.7 1.1E-15 2.4E-20 154.4 13.7 106 91-198 349-462 (463)
65 cd02993 PDI_a_APS_reductase PD 99.7 7.7E-16 1.7E-20 127.0 10.4 101 435-538 2-109 (109)
66 cd03005 PDI_a_ERp46 PDIa famil 99.6 7.4E-16 1.6E-20 126.1 9.7 98 436-538 2-102 (102)
67 cd02956 ybbN ybbN protein fami 99.6 8.2E-16 1.8E-20 124.1 9.8 93 442-539 1-96 (96)
68 PLN02309 5'-adenylylsulfate re 99.6 1.8E-15 3.9E-20 152.8 13.9 106 91-198 343-456 (457)
69 PTZ00051 thioredoxin; Provisio 99.6 2E-15 4.4E-20 122.3 11.6 89 99-192 7-96 (98)
70 cd02999 PDI_a_ERp44_like PDIa 99.6 5.5E-16 1.2E-20 125.1 8.0 89 443-538 8-100 (100)
71 COG3118 Thioredoxin domain-con 99.6 5.8E-16 1.3E-20 142.6 9.1 106 434-544 23-132 (304)
72 cd02998 PDI_a_ERp38 PDIa famil 99.6 1.6E-15 3.5E-20 124.8 10.9 101 436-538 2-105 (105)
73 cd02949 TRX_NTR TRX domain, no 99.6 3.2E-15 6.9E-20 120.6 12.2 88 106-196 9-97 (97)
74 cd03001 PDI_a_P5 PDIa family, 99.6 1.2E-15 2.6E-20 125.0 9.8 99 436-538 2-102 (103)
75 TIGR02187 GlrX_arch Glutaredox 99.6 2.4E-14 5.3E-19 133.4 19.6 182 110-302 19-214 (215)
76 cd02954 DIM1 Dim1 family; Dim1 99.6 4.3E-16 9.4E-21 125.8 6.8 78 441-520 2-82 (114)
77 cd02986 DLP Dim1 family, Dim1- 99.6 4.1E-15 9E-20 118.8 11.2 77 101-180 3-81 (114)
78 PTZ00443 Thioredoxin domain-co 99.6 2E-15 4.2E-20 138.7 10.4 108 434-546 30-143 (224)
79 cd02985 TRX_CDSP32 TRX family, 99.6 2.1E-15 4.5E-20 122.9 9.2 94 441-541 3-102 (103)
80 TIGR01126 pdi_dom protein disu 99.6 3.1E-15 6.7E-20 122.4 10.1 100 439-542 1-102 (102)
81 cd03007 PDI_a_ERp29_N PDIa fam 99.6 3.2E-15 6.9E-20 121.2 9.0 99 435-541 2-115 (116)
82 cd02997 PDI_a_PDIR PDIa family 99.6 4.9E-15 1.1E-19 121.7 10.1 99 436-538 2-104 (104)
83 cd02948 TRX_NDPK TRX domain, T 99.6 4E-15 8.8E-20 121.0 9.2 96 439-540 5-101 (102)
84 TIGR02187 GlrX_arch Glutaredox 99.6 3.6E-14 7.9E-19 132.2 16.8 177 335-540 35-214 (215)
85 PTZ00102 disulphide isomerase; 99.6 9.6E-15 2.1E-19 154.6 14.0 116 86-202 350-468 (477)
86 cd02975 PfPDO_like_N Pyrococcu 99.6 1.5E-14 3.3E-19 119.5 11.9 94 103-200 15-111 (113)
87 PRK10996 thioredoxin 2; Provis 99.6 8.8E-15 1.9E-19 125.9 10.6 103 433-541 34-138 (139)
88 cd02992 PDI_a_QSOX PDIa family 99.6 1.2E-14 2.5E-19 120.5 10.8 102 435-536 2-110 (114)
89 cd02987 Phd_like_Phd Phosducin 99.6 2.4E-14 5.3E-19 127.5 13.4 88 92-184 61-153 (175)
90 TIGR01295 PedC_BrcD bacterioci 99.6 2.5E-14 5.5E-19 119.4 12.6 97 94-195 7-120 (122)
91 KOG0190 Protein disulfide isom 99.6 7E-15 1.5E-19 147.2 10.4 112 432-547 23-137 (493)
92 KOG1731 FAD-dependent sulfhydr 99.6 2.1E-14 4.6E-19 142.7 13.5 225 93-319 39-291 (606)
93 KOG0907 Thioredoxin [Posttrans 99.6 8.8E-15 1.9E-19 117.6 8.4 85 450-541 19-105 (106)
94 cd02957 Phd_like Phosducin (Ph 99.6 1.2E-14 2.7E-19 120.6 9.4 88 434-527 4-94 (113)
95 PRK15412 thiol:disulfide inter 99.6 9.9E-14 2.1E-18 126.0 16.0 86 109-200 67-177 (185)
96 cd02951 SoxW SoxW family; SoxW 99.6 3.8E-14 8.3E-19 120.4 12.5 97 101-200 4-120 (125)
97 TIGR01068 thioredoxin thioredo 99.6 2.2E-14 4.8E-19 117.0 10.0 99 439-542 1-101 (101)
98 PRK14018 trifunctional thiored 99.6 5.6E-14 1.2E-18 143.9 14.8 88 109-198 55-172 (521)
99 cd02947 TRX_family TRX family; 99.5 8.2E-14 1.8E-18 111.6 12.1 90 102-195 2-92 (93)
100 cd02965 HyaE HyaE family; HyaE 99.5 2.1E-14 4.5E-19 115.1 7.7 95 435-535 11-109 (111)
101 cd02962 TMX2 TMX2 family; comp 99.5 3.8E-14 8.3E-19 122.2 9.8 87 433-520 27-122 (152)
102 TIGR00424 APS_reduc 5'-adenyly 99.5 4.1E-14 9E-19 143.1 11.5 104 434-540 351-461 (463)
103 cd03000 PDI_a_TMX3 PDIa family 99.5 5.8E-14 1.3E-18 114.9 10.3 94 442-541 7-103 (104)
104 KOG0908 Thioredoxin-like prote 99.5 5E-14 1.1E-18 125.1 10.4 98 99-201 8-108 (288)
105 TIGR02738 TrbB type-F conjugat 99.5 2.3E-13 4.9E-18 117.8 13.9 85 109-198 49-152 (153)
106 cd02987 Phd_like_Phd Phosducin 99.5 5.8E-14 1.3E-18 125.1 9.6 130 408-541 37-174 (175)
107 cd02950 TxlA TRX-like protein 99.5 9.1E-14 2E-18 119.8 10.3 98 442-545 11-113 (142)
108 PLN02309 5'-adenylylsulfate re 99.5 8.1E-14 1.7E-18 141.0 11.2 105 433-540 344-455 (457)
109 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1.1E-13 2.5E-18 114.2 9.9 83 434-520 4-89 (113)
110 cd02961 PDI_a_family Protein D 99.5 8.8E-14 1.9E-18 113.4 8.8 98 438-538 2-101 (101)
111 PTZ00062 glutaredoxin; Provisi 99.5 5.7E-13 1.2E-17 120.3 13.2 111 99-223 5-117 (204)
112 PRK03147 thiol-disulfide oxido 99.5 1.2E-12 2.6E-17 118.4 15.2 88 109-198 60-171 (173)
113 cd02988 Phd_like_VIAF Phosduci 99.5 4.7E-13 1E-17 120.7 12.4 87 92-185 81-171 (192)
114 cd02953 DsbDgamma DsbD gamma f 99.5 1.9E-13 4E-18 112.0 8.7 92 442-539 2-104 (104)
115 cd02988 Phd_like_VIAF Phosduci 99.5 2E-13 4.4E-18 123.1 9.4 126 410-541 60-191 (192)
116 TIGR00411 redox_disulf_1 small 99.5 7.1E-13 1.5E-17 103.4 11.1 80 113-198 2-81 (82)
117 PLN00410 U5 snRNP protein, DIM 99.5 2.1E-13 4.5E-18 114.9 8.2 97 440-541 10-119 (142)
118 cd02949 TRX_NTR TRX domain, no 99.5 2.1E-13 4.5E-18 110.0 8.0 91 444-539 5-97 (97)
119 cd02952 TRP14_like Human TRX-r 99.5 5E-13 1.1E-17 109.7 10.1 77 99-178 8-101 (119)
120 cd02984 TRX_PICOT TRX domain, 99.5 2.9E-13 6.2E-18 109.5 8.6 92 441-538 2-96 (97)
121 PRK13728 conjugal transfer pro 99.4 2.1E-12 4.5E-17 113.4 14.4 83 114-201 73-173 (181)
122 cd02982 PDI_b'_family Protein 99.4 6.6E-13 1.4E-17 108.7 10.4 87 109-198 11-102 (103)
123 cd03072 PDI_b'_ERp44 PDIb' fam 99.4 4E-13 8.6E-18 110.1 8.7 107 308-418 1-111 (111)
124 TIGR01295 PedC_BrcD bacterioci 99.4 5.4E-13 1.2E-17 111.4 8.7 98 436-539 8-121 (122)
125 cd03008 TryX_like_RdCVF Trypar 99.4 1.2E-12 2.6E-17 111.8 10.6 76 109-184 24-130 (146)
126 cd02975 PfPDO_like_N Pyrococcu 99.4 8.6E-13 1.9E-17 109.1 8.2 94 444-542 15-110 (113)
127 KOG4277 Uncharacterized conser 99.4 3.3E-13 7.1E-18 122.7 5.5 94 450-547 41-137 (468)
128 PTZ00051 thioredoxin; Provisio 99.4 1.8E-12 4E-17 104.9 8.8 91 437-535 3-96 (98)
129 TIGR01626 ytfJ_HI0045 conserve 99.4 6.4E-12 1.4E-16 111.2 12.8 81 109-195 58-176 (184)
130 cd02986 DLP Dim1 family, Dim1- 99.4 1.2E-12 2.6E-17 104.7 6.9 76 442-519 3-81 (114)
131 TIGR00385 dsbE periplasmic pro 99.4 1.3E-11 2.8E-16 111.0 13.4 86 108-199 61-171 (173)
132 KOG0908 Thioredoxin-like prote 99.4 2.5E-12 5.4E-17 114.4 8.5 102 440-548 8-112 (288)
133 cd03009 TryX_like_TryX_NRX Try 99.3 5.9E-12 1.3E-16 107.9 10.3 73 109-181 17-114 (131)
134 cd02959 ERp19 Endoplasmic reti 99.3 1.9E-12 4.2E-17 107.4 7.0 96 101-198 10-112 (117)
135 PTZ00062 glutaredoxin; Provisi 99.3 6.3E-12 1.4E-16 113.6 9.4 92 440-544 5-96 (204)
136 KOG0912 Thiol-disulfide isomer 99.3 3.3E-12 7.1E-17 116.8 6.9 105 440-547 2-111 (375)
137 PF13905 Thioredoxin_8: Thiore 99.3 1.8E-11 4E-16 98.3 10.5 68 110-178 1-94 (95)
138 cd02964 TryX_like_family Trypa 99.3 1.5E-11 3.2E-16 105.4 9.8 76 109-184 16-117 (132)
139 cd02947 TRX_family TRX family; 99.3 1.7E-11 3.6E-16 98.0 9.1 89 443-538 2-92 (93)
140 cd03010 TlpA_like_DsbE TlpA-li 99.3 2.6E-11 5.5E-16 103.4 10.6 78 109-191 24-126 (127)
141 cd02952 TRP14_like Human TRX-r 99.3 2.1E-11 4.5E-16 100.1 8.4 77 441-519 9-103 (119)
142 cd02951 SoxW SoxW family; SoxW 99.3 1.8E-11 4E-16 103.8 8.2 90 449-543 10-120 (125)
143 TIGR00412 redox_disulf_2 small 99.2 4.6E-11 1E-15 90.8 9.0 73 114-195 2-75 (76)
144 TIGR02740 TraF-like TraF-like 99.2 7.1E-11 1.5E-15 113.0 12.2 87 109-200 165-265 (271)
145 TIGR01130 ER_PDI_fam protein d 99.2 1.1E-08 2.3E-13 108.3 30.0 310 93-420 111-459 (462)
146 PF13098 Thioredoxin_2: Thiore 99.2 4.4E-11 9.6E-16 99.4 8.9 84 109-195 4-112 (112)
147 cd02959 ERp19 Endoplasmic reti 99.2 2.1E-11 4.6E-16 101.2 6.9 91 449-539 16-110 (117)
148 PHA02125 thioredoxin-like prot 99.2 9.8E-11 2.1E-15 89.0 9.8 68 114-193 2-71 (75)
149 cd02955 SSP411 TRX domain, SSP 99.2 1.5E-10 3.3E-15 96.3 11.5 77 99-178 4-92 (124)
150 cd03011 TlpA_like_ScsD_MtbDsbE 99.2 1.3E-10 2.8E-15 98.5 10.2 92 97-193 7-120 (123)
151 cd02983 P5_C P5 family, C-term 99.2 2.7E-10 6E-15 96.0 11.4 115 306-425 2-125 (130)
152 PTZ00056 glutathione peroxidas 99.2 1.6E-10 3.5E-15 105.6 10.8 91 109-201 38-180 (199)
153 PLN02399 phospholipid hydroper 99.2 3.2E-10 6.9E-15 105.2 11.7 104 95-200 84-235 (236)
154 cd02982 PDI_b'_family Protein 99.1 2E-10 4.4E-15 93.8 9.2 85 452-541 12-102 (103)
155 PRK00293 dipZ thiol:disulfide 99.1 2.2E-10 4.7E-15 121.7 11.8 96 99-198 459-569 (571)
156 KOG1731 FAD-dependent sulfhydr 99.1 4.8E-11 1E-15 119.2 6.2 111 432-542 37-153 (606)
157 TIGR00411 redox_disulf_1 small 99.1 2.3E-10 5.1E-15 89.1 7.8 78 455-541 2-81 (82)
158 cd03012 TlpA_like_DipZ_like Tl 99.1 4.4E-10 9.5E-15 95.5 10.0 75 109-185 22-125 (126)
159 PLN02919 haloacid dehalogenase 99.1 3.6E-10 7.9E-15 128.2 11.9 90 109-200 419-537 (1057)
160 PLN02412 probable glutathione 99.1 6.2E-10 1.3E-14 99.2 10.4 90 109-200 28-165 (167)
161 cd02966 TlpA_like_family TlpA- 99.1 5.6E-10 1.2E-14 93.2 9.3 74 109-184 18-116 (116)
162 PF08534 Redoxin: Redoxin; In 99.1 7.8E-10 1.7E-14 96.8 10.4 78 108-187 26-136 (146)
163 PF13848 Thioredoxin_6: Thiore 99.1 5.3E-09 1.1E-13 95.5 16.2 173 338-540 6-184 (184)
164 TIGR02540 gpx7 putative glutat 99.1 1.3E-09 2.8E-14 96.0 11.4 88 109-198 21-152 (153)
165 cd02967 mauD Methylamine utili 99.1 7.1E-10 1.5E-14 92.5 9.3 66 109-177 20-106 (114)
166 TIGR00412 redox_disulf_2 small 99.0 4.8E-10 1E-14 85.2 6.6 73 456-538 2-75 (76)
167 cd02973 TRX_GRX_like Thioredox 99.0 6.9E-10 1.5E-14 82.5 7.3 57 113-173 2-58 (67)
168 PRK11509 hydrogenase-1 operon 99.0 6E-09 1.3E-13 86.4 12.6 105 96-202 20-127 (132)
169 cd00340 GSH_Peroxidase Glutath 99.0 1.5E-09 3.3E-14 95.4 9.3 83 109-194 21-151 (152)
170 TIGR02661 MauD methylamine deh 99.0 4.9E-09 1.1E-13 95.5 12.6 86 109-198 73-178 (189)
171 PF01216 Calsequestrin: Calseq 99.0 5.3E-07 1.2E-11 85.2 25.3 312 203-549 36-375 (383)
172 cd03073 PDI_b'_ERp72_ERp57 PDI 99.0 1.9E-09 4E-14 88.1 7.9 101 309-415 2-111 (111)
173 cd03026 AhpF_NTD_C TRX-GRX-lik 99.0 4.1E-09 8.9E-14 82.5 9.5 77 109-192 11-87 (89)
174 COG2143 Thioredoxin-related pr 99.0 2E-08 4.3E-13 83.0 13.1 105 108-215 40-165 (182)
175 PRK00293 dipZ thiol:disulfide 98.9 2.6E-09 5.6E-14 113.6 10.0 99 440-542 459-570 (571)
176 TIGR02738 TrbB type-F conjugat 98.9 5.7E-09 1.2E-13 90.5 9.3 86 452-541 50-152 (153)
177 PF13098 Thioredoxin_2: Thiore 98.9 7.1E-10 1.5E-14 92.1 3.0 84 450-538 3-112 (112)
178 PHA02125 thioredoxin-like prot 98.9 3.6E-09 7.8E-14 80.3 6.6 67 456-536 2-71 (75)
179 cd03069 PDI_b_ERp57 PDIb famil 98.9 1.1E-08 2.4E-13 83.1 9.0 95 203-303 2-103 (104)
180 cd03066 PDI_b_Calsequestrin_mi 98.9 1.5E-08 3.3E-13 82.0 9.8 98 203-304 2-101 (102)
181 TIGR02740 TraF-like TraF-like 98.9 6.2E-09 1.3E-13 99.7 8.7 89 451-543 165-265 (271)
182 PRK14018 trifunctional thiored 98.9 9.2E-09 2E-13 106.0 10.4 88 449-540 53-171 (521)
183 cd02958 UAS UAS family; UAS is 98.9 4.4E-08 9.5E-13 81.4 12.6 93 104-199 11-111 (114)
184 cd02981 PDI_b_family Protein D 98.8 1.9E-08 4.2E-13 81.0 9.4 95 204-303 2-97 (97)
185 KOG2501 Thioredoxin, nucleored 98.8 7.9E-09 1.7E-13 87.1 7.2 73 109-181 32-130 (157)
186 PTZ00256 glutathione peroxidas 98.8 2.3E-08 4.9E-13 90.7 10.4 89 109-199 39-181 (183)
187 cd02969 PRX_like1 Peroxiredoxi 98.8 5.9E-08 1.3E-12 87.2 11.9 91 109-202 24-155 (171)
188 cd02955 SSP411 TRX domain, SSP 98.8 2.4E-08 5.3E-13 83.1 8.4 75 443-520 7-95 (124)
189 PF13899 Thioredoxin_7: Thiore 98.8 3.6E-08 7.7E-13 76.4 8.5 70 102-175 9-81 (82)
190 KOG0913 Thiol-disulfide isomer 98.8 1.7E-09 3.6E-14 96.0 0.9 103 94-200 25-127 (248)
191 cd03008 TryX_like_RdCVF Trypar 98.8 2.2E-08 4.8E-13 85.7 7.7 68 451-518 24-124 (146)
192 PF13905 Thioredoxin_8: Thiore 98.8 3.7E-08 8E-13 79.0 8.5 67 452-518 1-94 (95)
193 PRK03147 thiol-disulfide oxido 98.8 6.4E-08 1.4E-12 87.3 11.1 101 435-540 45-170 (173)
194 cd02960 AGR Anterior Gradient 98.8 3.4E-08 7.3E-13 82.0 8.1 80 103-186 16-100 (130)
195 PRK15412 thiol:disulfide inter 98.8 3.3E-08 7.2E-13 89.8 8.9 85 450-542 66-176 (185)
196 cd03009 TryX_like_TryX_NRX Try 98.7 3.1E-08 6.8E-13 84.7 8.1 68 451-518 17-111 (131)
197 cd02964 TryX_like_family Trypa 98.7 3.4E-08 7.4E-13 84.5 8.0 69 451-519 16-112 (132)
198 cd03010 TlpA_like_DsbE TlpA-li 98.7 2.3E-08 4.9E-13 85.1 6.6 85 442-534 16-126 (127)
199 TIGR00385 dsbE periplasmic pro 98.7 6.2E-08 1.3E-12 87.1 9.6 85 450-542 61-171 (173)
200 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 5.8E-08 1.2E-12 82.1 8.6 92 437-536 6-120 (123)
201 cd03068 PDI_b_ERp72 PDIb famil 98.7 9.4E-08 2E-12 77.7 9.2 96 203-303 2-107 (107)
202 cd03017 PRX_BCP Peroxiredoxin 98.7 1.4E-07 3E-12 81.9 10.3 85 109-195 22-139 (140)
203 smart00594 UAS UAS domain. 98.7 3.8E-07 8.2E-12 76.6 11.8 88 105-195 22-121 (122)
204 COG4232 Thiol:disulfide interc 98.7 2.1E-07 4.4E-12 95.0 12.0 95 102-198 464-567 (569)
205 cd02973 TRX_GRX_like Thioredox 98.6 6.8E-08 1.5E-12 71.7 5.5 55 455-512 2-58 (67)
206 PF00578 AhpC-TSA: AhpC/TSA fa 98.6 3.1E-07 6.6E-12 77.8 10.2 67 109-177 24-118 (124)
207 PLN02919 haloacid dehalogenase 98.6 9.7E-08 2.1E-12 108.8 8.7 89 451-543 419-537 (1057)
208 cd02967 mauD Methylamine utili 98.6 1E-07 2.2E-12 79.4 6.7 33 451-483 20-52 (114)
209 cd02958 UAS UAS family; UAS is 98.6 3.1E-07 6.7E-12 76.3 9.5 95 443-542 5-111 (114)
210 PRK00522 tpx lipid hydroperoxi 98.6 5.2E-07 1.1E-11 80.4 11.4 65 109-177 43-141 (167)
211 cd02960 AGR Anterior Gradient 98.6 2.7E-07 5.8E-12 76.7 8.8 76 443-520 11-94 (130)
212 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.4E-07 3E-12 73.8 6.8 73 453-535 13-87 (89)
213 PRK11509 hydrogenase-1 operon 98.6 4.1E-07 9E-12 75.5 9.8 105 436-545 19-127 (132)
214 COG4232 Thiol:disulfide interc 98.6 1.4E-07 3.1E-12 96.1 8.0 104 437-542 457-568 (569)
215 COG0526 TrxA Thiol-disulfide i 98.6 3E-07 6.5E-12 77.0 8.8 65 110-177 32-99 (127)
216 cd03015 PRX_Typ2cys Peroxiredo 98.6 6.9E-07 1.5E-11 80.4 11.2 88 109-198 28-156 (173)
217 cd02966 TlpA_like_family TlpA- 98.5 2.5E-07 5.5E-12 76.9 7.6 79 439-519 7-111 (116)
218 cd02970 PRX_like2 Peroxiredoxi 98.5 6.6E-07 1.4E-11 78.5 10.5 45 110-156 24-68 (149)
219 TIGR03137 AhpC peroxiredoxin. 98.5 7.7E-07 1.7E-11 80.9 11.2 86 109-196 30-153 (187)
220 PRK09437 bcp thioredoxin-depen 98.5 1.1E-06 2.5E-11 77.4 11.8 81 109-191 29-145 (154)
221 PRK10606 btuE putative glutath 98.5 1E-06 2.2E-11 78.9 11.1 115 109-235 24-170 (183)
222 KOG0914 Thioredoxin-like prote 98.5 1.5E-07 3.2E-12 82.5 5.4 81 95-177 126-215 (265)
223 PRK13728 conjugal transfer pro 98.5 5.6E-07 1.2E-11 79.4 8.7 86 456-544 73-173 (181)
224 TIGR02196 GlrX_YruB Glutaredox 98.5 6.5E-07 1.4E-11 67.8 8.1 68 114-195 2-73 (74)
225 cd03014 PRX_Atyp2cys Peroxired 98.5 9.2E-07 2E-11 76.9 9.5 72 109-184 25-128 (143)
226 PF13899 Thioredoxin_7: Thiore 98.4 2.6E-07 5.5E-12 71.6 4.5 64 449-514 14-81 (82)
227 PRK13190 putative peroxiredoxi 98.4 2E-06 4.3E-11 79.1 10.9 89 109-199 26-154 (202)
228 PRK10382 alkyl hydroperoxide r 98.4 3E-06 6.6E-11 76.4 11.5 88 109-198 30-155 (187)
229 smart00594 UAS UAS domain. 98.4 2.3E-06 5E-11 71.8 9.9 96 441-538 13-121 (122)
230 cd01659 TRX_superfamily Thiore 98.4 1.1E-06 2.5E-11 64.3 7.3 60 114-177 1-63 (69)
231 TIGR03143 AhpF_homolog putativ 98.4 6.4E-06 1.4E-10 88.4 15.7 182 325-538 367-554 (555)
232 cd02968 SCO SCO (an acronym fo 98.4 1.2E-06 2.7E-11 76.0 8.2 46 109-154 21-68 (142)
233 cd03012 TlpA_like_DipZ_like Tl 98.4 1.1E-06 2.3E-11 74.6 7.1 68 451-519 22-119 (126)
234 cd02971 PRX_family Peroxiredox 98.3 3.3E-06 7.1E-11 73.1 9.7 77 109-187 21-131 (140)
235 TIGR02200 GlrX_actino Glutared 98.3 2.4E-06 5.3E-11 65.3 7.7 69 114-195 2-75 (77)
236 cd03018 PRX_AhpE_like Peroxire 98.3 5.7E-06 1.2E-10 72.5 11.1 74 111-186 29-134 (149)
237 PRK15000 peroxidase; Provision 98.3 5.7E-06 1.2E-10 75.8 11.4 88 109-198 33-161 (200)
238 TIGR02661 MauD methylamine deh 98.3 3.2E-06 6.9E-11 77.0 9.2 84 451-540 73-177 (189)
239 PLN02399 phospholipid hydroper 98.3 4E-06 8.6E-11 78.1 9.6 101 437-542 85-234 (236)
240 PF02114 Phosducin: Phosducin; 98.3 3.8E-06 8.3E-11 79.6 9.7 112 433-547 124-243 (265)
241 PF13728 TraF: F plasmid trans 98.3 7E-06 1.5E-10 75.8 11.1 81 110-195 120-214 (215)
242 PTZ00056 glutathione peroxidas 98.3 3.6E-06 7.8E-11 77.1 8.6 57 436-494 24-80 (199)
243 KOG0913 Thiol-disulfide isomer 98.2 5.4E-07 1.2E-11 80.4 2.8 99 435-541 25-125 (248)
244 KOG0914 Thioredoxin-like prote 98.2 1.7E-06 3.7E-11 75.9 5.6 87 434-521 124-220 (265)
245 cd03016 PRX_1cys Peroxiredoxin 98.2 1.5E-05 3.2E-10 73.5 11.3 86 111-198 26-153 (203)
246 PF07912 ERp29_N: ERp29, N-ter 98.2 7E-05 1.5E-09 60.2 13.2 106 93-200 4-120 (126)
247 PF08534 Redoxin: Redoxin; In 98.2 5.2E-06 1.1E-10 72.4 7.6 80 439-519 16-127 (146)
248 PRK13189 peroxiredoxin; Provis 98.2 1.9E-05 4.1E-10 73.6 11.2 88 109-198 34-162 (222)
249 TIGR01626 ytfJ_HI0045 conserve 98.1 8E-06 1.7E-10 72.7 8.1 84 451-537 58-175 (184)
250 PF02114 Phosducin: Phosducin; 98.1 1.3E-05 2.8E-10 76.1 9.7 101 93-198 125-237 (265)
251 PTZ00137 2-Cys peroxiredoxin; 98.1 3.1E-05 6.7E-10 73.2 11.6 88 109-198 97-224 (261)
252 PF13192 Thioredoxin_3: Thiore 98.1 3.8E-05 8.1E-10 58.3 10.0 72 116-196 4-76 (76)
253 cd00340 GSH_Peroxidase Glutath 98.1 7.5E-06 1.6E-10 71.9 7.0 42 451-494 21-62 (152)
254 PF03190 Thioredox_DsbH: Prote 98.1 3.4E-05 7.3E-10 66.6 10.6 79 98-179 25-115 (163)
255 PRK13599 putative peroxiredoxi 98.1 3.2E-05 6.9E-10 71.6 11.2 88 109-198 27-155 (215)
256 PF14595 Thioredoxin_9: Thiore 98.1 1.6E-05 3.4E-10 66.9 8.3 75 110-188 41-119 (129)
257 cd02969 PRX_like1 Peroxiredoxi 98.1 1.9E-05 4E-10 71.0 9.3 88 451-543 24-153 (171)
258 PLN02412 probable glutathione 98.1 1.1E-05 2.4E-10 71.9 7.7 102 436-542 14-164 (167)
259 PRK13191 putative peroxiredoxi 98.1 3.2E-05 6.9E-10 71.7 11.0 88 109-198 32-160 (215)
260 PF06110 DUF953: Eukaryotic pr 98.1 1.5E-05 3.1E-10 65.3 7.2 73 443-517 7-100 (119)
261 cd02991 UAS_ETEA UAS family, E 98.0 7.8E-05 1.7E-09 61.5 11.4 91 105-199 12-113 (116)
262 TIGR02180 GRX_euk Glutaredoxin 98.0 1.1E-05 2.5E-10 62.7 5.7 58 114-178 1-63 (84)
263 TIGR02739 TraF type-F conjugat 98.0 6.3E-05 1.4E-09 70.6 11.4 85 110-199 150-248 (256)
264 TIGR02540 gpx7 putative glutat 98.0 4E-05 8.7E-10 67.3 9.4 43 451-494 21-63 (153)
265 COG0526 TrxA Thiol-disulfide i 98.0 2E-05 4.4E-10 65.6 7.2 66 452-519 32-102 (127)
266 PF13192 Thioredoxin_3: Thiore 98.0 1.7E-05 3.7E-10 60.2 5.8 72 458-539 4-76 (76)
267 KOG0911 Glutaredoxin-related p 98.0 4.2E-05 9.1E-10 68.3 8.8 80 106-189 13-93 (227)
268 TIGR02200 GlrX_actino Glutared 97.9 1.3E-05 2.7E-10 61.2 4.8 68 456-539 2-76 (77)
269 KOG1672 ATP binding protein [P 97.9 2.4E-05 5.2E-10 67.8 6.8 86 95-184 68-155 (211)
270 PF06110 DUF953: Eukaryotic pr 97.9 5.1E-05 1.1E-09 62.1 8.4 74 101-177 6-99 (119)
271 TIGR02196 GlrX_YruB Glutaredox 97.9 2.2E-05 4.9E-10 59.2 5.9 67 456-539 2-74 (74)
272 PF13728 TraF: F plasmid trans 97.9 3.7E-05 8E-10 71.0 8.0 85 451-538 119-214 (215)
273 KOG2501 Thioredoxin, nucleored 97.9 1.4E-05 3.1E-10 67.7 4.5 69 451-519 32-129 (157)
274 PTZ00256 glutathione peroxidas 97.9 6.4E-05 1.4E-09 68.1 9.1 57 436-494 25-82 (183)
275 PTZ00253 tryparedoxin peroxida 97.9 0.00013 2.9E-09 67.0 11.3 88 109-198 35-163 (199)
276 cd01659 TRX_superfamily Thiore 97.8 4.5E-05 9.7E-10 55.6 6.2 58 456-516 1-63 (69)
277 KOG3425 Uncharacterized conser 97.8 7E-05 1.5E-09 59.4 7.1 73 101-176 13-104 (128)
278 PRK15317 alkyl hydroperoxide r 97.8 0.00074 1.6E-08 72.1 16.2 174 326-542 21-198 (517)
279 PRK13703 conjugal pilus assemb 97.8 0.0002 4.3E-09 66.9 10.2 85 110-199 143-241 (248)
280 PF07912 ERp29_N: ERp29, N-ter 97.7 0.00078 1.7E-08 54.3 11.7 106 435-545 5-122 (126)
281 cd02981 PDI_b_family Protein D 97.7 0.0003 6.5E-09 56.4 9.7 87 101-197 8-96 (97)
282 PF14595 Thioredoxin_9: Thiore 97.7 3.7E-05 8E-10 64.7 4.4 68 451-519 40-111 (129)
283 cd02976 NrdH NrdH-redoxin (Nrd 97.7 0.00021 4.6E-09 53.6 8.0 67 114-194 2-72 (73)
284 PRK10877 protein disulfide iso 97.7 0.00013 2.7E-09 68.6 8.1 83 109-198 106-230 (232)
285 KOG3425 Uncharacterized conser 97.7 0.00019 4.1E-09 57.1 7.6 73 443-517 14-106 (128)
286 TIGR02739 TraF type-F conjugat 97.7 0.00015 3.2E-09 68.2 8.2 88 452-542 150-248 (256)
287 PF00578 AhpC-TSA: AhpC/TSA fa 97.6 0.00014 3.1E-09 61.3 6.9 68 451-519 24-121 (124)
288 KOG2603 Oligosaccharyltransfer 97.6 0.0004 8.6E-09 65.2 10.2 113 91-203 38-170 (331)
289 KOG2603 Oligosaccharyltransfer 97.6 0.00046 9.9E-09 64.8 10.5 115 433-547 39-171 (331)
290 cd03072 PDI_b'_ERp44 PDIb' fam 97.6 0.00061 1.3E-08 55.8 10.0 101 95-200 1-109 (111)
291 PRK11200 grxA glutaredoxin 1; 97.6 0.00017 3.7E-09 56.1 6.4 76 113-199 2-83 (85)
292 PRK13703 conjugal pilus assemb 97.6 0.00024 5.2E-09 66.3 8.3 88 452-542 143-241 (248)
293 PRK11200 grxA glutaredoxin 1; 97.6 0.0003 6.5E-09 54.7 7.3 75 455-543 2-84 (85)
294 COG2143 Thioredoxin-related pr 97.6 0.00048 1E-08 57.6 8.6 85 450-539 40-146 (182)
295 cd03017 PRX_BCP Peroxiredoxin 97.6 0.00018 3.9E-09 62.2 6.4 80 452-535 23-136 (140)
296 TIGR03140 AhpF alkyl hydropero 97.6 0.0028 6E-08 67.7 16.7 176 326-543 21-200 (515)
297 cd03070 PDI_b_ERp44 PDIb famil 97.5 0.00028 6.1E-09 54.5 6.5 83 203-292 1-85 (91)
298 TIGR03143 AhpF_homolog putativ 97.5 0.0056 1.2E-07 66.0 18.8 177 110-300 366-554 (555)
299 cd03020 DsbA_DsbC_DsbG DsbA fa 97.5 0.00041 8.9E-09 63.8 8.7 79 109-195 76-197 (197)
300 PF00462 Glutaredoxin: Glutare 97.5 0.0006 1.3E-08 48.9 7.6 54 114-178 1-58 (60)
301 TIGR02180 GRX_euk Glutaredoxin 97.5 0.00015 3.3E-09 56.3 4.5 70 456-540 1-77 (84)
302 cd03074 PDI_b'_Calsequestrin_C 97.5 0.001 2.2E-08 51.7 8.6 109 306-415 1-120 (120)
303 cd03067 PDI_b_PDIR_N PDIb fami 97.5 0.0011 2.3E-08 51.0 8.7 94 100-197 9-110 (112)
304 cd02983 P5_C P5 family, C-term 97.4 0.0039 8.4E-08 52.7 12.8 108 94-203 3-119 (130)
305 PF11009 DUF2847: Protein of u 97.4 0.0026 5.6E-08 50.6 10.8 90 99-191 6-104 (105)
306 cd03073 PDI_b'_ERp72_ERp57 PDI 97.4 0.0012 2.6E-08 54.0 9.3 98 97-198 3-110 (111)
307 cd03023 DsbA_Com1_like DsbA fa 97.4 0.0013 2.8E-08 57.7 10.3 31 109-139 4-34 (154)
308 PF13462 Thioredoxin_4: Thiore 97.4 0.0029 6.2E-08 56.1 12.3 84 109-197 11-162 (162)
309 cd02991 UAS_ETEA UAS family, E 97.4 0.001 2.2E-08 54.9 8.1 97 443-542 5-113 (116)
310 KOG3414 Component of the U4/U6 97.3 0.0029 6.2E-08 50.8 9.8 75 100-177 11-87 (142)
311 cd03015 PRX_Typ2cys Peroxiredo 97.3 0.001 2.2E-08 59.8 8.0 86 452-541 29-156 (173)
312 KOG1672 ATP binding protein [P 97.3 0.00085 1.8E-08 58.4 6.7 104 434-541 66-177 (211)
313 PRK15317 alkyl hydroperoxide r 97.2 0.002 4.3E-08 68.9 11.0 97 97-200 102-199 (517)
314 PRK09437 bcp thioredoxin-depen 97.2 0.0011 2.4E-08 58.3 7.5 57 437-495 16-73 (154)
315 TIGR03137 AhpC peroxiredoxin. 97.2 0.0013 2.7E-08 59.9 7.9 89 451-540 30-154 (187)
316 PRK00522 tpx lipid hydroperoxi 97.2 0.0014 3.1E-08 58.3 8.1 42 451-495 43-85 (167)
317 cd03419 GRX_GRXh_1_2_like Glut 97.2 0.0011 2.3E-08 51.1 6.0 56 114-178 2-62 (82)
318 TIGR02183 GRXA Glutaredoxin, G 97.2 0.001 2.2E-08 51.8 5.8 75 114-199 2-82 (86)
319 cd02968 SCO SCO (an acronym fo 97.1 0.00098 2.1E-08 57.6 5.9 45 451-495 21-68 (142)
320 TIGR02183 GRXA Glutaredoxin, G 97.1 0.0013 2.8E-08 51.2 5.9 76 456-545 2-85 (86)
321 cd03071 PDI_b'_NRX PDIb' famil 97.1 0.0022 4.7E-08 49.9 6.8 89 326-416 16-116 (116)
322 PRK11657 dsbG disulfide isomer 97.1 0.004 8.6E-08 59.3 10.3 82 110-196 117-249 (251)
323 cd02976 NrdH NrdH-redoxin (Nrd 97.0 0.0014 3E-08 49.1 5.5 67 456-537 2-72 (73)
324 cd02970 PRX_like2 Peroxiredoxi 96.9 0.0017 3.7E-08 56.7 5.8 46 452-498 23-69 (149)
325 PF07449 HyaE: Hydrogenase-1 e 96.9 0.0086 1.9E-07 47.9 9.1 91 93-187 9-103 (107)
326 cd03014 PRX_Atyp2cys Peroxired 96.9 0.0021 4.6E-08 55.6 6.1 42 451-495 25-67 (143)
327 KOG3170 Conserved phosducin-li 96.9 0.0079 1.7E-07 52.6 9.2 128 410-543 69-202 (240)
328 PRK10606 btuE putative glutath 96.9 0.0019 4.2E-08 58.0 5.7 57 436-495 10-66 (183)
329 TIGR02190 GlrX-dom Glutaredoxi 96.9 0.0034 7.3E-08 48.0 6.3 57 111-178 7-66 (79)
330 KOG3414 Component of the U4/U6 96.9 0.0036 7.7E-08 50.3 6.4 78 441-518 11-89 (142)
331 PHA03050 glutaredoxin; Provisi 96.9 0.0032 7E-08 51.1 6.4 68 103-178 6-78 (108)
332 cd03067 PDI_b_PDIR_N PDIb fami 96.8 0.0038 8.2E-08 48.1 6.0 87 326-413 21-110 (112)
333 PF02966 DIM1: Mitosis protein 96.8 0.014 3E-07 47.9 9.4 75 100-178 8-85 (133)
334 PRK10329 glutaredoxin-like pro 96.8 0.013 2.9E-07 44.8 9.0 71 114-198 3-76 (81)
335 cd02066 GRX_family Glutaredoxi 96.8 0.0051 1.1E-07 45.7 6.6 53 114-177 2-58 (72)
336 cd03018 PRX_AhpE_like Peroxire 96.8 0.0023 5E-08 55.8 5.4 44 452-496 28-72 (149)
337 PRK10382 alkyl hydroperoxide r 96.8 0.0071 1.5E-07 54.6 8.5 89 451-540 30-154 (187)
338 TIGR02194 GlrX_NrdH Glutaredox 96.8 0.0039 8.4E-08 46.6 5.8 67 114-193 1-70 (72)
339 TIGR02181 GRX_bact Glutaredoxi 96.7 0.0037 8E-08 47.7 5.4 54 114-178 1-58 (79)
340 TIGR03140 AhpF alkyl hydropero 96.7 0.012 2.5E-07 63.0 11.1 99 96-201 102-201 (515)
341 PRK10954 periplasmic protein d 96.7 0.022 4.8E-07 52.7 11.5 32 110-141 37-71 (207)
342 PF05768 DUF836: Glutaredoxin- 96.7 0.007 1.5E-07 46.4 6.7 78 113-196 1-81 (81)
343 cd03419 GRX_GRXh_1_2_like Glut 96.6 0.0032 6.9E-08 48.5 4.5 55 456-518 2-63 (82)
344 cd03019 DsbA_DsbA DsbA family, 96.6 0.013 2.8E-07 52.8 9.1 33 109-141 14-46 (178)
345 PRK13190 putative peroxiredoxi 96.6 0.008 1.7E-07 55.3 7.7 89 452-541 27-153 (202)
346 cd02971 PRX_family Peroxiredox 96.5 0.0043 9.2E-08 53.4 5.4 45 451-496 21-66 (140)
347 PRK15000 peroxidase; Provision 96.5 0.01 2.2E-07 54.4 8.0 89 451-540 33-160 (200)
348 cd03418 GRX_GRXb_1_3_like Glut 96.5 0.0089 1.9E-07 45.0 6.4 53 114-177 2-59 (75)
349 PF03190 Thioredox_DsbH: Prote 96.5 0.0058 1.3E-07 53.0 5.8 75 442-519 28-116 (163)
350 TIGR00365 monothiol glutaredox 96.5 0.015 3.3E-07 46.2 7.6 64 102-177 4-75 (97)
351 PRK10877 protein disulfide iso 96.5 0.011 2.4E-07 55.5 7.9 81 451-541 106-230 (232)
352 TIGR02189 GlrX-like_plant Glut 96.4 0.007 1.5E-07 48.4 5.5 53 114-177 10-69 (99)
353 KOG0911 Glutaredoxin-related p 96.4 0.0028 6.1E-08 56.9 3.2 75 450-530 15-91 (227)
354 cd03027 GRX_DEP Glutaredoxin ( 96.4 0.013 2.7E-07 44.0 6.4 49 114-171 3-55 (73)
355 KOG3171 Conserved phosducin-li 96.3 0.013 2.7E-07 51.9 6.5 106 435-543 139-252 (273)
356 PF00462 Glutaredoxin: Glutare 96.2 0.0069 1.5E-07 43.3 3.9 49 456-512 1-55 (60)
357 PRK13599 putative peroxiredoxi 96.1 0.024 5.2E-07 52.6 8.0 88 452-540 28-154 (215)
358 cd03029 GRX_hybridPRX5 Glutare 96.1 0.02 4.4E-07 42.7 6.3 66 114-195 3-71 (72)
359 PRK10329 glutaredoxin-like pro 96.0 0.031 6.8E-07 42.7 7.1 70 456-542 3-77 (81)
360 cd03066 PDI_b_Calsequestrin_mi 96.0 0.13 2.8E-06 41.4 11.1 93 96-198 3-100 (102)
361 cd03020 DsbA_DsbC_DsbG DsbA fa 96.0 0.018 4E-07 52.8 6.9 26 451-476 76-101 (197)
362 PHA03050 glutaredoxin; Provisi 96.0 0.0089 1.9E-07 48.5 4.1 60 455-519 14-80 (108)
363 cd03069 PDI_b_ERp57 PDIb famil 96.0 0.096 2.1E-06 42.3 10.1 89 99-198 7-103 (104)
364 KOG3170 Conserved phosducin-li 96.0 0.032 7E-07 49.0 7.5 84 93-183 91-178 (240)
365 PTZ00137 2-Cys peroxiredoxin; 95.9 0.042 9.2E-07 52.2 8.7 89 451-540 97-223 (261)
366 cd02972 DsbA_family DsbA famil 95.9 0.026 5.6E-07 44.7 6.3 59 114-175 1-91 (98)
367 cd02066 GRX_family Glutaredoxi 95.8 0.015 3.2E-07 43.1 4.4 53 456-518 2-60 (72)
368 cd03028 GRX_PICOT_like Glutare 95.7 0.036 7.7E-07 43.5 6.4 62 105-178 3-72 (90)
369 TIGR02190 GlrX-dom Glutaredoxi 95.7 0.019 4.1E-07 43.8 4.6 57 452-518 6-67 (79)
370 PRK13189 peroxiredoxin; Provis 95.7 0.041 8.9E-07 51.4 7.7 89 452-541 35-162 (222)
371 KOG2640 Thioredoxin [Function 95.7 0.01 2.2E-07 56.1 3.6 88 110-201 76-164 (319)
372 PRK10638 glutaredoxin 3; Provi 95.7 0.036 7.8E-07 42.7 6.1 53 114-177 4-60 (83)
373 COG0695 GrxC Glutaredoxin and 95.6 0.036 7.8E-07 42.3 5.9 51 114-173 3-59 (80)
374 COG1225 Bcp Peroxiredoxin [Pos 95.6 0.12 2.6E-06 44.6 9.5 88 109-198 29-155 (157)
375 PF05768 DUF836: Glutaredoxin- 95.6 0.014 3.1E-07 44.7 3.5 78 456-539 2-81 (81)
376 PF00837 T4_deiodinase: Iodoth 95.5 0.12 2.6E-06 47.6 9.6 58 84-141 73-133 (237)
377 PRK10824 glutaredoxin-4; Provi 95.4 0.054 1.2E-06 44.3 6.6 63 101-173 6-76 (115)
378 TIGR02194 GlrX_NrdH Glutaredox 95.4 0.027 5.8E-07 42.0 4.3 65 456-536 1-70 (72)
379 PF13743 Thioredoxin_5: Thiore 95.3 0.078 1.7E-06 47.5 7.8 26 116-141 2-27 (176)
380 cd03016 PRX_1cys Peroxiredoxin 95.3 0.063 1.4E-06 49.5 7.4 41 454-495 28-68 (203)
381 PF07449 HyaE: Hydrogenase-1 e 95.3 0.024 5.2E-07 45.4 3.9 84 434-520 9-96 (107)
382 cd02972 DsbA_family DsbA famil 95.2 0.036 7.8E-07 43.8 5.1 39 456-494 1-39 (98)
383 TIGR02181 GRX_bact Glutaredoxi 95.2 0.03 6.4E-07 42.7 4.3 55 456-518 1-59 (79)
384 cd03418 GRX_GRXb_1_3_like Glut 95.2 0.039 8.4E-07 41.5 4.7 55 456-518 2-61 (75)
385 TIGR02189 GlrX-like_plant Glut 95.1 0.045 9.8E-07 43.7 5.3 56 456-519 10-72 (99)
386 cd03027 GRX_DEP Glutaredoxin ( 95.1 0.047 1E-06 40.8 5.0 54 456-519 3-62 (73)
387 COG1999 Uncharacterized protei 95.1 0.57 1.2E-05 43.2 13.0 91 109-199 66-204 (207)
388 KOG1752 Glutaredoxin and relat 95.0 0.15 3.2E-06 40.9 7.6 63 102-173 6-73 (104)
389 PRK11657 dsbG disulfide isomer 94.9 0.13 2.8E-06 49.1 8.6 29 451-479 116-144 (251)
390 PF02966 DIM1: Mitosis protein 94.8 0.1 2.3E-06 42.9 6.5 96 441-539 8-114 (133)
391 cd03013 PRX5_like Peroxiredoxi 94.8 0.074 1.6E-06 46.6 6.0 56 108-165 28-88 (155)
392 cd03029 GRX_hybridPRX5 Glutare 94.7 0.071 1.5E-06 39.7 5.1 64 456-538 3-71 (72)
393 COG0695 GrxC Glutaredoxin and 94.6 0.055 1.2E-06 41.3 4.3 49 456-512 3-59 (80)
394 COG3019 Predicted metal-bindin 94.5 0.71 1.5E-05 38.3 10.5 74 112-198 26-103 (149)
395 PRK13191 putative peroxiredoxi 94.0 0.08 1.7E-06 49.1 4.9 89 452-541 33-160 (215)
396 cd03023 DsbA_Com1_like DsbA fa 93.7 0.13 2.8E-06 44.8 5.5 32 451-482 4-35 (154)
397 TIGR00365 monothiol glutaredox 93.5 0.16 3.6E-06 40.3 5.1 59 451-519 10-78 (97)
398 cd03028 GRX_PICOT_like Glutare 93.2 0.14 3.1E-06 40.0 4.4 59 452-518 7-73 (90)
399 PF00837 T4_deiodinase: Iodoth 92.8 1.1 2.3E-05 41.5 9.9 63 432-494 80-144 (237)
400 PTZ00253 tryparedoxin peroxida 92.8 0.2 4.2E-06 46.1 5.2 89 452-541 36-163 (199)
401 PRK10638 glutaredoxin 3; Provi 92.6 0.25 5.4E-06 38.0 4.9 53 456-518 4-62 (83)
402 PRK12759 bifunctional gluaredo 92.4 0.28 6.1E-06 50.4 6.3 51 114-173 4-66 (410)
403 PF01323 DSBA: DSBA-like thior 92.3 1.8 3.9E-05 39.3 11.1 38 113-152 1-38 (193)
404 COG1331 Highly conserved prote 92.0 0.57 1.2E-05 49.9 8.1 81 96-179 29-121 (667)
405 KOG3171 Conserved phosducin-li 92.0 0.5 1.1E-05 42.2 6.4 100 94-198 139-250 (273)
406 KOG2640 Thioredoxin [Function 91.9 0.092 2E-06 49.9 1.9 85 452-543 76-163 (319)
407 PF13462 Thioredoxin_4: Thiore 91.7 0.5 1.1E-05 41.5 6.5 44 451-494 11-54 (162)
408 PRK10824 glutaredoxin-4; Provi 91.6 0.33 7.2E-06 39.7 4.7 61 451-519 13-81 (115)
409 cd03019 DsbA_DsbA DsbA family, 91.2 0.33 7.1E-06 43.6 4.8 33 451-483 14-46 (178)
410 cd03068 PDI_b_ERp72 PDIb famil 91.2 4.3 9.4E-05 32.8 10.9 89 99-197 7-106 (107)
411 PF11009 DUF2847: Protein of u 90.7 0.64 1.4E-05 37.2 5.3 78 441-520 7-92 (105)
412 PRK09810 entericidin A; Provis 90.7 0.22 4.7E-06 31.8 2.1 22 1-23 1-22 (41)
413 KOG1752 Glutaredoxin and relat 90.3 0.83 1.8E-05 36.6 5.7 56 456-519 16-78 (104)
414 KOG2792 Putative cytochrome C 88.8 2.5 5.5E-05 39.3 8.2 92 109-200 138-276 (280)
415 cd02978 KaiB_like KaiB-like fa 88.5 2 4.3E-05 31.7 6.0 62 112-175 2-63 (72)
416 PRK12759 bifunctional gluaredo 88.2 0.66 1.4E-05 47.8 4.8 53 456-518 4-70 (410)
417 cd02974 AhpF_NTD_N Alkyl hydro 87.9 7.9 0.00017 30.4 9.6 73 110-198 19-93 (94)
418 PF02630 SCO1-SenC: SCO1/SenC; 87.7 2.3 4.9E-05 38.0 7.4 55 109-163 51-109 (174)
419 COG1651 DsbG Protein-disulfide 85.8 5.2 0.00011 37.9 9.3 37 158-198 206-242 (244)
420 TIGR02654 circ_KaiB circadian 85.3 4.7 0.0001 30.9 6.7 76 111-188 3-78 (87)
421 PF08139 LPAM_1: Prokaryotic m 84.7 0.76 1.6E-05 25.9 1.6 18 3-21 7-24 (25)
422 cd02974 AhpF_NTD_N Alkyl hydro 84.6 10 0.00023 29.8 8.7 74 452-540 18-92 (94)
423 PRK09301 circadian clock prote 84.6 4.5 9.8E-05 32.0 6.5 77 110-188 5-81 (103)
424 cd03031 GRX_GRX_like Glutaredo 84.5 3.4 7.4E-05 35.5 6.5 51 114-173 2-66 (147)
425 PRK10954 periplasmic protein d 84.2 1.4 3E-05 40.7 4.3 32 452-483 37-71 (207)
426 COG5510 Predicted small secret 83.7 1.2 2.5E-05 28.6 2.3 23 1-23 1-25 (44)
427 PRK10081 entericidin B membran 83.4 1.1 2.4E-05 29.7 2.2 23 1-23 1-25 (48)
428 PRK15396 murein lipoprotein; P 83.2 1 2.2E-05 33.7 2.3 23 1-23 1-24 (78)
429 COG0386 BtuE Glutathione perox 82.0 19 0.00042 30.8 9.6 124 95-232 10-148 (162)
430 PRK09973 putative outer membra 81.5 1.2 2.7E-05 33.7 2.3 23 1-23 1-23 (85)
431 cd03060 GST_N_Omega_like GST_N 80.3 9.7 0.00021 27.8 6.9 51 115-172 2-53 (71)
432 cd03041 GST_N_2GST_N GST_N fam 78.7 19 0.00042 26.8 8.2 71 114-198 2-76 (77)
433 COG0450 AhpC Peroxiredoxin [Po 76.5 26 0.00057 31.4 9.3 87 110-198 33-160 (194)
434 cd03040 GST_N_mPGES2 GST_N fam 76.1 26 0.00055 26.0 8.3 73 114-199 2-76 (77)
435 KOG2792 Putative cytochrome C 75.7 11 0.00023 35.3 6.8 87 452-542 139-275 (280)
436 PF04592 SelP_N: Selenoprotein 75.5 5.9 0.00013 36.5 5.1 46 109-154 25-71 (238)
437 TIGR00762 DegV EDD domain prot 75.1 10 0.00022 36.7 7.2 153 155-322 11-167 (275)
438 PF02402 Lysis_col: Lysis prot 74.2 1.5 3.3E-05 28.1 0.8 20 1-21 1-20 (46)
439 PF13417 GST_N_3: Glutathione 74.2 33 0.00071 25.3 10.1 72 116-201 1-73 (75)
440 TIGR02742 TrbC_Ftype type-F co 74.0 9.2 0.0002 32.1 5.6 54 490-543 55-116 (130)
441 cd03035 ArsC_Yffb Arsenate Red 73.6 2.7 5.9E-05 33.9 2.4 82 456-543 1-86 (105)
442 cd02977 ArsC_family Arsenate R 73.3 2.8 6E-05 33.8 2.4 82 456-543 1-88 (105)
443 PF06053 DUF929: Domain of unk 73.1 10 0.00022 35.7 6.2 70 435-515 45-114 (249)
444 COG3634 AhpF Alkyl hydroperoxi 72.5 1E+02 0.0023 30.6 12.8 163 335-540 31-196 (520)
445 KOG1651 Glutathione peroxidase 72.0 39 0.00084 29.5 8.9 122 95-228 19-153 (171)
446 cd03074 PDI_b'_Calsequestrin_C 71.5 51 0.0011 26.4 9.4 88 452-541 20-119 (120)
447 PRK13792 lysozyme inhibitor; P 71.5 2.4 5.2E-05 35.2 1.6 24 1-25 1-24 (127)
448 PF09822 ABC_transp_aux: ABC-t 70.4 1E+02 0.0023 29.6 13.5 77 91-167 5-88 (271)
449 cd03031 GRX_GRX_like Glutaredo 70.4 8.5 0.00018 33.2 4.7 53 456-518 2-70 (147)
450 COG5567 Predicted small peripl 70.1 4.4 9.5E-05 27.5 2.2 24 1-24 1-24 (58)
451 PF13743 Thioredoxin_5: Thiore 70.0 5.2 0.00011 35.8 3.6 33 458-490 2-34 (176)
452 cd03013 PRX5_like Peroxiredoxi 69.6 8.7 0.00019 33.5 4.8 45 452-496 30-75 (155)
453 PF02630 SCO1-SenC: SCO1/SenC; 68.9 19 0.00042 32.1 7.0 60 436-496 37-98 (174)
454 PHA03075 glutaredoxin-like pro 68.6 8.9 0.00019 30.9 4.1 36 111-153 2-37 (123)
455 COG4545 Glutaredoxin-related p 68.3 9.8 0.00021 27.9 3.8 53 115-177 5-73 (85)
456 cd03051 GST_N_GTT2_like GST_N 68.0 22 0.00047 25.9 6.2 52 115-173 2-57 (74)
457 cd03036 ArsC_like Arsenate Red 67.9 4.3 9.3E-05 33.1 2.4 81 457-543 2-89 (111)
458 PF13627 LPAM_2: Prokaryotic l 67.9 4.6 9.9E-05 22.6 1.7 16 9-24 4-19 (24)
459 TIGR02742 TrbC_Ftype type-F co 67.4 12 0.00026 31.4 4.9 43 156-198 60-114 (130)
460 PRK11548 outer membrane biogen 67.2 4.2 9.1E-05 33.3 2.2 22 1-22 1-22 (113)
461 PRK01655 spxA transcriptional 67.1 5.4 0.00012 33.7 2.9 22 456-477 2-23 (131)
462 cd00570 GST_N_family Glutathio 67.0 16 0.00034 25.9 5.2 52 115-173 2-55 (71)
463 PHA03075 glutaredoxin-like pro 66.1 6.1 0.00013 31.8 2.7 30 453-482 2-31 (123)
464 cd02977 ArsC_family Arsenate R 66.0 5.5 0.00012 32.0 2.6 32 115-155 2-33 (105)
465 PRK01655 spxA transcriptional 65.5 11 0.00025 31.7 4.6 35 114-157 2-36 (131)
466 cd03037 GST_N_GRX2 GST_N famil 65.5 22 0.00048 25.8 5.7 67 116-195 3-69 (71)
467 PF00255 GSHPx: Glutathione pe 65.5 13 0.00029 30.0 4.7 44 109-155 20-63 (108)
468 PF09673 TrbC_Ftype: Type-F co 64.8 23 0.0005 28.9 6.1 45 127-176 36-80 (113)
469 TIGR01617 arsC_related transcr 63.8 12 0.00026 30.8 4.3 34 115-157 2-35 (117)
470 cd00570 GST_N_family Glutathio 63.8 20 0.00044 25.3 5.3 50 457-512 2-55 (71)
471 COG3417 FlgN Collagen-binding 62.8 5.7 0.00012 35.1 2.2 22 1-22 1-22 (200)
472 cd03035 ArsC_Yffb Arsenate Red 62.8 7 0.00015 31.5 2.6 33 115-156 2-34 (105)
473 KOG0852 Alkyl hydroperoxide re 62.6 49 0.0011 29.1 7.6 90 109-198 32-160 (196)
474 KOG2507 Ubiquitin regulatory p 62.4 86 0.0019 31.7 10.3 89 109-199 17-111 (506)
475 COG4594 FecB ABC-type Fe3+-cit 61.8 6.4 0.00014 36.6 2.4 25 1-25 3-27 (310)
476 PRK12559 transcriptional regul 60.6 8.4 0.00018 32.5 2.9 22 456-477 2-23 (131)
477 PF07172 GRP: Glycine rich pro 60.2 8.9 0.00019 30.1 2.7 10 1-10 1-10 (95)
478 TIGR01617 arsC_related transcr 60.1 7.1 0.00015 32.1 2.3 80 457-543 2-89 (117)
479 PRK11372 lysozyme inhibitor; P 60.0 6.5 0.00014 31.8 2.0 21 1-23 1-21 (109)
480 PRK11616 hypothetical protein; 59.1 7.9 0.00017 30.9 2.2 23 1-23 1-23 (109)
481 PF06053 DUF929: Domain of unk 58.1 26 0.00057 33.0 5.8 58 108-175 56-113 (249)
482 PF07689 KaiB: KaiB domain; I 57.7 4.7 0.0001 30.7 0.7 54 117-172 3-56 (82)
483 PRK13733 conjugal transfer pro 57.3 7.2 0.00016 33.9 1.9 21 1-22 1-21 (171)
484 PF09673 TrbC_Ftype: Type-F co 57.1 23 0.0005 28.9 4.8 45 469-515 36-80 (113)
485 cd03036 ArsC_like Arsenate Red 56.9 10 0.00022 30.9 2.7 52 115-175 2-57 (111)
486 cd03032 ArsC_Spx Arsenate Redu 56.9 11 0.00023 31.0 2.9 82 456-543 2-88 (115)
487 COG3065 Slp Starvation-inducib 56.8 7.1 0.00015 34.1 1.7 22 2-23 5-26 (191)
488 COG3531 Predicted protein-disu 56.7 21 0.00046 31.9 4.7 43 157-199 164-209 (212)
489 COG2761 FrnE Predicted dithiol 55.3 25 0.00054 32.5 5.1 42 158-202 175-216 (225)
490 COG1331 Highly conserved prote 55.2 17 0.00036 39.3 4.5 78 438-518 30-121 (667)
491 PF11839 DUF3359: Protein of u 55.2 10 0.00022 29.7 2.2 22 1-23 1-22 (96)
492 COG1999 Uncharacterized protei 54.4 31 0.00068 31.7 5.7 61 437-498 53-118 (207)
493 PF12262 Lipase_bact_N: Bacter 54.3 9.7 0.00021 36.4 2.4 24 1-25 1-24 (268)
494 PF13956 Ibs_toxin: Toxin Ibs, 54.0 7.1 0.00015 19.8 0.8 6 1-6 1-6 (19)
495 COG3017 LolB Outer membrane li 53.6 9.1 0.0002 34.4 2.0 24 1-24 3-26 (206)
496 KOG2507 Ubiquitin regulatory p 53.1 60 0.0013 32.8 7.6 87 450-540 16-109 (506)
497 cd03045 GST_N_Delta_Epsilon GS 52.5 59 0.0013 23.6 6.2 51 115-172 2-56 (74)
498 cd03059 GST_N_SspA GST_N famil 51.9 23 0.00051 25.7 3.8 69 115-197 2-71 (73)
499 PRK13344 spxA transcriptional 51.4 14 0.00031 31.1 2.8 21 456-476 2-22 (132)
500 cd03060 GST_N_Omega_like GST_N 51.1 14 0.00031 26.9 2.5 50 457-512 2-54 (71)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-73 Score=562.10 Aligned_cols=447 Identities=48% Similarity=0.807 Sum_probs=413.7
Q ss_pred CCCCeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcE
Q 007850 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPT 170 (587)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 170 (587)
....|+.|+..||...+..+..++|.||||||+||++++|.++++++.++..+..+.+++|||+++..+|.+|+|++|||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYPT 102 (493)
T ss_pred cccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCCe
Confidence 45679999999999999999999999999999999999999999999999988899999999999999999999999999
Q ss_pred EEEEeCCe-eeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhcccCCcee
Q 007850 171 IYFFVDGQ-HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVN 249 (587)
Q Consensus 171 ~~~~~~g~-~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~ 249 (587)
+.+|++|. ...|.|+++.+.|..|+++..+|.+..+.+.+++..++...+.++||||.+........+..++.+++++.
T Consensus 103 lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~vig~F~d~~~~~~~~~~~a~~l~~d~~ 182 (493)
T KOG0190|consen 103 LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVVVIGFFKDLESLAESFFDAASKLRDDYK 182 (493)
T ss_pred EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceEEEEEecccccchHHHHHHHHhccccce
Confidence 99999996 59999999999999999999999999999999999999999999999999888777555566779999999
Q ss_pred EEecCChhHHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceeecCCCCccccccCCcccEEE
Q 007850 250 FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLL 329 (587)
Q Consensus 250 F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~il 329 (587)
|+++++.++++.+++..+. .+.+++++..+.....| .|.++.+.|..||..+++|++..+|..+...++.+..+..++
T Consensus 183 F~~ts~~~~~~~~~~~~~~-~~~i~l~kk~d~~~~~~-~~~~~~~~l~~Fi~~~~~plv~~ft~~~~~~~~~~~~~~~~~ 260 (493)
T KOG0190|consen 183 FAHTSDSDVAKKLELNTEG-TFPIVLFKKFDELLVKY-DGSFTPELLKKFIQENSLPLVTEFTVANNAKIYSSFVKLGLD 260 (493)
T ss_pred eeccCcHhHHhhccCCCCC-cceEEeccccccchhhc-ccccCHHHHHHHHHHhcccccceecccccceeecccccccee
Confidence 9999999999999987544 45688899999888889 999999999999999999999999999999999887777777
Q ss_pred EEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCC-CCCHHH
Q 007850 330 LFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG-ELTLDK 406 (587)
Q Consensus 330 ~~~~~--~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~-~~t~e~ 406 (587)
+|... +..+.+++.++++|++|+++++|+++|... ....+..||+.....|+.+++......+|.+.. +.+.++
T Consensus 261 ~~~~~~~~~~e~~~~~~~~vAk~f~~~l~Fi~~d~e~---~~~~~~~~Gl~~~~~~~~~v~~~~~~~Ky~~~~e~~~~~~ 337 (493)
T KOG0190|consen 261 FFVFFKCNRFEELRKKFEEVAKKFKGKLRFILIDPES---FARVLEFFGLEEEQLPIRAVILNEDGSKYPLEEEELDQEN 337 (493)
T ss_pred EEeccccccHHHHHHHHHHHHHhcccceEEEEEChHH---hhHHHHhcCcccccCCeeEEeeccccccccCccccccHHH
Confidence 77755 488999999999999999999999997544 334899999997777766667677788999876 599999
Q ss_pred HHHHHHHHhcCCCCCCCcCCCCCCCCC-CceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCC
Q 007850 407 IKTFGEDFLEGKLKPFFKSDPIPETND-GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD 485 (587)
Q Consensus 407 i~~fi~~~~~gkl~~~~ks~~~p~~~~-~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~ 485 (587)
|+.|+.++++|+++|+++|+++|+.++ ++++.++++||++.+.+.+++|+|.||||||+||+++.|.|++||+.+++..
T Consensus 338 ie~f~~~~l~Gk~~p~~kSqpiPe~~~~~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~ 417 (493)
T KOG0190|consen 338 IESFVKDFLDGKVKPHLKSQPIPEDNDRSPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDE 417 (493)
T ss_pred HHHHHHHHhcCccccccccCCCCcccccCCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCC
Confidence 999999999999999999999999997 7899999999999999999999999999999999999999999999999988
Q ss_pred cEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhhCC
Q 007850 486 SIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 486 ~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
++.++++|.+.|+.+...++++|||++||.|.+. +|+.|.|.++.+.+..|+.++++
T Consensus 418 ~vviAKmDaTaNd~~~~~~~~fPTI~~~pag~k~-~pv~y~g~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 418 NVVIAKMDATANDVPSLKVDGFPTILFFPAGHKS-NPVIYNGDRTLEDLKKFIKKSAT 474 (493)
T ss_pred CcEEEEeccccccCccccccccceEEEecCCCCC-CCcccCCCcchHHHHhhhccCCC
Confidence 9999999999999999999999999999999987 79999999999999999999988
No 2
>PTZ00102 disulphide isomerase; Provisional
Probab=100.00 E-value=3.1e-59 Score=493.65 Aligned_cols=429 Identities=37% Similarity=0.656 Sum_probs=370.7
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
.+..++..+|+.++.+++.++|+|||+||++|+++.|.|.++++.++..+.++.++.|||+.+..+|++|+|.++||+++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 112 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIKF 112 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEEE
Confidence 48899999999999999999999999999999999999999999987765679999999999999999999999999999
Q ss_pred EeCCeeeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-ccCCceeEEe
Q 007850 174 FVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQ 252 (587)
Q Consensus 174 ~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~ 252 (587)
|++|....|.|.++.+.|.+|+.+.+++++..+.+.+++..+.+.....+++++.+.+......|..+| .++..+.|+.
T Consensus 113 ~~~g~~~~y~g~~~~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~a~~~~~~~~F~~ 192 (477)
T PTZ00102 113 FNKGNPVNYSGGRTADGIVSWIKKLTGPAVTEVESASEIKLIAKKIFVAFYGEYTSKDSELYKKFEEVADKHREHAKFFV 192 (477)
T ss_pred EECCceEEecCCCCHHHHHHHHHHhhCCCceeecCHHHHHHhhccCcEEEEEEeccCCcHHHHHHHHHHHhccccceEEE
Confidence 999855599999999999999999999999999998888887777888888888877778888888877 6777788887
Q ss_pred cCChhHHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceeecCCCCccccccCCcccEEEEEE
Q 007850 253 TTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFA 332 (587)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~il~~~ 332 (587)
..+. ..+.+.+|+..+.....| .+ .+.++|..||..+++|++.+++.+++..++.++... ++++.
T Consensus 193 ~~~~------------~~~~~~~~~~~~~~~~~~-~~-~~~~~l~~fI~~~~~P~~~~~~~~~~~~~~~~~~~~-~~~~~ 257 (477)
T PTZ00102 193 KKHE------------GKNKIYVLHKDEEGVELF-MG-KTKEELEEFVSTESFPLFAEINAENYRRYISSGKDL-VWFCG 257 (477)
T ss_pred EcCC------------CCCcEEEEecCCCCcccC-CC-CCHHHHHHHHHHcCCCceeecCccchHHHhcCCccE-EEEec
Confidence 5442 236788888766555444 44 588999999999999999999999999998877533 23333
Q ss_pred eccchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCC----CCCHHHHH
Q 007850 333 VSNDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG----ELTLDKIK 408 (587)
Q Consensus 333 ~~~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~----~~t~e~i~ 408 (587)
...+.+.+.+.++++|++|++++.|+++|+... ...++..+|+.. .|.+++.+..+ +|.+.+ .++.++|.
T Consensus 258 ~~~~~~~~~~~~~~~A~~~~~~~~f~~vd~~~~--~~~~~~~~gi~~--~P~~~i~~~~~--~y~~~~~~~~~~~~~~l~ 331 (477)
T PTZ00102 258 TTEDYDKYKSVVRKVARKLREKYAFVWLDTEQF--GSHAKEHLLIEE--FPGLAYQSPAG--RYLLPPAKESFDSVEALI 331 (477)
T ss_pred CHHHHHHHHHHHHHHHHhccCceEEEEEechhc--chhHHHhcCccc--CceEEEEcCCc--ccCCCccccccCCHHHHH
Confidence 445667789999999999999999999998752 223678999975 68888776432 455443 37999999
Q ss_pred HHHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEE
Q 007850 409 TFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIV 488 (587)
Q Consensus 409 ~fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~ 488 (587)
+|++++++|+++++++|+++|+..++.++.+++++|++.+.+.+++|+|.|||+||++|+.+.|.|.++++.+++...+.
T Consensus 332 ~Fv~~~~~gk~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~ 411 (477)
T PTZ00102 332 EFFKDVEAGKVEKSIKSEPIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSII 411 (477)
T ss_pred HHHHHHhCCCCCcccccCCCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEE
Confidence 99999999999999999999998888999999999999988889999999999999999999999999999988766799
Q ss_pred EEEEeCCcccc--ccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhhCCCC
Q 007850 489 IAKMDGTTNEH--HRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 545 (587)
Q Consensus 489 ~~~id~~~~~~--~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 545 (587)
++.+|++.+.. ..++++++||+++|++|+++ +.+|.|.++.+.|.+||+++++.+
T Consensus 412 ~~~id~~~~~~~~~~~~v~~~Pt~~~~~~~~~~--~~~~~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 412 VAKMNGTANETPLEEFSWSAFPTILFVKAGERT--PIPYEGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred EEEEECCCCccchhcCCCcccCeEEEEECCCcc--eeEecCcCCHHHHHHHHHHcCCCC
Confidence 99999988764 58999999999999998763 568999999999999999998753
No 3
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=100.00 E-value=7.8e-59 Score=490.05 Aligned_cols=445 Identities=42% Similarity=0.739 Sum_probs=388.9
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
.|+.++.++|+.+++++++++|+|||+||++|+++.|.|.++++.+.+.+.++.|+.|||+.++.+|++++|.++||+++
T Consensus 2 ~v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 81 (462)
T TIGR01130 2 DVLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKI 81 (462)
T ss_pred CceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEE
Confidence 57899999999999999999999999999999999999999999998765679999999999999999999999999999
Q ss_pred EeCCe--eeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-ccCCcee-
Q 007850 174 FVDGQ--HKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVN- 249 (587)
Q Consensus 174 ~~~g~--~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~- 249 (587)
|++|. ...|.|.++.+.|.+|+.+.+++++..+++.++++.++...+..+|+|+.+........|.++| .+...+.
T Consensus 82 ~~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~a~~~~~~~~~ 161 (462)
T TIGR01130 82 FRNGEDSVSDYNGPRDADGIVKYMKKQSGPAVKEIETVADLEAFLADDDVVVIGFFKDLDSELNDTFLSVAEKLRDVYFF 161 (462)
T ss_pred EeCCccceeEecCCCCHHHHHHHHHHhcCCCceeecCHHHHHHHHhcCCcEEEEEECCCCcHHHHHHHHHHHHhhhccce
Confidence 99884 5899999999999999999999999999999999999999999999999887778888998887 4555555
Q ss_pred EEecCChhHHHhcCCCCCCCCCeEEEeccCCcce--eeccCCCC--ChhHHHHHHHhcCCCceeecCCCCccccccCCcc
Q 007850 250 FYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKI--SYFADGKF--DKSTIADFVFSNKLPLVTIFTRENAPSVFESPIK 325 (587)
Q Consensus 250 F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~--~~y~~g~~--~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~ 325 (587)
|+.+.+..+...++... +.+++|+..+... ..| .|+. +.++|..||..+++|++++++.+++..++..+ +
T Consensus 162 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~fi~~~~~p~v~~~~~~~~~~~~~~~-~ 235 (462)
T TIGR01130 162 FAHSSDVAAFAKLGAFP----DSVVLFKPKDEDEKFSKV-DGEMDTDVSDLEKFIRAESLPLVGEFTQETAAKYFESG-P 235 (462)
T ss_pred EEecCCHHHHhhcCCCC----CcEEEecccccccccccc-cCcccCCHHHHHHHHHHcCCCceEeeCCcchhhHhCCC-C
Confidence 45556667788887653 6677777655333 356 6655 46899999999999999999999999998876 4
Q ss_pred cEEEEEEec-c--chhhHHHHHHHHHHhccC-ceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCC-
Q 007850 326 NQLLLFAVS-N--DSEKLLPVFEEAAKSFKG-KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG- 400 (587)
Q Consensus 326 ~~il~~~~~-~--~~~~~~~~l~~vA~~~~~-~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~- 400 (587)
..++++... . .++.+.+.++++|++|++ .+.|+++|+.. ...+++.+|+.....|.+++++..+..+|.+.+
T Consensus 236 ~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~i~f~~~d~~~---~~~~~~~~~~~~~~~P~~vi~~~~~~~~y~~~~~ 312 (462)
T TIGR01130 236 LVVLYYNVDESLDPFEELRNRFLEAAKKFRGKFVNFAVADEED---FGRELEYFGLKAEKFPAVAIQDLEGNKKYPMDQE 312 (462)
T ss_pred ceeEEEEecCCchHHHHHHHHHHHHHHHCCCCeEEEEEecHHH---hHHHHHHcCCCccCCceEEEEeCCcccccCCCcC
Confidence 444433333 2 248899999999999997 89999999865 457889999987779999998776556788776
Q ss_pred CCCHHHHHHHHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHH
Q 007850 401 ELTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 480 (587)
Q Consensus 401 ~~t~e~i~~fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~ 480 (587)
.++.++|.+|++++++|+++|+++|+++|+..++.+..+++++|.+.+.+++++++|+||++||++|+.+.|.++++++.
T Consensus 313 ~~~~~~i~~fi~~~~~g~~~~~~~se~~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~ 392 (462)
T TIGR01130 313 EFSSENLEAFVKDFLDGKLKPYLKSEPIPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEK 392 (462)
T ss_pred CCCHHHHHHHHHHHhcCCCCeeeccCCCCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988888999999999999988899999999999999999999999999999
Q ss_pred hcCC-CcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhhCCCCCcc
Q 007850 481 LRGV-DSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFKI 548 (587)
Q Consensus 481 ~~~~-~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 548 (587)
+++. ..+.++.+|++.+.+..++++++||+++|++|++. .+..|.|..+.+.|.+||.++++.+++.
T Consensus 393 ~~~~~~~i~~~~id~~~n~~~~~~i~~~Pt~~~~~~~~~~-~~~~~~g~~~~~~l~~~l~~~~~~~~~~ 460 (462)
T TIGR01130 393 YKDAESDVVIAKMDATANDVPPFEVEGFPTIKFVPAGKKS-EPVPYDGDRTLEDFSKFIAKHATFPLEG 460 (462)
T ss_pred hhcCCCcEEEEEEECCCCccCCCCccccCEEEEEeCCCCc-CceEecCcCCHHHHHHHHHhcCCCCCcC
Confidence 9873 37999999999998877999999999999999875 5778999999999999999999887764
No 4
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=100.00 E-value=1.9e-36 Score=272.96 Aligned_cols=320 Identities=24% Similarity=0.398 Sum_probs=262.0
Q ss_pred cChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcC--CcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007850 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN--ESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~--~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (587)
++..|++.++.....++|+|||+||+.++.++|.|+++++.++... .++.++.|||+.+..++.+|.|..|||+.+|+
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 3567889999899999999999999999999999999999987662 36999999999999999999999999999999
Q ss_pred CC--eeeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-ccCCceeEEe
Q 007850 176 DG--QHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQ 252 (587)
Q Consensus 176 ~g--~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~ 252 (587)
+| ....|+|.++.+.|.+||++.+..++.++.+.++++.........+||||.+.++++++.|..+| -++.++.|.+
T Consensus 81 nG~~~~rEYRg~RsVeaL~efi~kq~s~~i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~~~~kva~~lr~dc~f~V 160 (375)
T KOG0912|consen 81 NGEMMKREYRGQRSVEALIEFIEKQLSDPINEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYDNLRKVASLLRDDCVFLV 160 (375)
T ss_pred ccchhhhhhccchhHHHHHHHHHHHhccHHHHHHhHHHHHhhhccccceEEEEeccCCCchHHHHHHHHHHHhhccEEEe
Confidence 99 34589999999999999999999999999999999999888889999999999999999999877 6799999988
Q ss_pred cCChhHHHhcCCCCCCCCCeEEEeccCCc-ceeeccCCCCC-hhHHHHHHHhcCCCceeecCCCCccccccCCcccEEEE
Q 007850 253 TTNPDVAKIFHLDSKVNRPALVMVKKETE-KISYFADGKFD-KSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLL 330 (587)
Q Consensus 253 ~~~~~l~~~~~~~~~~~~p~l~~~~~~~~-~~~~y~~g~~~-~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~il~ 330 (587)
........ .... ..+ ++++++... .-..| .|.++ .+.+..||...+.|+|+++|.+|..++.+.|.|+++ +
T Consensus 161 ~~gD~~~~-~~~~---~~~-~~~f~pd~~~~~~~f-~G~~~nf~el~~Wi~dKcvpLVREiTFeN~EELtEEGlPflI-L 233 (375)
T KOG0912|consen 161 GFGDLLKP-HEPP---GKN-ILVFDPDHSEPNHEF-LGSMTNFDELKQWIQDKCVPLVREITFENAEELTEEGLPFLI-L 233 (375)
T ss_pred eccccccC-CCCC---CCc-eEEeCCCcCCcCccc-ccccccHHHHHHHHHhcchhhhhhhhhccHHHHhhcCCceEE-E
Confidence 76532221 1111 112 555665442 22357 88876 789999999999999999999999999999987754 4
Q ss_pred EEeccchhhHHHHHHHHHHhccC---ceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccC---CCCCCH
Q 007850 331 FAVSNDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHIL---DGELTL 404 (587)
Q Consensus 331 ~~~~~~~~~~~~~l~~vA~~~~~---~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~---~~~~t~ 404 (587)
|.+.++.......-..+++++.+ -++|+..||.. ...-+.++|.++.++|+++|....+ .|.+ .+-..+
T Consensus 234 f~~kdD~~s~k~F~~aI~ReL~~e~~~in~l~ADG~~---f~hpL~HlgKs~~DLPviaIDsF~H--mylfp~f~di~~p 308 (375)
T KOG0912|consen 234 FRKKDDKESEKIFKNAIARELDDETLAINFLTADGKV---FKHPLRHLGKSPDDLPVIAIDSFRH--MYLFPDFNDINIP 308 (375)
T ss_pred EecCCcccHHHHHHHHHHHHhhhhhhccceeecCcce---ecchHHHhCCCcccCcEEEeeccce--eeecCchhhhcCc
Confidence 55555544444444566666643 38999999876 4456889999999999999987764 4443 345778
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCC
Q 007850 405 DKIKTFGEDFLEGKLKPFFKSDPIP 429 (587)
Q Consensus 405 e~i~~fi~~~~~gkl~~~~ks~~~p 429 (587)
..|.+|+.+..+|++..-+...+-|
T Consensus 309 GkLkqFv~DL~sgklHrefH~~~d~ 333 (375)
T KOG0912|consen 309 GKLKQFVADLHSGKLHREFHEGPDP 333 (375)
T ss_pred cHHHHHHHHHhCchhhHHhhcCCCC
Confidence 8999999999999999887766544
No 5
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.97 E-value=2.5e-28 Score=225.87 Aligned_cols=321 Identities=19% Similarity=0.313 Sum_probs=236.4
Q ss_pred CCeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhh------hH-HHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCC
Q 007850 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQAL------AP-EYAAAATELKSANESVVLAKVDATEENELAHEYDV 165 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~------~p-~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i 165 (587)
..|+.||.+||.+++++.+..+|+|+.+--.. +.. .. .++-+|+-+.. .+|.|+.||..++..+++++|+
T Consensus 34 DRVi~LneKNfk~~lKkyd~l~l~yh~p~~~d-k~~qkq~~m~E~~LELaAQVlE~--~gigfg~VD~~Kd~klAKKLgv 110 (383)
T PF01216_consen 34 DRVIDLNEKNFKRALKKYDVLVLYYHEPVESD-KVSQKQFQMTELVLELAAQVLED--KGIGFGMVDSKKDAKLAKKLGV 110 (383)
T ss_dssp --CEEE-TTTHHHHHHH-SEEEEEEE--STSS-HHHHHHHHHHHHHHHHHHHHCGG--CTEEEEEEETTTTHHHHHHHT-
T ss_pred cceEEcchhHHHHHHHhhcEEEEEEecCCccC-HHHHHHHHHHHHHHHHHHHhccc--cCcceEEeccHHHHHHHHhcCc
Confidence 35999999999999999999999999885322 222 12 33434444444 4799999999999999999999
Q ss_pred CCCcEEEEEeCCeeeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhccc-CCeEEEEEecCCCCcchHHHHHhc-c
Q 007850 166 QGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTS-ETKVVLGYLNSLVGSESEVLADAS-R 243 (587)
Q Consensus 166 ~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~f~~~a-~ 243 (587)
...+++++|++|..+.|.|.++++.|+.||...+..++..|++..++..|-+- ....+||||.+..+..++.|..|| .
T Consensus 111 ~E~~SiyVfkd~~~IEydG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~~yk~FeeAAe~ 190 (383)
T PF01216_consen 111 EEEGSIYVFKDGEVIEYDGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSEHYKEFEEAAEH 190 (383)
T ss_dssp -STTEEEEEETTEEEEE-S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSHHHHHHHHHHHH
T ss_pred cccCcEEEEECCcEEEecCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999888874 478999999998889999999988 8
Q ss_pred cCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceeecCCCCccccccCC
Q 007850 244 LEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESP 323 (587)
Q Consensus 244 ~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~ 323 (587)
++..+.|+.+.++.++++++++. ..+-+|++..+.+.+.+..+.+..+|.+||..|..|.++++++++........
T Consensus 191 F~p~IkFfAtfd~~vAk~L~lK~----nev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rptlrkl~~~~m~e~Wedd 266 (383)
T PF01216_consen 191 FQPYIKFFATFDKKVAKKLGLKL----NEVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPTLRKLRPEDMFETWEDD 266 (383)
T ss_dssp CTTTSEEEEE-SHHHHHHHT-ST----T-EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-SEEE--GGGHHHHHHSS
T ss_pred hcCceeEEEEecchhhhhcCccc----cceeeeccccCCCccCCCCCCCHHHHHHHHHHhchhHhhhCChhhhhhhhccc
Confidence 99999999999999999999964 78999999988888886667788999999999999999999999987766554
Q ss_pred c-ccEEEEEEecc--chhhHHHHHHHHHHhccC--ceEEEEEEcCCccc-ccchhhhcCCcCCCCcEEEEecCCCCcccc
Q 007850 324 I-KNQLLLFAVSN--DSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDV-GKPVSEYFGITGEAPKVLAYTGNDDAKKHI 397 (587)
Q Consensus 324 ~-~~~il~~~~~~--~~~~~~~~l~~vA~~~~~--~l~f~~vd~~~~~~-~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~ 397 (587)
. -.+++.|.... +..+++..++++|+...+ .+.++|+|.++... ...+-+.|||.-. .|.+.+++.....-..
T Consensus 267 ~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~tF~Idl~-~PqIGvVnvtdadsvW 345 (383)
T PF01216_consen 267 IDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEKTFGIDLS-RPQIGVVNVTDADSVW 345 (383)
T ss_dssp SSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHHHHTT-TT-S-EEEEEETTTSEEEE
T ss_pred CCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHhhcCcccc-CCceeEEeccccccch
Confidence 3 36788888774 467789999999999875 59999999877431 2233567898766 5888888776543333
Q ss_pred --CC---CCCCHHHHHHHHHHHhcCCCCC
Q 007850 398 --LD---GELTLDKIKTFGEDFLEGKLKP 421 (587)
Q Consensus 398 --~~---~~~t~e~i~~fi~~~~~gkl~~ 421 (587)
+. ...|.+.++.|+.++++|++..
T Consensus 346 ~dm~d~~d~pt~~~LedWieDVlsg~i~~ 374 (383)
T PF01216_consen 346 MDMDDDDDLPTAEELEDWIEDVLSGKINT 374 (383)
T ss_dssp C-STTTSS---HHHHHHHHHHHHCTCCTB
T ss_pred hccCCcccCCcHHHHHHHHHHHhcCCCCC
Confidence 33 2479999999999999999874
No 6
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.97 E-value=4.8e-30 Score=230.81 Aligned_cols=297 Identities=22% Similarity=0.349 Sum_probs=228.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCH
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (587)
....|+|.||||||+||+++.|.|.++.-.+++.+.+|.+++.||+..+.++.+++|++|||+.++++|..+.|+|+++.
T Consensus 42 dddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~dYRG~R~K 121 (468)
T KOG4277|consen 42 DDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAIDYRGGREK 121 (468)
T ss_pred cCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeeeecCCCccH
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhcccC-CceeEEecCChhHHHhcC-CCC
Q 007850 189 DAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLE-DDVNFYQTTNPDVAKIFH-LDS 266 (587)
Q Consensus 189 ~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~-~~~~F~~~~~~~l~~~~~-~~~ 266 (587)
+.|.+|..+...+-+..|.+-......+.....+..+||...+++....|..+|... ....|+. .+++++-.++ .+
T Consensus 122 d~iieFAhR~a~aiI~pi~enQ~~fehlq~Rhq~ffVf~Gtge~PL~d~fidAASe~~~~a~FfS-aseeVaPe~~~~k- 199 (468)
T KOG4277|consen 122 DAIIEFAHRCAAAIIEPINENQIEFEHLQARHQPFFVFFGTGEGPLFDAFIDAASEKFSVARFFS-ASEEVAPEENDAK- 199 (468)
T ss_pred HHHHHHHHhcccceeeecChhHHHHHHHhhccCceEEEEeCCCCcHHHHHHHHhhhheeeeeeec-cccccCCcccchh-
Confidence 999999999998888888774433344455555667788888889999999988544 3344544 3334433222 22
Q ss_pred CCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceeecCCCCccccccCCcccEEEEEEec------cchhhH
Q 007850 267 KVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLFAVS------NDSEKL 340 (587)
Q Consensus 267 ~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~il~~~~~------~~~~~~ 340 (587)
..|++.+|+.+. +..| .+-+.+++.+||+..++|.+-..+..++.++-.+++..++.+.... ....++
T Consensus 200 --empaV~VFKDet--f~i~--de~dd~dLseWinRERf~~fLa~dgflL~EiG~sGKLVaLaVidEkhk~nns~eh~~~ 273 (468)
T KOG4277|consen 200 --EMPAVAVFKDET--FEIE--DEGDDEDLSEWINRERFPGFLAADGFLLAEIGASGKLVALAVIDEKHKFNNSSEHREF 273 (468)
T ss_pred --hccceEEEccce--eEEE--ecCchhHHHHHHhHhhccchhhcccchHHHhCcCCceEEEEEeccccccCCcchhHHH
Confidence 369999998754 4443 2335789999999999999999999999999888865554444433 234677
Q ss_pred HHHHHHHHHhccC------ceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCC---CCCHHHHHHHH
Q 007850 341 LPVFEEAAKSFKG------KLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDG---ELTLDKIKTFG 411 (587)
Q Consensus 341 ~~~l~~vA~~~~~------~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~---~~t~e~i~~fi 411 (587)
+...+++|+.|++ +..|+|+|+.+ +...+.+..-..|.+++++.....+|.-.. ..+.++|.+|+
T Consensus 274 ~ki~eEaakd~Rd~pdfh~dFQF~hlDGnD------~~nqilM~als~P~l~i~NtsnqeYfLse~d~qikniedilqFi 347 (468)
T KOG4277|consen 274 HKIAEEAAKDLRDHPDFHNDFQFAHLDGND------LANQILMAALSEPHLFIFNTSNQEYFLSEDDPQIKNIEDILQFI 347 (468)
T ss_pred HHHHHHHHHHHHhChhhhhhceeeccchhH------HHHHHHHHhhcCCeEEEEecCchheeeccCChhhhhHHHHHHHH
Confidence 8888888888774 48999999754 333333444456888888777555555332 47888999999
Q ss_pred HHHhcCCC
Q 007850 412 EDFLEGKL 419 (587)
Q Consensus 412 ~~~~~gkl 419 (587)
++-..|-.
T Consensus 348 entsegI~ 355 (468)
T KOG4277|consen 348 ENTSEGID 355 (468)
T ss_pred hccccccc
Confidence 98655543
No 7
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.87 E-value=7e-22 Score=161.71 Aligned_cols=100 Identities=17% Similarity=0.311 Sum_probs=92.6
Q ss_pred CCeEEcChhhHHHH---HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHH-HHcCCCCC
Q 007850 93 KDVVVLKERNFSDV---IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA-HEYDVQGF 168 (587)
Q Consensus 93 ~~v~~l~~~~~~~~---~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~-~~~~i~~~ 168 (587)
+.|++|++.+|+.+ +.++++++|.|||+||+||+.++|.|+++++.+++ .+.|++|||+.+..+| ++|+|.++
T Consensus 9 ~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~---~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 9 SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD---QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CeEEEEEECCCChHHHHHhcCCccc
Confidence 56999999999986 57889999999999999999999999999999976 6999999999999999 58999999
Q ss_pred cEEEEEeCC-eeeEeecCCCHHHHHHHH
Q 007850 169 PTIYFFVDG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 169 Pt~~~~~~g-~~~~~~g~~~~~~l~~~i 195 (587)
||+++|++| ....|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRGPIEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCccceEEeCCCCHHHHHhhC
Confidence 999999998 678999999999998874
No 8
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1e-20 Score=192.34 Aligned_cols=310 Identities=27% Similarity=0.488 Sum_probs=220.1
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eee
Q 007850 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHK 180 (587)
Q Consensus 102 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~ 180 (587)
.+...+..+.+++|.||++||++|+.+.|.|.+++..+++ .+.++.|||+.+..+|.+|+|+++||+.+|..| ...
T Consensus 39 ~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~---~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~~~~~ 115 (383)
T KOG0191|consen 39 FFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKG---KVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPGKKPI 115 (383)
T ss_pred cHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcC---ceEEEEeCchhhHHHHHhcCCccCcEEEEEcCCCcee
Confidence 3445556788999999999999999999999999999988 899999999999999999999999999999988 789
Q ss_pred EeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhcccCCceeEEecCChhHHH
Q 007850 181 AYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADASRLEDDVNFYQTTNPDVAK 260 (587)
Q Consensus 181 ~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a~~~~~~~F~~~~~~~l~~ 260 (587)
.|.|..+.+.+..|+...+.+.+...... -++-
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~v~~----------------------------------- 148 (383)
T KOG0191|consen 116 DYSGPRNAESLAEFLIKELEPSVKKLVEG------------EVFE----------------------------------- 148 (383)
T ss_pred eccCcccHHHHHHHHHHhhccccccccCC------------ceEE-----------------------------------
Confidence 99999999999999999887766543321 0000
Q ss_pred hcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceeecCCCCccccccCCcccEEEEE-Eec-cchh
Q 007850 261 IFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFESPIKNQLLLF-AVS-NDSE 338 (587)
Q Consensus 261 ~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~~~~~~il~~-~~~-~~~~ 338 (587)
++..++...........++.| ... .+|+
T Consensus 149 --------------------------------------------------l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck 178 (383)
T KOG0191|consen 149 --------------------------------------------------LTKDNFDETVKDSDADWLVEFYAPWCGHCK 178 (383)
T ss_pred --------------------------------------------------ccccchhhhhhccCcceEEEEeccccHHhh
Confidence 000000000000011122223 332 5788
Q ss_pred hHHHHHHHHHHhcc--CceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCCCCHHHHHHHHHHHhc
Q 007850 339 KLLPVFEEAAKSFK--GKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLE 416 (587)
Q Consensus 339 ~~~~~l~~vA~~~~--~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~~~ 416 (587)
.+...+.++|..+. ..+.++.+|+.. ...++..+++.. .|.+.++..+....+.+.+..+.+.|..|+.+...
T Consensus 179 ~l~~~~~~~a~~~~~~~~v~~~~~d~~~---~~~~~~~~~v~~--~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 179 KLAPEWEKLAKLLKSKENVELGKIDATV---HKSLASRLEVRG--YPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred hcChHHHHHHHHhccCcceEEEeeccch---HHHHhhhhcccC--CceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence 88899999999886 568888888763 557788888876 58888887665434556678999999999999877
Q ss_pred CCCCCC-CcCCCCCCCCCCceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHH-hcCCCcEEEEEEeC
Q 007850 417 GKLKPF-FKSDPIPETNDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRGVDSIVIAKMDG 494 (587)
Q Consensus 417 gkl~~~-~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~~~~id~ 494 (587)
-...+. ..+-.-+...... .++.++|... .......++.|+++||.+|....|.+...+.. +.....+.+.+++|
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~--~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ 330 (383)
T KOG0191|consen 254 RNIPEPELKEIEDKDTFSPT--FLDTAEFLDS-LEKKKNKFVKFYAPWCGHCGGFAPVYEDKAELGYPDLSKIKAAKLDC 330 (383)
T ss_pred CCCCCcccccccCccccccc--hhhhhhhhhh-hHHhhhhHhhhhcchhhcccccchhHHHHHhccccccccceeecccc
Confidence 642221 1111101000011 1111222222 23456789999999999999999999999988 33445788888888
Q ss_pred Ccc--ccccCCCCcCcEEEEEeCCCcc
Q 007850 495 TTN--EHHRAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 495 ~~~--~~~~~~i~~~Pt~~~~~~~~~~ 519 (587)
..- .+....++.+|++.++..+...
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (383)
T KOG0191|consen 331 ALLKSLCQKAIVRGYPTIKLYNYGKNP 357 (383)
T ss_pred ccccchhhHhhhhcCceeEeecccccc
Confidence 653 3567789999999998877664
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=5.1e-21 Score=156.05 Aligned_cols=98 Identities=28% Similarity=0.695 Sum_probs=92.3
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
.+++++.++|++.+.++++++|+||++||++|+++.|.|.++++++++ .+.|+.|||++++.+|++++|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG---VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC---ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 578999999999998889999999999999999999999999999876 69999999999999999999999999999
Q ss_pred EeCC-eeeEeecCCCHHHHHHH
Q 007850 174 FVDG-QHKAYNGGRTKDAIVTW 194 (587)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~ 194 (587)
|++| ...+|.|.++.+.|.+|
T Consensus 79 ~~~g~~~~~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPEKYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcccCCCCCCHHHHHhh
Confidence 9999 67789999999999877
No 10
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.84 E-value=3.1e-20 Score=153.44 Aligned_cols=102 Identities=32% Similarity=0.715 Sum_probs=92.9
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcC---CcEEEEEEeCCCcHHHHHHcCCCCCcE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSAN---ESVVLAKVDATEENELAHEYDVQGFPT 170 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~---~~v~~~~vd~~~~~~l~~~~~i~~~Pt 170 (587)
.|+++++++|++++..+++++|.|||+||++|+++.|.|.++++.+++.. ..+.++.|||+.++.+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~Pt 81 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYPT 81 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCCE
Confidence 58899999999999889999999999999999999999999999875421 259999999999999999999999999
Q ss_pred EEEEeCCe--eeEeecCCCHHHHHHHH
Q 007850 171 IYFFVDGQ--HKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 171 ~~~~~~g~--~~~~~g~~~~~~l~~~i 195 (587)
+++|++|. ...|.|.++.+.|.+||
T Consensus 82 l~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 82 LKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999994 47899999999999885
No 11
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=8.7e-20 Score=150.10 Aligned_cols=104 Identities=17% Similarity=0.327 Sum_probs=92.5
Q ss_pred CCeEEcChhhHHHHHhC-CCeEEEEEECCCChh--hh--hhhHHHHHHHHHh--hhcCCcEEEEEEeCCCcHHHHHHcCC
Q 007850 93 KDVVVLKERNFSDVIEN-NKFVMVEFYAPWCGH--CQ--ALAPEYAAAATEL--KSANESVVLAKVDATEENELAHEYDV 165 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~--C~--~~~p~~~~~~~~~--~~~~~~v~~~~vd~~~~~~l~~~~~i 165 (587)
..|..+|++||++.+.+ ..++|+.||++||+| |+ ...|.+.+++.++ .+ ++.|++||++++++++++|+|
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~---~v~~~kVD~d~~~~La~~~~I 85 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDK---GIGFGLVDSKKDAKVAKKLGL 85 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcC---CCEEEEEeCCCCHHHHHHcCC
Confidence 45889999999987755 458899999999987 99 8888898888887 44 699999999999999999999
Q ss_pred CCCcEEEEEeCCeeeEeecCCCHHHHHHHHHHhc
Q 007850 166 QGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 166 ~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
+++||+++|++|....|.|.++.+.|.+||.+++
T Consensus 86 ~~iPTl~lfk~G~~v~~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 86 DEEDSIYVFKDDEVIEYDGEFAADTLVEFLLDLI 119 (120)
T ss_pred ccccEEEEEECCEEEEeeCCCCHHHHHHHHHHHh
Confidence 9999999999996666999999999999998764
No 12
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=3.7e-20 Score=153.22 Aligned_cols=104 Identities=33% Similarity=0.600 Sum_probs=95.5
Q ss_pred CeEEcChhhHHH-HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007850 94 DVVVLKERNFSD-VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (587)
Q Consensus 94 ~v~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (587)
.+..++...|++ +++.+.||+|.|||+||+||+.+.|.+++++.++.+ .+.++.||.+++.+++.+|+|.++||++
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g---~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG---KFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC---eEEEEEEccccccchHhhcceeeeeEEE
Confidence 456677888986 557789999999999999999999999999999977 8999999999999999999999999999
Q ss_pred EEeCC-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 173 FFVDG-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 173 ~~~~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
+|++| ...++.|..+.+.|.++|++.+.
T Consensus 121 vfknGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 121 VFKNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 99999 66699999999999999998764
No 13
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.83 E-value=2e-19 Score=147.76 Aligned_cols=101 Identities=44% Similarity=0.816 Sum_probs=95.0
Q ss_pred eEEcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
|..+|+++|++.+.+ +++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.|||++++.+|++|+|.++||+++
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~---~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~ 77 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD---NVKFAKVDCDENKELCKKYGVKSVPTIIF 77 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT---TSEEEEEETTTSHHHHHHTTCSSSSEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc---ccccchhhhhccchhhhccCCCCCCEEEE
Confidence 568899999999987 89999999999999999999999999999986 79999999999999999999999999999
Q ss_pred EeCC-eeeEeecCCCHHHHHHHHHHh
Q 007850 174 FVDG-QHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i~~~ 198 (587)
|++| ...+|.|.++.+.|.+||+++
T Consensus 78 ~~~g~~~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 78 FKNGKEVKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp EETTEEEEEEESSSSHHHHHHHHHHH
T ss_pred EECCcEEEEEECCCCHHHHHHHHHcC
Confidence 9999 566999999999999999874
No 14
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.82 E-value=1.1e-19 Score=148.43 Aligned_cols=100 Identities=39% Similarity=0.720 Sum_probs=90.4
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
.|++++..+|++++. ++ ++|+|||+||++|+.+.|.|.++++.+++ .++.++.|||++++.++++|+|.++||+++
T Consensus 2 ~v~~l~~~~f~~~~~-~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVLE-GE-WMIEFYAPWCPACQQLQPEWEEFADWSDD--LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHhC-CC-EEEEEECCCCHHHHHHhHHHHHHHHhhcc--CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 588999999999885 44 78999999999999999999999987654 359999999999999999999999999999
Q ss_pred EeCCeeeEeecCCCHHHHHHHHHH
Q 007850 174 FVDGQHKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 174 ~~~g~~~~~~g~~~~~~l~~~i~~ 197 (587)
|++|....|.|.++.+.|.+|+++
T Consensus 78 ~~~g~~~~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVFRRYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCEEEecCCCCHHHHHHHHhC
Confidence 999976889999999999999863
No 15
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.82 E-value=1.1e-19 Score=149.15 Aligned_cols=99 Identities=34% Similarity=0.721 Sum_probs=89.7
Q ss_pred CeEEcChhhHHHHH-hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007850 94 DVVVLKERNFSDVI-ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (587)
Q Consensus 94 ~v~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (587)
.++.++..+|++.+ ..+++++|.|||+||++|+.+.|.|.++++++.+ .+.|+.|||++++.+|++++|+++||++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~i~~~Pt~~ 78 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG---KVKVGSVDCQKYESLCQQANIRAYPTIR 78 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC---CcEEEEEECCchHHHHHHcCCCcccEEE
Confidence 47889999999876 4567999999999999999999999999999865 6999999999999999999999999999
Q ss_pred EEeCC--eeeEeecCCC-HHHHHHHH
Q 007850 173 FFVDG--QHKAYNGGRT-KDAIVTWI 195 (587)
Q Consensus 173 ~~~~g--~~~~~~g~~~-~~~l~~~i 195 (587)
+|++| ...+|.|..+ .++|.+||
T Consensus 79 ~~~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 79 LYPGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EEcCCCCCceEccCCCCCHHHHHhhC
Confidence 99876 6679999987 99998875
No 16
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.81 E-value=3.9e-19 Score=162.78 Aligned_cols=179 Identities=31% Similarity=0.497 Sum_probs=153.6
Q ss_pred ecCCCCcchHHHHHhc-ccCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccCCcceeeccCCC-CChhHHHHHHHhcC
Q 007850 227 LNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGK-FDKSTIADFVFSNK 304 (587)
Q Consensus 227 ~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~-~~~~~i~~fi~~~~ 304 (587)
|.+.++...+.|.++| .+++++.|+.+.++++++.++++. |+|++||+.+++...| .|. ++.++|.+||..++
T Consensus 1 F~~~~~~~~~~f~~~A~~~~~~~~F~~~~~~~~~~~~~~~~----p~i~~~k~~~~~~~~y-~~~~~~~~~l~~fI~~~~ 75 (184)
T PF13848_consen 1 FPDKDSELFEIFEEAAEKLKGDYQFGVTFNEELAKKYGIKE----PTIVVYKKFDEKPVVY-DGDKFTPEELKKFIKKNS 75 (184)
T ss_dssp ESTTTSHHHHHHHHHHHHHTTTSEEEEEE-HHHHHHCTCSS----SEEEEEECTTTSEEEE-SSSTTSHHHHHHHHHHHS
T ss_pred CCCcccHHHHHHHHHHHhCcCCcEEEEEcHHHHHHHhCCCC----CcEEEeccCCCCceec-ccccCCHHHHHHHHHHhc
Confidence 4556677889999887 678799999999999999999875 9999999988888999 887 89999999999999
Q ss_pred CCceeecCCCCccccccCCcccEEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCC
Q 007850 305 LPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAP 382 (587)
Q Consensus 305 ~p~v~~lt~~~~~~~~~~~~~~~il~~~~~--~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~ 382 (587)
+|++.++|.+++..++..+.+.++++|... ...+.+.+.++++|+++++++.|+|+|+.. ...+++.+|++..+.
T Consensus 76 ~P~v~~~t~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~---~~~~~~~~~i~~~~~ 152 (184)
T PF13848_consen 76 FPLVPELTPENFEKLFSSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADD---FPRLLKYFGIDEDDL 152 (184)
T ss_dssp STSCEEESTTHHHHHHSTSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTT---THHHHHHTTTTTSSS
T ss_pred cccccccchhhHHHHhcCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHH---hHHHHHHcCCCCccC
Confidence 999999999999999999887677777653 456788899999999999999999999874 557889999998889
Q ss_pred cEEEEecCCCCcc-ccCCCCCCHHHHHHHHHH
Q 007850 383 KVLAYTGNDDAKK-HILDGELTLDKIKTFGED 413 (587)
Q Consensus 383 p~~~i~~~~~~~~-y~~~~~~t~e~i~~fi~~ 413 (587)
|.+++++...+.+ |.+.++++.++|.+|+++
T Consensus 153 P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 153 PALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp SEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred CEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9999998665544 445789999999999975
No 17
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.80 E-value=9.4e-19 Score=160.59 Aligned_cols=104 Identities=32% Similarity=0.712 Sum_probs=93.7
Q ss_pred CCeEEcChhhHHHHHhC-----CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCC
Q 007850 93 KDVVVLKERNFSDVIEN-----NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG 167 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~-----~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 167 (587)
..++++++.+|++.+.. +++++|+|||+||++|+++.|.|+++++.+++ .+.++.|||+.++.++++|+|++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~---~v~~~~VD~~~~~~l~~~~~I~~ 106 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG---QVNVADLDATRALNLAKRFAIKG 106 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC---CeEEEEecCcccHHHHHHcCCCc
Confidence 46899999999998743 47899999999999999999999999999876 69999999999999999999999
Q ss_pred CcEEEEEeCCeeeEe-ecCCCHHHHHHHHHHhc
Q 007850 168 FPTIYFFVDGQHKAY-NGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 168 ~Pt~~~~~~g~~~~~-~g~~~~~~l~~~i~~~~ 199 (587)
+||+++|++|....| .|.++.+.|.+|+.+..
T Consensus 107 ~PTl~~f~~G~~v~~~~G~~s~e~L~~fi~~~~ 139 (224)
T PTZ00443 107 YPTLLLFDKGKMYQYEGGDRSTEKLAAFALGDF 139 (224)
T ss_pred CCEEEEEECCEEEEeeCCCCCHHHHHHHHHHHH
Confidence 999999999965554 57799999999998876
No 18
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.80 E-value=5.2e-19 Score=144.85 Aligned_cols=101 Identities=41% Similarity=0.819 Sum_probs=91.3
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
+++.+++++|+..+.++ +++|+|||+||++|+.+.|.|.++++.+++....+.++.|||+.+..+|++|+|.++||+++
T Consensus 1 ~~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 1 GVLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred CeeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 36789999999999776 59999999999999999999999999987633469999999999999999999999999999
Q ss_pred EeCC-eeeEeecCCCHHHHHHHH
Q 007850 174 FVDG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i 195 (587)
|++| ...+|.|.++.+.|.+||
T Consensus 80 ~~~g~~~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVDKYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeeeEeeCCCCHHHHHhhC
Confidence 9988 667899999999998875
No 19
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=5.9e-19 Score=162.21 Aligned_cols=105 Identities=32% Similarity=0.657 Sum_probs=97.5
Q ss_pred CeEEcChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcE
Q 007850 94 DVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPT 170 (587)
Q Consensus 94 ~v~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 170 (587)
.++++|..||.+.+ ....||+|+||+|||+||+++.|.+++++..+++ .+.+++|||+.++.++.+|||+++||
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G---~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG---KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC---ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 48999999999766 2346999999999999999999999999999988 89999999999999999999999999
Q ss_pred EEEEeCCe-eeEeecCCCHHHHHHHHHHhcCC
Q 007850 171 IYFFVDGQ-HKAYNGGRTKDAIVTWIKKKIGP 201 (587)
Q Consensus 171 ~~~~~~g~-~~~~~g~~~~~~l~~~i~~~~~~ 201 (587)
+++|.+|+ +..|.|....+.|.+|+.+.++.
T Consensus 101 V~af~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 99999994 56899999999999999999977
No 20
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.79 E-value=7e-19 Score=142.06 Aligned_cols=84 Identities=27% Similarity=0.595 Sum_probs=77.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-CcHHHHHHcCCCCCcEEEEEeCCeeeEeecCC
Q 007850 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAHEYDVQGFPTIYFFVDGQHKAYNGGR 186 (587)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~ 186 (587)
.+|++++|+|||+||++|+.++|.|+++++.+.+ +.++.||++ ..+.++++|+|.++||+++|++|...+|.|.+
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~----~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g~~~~~~G~~ 91 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ----IRHLAIEESSIKPSLLSRYGVVGFPTILLFNSTPRVRYNGTR 91 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc----CceEEEECCCCCHHHHHhcCCeecCEEEEEcCCceeEecCCC
Confidence 4689999999999999999999999999998854 788999998 78999999999999999999988778999999
Q ss_pred CHHHHHHHH
Q 007850 187 TKDAIVTWI 195 (587)
Q Consensus 187 ~~~~l~~~i 195 (587)
+.+.|.+|+
T Consensus 92 ~~~~l~~f~ 100 (100)
T cd02999 92 TLDSLAAFY 100 (100)
T ss_pred CHHHHHhhC
Confidence 999999885
No 21
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.78 E-value=1.7e-18 Score=143.11 Aligned_cols=99 Identities=22% Similarity=0.419 Sum_probs=87.2
Q ss_pred EcChhhHHH-HHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 97 VLKERNFSD-VIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 97 ~l~~~~~~~-~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
.++.++|.+ ++. .+++++|+|||+||++|+.+.|.|.++++++.+ .++.++.|||+.++.++++++|.++||+++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~--~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 8 SLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP--LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred eeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh--cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 456788875 442 679999999999999999999999999999976 258999999999999999999999999999
Q ss_pred EeCC-eeeEeecCCCHHHHHHHHHH
Q 007850 174 FVDG-QHKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i~~ 197 (587)
|++| ....+.|..+.+.|.+||++
T Consensus 86 ~~~g~~~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEEEecCCCCHHHHHHHHhc
Confidence 9999 55567899999999999975
No 22
>PHA02278 thioredoxin-like protein
Probab=99.78 E-value=2.4e-18 Score=138.42 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=81.2
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc----HHHHHHcCCCCCcEEEEEe
Q 007850 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~ 175 (587)
..+|++.+.++++++|.|||+||+||+.+.|.|+++++++.. .+.|+.||++.+ +.++++|+|.++||+++|+
T Consensus 4 ~~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~---~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI---KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC---CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 567888888899999999999999999999999999987544 467899999876 6899999999999999999
Q ss_pred CC-eeeEeecCCCHHHHHHH
Q 007850 176 DG-QHKAYNGGRTKDAIVTW 194 (587)
Q Consensus 176 ~g-~~~~~~g~~~~~~l~~~ 194 (587)
+| ...++.|..+.+.|.++
T Consensus 81 ~G~~v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVKKYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEEEEeCCCCHHHHHhh
Confidence 99 66788898888888765
No 23
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.78 E-value=2.1e-18 Score=143.07 Aligned_cols=98 Identities=48% Similarity=0.857 Sum_probs=89.1
Q ss_pred eEEcChhhHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC--cHHHHHHcCCCCCcEE
Q 007850 95 VVVLKERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTI 171 (587)
Q Consensus 95 v~~l~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~ 171 (587)
|++++..+|++.+. .+++++|.|||+||++|+++.|.|.++++.+.+ .+.++.|||+. ++.+|++|+|.++||+
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~---~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~ 78 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG---LVQVAAVDCDEDKNKPLCGKYGVQGFPTL 78 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC---CceEEEEecCccccHHHHHHcCCCcCCEE
Confidence 67899999999874 467799999999999999999999999999876 68999999998 8899999999999999
Q ss_pred EEEeCCe------eeEeecCCCHHHHHHHH
Q 007850 172 YFFVDGQ------HKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 172 ~~~~~g~------~~~~~g~~~~~~l~~~i 195 (587)
++|++|. ...|.|.++.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 79 KVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred EEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9998773 46899999999999997
No 24
>PRK10996 thioredoxin 2; Provisional
Probab=99.77 E-value=6.7e-18 Score=145.21 Aligned_cols=105 Identities=28% Similarity=0.657 Sum_probs=96.3
Q ss_pred CCCeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007850 92 DKDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (587)
Q Consensus 92 ~~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (587)
++.++.++..+|+.+++++++++|+||++||++|+.+.|.|.++++++.+ ++.++.||+++++.++++|+|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~---~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG---KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC---CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 44578899999999998899999999999999999999999999998776 699999999999999999999999999
Q ss_pred EEEeCC-eeeEeecCCCHHHHHHHHHHhc
Q 007850 172 YFFVDG-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 172 ~~~~~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
++|++| ....+.|..+.+.|.+|+.+.+
T Consensus 111 ii~~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 111 MIFKNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred EEEECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 999999 5668899999999999998753
No 25
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.77 E-value=2e-18 Score=139.32 Aligned_cols=89 Identities=22% Similarity=0.356 Sum_probs=77.9
Q ss_pred hhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 100 ERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 100 ~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
..+|++.+. .+++++|.|||+||+||+.+.|.|+++++++.+ .+.|+.||++++++++.+|+|.++||+++|++|
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~---~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G 78 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN---FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRN 78 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC---ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECC
Confidence 456777775 578999999999999999999999999999876 689999999999999999999999999999999
Q ss_pred -eeeEeecCCCHHHH
Q 007850 178 -QHKAYNGGRTKDAI 191 (587)
Q Consensus 178 -~~~~~~g~~~~~~l 191 (587)
...+..|..+...|
T Consensus 79 ~~v~~~~G~~~~~~~ 93 (114)
T cd02954 79 KHMKIDLGTGNNNKI 93 (114)
T ss_pred EEEEEEcCCCCCceE
Confidence 55667776665544
No 26
>PRK09381 trxA thioredoxin; Provisional
Probab=99.77 E-value=5.9e-18 Score=140.12 Aligned_cols=104 Identities=24% Similarity=0.607 Sum_probs=94.3
Q ss_pred CCeEEcChhhHHH-HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007850 93 KDVVVLKERNFSD-VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (587)
Q Consensus 93 ~~v~~l~~~~~~~-~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (587)
..|+++++.+|.+ ++..+++++|+||++||++|+.+.|.|+++++.+.+ ++.++.|||+..+.++++|+|.++||+
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~Pt~ 79 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG---KLTVAKLNIDQNPGTAPKYGIRGIPTL 79 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC---CcEEEEEECCCChhHHHhCCCCcCCEE
Confidence 4588899999996 456688999999999999999999999999999876 699999999999999999999999999
Q ss_pred EEEeCC-eeeEeecCCCHHHHHHHHHHhc
Q 007850 172 YFFVDG-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 172 ~~~~~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
++|++| ...++.|..+.+.|..+|...+
T Consensus 80 ~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 80 LLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 999999 5568889999999999998765
No 27
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.77 E-value=3.2e-18 Score=140.12 Aligned_cols=101 Identities=17% Similarity=0.230 Sum_probs=89.1
Q ss_pred CCceEEEcCcchhHHh--hcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-ccCCCCcC
Q 007850 433 DGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-HRAKSDGF 507 (587)
Q Consensus 433 ~~~~~~l~~~~f~~~v--~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~-~~~~i~~~ 507 (587)
...+..++.++|++.+ .+.++.++|.|||+||++|+.+.|.|+++++.+++ .+.++++|++.+. + .+++|+++
T Consensus 8 ~~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~--~v~~~~Vd~d~~~~l~~~~~~I~~~ 85 (113)
T cd03006 8 RSPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSD--QVLFVAINCWWPQGKCRKQKHFFYF 85 (113)
T ss_pred CCCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CeEEEEEECCCChHHHHHhcCCccc
Confidence 4578999999999973 57889999999999999999999999999999976 5889999998765 5 47999999
Q ss_pred cEEEEEeCCCcccCccccccccCHHHHHHHH
Q 007850 508 PTILFFPAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 508 Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
||+++|++|+.. .+|.|.++.+.|..|+
T Consensus 86 PTl~lf~~g~~~---~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 86 PVIHLYYRSRGP---IEYKGPMRAPYMEKFV 113 (113)
T ss_pred CEEEEEECCccc---eEEeCCCCHHHHHhhC
Confidence 999999988764 4899999999998874
No 28
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=8.5e-19 Score=145.17 Aligned_cols=105 Identities=23% Similarity=0.397 Sum_probs=93.7
Q ss_pred CceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCCcCcEEE
Q 007850 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSDGFPTIL 511 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~i~~~Pt~~ 511 (587)
..+..++.++|++.|.+++.||+|.|||+||++|+.+.|.+++++..+.+ .+.++++|.+.. .+.+|+|.++||++
T Consensus 43 ~~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g--~~k~~kvdtD~~~ela~~Y~I~avPtvl 120 (150)
T KOG0910|consen 43 TLFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAG--KFKLYKVDTDEHPELAEDYEISAVPTVL 120 (150)
T ss_pred ccccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcC--eEEEEEEccccccchHhhcceeeeeEEE
Confidence 35677889999999999999999999999999999999999999999977 577777777664 46899999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhhCC
Q 007850 512 FFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
+|++|.+.. ++.|..+.+.|.++|++...
T Consensus 121 vfknGe~~d---~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 121 VFKNGEKVD---RFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred EEECCEEee---eecccCCHHHHHHHHHHHhc
Confidence 999999876 89999999999999998754
No 29
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.77 E-value=5.4e-18 Score=139.38 Aligned_cols=100 Identities=45% Similarity=0.893 Sum_probs=91.4
Q ss_pred eEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC--cHHHHHHcCCCCCcEEE
Q 007850 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTIY 172 (587)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~ 172 (587)
|+.++..+|+..+.++++++|+||++||++|+++.|.+.++++.+... ..+.++.+||+. +..++++++|+++||++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKED-GKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhC-CceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 678899999999999999999999999999999999999999988742 258999999998 89999999999999999
Q ss_pred EEeCC-eeeEeecCCCHHHHHHHH
Q 007850 173 FFVDG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 173 ~~~~g-~~~~~~g~~~~~~l~~~i 195 (587)
+|++| ....|.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVEKYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeEEeCCCCCHHHHHhhC
Confidence 99999 578999999999998875
No 30
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.76 E-value=6.3e-18 Score=138.65 Aligned_cols=99 Identities=49% Similarity=0.859 Sum_probs=90.5
Q ss_pred CeEEcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007850 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (587)
+|.++++.+|++.+.+ +++++|.||++||++|+++.|.|.++++.+.+ .+.++.+||++++.++++++|+++|+++
T Consensus 1 ~v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~---~~~~~~id~~~~~~~~~~~~i~~~P~~~ 77 (103)
T cd03001 1 DVVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG---IVKVGAVDADVHQSLAQQYGVRGFPTIK 77 (103)
T ss_pred CeEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC---CceEEEEECcchHHHHHHCCCCccCEEE
Confidence 3678999999998744 55699999999999999999999999998876 6999999999999999999999999999
Q ss_pred EEeCC--eeeEeecCCCHHHHHHHH
Q 007850 173 FFVDG--QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 173 ~~~~g--~~~~~~g~~~~~~l~~~i 195 (587)
+|++| ....|.|.++.+.|.+|+
T Consensus 78 ~~~~~~~~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 78 VFGAGKNSPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred EECCCCcceeecCCCCCHHHHHHHh
Confidence 99988 667999999999999997
No 31
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.76 E-value=6e-18 Score=138.58 Aligned_cols=97 Identities=40% Similarity=0.783 Sum_probs=86.3
Q ss_pred hhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeee
Q 007850 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHK 180 (587)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~ 180 (587)
++|+++ .++++++|.|||+||++|+.+.|.|.++++.+++.+..+.++.+||+..+.++++++|.++||+++|++|...
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~~ 85 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLAY 85 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCce
Confidence 566664 3567999999999999999999999999999876445699999999999999999999999999999888667
Q ss_pred EeecCCCHHHHHHHHHHh
Q 007850 181 AYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 181 ~~~g~~~~~~l~~~i~~~ 198 (587)
.|.|..+.+.|.+|+++.
T Consensus 86 ~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 86 NYRGPRTKDDIVEFANRV 103 (104)
T ss_pred eecCCCCHHHHHHHHHhh
Confidence 899999999999999864
No 32
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.76 E-value=8e-18 Score=135.92 Aligned_cols=91 Identities=30% Similarity=0.590 Sum_probs=82.0
Q ss_pred hHHHHH-hC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-e
Q 007850 102 NFSDVI-EN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-Q 178 (587)
Q Consensus 102 ~~~~~~-~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~ 178 (587)
+|++.+ +. +++++|+||++||++|+.+.|.|.++++.+.+ .+.++.|||+..+.++++|+|.++||+++|++| .
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG---QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC---cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 566666 33 67999999999999999999999999999876 689999999999999999999999999999999 5
Q ss_pred eeEeecCCCHHHHHHHH
Q 007850 179 HKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 179 ~~~~~g~~~~~~l~~~i 195 (587)
...+.|..+.+.|..|+
T Consensus 79 ~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 79 VDGFQGAQPEEQLRQML 95 (96)
T ss_pred eeeecCCCCHHHHHHHh
Confidence 56899999999999887
No 33
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.76 E-value=5.8e-18 Score=139.71 Aligned_cols=100 Identities=33% Similarity=0.636 Sum_probs=87.9
Q ss_pred CeEEcChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-cHHHHHH-cCCCCC
Q 007850 94 DVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-ENELAHE-YDVQGF 168 (587)
Q Consensus 94 ~v~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~-~~i~~~ 168 (587)
.|++++.++|+.++ +.+++++|.||++||++|+++.|.|.++++.+++ .++.++.|||+. ...+|.+ ++|.++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~--~~~~~~~vd~d~~~~~~~~~~~~v~~~ 79 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG--SNVKVAKFNADGEQREFAKEELQLKSF 79 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc--CCeEEEEEECCccchhhHHhhcCCCcC
Confidence 47899999999887 3578999999999999999999999999999875 359999999997 5778874 899999
Q ss_pred cEEEEEeCC--eeeEeecC-CCHHHHHHHH
Q 007850 169 PTIYFFVDG--QHKAYNGG-RTKDAIVTWI 195 (587)
Q Consensus 169 Pt~~~~~~g--~~~~~~g~-~~~~~l~~~i 195 (587)
||+++|++| ....|.|. ++.+.|..||
T Consensus 80 Pti~~f~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 80 PTILFFPKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred CEEEEEcCCCCCceeccCCCCCHHHHHhhC
Confidence 999999866 67889995 8999998885
No 34
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.76 E-value=4.1e-18 Score=138.06 Aligned_cols=98 Identities=30% Similarity=0.503 Sum_probs=86.1
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEEC--CCCh---hhhhhhHHHHHHHHHhhhcCCcEEEEEEeC-----CCcHHHHHHc
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYA--PWCG---HCQALAPEYAAAATELKSANESVVLAKVDA-----TEENELAHEY 163 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a--~wC~---~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~-----~~~~~l~~~~ 163 (587)
.++.|+..||++++.+++.+||.||| |||+ +|+++.|.+.+.+. .|.++.||| .++.+||++|
T Consensus 2 g~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~-------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD-------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC-------ceEEEEEecccccchhhHHHHHHh
Confidence 57899999999999999999999999 8898 77777777766543 489999999 4678899999
Q ss_pred CCC--CCcEEEEEeCC---eeeEeecC-CCHHHHHHHHHHh
Q 007850 164 DVQ--GFPTIYFFVDG---QHKAYNGG-RTKDAIVTWIKKK 198 (587)
Q Consensus 164 ~i~--~~Pt~~~~~~g---~~~~~~g~-~~~~~l~~~i~~~ 198 (587)
+|+ +|||+++|++| ....|.|. ++.+.|.+||.+.
T Consensus 75 ~I~~~gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999988 35789997 9999999999875
No 35
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.76 E-value=9.8e-18 Score=136.60 Aligned_cols=94 Identities=18% Similarity=0.348 Sum_probs=79.6
Q ss_pred ChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH---HHHHHcCCCCCcEEEE
Q 007850 99 KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---ELAHEYDVQGFPTIYF 173 (587)
Q Consensus 99 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~ 173 (587)
+.++|++.+.. +++++|+|||+||++|+.++|.|.++++.+ . ++.|+.||++++. .++++|+|.++||+++
T Consensus 2 ~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~ 77 (103)
T cd02985 2 SVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-N---DVVFLLVNGDENDSTMELCRREKIIEVPHFLF 77 (103)
T ss_pred CHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-C---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEE
Confidence 35678887753 899999999999999999999999999988 3 5899999998874 7999999999999999
Q ss_pred EeCC-eeeEeecCCCHHHHHHHHHH
Q 007850 174 FVDG-QHKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i~~ 197 (587)
|++| ...++.| ...+.|.+.+.+
T Consensus 78 ~~~G~~v~~~~G-~~~~~l~~~~~~ 101 (103)
T cd02985 78 YKDGEKIHEEEG-IGPDELIGDVLY 101 (103)
T ss_pred EeCCeEEEEEeC-CCHHHHHHHHHh
Confidence 9999 5678888 445677666544
No 36
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.76 E-value=1.2e-17 Score=135.82 Aligned_cols=96 Identities=20% Similarity=0.464 Sum_probs=83.9
Q ss_pred cChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
-+.++|+.+++.+++++|+|||+||++|+.+.|.|.++++.+++ ..+.|+.+|++ ...++++|+|+++||+++|++|
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~--~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~~~g 81 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD--DLLHFATAEAD-TIDTLKRYRGKCEPTFLFYKNG 81 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC--CcEEEEEEeCC-CHHHHHHcCCCcCcEEEEEECC
Confidence 46789999998899999999999999999999999999998864 24889999998 7789999999999999999999
Q ss_pred e-eeEeecCCCHHHHHHHHHH
Q 007850 178 Q-HKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 178 ~-~~~~~g~~~~~~l~~~i~~ 197 (587)
. ..+..| .+.+.+.++|.+
T Consensus 82 ~~~~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 82 ELVAVIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEEEEEec-CChHHHHHHHhh
Confidence 4 456666 588888888764
No 37
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.75 E-value=1e-17 Score=137.17 Aligned_cols=100 Identities=55% Similarity=0.986 Sum_probs=91.6
Q ss_pred cChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
|++++|++.+.++++++|+||++||++|+.+.|.|.++++.+++.+ ++.++.+||++++.++++|+|.++|++++|++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDP-DIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCC-ceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 5678999998889999999999999999999999999999887632 699999999999999999999999999999977
Q ss_pred -eeeEeecCCCHHHHHHHHHHh
Q 007850 178 -QHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 178 -~~~~~~g~~~~~~l~~~i~~~ 198 (587)
....|.|.++.+.|..||.+.
T Consensus 80 ~~~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 KKPVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred CcceeecCCCCHHHHHHHHHhc
Confidence 578999999999999999875
No 38
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.74 E-value=1.2e-17 Score=137.03 Aligned_cols=101 Identities=32% Similarity=0.645 Sum_probs=93.2
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFF 513 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~ 513 (587)
|..++.++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+.+ ++.++.+|++.+. +.+++|.++||+++|
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~--~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD--NVKFAKVDCDENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT--TSEEEEEETTTSHHHHHHTTCSSSSEEEEE
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceeccccccccc--ccccchhhhhccchhhhccCCCCCCEEEEE
Confidence 467899999999977789999999999999999999999999999987 7999999998775 589999999999999
Q ss_pred eCCCcccCccccccccCHHHHHHHHHhh
Q 007850 514 PAGNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
++|+... +|.|..+.+.|.+||++|
T Consensus 79 ~~g~~~~---~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK---RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE---EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE---EEECCCCHHHHHHHHHcC
Confidence 9999875 999999999999999986
No 39
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.74 E-value=5.4e-17 Score=139.83 Aligned_cols=90 Identities=20% Similarity=0.445 Sum_probs=79.4
Q ss_pred CCeEEcChhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCC---
Q 007850 93 KDVVVLKERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG--- 167 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--- 167 (587)
..+..++.++|++.+. .+++++|+|||+||++|+.+.|.|+++++++++ .++.|+.||++++++++++|+|.+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~--~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN--NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc--CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 3578889999998874 356899999999999999999999999998865 359999999999999999999988
Q ss_pred ---CcEEEEEeCC-eeeEeec
Q 007850 168 ---FPTIYFFVDG-QHKAYNG 184 (587)
Q Consensus 168 ---~Pt~~~~~~g-~~~~~~g 184 (587)
+||+++|++| ...++.|
T Consensus 106 v~~~PT~ilf~~Gk~v~r~~G 126 (152)
T cd02962 106 SKQLPTIILFQGGKEVARRPY 126 (152)
T ss_pred cCCCCEEEEEECCEEEEEEec
Confidence 9999999999 5567775
No 40
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.73 E-value=1.9e-17 Score=134.90 Aligned_cols=97 Identities=25% Similarity=0.547 Sum_probs=86.0
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 512 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~ 512 (587)
.+..++.++|++.+ ..+++++|+||++||++|+.+.|.|.++++.+++ .+.++.+|++.+. +.+++|+++||+++
T Consensus 2 ~~~~l~~~~f~~~v-~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTLDRGDFDAAV-NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDG--VIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEcCHhhHHHHh-cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcC--ceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 46788999999988 5568999999999999999999999999999976 4889999998754 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHH
Q 007850 513 FPAGNKSFDPINVDVDRTVVALYKF 537 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~~~~l~~~ 537 (587)
|++|+... +|.|.++.+.|.+|
T Consensus 79 ~~~g~~~~---~~~G~~~~~~l~~f 100 (101)
T cd03003 79 FPSGMNPE---KYYGDRSKESLVKF 100 (101)
T ss_pred EcCCCCcc---cCCCCCCHHHHHhh
Confidence 99987654 89999999999887
No 41
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2e-16 Score=161.01 Aligned_cols=204 Identities=30% Similarity=0.485 Sum_probs=172.4
Q ss_pred cccEEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCC
Q 007850 324 IKNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE 401 (587)
Q Consensus 324 ~~~~il~~~~~--~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~ 401 (587)
....++.|... .+|+.+...+++++..+++++.++-||+.. +..+|..+++.. .|.+.++..+ .....+.+.
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~---~~~~~~~y~i~g--fPtl~~f~~~-~~~~~~~~~ 120 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDE---HKDLCEKYGIQG--FPTLKVFRPG-KKPIDYSGP 120 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchh---hHHHHHhcCCcc--CcEEEEEcCC-CceeeccCc
Confidence 33445555543 889999999999999999999999999987 679999999976 5999888777 567778889
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcCCCCCCCCCC-ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHH
Q 007850 402 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDG-DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKH 480 (587)
Q Consensus 402 ~t~e~i~~fi~~~~~gkl~~~~ks~~~p~~~~~-~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~ 480 (587)
.+.+.+..|+...+...+..- .. .+..+...+|...+.+.+.+++|.||+|||++|+.+.|.|.+++..
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~----------~~~~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~ 190 (383)
T KOG0191|consen 121 RNAESLAEFLIKELEPSVKKL----------VEGEVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKL 190 (383)
T ss_pred ccHHHHHHHHHHhhccccccc----------cCCceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHH
Confidence 999999999988877555432 22 4888999999999989999999999999999999999999999999
Q ss_pred hcCCCcEEEEEEeCC--ccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhhCCCC
Q 007850 481 LRGVDSIVIAKMDGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 545 (587)
Q Consensus 481 ~~~~~~~~~~~id~~--~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 545 (587)
+.....+.++.+|++ ...+..+.+..+||+.+|+.|.+ -...+.|.++.+.|..|+++.....
T Consensus 191 ~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~--~~~~~~~~R~~~~i~~~v~~~~~~~ 255 (383)
T KOG0191|consen 191 LKSKENVELGKIDATVHKSLASRLEVRGYPTLKLFPPGEE--DIYYYSGLRDSDSIVSFVEKKERRN 255 (383)
T ss_pred hccCcceEEEeeccchHHHHhhhhcccCCceEEEecCCCc--ccccccccccHHHHHHHHHhhcCCC
Confidence 876568999999986 34467899999999999999888 1237888999999999999988775
No 42
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=3.3e-17 Score=134.69 Aligned_cols=103 Identities=61% Similarity=1.093 Sum_probs=91.7
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-ccCCCCcCcEEEEE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTILFF 513 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pt~~~~ 513 (587)
++..+++++|++.+.+.+++++|+||++||++|+.+.|.|.++++.+++...+.++.+|++.+.. ..+++.++||+++|
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~Pt~~~~ 80 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFVVDGFPTILFF 80 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhccCCCCCEEEEE
Confidence 36789999999998787899999999999999999999999999999876679999999988765 46788999999999
Q ss_pred eCCCcccCccccccccCHHHHHHHH
Q 007850 514 PAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
++|++. ...+|.|..+.+.|.+||
T Consensus 81 ~~~~~~-~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 81 PAGDKS-NPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred cCCCcC-CceEccCCcCHHHHHhhC
Confidence 998843 467899999999999986
No 43
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.72 E-value=5e-17 Score=130.16 Aligned_cols=96 Identities=18% Similarity=0.172 Sum_probs=87.5
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCC--ChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPW--CGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~w--C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (587)
..-.++..||++.+..+.+++|.||++| ||+|+.+.|.|.++++++.+ .+.|+.||+++++.++.+|+|+++||+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~---~v~f~kVdid~~~~la~~f~V~sIPTl 87 (111)
T cd02965 11 GWPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG---RFRAAVVGRADEQALAARFGVLRTPAL 87 (111)
T ss_pred CCcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC---cEEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 4556789999999988899999999997 99999999999999999877 689999999999999999999999999
Q ss_pred EEEeCC-eeeEeecCCCHHHHH
Q 007850 172 YFFVDG-QHKAYNGGRTKDAIV 192 (587)
Q Consensus 172 ~~~~~g-~~~~~~g~~~~~~l~ 192 (587)
++|++| ....+.|..+.+++.
T Consensus 88 i~fkdGk~v~~~~G~~~~~e~~ 109 (111)
T cd02965 88 LFFRDGRYVGVLAGIRDWDEYV 109 (111)
T ss_pred EEEECCEEEEEEeCccCHHHHh
Confidence 999999 566888988887765
No 44
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.72 E-value=2.3e-17 Score=135.38 Aligned_cols=100 Identities=28% Similarity=0.585 Sum_probs=87.1
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 512 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~ 512 (587)
.+..++.++|++.+.+++++++|.|||+||++|+.+.|.|.++++.+.+ .+.++.+|++.+. +.+++|+++||+++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 79 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKG--KVKVGSVDCQKYESLCQQANIRAYPTIRL 79 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC--CcEEEEEECCchHHHHHHcCCCcccEEEE
Confidence 3567899999999888888999999999999999999999999999865 5889999998765 47899999999999
Q ss_pred EeCCCcccCccccccccC-HHHHHHHH
Q 007850 513 FPAGNKSFDPINVDVDRT-VVALYKFL 538 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~-~~~l~~~i 538 (587)
|++|++ ...+|.|..+ .++|.+||
T Consensus 80 ~~~g~~--~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 80 YPGNAS--KYHSYNGWHRDADSILEFI 104 (104)
T ss_pred EcCCCC--CceEccCCCCCHHHHHhhC
Confidence 998833 2458999887 99999885
No 45
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.72 E-value=5.5e-17 Score=133.35 Aligned_cols=100 Identities=48% Similarity=0.918 Sum_probs=88.1
Q ss_pred CeEEcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007850 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (587)
.|..|++.+|++.+.+ +++++|+||++||++|+.+.|.|.++++.+++ ...+.++.+||+.+ +++..+++.++||++
T Consensus 1 ~v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~ 78 (104)
T cd02995 1 PVKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKG-DDNVVIAKMDATAN-DVPSEFVVDGFPTIL 78 (104)
T ss_pred CeEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcC-CCCEEEEEEeCcch-hhhhhccCCCCCEEE
Confidence 3788999999998754 58999999999999999999999999998866 23699999999987 688899999999999
Q ss_pred EEeCCe---eeEeecCCCHHHHHHHH
Q 007850 173 FFVDGQ---HKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 173 ~~~~g~---~~~~~g~~~~~~l~~~i 195 (587)
+|.+|. ..+|.|..+.+.|.+||
T Consensus 79 ~~~~~~~~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 79 FFPAGDKSNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred EEcCCCcCCceEccCCcCHHHHHhhC
Confidence 998773 57899999999999885
No 46
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.72 E-value=4.8e-17 Score=134.00 Aligned_cols=100 Identities=49% Similarity=0.955 Sum_probs=89.2
Q ss_pred eEEcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-cHHHHHHcCCCCCcEEE
Q 007850 95 VVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-ENELAHEYDVQGFPTIY 172 (587)
Q Consensus 95 v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~~~l~~~~~i~~~Pt~~ 172 (587)
+.++++.+|++.+.. +++++|.||++||++|+++.|.|.++++.++. ..++.++.+||+. .+.+|++++|.++|+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~ 80 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFAN-EDDVVIAKVDADEANKDLAKKYGVSGFPTLK 80 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCC-CCCEEEEEEECCCcchhhHHhCCCCCcCEEE
Confidence 678899999998864 45899999999999999999999999999873 2369999999999 89999999999999999
Q ss_pred EEeCC--eeeEeecCCCHHHHHHHH
Q 007850 173 FFVDG--QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 173 ~~~~g--~~~~~~g~~~~~~l~~~i 195 (587)
+|.+| ....|.|.++.+.|.+||
T Consensus 81 ~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 81 FFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EEeCCCCCccccCCccCHHHHHhhC
Confidence 99866 667899999999998885
No 47
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.71 E-value=5.1e-17 Score=134.14 Aligned_cols=101 Identities=25% Similarity=0.496 Sum_probs=87.4
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC----CcEEEEEEeCCccc--cccCCCCcCc
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV----DSIVIAKMDGTTNE--HHRAKSDGFP 508 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~----~~~~~~~id~~~~~--~~~~~i~~~P 508 (587)
.+..+++++|++.+ +.+++++|.|||+||++|+++.|.|+++++.+++. ..+.++.+|++.+. +.+++|+++|
T Consensus 2 ~v~~l~~~~f~~~i-~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~P 80 (108)
T cd02996 2 EIVSLTSGNIDDIL-QSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKYP 80 (108)
T ss_pred ceEEcCHhhHHHHH-hcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcCC
Confidence 46788999999976 67889999999999999999999999999887532 25899999998765 4789999999
Q ss_pred EEEEEeCCCcccCccccccccCHHHHHHHH
Q 007850 509 TILFFPAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 509 t~~~~~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
|+++|++|+.. ...|.|.++.+.|.+||
T Consensus 81 tl~~~~~g~~~--~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 81 TLKLFRNGMMM--KREYRGQRSVEALAEFV 108 (108)
T ss_pred EEEEEeCCcCc--ceecCCCCCHHHHHhhC
Confidence 99999999853 35899999999999986
No 48
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.69 E-value=1.2e-16 Score=130.48 Aligned_cols=98 Identities=51% Similarity=0.969 Sum_probs=88.7
Q ss_pred EcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007850 97 VLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (587)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (587)
+++.++|.+.+.++++++|.||++||++|+.+.|.|.++++.++. +..+.++.|||+++..++++|+|+++||+++|++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKG-DGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhcc-CCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 578899999998888999999999999999999999999999841 1379999999999999999999999999999986
Q ss_pred C--eeeEeecCCCHHHHHHHH
Q 007850 177 G--QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 177 g--~~~~~~g~~~~~~l~~~i 195 (587)
| ...+|.|..+.+.+.+|+
T Consensus 81 ~~~~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSKEPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCcccccCCCCcCHHHHHhhC
Confidence 6 778999999999998874
No 49
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.69 E-value=4e-16 Score=127.48 Aligned_cols=99 Identities=32% Similarity=0.687 Sum_probs=87.9
Q ss_pred cChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007850 98 LKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (587)
Q Consensus 98 l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (587)
++.++|.+.+.. +++++|.||++||++|+.+.|.|.++++.+.+ ++.|+.||++.++.++++|+|.++|++++|++
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~ 77 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG---KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKN 77 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC---CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeC
Confidence 356778887755 56999999999999999999999999988865 69999999999999999999999999999998
Q ss_pred C-eeeEeecCCCHHHHHHHHHHhc
Q 007850 177 G-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 177 g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
| ....+.|..+.+.+.+|+++.+
T Consensus 78 g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 78 GKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred CcEeeeecCCCCHHHHHHHHHhhC
Confidence 8 5568889999999999998753
No 50
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.69 E-value=3.5e-16 Score=129.63 Aligned_cols=99 Identities=31% Similarity=0.624 Sum_probs=81.9
Q ss_pred CeEEcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC--cHHHHHHcCCCCCcE
Q 007850 94 DVVVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPT 170 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt 170 (587)
.+++++..+|++.+.+ +++++|+||++||++|+.+.|.|+++++.+++....+.|+.|||+. +..+|++|+|+++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 5789999999998855 4699999999999999999999999999987644459999999964 568999999999999
Q ss_pred EEEEeCCe-----eeEeecC-CCHHHHH
Q 007850 171 IYFFVDGQ-----HKAYNGG-RTKDAIV 192 (587)
Q Consensus 171 ~~~~~~g~-----~~~~~g~-~~~~~l~ 192 (587)
+++|++|. ...|.|+ +..+.+.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 109 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELR 109 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHH
Confidence 99998772 2356665 5555553
No 51
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.69 E-value=1.4e-16 Score=131.09 Aligned_cols=104 Identities=15% Similarity=0.091 Sum_probs=90.7
Q ss_pred CceEEEcCcchhHHhhcCCCcEEEEEeCCCChh--hh--hhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcC
Q 007850 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGH--CQ--AFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGF 507 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~--C~--~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~ 507 (587)
..+..++.+||++.|.+.+.+++++||++||++ |+ .+.|.+.+++..+-...++.++++|++.+. +.+|+|+++
T Consensus 9 ~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~i 88 (120)
T cd03065 9 DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEE 88 (120)
T ss_pred cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCccc
Confidence 467889999999999888899999999999987 99 899999999998722236899999998765 589999999
Q ss_pred cEEEEEeCCCcccCccccccccCHHHHHHHHHhh
Q 007850 508 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 508 Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
||+++|++|+.+ .|.|.++.+.|.+||.+.
T Consensus 89 PTl~lfk~G~~v----~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 89 DSIYVFKDDEVI----EYDGEFAADTLVEFLLDL 118 (120)
T ss_pred cEEEEEECCEEE----EeeCCCCHHHHHHHHHHH
Confidence 999999999764 599999999999999864
No 52
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.69 E-value=3.7e-16 Score=129.80 Aligned_cols=88 Identities=20% Similarity=0.372 Sum_probs=78.6
Q ss_pred CCeEEcChhhHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCc
Q 007850 93 KDVVVLKERNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (587)
+.+.+++.++|.+.+.+. ++++|.||++||++|+.+.|.|+++++++.+ +.|+.||+++. .++++|+|.++|
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~----v~f~~vd~~~~-~l~~~~~i~~~P 78 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE----TKFVKINAEKA-FLVNYLDIKVLP 78 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC----cEEEEEEchhh-HHHHhcCCCcCC
Confidence 468889999999888654 8999999999999999999999999998754 89999999988 999999999999
Q ss_pred EEEEEeCC-eeeEeecC
Q 007850 170 TIYFFVDG-QHKAYNGG 185 (587)
Q Consensus 170 t~~~~~~g-~~~~~~g~ 185 (587)
|+++|++| ...++.|.
T Consensus 79 t~~~f~~G~~v~~~~G~ 95 (113)
T cd02957 79 TLLVYKNGELIDNIVGF 95 (113)
T ss_pred EEEEEECCEEEEEEecH
Confidence 99999999 55677773
No 53
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.68 E-value=4.7e-16 Score=134.07 Aligned_cols=98 Identities=23% Similarity=0.436 Sum_probs=84.5
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc--HHHHHHcCCCCCcEEEEEe-C
Q 007850 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV-D 176 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~-~ 176 (587)
...++..+..+++++|+|||+||++|+.+.|.|.++++.+.+ .+.|+.||++.. ..++++|+|.++||+++|+ +
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~---~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~ 86 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD---QVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDRE 86 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc---CeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCC
Confidence 456778888899999999999999999999999999998866 466777766644 5889999999999999995 7
Q ss_pred C-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 177 G-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 177 g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
| ...++.|..+.+.|.++|.+.+.
T Consensus 87 G~~v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 87 GNEEGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHc
Confidence 8 66788999999999999998874
No 54
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.68 E-value=2.6e-16 Score=129.00 Aligned_cols=92 Identities=26% Similarity=0.406 Sum_probs=81.7
Q ss_pred hhHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhhcCCcEEEEEEeCCC----cHHHHHHcCCCCCcEEEE
Q 007850 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 173 (587)
+.|.++++++++++|.||++||++|+.+.|.+ .++++.+.+ ++.++.||+++ ...++++|+|.++||+++
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK---DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC---CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 46788888999999999999999999999988 578877765 69999999987 578999999999999999
Q ss_pred Ee--CC-eeeEeecCCCHHHHHHHH
Q 007850 174 FV--DG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 174 ~~--~g-~~~~~~g~~~~~~l~~~i 195 (587)
|+ +| ...++.|.++.+.|.++|
T Consensus 79 ~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 79 YGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ECCCCCCCCcccccccCHHHHHHHh
Confidence 98 67 668899999999998876
No 55
>PRK09381 trxA thioredoxin; Provisional
Probab=99.67 E-value=3.5e-16 Score=129.51 Aligned_cols=104 Identities=25% Similarity=0.506 Sum_probs=91.7
Q ss_pred CceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--ccCCCCcCcEEE
Q 007850 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTIL 511 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~i~~~Pt~~ 511 (587)
+.+..+++.+|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+.+ .+.++.+|++.+.. .+++++++||++
T Consensus 3 ~~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~Pt~~ 80 (109)
T PRK09381 3 DKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQG--KLTVAKLNIDQNPGTAPKYGIRGIPTLL 80 (109)
T ss_pred CcceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCC--CcEEEEEECCCChhHHHhCCCCcCCEEE
Confidence 45788899999998878889999999999999999999999999999976 47788888876553 689999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 512 FFPAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
+|++|+.+. ++.|..+.++|.+||.+++
T Consensus 81 ~~~~G~~~~---~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 81 LFKNGEVAA---TKVGALSKGQLKEFLDANL 108 (109)
T ss_pred EEeCCeEEE---EecCCCCHHHHHHHHHHhc
Confidence 999998765 7889889999999999875
No 56
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=4.1e-16 Score=125.31 Aligned_cols=84 Identities=37% Similarity=0.739 Sum_probs=73.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeEeecCCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNGGRT 187 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g~~~ 187 (587)
.+++++|.|||+||+||+.+.|.|.+++.+|.+ +.|+.||+++..+++++++|...||+++|++| ...++.|...
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~----v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~~~vGa~~ 95 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD----VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVDEVVGANK 95 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC----CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEEEEecCCH
Confidence 469999999999999999999999999999876 99999999999999999999999999999999 6667777654
Q ss_pred HHHHHHHHHH
Q 007850 188 KDAIVTWIKK 197 (587)
Q Consensus 188 ~~~l~~~i~~ 197 (587)
. .+.+.+..
T Consensus 96 ~-~l~~~i~~ 104 (106)
T KOG0907|consen 96 A-ELEKKIAK 104 (106)
T ss_pred H-HHHHHHHh
Confidence 4 66655543
No 57
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.67 E-value=9.1e-16 Score=129.04 Aligned_cols=98 Identities=19% Similarity=0.307 Sum_probs=82.2
Q ss_pred ChhhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEE-EEe
Q 007850 99 KERNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY-FFV 175 (587)
Q Consensus 99 ~~~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~-~~~ 175 (587)
+..+|++.+. ++++++|.|||+||+||+.+.|.|.++++++++ .+.|+.||+++.++++..|+|++.|+++ +|+
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~---~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk 86 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN---FAVIYLVDITEVPDFNTMYELYDPCTVMFFFR 86 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC---ceEEEEEECCCCHHHHHHcCccCCCcEEEEEE
Confidence 4678888774 578999999999999999999999999999876 6888999999999999999999887766 889
Q ss_pred CC--eeeEeec--------CCCHHHHHHHHHHhc
Q 007850 176 DG--QHKAYNG--------GRTKDAIVTWIKKKI 199 (587)
Q Consensus 176 ~g--~~~~~~g--------~~~~~~l~~~i~~~~ 199 (587)
+| ...+..| ..+.++|.+-++..+
T Consensus 87 ~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~ 120 (142)
T PLN00410 87 NKHIMIDLGTGNNNKINWALKDKQEFIDIVETVY 120 (142)
T ss_pred CCeEEEEEecccccccccccCCHHHHHHHHHHHH
Confidence 98 4456667 466677777666554
No 58
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.67 E-value=3e-16 Score=130.11 Aligned_cols=102 Identities=33% Similarity=0.628 Sum_probs=87.3
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--c--ccccCCCCcCcEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--N--EHHRAKSDGFPTIL 511 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~--~~~~~~i~~~Pt~~ 511 (587)
+..++.++|++.+.+.+++++|.||++||++|+.+.|.|.++++.+.+ .+.++.+|++. + .+..++|.++||++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~ 79 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG--LVQVAAVDCDEDKNKPLCGKYGVQGFPTLK 79 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC--CceEEEEecCccccHHHHHHcCCCcCCEEE
Confidence 578999999999988888999999999999999999999999999875 47778888876 3 24689999999999
Q ss_pred EEeCCCcc--cCccccccccCHHHHHHHHH
Q 007850 512 FFPAGNKS--FDPINVDVDRTVVALYKFLK 539 (587)
Q Consensus 512 ~~~~~~~~--~~~~~~~g~~~~~~l~~~i~ 539 (587)
+|++|++. ..+..|.|.++.+.|.+||.
T Consensus 80 ~~~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 80 VFRPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred EEeCCCcccccccccccCccCHHHHHHHhC
Confidence 99988731 13468999999999999983
No 59
>PHA02278 thioredoxin-like protein
Probab=99.66 E-value=1.7e-16 Score=127.78 Aligned_cols=91 Identities=13% Similarity=0.180 Sum_probs=74.6
Q ss_pred CcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc------ccccCCCCcCcEEEEEe
Q 007850 441 GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------EHHRAKSDGFPTILFFP 514 (587)
Q Consensus 441 ~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------~~~~~~i~~~Pt~~~~~ 514 (587)
.++|.+.+ ..+++++|+|||+||++|+.+.|.++++++.+.. .+.++.+|++.+ .+.+++|.++||+++|+
T Consensus 4 ~~~~~~~i-~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~--~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk 80 (103)
T PHA02278 4 LVDLNTAI-RQKKDVIVMITQDNCGKCEILKSVIPMFQESGDI--KKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYK 80 (103)
T ss_pred HHHHHHHH-hCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC--CceEEEEECCccccccHHHHHHCCCccccEEEEEE
Confidence 35678877 6789999999999999999999999999987544 244566666643 34789999999999999
Q ss_pred CCCcccCccccccccCHHHHHHH
Q 007850 515 AGNKSFDPINVDVDRTVVALYKF 537 (587)
Q Consensus 515 ~~~~~~~~~~~~g~~~~~~l~~~ 537 (587)
+|+.+. ++.|..+.+.|.++
T Consensus 81 ~G~~v~---~~~G~~~~~~l~~~ 100 (103)
T PHA02278 81 DGQLVK---KYEDQVTPMQLQEL 100 (103)
T ss_pred CCEEEE---EEeCCCCHHHHHhh
Confidence 999886 88898888887765
No 60
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.66 E-value=9e-16 Score=126.75 Aligned_cols=89 Identities=18% Similarity=0.337 Sum_probs=79.1
Q ss_pred CCeEEcCh-hhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007850 93 KDVVVLKE-RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (587)
Q Consensus 93 ~~v~~l~~-~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (587)
+.+..++. .+|.+.+.++++++|.||++||++|+.+.|.|+++++++.+ +.|+.||+++.+.++++|+|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~----i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE----TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC----CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 34667777 89999998889999999999999999999999999988754 89999999999999999999999999
Q ss_pred EEEeCC-eeeEeecC
Q 007850 172 YFFVDG-QHKAYNGG 185 (587)
Q Consensus 172 ~~~~~g-~~~~~~g~ 185 (587)
++|++| ...++.|.
T Consensus 80 l~fk~G~~v~~~~g~ 94 (113)
T cd02989 80 ILFKNGKTVDRIVGF 94 (113)
T ss_pred EEEECCEEEEEEECc
Confidence 999999 44566553
No 61
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.66 E-value=1.2e-15 Score=123.53 Aligned_cols=92 Identities=23% Similarity=0.585 Sum_probs=78.6
Q ss_pred hhhHHHHHhCC--CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 100 ERNFSDVIENN--KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 100 ~~~~~~~~~~~--~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
.++|++.+... ++++|+||++||++|+.+.|.|.++++.+.. .+.++.+|+++.+.++++|+|.++||+++|++|
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~---~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g 78 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFP---SVLFLSIEAEELPEISEKFEITAVPTFVFFRNG 78 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCC---ceEEEEEccccCHHHHHhcCCccccEEEEEECC
Confidence 56788888655 9999999999999999999999999998733 799999999999999999999999999999999
Q ss_pred ee-eEeecCCCHHHHHHHH
Q 007850 178 QH-KAYNGGRTKDAIVTWI 195 (587)
Q Consensus 178 ~~-~~~~g~~~~~~l~~~i 195 (587)
.. .++.| .+.+.|.+.|
T Consensus 79 ~~~~~~~g-~~~~~l~~~~ 96 (97)
T cd02984 79 TIVDRVSG-ADPKELAKKV 96 (97)
T ss_pred EEEEEEeC-CCHHHHHHhh
Confidence 54 45555 4567776654
No 62
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.65 E-value=7.5e-16 Score=125.60 Aligned_cols=98 Identities=26% Similarity=0.457 Sum_probs=83.5
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 512 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~ 512 (587)
.+..++.++|++.+ + + .++|.|||+||++|+.+.|.|.+++..++. .++.++.+|++.+. +.+++|+++||+++
T Consensus 2 ~v~~l~~~~f~~~~-~-~-~~lv~f~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 2 NVVELTDSNWTLVL-E-G-EWMIEFYAPWCPACQQLQPEWEEFADWSDD-LGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred ceEEcChhhHHHHh-C-C-CEEEEEECCCCHHHHHHhHHHHHHHHhhcc-CCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 46789999999876 3 2 389999999999999999999999998654 36889999998754 46899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHHHh
Q 007850 513 FPAGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
|++|.. . +|.|.++.++|.+||++
T Consensus 78 ~~~g~~-~---~~~G~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGVF-R---RYQGPRDKEDLISFIEE 101 (101)
T ss_pred eCCCCE-E---EecCCCCHHHHHHHHhC
Confidence 988863 2 79999999999999864
No 63
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.65 E-value=3.7e-16 Score=129.12 Aligned_cols=100 Identities=19% Similarity=0.350 Sum_probs=84.3
Q ss_pred EEEcCcchhHHhhc--CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCCcCcEEEE
Q 007850 437 KIVVGNNFDEIVLD--ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSDGFPTILF 512 (587)
Q Consensus 437 ~~l~~~~f~~~v~~--~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~i~~~Pt~~~ 512 (587)
..++.++|.+.+.. .+++++|.|||+||++|+.+.|.|.++++.+.+ .++.++.+|++.+ .+.+++|+++||+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~-~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i 85 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEP-LGVGIATVNAGHERRLARKLGAHSVPAIVG 85 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHh-cCceEEEEeccccHHHHHHcCCccCCEEEE
Confidence 34677788876643 678999999999999999999999999999975 2578888888764 457899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHHHh
Q 007850 513 FPAGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
|++|+.+. ++.|..+.+.|.+||.+
T Consensus 86 ~~~g~~~~---~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 86 IINGQVTF---YHDSSFTKQHVVDFVRK 110 (111)
T ss_pred EECCEEEE---EecCCCCHHHHHHHHhc
Confidence 99887653 77899999999999975
No 64
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.65 E-value=1.1e-15 Score=154.37 Aligned_cols=106 Identities=30% Similarity=0.592 Sum_probs=92.2
Q ss_pred CCCCeEEcChhhHHHHHh---CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-HHH-HHcCC
Q 007850 91 DDKDVVVLKERNFSDVIE---NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-ELA-HEYDV 165 (587)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~---~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~-~~~~i 165 (587)
++..|+.|+..||+.++. .++++||.|||+||++|+.+.|.|+++++++++ .++.|+.|||+.+. .++ ++|+|
T Consensus 349 ~~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~--~~v~~~kVdvD~~~~~~~~~~~~I 426 (463)
T TIGR00424 349 DSNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAG--SGVKVAKFRADGDQKEFAKQELQL 426 (463)
T ss_pred CCCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCcEEEEEECCCCccHHHHHHcCC
Confidence 456799999999999885 788999999999999999999999999999876 24899999998763 454 78999
Q ss_pred CCCcEEEEEeCC--eeeEee-cCCCHHHHHHHHHHh
Q 007850 166 QGFPTIYFFVDG--QHKAYN-GGRTKDAIVTWIKKK 198 (587)
Q Consensus 166 ~~~Pt~~~~~~g--~~~~~~-g~~~~~~l~~~i~~~ 198 (587)
.++||+++|++| ....|. |.++.+.|..||+..
T Consensus 427 ~~~PTii~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~~ 462 (463)
T TIGR00424 427 GSFPTILFFPKHSSRPIKYPSEKRDVDSLMSFVNLL 462 (463)
T ss_pred CccceEEEEECCCCCceeCCCCCCCHHHHHHHHHhh
Confidence 999999999988 567897 589999999999753
No 65
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.65 E-value=7.7e-16 Score=127.02 Aligned_cols=101 Identities=32% Similarity=0.678 Sum_probs=85.4
Q ss_pred ceEEEcCcchhHHhh--cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-c--cc-cCCCCcCc
Q 007850 435 DVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-E--HH-RAKSDGFP 508 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~--~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~--~~-~~~i~~~P 508 (587)
.+..++.++|+..+. +.+++++|.||++||++|+.+.|.|.++++.+++ ..+.++.+|++.+ . +. .++++++|
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~-~~~~~~~vd~d~~~~~~~~~~~~v~~~P 80 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAG-SNVKVAKFNADGEQREFAKEELQLKSFP 80 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhcc-CCeEEEEEECCccchhhHHhhcCCCcCC
Confidence 467889999999884 4578999999999999999999999999999985 3588999999863 2 33 58999999
Q ss_pred EEEEEeCCCcccCccccccc-cCHHHHHHHH
Q 007850 509 TILFFPAGNKSFDPINVDVD-RTVVALYKFL 538 (587)
Q Consensus 509 t~~~~~~~~~~~~~~~~~g~-~~~~~l~~~i 538 (587)
|+++|++|.. .+..|.|. ++.+.|..||
T Consensus 81 ti~~f~~~~~--~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 81 TILFFPKNSR--QPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred EEEEEcCCCC--CceeccCCCCCHHHHHhhC
Confidence 9999988765 45689995 8999999885
No 66
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.65 E-value=7.4e-16 Score=126.06 Aligned_cols=98 Identities=33% Similarity=0.658 Sum_probs=84.8
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC-CCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG-VDSIVIAKMDGTTNE--HHRAKSDGFPTILF 512 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~ 512 (587)
+..+++++|+..+.+ ++++|.||++||++|+.+.|.|.++++.+.+ ...+.++.+|++.+. +..++|.++||+++
T Consensus 2 ~~~l~~~~f~~~~~~--~~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 79 (102)
T cd03005 2 VLELTEDNFDHHIAE--GNHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLL 79 (102)
T ss_pred eeECCHHHHHHHhhc--CCEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEE
Confidence 567899999998843 3599999999999999999999999999876 346899999998754 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHH
Q 007850 513 FPAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
|++|+... +|.|..+.+.|.+||
T Consensus 80 ~~~g~~~~---~~~G~~~~~~l~~~i 102 (102)
T cd03005 80 FKDGEKVD---KYKGTRDLDSLKEFV 102 (102)
T ss_pred EeCCCeee---EeeCCCCHHHHHhhC
Confidence 99887653 899999999998885
No 67
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.65 E-value=8.2e-16 Score=124.12 Aligned_cols=93 Identities=20% Similarity=0.407 Sum_probs=81.1
Q ss_pred cchhHHhhcC-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCc
Q 007850 442 NNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 442 ~~f~~~v~~~-~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~ 518 (587)
++|++.+.++ +++++|+||++||++|+.+.|.+.+++..+.+ .+.++.+|++.+. +.+++|.++||+++|++|+.
T Consensus 1 ~~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~ 78 (96)
T cd02956 1 QNFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQG--QFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQP 78 (96)
T ss_pred CChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCEE
Confidence 3688888655 68999999999999999999999999999876 5888999998765 46899999999999998877
Q ss_pred ccCccccccccCHHHHHHHHH
Q 007850 519 SFDPINVDVDRTVVALYKFLK 539 (587)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~~i~ 539 (587)
+. ++.|..+.+.|.+||+
T Consensus 79 ~~---~~~g~~~~~~l~~~l~ 96 (96)
T cd02956 79 VD---GFQGAQPEEQLRQMLD 96 (96)
T ss_pred ee---eecCCCCHHHHHHHhC
Confidence 64 7999999999999874
No 68
>PLN02309 5'-adenylylsulfate reductase
Probab=99.64 E-value=1.8e-15 Score=152.85 Aligned_cols=106 Identities=28% Similarity=0.597 Sum_probs=94.1
Q ss_pred CCCCeEEcChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-CcHHHHH-HcCC
Q 007850 91 DDKDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAH-EYDV 165 (587)
Q Consensus 91 ~~~~v~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~-~~~i 165 (587)
+...|+.++.++|++++ ..++++||+|||+||++|+.+.|.|.++++.+.+ .++.|+.|||+ .+..+|. +|+|
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~--~~V~f~kVD~d~~~~~la~~~~~I 420 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG--SGVKVAKFRADGDQKEFAKQELQL 420 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc--CCeEEEEEECCCcchHHHHhhCCC
Confidence 45679999999999887 4689999999999999999999999999999876 35999999999 7788886 5999
Q ss_pred CCCcEEEEEeCC--eeeEeec-CCCHHHHHHHHHHh
Q 007850 166 QGFPTIYFFVDG--QHKAYNG-GRTKDAIVTWIKKK 198 (587)
Q Consensus 166 ~~~Pt~~~~~~g--~~~~~~g-~~~~~~l~~~i~~~ 198 (587)
.++||+++|++| ....|.| .++.+.|..||+..
T Consensus 421 ~~~PTil~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 421 GSFPTILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ceeeEEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 999999999877 5678985 69999999999864
No 69
>PTZ00051 thioredoxin; Provisional
Probab=99.64 E-value=2e-15 Score=122.34 Aligned_cols=89 Identities=31% Similarity=0.679 Sum_probs=78.0
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-
Q 007850 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG- 177 (587)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g- 177 (587)
+.+++..++..+++++|+||++||++|+.+.|.|.++++.+.+ +.++.||+++...++++|+|.++||+++|++|
T Consensus 7 ~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~----~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~g~ 82 (98)
T PTZ00051 7 SQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK----MVFVKVDVDELSEVAEKENITSMPTFKVFKNGS 82 (98)
T ss_pred CHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC----cEEEEEECcchHHHHHHCCCceeeEEEEEeCCe
Confidence 3568888888899999999999999999999999999987644 89999999999999999999999999999999
Q ss_pred eeeEeecCCCHHHHH
Q 007850 178 QHKAYNGGRTKDAIV 192 (587)
Q Consensus 178 ~~~~~~g~~~~~~l~ 192 (587)
....+.|. ..+.|.
T Consensus 83 ~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 83 VVDTLLGA-NDEALK 96 (98)
T ss_pred EEEEEeCC-CHHHhh
Confidence 55678885 555554
No 70
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.64 E-value=5.5e-16 Score=125.13 Aligned_cols=89 Identities=24% Similarity=0.431 Sum_probs=74.5
Q ss_pred chhHHh-hcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-cc--ccccCCCCcCcEEEEEeCCCc
Q 007850 443 NFDEIV-LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TN--EHHRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 443 ~f~~~v-~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~--~~~~~~i~~~Pt~~~~~~~~~ 518 (587)
++.+.+ ..++++++|.|||+||++|+.+.|.|+++++.+++ +.++.+|.+ .+ .+.+++|.++||+++|++| .
T Consensus 8 ~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~---~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g-~ 83 (100)
T cd02999 8 IALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ---IRHLAIEESSIKPSLLSRYGVVGFPTILLFNST-P 83 (100)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc---CceEEEECCCCCHHHHHhcCCeecCEEEEEcCC-c
Confidence 344444 35678999999999999999999999999999865 678888887 33 3578999999999999988 5
Q ss_pred ccCccccccccCHHHHHHHH
Q 007850 519 SFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~~i 538 (587)
. .+|.|.++.+.|.+||
T Consensus 84 ~---~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 R---VRYNGTRTLDSLAAFY 100 (100)
T ss_pred e---eEecCCCCHHHHHhhC
Confidence 4 3899999999999985
No 71
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=5.8e-16 Score=142.64 Aligned_cols=106 Identities=27% Similarity=0.508 Sum_probs=95.4
Q ss_pred CceEEEcCcchhHHhhcC--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcE
Q 007850 434 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPT 509 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~--~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt 509 (587)
..|..+|..||...|... ..||+|+||+|||++|+.+.|.+++++..+++ .+.++++||+... ...|+|+++||
T Consensus 23 ~~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G--~f~LakvN~D~~p~vAaqfgiqsIPt 100 (304)
T COG3118 23 PGIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG--KFKLAKVNCDAEPMVAAQFGVQSIPT 100 (304)
T ss_pred ccceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCC--ceEEEEecCCcchhHHHHhCcCcCCe
Confidence 348999999999998553 35999999999999999999999999999998 6888888887765 47899999999
Q ss_pred EEEEeCCCcccCccccccccCHHHHHHHHHhhCCC
Q 007850 510 ILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASI 544 (587)
Q Consensus 510 ~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~ 544 (587)
+++|++|+.+. .|.|....+.|++||.++++.
T Consensus 101 V~af~dGqpVd---gF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 101 VYAFKDGQPVD---GFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred EEEeeCCcCcc---ccCCCCcHHHHHHHHHHhcCh
Confidence 99999999987 899999999999999999887
No 72
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.64 E-value=1.6e-15 Score=124.81 Aligned_cols=101 Identities=44% Similarity=0.860 Sum_probs=88.5
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc-cc--cccCCCCcCcEEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-NE--HHRAKSDGFPTILF 512 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~--~~~~~i~~~Pt~~~ 512 (587)
+..+++++|++.+.+.+++++|+||++||++|+.+.|.|..+++.++....+.++.+|++. +. +.+++|.++|++++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~ 81 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKF 81 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEE
Confidence 5678999999988777779999999999999999999999999999855579999999988 44 57899999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHH
Q 007850 513 FPAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
|+.|.. ....|.|..+.++|.+||
T Consensus 82 ~~~~~~--~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 82 FPKGST--EPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred EeCCCC--CccccCCccCHHHHHhhC
Confidence 988754 356899999999999885
No 73
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.64 E-value=3.2e-15 Score=120.61 Aligned_cols=88 Identities=27% Similarity=0.542 Sum_probs=80.1
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeEeec
Q 007850 106 VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNG 184 (587)
Q Consensus 106 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g 184 (587)
+.+.+++++|+||++||++|+.+.|.+.++++++.+ ++.++.+|++++++++.+++|.++|++++|++| ...++.|
T Consensus 9 ~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~---~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~~~~g 85 (97)
T cd02949 9 YHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG---AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVKEISG 85 (97)
T ss_pred HHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC---ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEEEEeC
Confidence 335788999999999999999999999999998865 699999999999999999999999999999999 6678999
Q ss_pred CCCHHHHHHHHH
Q 007850 185 GRTKDAIVTWIK 196 (587)
Q Consensus 185 ~~~~~~l~~~i~ 196 (587)
..+.+.+.+|++
T Consensus 86 ~~~~~~~~~~l~ 97 (97)
T cd02949 86 VKMKSEYREFIE 97 (97)
T ss_pred CccHHHHHHhhC
Confidence 999999988863
No 74
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.63 E-value=1.2e-15 Score=125.02 Aligned_cols=99 Identities=35% Similarity=0.668 Sum_probs=87.3
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFF 513 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~ 513 (587)
+..+++++|.+.+.+.+++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+. +.+++|+++|++++|
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~--~~~~~~id~~~~~~~~~~~~i~~~P~~~~~ 79 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKG--IVKVGAVDADVHQSLAQQYGVRGFPTIKVF 79 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcC--CceEEEEECcchHHHHHHCCCCccCEEEEE
Confidence 568899999999877778899999999999999999999999999876 5888888887665 478999999999999
Q ss_pred eCCCcccCccccccccCHHHHHHHH
Q 007850 514 PAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
++|+. .+..|.|..+.+.|.+|+
T Consensus 80 ~~~~~--~~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 80 GAGKN--SPQDYQGGRTAKAIVSAA 102 (103)
T ss_pred CCCCc--ceeecCCCCCHHHHHHHh
Confidence 98844 467899999999999997
No 75
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.63 E-value=2.4e-14 Score=133.38 Aligned_cols=182 Identities=18% Similarity=0.242 Sum_probs=127.2
Q ss_pred CCeEEEEEEC---CCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-ee-eEeec
Q 007850 110 NKFVMVEFYA---PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QH-KAYNG 184 (587)
Q Consensus 110 ~~~~~v~f~a---~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~-~~~~g 184 (587)
+...++.|++ +||++|+.+.|.++++++.+.. ..+.++.+|.+++++++++|+|.++||+++|++| .. .++.|
T Consensus 19 ~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~~~~~~~~G 96 (215)
T TIGR02187 19 NPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGKDGGIRYTG 96 (215)
T ss_pred CCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCeeeEEEEee
Confidence 4456777888 9999999999999999998843 2466778888799999999999999999999999 43 58999
Q ss_pred CCCHHHHHHHHHHhcCC--CcccccchhHHHHhcccCCeEEEEEecCCCCc----chHHHHHhcccCCceeEEec---CC
Q 007850 185 GRTKDAIVTWIKKKIGP--GIYNITTLDEAERVLTSETKVVLGYLNSLVGS----ESEVLADASRLEDDVNFYQT---TN 255 (587)
Q Consensus 185 ~~~~~~l~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~f~~~a~~~~~~~F~~~---~~ 255 (587)
..+.+.+.+||+..+.- ....+ +.+..+.+......+.|..|....-+ ....+..++.....+.|..+ ..
T Consensus 97 ~~~~~~l~~~i~~~~~~~~~~~~L-~~~~~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~ 175 (215)
T TIGR02187 97 IPAGYEFAALIEDIVRVSQGEPGL-SEKTVELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANEN 175 (215)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCC
Confidence 99999999999887532 22233 22223333344444444434333222 22333444433455666543 46
Q ss_pred hhHHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHh
Q 007850 256 PDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFS 302 (587)
Q Consensus 256 ~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~ 302 (587)
++++.++++.. .|++++++... . + .|....+.+.+||..
T Consensus 176 ~~~~~~~~V~~---vPtl~i~~~~~--~--~-~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 176 PDLAEKYGVMS---VPKIVINKGVE--E--F-VGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHHhCCcc---CCEEEEecCCE--E--E-ECCCCHHHHHHHHHh
Confidence 67899999975 69999886432 1 5 677788899999864
No 76
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.63 E-value=4.3e-16 Score=125.84 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=67.7
Q ss_pred CcchhHHhhc-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCC
Q 007850 441 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGN 517 (587)
Q Consensus 441 ~~~f~~~v~~-~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~ 517 (587)
+++|++.+.. .+++++|.|||+||++|+.|.|.|.+++..+++ .+.|+++|++.+. ...++|.++||+++|++|+
T Consensus 2 ~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~--~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~ 79 (114)
T cd02954 2 GWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSN--FAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK 79 (114)
T ss_pred HHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccC--ceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE
Confidence 4577887753 578999999999999999999999999999876 4778888888765 4789999999999999999
Q ss_pred ccc
Q 007850 518 KSF 520 (587)
Q Consensus 518 ~~~ 520 (587)
.+.
T Consensus 80 ~v~ 82 (114)
T cd02954 80 HMK 82 (114)
T ss_pred EEE
Confidence 875
No 77
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.62 E-value=4.1e-15 Score=118.80 Aligned_cols=77 Identities=19% Similarity=0.346 Sum_probs=68.8
Q ss_pred hhHHHHHh--CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCe
Q 007850 101 RNFSDVIE--NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQ 178 (587)
Q Consensus 101 ~~~~~~~~--~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~ 178 (587)
..|++.+. ++++++|.|||+||+||+.+.|.|.++++++++ .+.|+.||+++.+++++.|+|.+.||++||++|.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~---~~~f~kVDVDev~dva~~y~I~amPtfvffkngk 79 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK---MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQ 79 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC---ceEEEEEeccccHHHHHhcCceeCcEEEEEECCc
Confidence 45666664 589999999999999999999999999999855 4999999999999999999999999999999994
Q ss_pred ee
Q 007850 179 HK 180 (587)
Q Consensus 179 ~~ 180 (587)
..
T Consensus 80 h~ 81 (114)
T cd02986 80 HM 81 (114)
T ss_pred EE
Confidence 43
No 78
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.62 E-value=2e-15 Score=138.75 Aligned_cols=108 Identities=27% Similarity=0.567 Sum_probs=92.3
Q ss_pred CceEEEcCcchhHHhhcC----CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcC
Q 007850 434 GDVKIVVGNNFDEIVLDE----SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGF 507 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~----~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~ 507 (587)
..+..++.++|++.+... +++++|+|||+||++|+.+.|.|+++++.+++ .+.++.+|++.+. +.+++|+++
T Consensus 30 ~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~--~v~~~~VD~~~~~~l~~~~~I~~~ 107 (224)
T PTZ00443 30 NALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKG--QVNVADLDATRALNLAKRFAIKGY 107 (224)
T ss_pred CCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCC--CeEEEEecCcccHHHHHHcCCCcC
Confidence 468899999999988543 57999999999999999999999999999976 5888899987764 578999999
Q ss_pred cEEEEEeCCCcccCccccccccCHHHHHHHHHhhCCCCC
Q 007850 508 PTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPF 546 (587)
Q Consensus 508 Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~ 546 (587)
||+++|++|+... .+.|.++.++|.+|+.++.+...
T Consensus 108 PTl~~f~~G~~v~---~~~G~~s~e~L~~fi~~~~~~~~ 143 (224)
T PTZ00443 108 PTLLLFDKGKMYQ---YEGGDRSTEKLAAFALGDFKKAL 143 (224)
T ss_pred CEEEEEECCEEEE---eeCCCCCHHHHHHHHHHHHHhhc
Confidence 9999999987653 45678999999999999876443
No 79
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.62 E-value=2.1e-15 Score=122.88 Aligned_cols=94 Identities=22% Similarity=0.265 Sum_probs=77.7
Q ss_pred CcchhHHhhcC-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----cccCCCCcCcEEEEEe
Q 007850 441 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----HHRAKSDGFPTILFFP 514 (587)
Q Consensus 441 ~~~f~~~v~~~-~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~~~~~i~~~Pt~~~~~ 514 (587)
.++|++.+.+. +++|+|.|||+||++|+.+.|.|.++++.+. .+.|+.+|++.+. +.+++|+++||+++|+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~---~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~ 79 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCN---DVVFLLVNGDENDSTMELCRREKIIEVPHFLFYK 79 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCC---CCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEe
Confidence 46788887543 7899999999999999999999999999983 4888999987753 3689999999999999
Q ss_pred CCCcccCccccccccCHHHHHHHHHhh
Q 007850 515 AGNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 515 ~~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
+|+.+. ++.| ....+|++-+..+
T Consensus 80 ~G~~v~---~~~G-~~~~~l~~~~~~~ 102 (103)
T cd02985 80 DGEKIH---EEEG-IGPDELIGDVLYY 102 (103)
T ss_pred CCeEEE---EEeC-CCHHHHHHHHHhc
Confidence 998765 7888 5567777776543
No 80
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.61 E-value=3.1e-15 Score=122.39 Aligned_cols=100 Identities=47% Similarity=0.925 Sum_probs=87.5
Q ss_pred EcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCC
Q 007850 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAG 516 (587)
Q Consensus 439 l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~ 516 (587)
|++++|++.+. ++++++|+||++||++|+.+.+.|.+++..+.+...+.++.+|++.+. +.+++|+++|++++|++|
T Consensus 1 l~~~~~~~~~~-~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 1 LTASNFDDIVL-SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred CchhhHHHHhc-cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 46789999875 788999999999999999999999999999887556999999997765 478999999999999988
Q ss_pred CcccCccccccccCHHHHHHHHHhhC
Q 007850 517 NKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
+.. ..|.|..+.+.|..||++++
T Consensus 80 ~~~---~~~~g~~~~~~l~~~i~~~~ 102 (102)
T TIGR01126 80 KKP---VDYEGGRDLEAIVEFVNEKS 102 (102)
T ss_pred Ccc---eeecCCCCHHHHHHHHHhcC
Confidence 753 48999999999999999864
No 81
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.60 E-value=3.2e-15 Score=121.23 Aligned_cols=99 Identities=21% Similarity=0.308 Sum_probs=81.5
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeC--CCCh---hhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-------ccccccC
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYA--PWCG---HCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-------TNEHHRA 502 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~--~~C~---~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-------~~~~~~~ 502 (587)
.+..|+.+||++.| ..++.++|.||| |||+ +|+.+.|.+.+.+. .+.++.+||+ ...+.+|
T Consensus 2 g~v~L~~~nF~~~v-~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~------~v~lakVd~~d~~~~~~~~L~~~y 74 (116)
T cd03007 2 GCVDLDTVTFYKVI-PKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATD------DLLVAEVGIKDYGEKLNMELGERY 74 (116)
T ss_pred CeeECChhhHHHHH-hcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC------ceEEEEEecccccchhhHHHHHHh
Confidence 35789999999987 667889999999 8898 77777776666543 3889999994 2346899
Q ss_pred CCC--cCcEEEEEeCCCcccCccccccc-cCHHHHHHHHHhh
Q 007850 503 KSD--GFPTILFFPAGNKSFDPINVDVD-RTVVALYKFLKKN 541 (587)
Q Consensus 503 ~i~--~~Pt~~~~~~~~~~~~~~~~~g~-~~~~~l~~~i~~~ 541 (587)
+|+ ++||+.+|++|... .++.|.|. ++.+.|.+||+++
T Consensus 75 ~I~~~gyPTl~lF~~g~~~-~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 75 KLDKESYPVIYLFHGGDFE-NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCcCCCCEEEEEeCCCcC-CCccCCCCcccHHHHHHHHHhc
Confidence 999 99999999998533 45689997 9999999999987
No 82
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.60 E-value=4.9e-15 Score=121.67 Aligned_cols=99 Identities=30% Similarity=0.636 Sum_probs=85.1
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cc--cccCCCCcCcEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NE--HHRAKSDGFPTIL 511 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~--~~~~~i~~~Pt~~ 511 (587)
+..++..+|++.+ ..+++++|+||++||++|+.+.|.+..+++.+.....+.++.+|++. +. +.+++|+++||++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~ 80 (104)
T cd02997 2 VVHLTDEDFRKFL-KKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFK 80 (104)
T ss_pred eEEechHhHHHHH-hhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEE
Confidence 5678889999887 55669999999999999999999999999998754568899999987 33 3688999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHH
Q 007850 512 FFPAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
+|++|+... ++.|..+.+.+.+||
T Consensus 81 ~~~~g~~~~---~~~g~~~~~~l~~~l 104 (104)
T cd02997 81 YFENGKFVE---KYEGERTAEDIIEFM 104 (104)
T ss_pred EEeCCCeeE---EeCCCCCHHHHHhhC
Confidence 999987654 899999999999885
No 83
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.60 E-value=4e-15 Score=121.01 Aligned_cols=96 Identities=21% Similarity=0.424 Sum_probs=79.6
Q ss_pred EcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-ccccCCCCcCcEEEEEeCCC
Q 007850 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAKSDGFPTILFFPAGN 517 (587)
Q Consensus 439 l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~i~~~Pt~~~~~~~~ 517 (587)
-+.++|++.+ +.+++++|+|||+||++|+.+.|.|..++..+++ ..+.++.+|++.. .+..++|+++||+++|++|+
T Consensus 5 ~~~~~~~~~i-~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~-~~~~~~~vd~d~~~~~~~~~v~~~Pt~~~~~~g~ 82 (102)
T cd02948 5 NNQEEWEELL-SNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGD-DLLHFATAEADTIDTLKRYRGKCEPTFLFYKNGE 82 (102)
T ss_pred cCHHHHHHHH-ccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCC-CcEEEEEEeCCCHHHHHHcCCCcCcEEEEEECCE
Confidence 4667888876 6789999999999999999999999999999874 3467788777633 34789999999999999998
Q ss_pred cccCccccccccCHHHHHHHHHh
Q 007850 518 KSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 518 ~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
.+. +..| .+...|.++|.+
T Consensus 83 ~~~---~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 83 LVA---VIRG-ANAPLLNKTITE 101 (102)
T ss_pred EEE---EEec-CChHHHHHHHhh
Confidence 775 6667 488899998875
No 84
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.60 E-value=3.6e-14 Score=132.19 Aligned_cols=177 Identities=11% Similarity=0.080 Sum_probs=127.7
Q ss_pred cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCCCCHHHHHHHHHHH
Q 007850 335 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 414 (587)
Q Consensus 335 ~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~ 414 (587)
..|+.....++++|..|. ++.+..++++... .+.++..||+.. .|+++++..+......+.|..+.+.+..|++.+
T Consensus 35 ~~C~~~~p~l~~la~~~~-~~~i~~v~vd~~~-~~~l~~~~~V~~--~Pt~~~f~~g~~~~~~~~G~~~~~~l~~~i~~~ 110 (215)
T TIGR02187 35 QYCKETEQLLEELSEVSP-KLKLEIYDFDTPE-DKEEAEKYGVER--VPTTIILEEGKDGGIRYTGIPAGYEFAALIEDI 110 (215)
T ss_pred CchHHHHHHHHHHHhhCC-CceEEEEecCCcc-cHHHHHHcCCCc--cCEEEEEeCCeeeEEEEeecCCHHHHHHHHHHH
Confidence 579999999999999994 5555555554322 668899999976 589888876543334677888889999999988
Q ss_pred hcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 007850 415 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493 (587)
Q Consensus 415 ~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~-v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id 493 (587)
+.= -.. . ..++..+.+.+ ..-+++ +++.||++||++|+.+.+.+++++.... .+.+..+|
T Consensus 111 ~~~-~~~---~-----------~~L~~~~~~~l-~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~---~i~~~~vD 171 (215)
T TIGR02187 111 VRV-SQG---E-----------PGLSEKTVELL-QSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALAND---KILGEMIE 171 (215)
T ss_pred HHh-cCC---C-----------CCCCHHHHHHH-HhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC---ceEEEEEe
Confidence 531 100 0 12333333332 233455 4555999999999999999999998743 47777787
Q ss_pred CCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHh
Q 007850 494 GTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 494 ~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
.+.+. +..++|.++||++++.+|. .+.|..+.+++.+||.+
T Consensus 172 ~~~~~~~~~~~~V~~vPtl~i~~~~~------~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 172 ANENPDLAEKYGVMSVPKIVINKGVE------EFVGAYPEEQFLEYILS 214 (215)
T ss_pred CCCCHHHHHHhCCccCCEEEEecCCE------EEECCCCHHHHHHHHHh
Confidence 76654 4789999999999986553 27798899999999875
No 85
>PTZ00102 disulphide isomerase; Provisional
Probab=99.59 E-value=9.6e-15 Score=154.63 Aligned_cols=116 Identities=32% Similarity=0.644 Sum_probs=102.2
Q ss_pred CCCCCCCCCeEEcChhhHHHH-HhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcC
Q 007850 86 KEPEIDDKDVVVLKERNFSDV-IENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYD 164 (587)
Q Consensus 86 ~~~~~~~~~v~~l~~~~~~~~-~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~ 164 (587)
+.|....+.+..+++.+|++. ++.+++++|+|||+||++|+.+.|.|.++++.+++. ..+.++.+||+.+...++.++
T Consensus 350 ~~p~~~~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~v~~~~id~~~~~~~~~~~~ 428 (477)
T PTZ00102 350 PIPEEQDGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDN-DSIIVAKMNGTANETPLEEFS 428 (477)
T ss_pred CCCCCCCCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccC-CcEEEEEEECCCCccchhcCC
Confidence 345556778999999999987 577899999999999999999999999999988763 369999999999999999999
Q ss_pred CCCCcEEEEEeCC--eeeEeecCCCHHHHHHHHHHhcCCC
Q 007850 165 VQGFPTIYFFVDG--QHKAYNGGRTKDAIVTWIKKKIGPG 202 (587)
Q Consensus 165 i~~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~i~~~~~~~ 202 (587)
++++||+++|++| ....|.|.++.+.|.+||.+....+
T Consensus 429 v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~~ 468 (477)
T PTZ00102 429 WSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATNP 468 (477)
T ss_pred CcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCCC
Confidence 9999999999977 3468999999999999999988643
No 86
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.59 E-value=1.5e-14 Score=119.49 Aligned_cols=94 Identities=21% Similarity=0.255 Sum_probs=81.2
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC---ee
Q 007850 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QH 179 (587)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g---~~ 179 (587)
|.+.+.++..++|.||++||++|+.+.|.++++++.+ + .+.+..||.++.+.++.+|+|.++||+++|++| ..
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~---~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~~~ 90 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D---KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKDGG 90 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C---ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeecce
Confidence 4444556777899999999999999999999999875 3 599999999999999999999999999999876 23
Q ss_pred eEeecCCCHHHHHHHHHHhcC
Q 007850 180 KAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 180 ~~~~g~~~~~~l~~~i~~~~~ 200 (587)
.++.|.....++.+||...+.
T Consensus 91 ~~~~G~~~~~el~~~i~~i~~ 111 (113)
T cd02975 91 IRYYGLPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEEecCchHHHHHHHHHHHh
Confidence 478999999999999987653
No 87
>PRK10996 thioredoxin 2; Provisional
Probab=99.58 E-value=8.8e-15 Score=125.87 Aligned_cols=103 Identities=23% Similarity=0.564 Sum_probs=89.6
Q ss_pred CCceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007850 433 DGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 510 (587)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~ 510 (587)
++.+..++..+|++.+ +.+++++|+||++||++|+.+.|.|.++++.+.+ .+.++.+|++.+. +.+++|.++||+
T Consensus 34 ~~~~i~~~~~~~~~~i-~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~--~v~~~~vd~~~~~~l~~~~~V~~~Ptl 110 (139)
T PRK10996 34 DGEVINATGETLDKLL-QDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG--KVRFVKVNTEAERELSARFRIRSIPTI 110 (139)
T ss_pred CCCCEEcCHHHHHHHH-hCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC--CeEEEEEeCCCCHHHHHhcCCCccCEE
Confidence 4456678889999876 5689999999999999999999999999998875 5888999987655 478999999999
Q ss_pred EEEeCCCcccCccccccccCHHHHHHHHHhh
Q 007850 511 LFFPAGNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
++|++|+.+. ++.|..+.+.|.+||+++
T Consensus 111 ii~~~G~~v~---~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 111 MIFKNGQVVD---MLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred EEEECCEEEE---EEcCCCCHHHHHHHHHHh
Confidence 9999988765 788999999999999875
No 88
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.58 E-value=1.2e-14 Score=120.51 Aligned_cols=102 Identities=32% Similarity=0.605 Sum_probs=83.4
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCcc----ccccCCCCcCcE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN----EHHRAKSDGFPT 509 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~----~~~~~~i~~~Pt 509 (587)
.+..+++++|++.+.+.+++++|.||++||++|+.+.|.|++++..+++. ..+.++.+||+.. .+..++++++||
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt 81 (114)
T cd02992 2 PVIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPT 81 (114)
T ss_pred CeEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCE
Confidence 57889999999999887889999999999999999999999999998653 3588999998542 357899999999
Q ss_pred EEEEeCCCccc-Cccccccc-cCHHHHHH
Q 007850 510 ILFFPAGNKSF-DPINVDVD-RTVVALYK 536 (587)
Q Consensus 510 ~~~~~~~~~~~-~~~~~~g~-~~~~~l~~ 536 (587)
+++|++|.... ....|.|. +..++++.
T Consensus 82 ~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 82 LRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred EEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 99998887542 12567775 66666654
No 89
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.58 E-value=2.4e-14 Score=127.47 Aligned_cols=88 Identities=24% Similarity=0.401 Sum_probs=76.8
Q ss_pred CCCeEEcCh-hhHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCC
Q 007850 92 DKDVVVLKE-RNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG 167 (587)
Q Consensus 92 ~~~v~~l~~-~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~ 167 (587)
-+.+.+++. .+|.+.+... .+++|.||++||++|+.+.|.|.+++.++.. +.|+.||+++. .++.+|+|.+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~----vkF~kVd~d~~-~l~~~f~v~~ 135 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA----VKFCKIRASAT-GASDEFDTDA 135 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC----eEEEEEeccch-hhHHhCCCCC
Confidence 467889999 9999888543 3999999999999999999999999998754 99999999987 8999999999
Q ss_pred CcEEEEEeCC-eeeEeec
Q 007850 168 FPTIYFFVDG-QHKAYNG 184 (587)
Q Consensus 168 ~Pt~~~~~~g-~~~~~~g 184 (587)
+||+++|++| .+.++.|
T Consensus 136 vPTlllyk~G~~v~~~vG 153 (175)
T cd02987 136 LPALLVYKGGELIGNFVR 153 (175)
T ss_pred CCEEEEEECCEEEEEEec
Confidence 9999999999 4445544
No 90
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.58 E-value=2.5e-14 Score=119.44 Aligned_cols=97 Identities=12% Similarity=0.215 Sum_probs=78.5
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-----------HHHHHH
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAHE 162 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~~ 162 (587)
.+..++..++.+.+.+++.++|+||++|||+|+.+.|.|.+++++. ++.++.||.+.+ .++.++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~-----~~~~y~vdvd~~~~~~~~~~~~~~~~~~~ 81 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQT-----KAPIYYIDSENNGSFEMSSLNDLTAFRSR 81 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHhc-----CCcEEEEECCCccCcCcccHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999872 355666776643 255666
Q ss_pred cC----CCCCcEEEEEeCC-eeeEeec-CCCHHHHHHHH
Q 007850 163 YD----VQGFPTIYFFVDG-QHKAYNG-GRTKDAIVTWI 195 (587)
Q Consensus 163 ~~----i~~~Pt~~~~~~g-~~~~~~g-~~~~~~l~~~i 195 (587)
++ |.++||+++|++| .+.+..| ..+.++|.+|+
T Consensus 82 ~~i~~~i~~~PT~v~~k~Gk~v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 82 FGIPTSFMGTPTFVHITDGKQVSVRCGSSTTAQELQDIA 120 (122)
T ss_pred cCCcccCCCCCEEEEEeCCeEEEEEeCCCCCHHHHHHHh
Confidence 65 5569999999999 5567778 45688888876
No 91
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=7e-15 Score=147.17 Aligned_cols=112 Identities=33% Similarity=0.647 Sum_probs=99.0
Q ss_pred CCCceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--cccCCCCcCc
Q 007850 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--HHRAKSDGFP 508 (587)
Q Consensus 432 ~~~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~--~~~~~i~~~P 508 (587)
....+..|+.++|++.+ ..+..++|.||||||+||+++.|.+.+.|..+... ..+.++.|||..+. |.+|.|++||
T Consensus 23 ~~~~Vl~Lt~dnf~~~i-~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 23 AEEDVLVLTKDNFKETI-NGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred cccceEEEecccHHHHh-ccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 35678999999999987 66788999999999999999999999999999875 48999999998764 5799999999
Q ss_pred EEEEEeCCCcccCccccccccCHHHHHHHHHhhCCCCCc
Q 007850 509 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 547 (587)
Q Consensus 509 t~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 547 (587)
|+.+|++|.. +..|.|+++.+.|..|+.+.......
T Consensus 102 TlkiFrnG~~---~~~Y~G~r~adgIv~wl~kq~gPa~~ 137 (493)
T KOG0190|consen 102 TLKIFRNGRS---AQDYNGPREADGIVKWLKKQSGPASK 137 (493)
T ss_pred eEEEEecCCc---ceeccCcccHHHHHHHHHhccCCCce
Confidence 9999999986 34899999999999999998775543
No 92
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.57 E-value=2.1e-14 Score=142.73 Aligned_cols=225 Identities=22% Similarity=0.356 Sum_probs=141.6
Q ss_pred CCeEEcChhhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc--HHHHHHcCCCCCc
Q 007850 93 KDVVVLKERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFP 169 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~P 169 (587)
.+|+.|+..+|+.++... +..+|.||++|||+|+++.|.|+++++.+.....-+.++.|||.+. ..+|++++|++||
T Consensus 39 D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~P 118 (606)
T KOG1731|consen 39 DPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYP 118 (606)
T ss_pred CCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCc
Confidence 679999999999988654 4789999999999999999999999999999887899999999864 6899999999999
Q ss_pred EEEEEeCC-e----eeEeecCCCHHHHHHHHHHhc-----------CC---CcccccchhHHHHhccc-CCeEEEEEecC
Q 007850 170 TIYFFVDG-Q----HKAYNGGRTKDAIVTWIKKKI-----------GP---GIYNITTLDEAERVLTS-ETKVVLGYLNS 229 (587)
Q Consensus 170 t~~~~~~g-~----~~~~~g~~~~~~l~~~i~~~~-----------~~---~~~~i~~~~~~~~~~~~-~~~~~i~~~~~ 229 (587)
++.+|..+ . ...+.|.....++...+.+.+ .| ++.+-++..++.+...+ .+.+.|++-..
T Consensus 119 tlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvAiv~e~~ 198 (606)
T KOG1731|consen 119 TLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVAIVFETE 198 (606)
T ss_pred eeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeEEEEecC
Confidence 99999644 2 245566666677766665543 12 23334455566555544 33455555333
Q ss_pred CCCcchHHHHHhcccCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccCCcceeecc--CCCCChhHHHHHHHhc---C
Q 007850 230 LVGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFA--DGKFDKSTIADFVFSN---K 304 (587)
Q Consensus 230 ~~~~~~~~f~~~a~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~--~g~~~~~~i~~fi~~~---~ 304 (587)
........+...-.. .......+-+.+....+++.. .+.|...++|+.......-. ..+...+.|.++|... .
T Consensus 199 ~s~lg~~~~l~~l~~-~~v~vr~~~d~q~~~~~~l~~-~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I~~~lg~~~~a~ 276 (606)
T KOG1731|consen 199 PSDLGWANLLNDLPS-KQVGVRARLDTQNFPLFGLKP-DNFPLALLFRNGEQQPLWPSSSSRSAYVKKIDDLLGDKNEAS 276 (606)
T ss_pred CcccHHHHHHhhccC-CCcceEEEecchhccccccCC-CCchhhhhhcCCcccccccccccHHHHHHHHHHHhcCccccC
Confidence 333333333332221 222222222223222333222 24577777887664332210 2222346788887654 3
Q ss_pred CCceeecCCCCcccc
Q 007850 305 LPLVTIFTRENAPSV 319 (587)
Q Consensus 305 ~p~v~~lt~~~~~~~ 319 (587)
.|.+...+..+....
T Consensus 277 ~pt~~p~~~~~~~~~ 291 (606)
T KOG1731|consen 277 GPTLHPITATTAAPT 291 (606)
T ss_pred CCCcCcccccccchh
Confidence 455655555444443
No 93
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=8.8e-15 Score=117.59 Aligned_cols=85 Identities=28% Similarity=0.534 Sum_probs=72.1
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cccccCCCCcCcEEEEEeCCCcccCcccccc
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEHHRAKSDGFPTILFFPAGNKSFDPINVDV 527 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g 527 (587)
..++.++|.|||+||++|+.+.|.+.+++.+|++ +.|+.+|++. ..+..++|..+||+++|++|+.+. ++.|
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~---v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~~~~---~~vG 92 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD---VVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGEEVD---EVVG 92 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC---CEEEEEecccCHhHHHhcCceEeeEEEEEECCEEEE---EEec
Confidence 4468999999999999999999999999999986 8899999885 335789999999999999999876 7777
Q ss_pred ccCHHHHHHHHHhh
Q 007850 528 DRTVVALYKFLKKN 541 (587)
Q Consensus 528 ~~~~~~l~~~i~~~ 541 (587)
. +..++.+.+.++
T Consensus 93 a-~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 93 A-NKAELEKKIAKH 105 (106)
T ss_pred C-CHHHHHHHHHhc
Confidence 4 344777777654
No 94
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.57 E-value=1.2e-14 Score=120.60 Aligned_cols=88 Identities=19% Similarity=0.323 Sum_probs=76.2
Q ss_pred CceEEEcCcchhHHhhcC--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-ccccCCCCcCcEE
Q 007850 434 GDVKIVVGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAKSDGFPTI 510 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~--~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~i~~~Pt~ 510 (587)
+.+..++.++|.+.+.+. +++++|+||++||++|+.+.|.|++++..+.+ +.|+++|++.+ .+..++|.++||+
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~---v~f~~vd~~~~~l~~~~~i~~~Pt~ 80 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE---TKFVKINAEKAFLVNYLDIKVLPTL 80 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC---cEEEEEEchhhHHHHhcCCCcCCEE
Confidence 567889999999998665 38999999999999999999999999999864 78899999874 3578999999999
Q ss_pred EEEeCCCcccCcccccc
Q 007850 511 LFFPAGNKSFDPINVDV 527 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~g 527 (587)
++|++|+.+. ++.|
T Consensus 81 ~~f~~G~~v~---~~~G 94 (113)
T cd02957 81 LVYKNGELID---NIVG 94 (113)
T ss_pred EEEECCEEEE---EEec
Confidence 9999998875 5555
No 95
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.56 E-value=9.9e-14 Score=126.00 Aligned_cols=86 Identities=17% Similarity=0.326 Sum_probs=70.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-----------------------HHHHHcCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----------------------ELAHEYDV 165 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----------------------~l~~~~~i 165 (587)
++++++|+||++||++|++++|.+.++.++ ++.++.|+.++++ .++..|+|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~------~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ------GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc------CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 689999999999999999999999888642 4777788765432 34557899
Q ss_pred CCCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 166 QGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 166 ~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
.++|++++++ +| ....+.|..+.+.+.++++..+.
T Consensus 141 ~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~~~~ 177 (185)
T PRK15412 141 YGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKPLWE 177 (185)
T ss_pred CcCCeEEEECCCceEEEEEecCCCHHHHHHHHHHHHH
Confidence 9999999996 88 66789999999999999988764
No 96
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.56 E-value=3.8e-14 Score=120.35 Aligned_cols=97 Identities=21% Similarity=0.422 Sum_probs=81.7
Q ss_pred hhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHH---HHHHHhhhcCCcEEEEEEeCCCc-------------HHHHHHc
Q 007850 101 RNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEE-------------NELAHEY 163 (587)
Q Consensus 101 ~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~ 163 (587)
+.+..+.+++ ++++|.||++||++|+.+.|.+. .+.+.+.+ ++.++.||.+.+ ..++.+|
T Consensus 4 ~~~~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~---~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 4 EDLAEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA---HFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh---heEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4567778888 99999999999999999999885 56656654 688999998764 6899999
Q ss_pred CCCCCcEEEEEe-C-C-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 164 DVQGFPTIYFFV-D-G-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 164 ~i~~~Pt~~~~~-~-g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
+|.++||+++|. + | ...++.|..+.+.+.+++...+.
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHh
Confidence 999999999997 5 6 55788999999999999887654
No 97
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.56 E-value=2.2e-14 Score=117.04 Aligned_cols=99 Identities=29% Similarity=0.558 Sum_probs=85.4
Q ss_pred EcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCC
Q 007850 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAG 516 (587)
Q Consensus 439 l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~ 516 (587)
++.++|.+.+.+.+++++|+||++||++|+.+.|.|+++++.+.+ .+.++.+|++.+. +.++++.++|++++|++|
T Consensus 1 i~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g 78 (101)
T TIGR01068 1 LTDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEG--KVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNG 78 (101)
T ss_pred CCHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC--CeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCC
Confidence 356788888876678999999999999999999999999988865 5889999988765 478999999999999988
Q ss_pred CcccCccccccccCHHHHHHHHHhhC
Q 007850 517 NKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
+... .+.|..+.+.+.+||++++
T Consensus 79 ~~~~---~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 79 KEVD---RSVGALPKAALKQLINKNL 101 (101)
T ss_pred cEee---eecCCCCHHHHHHHHHhhC
Confidence 7754 7778899999999998753
No 98
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.55 E-value=5.6e-14 Score=143.94 Aligned_cols=88 Identities=22% Similarity=0.395 Sum_probs=73.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEE----------------------------eCCCcHHHH
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKV----------------------------DATEENELA 160 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~v----------------------------d~~~~~~l~ 160 (587)
+++++||+|||+||++|+.++|.|.+++++++.. ++.++.| +++.+..+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~--~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~la 132 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFS--SANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLA 132 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccC--CeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHH
Confidence 6899999999999999999999999999988742 3555444 334556788
Q ss_pred HHcCCCCCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHh
Q 007850 161 HEYDVQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 161 ~~~~i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~ 198 (587)
+.|+|.++||++++. +| .+..+.|.++.+.|.++|+..
T Consensus 133 k~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 133 QSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHHh
Confidence 999999999998884 88 667899999999999999843
No 99
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.54 E-value=8.2e-14 Score=111.57 Aligned_cols=90 Identities=39% Similarity=0.760 Sum_probs=81.1
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eee
Q 007850 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHK 180 (587)
Q Consensus 102 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~ 180 (587)
+|+..+..+++++|.||++||++|+.+.+.|.++++. . .++.++.+|++....++.++++.++|+++++++| ...
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~---~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y---PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-C---CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5677777779999999999999999999999999887 2 2699999999999999999999999999999988 577
Q ss_pred EeecCCCHHHHHHHH
Q 007850 181 AYNGGRTKDAIVTWI 195 (587)
Q Consensus 181 ~~~g~~~~~~l~~~i 195 (587)
.+.|..+.+.|..||
T Consensus 78 ~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 RVVGADPKEELEEFL 92 (93)
T ss_pred EEecCCCHHHHHHHh
Confidence 889988889988876
No 100
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.53 E-value=2.1e-14 Score=115.13 Aligned_cols=95 Identities=16% Similarity=0.098 Sum_probs=82.6
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCC--ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPW--CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 510 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~--C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~ 510 (587)
....++..||++.+ +.+.+++|.||++| |++|+.+.|.|.++++.+.+ .+.++.+|++.+. +.+|+|+++||+
T Consensus 11 ~~~~~~~~~~~~~~-~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~--~v~f~kVdid~~~~la~~f~V~sIPTl 87 (111)
T cd02965 11 GWPRVDAATLDDWL-AAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPG--RFRAAVVGRADEQALAARFGVLRTPAL 87 (111)
T ss_pred CCcccccccHHHHH-hCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCC--cEEEEEEECCCCHHHHHHcCCCcCCEE
Confidence 34678999999877 77899999999997 99999999999999999986 4778888887765 478999999999
Q ss_pred EEEeCCCcccCccccccccCHHHHH
Q 007850 511 LFFPAGNKSFDPINVDVDRTVVALY 535 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~g~~~~~~l~ 535 (587)
++|++|+.+. ++.|..+.+++.
T Consensus 88 i~fkdGk~v~---~~~G~~~~~e~~ 109 (111)
T cd02965 88 LFFRDGRYVG---VLAGIRDWDEYV 109 (111)
T ss_pred EEEECCEEEE---EEeCccCHHHHh
Confidence 9999999886 788988877765
No 101
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.53 E-value=3.8e-14 Score=122.19 Aligned_cols=87 Identities=18% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCceEEEcCcchhHHhhc-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCc---
Q 007850 433 DGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDG--- 506 (587)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~-~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~--- 506 (587)
...+..++.++|++.+.. .+++++|.||++||++|+.+.|.|+++++.+.+ .++.++.+|++.+. +.+++|.+
T Consensus 27 ~~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~-~~v~f~~VDvd~~~~la~~~~V~~~~~ 105 (152)
T cd02962 27 PEHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNN-NNLKFGKIDIGRFPNVAEKFRVSTSPL 105 (152)
T ss_pred CCccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHccc-CCeEEEEEECCCCHHHHHHcCceecCC
Confidence 357788999999998744 457899999999999999999999999999864 35899999997764 46788877
Q ss_pred ---CcEEEEEeCCCccc
Q 007850 507 ---FPTILFFPAGNKSF 520 (587)
Q Consensus 507 ---~Pt~~~~~~~~~~~ 520 (587)
+||+++|++|+.+.
T Consensus 106 v~~~PT~ilf~~Gk~v~ 122 (152)
T cd02962 106 SKQLPTIILFQGGKEVA 122 (152)
T ss_pred cCCCCEEEEEECCEEEE
Confidence 99999999998876
No 102
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.53 E-value=4.1e-14 Score=143.06 Aligned_cols=104 Identities=31% Similarity=0.618 Sum_probs=88.8
Q ss_pred CceEEEcCcchhHHhh--cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc---c-ccCCCCcC
Q 007850 434 GDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---H-HRAKSDGF 507 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~--~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~-~~~~i~~~ 507 (587)
..|..|+.++|+..+. +.+++|||.|||+||++|+.+.|.|+++++.+++. .+.++.+|++.+. + ..++|+++
T Consensus 351 ~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~-~v~~~kVdvD~~~~~~~~~~~~I~~~ 429 (463)
T TIGR00424 351 NNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGS-GVKVAKFRADGDQKEFAKQELQLGSF 429 (463)
T ss_pred CCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccC-CcEEEEEECCCCccHHHHHHcCCCcc
Confidence 4688999999999884 46789999999999999999999999999998763 4778888777543 2 57999999
Q ss_pred cEEEEEeCCCcccCccccc-cccCHHHHHHHHHh
Q 007850 508 PTILFFPAGNKSFDPINVD-VDRTVVALYKFLKK 540 (587)
Q Consensus 508 Pt~~~~~~~~~~~~~~~~~-g~~~~~~l~~~i~~ 540 (587)
||+++|++|.. .++.|. |.++.+.|..||+.
T Consensus 430 PTii~Fk~g~~--~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 430 PTILFFPKHSS--RPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ceEEEEECCCC--CceeCCCCCCCHHHHHHHHHh
Confidence 99999999975 567898 58999999999974
No 103
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.53 E-value=5.8e-14 Score=114.91 Aligned_cols=94 Identities=27% Similarity=0.597 Sum_probs=78.5
Q ss_pred cchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCc
Q 007850 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 442 ~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~ 518 (587)
++|++. ..++.++|.||++||++|+.+.|.|.++++.++.. ..+.++.+|++... +..++|.++||+++|++|..
T Consensus 7 ~~~~~~--~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~~~ 84 (104)
T cd03000 7 DSFKDV--RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGDLA 84 (104)
T ss_pred hhhhhh--ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCCCc
Confidence 577773 34779999999999999999999999999998653 35889999987543 47899999999999976633
Q ss_pred ccCccccccccCHHHHHHHHHhh
Q 007850 519 SFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
.++.|..+.+.|.+|+++.
T Consensus 85 ----~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 85 ----YNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred ----eeecCCCCHHHHHHHHHhh
Confidence 3789999999999999864
No 104
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=5e-14 Score=125.07 Aligned_cols=98 Identities=28% Similarity=0.542 Sum_probs=84.8
Q ss_pred ChhhHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007850 99 KERNFSDVI--ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (587)
Q Consensus 99 ~~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (587)
++..|+..+ ..++.++|.|+|+||+||++..|.|..++.+|.+ ..|++||.++-+..+..+||.+.||+++|++
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~----aVFlkVdVd~c~~taa~~gV~amPTFiff~n 83 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG----AVFLKVDVDECRGTAATNGVNAMPTFIFFRN 83 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc----cEEEEEeHHHhhchhhhcCcccCceEEEEec
Confidence 356677666 3467999999999999999999999999999966 8999999999999999999999999999999
Q ss_pred C-eeeEeecCCCHHHHHHHHHHhcCC
Q 007850 177 G-QHKAYNGGRTKDAIVTWIKKKIGP 201 (587)
Q Consensus 177 g-~~~~~~g~~~~~~l~~~i~~~~~~ 201 (587)
| ++.++.| .+...|++-+.++...
T Consensus 84 g~kid~~qG-Ad~~gLe~kv~~~~st 108 (288)
T KOG0908|consen 84 GVKIDQIQG-ADASGLEEKVAKYAST 108 (288)
T ss_pred CeEeeeecC-CCHHHHHHHHHHHhcc
Confidence 9 5566666 5778888888888754
No 105
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.52 E-value=2.3e-13 Score=117.83 Aligned_cols=85 Identities=12% Similarity=0.281 Sum_probs=64.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc------------HHHH-HHc---CCCCCcEEE
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE------------NELA-HEY---DVQGFPTIY 172 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------~~l~-~~~---~i~~~Pt~~ 172 (587)
.+++.+|+|||+||++|++++|.+++++++++ +.++.|+.+.. .... ..+ ++.++||++
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~-----~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~ 123 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG-----LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATF 123 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHHHcC-----CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEE
Confidence 35577999999999999999999999998872 34444444432 2333 345 789999999
Q ss_pred EEe-CC-e-eeEeecCCCHHHHHHHHHHh
Q 007850 173 FFV-DG-Q-HKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 173 ~~~-~g-~-~~~~~g~~~~~~l~~~i~~~ 198 (587)
+++ +| . ...+.|..+.+.+.+.+.+.
T Consensus 124 LID~~G~~i~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 124 LVNVNTRKAYPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred EEeCCCCEEEEEeecccCHHHHHHHHHHh
Confidence 996 55 3 34689999999998888765
No 106
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.51 E-value=5.8e-14 Score=125.06 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=98.0
Q ss_pred HHHHHHHhcCCCCCCCcCCCCCCCCCCceEEEcC-cchhHHhhcCC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC
Q 007850 408 KTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVG-NNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV 484 (587)
Q Consensus 408 ~~fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~-~~f~~~v~~~~--~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~ 484 (587)
+.|++.+...++....+.. .....-+.+..++. ++|.+.+...+ .+|+|.||++||++|+.+.|.|..++..+..
T Consensus 37 e~~l~~~R~~R~~el~~~~-~~~~~~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~- 114 (175)
T cd02987 37 EEFLQQYREQRMQEMHAKL-PFGRRFGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPA- 114 (175)
T ss_pred HHHHHHHHHHHHHHHHHhc-cccCCCCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCC-
Confidence 4477777666555443321 11123577889999 99999986544 4899999999999999999999999999854
Q ss_pred CcEEEEEEeCCccc-cccCCCCcCcEEEEEeCCCcccCccccc---c-ccCHHHHHHHHHhh
Q 007850 485 DSIVIAKMDGTTNE-HHRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 541 (587)
Q Consensus 485 ~~~~~~~id~~~~~-~~~~~i~~~Pt~~~~~~~~~~~~~~~~~---g-~~~~~~l~~~i~~~ 541 (587)
+.|++||++.+. +..|+|.++||+++|++|+.+.+.+.+. | ..+.+.|..||.++
T Consensus 115 --vkF~kVd~d~~~l~~~f~v~~vPTlllyk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 115 --VKFCKIRASATGASDEFDTDALPALLVYKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred --eEEEEEeccchhhHHhCCCCCCCEEEEEECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 899999998753 4689999999999999998875332222 1 55778888887764
No 107
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.51 E-value=9.1e-14 Score=119.83 Aligned_cols=98 Identities=22% Similarity=0.351 Sum_probs=78.5
Q ss_pred cchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc----ccccCCCCcCcEEEEEe-CC
Q 007850 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----EHHRAKSDGFPTILFFP-AG 516 (587)
Q Consensus 442 ~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~i~~~Pt~~~~~-~~ 516 (587)
..|++.+ ..+++++|+|||+||++|+.+.|.|.++++.+.+. +.|+.+|++.+ .+..|+|.++||+++|. +|
T Consensus 11 ~~~~~a~-~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~--~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G 87 (142)
T cd02950 11 TPPEVAL-SNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ--VNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREG 87 (142)
T ss_pred CCHHHHH-hCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC--eeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCC
Confidence 4566654 67899999999999999999999999999998763 44555555432 35789999999999994 67
Q ss_pred CcccCccccccccCHHHHHHHHHhhCCCC
Q 007850 517 NKSFDPINVDVDRTVVALYKFLKKNASIP 545 (587)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 545 (587)
+.+. ++.|..+.++|.++|.+.....
T Consensus 88 ~~v~---~~~G~~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 88 NEEG---QSIGLQPKQVLAQNLDALVAGE 113 (142)
T ss_pred CEEE---EEeCCCCHHHHHHHHHHHHcCC
Confidence 7765 7889888999999999877533
No 108
>PLN02309 5'-adenylylsulfate reductase
Probab=99.50 E-value=8.1e-14 Score=140.99 Aligned_cols=105 Identities=30% Similarity=0.625 Sum_probs=90.6
Q ss_pred CCceEEEcCcchhHHhh--cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-ccc--cc-cCCCCc
Q 007850 433 DGDVKIVVGNNFDEIVL--DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-TNE--HH-RAKSDG 506 (587)
Q Consensus 433 ~~~~~~l~~~~f~~~v~--~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~--~~-~~~i~~ 506 (587)
.+.+..++.++|++.+. +.+++++|+||+|||++|+.+.|.|.++++.+.+ ..+.|+.+|++ .+. +. .++|++
T Consensus 344 ~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~-~~V~f~kVD~d~~~~~la~~~~~I~~ 422 (457)
T PLN02309 344 SQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAG-SGVKVAKFRADGDQKEFAKQELQLGS 422 (457)
T ss_pred CCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhcc-CCeEEEEEECCCcchHHHHhhCCCce
Confidence 35788999999999873 5788999999999999999999999999999876 36999999998 322 33 589999
Q ss_pred CcEEEEEeCCCcccCcccccc-ccCHHHHHHHHHh
Q 007850 507 FPTILFFPAGNKSFDPINVDV-DRTVVALYKFLKK 540 (587)
Q Consensus 507 ~Pt~~~~~~~~~~~~~~~~~g-~~~~~~l~~~i~~ 540 (587)
+||+++|++|.. +++.|.| .++.+.|+.||+.
T Consensus 423 ~PTil~f~~g~~--~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 423 FPTILLFPKNSS--RPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred eeEEEEEeCCCC--CeeecCCCCcCHHHHHHHHHH
Confidence 999999998876 5778985 7999999999986
No 109
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.50 E-value=1.1e-13 Score=114.21 Aligned_cols=83 Identities=23% Similarity=0.347 Sum_probs=72.5
Q ss_pred CceEEEcC-cchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007850 434 GDVKIVVG-NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 510 (587)
Q Consensus 434 ~~~~~l~~-~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~ 510 (587)
+.+..++. ++|.+.+ ..++.++|+||++||++|+.+.|.|+++++.+++ +.|+++|.+.+. ..+++|.++||+
T Consensus 4 g~v~~i~~~~~~~~~i-~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~---i~f~~Vd~~~~~~l~~~~~v~~vPt~ 79 (113)
T cd02989 4 GKYREVSDEKEFFEIV-KSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE---TKFIKVNAEKAPFLVEKLNIKVLPTV 79 (113)
T ss_pred CCeEEeCCHHHHHHHH-hCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC---CEEEEEEcccCHHHHHHCCCccCCEE
Confidence 55677777 7899987 5568999999999999999999999999998764 788999988765 578999999999
Q ss_pred EEEeCCCccc
Q 007850 511 LFFPAGNKSF 520 (587)
Q Consensus 511 ~~~~~~~~~~ 520 (587)
++|++|+.+.
T Consensus 80 l~fk~G~~v~ 89 (113)
T cd02989 80 ILFKNGKTVD 89 (113)
T ss_pred EEEECCEEEE
Confidence 9999998775
No 110
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.49 E-value=8.8e-14 Score=113.40 Aligned_cols=98 Identities=49% Similarity=0.915 Sum_probs=82.7
Q ss_pred EEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCCcCcEEEEEeC
Q 007850 438 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSDGFPTILFFPA 515 (587)
Q Consensus 438 ~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~i~~~Pt~~~~~~ 515 (587)
.++.++|.+.+.+ +++++|+||++||++|+.+.|.|.++++.++....+.++.+|++.+ .+..++|+++||+++|++
T Consensus 2 ~l~~~~~~~~i~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~ 80 (101)
T cd02961 2 ELTDDNFDELVKD-SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPN 80 (101)
T ss_pred cccHHHHHHHHhC-CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcC
Confidence 4677889988744 4599999999999999999999999999986335799999999874 357899999999999988
Q ss_pred CCcccCccccccccCHHHHHHHH
Q 007850 516 GNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 516 ~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
+.. ...+|.|..+.++|.+|+
T Consensus 81 ~~~--~~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 81 GSK--EPVKYEGPRTLESLVEFI 101 (101)
T ss_pred CCc--ccccCCCCcCHHHHHhhC
Confidence 742 345899999999998875
No 111
>PTZ00062 glutaredoxin; Provisional
Probab=99.48 E-value=5.7e-13 Score=120.33 Aligned_cols=111 Identities=14% Similarity=0.205 Sum_probs=87.3
Q ss_pred ChhhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 99 KERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 99 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
+..++.+.+..+ ..++++|||+||++|+.+.|.+.++++++.. +.|+.||.+ |+|.++||+++|++|
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~----~~F~~V~~d--------~~V~~vPtfv~~~~g 72 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS----LEFYVVNLA--------DANNEYGVFEFYQNS 72 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC----cEEEEEccc--------cCcccceEEEEEECC
Confidence 456788888744 6789999999999999999999999998855 999999976 999999999999999
Q ss_pred -eeeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEE
Q 007850 178 -QHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVV 223 (587)
Q Consensus 178 -~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 223 (587)
.+.++.|. +...|..++.++..+..... ..+.++++++++++++
T Consensus 73 ~~i~r~~G~-~~~~~~~~~~~~~~~~~~~~-~~~~v~~li~~~~Vvv 117 (204)
T PTZ00062 73 QLINSLEGC-NTSTLVSFIRGWAQKGSSED-TVEKIERLIRNHKILL 117 (204)
T ss_pred EEEeeeeCC-CHHHHHHHHHHHcCCCCHHH-HHHHHHHHHhcCCEEE
Confidence 44566654 58999999999887644221 1234666666665444
No 112
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.47 E-value=1.2e-12 Score=118.39 Aligned_cols=88 Identities=24% Similarity=0.488 Sum_probs=75.3
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC----------------------cHHHHHHcCCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------------------ENELAHEYDVQ 166 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------~~~l~~~~~i~ 166 (587)
.+++++|+||++||++|+...|.|.++++++.+. ++.++.|+++. ...+++.|+|.
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~--~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK--GVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVG 137 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC--CeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCC
Confidence 5789999999999999999999999999999772 47888888753 34778999999
Q ss_pred CCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHh
Q 007850 167 GFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 167 ~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~ 198 (587)
++|++++++ +| ....+.|..+.+.+.+++.+.
T Consensus 138 ~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 138 PLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred CcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHHh
Confidence 999999996 77 555889999999999988753
No 113
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.47 E-value=4.7e-13 Score=120.75 Aligned_cols=87 Identities=20% Similarity=0.348 Sum_probs=74.2
Q ss_pred CCCeEEcChhhHHHHH-hC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCC
Q 007850 92 DKDVVVLKERNFSDVI-EN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGF 168 (587)
Q Consensus 92 ~~~v~~l~~~~~~~~~-~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 168 (587)
-+.|..++..+|...+ .. +.+|||.||++||++|+.+.|.|.++++++.. +.|+.||++. .+..|+|.++
T Consensus 81 ~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~----vkFvkI~ad~---~~~~~~i~~l 153 (192)
T cd02988 81 FGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD----TKFVKIISTQ---CIPNYPDKNL 153 (192)
T ss_pred CCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC----CEEEEEEhHH---hHhhCCCCCC
Confidence 4679999999999755 33 35899999999999999999999999999854 8999999864 3688999999
Q ss_pred cEEEEEeCC-eeeEeecC
Q 007850 169 PTIYFFVDG-QHKAYNGG 185 (587)
Q Consensus 169 Pt~~~~~~g-~~~~~~g~ 185 (587)
||+++|++| .+.++.|.
T Consensus 154 PTlliyk~G~~v~~ivG~ 171 (192)
T cd02988 154 PTILVYRNGDIVKQFIGL 171 (192)
T ss_pred CEEEEEECCEEEEEEeCc
Confidence 999999999 55567663
No 114
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.47 E-value=1.9e-13 Score=111.99 Aligned_cols=92 Identities=22% Similarity=0.367 Sum_probs=75.3
Q ss_pred cchhHHhhcCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCccc------cccCCCCcCcEEEE
Q 007850 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSDGFPTILF 512 (587)
Q Consensus 442 ~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~------~~~~~i~~~Pt~~~ 512 (587)
+.|.+.+ +.+++++|+||++||++|+.+.+.+ .++++.+.+ ++.++.+|++.+. +.+++++++||+++
T Consensus 2 ~~~~~~~-~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~ 78 (104)
T cd02953 2 AALAQAL-AQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK--DVVLLRADWTKNDPEITALLKRFGVFGPPTYLF 78 (104)
T ss_pred HHHHHHH-HcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC--CeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEE
Confidence 3566655 6689999999999999999999988 678888865 6899999987532 25789999999999
Q ss_pred EeC--CCcccCccccccccCHHHHHHHHH
Q 007850 513 FPA--GNKSFDPINVDVDRTVVALYKFLK 539 (587)
Q Consensus 513 ~~~--~~~~~~~~~~~g~~~~~~l~~~i~ 539 (587)
|+. |+.. .++.|..+.++|.++|+
T Consensus 79 ~~~~~g~~~---~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 79 YGPGGEPEP---LRLPGFLTADEFLEALE 104 (104)
T ss_pred ECCCCCCCC---cccccccCHHHHHHHhC
Confidence 984 5543 48999999999998873
No 115
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.46 E-value=2e-13 Score=123.13 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=96.2
Q ss_pred HHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcE
Q 007850 410 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487 (587)
Q Consensus 410 fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~--~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 487 (587)
|+..+...++....+... ...-+.+..++..+|...|...+ .+|||.||++||++|+.+.|.|.++|..+.. +
T Consensus 60 ~Le~yR~kRl~el~~~~~--~~~~G~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~---v 134 (192)
T cd02988 60 FLEEYRRKRLAEMKALAE--KSKFGEVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPD---T 134 (192)
T ss_pred HHHHHHHHHHHHHHHhhh--hCCCCeEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCC---C
Confidence 666666665554433211 12357899999999998886554 4899999999999999999999999999864 8
Q ss_pred EEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccc---c-ccCHHHHHHHHHhh
Q 007850 488 VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKN 541 (587)
Q Consensus 488 ~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~---g-~~~~~~l~~~i~~~ 541 (587)
.|++||++.. .+.|++.++||+++|++|+.+.+.+.+. | ..+.+.|..+|.+.
T Consensus 135 kFvkI~ad~~-~~~~~i~~lPTlliyk~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~~ 191 (192)
T cd02988 135 KFVKIISTQC-IPNYPDKNLPTILVYRNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQV 191 (192)
T ss_pred EEEEEEhHHh-HhhCCCCCCCEEEEEECCEEEEEEeCchhhCCCCCCHHHHHHHHHhc
Confidence 8999998754 5789999999999999999876322222 1 45778888877654
No 116
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.46 E-value=7.1e-13 Score=103.42 Aligned_cols=80 Identities=28% Similarity=0.455 Sum_probs=71.7
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHH
Q 007850 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIV 192 (587)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~ 192 (587)
.+..||++||++|+...|.++++++.++. .+.++.||+++++++++++++.++||+++ +|. ..+.|..+.+.+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~-~~~~G~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD---AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD-VEFIGAPTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC---ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE-EEEecCCCHHHHH
Confidence 47789999999999999999999998865 59999999999999999999999999986 675 4788999999999
Q ss_pred HHHHHh
Q 007850 193 TWIKKK 198 (587)
Q Consensus 193 ~~i~~~ 198 (587)
+++.+.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 998765
No 117
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.46 E-value=2.1e-13 Score=114.87 Aligned_cols=97 Identities=15% Similarity=0.171 Sum_probs=77.8
Q ss_pred cCcchhHHhh-cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE-EEeC
Q 007850 440 VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL-FFPA 515 (587)
Q Consensus 440 ~~~~f~~~v~-~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~-~~~~ 515 (587)
+..+|++.+. ..+++|+|.|||+||++|+.+.|.|+++++.+++ .+.++.+|++.+. +..|+|++.|+++ ||++
T Consensus 10 s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~--~~~~~kVDVDe~~dla~~y~I~~~~t~~~ffk~ 87 (142)
T PLN00410 10 SGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKN--FAVIYLVDITEVPDFNTMYELYDPCTVMFFFRN 87 (142)
T ss_pred CHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCC--ceEEEEEECCCCHHHHHHcCccCCCcEEEEEEC
Confidence 4568888885 4578999999999999999999999999999876 4667888887754 5789999777666 8899
Q ss_pred CC-cccCcccccc--------ccCHHHHHHHHHhh
Q 007850 516 GN-KSFDPINVDV--------DRTVVALYKFLKKN 541 (587)
Q Consensus 516 ~~-~~~~~~~~~g--------~~~~~~l~~~i~~~ 541 (587)
|. .+. +..| ..+.++|++-++..
T Consensus 88 g~~~vd---~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 88 KHIMID---LGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred CeEEEE---EecccccccccccCCHHHHHHHHHHH
Confidence 98 554 6666 56778888877764
No 118
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.45 E-value=2.1e-13 Score=109.95 Aligned_cols=91 Identities=19% Similarity=0.399 Sum_probs=78.5
Q ss_pred hhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccC
Q 007850 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFD 521 (587)
Q Consensus 444 f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~ 521 (587)
++..+.+.+++++|+||++||+.|+.+.|.++++++.+.+ .+.++.+|++.+. ...+++.++|++++|++|+.+.
T Consensus 5 ~~~~~~~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~--~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~~v~- 81 (97)
T cd02949 5 LRKLYHESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG--AVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKELVK- 81 (97)
T ss_pred HHHHHHhCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC--ceEEEEEECCCCHHHHHHCCCeeccEEEEEECCeEEE-
Confidence 4556677889999999999999999999999999999875 5888888887654 4689999999999999887765
Q ss_pred ccccccccCHHHHHHHHH
Q 007850 522 PINVDVDRTVVALYKFLK 539 (587)
Q Consensus 522 ~~~~~g~~~~~~l~~~i~ 539 (587)
++.|..+.++|.+||+
T Consensus 82 --~~~g~~~~~~~~~~l~ 97 (97)
T cd02949 82 --EISGVKMKSEYREFIE 97 (97)
T ss_pred --EEeCCccHHHHHHhhC
Confidence 8889999999998874
No 119
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.45 E-value=5e-13 Score=109.67 Aligned_cols=77 Identities=21% Similarity=0.446 Sum_probs=66.8
Q ss_pred ChhhHHHHHhC--CCeEEEEEEC-------CCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------cHHHHHH
Q 007850 99 KERNFSDVIEN--NKFVMVEFYA-------PWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------ENELAHE 162 (587)
Q Consensus 99 ~~~~~~~~~~~--~~~~~v~f~a-------~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~~~l~~~ 162 (587)
+..+|.+.+.. +++++|.||| +||++|+.+.|.+++++.++++ ++.|+.||+++ +..+..+
T Consensus 8 ~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~---~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 8 GYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE---DCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred CHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC---CCEEEEEEcCCcccccCcchhhHhc
Confidence 35677777764 7899999999 9999999999999999999875 58999999976 4589999
Q ss_pred cCCC-CCcEEEEEeCCe
Q 007850 163 YDVQ-GFPTIYFFVDGQ 178 (587)
Q Consensus 163 ~~i~-~~Pt~~~~~~g~ 178 (587)
++|. ++||+++|+.|.
T Consensus 85 ~~I~~~iPT~~~~~~~~ 101 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ 101 (119)
T ss_pred cCcccCCCEEEEEcCCc
Confidence 9998 999999998773
No 120
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.45 E-value=2.9e-13 Score=109.47 Aligned_cols=92 Identities=23% Similarity=0.434 Sum_probs=75.5
Q ss_pred CcchhHHhhcC-CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCC
Q 007850 441 GNNFDEIVLDE-SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGN 517 (587)
Q Consensus 441 ~~~f~~~v~~~-~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~ 517 (587)
.++|++.+... ++.++|+||++||++|+.+.|.|++++..+. ..+.++.+|++.+. +.++++.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~--~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~ 79 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAF--PSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT 79 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhC--CceEEEEEccccCHHHHHhcCCccccEEEEEECCE
Confidence 45778877554 5899999999999999999999999999973 47999999987654 4789999999999999987
Q ss_pred cccCccccccccCHHHHHHHH
Q 007850 518 KSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 518 ~~~~~~~~~g~~~~~~l~~~i 538 (587)
.+. ++.| .+.+.|.+.|
T Consensus 80 ~~~---~~~g-~~~~~l~~~~ 96 (97)
T cd02984 80 IVD---RVSG-ADPKELAKKV 96 (97)
T ss_pred EEE---EEeC-CCHHHHHHhh
Confidence 764 5666 4567777665
No 121
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.45 E-value=2.1e-12 Score=113.43 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=66.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-------------HHHHHHcCC--CCCcEEEEEe-CC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-------------NELAHEYDV--QGFPTIYFFV-DG 177 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-------------~~l~~~~~i--~~~Pt~~~~~-~g 177 (587)
+|+||++||++|++++|.+.+++++++ +.++.|+.+.. ..+...|++ .++|++++++ +|
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g-----~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG-----FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC-----CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 888999999999999999999999872 55555555422 236678884 6999999995 88
Q ss_pred ee--eEeecCCCHHHHHHHHHHhcCC
Q 007850 178 QH--KAYNGGRTKDAIVTWIKKKIGP 201 (587)
Q Consensus 178 ~~--~~~~g~~~~~~l~~~i~~~~~~ 201 (587)
.. ..+.|..+.+.|.+.|...+..
T Consensus 148 ~i~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 148 LEALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred cEEEEEEECCCCHHHHHHHHHHHHhh
Confidence 44 3799999999999988887754
No 122
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.44 E-value=6.6e-13 Score=108.66 Aligned_cols=87 Identities=16% Similarity=0.263 Sum_probs=77.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCC--CCcEEEEEeC--CeeeEeec
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ--GFPTIYFFVD--GQHKAYNG 184 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~--~~Pt~~~~~~--g~~~~~~g 184 (587)
.++++++.||++||++|+.+.|.+.++++++++ ++.|+.||+++.+.++..+++. ++|+++++++ |..+.+.+
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~---~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~ 87 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKG---KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPE 87 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC---eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCc
Confidence 368999999999999999999999999999987 7999999999999999999999 9999999987 64454544
Q ss_pred -CCCHHHHHHHHHHh
Q 007850 185 -GRTKDAIVTWIKKK 198 (587)
Q Consensus 185 -~~~~~~l~~~i~~~ 198 (587)
..+.+.|.+|+...
T Consensus 88 ~~~~~~~l~~fi~~~ 102 (103)
T cd02982 88 EELTAESLEEFVEDF 102 (103)
T ss_pred cccCHHHHHHHHHhh
Confidence 45899999999864
No 123
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=99.44 E-value=4e-13 Score=110.05 Aligned_cols=107 Identities=23% Similarity=0.183 Sum_probs=96.0
Q ss_pred eeecCCCCccccccCCcccEEEEEEeccchhhHHHHHHHHHHh---ccCceEEEEEEcCCcccccchhhhcCCcCCCCcE
Q 007850 308 VTIFTRENAPSVFESPIKNQLLLFAVSNDSEKLLPVFEEAAKS---FKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKV 384 (587)
Q Consensus 308 v~~lt~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~vA~~---~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~ 384 (587)
|+++|.++...++.++.+.++++| ..++.+.+...++++|++ +++++.|+++|.+... ..+++||++..+.|+
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f-~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~---~~~~~fgl~~~~~P~ 76 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFH-DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFR---HPLLHLGKTPADLPV 76 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEe-cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhh---hHHHHcCCCHhHCCE
Confidence 578999999999999999998888 667788899999999999 9999999999988733 488999999888999
Q ss_pred EEEecCCCCcccc-CCCCCCHHHHHHHHHHHhcCC
Q 007850 385 LAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGK 418 (587)
Q Consensus 385 ~~i~~~~~~~~y~-~~~~~t~e~i~~fi~~~~~gk 418 (587)
+++.+.++..+|. +.++++.++|.+|++++++|+
T Consensus 77 i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~Gk 111 (111)
T cd03072 77 IAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSGK 111 (111)
T ss_pred EEEEcchhcCcCCCCccccCHHHHHHHHHHHhcCC
Confidence 9999887667888 778999999999999999996
No 124
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.43 E-value=5.4e-13 Score=111.44 Aligned_cols=98 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--cc---------ccC--
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EH---------HRA-- 502 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~---------~~~-- 502 (587)
+..++.++|.+.+ .+++.++|+|+++||++|+.+.|.|.++++..+ ..+.++++|.+.. .. ..+
T Consensus 8 ~~~it~~~~~~~i-~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~~~--~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 8 LEVTTVVRALEAL-DKKETATFFIGRKTCPYCRKFSGTLSGVVAQTK--APIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred ceecCHHHHHHHH-HcCCcEEEEEECCCChhHHHHhHHHHHHHHhcC--CcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 4567778888877 567889999999999999999999999999832 3466666654321 01 233
Q ss_pred --CCCcCcEEEEEeCCCcccCcccccc-ccCHHHHHHHHH
Q 007850 503 --KSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYKFLK 539 (587)
Q Consensus 503 --~i~~~Pt~~~~~~~~~~~~~~~~~g-~~~~~~l~~~i~ 539 (587)
++.++||+++|++|+.+. +..| ..+.++|.+|+.
T Consensus 85 ~~~i~~~PT~v~~k~Gk~v~---~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 85 PTSFMGTPTFVHITDGKQVS---VRCGSSTTAQELQDIAA 121 (122)
T ss_pred cccCCCCCEEEEEeCCeEEE---EEeCCCCCHHHHHHHhh
Confidence 566799999999999986 6778 557999999874
No 125
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.42 E-value=1.2e-12 Score=111.78 Aligned_cols=76 Identities=25% Similarity=0.409 Sum_probs=61.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhc-----CCcEEEEEEeCCCcH-------------------------H
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSA-----NESVVLAKVDATEEN-------------------------E 158 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~-----~~~v~~~~vd~~~~~-------------------------~ 158 (587)
++++++|+|||+||++|++++|.|.++++++++. ..++.++.|+.+.+. .
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 5899999999999999999999999999888653 235888888876431 4
Q ss_pred HHHHcCCCCCcEEEEEe-CCeeeEeec
Q 007850 159 LAHEYDVQGFPTIYFFV-DGQHKAYNG 184 (587)
Q Consensus 159 l~~~~~i~~~Pt~~~~~-~g~~~~~~g 184 (587)
+++.|+|.++|++++++ +|.+....|
T Consensus 104 l~~~y~v~~iPt~vlId~~G~Vv~~~~ 130 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGDVLAANA 130 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCcEEeeCh
Confidence 67788999999999996 786655444
No 126
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.40 E-value=8.6e-13 Score=109.05 Aligned_cols=94 Identities=13% Similarity=0.180 Sum_probs=75.5
Q ss_pred hhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccC
Q 007850 444 FDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFD 521 (587)
Q Consensus 444 f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~ 521 (587)
|.+.+ ..+..++|+||++||++|+.+.|.+++++..+ + .+.+..+|.+.+. ...|+|.++||+++|++|++. .
T Consensus 15 ~~~~l-~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~--~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~~~-~ 89 (113)
T cd02975 15 FFKEM-KNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-D--KLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGGKD-G 89 (113)
T ss_pred HHHHh-CCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C--ceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCeec-c
Confidence 44434 45677999999999999999999999999886 3 4667777776554 478999999999999988765 3
Q ss_pred ccccccccCHHHHHHHHHhhC
Q 007850 522 PINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 522 ~~~~~g~~~~~~l~~~i~~~~ 542 (587)
.+++.|..+..++.+||....
T Consensus 90 ~~~~~G~~~~~el~~~i~~i~ 110 (113)
T cd02975 90 GIRYYGLPAGYEFASLIEDIV 110 (113)
T ss_pred eEEEEecCchHHHHHHHHHHH
Confidence 558889888899999988643
No 127
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.39 E-value=3.3e-13 Score=122.67 Aligned_cols=94 Identities=26% Similarity=0.566 Sum_probs=81.7
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccc
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVD 526 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~ 526 (587)
+++..|+|.||||||+||+++.|+|.++...++.. ..+.++++|+..-. +..++|++||||.+|+++-.+ .|.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd~a~----dYR 116 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGDHAI----DYR 116 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCCeee----ecC
Confidence 45667999999999999999999999999998875 37999999998754 468999999999999998765 799
Q ss_pred cccCHHHHHHHHHhhCCCCCc
Q 007850 527 VDRTVVALYKFLKKNASIPFK 547 (587)
Q Consensus 527 g~~~~~~l~~~i~~~~~~~~~ 547 (587)
|.++.+.|+.|..+.+..-+.
T Consensus 117 G~R~Kd~iieFAhR~a~aiI~ 137 (468)
T KOG4277|consen 117 GGREKDAIIEFAHRCAAAIIE 137 (468)
T ss_pred CCccHHHHHHHHHhcccceee
Confidence 999999999999987764443
No 128
>PTZ00051 thioredoxin; Provisional
Probab=99.38 E-value=1.8e-12 Score=104.91 Aligned_cols=91 Identities=24% Similarity=0.463 Sum_probs=72.8
Q ss_pred EEEc-CcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEE
Q 007850 437 KIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFF 513 (587)
Q Consensus 437 ~~l~-~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~ 513 (587)
..++ .++|.+.+ ..++.++|+||++||++|+.+.|.|.++++.+.+ +.++.+|++.+. +.++++.++||+++|
T Consensus 3 ~~i~~~~~~~~~~-~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~---~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 78 (98)
T PTZ00051 3 HIVTSQAEFESTL-SQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK---MVFVKVDVDELSEVAEKENITSMPTFKVF 78 (98)
T ss_pred EEecCHHHHHHHH-hcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC---cEEEEEECcchHHHHHHCCCceeeEEEEE
Confidence 3344 34666654 6788999999999999999999999999997654 788899987654 578999999999999
Q ss_pred eCCCcccCccccccccCHHHHH
Q 007850 514 PAGNKSFDPINVDVDRTVVALY 535 (587)
Q Consensus 514 ~~~~~~~~~~~~~g~~~~~~l~ 535 (587)
++|+.+. ++.|. ..++|.
T Consensus 79 ~~g~~~~---~~~G~-~~~~~~ 96 (98)
T PTZ00051 79 KNGSVVD---TLLGA-NDEALK 96 (98)
T ss_pred eCCeEEE---EEeCC-CHHHhh
Confidence 9998875 77774 445553
No 129
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.38 E-value=6.4e-12 Score=111.24 Aligned_cols=81 Identities=14% Similarity=0.108 Sum_probs=63.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEE------EEEeCCCc--------------------------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVL------AKVDATEE-------------------------- 156 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~------~~vd~~~~-------------------------- 156 (587)
.||+++|+|||+||++|+.++|.+.++.++ ++.+ ..||.++.
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~------~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vll 131 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAA------KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVL 131 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHc------CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEE
Confidence 599999999999999999999999999543 2444 55665532
Q ss_pred ---HHHHHHcCCCCCcEE-EEEe-CC-eeeEeecCCCHHHHHHHH
Q 007850 157 ---NELAHEYDVQGFPTI-YFFV-DG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 157 ---~~l~~~~~i~~~Pt~-~~~~-~g-~~~~~~g~~~~~~l~~~i 195 (587)
..+...|++.++|+. ++++ +| ....+.|..+.+++.+.+
T Consensus 132 D~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~~ee~e~~~ 176 (184)
T TIGR01626 132 DDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALSDSDIQTVI 176 (184)
T ss_pred CCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 245667899999988 6775 88 667899999998887743
No 130
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.37 E-value=1.2e-12 Score=104.71 Aligned_cols=76 Identities=16% Similarity=0.188 Sum_probs=64.7
Q ss_pred cchhHHhhc-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCc
Q 007850 442 NNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 442 ~~f~~~v~~-~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~ 518 (587)
+.|++.+.. .+++|+|.|+|+||++|+.+.|.|.+++..+++ .+.|+.+|.+... ++.|+|.+.||+++|++|+.
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~--~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh 80 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSK--MASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQH 80 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccC--ceEEEEEeccccHHHHHhcCceeCcEEEEEECCcE
Confidence 456776754 489999999999999999999999999999975 2788888887655 47899999999999999876
Q ss_pred c
Q 007850 519 S 519 (587)
Q Consensus 519 ~ 519 (587)
.
T Consensus 81 ~ 81 (114)
T cd02986 81 M 81 (114)
T ss_pred E
Confidence 5
No 131
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.35 E-value=1.3e-11 Score=110.98 Aligned_cols=86 Identities=20% Similarity=0.354 Sum_probs=69.3
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-----------------------CcHHHHHHcC
Q 007850 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----------------------EENELAHEYD 164 (587)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----------------------~~~~l~~~~~ 164 (587)
.++++++|+||++||++|++++|.+.++++. ++.++.|+.+ .+..+.+.|+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~------~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~ 134 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD------GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLG 134 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc------CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcC
Confidence 3688999999999999999999999888653 3555555542 2335667789
Q ss_pred CCCCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHhc
Q 007850 165 VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 165 i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
+.++|++++++ +| ....+.|..+.+.+.++++..+
T Consensus 135 v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 135 VYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred CeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHHh
Confidence 99999888885 88 5678899999999999998876
No 132
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=2.5e-12 Score=114.39 Aligned_cols=102 Identities=25% Similarity=0.417 Sum_probs=83.9
Q ss_pred cCcchhHHhh-cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCC
Q 007850 440 VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAG 516 (587)
Q Consensus 440 ~~~~f~~~v~-~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~ 516 (587)
+.+.|+..+. ...+.|+|.|+|.||++|+++.|.|..++.+|++ .+|+++|++... +..++|.+.||+++|.+|
T Consensus 8 ~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~---aVFlkVdVd~c~~taa~~gV~amPTFiff~ng 84 (288)
T KOG0908|consen 8 SDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG---AVFLKVDVDECRGTAATNGVNAMPTFIFFRNG 84 (288)
T ss_pred CcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc---cEEEEEeHHHhhchhhhcCcccCceEEEEecC
Confidence 3457777763 3457999999999999999999999999999965 789999987654 467899999999999999
Q ss_pred CcccCccccccccCHHHHHHHHHhhCCCCCcc
Q 007850 517 NKSFDPINVDVDRTVVALYKFLKKNASIPFKI 548 (587)
Q Consensus 517 ~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~~ 548 (587)
.++. .+.| .++..|.+.+.++++..--.
T Consensus 85 ~kid---~~qG-Ad~~gLe~kv~~~~stsaa~ 112 (288)
T KOG0908|consen 85 VKID---QIQG-ADASGLEEKVAKYASTSAAS 112 (288)
T ss_pred eEee---eecC-CCHHHHHHHHHHHhccCccc
Confidence 9986 7777 56788888888887654333
No 133
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.34 E-value=5.9e-12 Score=107.93 Aligned_cols=73 Identities=23% Similarity=0.518 Sum_probs=60.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc------------------------HHHHHHcC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE------------------------NELAHEYD 164 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~------------------------~~l~~~~~ 164 (587)
.+++++|+||++||++|+.++|.+.++++++.+.+.++.++.|+.+.. ..+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 678999999999999999999999999999876534577776766533 35778899
Q ss_pred CCCCcEEEEEe-CCeeeE
Q 007850 165 VQGFPTIYFFV-DGQHKA 181 (587)
Q Consensus 165 i~~~Pt~~~~~-~g~~~~ 181 (587)
|.++|++++++ +|++..
T Consensus 97 v~~~P~~~lid~~G~i~~ 114 (131)
T cd03009 97 IEGIPTLIILDADGEVVT 114 (131)
T ss_pred CCCCCEEEEECCCCCEEc
Confidence 99999999997 775443
No 134
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.34 E-value=1.9e-12 Score=107.40 Aligned_cols=96 Identities=21% Similarity=0.423 Sum_probs=66.7
Q ss_pred hhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCC--CcEEEEEe-CC
Q 007850 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQG--FPTIYFFV-DG 177 (587)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~Pt~~~~~-~g 177 (587)
+.++....++++++|.|||+||++|+.+.|.+.+....... ..++..+.+|.+.. .....|++.+ +||++++. +|
T Consensus 10 ~al~~A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd~~~~-~~~~~~~~~g~~vPt~~f~~~~G 87 (117)
T cd02959 10 DGIKEAKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLEDDEE-PKDEEFSPDGGYIPRILFLDPSG 87 (117)
T ss_pred HHHHHHHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEecCCCC-chhhhcccCCCccceEEEECCCC
Confidence 44555667889999999999999999999999998775443 22344444443322 4557888876 99999996 88
Q ss_pred -e---eeEeecCCCHHHHHHHHHHh
Q 007850 178 -Q---HKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 178 -~---~~~~~g~~~~~~l~~~i~~~ 198 (587)
. .....|..+...+...+...
T Consensus 88 k~~~~~~~~~~~~~~~~f~~~~~~~ 112 (117)
T cd02959 88 DVHPEIINKKGNPNYKYFYSSAAQV 112 (117)
T ss_pred CCchhhccCCCCccccccCCCHHHH
Confidence 2 23556666666555555443
No 135
>PTZ00062 glutaredoxin; Provisional
Probab=99.32 E-value=6.3e-12 Score=113.55 Aligned_cols=92 Identities=9% Similarity=0.130 Sum_probs=78.5
Q ss_pred cCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcc
Q 007850 440 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 440 ~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~ 519 (587)
+.++|.+.+..+.+.++++|||+||++|+.+.|++.++++.++. +.|+.+|.+ ++|.++||+++|++|+.+
T Consensus 5 ~~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~---~~F~~V~~d------~~V~~vPtfv~~~~g~~i 75 (204)
T PTZ00062 5 KKEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFPS---LEFYVVNLA------DANNEYGVFEFYQNSQLI 75 (204)
T ss_pred CHHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCCC---cEEEEEccc------cCcccceEEEEEECCEEE
Confidence 34567777644457899999999999999999999999999865 999999976 999999999999999998
Q ss_pred cCccccccccCHHHHHHHHHhhCCC
Q 007850 520 FDPINVDVDRTVVALYKFLKKNASI 544 (587)
Q Consensus 520 ~~~~~~~g~~~~~~l~~~i~~~~~~ 544 (587)
. ++.| -++..|..++.++...
T Consensus 76 ~---r~~G-~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 76 N---SLEG-CNTSTLVSFIRGWAQK 96 (204)
T ss_pred e---eeeC-CCHHHHHHHHHHHcCC
Confidence 6 7877 4578888888887664
No 136
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.31 E-value=3.3e-12 Score=116.77 Aligned_cols=105 Identities=26% Similarity=0.506 Sum_probs=90.7
Q ss_pred cCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---CcEEEEEEeCCccc--cccCCCCcCcEEEEEe
Q 007850 440 VGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNE--HHRAKSDGFPTILFFP 514 (587)
Q Consensus 440 ~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~ 514 (587)
+..|++..+ +....|+|.|||.||+.++.++|+|.+.|..++.. .+++++++||+.++ +.+|.|..|||+.+|.
T Consensus 2 t~~N~~~il-~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 2 TSENIDSIL-DSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred ccccHHHhh-ccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 445777765 66899999999999999999999999999987642 58999999999876 4799999999999999
Q ss_pred CCCcccCccccccccCHHHHHHHHHhhCCCCCc
Q 007850 515 AGNKSFDPINVDVDRTVVALYKFLKKNASIPFK 547 (587)
Q Consensus 515 ~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~~~ 547 (587)
+|... ...|.|.++++.|.+||++..+-+++
T Consensus 81 nG~~~--~rEYRg~RsVeaL~efi~kq~s~~i~ 111 (375)
T KOG0912|consen 81 NGEMM--KREYRGQRSVEALIEFIEKQLSDPIN 111 (375)
T ss_pred ccchh--hhhhccchhHHHHHHHHHHHhccHHH
Confidence 99874 34899999999999999999887655
No 137
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.31 E-value=1.8e-11 Score=98.34 Aligned_cols=68 Identities=29% Similarity=0.626 Sum_probs=56.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-------------------------HHHHHcC
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEYD 164 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~~ 164 (587)
||+++|+|||+||++|+++.|.+.++.+++++ +.++.++.|.++++. .+.+.|+
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~-~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 79 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKK-KDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYG 79 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT-TTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCC
Confidence 68999999999999999999999999999994 457999999887542 5778899
Q ss_pred CCCCcEEEEEe-CCe
Q 007850 165 VQGFPTIYFFV-DGQ 178 (587)
Q Consensus 165 i~~~Pt~~~~~-~g~ 178 (587)
|.++|++++++ +|.
T Consensus 80 i~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 80 INGIPTLVLLDPDGK 94 (95)
T ss_dssp -TSSSEEEEEETTSB
T ss_pred CCcCCEEEEECCCCC
Confidence 99999999997 564
No 138
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.29 E-value=1.5e-11 Score=105.39 Aligned_cols=76 Identities=26% Similarity=0.500 Sum_probs=60.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-------------------------HHHHHc
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEY 163 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~ 163 (587)
+|++++|+||++||++|+.++|.+.++++.+++.+.++.++.|+++... .+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 5899999999999999999999999999998764335777777765432 456679
Q ss_pred CCCCCcEEEEEe-CCeeeEeec
Q 007850 164 DVQGFPTIYFFV-DGQHKAYNG 184 (587)
Q Consensus 164 ~i~~~Pt~~~~~-~g~~~~~~g 184 (587)
+|.++|++++++ +|.+....|
T Consensus 96 ~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 96 KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CCCCCCEEEEECCCCCEEchhH
Confidence 999999999996 776554433
No 139
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.28 E-value=1.7e-11 Score=97.99 Aligned_cols=89 Identities=30% Similarity=0.586 Sum_probs=74.6
Q ss_pred chhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCccc
Q 007850 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSF 520 (587)
Q Consensus 443 ~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~ 520 (587)
+|+..+. .+++++|+||++||++|+.+.+.+.++++. . ..+.++.+|++.+. +..+++.++|++++|++|+.+.
T Consensus 2 ~~~~~~~-~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~--~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~~~~ 77 (93)
T cd02947 2 EFEELIK-SAKPVVVDFWAPWCGPCKAIAPVLEELAEE-Y--PKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGKEVD 77 (93)
T ss_pred chHHHHh-cCCcEEEEEECCCChhHHHhhHHHHHHHHH-C--CCceEEEEECCCChhHHHhcCcccccEEEEEECCEEEE
Confidence 5676664 348999999999999999999999999988 2 36888888887643 4789999999999999997654
Q ss_pred CccccccccCHHHHHHHH
Q 007850 521 DPINVDVDRTVVALYKFL 538 (587)
Q Consensus 521 ~~~~~~g~~~~~~l~~~i 538 (587)
.+.|..+.+.|.+||
T Consensus 78 ---~~~g~~~~~~l~~~i 92 (93)
T cd02947 78 ---RVVGADPKEELEEFL 92 (93)
T ss_pred ---EEecCCCHHHHHHHh
Confidence 778888888998887
No 140
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.28 E-value=2.6e-11 Score=103.37 Aligned_cols=78 Identities=21% Similarity=0.391 Sum_probs=63.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe-----------------------CCCcHHHHHHcCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-----------------------ATEENELAHEYDV 165 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-----------------------~~~~~~l~~~~~i 165 (587)
++++++|+||++||++|++++|.+.++.+.+ ++.++.|+ ++....+++.|++
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-----~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v 98 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQG-----RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGV 98 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-----CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCC
Confidence 5889999999999999999999999998764 25555555 3345578888999
Q ss_pred CCCcEEEEEe-CC-eeeEeecCCCHHHH
Q 007850 166 QGFPTIYFFV-DG-QHKAYNGGRTKDAI 191 (587)
Q Consensus 166 ~~~Pt~~~~~-~g-~~~~~~g~~~~~~l 191 (587)
.++|+++++. +| ....+.|..+.+.|
T Consensus 99 ~~~P~~~~ld~~G~v~~~~~G~~~~~~~ 126 (127)
T cd03010 99 YGVPETFLIDGDGIIRYKHVGPLTPEVW 126 (127)
T ss_pred CCCCeEEEECCCceEEEEEeccCChHhc
Confidence 9999888885 88 56788999887754
No 141
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.26 E-value=2.1e-11 Score=100.12 Aligned_cols=77 Identities=22% Similarity=0.399 Sum_probs=62.0
Q ss_pred CcchhHHhhc-CCCcEEEEEeC-------CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--------c-cccCC
Q 007850 441 GNNFDEIVLD-ESKDVLLEIYA-------PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--------E-HHRAK 503 (587)
Q Consensus 441 ~~~f~~~v~~-~~~~v~v~f~~-------~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~-~~~~~ 503 (587)
.++|.+.+.. ++++++|.||| +||++|+.+.|.+++++..+++ ++.++.||++.. . ...++
T Consensus 9 ~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~--~v~fv~Vdvd~~~~w~d~~~~~~~~~~ 86 (119)
T cd02952 9 YEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE--DCVFIYCDVGDRPYWRDPNNPFRTDPK 86 (119)
T ss_pred HHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC--CCEEEEEEcCCcccccCcchhhHhccC
Confidence 4567777653 36899999999 9999999999999999999874 477888888652 2 25778
Q ss_pred CC-cCcEEEEEeCCCcc
Q 007850 504 SD-GFPTILFFPAGNKS 519 (587)
Q Consensus 504 i~-~~Pt~~~~~~~~~~ 519 (587)
|. ++||+++|+.|+++
T Consensus 87 I~~~iPT~~~~~~~~~l 103 (119)
T cd02952 87 LTTGVPTLLRWKTPQRL 103 (119)
T ss_pred cccCCCEEEEEcCCcee
Confidence 98 99999999777654
No 142
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.25 E-value=1.8e-11 Score=103.81 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=70.6
Q ss_pred hcCC-CcEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCCcEEEEEEeCCcc---------------ccccCCCCcCcE
Q 007850 449 LDES-KDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTN---------------EHHRAKSDGFPT 509 (587)
Q Consensus 449 ~~~~-~~v~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~~id~~~~---------------~~~~~~i~~~Pt 509 (587)
.+.+ ++++|+||++||++|+.+.|.+. .+.+.+.+ .+.++.+|.+.+ ....+++.++||
T Consensus 10 ~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~--~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~v~~~Pt 87 (125)
T cd02951 10 AADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA--HFVVVYINIDGDKEVTDFDGEALSEKELARKYRVRFTPT 87 (125)
T ss_pred HHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh--heEEEEEEccCCceeeccCCCCccHHHHHHHcCCccccE
Confidence 3566 99999999999999999999885 56666654 577888887643 236789999999
Q ss_pred EEEEeCC--CcccCccccccccCHHHHHHHHHhhCC
Q 007850 510 ILFFPAG--NKSFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 510 ~~~~~~~--~~~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
+++|..+ +.+ .++.|..+.+.+.++|+....
T Consensus 88 ~~~~~~~gg~~~---~~~~G~~~~~~~~~~l~~~~~ 120 (125)
T cd02951 88 VIFLDPEGGKEI---ARLPGYLPPDEFLAYLEYVQE 120 (125)
T ss_pred EEEEcCCCCcee---EEecCCCCHHHHHHHHHHHHh
Confidence 9999764 444 378898888889888887543
No 143
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.24 E-value=4.6e-11 Score=90.83 Aligned_cols=73 Identities=23% Similarity=0.345 Sum_probs=59.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecC-CCHHHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGG-RTKDAIV 192 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~-~~~~~l~ 192 (587)
.|.||++||++|+...|.++++++++.. .+.++.|| +.+.+.+|++.++||+++ +|... +.|. .+.+.|.
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~---~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~~~-~~G~~~~~~~l~ 72 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI---DAEFEKVT---DMNEILEAGVTATPGVAV--DGELV-IMGKIPSKEEIK 72 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC---CeEEEEeC---CHHHHHHcCCCcCCEEEE--CCEEE-EEeccCCHHHHH
Confidence 3789999999999999999999998865 68888887 345578899999999998 88555 7775 4557777
Q ss_pred HHH
Q 007850 193 TWI 195 (587)
Q Consensus 193 ~~i 195 (587)
+++
T Consensus 73 ~~l 75 (76)
T TIGR00412 73 EIL 75 (76)
T ss_pred HHh
Confidence 665
No 144
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.24 E-value=7.1e-11 Score=112.96 Aligned_cols=87 Identities=17% Similarity=0.219 Sum_probs=70.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-----------cHHHHHHcCCCCCcEEEEEeC-
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-----------ENELAHEYDVQGFPTIYFFVD- 176 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~- 176 (587)
.++++||+||++||++|+.++|.+.++++++. +.++.|+.+. +..+++++||.++|++++++.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-----~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~ 239 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-----IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPD 239 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-----cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECC
Confidence 37899999999999999999999999998873 4455555443 357889999999999999985
Q ss_pred C-ee-eEeecCCCHHHHHHHHHHhcC
Q 007850 177 G-QH-KAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 177 g-~~-~~~~g~~~~~~l~~~i~~~~~ 200 (587)
| .+ ....|..+.+.|.+.+.....
T Consensus 240 ~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 240 PNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 5 43 356699999999998877654
No 145
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.23 E-value=1.1e-08 Score=108.25 Aligned_cols=310 Identities=16% Similarity=0.238 Sum_probs=207.4
Q ss_pred CCeEEcC-hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEE
Q 007850 93 KDVVVLK-ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTI 171 (587)
Q Consensus 93 ~~v~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~ 171 (587)
..+..++ ..+++..+....+.+|.|+.. .. ......|.+++..+.+ ...+.... .+..+...+++. -|++
T Consensus 111 ~~~~~i~~~~~~~~~~~~~~~~vi~~~~~-~~--~~~~~~~~~~a~~~~~---~~~~~~~~--~~~~~~~~~~~~-~~~~ 181 (462)
T TIGR01130 111 PAVKEIETVADLEAFLADDDVVVIGFFKD-LD--SELNDTFLSVAEKLRD---VYFFFAHS--SDVAAFAKLGAF-PDSV 181 (462)
T ss_pred CCceeecCHHHHHHHHhcCCcEEEEEECC-CC--cHHHHHHHHHHHHhhh---ccceEEec--CCHHHHhhcCCC-CCcE
Confidence 3455664 678888887777888888765 22 3677788888888877 33333222 234667777765 3666
Q ss_pred EEEe-CC---eeeEeecCC--CHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEecCCCC----cchHHHHHh
Q 007850 172 YFFV-DG---QHKAYNGGR--TKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLNSLVG----SESEVLADA 241 (587)
Q Consensus 172 ~~~~-~g---~~~~~~g~~--~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~f~~~ 241 (587)
.+|+ .+ ....|.|.. +.+.|..||....-|.+..++. ..+..+.......++.++..... .....+..+
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 260 (462)
T TIGR01130 182 VLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGEFTQ-ETAAKYFESGPLVVLYYNVDESLDPFEELRNRFLEA 260 (462)
T ss_pred EEecccccccccccccCcccCCHHHHHHHHHHcCCCceEeeCC-cchhhHhCCCCceeEEEEecCCchHHHHHHHHHHHH
Confidence 6664 22 224677765 5589999999998888888754 55566666653333333322222 234556666
Q ss_pred c-ccCC-ceeEEecCCh---hHHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcC------------
Q 007850 242 S-RLED-DVNFYQTTNP---DVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNK------------ 304 (587)
Q Consensus 242 a-~~~~-~~~F~~~~~~---~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~------------ 304 (587)
| ++++ .+.|+.+... .++..+|+.. ...|.++++...+.....+..+.++.+.|.+||....
T Consensus 261 a~~~~~~~i~f~~~d~~~~~~~~~~~~~~~-~~~P~~vi~~~~~~~~y~~~~~~~~~~~i~~fi~~~~~g~~~~~~~se~ 339 (462)
T TIGR01130 261 AKKFRGKFVNFAVADEEDFGRELEYFGLKA-EKFPAVAIQDLEGNKKYPMDQEEFSSENLEAFVKDFLDGKLKPYLKSEP 339 (462)
T ss_pred HHHCCCCeEEEEEecHHHhHHHHHHcCCCc-cCCceEEEEeCCcccccCCCcCCCCHHHHHHHHHHHhcCCCCeeeccCC
Confidence 6 5564 7888877654 5777788874 2369999988765233344133788999999998633
Q ss_pred -----CCceeecCCCCccccccCCcccEEEEEEec--cchhhHHHHHHHHHHhccC---ceEEEEEEcCCcccccchhhh
Q 007850 305 -----LPLVTIFTRENAPSVFESPIKNQLLLFAVS--NDSEKLLPVFEEAAKSFKG---KLIFVYVQMDNEDVGKPVSEY 374 (587)
Q Consensus 305 -----~p~v~~lt~~~~~~~~~~~~~~~il~~~~~--~~~~~~~~~l~~vA~~~~~---~l~f~~vd~~~~~~~~~~~~~ 374 (587)
...+..++..++..+........++.|... ..|+.+...+.++|..+++ ++.|+.+|++..+ +..
T Consensus 340 ~p~~~~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~- 414 (462)
T TIGR01130 340 IPEDDEGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP- 414 (462)
T ss_pred CCccCCCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-
Confidence 123456677777776544445555555544 7799999999999999998 7999999987633 333
Q ss_pred cCCcCCCCcEEEEecCCCC-ccccCCCCCCHHHHHHHHHHHhcCCCC
Q 007850 375 FGITGEAPKVLAYTGNDDA-KKHILDGELTLDKIKTFGEDFLEGKLK 420 (587)
Q Consensus 375 ~gi~~~~~p~~~i~~~~~~-~~y~~~~~~t~e~i~~fi~~~~~gkl~ 420 (587)
+++. ..|.++++..+.. ....+.|..+.+.|.+|+....+.+++
T Consensus 415 ~~i~--~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~~~ 459 (462)
T TIGR01130 415 FEVE--GFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATFPLE 459 (462)
T ss_pred CCcc--ccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCCCCc
Confidence 6664 4698888865543 345677889999999999998776654
No 146
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.22 E-value=4.4e-11 Score=99.42 Aligned_cols=84 Identities=31% Similarity=0.525 Sum_probs=62.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHH---HhhhcCCcEEEEEEeCCCc--------------------HHHHHHcCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAAT---ELKSANESVVLAKVDATEE--------------------NELAHEYDV 165 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~---~~~~~~~~v~~~~vd~~~~--------------------~~l~~~~~i 165 (587)
++++++|.||++||++|+.+.+.+....+ .+++ ++.++.++++.. .++.+.++|
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD---DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC---ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 67899999999999999999999986443 3333 577778877653 358889999
Q ss_pred CCCcEEEEEe-CC-eeeEeecCCCHHHHHHHH
Q 007850 166 QGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 166 ~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i 195 (587)
+++||+++++ +| .+..+.|..+.++|.+++
T Consensus 81 ~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 9999999996 78 566899999999998764
No 147
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.22 E-value=2.1e-11 Score=101.21 Aligned_cols=91 Identities=23% Similarity=0.464 Sum_probs=65.6
Q ss_pred hcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-cccCCCCc--CcEEEEEe-CCCcccCccc
Q 007850 449 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDG--FPTILFFP-AGNKSFDPIN 524 (587)
Q Consensus 449 ~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~i~~--~Pt~~~~~-~~~~~~~~~~ 524 (587)
...+++++|.|||+||++|+.+.|.+.+.........++..+++|.+... ...+++.+ +||+++|. +|+.+.+.+.
T Consensus 16 ~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~ 95 (117)
T cd02959 16 KDSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIIN 95 (117)
T ss_pred HHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhcc
Confidence 45689999999999999999999999998776543345777777765433 35677775 99999995 7777643455
Q ss_pred cccccCHHHHHHHHH
Q 007850 525 VDVDRTVVALYKFLK 539 (587)
Q Consensus 525 ~~g~~~~~~l~~~i~ 539 (587)
..|..+.+....+|.
T Consensus 96 ~~~~~~~~~f~~~~~ 110 (117)
T cd02959 96 KKGNPNYKYFYSSAA 110 (117)
T ss_pred CCCCccccccCCCHH
Confidence 666555554444443
No 148
>PHA02125 thioredoxin-like protein
Probab=99.22 E-value=9.8e-11 Score=88.96 Aligned_cols=68 Identities=24% Similarity=0.486 Sum_probs=55.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeEeecC-CCHHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNGG-RTKDAI 191 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g~-~~~~~l 191 (587)
+++||++||++|+.+.|.|.++. +.++.||+++..+++++|+|.++||++ +| ...++.|. .+..+|
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~---------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~~~~G~~~~~~~l 69 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE---------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLDRFTGVPRNVAEL 69 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh---------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEEEEeCCCCcHHHH
Confidence 78999999999999999987542 568899999999999999999999987 56 44577784 333555
Q ss_pred HH
Q 007850 192 VT 193 (587)
Q Consensus 192 ~~ 193 (587)
.+
T Consensus 70 ~~ 71 (75)
T PHA02125 70 KE 71 (75)
T ss_pred HH
Confidence 44
No 149
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.21 E-value=1.5e-10 Score=96.26 Aligned_cols=77 Identities=22% Similarity=0.365 Sum_probs=62.3
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhhhcCCcEEEEEEeCCCcHHHHH--------HcCCCC
Q 007850 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDATEENELAH--------EYDVQG 167 (587)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~~~~~l~~--------~~~i~~ 167 (587)
+++.++.+.+++|+++|.|+|+||++|+.+.+. | .++++.+.. ++.++.||.++.+++++ .|++.+
T Consensus 4 ~~eal~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~---~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G 80 (124)
T cd02955 4 GEEAFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE---NFVPIKVDREERPDVDKIYMNAAQAMTGQGG 80 (124)
T ss_pred CHHHHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC---CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCC
Confidence 456778888899999999999999999999873 3 245656555 69999999988877655 358999
Q ss_pred CcEEEEEe-CCe
Q 007850 168 FPTIYFFV-DGQ 178 (587)
Q Consensus 168 ~Pt~~~~~-~g~ 178 (587)
+|+++++. +|.
T Consensus 81 ~Pt~vfl~~~G~ 92 (124)
T cd02955 81 WPLNVFLTPDLK 92 (124)
T ss_pred CCEEEEECCCCC
Confidence 99999996 773
No 150
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.19 E-value=1.3e-10 Score=98.47 Aligned_cols=92 Identities=21% Similarity=0.315 Sum_probs=69.5
Q ss_pred EcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe---------------------CCC
Q 007850 97 VLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD---------------------ATE 155 (587)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd---------------------~~~ 155 (587)
.++++.+......+++++|+||++||++|+.+.|.+.++++.+ .+..+.+| ++.
T Consensus 7 ~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~-----~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~ 81 (123)
T cd03011 7 TLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADY-----PVVSVALRSGDDGAVARFMQKKGYGFPVINDP 81 (123)
T ss_pred cCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhC-----CEEEEEccCCCHHHHHHHHHHcCCCccEEECC
Confidence 3444455544456789999999999999999999999998763 22222222 134
Q ss_pred cHHHHHHcCCCCCcEEEEEe-CCeeeEeecCCCHHHHHH
Q 007850 156 ENELAHEYDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVT 193 (587)
Q Consensus 156 ~~~l~~~~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~ 193 (587)
+..+++.|+|.++|+++++. +|....+.|..+.+.|.+
T Consensus 82 ~~~~~~~~~i~~~P~~~vid~~gi~~~~~g~~~~~~~~~ 120 (123)
T cd03011 82 DGVISARWGVSVTPAIVIVDPGGIVFVTTGVTSEWGLRL 120 (123)
T ss_pred CcHHHHhCCCCcccEEEEEcCCCeEEEEeccCCHHHHHh
Confidence 45799999999999999997 456668889999988865
No 151
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=99.17 E-value=2.7e-10 Score=96.02 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=89.5
Q ss_pred CceeecCCCCc-cccccCCcccEEEEEEec------cchhhHHHHHHHHHHhccCc-eEEEEEEcCCcccccchhhhcCC
Q 007850 306 PLVTIFTRENA-PSVFESPIKNQLLLFAVS------NDSEKLLPVFEEAAKSFKGK-LIFVYVQMDNEDVGKPVSEYFGI 377 (587)
Q Consensus 306 p~v~~lt~~~~-~~~~~~~~~~~il~~~~~------~~~~~~~~~l~~vA~~~~~~-l~f~~vd~~~~~~~~~~~~~~gi 377 (587)
|-+.+++.... ...+.. ...+++.|... ...+.+...++++|++|+++ +.|+|+|... +..+.+.||+
T Consensus 2 ~~~~~l~~~~~~~~~C~~-~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~---~~~~~~~fgl 77 (130)
T cd02983 2 PEIIELTSEDVFEETCEE-KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA---QLDLEEALNI 77 (130)
T ss_pred CceEEecCHHHHHhhccC-CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc---cHHHHHHcCC
Confidence 34556665544 334433 35677777654 23567899999999999999 9999999887 3458999999
Q ss_pred cCCCCcEEEEecCCCCcccc-CCCCCCHHHHHHHHHHHhcCCCCCCCcC
Q 007850 378 TGEAPKVLAYTGNDDAKKHI-LDGELTLDKIKTFGEDFLEGKLKPFFKS 425 (587)
Q Consensus 378 ~~~~~p~~~i~~~~~~~~y~-~~~~~t~e~i~~fi~~~~~gkl~~~~ks 425 (587)
+....|++++++.+++ +|. +.+++|.++|.+|++++++|++....-+
T Consensus 78 ~~~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gkl~~~~~~ 125 (130)
T cd02983 78 GGFGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGRGPTLPVN 125 (130)
T ss_pred CccCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCCcccccCC
Confidence 8878999999988765 777 8899999999999999999999765333
No 152
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.17 E-value=1.6e-10 Score=105.63 Aligned_cols=91 Identities=10% Similarity=0.177 Sum_probs=69.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------c----HHHHHHcCCC-----------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELAHEYDVQ----------- 166 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~~~i~----------- 166 (587)
+|++++|+|||+||++|+.++|.|.++++++++ .++.++.|+|++ . ..+++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~--~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~g 115 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNP--LGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVNG 115 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhc--CceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeeccC
Confidence 589999999999999999999999999999987 358899998741 1 2344454431
Q ss_pred -------------------------CCc---EEEEE-eCC-eeeEeecCCCHHHHHHHHHHhcCC
Q 007850 167 -------------------------GFP---TIYFF-VDG-QHKAYNGGRTKDAIVTWIKKKIGP 201 (587)
Q Consensus 167 -------------------------~~P---t~~~~-~~g-~~~~~~g~~~~~~l~~~i~~~~~~ 201 (587)
.+| +++++ ++| .+.++.|..+.+.+.+.|.+.+..
T Consensus 116 ~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~ll~~ 180 (199)
T PTZ00056 116 ENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAELLGV 180 (199)
T ss_pred CccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 122 57777 488 556788888888898888877644
No 153
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.15 E-value=3.2e-10 Score=105.21 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=76.6
Q ss_pred eEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------c----HHHH-HH
Q 007850 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELA-HE 162 (587)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~-~~ 162 (587)
+..++++.+...-..|++++|+||++||++|+.++|.|.++++++++. ++.++.|+|+. + ..++ ++
T Consensus 84 l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~--Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~ 161 (236)
T PLN02399 84 VKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ--GFEILAFPCNQFGGQEPGSNPEIKQFACTR 161 (236)
T ss_pred EECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC--CcEEEEEecccccccCCCCHHHHHHHHHHh
Confidence 344455444332236799999999999999999999999999999873 58899998741 1 1222 22
Q ss_pred cC----------------------------------CCCCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 163 YD----------------------------------VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 163 ~~----------------------------------i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
++ |.+.|++++++ +| .+.+|.|..+.+.|...|++.+.
T Consensus 162 ~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 162 FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLLA 235 (236)
T ss_pred cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHhc
Confidence 22 22358999995 88 66789999999999999988763
No 154
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.15 E-value=2e-10 Score=93.82 Aligned_cols=85 Identities=16% Similarity=0.276 Sum_probs=71.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCC--cCcEEEEEeC--CCcccCcccc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSD--GFPTILFFPA--GNKSFDPINV 525 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~i~--~~Pt~~~~~~--~~~~~~~~~~ 525 (587)
++++++.|+++||++|+.+.|.+.++|+++++ .+.|+.+|++.+ .+..+++. ++|++++++. |++.. ..
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~--~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~---~~ 86 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKG--KLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYL---MP 86 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCC--eEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccC---CC
Confidence 68999999999999999999999999999986 599999999875 35788999 9999999988 54431 33
Q ss_pred ccccCHHHHHHHHHhh
Q 007850 526 DVDRTVVALYKFLKKN 541 (587)
Q Consensus 526 ~g~~~~~~l~~~i~~~ 541 (587)
.|..+.+.|.+||.+.
T Consensus 87 ~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 87 EEELTAESLEEFVEDF 102 (103)
T ss_pred ccccCHHHHHHHHHhh
Confidence 3445999999999864
No 155
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.15 E-value=2.2e-10 Score=121.73 Aligned_cols=96 Identities=27% Similarity=0.498 Sum_probs=78.6
Q ss_pred ChhhHHHHH----hCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhhcCCcEEEEEEeCCCc----HHHHHHcCCCC
Q 007850 99 KERNFSDVI----ENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEE----NELAHEYDVQG 167 (587)
Q Consensus 99 ~~~~~~~~~----~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~ 167 (587)
+.+++++.+ .++|+++|+|||+||++|+.+.+.. .++.+.++ ++.++.+|++++ .+++++|++.+
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~----~~~~v~vDvt~~~~~~~~l~~~~~v~g 534 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA----DTVLLQADVTANNAEDVALLKHYNVLG 534 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc----CCEEEEEECCCCChhhHHHHHHcCCCC
Confidence 356666655 3578999999999999999998875 56666664 388999999853 68899999999
Q ss_pred CcEEEEEe-CCee---eEeecCCCHHHHHHHHHHh
Q 007850 168 FPTIYFFV-DGQH---KAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 168 ~Pt~~~~~-~g~~---~~~~g~~~~~~l~~~i~~~ 198 (587)
+||+++|+ +|+. .++.|..+.+++.+++++.
T Consensus 535 ~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 535 LPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCEEEEECCCCCCcccccccCCCCHHHHHHHHHHh
Confidence 99999997 7843 5788999999999999874
No 156
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.14 E-value=4.8e-11 Score=119.16 Aligned_cols=111 Identities=28% Similarity=0.534 Sum_probs=89.9
Q ss_pred CCCceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCCccc----cccCCCCc
Q 007850 432 NDGDVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTTNE----HHRAKSDG 506 (587)
Q Consensus 432 ~~~~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~~~----~~~~~i~~ 506 (587)
++++|..|+.++|+..+..+.+..+|.||++|||+|+++.|.|+++|+.+.... -+.++.|||.... |.+++|..
T Consensus 37 ~~D~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~ 116 (606)
T KOG1731|consen 37 PDDPIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSG 116 (606)
T ss_pred CCCCeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCC
Confidence 357899999999999998888899999999999999999999999999988764 5778899997543 68999999
Q ss_pred CcEEEEEeCCCcc-cCccccccccCHHHHHHHHHhhC
Q 007850 507 FPTILFFPAGNKS-FDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 507 ~Pt~~~~~~~~~~-~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
+||+.+|+.+... .....+.|.....++.+.+.+-+
T Consensus 117 ~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~l 153 (606)
T KOG1731|consen 117 YPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTL 153 (606)
T ss_pred CceeeecCCccccCcCCCcccCCcchhhHHHHHHHHH
Confidence 9999999776332 01234556566777777776544
No 157
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.12 E-value=2.3e-10 Score=89.06 Aligned_cols=78 Identities=18% Similarity=0.227 Sum_probs=64.2
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHH
Q 007850 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVV 532 (587)
Q Consensus 455 v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~ 532 (587)
.+..||++||++|+.+.|.+++++..++. .+.++.+|.+.+. ...+++.++||+++ +|+. ++.|..+.+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~--~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~~-----~~~G~~~~~ 72 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD--AVEVEYINVMENPQKAMEYGIMAVPAIVI--NGDV-----EFIGAPTKE 72 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC--ceEEEEEeCccCHHHHHHcCCccCCEEEE--CCEE-----EEecCCCHH
Confidence 46789999999999999999999998865 4777788875543 46899999999986 5542 688988999
Q ss_pred HHHHHHHhh
Q 007850 533 ALYKFLKKN 541 (587)
Q Consensus 533 ~l~~~i~~~ 541 (587)
+|.++|.+.
T Consensus 73 ~l~~~l~~~ 81 (82)
T TIGR00411 73 ELVEAIKKR 81 (82)
T ss_pred HHHHHHHhh
Confidence 999998764
No 158
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.11 E-value=4.4e-10 Score=95.46 Aligned_cols=75 Identities=20% Similarity=0.403 Sum_probs=61.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-----C----------------------cHHHHH
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----E----------------------ENELAH 161 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----~----------------------~~~l~~ 161 (587)
++++++|+||++||++|+.++|.|.++++++++ .++.++.|+.. . ...+.+
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~--~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~ 99 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD--DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWR 99 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc--CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHH
Confidence 578999999999999999999999999999986 35888888652 1 125677
Q ss_pred HcCCCCCcEEEEEe-CC-eeeEeecC
Q 007850 162 EYDVQGFPTIYFFV-DG-QHKAYNGG 185 (587)
Q Consensus 162 ~~~i~~~Pt~~~~~-~g-~~~~~~g~ 185 (587)
.|++.++|++++++ +| ....+.|+
T Consensus 100 ~~~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 100 AYGNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred HhCCCcCCeEEEECCCCcEEEEEecC
Confidence 78999999999996 77 55666664
No 159
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.10 E-value=3.6e-10 Score=128.22 Aligned_cols=90 Identities=17% Similarity=0.351 Sum_probs=76.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeC---------------------------CCcHHHHH
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA---------------------------TEENELAH 161 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~---------------------------~~~~~l~~ 161 (587)
+++++||+|||+||++|+.++|.|+++++++++ .++.++.|.+ +....+.+
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~--~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~ 496 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKD--QPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWR 496 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCC--CCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHH
Confidence 589999999999999999999999999999876 3477777742 12346778
Q ss_pred HcCCCCCcEEEEE-eCC-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 162 EYDVQGFPTIYFF-VDG-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 162 ~~~i~~~Pt~~~~-~~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
+|+|.++|++++| ++| ...++.|....+.|.+++...+.
T Consensus 497 ~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 497 ELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred hcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHHHH
Confidence 8999999999999 488 55688999999999999988763
No 160
>PLN02412 probable glutathione peroxidase
Probab=99.09 E-value=6.2e-10 Score=99.15 Aligned_cols=90 Identities=14% Similarity=0.212 Sum_probs=70.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------c-HH----HHHHcC------------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E-NE----LAHEYD------------ 164 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~~----l~~~~~------------ 164 (587)
.++++||+||++||++|+.++|.|.++++++++ .++.++.|+++. . .+ ++++++
T Consensus 28 ~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~--~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~~ 105 (167)
T PLN02412 28 KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKE--QGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDVN 105 (167)
T ss_pred CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhh--CCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEeeC
Confidence 579999999999999999999999999999987 358899998742 1 11 122211
Q ss_pred ----------------------CCCCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHhcC
Q 007850 165 ----------------------VQGFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 165 ----------------------i~~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
|...|+.++++ +| ...++.|..+.+.+...|+..+.
T Consensus 106 g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 106 GKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHHh
Confidence 33458989995 88 66788999999999999887764
No 161
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.08 E-value=5.6e-10 Score=93.18 Aligned_cols=74 Identities=38% Similarity=0.724 Sum_probs=63.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-----------------------HHHHHHcCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYDV 165 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~i 165 (587)
.+++++|.||++||++|+...+.+.++.+++.. .++.++.|+++.. ..+++.|++
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD--DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGV 95 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC--CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCc
Confidence 478999999999999999999999999999863 3699999999875 678999999
Q ss_pred CCCcEEEEEe-CC-eeeEeec
Q 007850 166 QGFPTIYFFV-DG-QHKAYNG 184 (587)
Q Consensus 166 ~~~Pt~~~~~-~g-~~~~~~g 184 (587)
.++|++++++ +| ....|.|
T Consensus 96 ~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 96 RGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred CccceEEEECCCCcEEEEecC
Confidence 9999999996 77 4555554
No 162
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.08 E-value=7.8e-10 Score=96.76 Aligned_cols=78 Identities=27% Similarity=0.471 Sum_probs=63.3
Q ss_pred hCCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---------------------HHHHHHcCC
Q 007850 108 ENNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDV 165 (587)
Q Consensus 108 ~~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i 165 (587)
.++++++|+||++ ||++|+.++|.+.++++.+++. ++.++.|..+.+ ..+.+.|++
T Consensus 26 ~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~--~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 103 (146)
T PF08534_consen 26 FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDK--GVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGV 103 (146)
T ss_dssp GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTT--TCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTC
T ss_pred hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccC--ceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCC
Confidence 3689999999999 9999999999999999988773 466666665443 368888998
Q ss_pred C---------CCcEEEEEe-CC-eeeEeecCCC
Q 007850 166 Q---------GFPTIYFFV-DG-QHKAYNGGRT 187 (587)
Q Consensus 166 ~---------~~Pt~~~~~-~g-~~~~~~g~~~ 187 (587)
. ++|+++++. +| ....+.|...
T Consensus 104 ~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 104 TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp EEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred ccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence 8 999999996 77 5567777665
No 163
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.08 E-value=5.3e-09 Score=95.54 Aligned_cols=173 Identities=22% Similarity=0.315 Sum_probs=133.7
Q ss_pred hhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCC-CCHHHHHHHHHHHhc
Q 007850 338 EKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGE-LTLDKIKTFGEDFLE 416 (587)
Q Consensus 338 ~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~-~t~e~i~~fi~~~~~ 416 (587)
......+.++|..+++.+.|+.+. ...+++.+|+.. |.++++.........|.+. ++.+.|.+||....-
T Consensus 6 ~~~~~~f~~~A~~~~~~~~F~~~~------~~~~~~~~~~~~---p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 6 SELFEIFEEAAEKLKGDYQFGVTF------NEELAKKYGIKE---PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp SHHHHHHHHHHHHHTTTSEEEEEE-------HHHHHHCTCSS---SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred cHHHHHHHHHHHhCcCCcEEEEEc------HHHHHHHhCCCC---CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 356778999999999999999988 335777888864 7777776655666777776 899999999988543
Q ss_pred CCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007850 417 GKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (587)
Q Consensus 417 gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~-v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 495 (587)
+.+..++.+++..+. ..+.+ ++++|..........+...++.+|+.+++ .+.|+.+|+.
T Consensus 77 -----------------P~v~~~t~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~--~~~f~~~d~~ 136 (184)
T PF13848_consen 77 -----------------PLVPELTPENFEKLF-SSPKPPVLILFDNKDNESTEAFKKELQDIAKKFKG--KINFVYVDAD 136 (184)
T ss_dssp -----------------TSCEEESTTHHHHHH-STSSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTT--TSEEEEEETT
T ss_pred -----------------ccccccchhhHHHHh-cCCCceEEEEEEcCCchhHHHHHHHHHHHHHhcCC--eEEEEEeehH
Confidence 457889999999976 44555 88888877788889999999999999876 5888888887
Q ss_pred cc--ccccCCCC--cCcEEEEEeCCCcccCccccccccCHHHHHHHHHh
Q 007850 496 TN--EHHRAKSD--GFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 496 ~~--~~~~~~i~--~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
.. .+..+++. .+|+++++....... ...+.|..+.+.|.+|+++
T Consensus 137 ~~~~~~~~~~i~~~~~P~~vi~~~~~~~~-~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 137 DFPRLLKYFGIDEDDLPALVIFDSNKGKY-YYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTHHHHHHTTTTTSSSSEEEEEETTTSEE-EE--SSCGCHHHHHHHHHH
T ss_pred HhHHHHHHcCCCCccCCEEEEEECCCCcE-EcCCCCCCCHHHHHHHhcC
Confidence 43 34667777 999999997443321 1234789999999999974
No 164
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.07 E-value=1.3e-09 Score=96.02 Aligned_cols=88 Identities=18% Similarity=0.216 Sum_probs=67.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-------Cc----HHHHHH-cCC-----------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-------EE----NELAHE-YDV----------- 165 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-------~~----~~l~~~-~~i----------- 165 (587)
+|++++|+|||+||++|+.++|.+.++++++++ .++.++.|+|. +. ..++++ +++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~--~~~~v~~i~~~~~~~~~~d~~~~~~~f~~~~~~~~fp~~~d~~~~ 98 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGP--SHFNVLAFPCNQFGESEPDSSKEIESFARRNYGVTFPMFSKIKIL 98 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhh--CCeEEEEEeccccccCCCCCHHHHHHHHHHhcCCCCCccceEecC
Confidence 688999999999999999999999999999987 35899999872 11 223332 221
Q ss_pred ---------------CCCcE----EEEEe-CC-eeeEeecCCCHHHHHHHHHHh
Q 007850 166 ---------------QGFPT----IYFFV-DG-QHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 166 ---------------~~~Pt----~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~ 198 (587)
.++|+ +++++ +| ....|.|..+.+.|...|++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l 152 (153)
T TIGR02540 99 GSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITAL 152 (153)
T ss_pred CCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHh
Confidence 13786 77774 78 667889999999998888764
No 165
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.07 E-value=7.1e-10 Score=92.47 Aligned_cols=66 Identities=21% Similarity=0.355 Sum_probs=47.8
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe-CC--Cc-----------------HHHHHHcCCCCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-AT--EE-----------------NELAHEYDVQGF 168 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-~~--~~-----------------~~l~~~~~i~~~ 168 (587)
++++++|+||++||++|+.++|.+.++++.+.+ ++.++.+. .+ +. ..+.+.|++.++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 96 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD---WLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKL 96 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC---CcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCc
Confidence 478999999999999999999999999887754 45555552 11 11 144555667777
Q ss_pred cEEEEEe-CC
Q 007850 169 PTIYFFV-DG 177 (587)
Q Consensus 169 Pt~~~~~-~g 177 (587)
|++++++ +|
T Consensus 97 P~~~vid~~G 106 (114)
T cd02967 97 PYAVLLDEAG 106 (114)
T ss_pred CeEEEECCCC
Confidence 7777775 44
No 166
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.05 E-value=4.8e-10 Score=85.21 Aligned_cols=73 Identities=21% Similarity=0.269 Sum_probs=58.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccc-cCHHHH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVVAL 534 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~-~~~~~l 534 (587)
.|.||++||++|+.+.|.++++++++.. .+.++++| +...+..+++.++||+++ +|+. .+.|. .+.++|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~--~~~~~~v~-~~~~a~~~~v~~vPti~i--~G~~-----~~~G~~~~~~~l 71 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGI--DAEFEKVT-DMNEILEAGVTATPGVAV--DGEL-----VIMGKIPSKEEI 71 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCC--CeEEEEeC-CHHHHHHcCCCcCCEEEE--CCEE-----EEEeccCCHHHH
Confidence 3789999999999999999999999865 58888888 344567899999999998 6654 36674 456778
Q ss_pred HHHH
Q 007850 535 YKFL 538 (587)
Q Consensus 535 ~~~i 538 (587)
.+++
T Consensus 72 ~~~l 75 (76)
T TIGR00412 72 KEIL 75 (76)
T ss_pred HHHh
Confidence 7776
No 167
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.04 E-value=6.9e-10 Score=82.51 Aligned_cols=57 Identities=26% Similarity=0.374 Sum_probs=50.8
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
-++.||++||++|+...+.++++++... ++.+..+|.++++++++++++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~----~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP----NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC----ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 4788999999999999999999976532 59999999999999999999999999855
No 168
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.02 E-value=6e-09 Score=86.42 Aligned_cols=105 Identities=13% Similarity=0.181 Sum_probs=88.2
Q ss_pred EEcChhhHHHHHhCCCeEEEEEECC--CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 96 VVLKERNFSDVIENNKFVMVEFYAP--WCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~v~f~a~--wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
..++..+++..+..+...+|.|-.. .++-+-...-.+.++++++.+ .++.++.||+++++.++.+|||.++||+++
T Consensus 20 ~~~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~--~~v~~akVDiD~~~~LA~~fgV~siPTLl~ 97 (132)
T PRK11509 20 TPVSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD--YTWQVAIADLEQSEAIGDRFGVFRFPATLV 97 (132)
T ss_pred CccccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC--CceEEEEEECCCCHHHHHHcCCccCCEEEE
Confidence 3455677888887776666666543 577888888899999999964 259999999999999999999999999999
Q ss_pred EeCC-eeeEeecCCCHHHHHHHHHHhcCCC
Q 007850 174 FVDG-QHKAYNGGRTKDAIVTWIKKKIGPG 202 (587)
Q Consensus 174 ~~~g-~~~~~~g~~~~~~l~~~i~~~~~~~ 202 (587)
|++| ......|.++.+.+.++|.+++..+
T Consensus 98 FkdGk~v~~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 98 FTGGNYRGVLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EECCEEEEEEeCcCCHHHHHHHHHHHhcCc
Confidence 9999 5568889999999999999988665
No 169
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.01 E-value=1.5e-09 Score=95.38 Aligned_cols=83 Identities=17% Similarity=0.259 Sum_probs=61.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------c----HHHHHH-cC------------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E----NELAHE-YD------------ 164 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~----~~l~~~-~~------------ 164 (587)
.|++++|+|||+||+ |+.++|.|.++++++++ .++.++.|+++. . ..++++ ++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~--~~~~vv~v~~~~~~~~~~~~~~~~~~f~~~~~~~~fp~~~d~d~~ 97 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD--RGLVVLGFPCNQFGGQEPGSNEEIKEFCETNYGVTFPMFAKIDVN 97 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC--CCEEEEEeccCccccCCCCCHHHHHHHHHHhcCCCceeeeeEecc
Confidence 589999999999999 99999999999999976 358888887642 1 233332 22
Q ss_pred -----------CCCCc-----------EEEEEe-CC-eeeEeecCCCHHHHHHH
Q 007850 165 -----------VQGFP-----------TIYFFV-DG-QHKAYNGGRTKDAIVTW 194 (587)
Q Consensus 165 -----------i~~~P-----------t~~~~~-~g-~~~~~~g~~~~~~l~~~ 194 (587)
+.++| |+++++ +| ...++.|..+.+.|.+.
T Consensus 98 ~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 98 GENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 12456 677774 78 66788898888777643
No 170
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.00 E-value=4.9e-09 Score=95.48 Aligned_cols=86 Identities=20% Similarity=0.317 Sum_probs=61.1
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe-------------C-----CCcHHHHHHcCCCCCcE
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-------------A-----TEENELAHEYDVQGFPT 170 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-------------~-----~~~~~l~~~~~i~~~Pt 170 (587)
.+++++|+||++||++|+.+.|.+.++.+... .++.++..| . ....++++.|++.++|+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~---~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~ 149 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE---TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPY 149 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC---CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccce
Confidence 67899999999999999999999999876532 234444321 0 01346778899999999
Q ss_pred EEEEe-CCeeeEeecC-CCHHHHHHHHHHh
Q 007850 171 IYFFV-DGQHKAYNGG-RTKDAIVTWIKKK 198 (587)
Q Consensus 171 ~~~~~-~g~~~~~~g~-~~~~~l~~~i~~~ 198 (587)
.++++ +|++ .+.|. ...+.+.+.++..
T Consensus 150 ~~lID~~G~I-~~~g~~~~~~~le~ll~~l 178 (189)
T TIGR02661 150 GVLLDQDGKI-RAKGLTNTREHLESLLEAD 178 (189)
T ss_pred EEEECCCCeE-EEccCCCCHHHHHHHHHHH
Confidence 99986 6643 34454 3557777777644
No 171
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=98.98 E-value=5.3e-07 Score=85.16 Aligned_cols=312 Identities=17% Similarity=0.186 Sum_probs=191.2
Q ss_pred cccccchhHHHHhcccCCeEEEEEecCCCCcc--hHH------HHH-hcc--cCCceeEEecC---ChhHHHhcCCCCCC
Q 007850 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSE--SEV------LAD-ASR--LEDDVNFYQTT---NPDVAKIFHLDSKV 268 (587)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~------f~~-~a~--~~~~~~F~~~~---~~~l~~~~~~~~~~ 268 (587)
+..++. .++.+.+++.+..+|.|+....+.. .+. +.+ +|+ -...+.|+.+. +..+++++|+..
T Consensus 36 Vi~Lne-KNfk~~lKkyd~l~l~yh~p~~~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E-- 112 (383)
T PF01216_consen 36 VIDLNE-KNFKRALKKYDVLVLYYHEPVESDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE-- 112 (383)
T ss_dssp CEEE-T-TTHHHHHHH-SEEEEEEE--STSSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S--
T ss_pred eEEcch-hHHHHHHHhhcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc--
Confidence 444444 6788888888888888877654331 112 223 343 36778898874 557999999986
Q ss_pred CCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceeecCCCCccccccC-CcccEEEEEEeccchhhHHHHHHHH
Q 007850 269 NRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTIFTRENAPSVFES-PIKNQLLLFAVSNDSEKLLPVFEEA 347 (587)
Q Consensus 269 ~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~lt~~~~~~~~~~-~~~~~il~~~~~~~~~~~~~~l~~v 347 (587)
.++|.+|+.. +.+.| +|.++.+.+..||..---..|..++...-...+.+ ....-++-|....++. ....|.++
T Consensus 113 -~~SiyVfkd~--~~IEy-dG~~saDtLVeFl~dl~edPVeiIn~~~e~~~Fe~ied~~klIGyFk~~~s~-~yk~FeeA 187 (383)
T PF01216_consen 113 -EGSIYVFKDG--EVIEY-DGERSADTLVEFLLDLLEDPVEIINNKHELKAFERIEDDIKLIGYFKSEDSE-HYKEFEEA 187 (383)
T ss_dssp -TTEEEEEETT--EEEEE--S--SHHHHHHHHHHHHSSSEEEE-SHHHHHHHHH--SS-EEEEE-SSTTSH-HHHHHHHH
T ss_pred -cCcEEEEECC--cEEEe-cCccCHHHHHHHHHHhcccchhhhcChhhhhhhhhcccceeEEEEeCCCCcH-HHHHHHHH
Confidence 6899998864 48889 99999999999999887777877777554433333 2234456655655444 55688999
Q ss_pred HHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCCCCHHHHHHHHHHHhcCCCCCCCcCCC
Q 007850 348 AKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDFLEGKLKPFFKSDP 427 (587)
Q Consensus 348 A~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~~~gkl~~~~ks~~ 427 (587)
|..|.+-+.|..+= .+.+.+.+|+... -+-.|-.......+.+.++.+.+.|.+||+....
T Consensus 188 Ae~F~p~IkFfAtf------d~~vAk~L~lK~n--ev~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~r----------- 248 (383)
T PF01216_consen 188 AEHFQPYIKFFATF------DKKVAKKLGLKLN--EVDFYEPFMDEPITIPGKPYTEEELVEFIEEHKR----------- 248 (383)
T ss_dssp HHHCTTTSEEEEE-------SHHHHHHHT-STT---EEEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-----------
T ss_pred HHhhcCceeEEEEe------cchhhhhcCcccc--ceeeeccccCCCccCCCCCCCHHHHHHHHHHhch-----------
Confidence 99999998886543 4567888888622 2232333323333444567899999999988433
Q ss_pred CCCCCCCceEEEcCcchhHHhh-cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------c
Q 007850 428 IPETNDGDVKIVVGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------H 500 (587)
Q Consensus 428 ~p~~~~~~~~~l~~~~f~~~v~-~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------~ 500 (587)
..+++++..++-+.=. +-+...+|-|...-.+.-..+...+.++|+....+..+.++.||-+.=.. .
T Consensus 249 ------ptlrkl~~~~m~e~Wedd~~g~hIvaFaee~dpdG~efleilk~va~~nt~np~LsivwIDPD~fPllv~yWE~ 322 (383)
T PF01216_consen 249 ------PTLRKLRPEDMFETWEDDIDGIHIVAFAEEEDPDGFEFLEILKQVARDNTDNPDLSIVWIDPDDFPLLVPYWEK 322 (383)
T ss_dssp -------SEEE--GGGHHHHHHSSSSSEEEEEE--TTSHHHHHHHHHHHHHHHHCTT-TT--EEEE-GGG-HHHHHHHHH
T ss_pred ------hHhhhCChhhhhhhhcccCCCceEEEEecCCCCchHHHHHHHHHHHHhcCcCCceeEEEECCCCCchhHHHHHh
Confidence 4577888888555332 23456788888888999999999999999998887889999998765332 2
Q ss_pred cCCCC-cCcEEEEEeCCCcccCccccc-----cccCHHHHHHHHHhhCCCCCccC
Q 007850 501 RAKSD-GFPTILFFPAGNKSFDPINVD-----VDRTVVALYKFLKKNASIPFKIQ 549 (587)
Q Consensus 501 ~~~i~-~~Pt~~~~~~~~~~~~~~~~~-----g~~~~~~l~~~i~~~~~~~~~~~ 549 (587)
.|+|. .-|.|-+..-... ..+.+. ...+.+.|..||++.++-++...
T Consensus 323 tF~Idl~~PqIGvVnvtda--dsvW~dm~d~~d~pt~~~LedWieDVlsg~i~~e 375 (383)
T PF01216_consen 323 TFGIDLSRPQIGVVNVTDA--DSVWMDMDDDDDLPTAEELEDWIEDVLSGKINTE 375 (383)
T ss_dssp HHTT-TTS-EEEEEETTTS--EEEEC-STTTSS---HHHHHHHHHHHHCTCCTB-
T ss_pred hcCccccCCceeEEecccc--ccchhccCCcccCCcHHHHHHHHHHHhcCCCCCc
Confidence 34443 2399888865544 222333 24589999999999887666543
No 172
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=98.97 E-value=1.9e-09 Score=88.14 Aligned_cols=101 Identities=23% Similarity=0.309 Sum_probs=79.0
Q ss_pred eecCCCCccccccCCcccEEEEEEe-----ccchhhHHHHHHHHHHhcc-CceEEEEEEcCCcccccchhhhcCCcCCC-
Q 007850 309 TIFTRENAPSVFESPIKNQLLLFAV-----SNDSEKLLPVFEEAAKSFK-GKLIFVYVQMDNEDVGKPVSEYFGITGEA- 381 (587)
Q Consensus 309 ~~lt~~~~~~~~~~~~~~~il~~~~-----~~~~~~~~~~l~~vA~~~~-~~l~f~~vd~~~~~~~~~~~~~~gi~~~~- 381 (587)
.++|.++...++..+ .+++++.. ..+.+.+...++++|++|+ +++.|+++|.... ...++.||++...
T Consensus 2 ~~~~~en~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~---~~~l~~fgl~~~~~ 76 (111)
T cd03073 2 GHRTKDNRAQFTKKP--LVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDF---SHELEEFGLDFSGG 76 (111)
T ss_pred CeeccchHHHhccCC--eEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHH---HHHHHHcCCCcccC
Confidence 467778888776443 23333322 2446789999999999999 7999999998763 3478999999876
Q ss_pred -CcEEEEecCCCCccccCCCCC-CHHHHHHHHHHHh
Q 007850 382 -PKVLAYTGNDDAKKHILDGEL-TLDKIKTFGEDFL 415 (587)
Q Consensus 382 -~p~~~i~~~~~~~~y~~~~~~-t~e~i~~fi~~~~ 415 (587)
.|++++++..+ .+|.+.+++ |.++|.+|+++++
T Consensus 77 ~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f~ 111 (111)
T cd03073 77 EKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDFF 111 (111)
T ss_pred CCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHhC
Confidence 89999987654 899888889 9999999999874
No 173
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.97 E-value=4.1e-09 Score=82.47 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=63.4
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCH
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (587)
+++..+..|+++||++|....+.+.++++.+. ++.+..+|.++.++++.+|+|.++|++++ +|.. .+.|..+.
T Consensus 11 ~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~----~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-~~~G~~~~ 83 (89)
T cd03026 11 NGPINFETYVSLSCHNCPDVVQALNLMAVLNP----NIEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-FGFGRMTL 83 (89)
T ss_pred CCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC----CceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-EEeCCCCH
Confidence 35567999999999999999999999997753 49999999999999999999999999964 7743 33576665
Q ss_pred HHHH
Q 007850 189 DAIV 192 (587)
Q Consensus 189 ~~l~ 192 (587)
+++.
T Consensus 84 ~e~~ 87 (89)
T cd03026 84 EEIL 87 (89)
T ss_pred HHHh
Confidence 5543
No 174
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2e-08 Score=82.99 Aligned_cols=105 Identities=18% Similarity=0.287 Sum_probs=76.8
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHH---HHHHhhhcCCcEEEEEEeCCCc----------------HHHHHHcCCCCC
Q 007850 108 ENNKFVMVEFYAPWCGHCQALAPEYAA---AATELKSANESVVLAKVDATEE----------------NELAHEYDVQGF 168 (587)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~---~~~~~~~~~~~v~~~~vd~~~~----------------~~l~~~~~i~~~ 168 (587)
.++++.+++|-++.|++|-++...+.. +.+-+.+ ++.++.+|.... ++|++.|+|+++
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~---hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrst 116 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE---HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRST 116 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh---CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccC
Confidence 368899999999999999998877643 3334444 688888877532 489999999999
Q ss_pred cEEEEEe-CC-eeeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHh
Q 007850 169 PTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERV 215 (587)
Q Consensus 169 Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~ 215 (587)
||+++|+ .| ......|.+..+.+...++-..........+.+++...
T Consensus 117 PtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlkYVa~g~ykd~~~dedf~kk 165 (182)
T COG2143 117 PTFVFFDKTGKTILELPGYMPPEQFLAVLKYVADGKYKDTKTDEDFTKK 165 (182)
T ss_pred ceEEEEcCCCCEEEecCCCCCHHHHHHHHHHHHHHHHhhhccHHHHHHH
Confidence 9999997 77 67788999999988766655443334343333444433
No 175
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.95 E-value=2.6e-09 Score=113.59 Aligned_cols=99 Identities=27% Similarity=0.455 Sum_probs=77.3
Q ss_pred cCcchhHHhh---cCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCccc------cccCCCCcC
Q 007850 440 VGNNFDEIVL---DESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSDGF 507 (587)
Q Consensus 440 ~~~~f~~~v~---~~~~~v~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~------~~~~~i~~~ 507 (587)
+.++|++.+. ..+++|+|+|||+||++|+.+.+.. .++.+.+++ +.++++|.+.++ .+++++.++
T Consensus 459 s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~---~~~v~vDvt~~~~~~~~l~~~~~v~g~ 535 (571)
T PRK00293 459 TVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD---TVLLQADVTANNAEDVALLKHYNVLGL 535 (571)
T ss_pred CHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC---CEEEEEECCCCChhhHHHHHHcCCCCC
Confidence 3456777663 3468999999999999999998875 567777653 778889987643 257899999
Q ss_pred cEEEEEe-CCCcccCccccccccCHHHHHHHHHhhC
Q 007850 508 PTILFFP-AGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 508 Pt~~~~~-~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
||+++|+ +|+.+ +..++.|..+.+++.+++++..
T Consensus 536 Pt~~~~~~~G~~i-~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 536 PTILFFDAQGQEI-PDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred CEEEEECCCCCCc-ccccccCCCCHHHHHHHHHHhc
Confidence 9999996 56653 2458889999999999998753
No 176
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.92 E-value=5.7e-09 Score=90.50 Aligned_cols=86 Identities=14% Similarity=0.205 Sum_probs=62.8
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc-----------cc-c-ccC---CCCcCcEEEEEeC
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------NE-H-HRA---KSDGFPTILFFPA 515 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-----------~~-~-~~~---~i~~~Pt~~~~~~ 515 (587)
++..+|+|||+||++|++++|.+.+++++++ ..+..+.+|... .. . ..+ ++.++||.+++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~ 127 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNV 127 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeC
Confidence 4566999999999999999999999999874 245555665431 01 1 123 6789999999965
Q ss_pred -CCcccCccccccccCHHHHHHHHHhh
Q 007850 516 -GNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 516 -~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
|+.+ ...+.|..+.+++.+.|.+.
T Consensus 128 ~G~~i--~~~~~G~~s~~~l~~~I~~l 152 (153)
T TIGR02738 128 NTRKA--YPVLQGAVDEAELANRMDEI 152 (153)
T ss_pred CCCEE--EEEeecccCHHHHHHHHHHh
Confidence 4432 12578999999998887753
No 177
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.90 E-value=7.1e-10 Score=92.14 Aligned_cols=84 Identities=20% Similarity=0.373 Sum_probs=57.5
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHHHHH---HhcCCCcEEEEEEeCCcc----------------------ccccCCC
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAK---HLRGVDSIVIAKMDGTTN----------------------EHHRAKS 504 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~---~~~~~~~~~~~~id~~~~----------------------~~~~~~i 504 (587)
..+++++++|+++||++|+.+.+.+..... .+.. ++.++.++.... ....++|
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD--DFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGV 80 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC--ECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT-
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc--CeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCC
Confidence 467899999999999999999999986544 3333 345555554432 1246899
Q ss_pred CcCcEEEEEe-CCCcccCccccccccCHHHHHHHH
Q 007850 505 DGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 505 ~~~Pt~~~~~-~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
.++||++++. +|+.+. ++.|..+.++|.++|
T Consensus 81 ~gtPt~~~~d~~G~~v~---~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 81 NGTPTIVFLDKDGKIVY---RIPGYLSPEELLKML 112 (112)
T ss_dssp -SSSEEEECTTTSCEEE---EEESS--HHHHHHHH
T ss_pred CccCEEEEEcCCCCEEE---EecCCCCHHHHHhhC
Confidence 9999999995 566654 788999999998875
No 178
>PHA02125 thioredoxin-like protein
Probab=98.90 E-value=3.6e-09 Score=80.31 Aligned_cols=67 Identities=16% Similarity=0.337 Sum_probs=50.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccc-cCHH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVD-RTVV 532 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~-~~~~ 532 (587)
+++||++||++|+.+.|.|.++. +.++++|.+.+. ..+++|.++||++ .|+.+. ++.|. .+..
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~--------~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~~~~---~~~G~~~~~~ 67 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE--------YTYVDVDTDEGVELTAKHHIRSLPTLV---NTSTLD---RFTGVPRNVA 67 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh--------heEEeeeCCCCHHHHHHcCCceeCeEE---CCEEEE---EEeCCCCcHH
Confidence 78999999999999999997653 457788876654 4789999999987 455443 66673 4445
Q ss_pred HHHH
Q 007850 533 ALYK 536 (587)
Q Consensus 533 ~l~~ 536 (587)
+|.+
T Consensus 68 ~l~~ 71 (75)
T PHA02125 68 ELKE 71 (75)
T ss_pred HHHH
Confidence 5554
No 179
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=98.88 E-value=1.1e-08 Score=83.12 Aligned_cols=95 Identities=20% Similarity=0.350 Sum_probs=82.3
Q ss_pred cccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-ccCCceeEEecCChhHHHhcCCCCCCCCCeEEEecc---
Q 007850 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKK--- 278 (587)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~--- 278 (587)
+..+.+.++++.++...+.++||||.+.+...+..|..+| .++.++.|+++++.++++.+++ . |.+++|++
T Consensus 2 ~~~i~s~~~l~~f~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~-~----~~ivl~~p~~~ 76 (104)
T cd03069 2 SVELRTEAEFEKFLSDDDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTSDKQLLEKYGY-G----EGVVLFRPPRL 76 (104)
T ss_pred ccccCCHHHHHHHhccCCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEChHHHHHhcCC-C----CceEEEechhh
Confidence 4577888999999999999999999998888999999987 6779999999999999999987 4 78999954
Q ss_pred ---CCcceeeccCCCCChhHHHHHHHhc
Q 007850 279 ---ETEKISYFADGKFDKSTIADFVFSN 303 (587)
Q Consensus 279 ---~~~~~~~y~~g~~~~~~i~~fi~~~ 303 (587)
.++....| .|+++.+.|.+||..+
T Consensus 77 ~~k~de~~~~y-~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 77 SNKFEDSSVKF-DGDLDSSKIKKFIREN 103 (104)
T ss_pred hcccCcccccc-cCcCCHHHHHHHHHhh
Confidence 45666778 9999999999999875
No 180
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=98.88 E-value=1.5e-08 Score=82.05 Aligned_cols=98 Identities=18% Similarity=0.276 Sum_probs=84.2
Q ss_pred cccccchhHHHHhcc-cCCeEEEEEecCCCCcchHHHHHhc-ccCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccCC
Q 007850 203 IYNITTLDEAERVLT-SETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKET 280 (587)
Q Consensus 203 ~~~i~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~ 280 (587)
+..|.+.++++.+++ .++.++||||.+.+++.+..|..+| .++.++.|+++.+++++..+++.. |.+++++..+
T Consensus 2 v~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~ 77 (102)
T cd03066 2 VEIINSERELQAFENIEDDIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATFDSKVAKKLGLKM----NEVDFYEPFM 77 (102)
T ss_pred ceEcCCHHHHHHHhcccCCeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEECcHHHHHHcCCCC----CcEEEeCCCC
Confidence 467888899999999 8999999999998889999999988 567999999999999999988764 8899998756
Q ss_pred cceeeccCCCCChhHHHHHHHhcC
Q 007850 281 EKISYFADGKFDKSTIADFVFSNK 304 (587)
Q Consensus 281 ~~~~~y~~g~~~~~~i~~fi~~~~ 304 (587)
+....|..|.++.+.|..||..+.
T Consensus 78 e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 78 EEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCcccCCCCCCHHHHHHHHHHhc
Confidence 566667466788999999998764
No 181
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.87 E-value=6.2e-09 Score=99.70 Aligned_cols=89 Identities=13% Similarity=0.129 Sum_probs=69.6
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc-----------cccccCCCCcCcEEEEEeC-CCc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-----------NEHHRAKSDGFPTILFFPA-GNK 518 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-----------~~~~~~~i~~~Pt~~~~~~-~~~ 518 (587)
.++.+||+||++||++|+.+.|.|..+++.+. ..+..+.+|... .....++|.++|+++++.. |+.
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~ 242 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQ 242 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCE
Confidence 46799999999999999999999999999985 246566665532 2235789999999999986 555
Q ss_pred ccCccccccccCHHHHHHHHHhhCC
Q 007850 519 SFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 519 ~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
+. ....|..+.++|.+.|...++
T Consensus 243 v~--~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 243 FT--PIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred EE--EEEeCCCCHHHHHHHHHHHhc
Confidence 41 235588999999999887655
No 182
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.87 E-value=9.2e-09 Score=105.96 Aligned_cols=88 Identities=15% Similarity=0.255 Sum_probs=68.3
Q ss_pred hcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC----------------------------Cc--cc
Q 007850 449 LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG----------------------------TT--NE 498 (587)
Q Consensus 449 ~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~----------------------------~~--~~ 498 (587)
+..+++|+|.|||+||++|+.++|.|.++++.++. .++.++.|.. +. ..
T Consensus 53 lskGKpVvV~FWATWCppCk~emP~L~eL~~e~k~-~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~l 131 (521)
T PRK14018 53 LKKDKPTLIKFWASWCPLCLSELGETEKWAQDAKF-SSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTL 131 (521)
T ss_pred ccCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhcc-CCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHH
Confidence 35789999999999999999999999999998874 2344444432 11 11
Q ss_pred cccCCCCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHh
Q 007850 499 HHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 499 ~~~~~i~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
...++|.++||++++ ++|+.+. ++.|..+.++|.++|+.
T Consensus 132 ak~fgV~giPTt~IIDkdGkIV~---~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 132 AQSLNISVYPSWAIIGKDGDVQR---IVKGSISEAQALALIRN 171 (521)
T ss_pred HHHcCCCCcCeEEEEcCCCeEEE---EEeCCCCHHHHHHHHHH
Confidence 246799999999766 6777665 78899999999999993
No 183
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.87 E-value=4.4e-08 Score=81.41 Aligned_cols=93 Identities=15% Similarity=0.295 Sum_probs=74.8
Q ss_pred HHHHhCCCeEEEEEECCCChhhhhhhHH-H--HHHHHHhhhcCCcEEEEEEeCC--CcHHHHHHcCCCCCcEEEEEe--C
Q 007850 104 SDVIENNKFVMVEFYAPWCGHCQALAPE-Y--AAAATELKSANESVVLAKVDAT--EENELAHEYDVQGFPTIYFFV--D 176 (587)
Q Consensus 104 ~~~~~~~~~~~v~f~a~wC~~C~~~~p~-~--~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~i~~~Pt~~~~~--~ 176 (587)
+...+++|+++|+|+++||++|+.+... | .++.+.++. ++.+..+|.+ +...++..|++.++|+++++. +
T Consensus 11 ~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~---~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~ 87 (114)
T cd02958 11 QEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE---NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRT 87 (114)
T ss_pred HHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh---CEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCcc
Confidence 3444678999999999999999998764 3 445555555 6888888886 346789999999999999996 5
Q ss_pred C-eeeEeecCCCHHHHHHHHHHhc
Q 007850 177 G-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 177 g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
| ...+..|..+.+.+...+++..
T Consensus 88 g~~l~~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 88 GEVLKVWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred CcEeEEEcCCCCHHHHHHHHHHHH
Confidence 7 6778999999999998887754
No 184
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.84 E-value=1.9e-08 Score=80.97 Aligned_cols=95 Identities=25% Similarity=0.467 Sum_probs=82.9
Q ss_pred ccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-ccCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccCCcc
Q 007850 204 YNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEK 282 (587)
Q Consensus 204 ~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~ 282 (587)
..+.+.++++.++...+.++||||.+..+..+..|..+| .++..+.|+.+++.++++++++.. |.+++|++.++.
T Consensus 2 ~~i~s~~~l~~~~~~~~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~~~~~~~~~~~~~----~~i~l~~~~~~~ 77 (97)
T cd02981 2 KELTSKEELEKFLDKDDVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTSDKEVAKKLKVKP----GSVVLFKPFEEE 77 (97)
T ss_pred eecCCHHHHHHHhccCCeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEChHHHHHHcCCCC----CceEEeCCcccC
Confidence 467788899999999999999999988888999999987 567899999999999999987653 899999987777
Q ss_pred eeeccCCCCChhHHHHHHHhc
Q 007850 283 ISYFADGKFDKSTIADFVFSN 303 (587)
Q Consensus 283 ~~~y~~g~~~~~~i~~fi~~~ 303 (587)
...| .|.++.++|.+||..+
T Consensus 78 ~~~y-~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 78 PVEY-DGEFTEESLVEFIKDN 97 (97)
T ss_pred CccC-CCCCCHHHHHHHHHhC
Confidence 7889 8988899999999754
No 185
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.84 E-value=7.9e-09 Score=87.13 Aligned_cols=73 Identities=26% Similarity=0.525 Sum_probs=62.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-------------------------HHHHHc
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------------------------ELAHEY 163 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------------------------~l~~~~ 163 (587)
.||.+.++|.|.||+||+.+-|.+.++++++++.+..+.++-|+.+.+. +++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 5799999999999999999999999999999987666777777765432 788899
Q ss_pred CCCCCcEEEEEe-CCeeeE
Q 007850 164 DVQGFPTIYFFV-DGQHKA 181 (587)
Q Consensus 164 ~i~~~Pt~~~~~-~g~~~~ 181 (587)
+|.++|+++++. +|..+.
T Consensus 112 ~v~~iP~l~i~~~dG~~v~ 130 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVVT 130 (157)
T ss_pred ccCcCceeEEecCCCCEeh
Confidence 999999999996 774443
No 186
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.83 E-value=2.3e-08 Score=90.66 Aligned_cols=89 Identities=15% Similarity=0.230 Sum_probs=64.7
Q ss_pred CCCeE-EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------c-H---HH-HHHc------------
Q 007850 109 NNKFV-MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------E-N---EL-AHEY------------ 163 (587)
Q Consensus 109 ~~~~~-~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------~-~---~l-~~~~------------ 163 (587)
.|+++ ++.+||+||++|+.++|.|.++++++++ .++.++.|+|+. + . .+ .+++
T Consensus 39 ~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~--~gv~vv~vs~~~~~~~~~~~~~~~~~f~~~~~~~~fpv~~d~d~ 116 (183)
T PTZ00256 39 KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKS--QGLEILAFPCNQFMEQEPWDEPEIKEYVQKKFNVDFPLFQKIEV 116 (183)
T ss_pred CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhh--CCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCCCceEEec
Confidence 57754 4566999999999999999999999987 358888988641 0 1 11 1121
Q ss_pred ------------------------CCCCCcE---EEEEe-CC-eeeEeecCCCHHHHHHHHHHhc
Q 007850 164 ------------------------DVQGFPT---IYFFV-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 164 ------------------------~i~~~Pt---~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
++.++|+ +++++ +| .+.+|.|..+.+.+.+.|.+.+
T Consensus 117 ~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 117 NGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred CCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 2346784 57774 88 6678889999888888887765
No 187
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.80 E-value=5.9e-08 Score=87.22 Aligned_cols=91 Identities=19% Similarity=0.339 Sum_probs=70.9
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-----------------------------cHHH
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-----------------------------ENEL 159 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------------~~~l 159 (587)
+++++||+||++||+.|...++.+.++++++.+ .++.++.|.++. +..+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~--~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~ 101 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA--KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEV 101 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh--CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHH
Confidence 678999999999999999999999999999975 358888887653 1256
Q ss_pred HHHcCCCCCcEEEEEe-CCeeeEee-----------cCCCHHHHHHHHHHhcCCC
Q 007850 160 AHEYDVQGFPTIYFFV-DGQHKAYN-----------GGRTKDAIVTWIKKKIGPG 202 (587)
Q Consensus 160 ~~~~~i~~~Pt~~~~~-~g~~~~~~-----------g~~~~~~l~~~i~~~~~~~ 202 (587)
++.|++...|++++++ +|++. |. +..+.+.+.+.|...+...
T Consensus 102 ~~~~~v~~~P~~~lid~~G~v~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 155 (171)
T cd02969 102 AKAYGAACTPDFFLFDPDGKLV-YRGRIDDSRPGNDPPVTGRDLRAALDALLAGK 155 (171)
T ss_pred HHHcCCCcCCcEEEECCCCeEE-EeecccCCcccccccccHHHHHHHHHHHHcCC
Confidence 7788999999999996 66432 32 2345677888888777544
No 188
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.79 E-value=2.4e-08 Score=83.10 Aligned_cols=75 Identities=24% Similarity=0.433 Sum_probs=55.3
Q ss_pred chhHHhhcCCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCCcEEEEEEeCCcccc--c--------cCCCCcCcE
Q 007850 443 NFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH--H--------RAKSDGFPT 509 (587)
Q Consensus 443 ~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~~--~--------~~~i~~~Pt 509 (587)
.+... .+.+++++|.|+++||++|+.|.+. | .+++..+.. .+.++.+|.+.+.. . .+++.++|+
T Consensus 7 al~~A-k~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~--~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt 83 (124)
T cd02955 7 AFEKA-RREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE--NFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPL 83 (124)
T ss_pred HHHHH-HHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC--CEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCE
Confidence 34443 4678999999999999999999873 3 246666544 58889999876432 1 258899999
Q ss_pred EEEE-eCCCccc
Q 007850 510 ILFF-PAGNKSF 520 (587)
Q Consensus 510 ~~~~-~~~~~~~ 520 (587)
++++ ++|+.+.
T Consensus 84 ~vfl~~~G~~~~ 95 (124)
T cd02955 84 NVFLTPDLKPFF 95 (124)
T ss_pred EEEECCCCCEEe
Confidence 9999 5666653
No 189
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.78 E-value=3.6e-08 Score=76.42 Aligned_cols=70 Identities=33% Similarity=0.604 Sum_probs=53.4
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007850 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 102 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (587)
-+..+.+++++++|.|+++||++|+.+...+ .++.+.+.. ++.++.||.+.........+ .++|++++++
T Consensus 9 al~~A~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~---~fv~v~vd~~~~~~~~~~~~-~~~P~~~~ld 81 (82)
T PF13899_consen 9 ALAEAKKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK---NFVLVKVDVDDEDPNAQFDR-QGYPTFFFLD 81 (82)
T ss_dssp HHHHHHHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH---CSEEEEEETTTHHHHHHHHH-CSSSEEEEEE
T ss_pred HHHHHHHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC---CEEEEEEEcCCCChhHHhCC-ccCCEEEEeC
Confidence 3445567899999999999999999998887 445554555 79999999987655432222 6799999985
No 190
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.77 E-value=1.7e-09 Score=96.04 Aligned_cols=103 Identities=31% Similarity=0.570 Sum_probs=92.6
Q ss_pred CeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 94 DVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 94 ~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
.++.++..|+...+.. -+++.|+|+|||.|+...|+|+..+.--.+ -+|.++.||.+.++.|.-+|-+...||++-
T Consensus 25 ~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~d--L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLD--LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCC--CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 5788999999999853 479999999999999999999999876555 579999999999999999999999999999
Q ss_pred EeCCeeeEeecCCCHHHHHHHHHHhcC
Q 007850 174 FVDGQHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 174 ~~~g~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
.++|...+|.|.++..++..|+...-.
T Consensus 101 vkDGeFrrysgaRdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 101 VKDGEFRRYSGARDKNDFISFEEHREW 127 (248)
T ss_pred eeccccccccCcccchhHHHHHHhhhh
Confidence 999999999999999999999986543
No 191
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.77 E-value=2.2e-08 Score=85.67 Aligned_cols=68 Identities=18% Similarity=0.303 Sum_probs=51.5
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC------CcEEEEEEeCCcccc-------------------------
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNEH------------------------- 499 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~------~~~~~~~id~~~~~~------------------------- 499 (587)
.+++++|+|||+||++|+.++|.|.++.+.+.+. .++.++.|+.+.+..
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 4789999999999999999999999998877542 246677666553210
Q ss_pred --ccCCCCcCcEEEEEeCCCc
Q 007850 500 --HRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 500 --~~~~i~~~Pt~~~~~~~~~ 518 (587)
..|++.++|+++++....+
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 2357889999999964443
No 192
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.76 E-value=3.7e-08 Score=79.01 Aligned_cols=67 Identities=25% Similarity=0.500 Sum_probs=50.2
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-------------------------ccCCC
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-------------------------HRAKS 504 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~-------------------------~~~~i 504 (587)
+++++|+|||+||++|+...|.+.++.+.++...++.++.|..+... . ..+++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 57899999999999999999999999999994346666666665421 1 22688
Q ss_pred CcCcEEEEEeCCCc
Q 007850 505 DGFPTILFFPAGNK 518 (587)
Q Consensus 505 ~~~Pt~~~~~~~~~ 518 (587)
.++|+++++..+++
T Consensus 81 ~~iP~~~lld~~G~ 94 (95)
T PF13905_consen 81 NGIPTLVLLDPDGK 94 (95)
T ss_dssp TSSSEEEEEETTSB
T ss_pred CcCCEEEEECCCCC
Confidence 89999999876543
No 193
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.76 E-value=6.4e-08 Score=87.34 Aligned_cols=101 Identities=19% Similarity=0.306 Sum_probs=75.7
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------------
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN----------------- 497 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----------------- 497 (587)
.+..++++.+.-... .+++++|+||++||++|+...+.+.++.+++.+. ++.++.++++..
T Consensus 45 ~~~~~~g~~~~l~~~-~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~-~~~vi~i~~d~~~~~~~~~~~~~~~~~~~ 122 (173)
T PRK03147 45 VLTDLEGKKIELKDL-KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEK-GVEIIAVNVDETELAVKNFVNRYGLTFPV 122 (173)
T ss_pred EeecCCCCEEeHHHc-CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcC-CeEEEEEEcCCCHHHHHHHHHHhCCCceE
Confidence 455667776654332 4688999999999999999999999999998763 466666665422
Q ss_pred -------ccccCCCCcCcEEEEEe-CCCcccCccccccccCHHHHHHHHHh
Q 007850 498 -------EHHRAKSDGFPTILFFP-AGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 498 -------~~~~~~i~~~Pt~~~~~-~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
....+++..+|+++++. +|+.+. .+.|..+.+++.+++++
T Consensus 123 ~~d~~~~~~~~~~v~~~P~~~lid~~g~i~~---~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 123 AIDKGRQVIDAYGVGPLPTTFLIDKDGKVVK---VITGEMTEEQLEEYLEK 170 (173)
T ss_pred EECCcchHHHHcCCCCcCeEEEECCCCcEEE---EEeCCCCHHHHHHHHHH
Confidence 12568899999998885 444432 67888999999998874
No 194
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.75 E-value=3.4e-08 Score=81.97 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=52.1
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHH---HHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe-CC-
Q 007850 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYA---AAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV-DG- 177 (587)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~---~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g- 177 (587)
+....+++|+++|.|++.||++|+.+...+- ++.+.++. ++..+.++.+....-....+ .++||++|+. +|
T Consensus 16 l~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~---~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~g~ 91 (130)
T cd02960 16 LYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE---DFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPSLT 91 (130)
T ss_pred HHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh---CeEEEEEEeccCCCCcCccC-cccCeEEEECCCCC
Confidence 3445578999999999999999999988753 34444433 46666666542211111234 6899999996 66
Q ss_pred eeeEeecCC
Q 007850 178 QHKAYNGGR 186 (587)
Q Consensus 178 ~~~~~~g~~ 186 (587)
.+.+..|..
T Consensus 92 vi~~i~Gy~ 100 (130)
T cd02960 92 VRADITGRY 100 (130)
T ss_pred Ccccccccc
Confidence 444555543
No 195
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.75 E-value=3.3e-08 Score=89.81 Aligned_cols=85 Identities=21% Similarity=0.304 Sum_probs=61.9
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cc-----------------------cccCCC
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NE-----------------------HHRAKS 504 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~-----------------------~~~~~i 504 (587)
..+++++|+||++||++|+.++|.+.++.+. ++.++.++.+. .. ...|++
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~-----~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv 140 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ-----GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGV 140 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc-----CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCC
Confidence 4688999999999999999999999988652 24444454322 11 124688
Q ss_pred CcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 505 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 505 ~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
.++|+.+++ ++|+... ++.|..+.+.+.++|+...
T Consensus 141 ~~~P~t~vid~~G~i~~---~~~G~~~~~~l~~~i~~~~ 176 (185)
T PRK15412 141 YGAPETFLIDGNGIIRY---RHAGDLNPRVWESEIKPLW 176 (185)
T ss_pred CcCCeEEEECCCceEEE---EEecCCCHHHHHHHHHHHH
Confidence 999977777 5665554 7889888888888877654
No 196
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.75 E-value=3.1e-08 Score=84.73 Aligned_cols=68 Identities=28% Similarity=0.529 Sum_probs=51.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcE--EEEEEeCCcc------------------------ccccCC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSI--VIAKMDGTTN------------------------EHHRAK 503 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~--~~~~id~~~~------------------------~~~~~~ 503 (587)
.+++++|+||++||++|+.+.|.+.++.+.+... .++ .++.+|.... ....|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 4789999999999999999999999999888653 244 4444443321 124689
Q ss_pred CCcCcEEEEEeCCCc
Q 007850 504 SDGFPTILFFPAGNK 518 (587)
Q Consensus 504 i~~~Pt~~~~~~~~~ 518 (587)
+.++|+++++..+++
T Consensus 97 v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 IEGIPTLIILDADGE 111 (131)
T ss_pred CCCCCEEEEECCCCC
Confidence 999999999964444
No 197
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.74 E-value=3.4e-08 Score=84.55 Aligned_cols=69 Identities=26% Similarity=0.487 Sum_probs=51.6
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCccc--------------------------c-ccC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTNE--------------------------H-HRA 502 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~~--------------------------~-~~~ 502 (587)
.++.++|+||++||++|+.+.|.+.++.+.+++. .++.++.++.+.+. . ..+
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4789999999999999999999999999988764 24444444433211 1 348
Q ss_pred CCCcCcEEEEEeCCCcc
Q 007850 503 KSDGFPTILFFPAGNKS 519 (587)
Q Consensus 503 ~i~~~Pt~~~~~~~~~~ 519 (587)
++.++|+++++..++++
T Consensus 96 ~v~~iPt~~lid~~G~i 112 (132)
T cd02964 96 KVEGIPTLVVLKPDGDV 112 (132)
T ss_pred CCCCCCEEEEECCCCCE
Confidence 89999999999654443
No 198
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.73 E-value=2.3e-08 Score=85.10 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=59.0
Q ss_pred cchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC-------------------------Cc
Q 007850 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG-------------------------TT 496 (587)
Q Consensus 442 ~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~-------------------------~~ 496 (587)
..+..... .+++++|+||++||++|+.+.|.+.++.+.+. +.++.++. ..
T Consensus 16 ~~~~~~~~-~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~----~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 90 (127)
T cd03010 16 KTLTSADL-KGKPYLLNVWASWCAPCREEHPVLMALARQGR----VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDG 90 (127)
T ss_pred ccccHHHc-CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC----cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcc
Confidence 33443332 37899999999999999999999999987752 44444432 22
Q ss_pred cccccCCCCcCcEEEEE-eCCCcccCccccccccCHHHH
Q 007850 497 NEHHRAKSDGFPTILFF-PAGNKSFDPINVDVDRTVVAL 534 (587)
Q Consensus 497 ~~~~~~~i~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l 534 (587)
..+..+++.++|+.+++ ++|+.+. ++.|..+.+.|
T Consensus 91 ~~~~~~~v~~~P~~~~ld~~G~v~~---~~~G~~~~~~~ 126 (127)
T cd03010 91 RVGIDLGVYGVPETFLIDGDGIIRY---KHVGPLTPEVW 126 (127)
T ss_pred hHHHhcCCCCCCeEEEECCCceEEE---EEeccCChHhc
Confidence 22346899999966666 5676554 77788776543
No 199
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.72 E-value=6.2e-08 Score=87.08 Aligned_cols=85 Identities=22% Similarity=0.283 Sum_probs=62.9
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC-------------------------CccccccCCC
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG-------------------------TTNEHHRAKS 504 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~-------------------------~~~~~~~~~i 504 (587)
..+++++|+||++||++|+.+.|.++++.+. ++.++.++. .......|++
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~-----~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v 135 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD-----GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGV 135 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc-----CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCC
Confidence 4578999999999999999999999988753 133333332 1112245788
Q ss_pred CcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 505 DGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 505 ~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
.++|+.+++ ++|+.+. ++.|..+.+++.+++.+..
T Consensus 136 ~~~P~~~~id~~G~i~~---~~~G~~~~~~l~~~l~~~~ 171 (173)
T TIGR00385 136 YGAPETFLVDGNGVILY---RHAGPLNNEVWTEGFLPAM 171 (173)
T ss_pred eeCCeEEEEcCCceEEE---EEeccCCHHHHHHHHHHHh
Confidence 899976666 5676654 6789899999999998765
No 200
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.71 E-value=5.8e-08 Score=82.12 Aligned_cols=92 Identities=25% Similarity=0.337 Sum_probs=66.0
Q ss_pred EEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC----------------------
Q 007850 437 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG---------------------- 494 (587)
Q Consensus 437 ~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~---------------------- 494 (587)
..++++.+..... .+++++|+||++||++|+.+.|.+..+++.+. +..+.+|.
T Consensus 6 ~~~~g~~~~~~~~-~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~----~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d 80 (123)
T cd03011 6 TTLDGEQFDLESL-SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP----VVSVALRSGDDGAVARFMQKKGYGFPVIND 80 (123)
T ss_pred ecCCCCEeeHHHh-CCCEEEEEEECCcChhhhhhChHHHHHHhhCC----EEEEEccCCCHHHHHHHHHHcCCCccEEEC
Confidence 3455556665543 45899999999999999999999999987732 33333322
Q ss_pred -CccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHH
Q 007850 495 -TTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYK 536 (587)
Q Consensus 495 -~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~ 536 (587)
+......+++.++|+++++.+++... ++.|..+.+.|.+
T Consensus 81 ~~~~~~~~~~i~~~P~~~vid~~gi~~---~~~g~~~~~~~~~ 120 (123)
T cd03011 81 PDGVISARWGVSVTPAIVIVDPGGIVF---VTTGVTSEWGLRL 120 (123)
T ss_pred CCcHHHHhCCCCcccEEEEEcCCCeEE---EEeccCCHHHHHh
Confidence 12233578999999999997776443 6778888888764
No 201
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=98.70 E-value=9.4e-08 Score=77.75 Aligned_cols=96 Identities=19% Similarity=0.317 Sum_probs=80.7
Q ss_pred cccccchhHHHHhcccC-CeEEEEEecCCCCcchHHHHHhc-ccCCceeEEecCChhHHHhcCCCCCCCCCeEEEec---
Q 007850 203 IYNITTLDEAERVLTSE-TKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVK--- 277 (587)
Q Consensus 203 ~~~i~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~--- 277 (587)
+..+.+.++++.++... +.++||||.+.....+..|..+| .++.++.|+++++.++...+++.. |.+++|+
T Consensus 2 v~~i~s~~ele~f~~~~~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~~~~~~~~~~~~~----~~vvl~rp~~ 77 (107)
T cd03068 2 SKQLQTLKQVQEFLRDGDDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTFDSEIFKSLKVSP----GQLVVFQPEK 77 (107)
T ss_pred ceEcCCHHHHHHHHhcCCCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEChHHHHHhcCCCC----CceEEECcHH
Confidence 56788999999999887 99999999988888899999887 677999999999999999998764 7899994
Q ss_pred ---cCCcceeeccCCC-CChhH-HHHHHHhc
Q 007850 278 ---KETEKISYFADGK-FDKST-IADFVFSN 303 (587)
Q Consensus 278 ---~~~~~~~~y~~g~-~~~~~-i~~fi~~~ 303 (587)
..++....| .|. .+.++ |.+||..|
T Consensus 78 ~~~k~e~~~~~~-~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVL-NKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeee-eccccchHHHHHHHHhcC
Confidence 455677888 777 67655 99999865
No 202
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.68 E-value=1.4e-07 Score=81.87 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=66.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC---------------------cHHHHHHcCCC
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------ENELAHEYDVQ 166 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~~~l~~~~~i~ 166 (587)
.+++++|+|| +.||+.|...+|.+.++++++.+. ++.++.|..+. ...+.+.|++.
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~--~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 99 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKAL--GAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVW 99 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCc
Confidence 4789999999 589999999999999999998763 46677665542 23677788888
Q ss_pred CC---------cEEEEEe-CC-eeeEeecCCCHHHHHHHH
Q 007850 167 GF---------PTIYFFV-DG-QHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 167 ~~---------Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i 195 (587)
.. |++++++ +| ....+.|....+.+.+-+
T Consensus 100 ~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 100 GEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred cccccccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 87 8999996 78 567888888777766543
No 203
>smart00594 UAS UAS domain.
Probab=98.66 E-value=3.8e-07 Score=76.58 Aligned_cols=88 Identities=10% Similarity=0.252 Sum_probs=67.9
Q ss_pred HHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhhcCCcEEEEEEeCCC--cHHHHHHcCCCCCcEEEEEe-CC-
Q 007850 105 DVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATE--ENELAHEYDVQGFPTIYFFV-DG- 177 (587)
Q Consensus 105 ~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~-~g- 177 (587)
...+++|+++|+|+++||++|+.+.... .++.+.++. ++.+..+|.+. ...++..|++.++|++.++. +|
T Consensus 22 ~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~---~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g 98 (122)
T smart00594 22 EASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE---NFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTG 98 (122)
T ss_pred HHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc---CEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCC
Confidence 3446789999999999999999987653 344445544 68887888664 35789999999999999995 44
Q ss_pred -e----eeEeecCCCHHHHHHHH
Q 007850 178 -Q----HKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 178 -~----~~~~~g~~~~~~l~~~i 195 (587)
. ..+..|..+.+++..++
T Consensus 99 ~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 99 QRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ceeEEEeccccCCCCHHHHHHhh
Confidence 2 34778999999988765
No 204
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.66 E-value=2.1e-07 Score=95.01 Aligned_cols=95 Identities=27% Similarity=0.482 Sum_probs=77.6
Q ss_pred hHHHHHhCCC--eEEEEEECCCChhhhhhhHHHH-HHHHHhhhcCCcEEEEEEeCCCc----HHHHHHcCCCCCcEEEEE
Q 007850 102 NFSDVIENNK--FVMVEFYAPWCGHCQALAPEYA-AAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFF 174 (587)
Q Consensus 102 ~~~~~~~~~~--~~~v~f~a~wC~~C~~~~p~~~-~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~ 174 (587)
.+++.+.+++ +++|+|||+||-.||...+..- +.....+- .++...++|.+++ .++.++||+-+.|++++|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~--~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~~~ff 541 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQAL--QDVVLLQADVTANDPAITALLKRLGVFGVPTYLFF 541 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhc--CCeEEEEeeecCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 7788887766 9999999999999999988764 32222222 3599999999876 578889999999999999
Q ss_pred e-CC-eeeEeecCCCHHHHHHHHHHh
Q 007850 175 V-DG-QHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 175 ~-~g-~~~~~~g~~~~~~l~~~i~~~ 198 (587)
. +| ......|.++.+.+.+++++.
T Consensus 542 ~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 542 GPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCCCCcCcCCcceecHHHHHHHHHHh
Confidence 8 66 555689999999999999875
No 205
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.62 E-value=6.8e-08 Score=71.69 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=44.9
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEE
Q 007850 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILF 512 (587)
Q Consensus 455 v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~ 512 (587)
-+++|+++||++|+.+.+.+++++.... .+.+..+|.+.+. ...+++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~---~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP---NISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC---ceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 3678999999999999999999987643 4777777776543 47899999999876
No 206
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.61 E-value=3.1e-07 Score=77.76 Aligned_cols=67 Identities=24% Similarity=0.564 Sum_probs=57.2
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---------------------HHHHHHcCCC
Q 007850 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (587)
Q Consensus 109 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~ 166 (587)
.+++++|.||++ ||++|+...+.|.++..+++. .++.++.|..+.. ..+++.|++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~--~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 101 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD--KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIE 101 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT--TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc--ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCc
Confidence 579999999999 999999999999999999986 3588888887543 2677888888
Q ss_pred ------CCcEEEEEeCC
Q 007850 167 ------GFPTIYFFVDG 177 (587)
Q Consensus 167 ------~~Pt~~~~~~g 177 (587)
.+|++++++.+
T Consensus 102 ~~~~~~~~p~~~lid~~ 118 (124)
T PF00578_consen 102 DEKDTLALPAVFLIDPD 118 (124)
T ss_dssp ETTTSEESEEEEEEETT
T ss_pred cccCCceEeEEEEECCC
Confidence 89999999744
No 207
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.60 E-value=9.7e-08 Score=108.77 Aligned_cols=89 Identities=15% Similarity=0.263 Sum_probs=71.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC-----Cc------------------------ccccc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG-----TT------------------------NEHHR 501 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~-----~~------------------------~~~~~ 501 (587)
.+++|+|.|||+||++|+...|.|+++.+++++. .+.++.+.. .. .....
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~-~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQ-PFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCC-CeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 4789999999999999999999999999999763 566666631 11 11135
Q ss_pred CCCCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhhCC
Q 007850 502 AKSDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 502 ~~i~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
+++.++|+++++ ++|+.+. ++.|....+.|.++|...+.
T Consensus 498 ~~V~~iPt~ilid~~G~iv~---~~~G~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIA---QLSGEGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEE---EEecccCHHHHHHHHHHHHH
Confidence 789999999999 6777664 78898888999999987643
No 208
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.60 E-value=1e-07 Score=79.42 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=30.1
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 483 (587)
.+++++|+||++||++|+.+.|.++++++.+.+
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~ 52 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD 52 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC
Confidence 478999999999999999999999999888755
No 209
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.59 E-value=3.1e-07 Score=76.27 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=72.2
Q ss_pred chhHHh---hcCCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEE
Q 007850 443 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 512 (587)
Q Consensus 443 ~f~~~v---~~~~~~v~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pt~~~ 512 (587)
+|++.+ .+.+++++|+|+++||++|+.+... | ..+.+.+.. .+.+..+|....+. ..+++.++|++++
T Consensus 5 s~~~a~~~Ak~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~--~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~ 82 (114)
T cd02958 5 SFEDAKQEAKSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE--NFIFWQCDIDSSEGQRFLQSYKVDKYPHIAI 82 (114)
T ss_pred CHHHHHHHHHhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh--CEEEEEecCCCccHHHHHHHhCccCCCeEEE
Confidence 344444 4567999999999999999999764 4 345555554 58888888876443 5679999999999
Q ss_pred Ee--CCCcccCccccccccCHHHHHHHHHhhC
Q 007850 513 FP--AGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 513 ~~--~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
+. +|+.+. ++.|..++++++..|++..
T Consensus 83 i~~~~g~~l~---~~~G~~~~~~f~~~L~~~~ 111 (114)
T cd02958 83 IDPRTGEVLK---VWSGNITPEDLLSQLIEFL 111 (114)
T ss_pred EeCccCcEeE---EEcCCCCHHHHHHHHHHHH
Confidence 95 465554 8889999999999888754
No 210
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.59 E-value=5.2e-07 Score=80.43 Aligned_cols=65 Identities=15% Similarity=0.333 Sum_probs=52.2
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-----------------------cHHHHHHcC
Q 007850 109 NNKFVMVEFYAPW-CGHCQALAPEYAAAATELKSANESVVLAKVDATE-----------------------ENELAHEYD 164 (587)
Q Consensus 109 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-----------------------~~~l~~~~~ 164 (587)
.|++++|+||++| |++|..++|.|.++++++. ++.++.|.++. ...+++.||
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~----~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~g 118 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD----NTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYG 118 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC----CcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhC
Confidence 5789999999999 9999999999999998873 47777776652 126777888
Q ss_pred CCCCc---------EEEEEe-CC
Q 007850 165 VQGFP---------TIYFFV-DG 177 (587)
Q Consensus 165 i~~~P---------t~~~~~-~g 177 (587)
+...| ++++++ +|
T Consensus 119 v~~~~~~~~g~~~r~tfvId~~G 141 (167)
T PRK00522 119 VAIAEGPLKGLLARAVFVLDENN 141 (167)
T ss_pred CeecccccCCceeeEEEEECCCC
Confidence 87777 888886 77
No 211
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.59 E-value=2.7e-07 Score=76.68 Aligned_cols=76 Identities=16% Similarity=0.297 Sum_probs=51.0
Q ss_pred chhHHh---hcCCCcEEEEEeCCCChhhhhhhHHHH---HHHHHhcCCCcEEEEEEeCCccc-cccCCCCcCcEEEEE-e
Q 007850 443 NFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTYN---KLAKHLRGVDSIVIAKMDGTTNE-HHRAKSDGFPTILFF-P 514 (587)
Q Consensus 443 ~f~~~v---~~~~~~v~v~f~~~~C~~C~~~~~~~~---~~~~~~~~~~~~~~~~id~~~~~-~~~~~i~~~Pt~~~~-~ 514 (587)
+|++.+ ...+++++|+||+.||++|+.+...+- ++.+.++. .++.+.++.+..+ ...-...++||++|+ +
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~--~Fv~V~l~~d~td~~~~~~g~~vPtivFld~ 88 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQE--DFIMLNLVHETTDKNLSPDGQYVPRIMFVDP 88 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHh--CeEEEEEEeccCCCCcCccCcccCeEEEECC
Confidence 455543 467899999999999999999998753 34555543 4666677765332 111133789999999 5
Q ss_pred CCCccc
Q 007850 515 AGNKSF 520 (587)
Q Consensus 515 ~~~~~~ 520 (587)
+|+.+.
T Consensus 89 ~g~vi~ 94 (130)
T cd02960 89 SLTVRA 94 (130)
T ss_pred CCCCcc
Confidence 555543
No 212
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.59 E-value=1.4e-07 Score=73.82 Aligned_cols=73 Identities=16% Similarity=0.103 Sum_probs=55.7
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007850 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 530 (587)
Q Consensus 453 ~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~ 530 (587)
..-+..|+++||++|....+.+.+++..+.+ +.+..+|.+.. ...+++|.++|++++ +|+. .+.|..+
T Consensus 13 pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~---i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~~-----~~~G~~~ 82 (89)
T cd03026 13 PINFETYVSLSCHNCPDVVQALNLMAVLNPN---IEHEMIDGALFQDEVEERGIMSVPAIFL--NGEL-----FGFGRMT 82 (89)
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHHCCC---ceEEEEEhHhCHHHHHHcCCccCCEEEE--CCEE-----EEeCCCC
Confidence 3458889999999999999999999987653 56666665544 468999999999975 6655 3568667
Q ss_pred HHHHH
Q 007850 531 VVALY 535 (587)
Q Consensus 531 ~~~l~ 535 (587)
.++++
T Consensus 83 ~~e~~ 87 (89)
T cd03026 83 LEEIL 87 (89)
T ss_pred HHHHh
Confidence 66654
No 213
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.59 E-value=4.1e-07 Score=75.55 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=85.4
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCC--CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEE
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTIL 511 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~ 511 (587)
...++..++++++ ......+|+|-.. .++.+-...-+|.++++.+.+ .++.++.+|++.+. ..+|+|.++||++
T Consensus 19 ~~~~~~~~~~~~~-~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~-~~v~~akVDiD~~~~LA~~fgV~siPTLl 96 (132)
T PRK11509 19 WTPVSESRLDDWL-TQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPD-YTWQVAIADLEQSEAIGDRFGVFRFPATL 96 (132)
T ss_pred CCccccccHHHHH-hCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcC-CceEEEEEECCCCHHHHHHcCCccCCEEE
Confidence 3456778899987 4455666666444 578899999999999999964 35788888887765 4799999999999
Q ss_pred EEeCCCcccCccccccccCHHHHHHHHHhhCCCC
Q 007850 512 FFPAGNKSFDPINVDVDRTVVALYKFLKKNASIP 545 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~~~ 545 (587)
+|++|+.+. ++.|..+.+++.++|.+++..+
T Consensus 97 ~FkdGk~v~---~i~G~~~k~~l~~~I~~~L~~~ 127 (132)
T PRK11509 97 VFTGGNYRG---VLNGIHPWAELINLMRGLVEPQ 127 (132)
T ss_pred EEECCEEEE---EEeCcCCHHHHHHHHHHHhcCc
Confidence 999999987 8889999999999999887754
No 214
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.57 E-value=1.4e-07 Score=96.09 Aligned_cols=104 Identities=25% Similarity=0.400 Sum_probs=78.3
Q ss_pred EEEcCc-chhHHhhc-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCc
Q 007850 437 KIVVGN-NFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFP 508 (587)
Q Consensus 437 ~~l~~~-~f~~~v~~-~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------~~~~i~~~P 508 (587)
+.++.. .+++.+.+ ++++|+|.|||+||..||.+++..-.-.+......++...+.|.+.|+. .++++-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 455555 67776532 3359999999999999999999776422222223469999999998875 578999999
Q ss_pred EEEEEeCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 509 TILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 509 t~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
++++|+.+.. ++....|..+.+.+.+++++..
T Consensus 537 ~~~ff~~~g~--e~~~l~gf~~a~~~~~~l~~~~ 568 (569)
T COG4232 537 TYLFFGPQGS--EPEILTGFLTADAFLEHLERAA 568 (569)
T ss_pred EEEEECCCCC--cCcCCcceecHHHHHHHHHHhc
Confidence 9999984444 2334899999999999998753
No 215
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.56 E-value=3e-07 Score=77.02 Aligned_cols=65 Identities=40% Similarity=0.757 Sum_probs=59.5
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-CcHHHHHHcC--CCCCcEEEEEeCC
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-EENELAHEYD--VQGFPTIYFFVDG 177 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-~~~~l~~~~~--i~~~Pt~~~~~~g 177 (587)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ..+.+...++ +..+|++.++.+|
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 99 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG---DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDG 99 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC---CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCc
Confidence 67999999999999999999999999999876 6899999997 7889999999 9999999988887
No 216
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.55 E-value=6.9e-07 Score=80.37 Aligned_cols=88 Identities=16% Similarity=0.312 Sum_probs=64.6
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc----------------------------HHH
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l 159 (587)
.|++++|+|| ++||++|....|.|.++++++.+. ++.++.|.++.. ..+
T Consensus 28 ~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~--~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~ 105 (173)
T cd03015 28 KGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL--NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKI 105 (173)
T ss_pred CCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhH
Confidence 5789999999 899999999999999999999873 466666655431 245
Q ss_pred HHHcCCC------CCcEEEEEe-CC-eeeEeec----CCCHHHHHHHHHHh
Q 007850 160 AHEYDVQ------GFPTIYFFV-DG-QHKAYNG----GRTKDAIVTWIKKK 198 (587)
Q Consensus 160 ~~~~~i~------~~Pt~~~~~-~g-~~~~~~g----~~~~~~l~~~i~~~ 198 (587)
.+.|++. ..|++++++ +| ....+.+ ..+.+++.+.|+..
T Consensus 106 ~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 106 SRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 5667775 578999996 77 4455533 23567777777654
No 217
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.54 E-value=2.5e-07 Score=76.89 Aligned_cols=79 Identities=24% Similarity=0.445 Sum_probs=59.0
Q ss_pred EcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc---------------------
Q 007850 439 VVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--------------------- 497 (587)
Q Consensus 439 l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------------------- 497 (587)
++++.+...-. .+++++|+||++||++|+...+.+.++...+.. ..+.++.++.+.+
T Consensus 7 ~~g~~~~~~~~-~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~ 84 (116)
T cd02966 7 LDGKPVSLSDL-KGKVVLVNFWASWCPPCRAEMPELEALAKEYKD-DGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLD 84 (116)
T ss_pred CCCCEeehHHc-CCCEEEEEeecccChhHHHHhHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEc
Confidence 44444444322 378999999999999999999999999999863 4577777777653
Q ss_pred ----ccccCCCCcCcEEEEEe-CCCcc
Q 007850 498 ----EHHRAKSDGFPTILFFP-AGNKS 519 (587)
Q Consensus 498 ----~~~~~~i~~~Pt~~~~~-~~~~~ 519 (587)
....|++.++|+++++. +|+.+
T Consensus 85 ~~~~~~~~~~~~~~P~~~l~d~~g~v~ 111 (116)
T cd02966 85 PDGELAKAYGVRGLPTTFLIDRDGRIR 111 (116)
T ss_pred CcchHHHhcCcCccceEEEECCCCcEE
Confidence 13567888999999995 45443
No 218
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.54 E-value=6.6e-07 Score=78.47 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (587)
++.+|+.||++||++|+.++|.|.++++++.+ .++.++.|+.+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~--~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDA--LGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHh--cCeEEEEEeCCCH
Confidence 44555556799999999999999999999976 3588888887654
No 219
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.54 E-value=7.7e-07 Score=80.92 Aligned_cols=86 Identities=21% Similarity=0.283 Sum_probs=63.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------------------------cHHHHHH
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------------------------ENELAHE 162 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 162 (587)
.|++++|+|| ++||++|..++|.|.++++++.+. ++.++.|.++. +..+++.
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~--gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~ 107 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKL--GVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRN 107 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhc--CCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHH
Confidence 5789999999 999999999999999999999764 45566665442 2367778
Q ss_pred cCCC------CCcEEEEEe-CC-eeeEeec----CCCHHHHHHHHH
Q 007850 163 YDVQ------GFPTIYFFV-DG-QHKAYNG----GRTKDAIVTWIK 196 (587)
Q Consensus 163 ~~i~------~~Pt~~~~~-~g-~~~~~~g----~~~~~~l~~~i~ 196 (587)
||+. ..|++++++ +| ....+.+ .+..+++.+.|+
T Consensus 108 ~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~ 153 (187)
T TIGR03137 108 FGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRKIK 153 (187)
T ss_pred hCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 8886 469999996 78 3333322 246677766664
No 220
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.53 E-value=1.1e-06 Score=77.38 Aligned_cols=81 Identities=22% Similarity=0.345 Sum_probs=60.3
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---------------------HHHHHHcCCC
Q 007850 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------NELAHEYDVQ 166 (587)
Q Consensus 109 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------~~l~~~~~i~ 166 (587)
++++++|+||++ ||+.|....+.+.++++.+++. ++.++.|..+.. ..+.+.|++.
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~--~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA--GVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGVW 106 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC--CCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCCC
Confidence 578999999987 6888999999999999999873 477777776432 2566778775
Q ss_pred CC------------cEEEEEe-CC-eeeEeecCCCHHHH
Q 007850 167 GF------------PTIYFFV-DG-QHKAYNGGRTKDAI 191 (587)
Q Consensus 167 ~~------------Pt~~~~~-~g-~~~~~~g~~~~~~l 191 (587)
.. |++++++ +| ....|.|....+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~~~~~~ 145 (154)
T PRK09437 107 GEKKFMGKTYDGIHRISFLIDADGKIEHVFDKFKTSNHH 145 (154)
T ss_pred cccccccccccCcceEEEEECCCCEEEEEEcCCCcchhH
Confidence 43 6777885 88 55678876555543
No 221
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.51 E-value=1e-06 Score=78.91 Aligned_cols=115 Identities=11% Similarity=0.185 Sum_probs=75.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC--------c---HHHHH-HcCCCCCcEEEEEe-
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--------E---NELAH-EYDVQGFPTIYFFV- 175 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--------~---~~l~~-~~~i~~~Pt~~~~~- 175 (587)
.|+++||.|||+||++|+ .+|.|+++++++++ .++.++++.|.. . ..+|+ ++++. +|-+-=+.
T Consensus 24 ~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~--~gl~Vlg~p~nqf~~qe~~~~~ei~~f~~~~~g~~-Fpv~~k~dv 99 (183)
T PRK10606 24 AGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD--QGFVVLGFPCNQFLGQEPGSDEEIKTYCRTTWGVT-FPMFSKIEV 99 (183)
T ss_pred CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh--CCeEEEEeeccccccCCCCCHHHHHHHHHHccCCC-ceeEEEEcc
Confidence 589999999999999997 58999999999987 359999999852 1 34565 57763 66543343
Q ss_pred CCeeeEeecCCCHHHHHHHHHHhcCCCc------------------ccccc-hhHHHHhcccCCeEEEEEecCCCCcch
Q 007850 176 DGQHKAYNGGRTKDAIVTWIKKKIGPGI------------------YNITT-LDEAERVLTSETKVVLGYLNSLVGSES 235 (587)
Q Consensus 176 ~g~~~~~~g~~~~~~l~~~i~~~~~~~~------------------~~i~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ 235 (587)
+|. ....+.+|+....+... ....+ .-++.+|+-..+..+|..|.....+..
T Consensus 100 nG~--------~~~pl~~~Lk~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~ 170 (183)
T PRK10606 100 NGE--------GRHPLYQKLIAAAPTAVAPEESGFYARMVSKGRAPLYPDDILWNFEKFLVGRDGQVIQRFSPDMTPED 170 (183)
T ss_pred CCC--------CCCHHHHHHHHhCCCCcCccccchhhhhhccccccccCCcccccCEEEEECCCCcEEEEECCCCCCCH
Confidence 442 23456667766553110 00001 135677887777777777776555543
No 222
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=1.5e-07 Score=82.47 Aligned_cols=81 Identities=19% Similarity=0.470 Sum_probs=70.0
Q ss_pred eEEc-ChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCC-----
Q 007850 95 VVVL-KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ----- 166 (587)
Q Consensus 95 v~~l-~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----- 166 (587)
+..+ +++.+++.+.. ...|+|.|+|.|.+.|++..|.|.+++.+|.. ....|++||....++.+.+|+|.
T Consensus 126 ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~--~~lkFGkvDiGrfpd~a~kfris~s~~s 203 (265)
T KOG0914|consen 126 IKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN--NLLKFGKVDIGRFPDVAAKFRISLSPGS 203 (265)
T ss_pred eeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC--CCCcccceeeccCcChHHheeeccCccc
Confidence 5555 55666666643 46799999999999999999999999999977 46999999999999999999885
Q ss_pred -CCcEEEEEeCC
Q 007850 167 -GFPTIYFFVDG 177 (587)
Q Consensus 167 -~~Pt~~~~~~g 177 (587)
..||+++|.+|
T Consensus 204 rQLPT~ilFq~g 215 (265)
T KOG0914|consen 204 RQLPTYILFQKG 215 (265)
T ss_pred ccCCeEEEEccc
Confidence 68999999999
No 223
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.49 E-value=5.6e-07 Score=79.41 Aligned_cols=86 Identities=13% Similarity=0.195 Sum_probs=61.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc----------cc---cccCCC--CcCcEEEEEeCCCccc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT----------NE---HHRAKS--DGFPTILFFPAGNKSF 520 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~----------~~---~~~~~i--~~~Pt~~~~~~~~~~~ 520 (587)
+|+||++||++|+.+.|.+.+++++++ ..+.-+.+|... .. ...|++ .++|+.+++....++
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i- 149 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLE- 149 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcE-
Confidence 777999999999999999999999974 244444444331 00 124563 699999999555443
Q ss_pred CccccccccCHHHHHHHHHhhCCC
Q 007850 521 DPINVDVDRTVVALYKFLKKNASI 544 (587)
Q Consensus 521 ~~~~~~g~~~~~~l~~~i~~~~~~ 544 (587)
....+.|..+.++|.+.|.+.+..
T Consensus 150 ~~~~~~G~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 150 ALPLLQGATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEEECCCCHHHHHHHHHHHHhh
Confidence 112588999999998888876654
No 224
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.49 E-value=6.5e-07 Score=67.79 Aligned_cols=68 Identities=13% Similarity=0.371 Sum_probs=52.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHH----HHHHcCCCCCcEEEEEeCCeeeEeecCCCHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~ 189 (587)
+..||++||++|+...+.|.+. ++.+..+|++.++. +++.+++.++|++++. |.. ..| .+.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~---------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~~--~~g-~~~~ 67 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK---------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HKI--IVG-FDPE 67 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC---------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CEE--Eee-CCHH
Confidence 5789999999999998887641 47788888887654 5667999999999874 543 555 5778
Q ss_pred HHHHHH
Q 007850 190 AIVTWI 195 (587)
Q Consensus 190 ~l~~~i 195 (587)
.|.+++
T Consensus 68 ~i~~~i 73 (74)
T TIGR02196 68 KLDQLL 73 (74)
T ss_pred HHHHHh
Confidence 888776
No 225
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.47 E-value=9.2e-07 Score=76.91 Aligned_cols=72 Identities=13% Similarity=0.213 Sum_probs=54.7
Q ss_pred CCCeEEEEEECCC-ChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-----------------------HHHHHHcC
Q 007850 109 NNKFVMVEFYAPW-CGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------------------NELAHEYD 164 (587)
Q Consensus 109 ~~~~~~v~f~a~w-C~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------------------~~l~~~~~ 164 (587)
.+++++|+||++| |++|+.++|.|.++++++. ++.++.|+.+.. ..+++.|+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~----~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~g 100 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD----NTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYG 100 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC----CCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhC
Confidence 5789999999999 6999999999999999874 477777776421 35666777
Q ss_pred CCC------CcEEEEEe-CC-eeeEeec
Q 007850 165 VQG------FPTIYFFV-DG-QHKAYNG 184 (587)
Q Consensus 165 i~~------~Pt~~~~~-~g-~~~~~~g 184 (587)
+.. .|++++++ +| ....+.|
T Consensus 101 v~~~~~~~~~~~~~iid~~G~I~~~~~~ 128 (143)
T cd03014 101 VLIKDLGLLARAVFVIDENGKVIYVELV 128 (143)
T ss_pred CeeccCCccceEEEEEcCCCeEEEEEEC
Confidence 753 68888886 78 4445544
No 226
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.43 E-value=2.6e-07 Score=71.60 Aligned_cols=64 Identities=27% Similarity=0.582 Sum_probs=49.0
Q ss_pred hcCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCccccc-cCCCCcCcEEEEEe
Q 007850 449 LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEHH-RAKSDGFPTILFFP 514 (587)
Q Consensus 449 ~~~~~~v~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~~-~~~i~~~Pt~~~~~ 514 (587)
.+.+++++|+|+++||++|+.+...+ ..+.+.+.. ++.++.+|.+..... .+...++|+++++.
T Consensus 14 ~~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~--~fv~v~vd~~~~~~~~~~~~~~~P~~~~ld 81 (82)
T PF13899_consen 14 KKEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK--NFVLVKVDVDDEDPNAQFDRQGYPTFFFLD 81 (82)
T ss_dssp HHHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH--CSEEEEEETTTHHHHHHHHHCSSSEEEEEE
T ss_pred HHcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC--CEEEEEEEcCCCChhHHhCCccCCEEEEeC
Confidence 46789999999999999999999887 345553443 588999998765542 23336799999985
No 227
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.42 E-value=2e-06 Score=79.15 Aligned_cols=89 Identities=19% Similarity=0.291 Sum_probs=65.5
Q ss_pred CCCeEEE-EEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC---------------------------cHHHH
Q 007850 109 NNKFVMV-EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELA 160 (587)
Q Consensus 109 ~~~~~~v-~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~ 160 (587)
.|++++| .||++||+.|..+++.|.++++++++. ++.++.|.++. +..++
T Consensus 26 ~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~--~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia 103 (202)
T PRK13190 26 KGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL--GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELA 103 (202)
T ss_pred CCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHH
Confidence 4676655 689999999999999999999999874 45666665542 23667
Q ss_pred HHcCCC------CCcEEEEEe-CCee-eEe----ecCCCHHHHHHHHHHhc
Q 007850 161 HEYDVQ------GFPTIYFFV-DGQH-KAY----NGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 161 ~~~~i~------~~Pt~~~~~-~g~~-~~~----~g~~~~~~l~~~i~~~~ 199 (587)
+.||+. .+|+++++. +|++ ... .+.++.+++.+.++...
T Consensus 104 ~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l~ 154 (202)
T PRK13190 104 REYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKALQ 154 (202)
T ss_pred HHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 778874 589999996 7733 222 35678899988887654
No 228
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.41 E-value=3e-06 Score=76.40 Aligned_cols=88 Identities=19% Similarity=0.283 Sum_probs=65.5
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-------------------------cHHHHHH
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-------------------------ENELAHE 162 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-------------------------~~~l~~~ 162 (587)
.|++++|+|| +.||+.|..+++.|.++++++.+. ++.++.|..+. +..+++.
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~--g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~ 107 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL--GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRN 107 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC--CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHH
Confidence 5789999999 999999999999999999999763 46666665442 3467888
Q ss_pred cCCC----CC--cEEEEEe-CCe-eeEee----cCCCHHHHHHHHHHh
Q 007850 163 YDVQ----GF--PTIYFFV-DGQ-HKAYN----GGRTKDAIVTWIKKK 198 (587)
Q Consensus 163 ~~i~----~~--Pt~~~~~-~g~-~~~~~----g~~~~~~l~~~i~~~ 198 (587)
||+. ++ |++++++ +|+ ...+. ..++.+++.+.+...
T Consensus 108 ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 108 FDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred cCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence 8883 56 9999996 773 23322 235778888777544
No 229
>smart00594 UAS UAS domain.
Probab=98.40 E-value=2.3e-06 Score=71.79 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=69.6
Q ss_pred CcchhHHh---hcCCCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEE
Q 007850 441 GNNFDEIV---LDESKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTI 510 (587)
Q Consensus 441 ~~~f~~~v---~~~~~~v~v~f~~~~C~~C~~~~~~~---~~~~~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pt~ 510 (587)
..+|++.+ .+.+|.++|+|+++||++|+.+.... .++.+.+.. ++.+..+|....+. ..+++.++|++
T Consensus 13 ~gs~~~a~~~Ak~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~--~fv~~~~dv~~~eg~~l~~~~~~~~~P~~ 90 (122)
T smart00594 13 QGSLEAAKQEASRQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE--NFIFWQVDVDTSEGQRVSQFYKLDSFPYV 90 (122)
T ss_pred eCCHHHHHHHHHhhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc--CEEEEEecCCChhHHHHHHhcCcCCCCEE
Confidence 34566654 45678999999999999999988754 335555544 58888888876654 57899999999
Q ss_pred EEEe-CCCc--ccCccccccccCHHHHHHHH
Q 007850 511 LFFP-AGNK--SFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 511 ~~~~-~~~~--~~~~~~~~g~~~~~~l~~~i 538 (587)
+++. .|.. ..-..+..|..++++++.+|
T Consensus 91 ~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 91 AIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred EEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 9994 4321 00123678999999998876
No 230
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.40 E-value=1.1e-06 Score=64.35 Aligned_cols=60 Identities=43% Similarity=0.798 Sum_probs=50.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHH---HcCCCCCcEEEEEeCC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAH---EYDVQGFPTIYFFVDG 177 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~---~~~i~~~Pt~~~~~~g 177 (587)
++.||++||++|+...+.+.++ .... .++.+..++++....... .+++.++|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN---KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC---CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 5789999999999999999998 3322 369999999998877665 7899999999999876
No 231
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.40 E-value=6.4e-06 Score=88.44 Aligned_cols=182 Identities=15% Similarity=0.119 Sum_probs=123.8
Q ss_pred ccEEEEEEec--cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCC-CCccccCCCC
Q 007850 325 KNQLLLFAVS--NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGND-DAKKHILDGE 401 (587)
Q Consensus 325 ~~~il~~~~~--~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~-~~~~y~~~~~ 401 (587)
+..+.+|.+. +.|.+..+.++++| ...+++.+...|... ...+...||+.. .|.+.+...+ ...-..|-|-
T Consensus 367 ~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~~---~~~~~~~~~v~~--~P~~~i~~~~~~~~~i~f~g~ 440 (555)
T TIGR03143 367 PVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRGE---EPESETLPKITK--LPTVALLDDDGNYTGLKFHGV 440 (555)
T ss_pred CEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEecccc---chhhHhhcCCCc--CCEEEEEeCCCcccceEEEec
Confidence 3456666664 25778888888888 566788888777654 345667888763 5888887433 2233456666
Q ss_pred CCHHHHHHHHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCcE-EEEEeCCCChhhhhhhHHHHHHHHH
Q 007850 402 LTLDKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKH 480 (587)
Q Consensus 402 ~t~e~i~~fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~v-~v~f~~~~C~~C~~~~~~~~~~~~~ 480 (587)
..-..+..||..+++-.-.+ ..++.+..+. +..=++++ +-.|.+++|++|......+++++..
T Consensus 441 P~G~Ef~s~i~~i~~~~~~~---------------~~l~~~~~~~-i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~ 504 (555)
T TIGR03143 441 PSGHELNSFILALYNAAGPG---------------QPLGEELLEK-IKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASL 504 (555)
T ss_pred CccHhHHHHHHHHHHhcCCC---------------CCCCHHHHHH-HHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHh
Confidence 67777888888877632211 2333333333 43445665 5567899999999999999999988
Q ss_pred hcCCCcEEEEEEeCC--ccccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHH
Q 007850 481 LRGVDSIVIAKMDGT--TNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 481 ~~~~~~~~~~~id~~--~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i 538 (587)
.++ +..-.+|.. .....+|+|.++|++++ +|+. .+.|..+.++|+.||
T Consensus 505 ~~~---i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~~-----~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 505 NPN---VEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQQ-----VYFGKKTIEEMLELI 554 (555)
T ss_pred CCC---ceEEEEECcccHHHHHhCCceecCEEEE--CCEE-----EEeeCCCHHHHHHhh
Confidence 653 444445544 44457999999999887 5543 477988999999886
No 232
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.38 E-value=1.2e-06 Score=76.04 Aligned_cols=46 Identities=22% Similarity=0.329 Sum_probs=39.1
Q ss_pred CCCeEEEEEECCCChh-hhhhhHHHHHHHHHhhhcC-CcEEEEEEeCC
Q 007850 109 NNKFVMVEFYAPWCGH-CQALAPEYAAAATELKSAN-ESVVLAKVDAT 154 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~-C~~~~p~~~~~~~~~~~~~-~~v~~~~vd~~ 154 (587)
.+++++|.||++||++ |....+.+.++++++++.+ .++.++.|.++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 6789999999999998 9999999999999997743 34777777664
No 233
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.36 E-value=1.1e-06 Score=74.59 Aligned_cols=68 Identities=19% Similarity=0.387 Sum_probs=51.4
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-------ccc----------------------ccc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-------TNE----------------------HHR 501 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-------~~~----------------------~~~ 501 (587)
.+++++|+||++||++|+...|.|+++.++++. .++.++.|+.. ... ...
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~-~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKD-DGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCc-CCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 468999999999999999999999999999986 35666666541 100 022
Q ss_pred CCCCcCcEEEEEe-CCCcc
Q 007850 502 AKSDGFPTILFFP-AGNKS 519 (587)
Q Consensus 502 ~~i~~~Pt~~~~~-~~~~~ 519 (587)
+++..+|+++++. +|+.+
T Consensus 101 ~~v~~~P~~~vid~~G~v~ 119 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVR 119 (126)
T ss_pred hCCCcCCeEEEECCCCcEE
Confidence 6778899999995 45443
No 234
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.33 E-value=3.3e-06 Score=73.12 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=56.8
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc----------------------HHHHHHcCC
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------NELAHEYDV 165 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------~~l~~~~~i 165 (587)
.+++++|+|| ++||++|...+|.+.+++++++.. ++.++.|..+.. ..+.+.|++
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~ 98 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKG--GAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGV 98 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCC
Confidence 6889999999 789999999999999999999653 467777765432 255666776
Q ss_pred CCCc---------EEEEEe-CC-eeeEeecCCC
Q 007850 166 QGFP---------TIYFFV-DG-QHKAYNGGRT 187 (587)
Q Consensus 166 ~~~P---------t~~~~~-~g-~~~~~~g~~~ 187 (587)
...| ++++++ +| ....+.|...
T Consensus 99 ~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 99 LIEKSAGGGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred ccccccccCceeEEEEEECCCCcEEEEEecCCC
Confidence 6555 677776 56 5556666543
No 235
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.32 E-value=2.4e-06 Score=65.25 Aligned_cols=69 Identities=20% Similarity=0.377 Sum_probs=47.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHH-----cCCCCCcEEEEEeCCeeeEeecCCCH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE-----YDVQGFPTIYFFVDGQHKAYNGGRTK 188 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~-----~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (587)
++.||++||++|+..++.|.++ ++.+-.+|+++++..... +++.++|++ ++.+|... ...+.
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~---------~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l---~~~~~ 68 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL---------GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL---TNPSA 68 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe---cCCCH
Confidence 6789999999999999988654 244556787777655544 389999997 57777432 23445
Q ss_pred HHHHHHH
Q 007850 189 DAIVTWI 195 (587)
Q Consensus 189 ~~l~~~i 195 (587)
.++.+.+
T Consensus 69 ~~~~~~l 75 (77)
T TIGR02200 69 AQVKAKL 75 (77)
T ss_pred HHHHHHh
Confidence 5555544
No 236
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.32 E-value=5.7e-06 Score=72.47 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=54.2
Q ss_pred CeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC---------------------c--HHHHHHcCCC
Q 007850 111 KFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------E--NELAHEYDVQ 166 (587)
Q Consensus 111 ~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------~--~~l~~~~~i~ 166 (587)
++++|.|| ++||+.|....|.+.++++++.+. ++.++.|+.+. . ..+.+.|++.
T Consensus 29 k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~--~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~~ 106 (149)
T cd03018 29 KPVVLVFFPLAFTPVCTKELCALRDSLELFEAA--GAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGVF 106 (149)
T ss_pred CeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhC--CCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCCc
Confidence 78888887 999999999999999999999763 47777776542 2 3566777776
Q ss_pred C----C--cEEEEEe-CC-eeeEeecCC
Q 007850 167 G----F--PTIYFFV-DG-QHKAYNGGR 186 (587)
Q Consensus 167 ~----~--Pt~~~~~-~g-~~~~~~g~~ 186 (587)
. . |++++++ +| ....+.|..
T Consensus 107 ~~~~~~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 107 DEDLGVAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred cccCCCccceEEEECCCCEEEEEEecCC
Confidence 3 2 3778885 77 445666643
No 237
>PRK15000 peroxidase; Provisional
Probab=98.32 E-value=5.7e-06 Score=75.78 Aligned_cols=88 Identities=16% Similarity=0.302 Sum_probs=66.3
Q ss_pred CCCeEEEEEECC-CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc----------------------------HHH
Q 007850 109 NNKFVMVEFYAP-WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (587)
Q Consensus 109 ~~~~~~v~f~a~-wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l 159 (587)
++++++|+||+. ||+.|..+++.|.+.+++++.. ++.++.|.++.. ..+
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~--g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~i 110 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR--GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREI 110 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHH
Confidence 578999999995 9999999999999999999874 466776766521 256
Q ss_pred HHHcCCC------CCcEEEEEe-CC-eeeEeec----CCCHHHHHHHHHHh
Q 007850 160 AHEYDVQ------GFPTIYFFV-DG-QHKAYNG----GRTKDAIVTWIKKK 198 (587)
Q Consensus 160 ~~~~~i~------~~Pt~~~~~-~g-~~~~~~g----~~~~~~l~~~i~~~ 198 (587)
++.||+. ++|++++++ +| ....+.| .++.+++.+.++..
T Consensus 111 a~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 111 QKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 6678876 689999997 78 3344444 35777777777553
No 238
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=98.30 E-value=3.2e-06 Score=77.02 Aligned_cols=84 Identities=17% Similarity=0.206 Sum_probs=55.7
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC--------------------CccccccCCCCcCcEE
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG--------------------TTNEHHRAKSDGFPTI 510 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~--------------------~~~~~~~~~i~~~Pt~ 510 (587)
.+++++|+||++||++|+...|.+.++.+... .++.++..|. +......|++..+|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 57899999999999999999999999887643 2455554221 1111245788999998
Q ss_pred EEEeCCCcccCccccccc-cCHHHHHHHHHh
Q 007850 511 LFFPAGNKSFDPINVDVD-RTVVALYKFLKK 540 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~g~-~~~~~l~~~i~~ 540 (587)
+++.+.+.+ ++.|. .+.+.+.++++.
T Consensus 151 ~lID~~G~I----~~~g~~~~~~~le~ll~~ 177 (189)
T TIGR02661 151 VLLDQDGKI----RAKGLTNTREHLESLLEA 177 (189)
T ss_pred EEECCCCeE----EEccCCCCHHHHHHHHHH
Confidence 887544443 34453 344555555553
No 239
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.29 E-value=4e-06 Score=78.10 Aligned_cols=101 Identities=13% Similarity=0.054 Sum_probs=69.0
Q ss_pred EEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc------cc---c-----cc-
Q 007850 437 KIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT------NE---H-----HR- 501 (587)
Q Consensus 437 ~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~------~~---~-----~~- 501 (587)
..++++.+.-.-. .+++++|.||++||++|+...|.|.++.+++++. ++.++.|+++. .. . .+
T Consensus 85 ~d~~G~~vsLsd~-kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~-Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~ 162 (236)
T PLN02399 85 KDIDGKDVALSKF-KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQ-GFEILAFPCNQFGGQEPGSNPEIKQFACTRF 162 (236)
T ss_pred ECCCCCEEeHHHh-CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcC-CcEEEEEecccccccCCCCHHHHHHHHHHhc
Confidence 3445553332222 4689999999999999999999999999999763 56677666531 00 0 11
Q ss_pred ---C------C------------------------CCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 502 ---A------K------------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 502 ---~------~------------------------i~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
| + +...|+.+++ ++|+.+. +|.|..+.++|.+.|++.+
T Consensus 163 g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~---~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 163 KAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVE---RYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEE---EECCCCCHHHHHHHHHHHh
Confidence 1 0 1224788888 5555554 7889889999999888754
No 240
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.29 E-value=3.8e-06 Score=79.65 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=80.8
Q ss_pred CCceEEEc-CcchhHHhhcC--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-ccccCCCCcCc
Q 007850 433 DGDVKIVV-GNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-EHHRAKSDGFP 508 (587)
Q Consensus 433 ~~~~~~l~-~~~f~~~v~~~--~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~i~~~P 508 (587)
-+.+..|+ ++.|-+.|.+. +..|||.||.+.++.|..+...|..||..+.. +.|++|..... ..+.|.+..+|
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~---vKFvkI~a~~~~~~~~f~~~~LP 200 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE---VKFVKIRASKCPASENFPDKNLP 200 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT---SEEEEEEECGCCTTTTS-TTC-S
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc---eEEEEEehhccCcccCCcccCCC
Confidence 36778885 57888887443 34699999999999999999999999999986 88999887654 45789999999
Q ss_pred EEEEEeCCCcccCccccc---c-ccCHHHHHHHHHhhCCCCCc
Q 007850 509 TILFFPAGNKSFDPINVD---V-DRTVVALYKFLKKNASIPFK 547 (587)
Q Consensus 509 t~~~~~~~~~~~~~~~~~---g-~~~~~~l~~~i~~~~~~~~~ 547 (587)
|+++|++|..+.+.+.+. | ..+...|..||.+++-.+-+
T Consensus 201 tllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~l~~k 243 (265)
T PF02114_consen 201 TLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGVLPEK 243 (265)
T ss_dssp EEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTSSS--
T ss_pred EEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCCCCCc
Confidence 999999998776544443 2 55778999999998765533
No 241
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.29 E-value=7e-06 Score=75.77 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=65.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-----------CcHHHHHHcCCCCCcEEEEEe-CC
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----------EENELAHEYDVQGFPTIYFFV-DG 177 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----------~~~~l~~~~~i~~~Pt~~~~~-~g 177 (587)
++..|+.||.+.|++|+.+.|.+..+++++ ++.+..|+.+ .+..+++++||..+|+++++. ++
T Consensus 120 ~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-----g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~ 194 (215)
T PF13728_consen 120 QKYGLFFFYRSDCPYCQQQAPILQQFADKY-----GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNT 194 (215)
T ss_pred hCeEEEEEEcCCCchhHHHHHHHHHHHHHh-----CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCC
Confidence 678999999999999999999999999987 3555555554 357899999999999999997 34
Q ss_pred -ee-eEeecCCCHHHHHHHH
Q 007850 178 -QH-KAYNGGRTKDAIVTWI 195 (587)
Q Consensus 178 -~~-~~~~g~~~~~~l~~~i 195 (587)
.. ..-.|.++.++|.+-|
T Consensus 195 ~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 195 KKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred CeEEEEeeecCCHHHHHHhh
Confidence 33 4566889998887643
No 242
>PTZ00056 glutathione peroxidase; Provisional
Probab=98.26 E-value=3.6e-06 Score=77.11 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=43.1
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
+..++|+.+.-.-. .+++++|.|||+||++|+..+|.|.++.+++.+. ++.++.|++
T Consensus 24 l~d~~G~~vsL~~~-kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~-g~~vvgv~~ 80 (199)
T PTZ00056 24 VKTLEGTTVPMSSL-KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPL-GLEILAFPT 80 (199)
T ss_pred EECCCCCEEeHHHh-CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcC-ceEEEEecc
Confidence 34455554332222 4789999999999999999999999999999763 577777765
No 243
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.25 E-value=5.4e-07 Score=80.35 Aligned_cols=99 Identities=23% Similarity=0.383 Sum_probs=85.3
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--ccCCCCcCcEEEE
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HRAKSDGFPTILF 512 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~i~~~Pt~~~ 512 (587)
.++.++.+|+...+ ...++++|+||||+.|+...|.|+..+.--.+ ..+.++.+|...|.. -+|-+...|||+=
T Consensus 25 ~~~~~~eenw~~~l---~gewmi~~~ap~~psc~~~~~~~~~~a~~s~d-L~v~va~VDvt~npgLsGRF~vtaLptIYH 100 (248)
T KOG0913|consen 25 KLTRIDEENWKELL---TGEWMIEFGAPWCPSCSDLIPHLENFATVSLD-LGVKVAKVDVTTNPGLSGRFLVTALPTIYH 100 (248)
T ss_pred eeEEecccchhhhh---chHHHHHhcCCCCccccchHHHHhccCCccCC-CceeEEEEEEEeccccceeeEEEecceEEE
Confidence 67889999999976 67899999999999999999999998876444 578888888887765 4788999999999
Q ss_pred EeCCCcccCccccccccCHHHHHHHHHhh
Q 007850 513 FPAGNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 513 ~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
.+.|.-. +|.|.++..+++.|+...
T Consensus 101 vkDGeFr----rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 101 VKDGEFR----RYSGARDKNDFISFEEHR 125 (248)
T ss_pred eeccccc----cccCcccchhHHHHHHhh
Confidence 8999765 899999999999999854
No 244
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=1.7e-06 Score=75.92 Aligned_cols=87 Identities=20% Similarity=0.347 Sum_probs=69.2
Q ss_pred CceEEE-cCcchhHHhh-cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cccccCCC-----
Q 007850 434 GDVKIV-VGNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEHHRAKS----- 504 (587)
Q Consensus 434 ~~~~~l-~~~~f~~~v~-~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~i----- 504 (587)
+.++.. +++.+++.+. +....|+|.|+|.|.+.|+.+.|.+.+++..|.. +.+.|+++|+.. +...+|+|
T Consensus 124 e~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~-~~lkFGkvDiGrfpd~a~kfris~s~~ 202 (265)
T KOG0914|consen 124 ETIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNN-NLLKFGKVDIGRFPDVAAKFRISLSPG 202 (265)
T ss_pred hheeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCC-CCCcccceeeccCcChHHheeeccCcc
Confidence 456677 5666666653 3345799999999999999999999999999987 578999999875 34456654
Q ss_pred -CcCcEEEEEeCCCcccC
Q 007850 505 -DGFPTILFFPAGNKSFD 521 (587)
Q Consensus 505 -~~~Pt~~~~~~~~~~~~ 521 (587)
+..||+++|.+|+++.+
T Consensus 203 srQLPT~ilFq~gkE~~R 220 (265)
T KOG0914|consen 203 SRQLPTYILFQKGKEVSR 220 (265)
T ss_pred cccCCeEEEEccchhhhc
Confidence 48999999999998753
No 245
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.20 E-value=1.5e-05 Score=73.54 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=61.9
Q ss_pred Ce-EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC---------------------------cHHHHHH
Q 007850 111 KF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELAHE 162 (587)
Q Consensus 111 ~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~~~ 162 (587)
++ +|+.||++||+.|..+++.|.++++++++. ++.++.|.++. +..+++.
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~--gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~ 103 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKR--NVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKL 103 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHH
Confidence 54 566899999999999999999999999874 46777776653 2366778
Q ss_pred cCCC----C----CcEEEEEe-CC-eeeEeec----CCCHHHHHHHHHHh
Q 007850 163 YDVQ----G----FPTIYFFV-DG-QHKAYNG----GRTKDAIVTWIKKK 198 (587)
Q Consensus 163 ~~i~----~----~Pt~~~~~-~g-~~~~~~g----~~~~~~l~~~i~~~ 198 (587)
||+. + .|++++++ +| ....+.+ .++.+++.+.+...
T Consensus 104 yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~l 153 (203)
T cd03016 104 LGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDAL 153 (203)
T ss_pred cCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHH
Confidence 8875 2 34688886 77 3334434 45667787777654
No 246
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.19 E-value=7e-05 Score=60.17 Aligned_cols=106 Identities=30% Similarity=0.524 Sum_probs=80.2
Q ss_pred CCeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC-----CcHHHHHHcCC--
Q 007850 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDAT-----EENELAHEYDV-- 165 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~-----~~~~l~~~~~i-- 165 (587)
+..+.|+.-+|++++.+.+.++|.|=.. -|--.-+..|.+++.+......++.++.|-+. ++.+|+++|+|
T Consensus 4 ~G~v~LD~~tFdKvi~kf~~~LVKFD~a--yPyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 4 KGCVPLDELTFDKVIPKFKYVLVKFDVA--YPYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TTSEEESTTHHHHHGGGSSEEEEEEEES--S--CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred CceeeccceehhheeccCceEEEEEecc--CCCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 4578999999999999999999999543 23344567899999544444557999999765 35789999999
Q ss_pred CCCcEEEEEeCC--eeeEe--ecCCCHHHHHHHHHHhcC
Q 007850 166 QGFPTIYFFVDG--QHKAY--NGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 166 ~~~Pt~~~~~~g--~~~~~--~g~~~~~~l~~~i~~~~~ 200 (587)
..+|.+++|..| ..++| .|..+.+.|.+|+....+
T Consensus 82 e~fPv~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 82 EDFPVIYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp CC-SEEEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred ccCCEEEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 579999999855 77888 899999999999998754
No 247
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=98.18 E-value=5.2e-06 Score=72.43 Aligned_cols=80 Identities=20% Similarity=0.332 Sum_probs=55.0
Q ss_pred EcCcchhHHhhcCCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCC-CcEEEEEEeCCcc-------------------
Q 007850 439 VVGNNFDEIVLDESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGV-DSIVIAKMDGTTN------------------- 497 (587)
Q Consensus 439 l~~~~f~~~v~~~~~~v~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~~------------------- 497 (587)
.+++.+.-.- -.+++++|.||++ ||++|+...|.+.++.+.++.. ..+..+..+.+..
T Consensus 16 ~~g~~~~l~~-~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~ 94 (146)
T PF08534_consen 16 LDGKPVSLSD-FKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPD 94 (146)
T ss_dssp TTSEEEEGGG-GTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETT
T ss_pred CCCCEecHHH-hCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechH
Confidence 5555554432 3588999999999 9999999999999999887763 2344444333321
Q ss_pred --ccccCCCC---------cCcEEEEEeCCCcc
Q 007850 498 --EHHRAKSD---------GFPTILFFPAGNKS 519 (587)
Q Consensus 498 --~~~~~~i~---------~~Pt~~~~~~~~~~ 519 (587)
....+++. .+|+++++.+.+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V 127 (146)
T PF08534_consen 95 GALAKALGVTIMEDPGNGFGIPTTFLIDKDGKV 127 (146)
T ss_dssp SHHHHHTTCEEECCTTTTSSSSEEEEEETTSBE
T ss_pred HHHHHHhCCccccccccCCeecEEEEEECCCEE
Confidence 11346777 99998888655554
No 248
>PRK13189 peroxiredoxin; Provisional
Probab=98.16 E-value=1.9e-05 Score=73.60 Aligned_cols=88 Identities=16% Similarity=0.263 Sum_probs=63.3
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC---------------------------cHHHH
Q 007850 109 NNKF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE---------------------------ENELA 160 (587)
Q Consensus 109 ~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~---------------------------~~~l~ 160 (587)
.+++ +|+.||++||+.|..+++.|.++++++++. ++.++.|.++. +..++
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~--~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia 111 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL--NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIA 111 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc--CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHH
Confidence 4664 456889999999999999999999999874 46666665542 23567
Q ss_pred HHcCCC-------CCcEEEEEe-CCee-eEee----cCCCHHHHHHHHHHh
Q 007850 161 HEYDVQ-------GFPTIYFFV-DGQH-KAYN----GGRTKDAIVTWIKKK 198 (587)
Q Consensus 161 ~~~~i~-------~~Pt~~~~~-~g~~-~~~~----g~~~~~~l~~~i~~~ 198 (587)
+.||+. .+|++++++ +|.+ ..+. +.++.+++.+.|...
T Consensus 112 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 112 KKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred HHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 778865 468999997 7732 2322 456778888777654
No 249
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=98.15 E-value=8e-06 Score=72.66 Aligned_cols=84 Identities=7% Similarity=0.024 Sum_probs=55.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHH-hcC--CCcEEEEEEeCC-----------------------------ccc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKH-LRG--VDSIVIAKMDGT-----------------------------TNE 498 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~-~~~--~~~~~~~~id~~-----------------------------~~~ 498 (587)
.++.++|.|||+||++|+..+|.+..++.+ +.- ......++.|.. ...
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 389999999999999999999999999753 221 001133333321 111
Q ss_pred cccCCCCcCcEE-EEE-eCCCcccCccccccccCHHHHHHH
Q 007850 499 HHRAKSDGFPTI-LFF-PAGNKSFDPINVDVDRTVVALYKF 537 (587)
Q Consensus 499 ~~~~~i~~~Pt~-~~~-~~~~~~~~~~~~~g~~~~~~l~~~ 537 (587)
...|++.++|+. +++ ++|+.+. ++.|..+.+++.++
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkVv~---~~~G~l~~ee~e~~ 175 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKVKF---VKEGALSDSDIQTV 175 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcEEE---EEeCCCCHHHHHHH
Confidence 235788899876 566 4555543 78898887776553
No 250
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=98.14 E-value=1.3e-05 Score=76.12 Aligned_cols=101 Identities=18% Similarity=0.370 Sum_probs=73.6
Q ss_pred CCeEEcC-hhhHHHHHhC---CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCC
Q 007850 93 KDVVVLK-ERNFSDVIEN---NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGF 168 (587)
Q Consensus 93 ~~v~~l~-~~~~~~~~~~---~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~ 168 (587)
+.|.+++ +..|-+.+.+ +..|||.||.+.++.|..+...|..||.+|.. +.|+.|....-+ ++..|.+..+
T Consensus 125 G~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~----vKFvkI~a~~~~-~~~~f~~~~L 199 (265)
T PF02114_consen 125 GEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE----VKFVKIRASKCP-ASENFPDKNL 199 (265)
T ss_dssp -SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT----SEEEEEEECGCC-TTTTS-TTC-
T ss_pred ceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc----eEEEEEehhccC-cccCCcccCC
Confidence 5688885 5778887743 45799999999999999999999999999977 999999876654 6788999999
Q ss_pred cEEEEEeCC-eeeEeec-------CCCHHHHHHHHHHh
Q 007850 169 PTIYFFVDG-QHKAYNG-------GRTKDAIVTWIKKK 198 (587)
Q Consensus 169 Pt~~~~~~g-~~~~~~g-------~~~~~~l~~~i~~~ 198 (587)
||+++|++| ....+.| ..+...|..|+.++
T Consensus 200 PtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 200 PTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred CEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 999999999 4555544 23445666666654
No 251
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.11 E-value=3.1e-05 Score=73.18 Aligned_cols=88 Identities=13% Similarity=0.242 Sum_probs=64.1
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC----------------------------cHHH
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------------------------ENEL 159 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l 159 (587)
+++++++.|| ++||++|..+++.|.++++++.+.+ +.++.|.++. +..+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~g--v~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~i 174 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERG--VKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREV 174 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCC--CEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHH
Confidence 4567777777 8999999999999999999998744 5555565543 2367
Q ss_pred HHHcCCC-----CCcEEEEEe-CC-eeeEe----ecCCCHHHHHHHHHHh
Q 007850 160 AHEYDVQ-----GFPTIYFFV-DG-QHKAY----NGGRTKDAIVTWIKKK 198 (587)
Q Consensus 160 ~~~~~i~-----~~Pt~~~~~-~g-~~~~~----~g~~~~~~l~~~i~~~ 198 (587)
++.||+. ..|++++++ +| ....+ ...++.+++.+.|...
T Consensus 175 akayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 175 SKSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred HHHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 7888885 589999997 88 33322 2456778888777644
No 252
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.11 E-value=3.8e-05 Score=58.29 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=53.8
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeec-CCCHHHHHHH
Q 007850 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNG-GRTKDAIVTW 194 (587)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g-~~~~~~l~~~ 194 (587)
.+++++|+.|......+.+++..+ ++.+-.+|..+.+++ .+|||.++|+++ -||. ..+.| ..+.+.|.+|
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~-----~i~~ei~~~~~~~~~-~~ygv~~vPalv--Ing~-~~~~G~~p~~~el~~~ 74 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEEL-----GIEVEIIDIEDFEEI-EKYGVMSVPALV--INGK-VVFVGRVPSKEELKEL 74 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHT-----TEEEEEEETTTHHHH-HHTT-SSSSEEE--ETTE-EEEESS--HHHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhc-----CCeEEEEEccCHHHH-HHcCCCCCCEEE--ECCE-EEEEecCCCHHHHHHH
Confidence 346888999999999999988876 255566677666666 999999999993 3664 45788 7777999888
Q ss_pred HH
Q 007850 195 IK 196 (587)
Q Consensus 195 i~ 196 (587)
|+
T Consensus 75 l~ 76 (76)
T PF13192_consen 75 LE 76 (76)
T ss_dssp HH
T ss_pred hC
Confidence 74
No 253
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.11 E-value=7.5e-06 Score=71.88 Aligned_cols=42 Identities=17% Similarity=0.221 Sum_probs=36.0
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
.+++|+|+||++||+ |+...|.|+++.+++++ .++.++.+++
T Consensus 21 ~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~-~~~~vv~v~~ 62 (152)
T cd00340 21 KGKVLLIVNVASKCG-FTPQYEGLEALYEKYKD-RGLVVLGFPC 62 (152)
T ss_pred CCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcC-CCEEEEEecc
Confidence 378999999999999 99999999999999975 3577777754
No 254
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.10 E-value=3.4e-05 Score=66.64 Aligned_cols=79 Identities=23% Similarity=0.499 Sum_probs=55.8
Q ss_pred cChhhHHHHHhCCCeEEEEEECCCChhhhhhhH-HH--HHHHHHhhhcCCcEEEEEEeCCCcHHHHHHc--------CCC
Q 007850 98 LKERNFSDVIENNKFVMVEFYAPWCGHCQALAP-EY--AAAATELKSANESVVLAKVDATEENELAHEY--------DVQ 166 (587)
Q Consensus 98 l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p-~~--~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~i~ 166 (587)
.+++-++..-+++|+++|.++++||..|+.+.. .| .++++.++. ++.-+.||.++.+++...| |..
T Consensus 25 w~~ea~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDree~Pdid~~y~~~~~~~~~~g 101 (163)
T PF03190_consen 25 WGEEALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDREERPDIDKIYMNAVQAMSGSG 101 (163)
T ss_dssp SSHHHHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEETTT-HHHHHHHHHHHHHHHS--
T ss_pred CCHHHHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEeccccCccHHHHHHHHHHHhcCCC
Confidence 346778888889999999999999999998875 33 456777776 6888999999999988877 788
Q ss_pred CCcEEEEEe-CCee
Q 007850 167 GFPTIYFFV-DGQH 179 (587)
Q Consensus 167 ~~Pt~~~~~-~g~~ 179 (587)
|+|+.+|.. +|..
T Consensus 102 GwPl~vfltPdg~p 115 (163)
T PF03190_consen 102 GWPLTVFLTPDGKP 115 (163)
T ss_dssp -SSEEEEE-TTS-E
T ss_pred CCCceEEECCCCCe
Confidence 999999996 7743
No 255
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.09 E-value=3.2e-05 Score=71.57 Aligned_cols=88 Identities=18% Similarity=0.308 Sum_probs=64.2
Q ss_pred CCCe-EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---------------------------HHHH
Q 007850 109 NNKF-VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------------NELA 160 (587)
Q Consensus 109 ~~~~-~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~l~ 160 (587)
.|++ +|+.||++||+.|..+++.|.++++++... ++.++.|.++.. ..++
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~--gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va 104 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL--NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVS 104 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHH
Confidence 4555 478999999999999999999999999874 467777766531 2567
Q ss_pred HHcCCC-------CCcEEEEEe-CCe-eeE--ee--cCCCHHHHHHHHHHh
Q 007850 161 HEYDVQ-------GFPTIYFFV-DGQ-HKA--YN--GGRTKDAIVTWIKKK 198 (587)
Q Consensus 161 ~~~~i~-------~~Pt~~~~~-~g~-~~~--~~--g~~~~~~l~~~i~~~ 198 (587)
+.||+. ..|++++++ +|+ ... |. ..++.+++.+.+...
T Consensus 105 ~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 105 NQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred HHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 778873 579999997 772 222 22 235678888877654
No 256
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.09 E-value=1.6e-05 Score=66.89 Aligned_cols=75 Identities=25% Similarity=0.484 Sum_probs=48.8
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHc---CCCCCcEEEEEe-CCeeeEeecC
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEY---DVQGFPTIYFFV-DGQHKAYNGG 185 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~-~g~~~~~~g~ 185 (587)
.+..++.|..+|||.|.+..|.+.++++.... +.+--+-.++++++..+| |..++|++++++ +|.....-|+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~----i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~lg~wge 116 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANPN----IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKELGRWGE 116 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT----EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EEEEEES
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCCC----CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEeEEEcC
Confidence 45678889999999999999999999987533 555555555777776655 688999999996 5566656666
Q ss_pred CCH
Q 007850 186 RTK 188 (587)
Q Consensus 186 ~~~ 188 (587)
+..
T Consensus 117 rP~ 119 (129)
T PF14595_consen 117 RPK 119 (129)
T ss_dssp S-H
T ss_pred CCH
Confidence 653
No 257
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=98.08 E-value=1.9e-05 Score=70.96 Aligned_cols=88 Identities=16% Similarity=0.200 Sum_probs=63.2
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc------c-------------------------c
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------E-------------------------H 499 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------~-------------------------~ 499 (587)
.++++||+||++||+.|....+.+.++..+++. .++.++.|..+.. . .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~-~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~ 102 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGA-KGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVA 102 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhh-CCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHH
Confidence 578999999999999999999999999999975 3566666665431 0 0
Q ss_pred ccCCCCcCcEEEEEeCCCcccCccccc-----------cccCHHHHHHHHHhhCC
Q 007850 500 HRAKSDGFPTILFFPAGNKSFDPINVD-----------VDRTVVALYKFLKKNAS 543 (587)
Q Consensus 500 ~~~~i~~~Pt~~~~~~~~~~~~~~~~~-----------g~~~~~~l~~~i~~~~~ 543 (587)
..+++...|+++++..++++ .|. +..+..++.+-|+..+.
T Consensus 103 ~~~~v~~~P~~~lid~~G~v----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 153 (171)
T cd02969 103 KAYGAACTPDFFLFDPDGKL----VYRGRIDDSRPGNDPPVTGRDLRAALDALLA 153 (171)
T ss_pred HHcCCCcCCcEEEECCCCeE----EEeecccCCcccccccccHHHHHHHHHHHHc
Confidence 23678899999999644443 222 23456777777776554
No 258
>PLN02412 probable glutathione peroxidase
Probab=98.08 E-value=1.1e-05 Score=71.88 Aligned_cols=102 Identities=17% Similarity=0.089 Sum_probs=67.8
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc-------c--cc-----cc
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT-------N--EH-----HR 501 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~--~~-----~~ 501 (587)
+..++++.+.-.-. .++.++|+||++||+.|+...|.|.++.+++++. ++.++.|+++. . .. .+
T Consensus 14 l~d~~G~~v~l~~~-~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~-g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~ 91 (167)
T PLN02412 14 VKDIGGNDVSLNQY-KGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQ-GFEILAFPCNQFLGQEPGSNEEIQQTVCTR 91 (167)
T ss_pred EECCCCCEEeHHHh-CCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhC-CcEEEEecccccccCCCCCHHHHHHHHHHc
Confidence 33445554332112 4689999999999999999999999999999863 57777776421 1 00 11
Q ss_pred ----CC------------------------------CCcCcEEEEE-eCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 502 ----AK------------------------------SDGFPTILFF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 502 ----~~------------------------------i~~~Pt~~~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
|. +...|+.+++ ++|+.+. ++.|..+.++|.+.|+..+
T Consensus 92 ~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~---~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 92 FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQ---RYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEE---EECCCCCHHHHHHHHHHHH
Confidence 10 2334777777 5555543 7778888888888887653
No 259
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.08 E-value=3.2e-05 Score=71.66 Aligned_cols=88 Identities=14% Similarity=0.219 Sum_probs=63.2
Q ss_pred CCCeEE-EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---------------------------HHHH
Q 007850 109 NNKFVM-VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---------------------------NELA 160 (587)
Q Consensus 109 ~~~~~~-v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---------------------------~~l~ 160 (587)
.|++++ +.||++||+.|..+++.|.+++.++... ++.++.|.++.. ..++
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~--g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia 109 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL--NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVA 109 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC--CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHH
Confidence 456555 5899999999999999999999999874 466766666532 2566
Q ss_pred HHcCCC-------CCcEEEEEe-CCe-eeEee----cCCCHHHHHHHHHHh
Q 007850 161 HEYDVQ-------GFPTIYFFV-DGQ-HKAYN----GGRTKDAIVTWIKKK 198 (587)
Q Consensus 161 ~~~~i~-------~~Pt~~~~~-~g~-~~~~~----g~~~~~~l~~~i~~~ 198 (587)
+.||+. ..|++++++ +|. ...+. ..++.+++.+.++..
T Consensus 110 ~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 110 KRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred HHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 677763 368999996 773 23222 346778888888654
No 260
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.06 E-value=1.5e-05 Score=65.28 Aligned_cols=73 Identities=23% Similarity=0.460 Sum_probs=46.8
Q ss_pred chhHHhh---cCCCcEEEEEeCC-------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--------cc---cc
Q 007850 443 NFDEIVL---DESKDVLLEIYAP-------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--------EH---HR 501 (587)
Q Consensus 443 ~f~~~v~---~~~~~v~v~f~~~-------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--------~~---~~ 501 (587)
+|.+.+. +++++++|+|+++ ||+.|++..|.+++.....+. +..++.+.+... .. +.
T Consensus 7 ~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~--~~~lv~v~VG~r~~Wkdp~n~fR~~p~ 84 (119)
T PF06110_consen 7 EFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE--NARLVYVEVGDRPEWKDPNNPFRTDPD 84 (119)
T ss_dssp HHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST--TEEEEEEE---HHHHC-TTSHHHH--C
T ss_pred HHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC--CceEEEEEcCCHHHhCCCCCCceEcce
Confidence 4555552 3557899999865 999999999999998888655 455665555321 11 35
Q ss_pred CCCCcCcEEEEEeCCC
Q 007850 502 AKSDGFPTILFFPAGN 517 (587)
Q Consensus 502 ~~i~~~Pt~~~~~~~~ 517 (587)
+++.++||++-|..++
T Consensus 85 ~~l~~IPTLi~~~~~~ 100 (119)
T PF06110_consen 85 LKLKGIPTLIRWETGE 100 (119)
T ss_dssp C---SSSEEEECTSS-
T ss_pred eeeeecceEEEECCCC
Confidence 8999999999997763
No 261
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.04 E-value=7.8e-05 Score=61.48 Aligned_cols=91 Identities=8% Similarity=0.166 Sum_probs=69.8
Q ss_pred HHHhCCCeEEEEEECC----CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc--HHHHHHcCCCCCcEEEEEe--C
Q 007850 105 DVIENNKFVMVEFYAP----WCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV--D 176 (587)
Q Consensus 105 ~~~~~~~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~--~ 176 (587)
..-+++|+++|++|++ ||..|+..... .++.+-++. ++.+.+.|+... ..++..++++++|++.++. +
T Consensus 12 ~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~---~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~ 87 (116)
T cd02991 12 DAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT---RMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKD 87 (116)
T ss_pred HHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc---CEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecC
Confidence 3346789999999999 99999765421 233444444 688888888654 5789999999999999993 3
Q ss_pred C---eeeEeecCCCHHHHHHHHHHhc
Q 007850 177 G---QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 177 g---~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
+ ...+..|..+.+++...++..+
T Consensus 88 ~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 88 NRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred CceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 3 4568999999999999888765
No 262
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.01 E-value=1.1e-05 Score=62.69 Aligned_cols=58 Identities=21% Similarity=0.404 Sum_probs=43.9
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-----HHHHHcCCCCCcEEEEEeCCe
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEYDVQGFPTIYFFVDGQ 178 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~ 178 (587)
++.|+++||++|+...+.|.++. ... .+.++.||.+.+. .+.+.+++.++|++ |.+|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~---~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v--~i~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP---AYEVVELDQLSNGSEIQDYLEEITGQRTVPNI--FINGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC---CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 47899999999999999999875 222 3778888876543 25666799999997 44564
No 263
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.01 E-value=6.3e-05 Score=70.61 Aligned_cols=85 Identities=19% Similarity=0.255 Sum_probs=67.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-----------HHHHHHcCCCCCcEEEEEe-C-
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAHEYDVQGFPTIYFFV-D- 176 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~~~~i~~~Pt~~~~~-~- 176 (587)
++..|+.||.+-|++|+++.|.+..+++++ ++.+..|+++.. ..+++++||..+|+++++. +
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~y-----gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t 224 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEY-----GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKS 224 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCC
Confidence 568999999999999999999999999987 455555655533 5688999999999999997 3
Q ss_pred Cee-eEeecCCCHHHHHHHHHHhc
Q 007850 177 GQH-KAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 177 g~~-~~~~g~~~~~~l~~~i~~~~ 199 (587)
+.. ..-.|.++.++|.+-|....
T Consensus 225 ~~~~pv~~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 225 QKMSPLAYGFISQDELKERILNVL 248 (256)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 233 34568999999987766544
No 264
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.99 E-value=4e-05 Score=67.33 Aligned_cols=43 Identities=16% Similarity=0.144 Sum_probs=37.2
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
.+++++|.||++||++|+..+|.+.++.+.++.. ++.++.|++
T Consensus 21 ~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~-~~~v~~i~~ 63 (153)
T TIGR02540 21 RGKVSLVVNVASECGFTDQNYRALQELHRELGPS-HFNVLAFPC 63 (153)
T ss_pred CCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhC-CeEEEEEec
Confidence 4688999999999999999999999999999763 577777764
No 265
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.98 E-value=2e-05 Score=65.63 Aligned_cols=66 Identities=27% Similarity=0.602 Sum_probs=54.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC---ccccccCC--CCcCcEEEEEeCCCcc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT---TNEHHRAK--SDGFPTILFFPAGNKS 519 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~---~~~~~~~~--i~~~Pt~~~~~~~~~~ 519 (587)
++++++.||++||++|+.+.|.+.++++.+.. .+.+..+|.. ......+. +..+|+++++.++...
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 102 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG--DVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKEV 102 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcC--CcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcchh
Confidence 77899999999999999999999999999876 5677777775 23345677 8899999988877664
No 266
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.97 E-value=1.7e-05 Score=60.17 Aligned_cols=72 Identities=15% Similarity=0.253 Sum_probs=52.6
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCcccccc-ccCHHHHHH
Q 007850 458 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDV-DRTVVALYK 536 (587)
Q Consensus 458 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g-~~~~~~l~~ 536 (587)
.+++++|++|..+...+++++..+. ..+.+..+ .+.....+|++.++|++++ +|+. ++.| ..+.++|.+
T Consensus 4 ~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~-~~~~~~~~ygv~~vPalvI--ng~~-----~~~G~~p~~~el~~ 73 (76)
T PF13192_consen 4 KVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDI-EDFEEIEKYGVMSVPALVI--NGKV-----VFVGRVPSKEELKE 73 (76)
T ss_dssp EEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEET-TTHHHHHHTT-SSSSEEEE--TTEE-----EEESS--HHHHHHH
T ss_pred EEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEc-cCHHHHHHcCCCCCCEEEE--CCEE-----EEEecCCCHHHHHH
Confidence 3468889999999999999998873 34555554 3334457899999999966 5543 6889 888999999
Q ss_pred HHH
Q 007850 537 FLK 539 (587)
Q Consensus 537 ~i~ 539 (587)
||+
T Consensus 74 ~l~ 76 (76)
T PF13192_consen 74 LLE 76 (76)
T ss_dssp HHH
T ss_pred HhC
Confidence 885
No 267
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=4.2e-05 Score=68.33 Aligned_cols=80 Identities=20% Similarity=0.347 Sum_probs=68.4
Q ss_pred HHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC-eeeEeec
Q 007850 106 VIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG-QHKAYNG 184 (587)
Q Consensus 106 ~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~g 184 (587)
....++..+++||++||.+|.++...+..+++..+ ++.++.++.+..++++..+.+...|.+.++..| ...+..|
T Consensus 13 ~~~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~----~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~~l~~ 88 (227)
T KOG0911|consen 13 LDQKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK----NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVDRLSG 88 (227)
T ss_pred HHhccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh----hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhhhhhc
Confidence 33467889999999999999999999999998883 599999999999999999999999999999888 5555556
Q ss_pred CCCHH
Q 007850 185 GRTKD 189 (587)
Q Consensus 185 ~~~~~ 189 (587)
.....
T Consensus 89 ~~~~~ 93 (227)
T KOG0911|consen 89 ADPPF 93 (227)
T ss_pred cCcHH
Confidence 54443
No 268
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.95 E-value=1.3e-05 Score=61.25 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=43.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--ccc-----CCCCcCcEEEEEeCCCcccCccccccc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHR-----AKSDGFPTILFFPAGNKSFDPINVDVD 528 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~-----~~i~~~Pt~~~~~~~~~~~~~~~~~g~ 528 (587)
++.||++||++|+++++.|.++.. .+. .+|.+.+. ... +++.++|++ ++.+|..+ ..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~~------~~~--~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~~l-------~~ 65 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLGA------AYE--WVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGSFL-------TN 65 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcCC------ceE--EEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCeEe-------cC
Confidence 678999999999999999876532 233 34544332 222 378899997 46676543 23
Q ss_pred cCHHHHHHHHH
Q 007850 529 RTVVALYKFLK 539 (587)
Q Consensus 529 ~~~~~l~~~i~ 539 (587)
.+..++.+.|+
T Consensus 66 ~~~~~~~~~l~ 76 (77)
T TIGR02200 66 PSAAQVKAKLQ 76 (77)
T ss_pred CCHHHHHHHhh
Confidence 44556665554
No 269
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.95 E-value=2.4e-05 Score=67.80 Aligned_cols=86 Identities=20% Similarity=0.352 Sum_probs=74.8
Q ss_pred eEEcC-hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 95 VVVLK-ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 95 v~~l~-~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
..++. ...|-+...+...|++.||-+.-..|+-+-..|+.+|..+-+ ..|+.||+...|-++.+++|.-+|++.+
T Consensus 68 y~ev~~Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e----TrFikvnae~~PFlv~kL~IkVLP~v~l 143 (211)
T KOG1672|consen 68 YEEVASEKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE----TRFIKVNAEKAPFLVTKLNIKVLPTVAL 143 (211)
T ss_pred EEEeccHHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc----ceEEEEecccCceeeeeeeeeEeeeEEE
Confidence 44444 677777777888999999999999999999999999998866 8999999999999999999999999999
Q ss_pred EeCCee-eEeec
Q 007850 174 FVDGQH-KAYNG 184 (587)
Q Consensus 174 ~~~g~~-~~~~g 184 (587)
|.+|.. ..+.|
T Consensus 144 ~k~g~~~D~iVG 155 (211)
T KOG1672|consen 144 FKNGKTVDYVVG 155 (211)
T ss_pred EEcCEEEEEEee
Confidence 999944 44444
No 270
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=97.94 E-value=5.1e-05 Score=62.11 Aligned_cols=74 Identities=20% Similarity=0.466 Sum_probs=49.6
Q ss_pred hhHHHHH----hCCCeEEEEEECC-------CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-------HHHH-
Q 007850 101 RNFSDVI----ENNKFVMVEFYAP-------WCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------ELAH- 161 (587)
Q Consensus 101 ~~~~~~~----~~~~~~~v~f~a~-------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~- 161 (587)
++|.+.+ ..+++++|.|+++ |||.|+...|.+.++.....+ +..++.|.....+ .+..
T Consensus 6 ~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~---~~~lv~v~VG~r~~Wkdp~n~fR~~ 82 (119)
T PF06110_consen 6 DEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE---NARLVYVEVGDRPEWKDPNNPFRTD 82 (119)
T ss_dssp HHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST---TEEEEEEE---HHHHC-TTSHHHH-
T ss_pred HHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC---CceEEEEEcCCHHHhCCCCCCceEc
Confidence 3455555 3568999999865 999999999999998887554 6788877764332 2333
Q ss_pred -HcCCCCCcEEEEEeCC
Q 007850 162 -EYDVQGFPTIYFFVDG 177 (587)
Q Consensus 162 -~~~i~~~Pt~~~~~~g 177 (587)
++++.++||++-+..+
T Consensus 83 p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 83 PDLKLKGIPTLIRWETG 99 (119)
T ss_dssp -CC---SSSEEEECTSS
T ss_pred ceeeeeecceEEEECCC
Confidence 4899999999999766
No 271
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.93 E-value=2.2e-05 Score=59.19 Aligned_cols=67 Identities=16% Similarity=0.272 Sum_probs=48.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCcEEEEEeCCCcccCcccccccc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKSFDPINVDVDR 529 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~ 529 (587)
+.+|+++||++|+.+++.|.+. ++.+..+|.+.+.. ..+++.++|++++. |+ .+.| .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~--------~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~~------~~~g-~ 64 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK--------GIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--HK------IIVG-F 64 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC--------CCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--CE------EEee-C
Confidence 5789999999999999888752 35566666655432 34789999999874 32 2445 4
Q ss_pred CHHHHHHHHH
Q 007850 530 TVVALYKFLK 539 (587)
Q Consensus 530 ~~~~l~~~i~ 539 (587)
+.+.|.++|+
T Consensus 65 ~~~~i~~~i~ 74 (74)
T TIGR02196 65 DPEKLDQLLE 74 (74)
T ss_pred CHHHHHHHhC
Confidence 6788888863
No 272
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.91 E-value=3.7e-05 Score=71.04 Aligned_cols=85 Identities=19% Similarity=0.260 Sum_probs=63.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC-----------ccccccCCCCcCcEEEEEeCCCcc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT-----------TNEHHRAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~-----------~~~~~~~~i~~~Pt~~~~~~~~~~ 519 (587)
.++.-|++||.+.|+.|+.+.|++..+++++.- .+..+.+|.. ......++|..+|++++...+...
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg~--~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~ 196 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYGF--SVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKK 196 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhCC--EEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCe
Confidence 366789999999999999999999999999853 5666666632 223457899999999998655532
Q ss_pred cCccccccccCHHHHHHHH
Q 007850 520 FDPINVDVDRTVVALYKFL 538 (587)
Q Consensus 520 ~~~~~~~g~~~~~~l~~~i 538 (587)
..+ .-.|..+.++|.+-|
T Consensus 197 ~~p-v~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 197 WYP-VSQGFMSLDELEDRI 214 (215)
T ss_pred EEE-EeeecCCHHHHHHhh
Confidence 133 344889999887643
No 273
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.90 E-value=1.4e-05 Score=67.72 Aligned_cols=69 Identities=23% Similarity=0.491 Sum_probs=53.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCC---CcEEEEEEeCCcccc-------------------------ccC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGV---DSIVIAKMDGTTNEH-------------------------HRA 502 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~---~~~~~~~id~~~~~~-------------------------~~~ 502 (587)
.++.|.++|.|.||++||.+-|.+.++.+.+... --|.|+.-|-+.... ..|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4699999999999999999999999999988775 346666666554221 247
Q ss_pred CCCcCcEEEEE-eCCCcc
Q 007850 503 KSDGFPTILFF-PAGNKS 519 (587)
Q Consensus 503 ~i~~~Pt~~~~-~~~~~~ 519 (587)
.|.++|++++. ++|..+
T Consensus 112 ~v~~iP~l~i~~~dG~~v 129 (157)
T KOG2501|consen 112 EVKGIPALVILKPDGTVV 129 (157)
T ss_pred ccCcCceeEEecCCCCEe
Confidence 89999998887 556554
No 274
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.89 E-value=6.4e-05 Score=68.12 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=40.2
Q ss_pred eEEEcCcchhHHhhcCCCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 436 VKIVVGNNFDEIVLDESKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
+..++++.+.-.-. .++++ ++.+||+||++|+..+|.|+++.+++++. ++.++.|++
T Consensus 25 l~d~~G~~vsLs~~-~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~-gv~vv~vs~ 82 (183)
T PTZ00256 25 AIDIDGQLVQLSKF-KGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQ-GLEILAFPC 82 (183)
T ss_pred eEcCCCCEEeHHHh-CCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhC-CcEEEEEec
Confidence 34455554443222 35654 56679999999999999999999999763 577777764
No 275
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=97.89 E-value=0.00013 Score=67.04 Aligned_cols=88 Identities=14% Similarity=0.338 Sum_probs=62.8
Q ss_pred CCCeEEEEEEC-CCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc----------------------------HHH
Q 007850 109 NNKFVMVEFYA-PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----------------------------NEL 159 (587)
Q Consensus 109 ~~~~~~v~f~a-~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----------------------------~~l 159 (587)
.|++++|+||+ .||+.|..+++.|.++++++... ++.++.|+++.. ..+
T Consensus 35 ~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~--g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~i 112 (199)
T PTZ00253 35 KGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL--NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSI 112 (199)
T ss_pred CCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHH
Confidence 57899999995 78999999999999999999874 477777766522 256
Q ss_pred HHHcCCC------CCcEEEEEe-CCe-eeEeec----CCCHHHHHHHHHHh
Q 007850 160 AHEYDVQ------GFPTIYFFV-DGQ-HKAYNG----GRTKDAIVTWIKKK 198 (587)
Q Consensus 160 ~~~~~i~------~~Pt~~~~~-~g~-~~~~~g----~~~~~~l~~~i~~~ 198 (587)
++.||+. .+|++++++ +|. ...+.+ .++.+++.+.|...
T Consensus 113 a~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 113 ARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 7778875 478999997 773 333333 34555666555443
No 276
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.85 E-value=4.5e-05 Score=55.56 Aligned_cols=58 Identities=33% Similarity=0.695 Sum_probs=46.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----ccCCCCcCcEEEEEeCC
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAG 516 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~Pt~~~~~~~ 516 (587)
++.||++||++|+.+.+.+.++ .... .++.++.++++.... ..+.+..+|+++++..|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLN--KGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhC--CCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 4789999999999999999998 3222 357777787766553 26788999999999877
No 277
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.83 E-value=7e-05 Score=59.44 Aligned_cols=73 Identities=22% Similarity=0.445 Sum_probs=55.9
Q ss_pred hhHHHHH---hCCCeEEEEEEC--------CCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-------HHHHH
Q 007850 101 RNFSDVI---ENNKFVMVEFYA--------PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-------ELAHE 162 (587)
Q Consensus 101 ~~~~~~~---~~~~~~~v~f~a--------~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-------~l~~~ 162 (587)
+.|++.+ .+++.++|+|++ +|||.|.+..|.+.++.+.... ++.|+.|+..+-+ .+...
T Consensus 13 e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~---~~~~v~v~VG~rp~Wk~p~n~FR~d 89 (128)
T KOG3425|consen 13 ESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE---DVHFVHVYVGNRPYWKDPANPFRKD 89 (128)
T ss_pred HHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC---ceEEEEEEecCCCcccCCCCccccC
Confidence 4566555 356779999986 5999999999999998885544 7999999886532 45556
Q ss_pred cCC-CCCcEEEEEeC
Q 007850 163 YDV-QGFPTIYFFVD 176 (587)
Q Consensus 163 ~~i-~~~Pt~~~~~~ 176 (587)
.++ .++||++=+.+
T Consensus 90 ~~~lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 90 PGILTAVPTLLRWKR 104 (128)
T ss_pred CCceeecceeeEEcC
Confidence 666 89999987764
No 278
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.77 E-value=0.00074 Score=72.11 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=115.4
Q ss_pred cEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCCCCH
Q 007850 326 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 404 (587)
Q Consensus 326 ~~il~~~~~-~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~ 404 (587)
..+.+|.+. ..|.+..+.++++|.-- +++.+...+. . ...|.+.+...+......|.|-..-
T Consensus 21 v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~~---------------~-~~~p~~~~~~~~~~~~i~f~g~P~g 83 (517)
T PRK15317 21 IELVASLDDSEKSAELKELLEEIASLS-DKITVEEDSL---------------D-VRKPSFSITRPGEDTGVRFAGIPMG 83 (517)
T ss_pred EEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEccC---------------C-CCCCEEEEEcCCccceEEEEecCcc
Confidence 445566654 45777777788887643 5666543221 0 1258877765443344566677777
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007850 405 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483 (587)
Q Consensus 405 e~i~~fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~-v~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 483 (587)
..+..||..+++=.- .-..|+.+..+ .+..-+++ -+..|++++|++|......+++++...+
T Consensus 84 ~Ef~s~i~~i~~~~~---------------~~~~l~~~~~~-~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~- 146 (517)
T PRK15317 84 HEFTSLVLALLQVGG---------------HPPKLDQEVIE-QIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNP- 146 (517)
T ss_pred HHHHHHHHHHHHhcC---------------CCCCCCHHHHH-HHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC-
Confidence 888899988866211 11233333333 34343445 4888999999999999999999988644
Q ss_pred CCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 484 VDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 484 ~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
.+..-.+|..... ..+|++.++|++++ +++. .+.|..+.+++.+.+.+..
T Consensus 147 --~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~~~~~~ 198 (517)
T PRK15317 147 --NITHTMIDGALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKLDTGA 198 (517)
T ss_pred --CceEEEEEchhCHhHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhccc
Confidence 4666677776543 57899999999876 5544 5779889999988887643
No 279
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.76 E-value=0.0002 Score=66.87 Aligned_cols=85 Identities=14% Similarity=0.106 Sum_probs=65.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-----------cHHHHHHcCCCCCcEEEEEeCC-
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-----------ENELAHEYDVQGFPTIYFFVDG- 177 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-----------~~~l~~~~~i~~~Pt~~~~~~g- 177 (587)
++..|+.||.+-|++|+++.|.+..+++++ ++.+..|.++. +...+.++||..+|+++++..+
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-----g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t 217 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTY-----GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKS 217 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHh-----CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCC
Confidence 468899999999999999999999999987 34554454432 2346789999999999999633
Q ss_pred -ee-eEeecCCCHHHHHHHHHHhc
Q 007850 178 -QH-KAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 178 -~~-~~~~g~~~~~~l~~~i~~~~ 199 (587)
.. -.-.|.++.++|.+-|....
T Consensus 218 ~~~~pv~~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 218 GSVRPLSYGFITQDDLAKRFLNVS 241 (248)
T ss_pred CcEEEEeeccCCHHHHHHHHHHHH
Confidence 33 35568899999987766543
No 280
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=97.73 E-value=0.00078 Score=54.28 Aligned_cols=106 Identities=23% Similarity=0.356 Sum_probs=76.0
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHH-HHhcCCCcEEEEEEeCCccc-------cccCCC--
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLA-KHLRGVDSIVIAKMDGTTNE-------HHRAKS-- 504 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~-~~~~~~~~~~~~~id~~~~~-------~~~~~i-- 504 (587)
....|+.-+|+++| ..-+.++|.|=... +.-.-+..|.++| +.......+.++.+.+..-. .++|++
T Consensus 5 G~v~LD~~tFdKvi-~kf~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~k 81 (126)
T PF07912_consen 5 GCVPLDELTFDKVI-PKFKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDK 81 (126)
T ss_dssp TSEEESTTHHHHHG-GGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SC
T ss_pred ceeeccceehhhee-ccCceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCc
Confidence 45678899999988 55689999995433 3345668899999 55555568999998775421 367877
Q ss_pred CcCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHhhCCCC
Q 007850 505 DGFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKNASIP 545 (587)
Q Consensus 505 ~~~Pt~~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~~~~~~ 545 (587)
..+|.+++|.++.. .|++| .|..+.+.|++|+.+|+..=
T Consensus 82 e~fPv~~LF~~~~~--~pv~~p~~~~~t~~~l~~fvk~~t~~y 122 (126)
T PF07912_consen 82 EDFPVIYLFVGDKE--EPVRYPFDGDVTADNLQRFVKSNTGLY 122 (126)
T ss_dssp CC-SEEEEEESSTT--SEEEE-TCS-S-HHHHHHHHHHTSS--
T ss_pred ccCCEEEEecCCCC--CCccCCccCCccHHHHHHHHHhCCCee
Confidence 57999999996655 78999 88999999999999997643
No 281
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.73 E-value=0.0003 Score=56.36 Aligned_cols=87 Identities=17% Similarity=0.338 Sum_probs=70.3
Q ss_pred hhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC--e
Q 007850 101 RNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--Q 178 (587)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g--~ 178 (587)
+.++..+...++++|.|+.++|. .+...|.++|..+.+ .+.|+.+. +..+.+++++. -|++++|+.+ .
T Consensus 8 ~~l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~---~~~F~~~~---~~~~~~~~~~~-~~~i~l~~~~~~~ 77 (97)
T cd02981 8 EELEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRD---DYGFGHTS---DKEVAKKLKVK-PGSVVLFKPFEEE 77 (97)
T ss_pred HHHHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhccc---CCeEEEEC---hHHHHHHcCCC-CCceEEeCCcccC
Confidence 44566777889999999999998 467889999998876 58888776 46777888775 5999999754 6
Q ss_pred eeEeecCCCHHHHHHHHHH
Q 007850 179 HKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 179 ~~~~~g~~~~~~l~~~i~~ 197 (587)
...|.|..+.+.|.+||..
T Consensus 78 ~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 78 PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred CccCCCCCCHHHHHHHHHh
Confidence 6779999999999999864
No 282
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.73 E-value=3.7e-05 Score=64.67 Aligned_cols=68 Identities=21% Similarity=0.375 Sum_probs=42.9
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc---CCCCcCcEEEEEeCC-Ccc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR---AKSDGFPTILFFPAG-NKS 519 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~i~~~Pt~~~~~~~-~~~ 519 (587)
.+...++.|..+|||.|....|.+.++++..++ ..+.++..|.+.....+ .+..++|+++++..+ +.+
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~-i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~~l 111 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPN-IEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGKEL 111 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TT-EEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--EE
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCC-CeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCCEe
Confidence 445678889999999999999999999998643 35666666655544433 468899999999654 544
No 283
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.71 E-value=0.00021 Score=53.57 Aligned_cols=67 Identities=18% Similarity=0.318 Sum_probs=44.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHH----cCCCCCcEEEEEeCCeeeEeecCCCHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE----YDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~~~~~g~~~~~~g~~~~~ 189 (587)
++.|+++||++|+.....+.+. ++.+..+|.+.++..... .++.++|++++ +|. .. +..+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~---------~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~--~i-~g~~~~ 67 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER---------GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE--HL-SGFRPD 67 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC---------CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE--EE-ecCCHH
Confidence 5789999999999988777652 355666777665544333 36889999865 442 22 334556
Q ss_pred HHHHH
Q 007850 190 AIVTW 194 (587)
Q Consensus 190 ~l~~~ 194 (587)
.|.++
T Consensus 68 ~l~~~ 72 (73)
T cd02976 68 KLRAL 72 (73)
T ss_pred HHHhh
Confidence 66554
No 284
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=97.71 E-value=0.00013 Score=68.56 Aligned_cols=83 Identities=19% Similarity=0.338 Sum_probs=60.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeC----------------C------------------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA----------------T------------------ 154 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------~------------------ 154 (587)
+++.+++.|..+.||+|+++++.+.++.+. +..+.+..+.. .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~----~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~ 181 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL----GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSP 181 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC----CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCc
Confidence 467889999999999999999998876431 11222221211 1
Q ss_pred --------CcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHHHHh
Q 007850 155 --------EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 155 --------~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~ 198 (587)
++..+++++||+++|+++ +.+|... .|..+.+.|.++|...
T Consensus 182 ~~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~~--~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 182 ASCDVDIADHYALGVQFGVQGTPAIV-LSNGTLV--PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccccchHHHhHHHHHHcCCccccEEE-EcCCeEe--eCCCCHHHHHHHHHHc
Confidence 123788899999999998 6788543 7999999999998754
No 285
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00019 Score=57.07 Aligned_cols=73 Identities=21% Similarity=0.407 Sum_probs=52.7
Q ss_pred chhHHhh--cCCCcEEEEEeCC--------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc---------ccCC
Q 007850 443 NFDEIVL--DESKDVLLEIYAP--------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---------HRAK 503 (587)
Q Consensus 443 ~f~~~v~--~~~~~v~v~f~~~--------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---------~~~~ 503 (587)
+|++.+. .+++.++|+|+++ ||+.|.+..|++.+..+..+. ++.|+.+++..... .+.+
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~--~~~~v~v~VG~rp~Wk~p~n~FR~d~~ 91 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE--DVHFVHVYVGNRPYWKDPANPFRKDPG 91 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC--ceEEEEEEecCCCcccCCCCccccCCC
Confidence 4555542 2445599999884 999999999999999886665 67788887765332 1234
Q ss_pred C-CcCcEEEEEeCCC
Q 007850 504 S-DGFPTILFFPAGN 517 (587)
Q Consensus 504 i-~~~Pt~~~~~~~~ 517 (587)
+ .++||++=|.++.
T Consensus 92 ~lt~vPTLlrw~~~~ 106 (128)
T KOG3425|consen 92 ILTAVPTLLRWKRQP 106 (128)
T ss_pred ceeecceeeEEcCcc
Confidence 4 8999999997643
No 286
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.69 E-value=0.00015 Score=68.18 Aligned_cols=88 Identities=16% Similarity=0.142 Sum_probs=66.3
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------ccccCCCCcCcEEEEEeCCCccc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------EHHRAKSDGFPTILFFPAGNKSF 520 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------~~~~~~i~~~Pt~~~~~~~~~~~ 520 (587)
++.-+++||.+.|++|+.+.|++..+++++.- .+..+.+|.... ...++++..+|++++...+....
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~~ygi--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~ 227 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAKEYGI--SVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKM 227 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcE
Confidence 55889999999999999999999999999863 566666665421 23478899999999885553332
Q ss_pred CccccccccCHHHHHHHHHhhC
Q 007850 521 DPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 521 ~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
.|+. .|..+.++|.+-|...+
T Consensus 228 ~pv~-~G~iS~deL~~Ri~~v~ 248 (256)
T TIGR02739 228 SPLA-YGFISQDELKERILNVL 248 (256)
T ss_pred EEEe-eccCCHHHHHHHHHHHH
Confidence 4444 48999999887766543
No 287
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.65 E-value=0.00014 Score=61.29 Aligned_cols=68 Identities=22% Similarity=0.472 Sum_probs=51.8
Q ss_pred CCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----------------------ccCCCC-
Q 007850 451 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------HRAKSD- 505 (587)
Q Consensus 451 ~~~~v~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------------~~~~i~- 505 (587)
.+++++|.||+. ||+.|+...+.+.++...++. .++.++.|..+.... ..+++.
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~-~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKD-KGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGIED 102 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHT-TTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTCEE
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhcc-ceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCCcc
Confidence 568999999999 999999999999999999885 357777776654321 225555
Q ss_pred -----cCcEEEEEeCCCcc
Q 007850 506 -----GFPTILFFPAGNKS 519 (587)
Q Consensus 506 -----~~Pt~~~~~~~~~~ 519 (587)
.+|+++++..+..+
T Consensus 103 ~~~~~~~p~~~lid~~g~I 121 (124)
T PF00578_consen 103 EKDTLALPAVFLIDPDGKI 121 (124)
T ss_dssp TTTSEESEEEEEEETTSBE
T ss_pred ccCCceEeEEEEECCCCEE
Confidence 78888888666554
No 288
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.0004 Score=65.20 Aligned_cols=113 Identities=17% Similarity=0.353 Sum_probs=87.7
Q ss_pred CCCCeEEcChhhHHHHHhCC---CeEEEEEECC----CChhhhhhhHHHHHHHHHhhhc-----CCcEEEEEEeCCCcHH
Q 007850 91 DDKDVVVLKERNFSDVIENN---KFVMVEFYAP----WCGHCQALAPEYAAAATELKSA-----NESVVLAKVDATEENE 158 (587)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~---~~~~v~f~a~----wC~~C~~~~p~~~~~~~~~~~~-----~~~v~~~~vd~~~~~~ 158 (587)
++..|+.+++++|...+... -.++|+|.|. .|.-|+++..+|.-++..+... +.++-|..||.++.++
T Consensus 38 s~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 38 SESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 34679999999999988542 3478888876 5999999999999999876543 3468999999999999
Q ss_pred HHHHcCCCCCcEEEEEe--CC------eeeEeecCCCHHHHHHHHHHhcCCCc
Q 007850 159 LAHEYDVQGFPTIYFFV--DG------QHKAYNGGRTKDAIVTWIKKKIGPGI 203 (587)
Q Consensus 159 l~~~~~i~~~Pt~~~~~--~g------~~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (587)
+-+.+++...|++++|. .| ....++-...++.+.+|+.+...-.+
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v 170 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNV 170 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhhee
Confidence 99999999999999994 23 11222323448999999988764433
No 289
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00046 Score=64.80 Aligned_cols=115 Identities=14% Similarity=0.274 Sum_probs=87.0
Q ss_pred CCceEEEcCcchhHHhhcCCC--cEEEEEeCC----CChhhhhhhHHHHHHHHHhcCC------CcEEEEEEeCCccc--
Q 007850 433 DGDVKIVVGNNFDEIVLDESK--DVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGV------DSIVIAKMDGTTNE-- 498 (587)
Q Consensus 433 ~~~~~~l~~~~f~~~v~~~~~--~v~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~------~~~~~~~id~~~~~-- 498 (587)
+..|..++++.|..++....+ .++|+|.|. .|.-|+.+...+.-++..+... .++-|..+|.++..
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~~ 118 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQV 118 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHHH
Confidence 357899999999999965444 588999886 6999999999999999987532 36888888887654
Q ss_pred cccCCCCcCcEEEEE-eCCCcccCcccccc---ccCHHHHHHHHHhhCCCCCc
Q 007850 499 HHRAKSDGFPTILFF-PAGNKSFDPINVDV---DRTVVALYKFLKKNASIPFK 547 (587)
Q Consensus 499 ~~~~~i~~~Pt~~~~-~~~~~~~~~~~~~g---~~~~~~l~~~i~~~~~~~~~ 547 (587)
.+.+++.++|++++| |+.....+...+++ ....+++.+|+++.++....
T Consensus 119 Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv~v~ 171 (331)
T KOG2603|consen 119 FQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKVNVR 171 (331)
T ss_pred HHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhheee
Confidence 378999999999999 33222213334442 34589999999998876644
No 290
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.62 E-value=0.00061 Score=55.84 Aligned_cols=101 Identities=11% Similarity=0.032 Sum_probs=80.2
Q ss_pred eEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHH---hhhcCCcEEEEEEeCCCcHHHHHHcCCCC--Cc
Q 007850 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATE---LKSANESVVLAKVDATEENELAHEYDVQG--FP 169 (587)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~---~~~~~~~v~~~~vd~~~~~~l~~~~~i~~--~P 169 (587)
|.++|.++...+...+.+..+.|+. -..-....+.+.++|++ +++ ++.|+.+|.+......+.+|+.. +|
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~--~~~~~~~~~~~~~vAk~~~~~kg---ki~Fv~~d~~~~~~~~~~fgl~~~~~P 75 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHD--KDDLESLKEFKQAVARQLISEKG---AINFLTADGDKFRHPLLHLGKTPADLP 75 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEec--chHHHHHHHHHHHHHHHHHhcCc---eEEEEEEechHhhhHHHHcCCCHhHCC
Confidence 3467788888888777776666772 23346788999999999 776 79999999999888899999997 99
Q ss_pred EEEEEeC-C-eeeE-eecCCCHHHHHHHHHHhcC
Q 007850 170 TIYFFVD-G-QHKA-YNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 170 t~~~~~~-g-~~~~-~~g~~~~~~l~~~i~~~~~ 200 (587)
.+.+... + ..+. +.+..+.+.|.+|++..+.
T Consensus 76 ~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 76 VIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred EEEEEcchhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 9999863 3 3444 6688999999999998764
No 291
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.61 E-value=0.00017 Score=56.10 Aligned_cols=76 Identities=24% Similarity=0.363 Sum_probs=54.6
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH----HHHHHcC--CCCCcEEEEEeCCeeeEeecCC
Q 007850 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYD--VQGFPTIYFFVDGQHKAYNGGR 186 (587)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~--i~~~Pt~~~~~~g~~~~~~g~~ 186 (587)
-++.|+.+||++|++....|+++..++. ++.+..+|.+.++ ++.+..+ +..+|+++ .+|..+ |
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~----~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~if--i~g~~i---g-- 70 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERD----DFDYRYVDIHAEGISKADLEKTVGKPVETVPQIF--VDQKHI---G-- 70 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhccccc----CCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEE--ECCEEE---c--
Confidence 3788999999999999999999987653 4777778877643 4554444 57899975 467432 2
Q ss_pred CHHHHHHHHHHhc
Q 007850 187 TKDAIVTWIKKKI 199 (587)
Q Consensus 187 ~~~~l~~~i~~~~ 199 (587)
..+++.++++..+
T Consensus 71 g~~~~~~~~~~~~ 83 (85)
T PRK11200 71 GCTDFEAYVKENL 83 (85)
T ss_pred CHHHHHHHHHHhc
Confidence 3467777776654
No 292
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=97.60 E-value=0.00024 Score=66.32 Aligned_cols=88 Identities=17% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------ccccCCCCcCcEEEEEeCCCccc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------EHHRAKSDGFPTILFFPAGNKSF 520 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------~~~~~~i~~~Pt~~~~~~~~~~~ 520 (587)
++.-+++||.+.|++|..+.|++..++++++- .+..+.+|.... ...++++..+|++++...+....
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~ 220 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSV 220 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcE
Confidence 45789999999999999999999999999864 576777775322 12468999999999986554322
Q ss_pred CccccccccCHHHHHHHHHhhC
Q 007850 521 DPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 521 ~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
.|+. .|..+.++|.+-|...+
T Consensus 221 ~pv~-~G~iS~deL~~Ri~~v~ 241 (248)
T PRK13703 221 RPLS-YGFITQDDLAKRFLNVS 241 (248)
T ss_pred EEEe-eccCCHHHHHHHHHHHH
Confidence 4444 48999999887766543
No 293
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=97.58 E-value=0.0003 Score=54.71 Aligned_cols=75 Identities=13% Similarity=0.177 Sum_probs=52.2
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----ccc---cCCCCcCcEEEEEeCCCcccCccccc
Q 007850 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----EHH---RAKSDGFPTILFFPAGNKSFDPINVD 526 (587)
Q Consensus 455 v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----~~~---~~~i~~~Pt~~~~~~~~~~~~~~~~~ 526 (587)
-++.|+.+||++|+++...|+++...+.+ +.+..+|...+ ... ..+...+|++++ +|+.+
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~---i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~~i------- 69 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDD---FDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQKHI------- 69 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccC---CcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCEEE-------
Confidence 36789999999999999999999876533 45555555443 121 224578999764 66443
Q ss_pred cccCHHHHHHHHHhhCC
Q 007850 527 VDRTVVALYKFLKKNAS 543 (587)
Q Consensus 527 g~~~~~~l~~~i~~~~~ 543 (587)
| ..++|.++++.+.+
T Consensus 70 g--g~~~~~~~~~~~~~ 84 (85)
T PRK11200 70 G--GCTDFEAYVKENLG 84 (85)
T ss_pred c--CHHHHHHHHHHhcc
Confidence 2 35788888887764
No 294
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.00048 Score=57.55 Aligned_cols=85 Identities=18% Similarity=0.261 Sum_probs=60.3
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHH---HHHHhcCCCcEEEEEEeCCcc------------------ccccCCCCcCc
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNK---LAKHLRGVDSIVIAKMDGTTN------------------EHHRAKSDGFP 508 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~---~~~~~~~~~~~~~~~id~~~~------------------~~~~~~i~~~P 508 (587)
..++..+++|-++.|..|..+...+.. +.+.+.. .+.++.++.... .++.+.++++|
T Consensus 40 ~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~--hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstP 117 (182)
T COG2143 40 PNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE--HFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTP 117 (182)
T ss_pred ccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh--CeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCc
Confidence 457889999999999999999887754 3334444 466666665431 12457999999
Q ss_pred EEEEEeC-CCcccCccccccccCHHHHHHHHH
Q 007850 509 TILFFPA-GNKSFDPINVDVDRTVVALYKFLK 539 (587)
Q Consensus 509 t~~~~~~-~~~~~~~~~~~g~~~~~~l~~~i~ 539 (587)
|+++|.. |+.+. ...|...+++.+..++
T Consensus 118 tfvFfdk~Gk~Il---~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 118 TFVFFDKTGKTIL---ELPGYMPPEQFLAVLK 146 (182)
T ss_pred eEEEEcCCCCEEE---ecCCCCCHHHHHHHHH
Confidence 9999965 45554 6778887777555444
No 295
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.55 E-value=0.00018 Score=62.17 Aligned_cols=80 Identities=13% Similarity=0.052 Sum_probs=53.4
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------------cccCCCCcC
Q 007850 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------HHRAKSDGF 507 (587)
Q Consensus 452 ~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----------------------~~~~~i~~~ 507 (587)
++.++|+|| +.||+.|....+.+.++...+.. .++.++.|..+... ...|++...
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~-~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKA-LGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHH-CCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 789999999 58999999999999999998865 34555555443211 123566666
Q ss_pred ---------cEEEEEeC-CCcccCccccccccCHHHHH
Q 007850 508 ---------PTILFFPA-GNKSFDPINVDVDRTVVALY 535 (587)
Q Consensus 508 ---------Pt~~~~~~-~~~~~~~~~~~g~~~~~~l~ 535 (587)
|+++++.. |+.+. .+.|......+.
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~---~~~g~~~~~~~~ 136 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVK---VWRKVKPKGHAE 136 (140)
T ss_pred cccccCCcceeEEEECCCCEEEE---EEecCCccchHH
Confidence 88888854 54443 566655444433
No 296
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.55 E-value=0.0028 Score=67.67 Aligned_cols=176 Identities=15% Similarity=0.140 Sum_probs=114.5
Q ss_pred cEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCCCCH
Q 007850 326 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTL 404 (587)
Q Consensus 326 ~~il~~~~~-~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~ 404 (587)
..+.+|.+. ..|.+..+.+++++.- .+++.+...+.. ....|.+.+...+......|-|-..-
T Consensus 21 v~~~~~~~~~~~~~~~~~~~~~~~~~-s~ki~~~~~~~~---------------~~~~p~~~~~~~~~~~~i~f~g~P~g 84 (515)
T TIGR03140 21 VTLVLSAGSHEKSKELLELLDEIASL-SDKISLTQNTAD---------------TLRKPSFTILRDGADTGIRFAGIPGG 84 (515)
T ss_pred EEEEEEeCCCchhHHHHHHHHHHHHh-CCCeEEEEecCC---------------cCCCCeEEEecCCcccceEEEecCCc
Confidence 445566554 4567777777777763 356666443311 12358887764433334556676777
Q ss_pred HHHHHHHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCCCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007850 405 DKIKTFGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDESKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483 (587)
Q Consensus 405 e~i~~fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~~~-v~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 483 (587)
..+..|+..+++-.-.. ..|+.+..+. +..-+++ -+-.|.++.|++|......+..++...+
T Consensus 85 ~Ef~s~i~~i~~~~~~~---------------~~l~~~~~~~-~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p- 147 (515)
T TIGR03140 85 HEFTSLVLAILQVGGHG---------------PKLDEGIIDR-IRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP- 147 (515)
T ss_pred HHHHHHHHHHHHhcCCC---------------CCCCHHHHHH-HHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC-
Confidence 78888888877632221 2343344333 3333444 4888999999999999899988888755
Q ss_pred CCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhhCC
Q 007850 484 VDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 484 ~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
++..-.+|..... ..+|++.++|++++ ++.. .+.|..+.+++.+.+.+...
T Consensus 148 --~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~~-----~~~g~~~~~~~~~~l~~~~~ 200 (515)
T TIGR03140 148 --NISHTMIDGALFQDEVEALGIQGVPAVFL--NGEE-----FHNGRMDLAELLEKLEETAG 200 (515)
T ss_pred --CceEEEEEchhCHHHHHhcCCcccCEEEE--CCcE-----EEecCCCHHHHHHHHhhccC
Confidence 3555667765543 57899999999876 4544 57788888888888876643
No 297
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=97.54 E-value=0.00028 Score=54.55 Aligned_cols=83 Identities=17% Similarity=0.227 Sum_probs=62.4
Q ss_pred cccccchhHHHHhcccCCeEEEEEecCCCCcchHHHHHhc-ccCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccC-C
Q 007850 203 IYNITTLDEAERVLTSETKVVLGYLNSLVGSESEVLADAS-RLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKE-T 280 (587)
Q Consensus 203 ~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~f~~~a-~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~-~ 280 (587)
+.++.+.+++.. +......+||||.+.+++++..|..+| .++.+|.|+....+.. ..... ..+.+++||+. .
T Consensus 1 Ikef~~~~eL~~-id~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~G~~~-~~~~~----~~~~~i~frp~~~ 74 (91)
T cd03070 1 IKEFRNLDELNN-VDRSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGFGDVT-KPERP----PGDNIIYFPPGHN 74 (91)
T ss_pred CceecCHHHHHh-hCcCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEecccc-ccccC----CCCCeEEECCCCC
Confidence 346677788877 778889999999999999999999977 7899999999877654 22121 12456668886 4
Q ss_pred cceeeccCCCCC
Q 007850 281 EKISYFADGKFD 292 (587)
Q Consensus 281 ~~~~~y~~g~~~ 292 (587)
.....| .|.++
T Consensus 75 ~~~~~y-~G~~t 85 (91)
T cd03070 75 APDMVY-LGSLT 85 (91)
T ss_pred CCceEE-ccCCC
Confidence 555778 88774
No 298
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.53 E-value=0.0056 Score=65.96 Aligned_cols=177 Identities=15% Similarity=0.150 Sum_probs=120.7
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe-CC--eeeEeecCC
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV-DG--QHKAYNGGR 186 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~-~g--~~~~~~g~~ 186 (587)
+++.++.|+.+.|..|......++++++ +.+ ++.+...|...+.++.++|++...|++.+++ +| ..++|.|..
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~~-~s~---~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~~~~~i~f~g~P 441 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFAS-LSE---KLNSEAVNRGEEPESETLPKITKLPTVALLDDDGNYTGLKFHGVP 441 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHHh-cCC---cEEEEEeccccchhhHhhcCCCcCCEEEEEeCCCcccceEEEecC
Confidence 4567889999999999999999988884 444 6888889988889999999999999999995 55 448999999
Q ss_pred CHHHHHHHHHHhcCC--CcccccchhHHHHhcccCCeE-EEEEecCCCCc---chHHHHHhcccCCceeEEe---cCChh
Q 007850 187 TKDAIVTWIKKKIGP--GIYNITTLDEAERVLTSETKV-VLGYLNSLVGS---ESEVLADASRLEDDVNFYQ---TTNPD 257 (587)
Q Consensus 187 ~~~~l~~~i~~~~~~--~~~~i~~~~~~~~~~~~~~~~-~i~~~~~~~~~---~~~~f~~~a~~~~~~~F~~---~~~~~ 257 (587)
.-.++..||...+.- ....+ +.+..+....-+..+ +-+|....... .......++.....+.... ...++
T Consensus 442 ~G~Ef~s~i~~i~~~~~~~~~l-~~~~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~ 520 (555)
T TIGR03143 442 SGHELNSFILALYNAAGPGQPL-GEELLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPD 520 (555)
T ss_pred ccHhHHHHHHHHHHhcCCCCCC-CHHHHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHH
Confidence 889999998877632 23344 323333333333333 33444433322 2234444554443444333 34668
Q ss_pred HHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHH
Q 007850 258 VAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFV 300 (587)
Q Consensus 258 l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi 300 (587)
++++|++-. .|++++= + . ..+ .|..+.++|..||
T Consensus 521 ~~~~~~v~~---vP~~~i~---~-~-~~~-~G~~~~~~~~~~~ 554 (555)
T TIGR03143 521 LKDEYGIMS---VPAIVVD---D-Q-QVY-FGKKTIEEMLELI 554 (555)
T ss_pred HHHhCCcee---cCEEEEC---C-E-EEE-eeCCCHHHHHHhh
Confidence 898999875 6888852 1 2 334 6777888888886
No 299
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.52 E-value=0.00041 Score=63.77 Aligned_cols=79 Identities=25% Similarity=0.383 Sum_probs=55.7
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeC-----------------------------------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA----------------------------------- 153 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------------------------- 153 (587)
+++..++.|..+.|++|+++.+.+.+. .. +..+.+..+..
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~~----~~-~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~ 150 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKPN----AD-GVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPP 150 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhhc----cC-ceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCC
Confidence 367899999999999999999988761 11 11222222221
Q ss_pred --------CCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHH
Q 007850 154 --------TEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 154 --------~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i 195 (587)
.++..+++++||+++|+++ +.+|.. ..|..+.+.|.++|
T Consensus 151 ~~~~~~~i~~~~~l~~~~gi~gtPtii-~~~G~~--~~G~~~~~~l~~~L 197 (197)
T cd03020 151 AASCDNPVAANLALGRQLGVNGTPTIV-LADGRV--VPGAPPAAQLEALL 197 (197)
T ss_pred ccccCchHHHHHHHHHHcCCCcccEEE-ECCCeE--ecCCCCHHHHHhhC
Confidence 1223788899999999997 778854 56888888887664
No 300
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.51 E-value=0.0006 Score=48.95 Aligned_cols=54 Identities=24% Similarity=0.482 Sum_probs=40.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHH----HHHHcCCCCCcEEEEEeCCe
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDGQ 178 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g~ 178 (587)
++.|+.+||++|+.....|.+. ++.+-.+|.+.+++ +.+..+..++|++++ +|.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~---------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i--~g~ 58 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK---------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI--DGK 58 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT---------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE--TTE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc---------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE--CCE
Confidence 5789999999999998888431 47777788877643 333349999999875 553
No 301
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.48 E-value=0.00015 Score=56.25 Aligned_cols=70 Identities=16% Similarity=0.261 Sum_probs=47.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-------cccCCCCcCcEEEEEeCCCcccCccccccc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-------HHRAKSDGFPTILFFPAGNKSFDPINVDVD 528 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-------~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~ 528 (587)
++.|+++||++|+.+.+.|.++. +.. .+.++.+|...+. ....++.++|+++ -+|+.+. |
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~--~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~--i~g~~ig------g- 67 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP--AYEVVELDQLSNGSEIQDYLEEITGQRTVPNIF--INGKFIG------G- 67 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC--CCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEE--ECCEEEc------C-
Confidence 47899999999999999999976 222 3777788775432 1235788999974 3554331 2
Q ss_pred cCHHHHHHHHHh
Q 007850 529 RTVVALYKFLKK 540 (587)
Q Consensus 529 ~~~~~l~~~i~~ 540 (587)
.++++++.++
T Consensus 68 --~~~~~~~~~~ 77 (84)
T TIGR02180 68 --CSDLLALYKS 77 (84)
T ss_pred --HHHHHHHHHc
Confidence 3566665553
No 302
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=97.48 E-value=0.001 Score=51.74 Aligned_cols=109 Identities=19% Similarity=0.250 Sum_probs=76.3
Q ss_pred CceeecCCCCccccccCCc-ccEEEEEEec--cchhhHHHHHHHHHHhccC--ceEEEEEEcCCcccc-cchhhhcCCcC
Q 007850 306 PLVTIFTRENAPSVFESPI-KNQLLLFAVS--NDSEKLLPVFEEAAKSFKG--KLIFVYVQMDNEDVG-KPVSEYFGITG 379 (587)
Q Consensus 306 p~v~~lt~~~~~~~~~~~~-~~~il~~~~~--~~~~~~~~~l~~vA~~~~~--~l~f~~vd~~~~~~~-~~~~~~~gi~~ 379 (587)
|.++++++++..++..... -.++++|... .+..+++..++++|+.+.+ ++.|+|+|.+..... ...-+.||++-
T Consensus 1 ptlrkl~~~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl 80 (120)
T cd03074 1 PTLRKLKPENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDL 80 (120)
T ss_pred CchhhccHHHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCccc
Confidence 4456666766666554432 3567888876 4567899999999999875 699999998874322 22355778876
Q ss_pred CCCcEEEEecCCC--CccccCCC---CCCHHHHHHHHHHHh
Q 007850 380 EAPKVLAYTGNDD--AKKHILDG---ELTLDKIKTFGEDFL 415 (587)
Q Consensus 380 ~~~p~~~i~~~~~--~~~y~~~~---~~t~e~i~~fi~~~~ 415 (587)
. .|.+.+++... +.-+.+.+ ..|.+.|+.|+++++
T Consensus 81 ~-~PqIGVV~vtdadSvW~~m~~~~d~~t~~~Le~WiedVL 120 (120)
T cd03074 81 F-RPQIGVVNVTDADSVWMEMDDDEDLPTAEELEDWIEDVL 120 (120)
T ss_pred C-CCceeeEecccccceeEecccccccCcHHHHHHHHHhhC
Confidence 5 57777776553 44445544 389999999999875
No 303
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.47 E-value=0.0011 Score=51.05 Aligned_cols=94 Identities=20% Similarity=0.356 Sum_probs=74.7
Q ss_pred hhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC--cHHHHHHcCCC----CCc-EEE
Q 007850 100 ERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE--ENELAHEYDVQ----GFP-TIY 172 (587)
Q Consensus 100 ~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~--~~~l~~~~~i~----~~P-t~~ 172 (587)
...|..+++....++|.|..+--. -......|.++|+..++ .-.++.|||.+ ...||+++.|. .-| ++.
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~-a~~~Lk~~~~~A~~vkG---~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~Lk 84 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKS-AEALLKLLSDVAQAVKG---QGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELK 84 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhh-HHHHHHHHHHHHHHhcC---ceeEEEEecCChHHHHHHHHHccCCCCCCCcchhh
Confidence 478889998888889988776443 34455689999999988 56889999997 67899999988 445 455
Q ss_pred EEeCC-eeeEeecCCCHHHHHHHHHH
Q 007850 173 FFVDG-QHKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 173 ~~~~g-~~~~~~g~~~~~~l~~~i~~ 197 (587)
-|++| -...|....+...+..|++.
T Consensus 85 HYKdG~fHkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 85 HYKDGDFHTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred cccCCCccccccchhhHHHHHHHhhC
Confidence 67899 45689999999999999863
No 304
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.44 E-value=0.0039 Score=52.67 Aligned_cols=108 Identities=13% Similarity=0.257 Sum_probs=79.5
Q ss_pred CeEEcChhhHHH-HHhCCCeEEEEEECC--CChh-h-hhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCC--
Q 007850 94 DVVVLKERNFSD-VIENNKFVMVEFYAP--WCGH-C-QALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ-- 166 (587)
Q Consensus 94 ~v~~l~~~~~~~-~~~~~~~~~v~f~a~--wC~~-C-~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~-- 166 (587)
.+++|+.+++-. .=..++.-+|.|.-. -|.+ + ......|.++|+.+++ ..+.|+.+|.++...+.+.||+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kg--k~i~Fv~vd~~~~~~~~~~fgl~~~ 80 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKK--KPWGWLWTEAGAQLDLEEALNIGGF 80 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcC--CcEEEEEEeCcccHHHHHHcCCCcc
Confidence 577888776643 334455556666432 1322 3 3567889999999988 23999999999998999999995
Q ss_pred CCcEEEEEeCC--eeeEeecCCCHHHHHHHHHHhcCCCc
Q 007850 167 GFPTIYFFVDG--QHKAYNGGRTKDAIVTWIKKKIGPGI 203 (587)
Q Consensus 167 ~~Pt~~~~~~g--~~~~~~g~~~~~~l~~~i~~~~~~~~ 203 (587)
++|+++++... +...+.|..+.+.|.+|+...+...+
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 49999999633 33337899999999999999986543
No 305
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=97.44 E-value=0.0026 Score=50.58 Aligned_cols=90 Identities=18% Similarity=0.266 Sum_probs=62.8
Q ss_pred ChhhHHHHHhC--CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH----HHHHHcCCC-CCcEE
Q 007850 99 KERNFSDVIEN--NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYDVQ-GFPTI 171 (587)
Q Consensus 99 ~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~-~~Pt~ 171 (587)
+.+++++++.. .++++|.=.++.|+-+......|++.+....+ .+.++.+|.-+++ .++++|||. .-|.+
T Consensus 6 t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~---~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~ 82 (105)
T PF11009_consen 6 TEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPD---EIPVYYLDVIEYRPVSNAIAEDFGVKHESPQV 82 (105)
T ss_dssp SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-------EEEEEGGGGHHHHHHHHHHHT----SSEE
T ss_pred CHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCc---cceEEEEEEEeCchhHHHHHHHhCCCcCCCcE
Confidence 45788888866 78888888999999999999999999887765 4888999988876 467889987 58999
Q ss_pred EEEeCCeee--EeecCCCHHHH
Q 007850 172 YFFVDGQHK--AYNGGRTKDAI 191 (587)
Q Consensus 172 ~~~~~g~~~--~~~g~~~~~~l 191 (587)
+++++|..+ .=-+..+.+.|
T Consensus 83 ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 83 ILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEECCEEEEECccccCCHHhc
Confidence 999999443 22344555544
No 306
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.43 E-value=0.0012 Score=54.01 Aligned_cols=98 Identities=11% Similarity=0.123 Sum_probs=70.7
Q ss_pred EcChhhHHHHHhCCCeEEEEE---ECCCChhhhhhhHHHHHHHHHhh-hcCCcEEEEEEeCCCcHHHHHHcCCCC----C
Q 007850 97 VLKERNFSDVIENNKFVMVEF---YAPWCGHCQALAPEYAAAATELK-SANESVVLAKVDATEENELAHEYDVQG----F 168 (587)
Q Consensus 97 ~l~~~~~~~~~~~~~~~~v~f---~a~wC~~C~~~~p~~~~~~~~~~-~~~~~v~~~~vd~~~~~~l~~~~~i~~----~ 168 (587)
.+|.+|...... .+..++++ |+..-..-......+.++|+.++ + ++.|+.+|.++.....+.+|+.. +
T Consensus 3 ~~~~en~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~g---ki~Fv~~D~~~~~~~l~~fgl~~~~~~~ 78 (111)
T cd03073 3 HRTKDNRAQFTK-KPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDR---KLNFAVADKEDFSHELEEFGLDFSGGEK 78 (111)
T ss_pred eeccchHHHhcc-CCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCC---eEEEEEEcHHHHHHHHHHcCCCcccCCC
Confidence 455666666643 33444433 22223444678899999999998 5 69999999998877889999984 9
Q ss_pred cEEEEEe-CCeeeEeecCC-CHHHHHHHHHHh
Q 007850 169 PTIYFFV-DGQHKAYNGGR-TKDAIVTWIKKK 198 (587)
Q Consensus 169 Pt~~~~~-~g~~~~~~g~~-~~~~l~~~i~~~ 198 (587)
|++.++. ++..+...+.. +.+.|.+|++..
T Consensus 79 P~~~i~~~~~~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 79 PVVAIRTAKGKKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CEEEEEeCCCCccCCCcccCCHHHHHHHHHHh
Confidence 9999987 44444456778 999999999865
No 307
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=97.42 E-value=0.0013 Score=57.68 Aligned_cols=31 Identities=39% Similarity=0.671 Sum_probs=27.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHh
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATEL 139 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~ 139 (587)
+.+++++.|+.++||+|+.+.|.+.++...+
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 4678999999999999999999999987665
No 308
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.39 E-value=0.0029 Score=56.11 Aligned_cols=84 Identities=20% Similarity=0.377 Sum_probs=64.0
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-------------------------------
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN------------------------------- 157 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~------------------------------- 157 (587)
..+++|+.|+...||+|..+.+.+.++.+++-+.+ ++.+.-++.....
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQ 89 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHC
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 46789999999999999999999999998882222 6877777653111
Q ss_pred -------------------------------------HHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHHHH
Q 007850 158 -------------------------------------ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKK 197 (587)
Q Consensus 158 -------------------------------------~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~ 197 (587)
..+++++|.++||+++ ||+. +.|..+.++|.++|.+
T Consensus 90 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~~--~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 90 ENFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGKY--VVGPYTIEELKELIDK 162 (162)
T ss_dssp HSTSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTCE--EETTTSHHHHHHHHHH
T ss_pred hccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCEE--eCCCCCHHHHHHHHcC
Confidence 4456689999999877 8865 4888999999988864
No 309
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.36 E-value=0.001 Score=54.87 Aligned_cols=97 Identities=8% Similarity=0.026 Sum_probs=66.5
Q ss_pred chhHHh---hcCCCcEEEEEeCC----CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEE
Q 007850 443 NFDEIV---LDESKDVLLEIYAP----WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTIL 511 (587)
Q Consensus 443 ~f~~~v---~~~~~~v~v~f~~~----~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pt~~ 511 (587)
+|.+.+ .+..|.++|++|++ ||..|+..... .++.+-+.. ++.+...|+...+. ..+++.++|++.
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~-~~v~~~ln~--~fv~w~~dv~~~eg~~la~~l~~~~~P~~~ 81 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCA-PEVIEYINT--RMLFWACSVAKPEGYRVSQALRERTYPFLA 81 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCC-HHHHHHHHc--CEEEEEEecCChHHHHHHHHhCCCCCCEEE
Confidence 344444 45678999999999 89999655411 223333333 58889999987664 468999999999
Q ss_pred EE-eCCCcccCccccccccCHHHHHHHHHhhC
Q 007850 512 FF-PAGNKSFDPINVDVDRTVVALYKFLKKNA 542 (587)
Q Consensus 512 ~~-~~~~~~~~~~~~~g~~~~~~l~~~i~~~~ 542 (587)
++ +.++...-..+..|..++++++..|....
T Consensus 82 ~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~ 113 (116)
T cd02991 82 MIMLKDNRMTIVGRLEGLIQPEDLINRLTFIM 113 (116)
T ss_pred EEEecCCceEEEEEEeCCCCHHHHHHHHHHHH
Confidence 88 22222111237889999999999887643
No 310
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=97.32 E-value=0.0029 Score=50.83 Aligned_cols=75 Identities=20% Similarity=0.426 Sum_probs=64.6
Q ss_pred hhhHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 100 ERNFSDVI--ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 100 ~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
....++++ ...+.++|-|...|-|.|.++-..|.++++.+.. =..++-||.++-+.+.+-|++...|++++|-++
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn---fa~IylvdideV~~~~~~~~l~~p~tvmfFfn~ 87 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN---FAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNN 87 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhh---ceEEEEEecchhhhhhhhhcccCCceEEEEEcC
Confidence 34555655 3457899999999999999999999999999877 578888999999999999999999999998766
No 311
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=97.28 E-value=0.001 Score=59.81 Aligned_cols=86 Identities=12% Similarity=0.084 Sum_probs=57.3
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------------------------------cc
Q 007850 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------HH 500 (587)
Q Consensus 452 ~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------------------~~ 500 (587)
++.++|+|| +.||+.|....+.|.++.+.+.+. ++.++.|..+... ..
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~-~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~~ 107 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKL-NAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKISR 107 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHHH
Confidence 688999999 899999999999999999999753 3444444443211 01
Q ss_pred cCCCC------cCcEEEEEe-CCCcccCccccc----cccCHHHHHHHHHhh
Q 007850 501 RAKSD------GFPTILFFP-AGNKSFDPINVD----VDRTVVALYKFLKKN 541 (587)
Q Consensus 501 ~~~i~------~~Pt~~~~~-~~~~~~~~~~~~----g~~~~~~l~~~i~~~ 541 (587)
.|++. ..|+.+++. +|.... .+. ..++.++|++.|+..
T Consensus 108 ~~gv~~~~~~~~~p~~~lID~~G~I~~---~~~~~~~~~~~~~~il~~l~~~ 156 (173)
T cd03015 108 DYGVLDEEEGVALRGTFIIDPEGIIRH---ITVNDLPVGRSVDETLRVLDAL 156 (173)
T ss_pred HhCCccccCCceeeEEEEECCCCeEEE---EEecCCCCCCCHHHHHHHHHHh
Confidence 24443 467888885 454432 232 234678888888753
No 312
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.26 E-value=0.00085 Score=58.44 Aligned_cols=104 Identities=22% Similarity=0.270 Sum_probs=78.2
Q ss_pred CceEEEc-CcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEE
Q 007850 434 GDVKIVV-GNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTI 510 (587)
Q Consensus 434 ~~~~~l~-~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~ 510 (587)
|....+. ..+|-+.+ .....||+.||-+.-..|+-|...|+.+|.++-. ..|+++|+.... +.+++|.-+|++
T Consensus 66 G~y~ev~~Ekdf~~~~-~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e---TrFikvnae~~PFlv~kL~IkVLP~v 141 (211)
T KOG1672|consen 66 GEYEEVASEKDFFEEV-KKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE---TRFIKVNAEKAPFLVTKLNIKVLPTV 141 (211)
T ss_pred ceEEEeccHHHHHHHh-hcCceEEEEEEcCCCcceehHHHHHHHHHHhccc---ceEEEEecccCceeeeeeeeeEeeeE
Confidence 3445555 56788776 4567899999999999999999999999998755 889999987766 478999999999
Q ss_pred EEEeCCCcccCccccc--c---ccCHHHHHHHHHhh
Q 007850 511 LFFPAGNKSFDPINVD--V---DRTVVALYKFLKKN 541 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~--g---~~~~~~l~~~i~~~ 541 (587)
.+|++|......+.|. | ..+.+.|..-|.+.
T Consensus 142 ~l~k~g~~~D~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 142 ALFKNGKTVDYVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred EEEEcCEEEEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 9999998876333443 2 23444455445443
No 313
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.24 E-value=0.002 Score=68.88 Aligned_cols=97 Identities=12% Similarity=0.248 Sum_probs=75.4
Q ss_pred EcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007850 97 VLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 97 ~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (587)
.|++...+.+-.- ++..+..|.+++||+|......+.+++... .+|.+-.||....++++.+|+|.++|++++
T Consensus 102 ~l~~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~----~~i~~~~id~~~~~~~~~~~~v~~VP~~~i-- 175 (517)
T PRK15317 102 KLDQEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLN----PNITHTMIDGALFQDEVEARNIMAVPTVFL-- 175 (517)
T ss_pred CCCHHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhC----CCceEEEEEchhCHhHHHhcCCcccCEEEE--
Confidence 3445544444433 345588999999999999999998888653 269999999999999999999999999965
Q ss_pred CCeeeEeecCCCHHHHHHHHHHhcC
Q 007850 176 DGQHKAYNGGRTKDAIVTWIKKKIG 200 (587)
Q Consensus 176 ~g~~~~~~g~~~~~~l~~~i~~~~~ 200 (587)
+|. ..+.|..+.+++.+.+.+..+
T Consensus 176 ~~~-~~~~g~~~~~~~~~~~~~~~~ 199 (517)
T PRK15317 176 NGE-EFGQGRMTLEEILAKLDTGAA 199 (517)
T ss_pred CCc-EEEecCCCHHHHHHHHhcccc
Confidence 553 457798999888888876544
No 314
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=97.23 E-value=0.0011 Score=58.29 Aligned_cols=57 Identities=12% Similarity=0.163 Sum_probs=39.6
Q ss_pred EEEcCcchhHHhhcCCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007850 437 KIVVGNNFDEIVLDESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (587)
Q Consensus 437 ~~l~~~~f~~~v~~~~~~v~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 495 (587)
..++++.+.-.-. .+++++|.||+. ||+.|....+.+.++.+.+.+. ++.++.|..+
T Consensus 16 ~~~~G~~~~l~~~-~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~-~v~vi~Is~d 73 (154)
T PRK09437 16 PDQDGEQVSLTDF-QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKA-GVVVLGISTD 73 (154)
T ss_pred eCCCCCEEeHHHh-CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 3445554433222 468899999976 6888999999999999998753 4556665554
No 315
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=97.21 E-value=0.0013 Score=59.86 Aligned_cols=89 Identities=12% Similarity=0.023 Sum_probs=56.6
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCC-cEEEEEEeCCc-------------------------cccccCC
Q 007850 451 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVD-SIVIAKMDGTT-------------------------NEHHRAK 503 (587)
Q Consensus 451 ~~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~-~~~~~~id~~~-------------------------~~~~~~~ 503 (587)
.++++||+|| +.||+.|....+.|.++...+.... .+..+..|... ..+..|+
T Consensus 30 ~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~~~g 109 (187)
T TIGR03137 30 KGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTRNFG 109 (187)
T ss_pred CCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHHHhC
Confidence 3678999999 9999999999999999999886532 34444433210 0012345
Q ss_pred CC------cCcEEEEEe-CCCcccCcccccc--ccCHHHHHHHHHh
Q 007850 504 SD------GFPTILFFP-AGNKSFDPINVDV--DRTVVALYKFLKK 540 (587)
Q Consensus 504 i~------~~Pt~~~~~-~~~~~~~~~~~~g--~~~~~~l~~~i~~ 540 (587)
+. ..|+.+++. +|.... ...... .+..++|++.|+.
T Consensus 110 v~~~~~g~~~p~tfiID~~G~I~~-~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 110 VLIEEAGLADRGTFVIDPEGVIQA-VEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred CcccCCCceeeEEEEECCCCEEEE-EEEeCCCCCCCHHHHHHHHHH
Confidence 54 358888885 454432 111111 4578888888754
No 316
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=97.21 E-value=0.0014 Score=58.32 Aligned_cols=42 Identities=21% Similarity=0.373 Sum_probs=33.9
Q ss_pred CCCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007850 451 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (587)
Q Consensus 451 ~~~~v~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 495 (587)
.++.++|+||++| |++|....|.|.++++.+. ++.++.+..+
T Consensus 43 ~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~---~~~vv~vs~D 85 (167)
T PRK00522 43 AGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD---NTVVLCISAD 85 (167)
T ss_pred CCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC---CcEEEEEeCC
Confidence 3679999999999 9999999999999998874 3555555444
No 317
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.16 E-value=0.0011 Score=51.14 Aligned_cols=56 Identities=18% Similarity=0.399 Sum_probs=41.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-----HHHHHcCCCCCcEEEEEeCCe
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEYDVQGFPTIYFFVDGQ 178 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~~i~~~Pt~~~~~~g~ 178 (587)
++.|+++|||+|+.....|.++.. .+.++.++...+. .+.+..|+.++|++ |.+|.
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~ 62 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGK 62 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCE
Confidence 578999999999999999988653 3566777766542 34455688999996 45563
No 318
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.16 E-value=0.001 Score=51.80 Aligned_cols=75 Identities=23% Similarity=0.326 Sum_probs=51.1
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH----HHHHHcCC--CCCcEEEEEeCCeeeEeecCCC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYDV--QGFPTIYFFVDGQHKAYNGGRT 187 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i--~~~Pt~~~~~~g~~~~~~g~~~ 187 (587)
++.|..+|||+|.+....|.++..... ++.+..+|...+. .+.+..+- .++|+++ .+|.. .| -
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~----~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~if--i~g~~---ig--G 70 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA----DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIF--VDEKH---VG--G 70 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC----CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEE--ECCEE---ec--C
Confidence 678999999999999999988764432 3667777776432 45566663 7899984 35532 23 3
Q ss_pred HHHHHHHHHHhc
Q 007850 188 KDAIVTWIKKKI 199 (587)
Q Consensus 188 ~~~l~~~i~~~~ 199 (587)
.++|.+++.+..
T Consensus 71 ~~dl~~~~~~~~ 82 (86)
T TIGR02183 71 CTDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHHhcc
Confidence 467777776643
No 319
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=97.11 E-value=0.00098 Score=57.64 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=37.0
Q ss_pred CCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCCC--cEEEEEEeCC
Q 007850 451 ESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVD--SIVIAKMDGT 495 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~~--~~~~~~id~~ 495 (587)
.++.++|.||++||++ |....+.+.++...+.... ++.++.|..+
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4789999999999998 9999999999999997642 4666666554
No 320
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=97.11 E-value=0.0013 Score=51.20 Aligned_cols=76 Identities=16% Similarity=0.183 Sum_probs=50.9
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----c-ccCC--CCcCcEEEEEeCCCcccCcccccc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----H-HRAK--SDGFPTILFFPAGNKSFDPINVDV 527 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----~-~~~~--i~~~Pt~~~~~~~~~~~~~~~~~g 527 (587)
+++|+.+||++|+++...|.++..... .+.+..+|...+. . ...+ ..++|++++ +|+.+ |
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~---~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~~i-------g 69 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA---DFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEKHV-------G 69 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC---CCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCEEe-------c
Confidence 678999999999999999998765433 2455555554322 1 1223 478999854 55433 3
Q ss_pred ccCHHHHHHHHHhhCCCC
Q 007850 528 DRTVVALYKFLKKNASIP 545 (587)
Q Consensus 528 ~~~~~~l~~~i~~~~~~~ 545 (587)
..++|.++++++.+++
T Consensus 70 --G~~dl~~~~~~~~~~~ 85 (86)
T TIGR02183 70 --GCTDFEQLVKENFDIE 85 (86)
T ss_pred --CHHHHHHHHHhccccc
Confidence 2578999998876653
No 321
>cd03071 PDI_b'_NRX PDIb' family, NRX subgroup, redox inactive TRX-like domain b'; composed of vertebrate nucleoredoxins (NRX). NRX is a 400-amino acid nuclear protein with one redox active TRX domain followed by one redox inactive TRX-like domain homologous to the b' domain of PDI. In vitro studies show that NRX has thiol oxidoreductase activity and that it may be involved in the redox regulation of transcription, in a manner different from that of TRX or glutaredoxin. NRX enhances the activation of NF-kB by TNFalpha, as well as PMA-1 induced AP-1 and FK-induced CREB activation. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. The mouse NRX gene is implicated in streptozotocin-induced diabetes. Similar to PDI, the b' domain of NRX is likely involved in substrate recognition.
Probab=97.10 E-value=0.0022 Score=49.89 Aligned_cols=89 Identities=24% Similarity=0.382 Sum_probs=61.4
Q ss_pred cEEEEEEecc---chhhHHHHHHHHHHhccC----c----eEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCc
Q 007850 326 NQLLLFAVSN---DSEKLLPVFEEAAKSFKG----K----LIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAK 394 (587)
Q Consensus 326 ~~il~~~~~~---~~~~~~~~l~~vA~~~~~----~----l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~ 394 (587)
+++++|.+.+ ..+...+.+..+|.++.. + ....++++++ +....+..+.++.. ..|.+++.+.....
T Consensus 16 p~lvlf~D~Edeg~l~~A~~llQpiAd~~~aka~~k~~dap~~f~~a~ed-e~tdsLRDf~nL~d-~~P~LviLDip~r~ 93 (116)
T cd03071 16 PCLVLFVDSEDEGESEAAKQLIQPIAEKIIAKYKAKEEEAPLLFFVAGED-DMTDSLRDYTNLPE-AAPLLTILDMSARA 93 (116)
T ss_pred ceEEEEecccchhhHHHHHHHHHHHHHHHHHHhhccCCCcceeeeeeccc-hHHHHHHHhcCCCc-cCceEEEEeccccc
Confidence 5567777553 356677778888776531 1 2333444443 33456666778854 57999999888888
Q ss_pred cccCC-CCCCHHHHHHHHHHHhc
Q 007850 395 KHILD-GELTLDKIKTFGEDFLE 416 (587)
Q Consensus 395 ~y~~~-~~~t~e~i~~fi~~~~~ 416 (587)
+|.+. .++|.+++.+|+.+|+.
T Consensus 94 ~~v~~~eeIT~e~~~~fv~~ylA 116 (116)
T cd03071 94 KYVMDVEEITPAIVEAFVSDFLA 116 (116)
T ss_pred eEeCchHhcCHHHHHHHHHHhhC
Confidence 89876 58999999999999863
No 322
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.10 E-value=0.004 Score=59.30 Aligned_cols=82 Identities=16% Similarity=0.287 Sum_probs=59.3
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeC----------------CC------------------
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA----------------TE------------------ 155 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~----------------~~------------------ 155 (587)
++.+++.|..+.||+|+++.+.+..+.+. + +|.+..+-. ..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~--g---~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~ 191 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS--G---KVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGL 191 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc--C---ceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCC
Confidence 56789999999999999999988776543 1 233222211 00
Q ss_pred ----------------cHHHHHHcCCCCCcEEEEEe-CCeeeEeecCCCHHHHHHHHH
Q 007850 156 ----------------ENELAHEYDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIK 196 (587)
Q Consensus 156 ----------------~~~l~~~~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~~i~ 196 (587)
+..+.+++||+++|++++-+ +|......|..+.+.|.+.+.
T Consensus 192 ~~~~~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~d~~G~~~~v~G~~~~~~L~~~l~ 249 (251)
T PRK11657 192 KPPASIPAAVRKQLADNQKLMDDLGANATPAIYYMDKDGTLQQVVGLPDPAQLAEIMG 249 (251)
T ss_pred CccccCCHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCEEEecCCCCHHHHHHHhC
Confidence 11466779999999999886 567778889999999987764
No 323
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=97.05 E-value=0.0014 Score=49.08 Aligned_cols=67 Identities=12% Similarity=0.153 Sum_probs=40.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccC----CCCcCcEEEEEeCCCcccCccccccccCH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA----KSDGFPTILFFPAGNKSFDPINVDVDRTV 531 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~ 531 (587)
++.|+++||++|+.+...+.+. + ..+....+|.+......+ .+..+|++++ +|. ...| .+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~-i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~~------~i~g-~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----G-IPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GDE------HLSG-FRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----C-CCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CCE------EEec-CCH
Confidence 5789999999999988888762 1 234444444332222222 5789999876 332 2334 455
Q ss_pred HHHHHH
Q 007850 532 VALYKF 537 (587)
Q Consensus 532 ~~l~~~ 537 (587)
..|.++
T Consensus 67 ~~l~~~ 72 (73)
T cd02976 67 DKLRAL 72 (73)
T ss_pred HHHHhh
Confidence 666655
No 324
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.93 E-value=0.0017 Score=56.65 Aligned_cols=46 Identities=15% Similarity=0.231 Sum_probs=35.0
Q ss_pred CCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc
Q 007850 452 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE 498 (587)
Q Consensus 452 ~~~-v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~ 498 (587)
++. +|++|+++||+.|+...|.|.++.+.+.. .++.++.|..+...
T Consensus 23 ~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~-~~v~vv~V~~~~~~ 69 (149)
T cd02970 23 EGPVVVVFYRGFGCPFCREYLRALSKLLPELDA-LGVELVAVGPESPE 69 (149)
T ss_pred CCCEEEEEECCCCChhHHHHHHHHHHHHHHHHh-cCeEEEEEeCCCHH
Confidence 344 45555699999999999999999999864 35777777765543
No 325
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.92 E-value=0.0086 Score=47.93 Aligned_cols=91 Identities=19% Similarity=0.215 Sum_probs=61.7
Q ss_pred CCeEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhH---HHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCc
Q 007850 93 KDVVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAP---EYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p---~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (587)
.....++..+++..+..+...+ .|++.-|..|.+... .+=++.+.+.+ .+..+.|.-..+..+..+||+..+|
T Consensus 9 ~g~~~vd~~~ld~~l~~~~~~v-lf~~gDp~r~~E~~DvaVILPEL~~af~~---~~~~avv~~~~e~~L~~r~gv~~~P 84 (107)
T PF07449_consen 9 HGWPRVDADTLDAFLAAPGDAV-LFFAGDPARFPETADVAVILPELVKAFPG---RFRGAVVARAAERALAARFGVRRWP 84 (107)
T ss_dssp -TEEEE-CCCHHHHHHCCSCEE-EEESS-TTTSTTCCHHHHHHHHHHCTSTT---SEEEEEEEHHHHHHHHHHHT-TSSS
T ss_pred cCCeeechhhHHHHHhCCCcEE-EEECCCCCcCcccccceeEcHHHHHhhhC---ccceEEECchhHHHHHHHhCCccCC
Confidence 3567788899999998766644 455555555444333 45555555555 6777778867778999999999999
Q ss_pred EEEEEeCCee-eEeecCCC
Q 007850 170 TIYFFVDGQH-KAYNGGRT 187 (587)
Q Consensus 170 t~~~~~~g~~-~~~~g~~~ 187 (587)
+++++++|.. -...|.++
T Consensus 85 aLvf~R~g~~lG~i~gi~d 103 (107)
T PF07449_consen 85 ALVFFRDGRYLGAIEGIRD 103 (107)
T ss_dssp EEEEEETTEEEEEEESSST
T ss_pred eEEEEECCEEEEEecCeec
Confidence 9999999954 34555544
No 326
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.90 E-value=0.0021 Score=55.62 Aligned_cols=42 Identities=17% Similarity=0.319 Sum_probs=34.7
Q ss_pred CCCcEEEEEeCCC-ChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007850 451 ESKDVLLEIYAPW-CGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (587)
Q Consensus 451 ~~~~v~v~f~~~~-C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 495 (587)
.++.++|+||+.| |++|+...|.|.++.+.+. ++.++.|+.+
T Consensus 25 ~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~---~~~vi~Is~d 67 (143)
T cd03014 25 AGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD---NTVVLTISAD 67 (143)
T ss_pred CCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC---CCEEEEEECC
Confidence 3679999999998 6999999999999999875 3566666654
No 327
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.89 E-value=0.0079 Score=52.64 Aligned_cols=128 Identities=19% Similarity=0.242 Sum_probs=91.2
Q ss_pred HHHHHhcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhcCC--CcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcE
Q 007850 410 FGEDFLEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLDES--KDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSI 487 (587)
Q Consensus 410 fi~~~~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~~~--~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~ 487 (587)
|++.|...++.-+.... ....-+.|..|++..|...|...+ -.|||..|...-+.|+-+...|+.+|.+|+. +
T Consensus 69 fLE~YR~kRl~E~r~~~--~k~kfG~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~---i 143 (240)
T KOG3170|consen 69 FLEMYRIKRLAEWRATA--EKAKFGEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ---I 143 (240)
T ss_pred HHHHHHHHHHHHHHHHH--HHhcccceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc---c
Confidence 66666555543221111 112247899999999999985543 4688899999999999999999999999987 8
Q ss_pred EEEEEeCCccccccCCCCcCcEEEEEeCCCcccC---cccccc-ccCHHHHHHHHHhhCC
Q 007850 488 VIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFD---PINVDV-DRTVVALYKFLKKNAS 543 (587)
Q Consensus 488 ~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~---~~~~~g-~~~~~~l~~~i~~~~~ 543 (587)
.|+++-... -.+.|.-...||+++|..|....+ +..+-| ..+.+++..++-+...
T Consensus 144 KFVki~at~-cIpNYPe~nlPTl~VY~~G~lk~q~igll~lgG~n~t~ed~e~~L~qaga 202 (240)
T KOG3170|consen 144 KFVKIPATT-CIPNYPESNLPTLLVYHHGALKKQMIGLLELGGMNLTMEDVEDFLVQAGA 202 (240)
T ss_pred eEEeccccc-ccCCCcccCCCeEEEeecchHHhheehhhhhcCCcCCHHHHHHHHHhccc
Confidence 888776432 336777788999999988865432 233434 4578888888877653
No 328
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.87 E-value=0.0019 Score=57.96 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=42.2
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 495 (587)
+..++++.+.-.-. .++++||.|||+||+.|+ ..+.|+++.+++++ .++.++.+.|+
T Consensus 10 ~~~~~G~~v~Ls~~-~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~-~gl~Vlg~p~n 66 (183)
T PRK10606 10 VTTIDGEVTTLEKY-AGNVLLIVNVASKCGLTP-QYEQLENIQKAWAD-QGFVVLGFPCN 66 (183)
T ss_pred eECCCCCEEeHHHh-CCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhh-CCeEEEEeecc
Confidence 34455553332222 378999999999999997 58899999999976 36888888774
No 329
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=96.87 E-value=0.0034 Score=47.96 Aligned_cols=57 Identities=14% Similarity=0.313 Sum_probs=41.2
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---HHHHHHcCCCCCcEEEEEeCCe
Q 007850 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE---NELAHEYDVQGFPTIYFFVDGQ 178 (587)
Q Consensus 111 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~~i~~~Pt~~~~~~g~ 178 (587)
+.-++.|+.+||++|++....|.+. ++.+-.+|++.+ ..+....|...+|.++ .+|.
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~~---------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~--i~g~ 66 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKEK---------GYDFEEIPLGNDARGRSLRAVTGATTVPQVF--IGGK 66 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHHc---------CCCcEEEECCCChHHHHHHHHHCCCCcCeEE--ECCE
Confidence 3447889999999999999888632 355666777655 3455556889999985 3664
No 330
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=96.87 E-value=0.0036 Score=50.31 Aligned_cols=78 Identities=18% Similarity=0.342 Sum_probs=61.4
Q ss_pred CcchhHHhh-cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCc
Q 007850 441 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 441 ~~~f~~~v~-~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~ 518 (587)
+...++.+. ...+.|+|-|...|-+.|..+...|.++++.+++...++++.+|....-.+-|.+...|++++|-+++.
T Consensus 11 ~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFfn~kH 89 (142)
T KOG3414|consen 11 GWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKH 89 (142)
T ss_pred HHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEEcCce
Confidence 344555553 356889999999999999999999999999999866677777775444456789999999998866544
No 331
>PHA03050 glutaredoxin; Provisional
Probab=96.86 E-value=0.0032 Score=51.12 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=41.6
Q ss_pred HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC-c----HHHHHHcCCCCCcEEEEEeCC
Q 007850 103 FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE-E----NELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 103 ~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~-~----~~l~~~~~i~~~Pt~~~~~~g 177 (587)
.++.+++++ ++.|..+|||+|++....|.+..-... .+..+.|+-.. . ..+.+..|.+.+|++ |.+|
T Consensus 6 v~~~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~~----~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~I--fI~g 77 (108)
T PHA03050 6 VQQRLANNK--VTIFVKFTCPFCRNALDILNKFSFKRG----AYEIVDIKEFKPENELRDYFEQITGGRTVPRI--FFGK 77 (108)
T ss_pred HHHHhccCC--EEEEECCCChHHHHHHHHHHHcCCCcC----CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEE--EECC
Confidence 345555544 778999999999999988876532111 23444444211 2 234555688899998 3445
Q ss_pred e
Q 007850 178 Q 178 (587)
Q Consensus 178 ~ 178 (587)
+
T Consensus 78 ~ 78 (108)
T PHA03050 78 T 78 (108)
T ss_pred E
Confidence 3
No 332
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=96.83 E-value=0.0038 Score=48.13 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=64.7
Q ss_pred cEEEEEEec-cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCC--CcEEEEecCCCCccccCCCCC
Q 007850 326 NQLLLFAVS-NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEA--PKVLAYTGNDDAKKHILDGEL 402 (587)
Q Consensus 326 ~~il~~~~~-~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~--~p~~~i~~~~~~~~y~~~~~~ 402 (587)
.++++|... .+-...+..+.++|...+|.-+.+||||.+.+ .+.+|+.+.+++.. .|..+-+...+..+-.|+-..
T Consensus 21 NVLvLy~ks~k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e-~kKLCKKlKv~~~~kp~~~~LkHYKdG~fHkdYdR~~ 99 (112)
T cd03067 21 NVLVLYSKSAKSAEALLKLLSDVAQAVKGQGTIAWIDCGDSE-SRKLCKKLKVDPSSKPKPVELKHYKDGDFHTEYNRQL 99 (112)
T ss_pred cEEEEEecchhhHHHHHHHHHHHHHHhcCceeEEEEecCChH-HHHHHHHHccCCCCCCCcchhhcccCCCccccccchh
Confidence 445566655 56677888999999999999999999999765 77899999998322 344444444444444567789
Q ss_pred CHHHHHHHHHH
Q 007850 403 TLDKIKTFGED 413 (587)
Q Consensus 403 t~e~i~~fi~~ 413 (587)
|..++..|+.+
T Consensus 100 t~kSmv~FlrD 110 (112)
T cd03067 100 TFKSMVAFLRD 110 (112)
T ss_pred hHHHHHHHhhC
Confidence 99999999875
No 333
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=96.79 E-value=0.014 Score=47.89 Aligned_cols=75 Identities=20% Similarity=0.356 Sum_probs=60.5
Q ss_pred hhhHHHHH--hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE-EeC
Q 007850 100 ERNFSDVI--ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF-FVD 176 (587)
Q Consensus 100 ~~~~~~~~--~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~-~~~ 176 (587)
+...++++ ...+.++|-|...|-+.|.++-..|.++++..+. -..++.||.++-+.+.+-|.+. -|..++ |-+
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~---~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~r 83 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKN---FAVIYLVDIDEVPDFNQMYELY-DPCTVMFFFR 83 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTT---TEEEEEEETTTTHCCHHHTTS--SSEEEEEEET
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhc---ceEEEEEEcccchhhhcccccC-CCeEEEEEec
Confidence 45666666 4578999999999999999999999999999877 5889999999999999999998 785444 446
Q ss_pred Ce
Q 007850 177 GQ 178 (587)
Q Consensus 177 g~ 178 (587)
++
T Consensus 84 nk 85 (133)
T PF02966_consen 84 NK 85 (133)
T ss_dssp TE
T ss_pred Ce
Confidence 63
No 334
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.79 E-value=0.013 Score=44.79 Aligned_cols=71 Identities=13% Similarity=0.152 Sum_probs=50.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHH---HHcCCCCCcEEEEEeCCeeeEeecCCCHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA---HEYDVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~---~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~ 190 (587)
++.|..+||++|++....|.+ .+|.|-.+|++++++.. +..|...+|++++ ++. ..++...+.
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~---------~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~---~~~Gf~~~~ 68 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES---------RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL---SWSGFRPDM 68 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH---------CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE---EEecCCHHH
Confidence 678899999999999888854 14778888888776533 3457789999854 342 234667788
Q ss_pred HHHHHHHh
Q 007850 191 IVTWIKKK 198 (587)
Q Consensus 191 l~~~i~~~ 198 (587)
|.+++...
T Consensus 69 l~~~~~~~ 76 (81)
T PRK10329 69 INRLHPAP 76 (81)
T ss_pred HHHHHHhh
Confidence 87776543
No 335
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=96.78 E-value=0.0051 Score=45.66 Aligned_cols=53 Identities=21% Similarity=0.407 Sum_probs=38.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHH----HHHcCCCCCcEEEEEeCC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g 177 (587)
++.|+++||++|+.....|.+.. +.+..+|...+... .+..+...+|+++ .+|
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~---------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~ 58 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG---------IEFEEIDILEDGELREELKELSGWPTVPQIF--ING 58 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECC
Confidence 57889999999999999887642 55667777766543 3345777888773 455
No 336
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.78 E-value=0.0023 Score=55.81 Aligned_cols=44 Identities=9% Similarity=0.118 Sum_probs=34.3
Q ss_pred CCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc
Q 007850 452 SKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (587)
Q Consensus 452 ~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 496 (587)
.+.++|.|| ++||+.|....|.+.++.+.++. .++.++.|..+.
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~v~vi~vs~d~ 72 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEA-AGAEVLGISVDS 72 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHh-CCCEEEEecCCC
Confidence 377777777 89999999999999999999875 345566665443
No 337
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.77 E-value=0.0071 Score=54.64 Aligned_cols=89 Identities=11% Similarity=0.111 Sum_probs=58.3
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc---------------------------ccccC
Q 007850 451 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN---------------------------EHHRA 502 (587)
Q Consensus 451 ~~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~---------------------------~~~~~ 502 (587)
.+++++|+|| +.||+.|....+.|.++..++... ++.++.|..+.. .+..|
T Consensus 30 ~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~-g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~y 108 (187)
T PRK10382 30 EGRWSVFFFYPADFTFVCPTELGDVADHYEELQKL-GVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNF 108 (187)
T ss_pred CCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhC-CCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHc
Confidence 3568999999 999999999999999999998653 344444443321 11335
Q ss_pred CC----CcC--cEEEEEeCCCcccCccccc--cccCHHHHHHHHHh
Q 007850 503 KS----DGF--PTILFFPAGNKSFDPINVD--VDRTVVALYKFLKK 540 (587)
Q Consensus 503 ~i----~~~--Pt~~~~~~~~~~~~~~~~~--g~~~~~~l~~~i~~ 540 (587)
++ .++ |+.++...++.+.....+. ..++.+++++.|+.
T Consensus 109 gv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~a 154 (187)
T PRK10382 109 DNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKA 154 (187)
T ss_pred CCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence 55 245 8888885444431121221 24689999998865
No 338
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=96.76 E-value=0.0039 Score=46.63 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=46.8
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHc---CCCCCcEEEEEeCCeeeEeecCCCHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEY---DVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~---~i~~~Pt~~~~~~g~~~~~~g~~~~~~ 190 (587)
+..|..++|++|+.....|.+. ++.+-.+|+++++.....+ |..++|++++ +|. .+.|+.+.+.
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~--~~~~G~~~~~ 67 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH---------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGD--LSWSGFRPDK 67 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCC--cEEeccCHHH
Confidence 3578899999999999888641 4777778888776555444 8889999744 342 2445566666
Q ss_pred HHH
Q 007850 191 IVT 193 (587)
Q Consensus 191 l~~ 193 (587)
|.+
T Consensus 68 ~~~ 70 (72)
T TIGR02194 68 LKA 70 (72)
T ss_pred HHh
Confidence 654
No 339
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=96.71 E-value=0.0037 Score=47.75 Aligned_cols=54 Identities=15% Similarity=0.391 Sum_probs=37.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHH----HHHcCCCCCcEEEEEeCCe
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVDGQ 178 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~g~ 178 (587)
++.|+.+||++|+.....|.+. ++.+-.+|++.++.. .+..+..++|++ +.+|.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~---------~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i--~i~g~ 58 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK---------GVTFTEIRVDGDPALRDEMMQRSGRRTVPQI--FIGDV 58 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc---------CCCcEEEEecCCHHHHHHHHHHhCCCCcCEE--EECCE
Confidence 4678999999999999988752 245555666666544 334478899997 44553
No 340
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.70 E-value=0.012 Score=62.97 Aligned_cols=99 Identities=13% Similarity=0.251 Sum_probs=75.5
Q ss_pred EEcChhhHHHHHhC-CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEE
Q 007850 96 VVLKERNFSDVIEN-NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFF 174 (587)
Q Consensus 96 ~~l~~~~~~~~~~~-~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 174 (587)
..|+++..+.+-.- ++..+-.|.++.||+|......+.+++.... +|..-.+|....+++..+|+|.++|++++
T Consensus 102 ~~l~~~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p----~i~~~~id~~~~~~~~~~~~v~~VP~~~i- 176 (515)
T TIGR03140 102 PKLDEGIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNP----NISHTMIDGALFQDEVEALGIQGVPAVFL- 176 (515)
T ss_pred CCCCHHHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC----CceEEEEEchhCHHHHHhcCCcccCEEEE-
Confidence 34445555544432 4456889999999999988888888876633 58888999999999999999999999975
Q ss_pred eCCeeeEeecCCCHHHHHHHHHHhcCC
Q 007850 175 VDGQHKAYNGGRTKDAIVTWIKKKIGP 201 (587)
Q Consensus 175 ~~g~~~~~~g~~~~~~l~~~i~~~~~~ 201 (587)
+|. ..+.|..+.+.+.+.+.....+
T Consensus 177 -~~~-~~~~g~~~~~~~~~~l~~~~~~ 201 (515)
T TIGR03140 177 -NGE-EFHNGRMDLAELLEKLEETAGV 201 (515)
T ss_pred -CCc-EEEecCCCHHHHHHHHhhccCc
Confidence 553 3477888888887777665433
No 341
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=96.69 E-value=0.022 Score=52.72 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=26.0
Q ss_pred CCeEEEEEECCCChhhhhhhHHH---HHHHHHhhh
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEY---AAAATELKS 141 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~ 141 (587)
+++.+|.|+.-.||||..+.+.+ ..+.+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 45679999999999999999876 666766654
No 342
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=96.67 E-value=0.007 Score=46.39 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=59.9
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC---eeeEeecCCCHH
Q 007850 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG---QHKAYNGGRTKD 189 (587)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g---~~~~~~g~~~~~ 189 (587)
.++.|..+.|+-|......+..+.... ++.+-.||+++++.+..+|+. .+|.+.+-..+ ......+..+.+
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~-----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~~~~~~~~~~d~~ 74 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEF-----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFKEQEELKWRFDEE 74 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTS-----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGCTSEEEESSB-HH
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhc-----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCcccccccceeCCCCCHH
Confidence 378899999999999999988765432 589999999999999999996 69996554311 245667888999
Q ss_pred HHHHHHH
Q 007850 190 AIVTWIK 196 (587)
Q Consensus 190 ~l~~~i~ 196 (587)
.|.+|++
T Consensus 75 ~L~~~L~ 81 (81)
T PF05768_consen 75 QLRAWLE 81 (81)
T ss_dssp HHHHHHH
T ss_pred HHHHHhC
Confidence 9999875
No 343
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=96.60 E-value=0.0032 Score=48.47 Aligned_cols=55 Identities=13% Similarity=0.316 Sum_probs=39.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-----ccCCCCcCcEEEEEeCCCc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~-----~~~~i~~~Pt~~~~~~~~~ 518 (587)
+++|+++||++|+.+.+.|.++.. .+.++.++...+. . ...+..++|++ |-+|..
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~------~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v--~~~g~~ 63 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV------KPAVVELDQHEDGSEIQDYLQELTGQRTVPNV--FIGGKF 63 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC------CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeE--EECCEE
Confidence 578999999999999999998754 3556677765442 1 22467899996 445543
No 344
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.59 E-value=0.013 Score=52.83 Aligned_cols=33 Identities=27% Similarity=0.498 Sum_probs=29.5
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhh
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKS 141 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (587)
.+++.++.|+...||+|+.+.+.+..+.+++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 467899999999999999999999999888744
No 345
>PRK13190 putative peroxiredoxin; Provisional
Probab=96.58 E-value=0.008 Score=55.29 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=57.8
Q ss_pred CCcEEE-EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc-----------------------------cccc
Q 007850 452 SKDVLL-EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN-----------------------------EHHR 501 (587)
Q Consensus 452 ~~~v~v-~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-----------------------------~~~~ 501 (587)
++.++| +||+.||+.|....+.|.++...++.. ++.++.+.++.. ....
T Consensus 27 gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~-~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~ 105 (202)
T PRK13190 27 GKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKL-GVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELARE 105 (202)
T ss_pred CCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHH
Confidence 555554 689999999999999999999998753 344444433321 0123
Q ss_pred CCCC------cCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHhh
Q 007850 502 AKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKN 541 (587)
Q Consensus 502 ~~i~------~~Pt~~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~~ 541 (587)
|++. .+|+++++..++++.....+ .+.++.+++++.|+..
T Consensus 106 ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 106 YNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred cCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 4552 47999998655554111112 3367999999998764
No 346
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.54 E-value=0.0043 Score=53.44 Aligned_cols=45 Identities=16% Similarity=0.210 Sum_probs=36.2
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc
Q 007850 451 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT 496 (587)
Q Consensus 451 ~~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 496 (587)
.+++++|+|| +.||+.|....|.+.++..+++. .++.++.|..+.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~-~~~~~i~is~d~ 66 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAK-GGAEVLGVSVDS 66 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence 5789999999 78999999999999999999854 346666665543
No 347
>PRK15000 peroxidase; Provisional
Probab=96.53 E-value=0.01 Score=54.41 Aligned_cols=89 Identities=7% Similarity=0.112 Sum_probs=59.7
Q ss_pred CCCcEEEEEeCC-CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------------------------------c
Q 007850 451 ESKDVLLEIYAP-WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------------------------------H 499 (587)
Q Consensus 451 ~~~~v~v~f~~~-~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------------------------------~ 499 (587)
.++.++|+||+. ||+.|....+.|.++.+++... ++.++.+.++... +
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~-g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia 111 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKR-GVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQ 111 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHH
Confidence 478999999995 9999999999999999999753 3445555444211 0
Q ss_pred ccCCCC------cCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHh
Q 007850 500 HRAKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKK 540 (587)
Q Consensus 500 ~~~~i~------~~Pt~~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~ 540 (587)
..|++. .+|+.+++...+.+.....+ .-.++.+++++.|+.
T Consensus 112 ~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~a 160 (200)
T PRK15000 112 KAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA 160 (200)
T ss_pred HHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 124554 58888888644443121112 125788999998875
No 348
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=96.52 E-value=0.0089 Score=45.03 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=37.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHH----HHcCCC-CCcEEEEEeCC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELA----HEYDVQ-GFPTIYFFVDG 177 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~----~~~~i~-~~Pt~~~~~~g 177 (587)
++.|+.+||++|......|.+. ++.+-.+|++.+++.. +..+.. ++|++ +.+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~---------~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v--~i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK---------GVDYEEIDVDGDPALREEMINRSGGRRTVPQI--FIGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCccCEE--EECC
Confidence 5789999999999998888652 3666667777665443 335666 89977 3455
No 349
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.50 E-value=0.0058 Score=52.96 Aligned_cols=75 Identities=24% Similarity=0.529 Sum_probs=45.8
Q ss_pred cchhHHhhcCCCcEEEEEeCCCChhhhhhhH-HH--HHHHHHhcCCCcEEEEEEeCCcccc--ccC--------CCCcCc
Q 007850 442 NNFDEIVLDESKDVLLEIYAPWCGHCQAFEP-TY--NKLAKHLRGVDSIVIAKMDGTTNEH--HRA--------KSDGFP 508 (587)
Q Consensus 442 ~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~-~~--~~~~~~~~~~~~~~~~~id~~~~~~--~~~--------~i~~~P 508 (587)
+.|... ...+|+++|.++++||..|+.|.. .| .++++.+.. .++-+.+|.+.... ..| +..++|
T Consensus 28 ea~~~A-k~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~--~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 28 EALEKA-KKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR--NFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHH-HHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH--H-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHH-HhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC--CEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 345443 567899999999999999998885 44 346666654 58888999877442 222 567999
Q ss_pred EEEEE-eCCCcc
Q 007850 509 TILFF-PAGNKS 519 (587)
Q Consensus 509 t~~~~-~~~~~~ 519 (587)
+.+|. +.|+..
T Consensus 105 l~vfltPdg~p~ 116 (163)
T PF03190_consen 105 LTVFLTPDGKPF 116 (163)
T ss_dssp EEEEE-TTS-EE
T ss_pred ceEEECCCCCee
Confidence 98887 566543
No 350
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=96.46 E-value=0.015 Score=46.23 Aligned_cols=64 Identities=25% Similarity=0.406 Sum_probs=41.3
Q ss_pred hHHHHHhCCCeEEEEEE----CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHH----HHHcCCCCCcEEEE
Q 007850 102 NFSDVIENNKFVMVEFY----APWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYF 173 (587)
Q Consensus 102 ~~~~~~~~~~~~~v~f~----a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~ 173 (587)
-.+.++++++ ++|+-. ++|||+|++....|.+. ++.+..+|..+++.. .+..|-..+|.++
T Consensus 4 ~v~~~i~~~~-Vvvf~kg~~~~~~Cp~C~~ak~lL~~~---------~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vf- 72 (97)
T TIGR00365 4 RIKEQIKENP-VVLYMKGTPQFPQCGFSARAVQILKAC---------GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLY- 72 (97)
T ss_pred HHHHHhccCC-EEEEEccCCCCCCCchHHHHHHHHHHc---------CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEE-
Confidence 3455666654 444433 38999999998888663 355667787666543 3345677899874
Q ss_pred EeCC
Q 007850 174 FVDG 177 (587)
Q Consensus 174 ~~~g 177 (587)
.+|
T Consensus 73 -i~g 75 (97)
T TIGR00365 73 -VKG 75 (97)
T ss_pred -ECC
Confidence 445
No 351
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.46 E-value=0.011 Score=55.54 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC------------------------------------
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG------------------------------------ 494 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~------------------------------------ 494 (587)
+++.+++.|..+.|++|+++.+.+.++.+. + ..+.+..+..
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~-v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~ 182 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--G-ITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPA 182 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--C-eEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcc
Confidence 457789999999999999999998887541 1 1222221111
Q ss_pred --Cc------cccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHhh
Q 007850 495 --TT------NEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKKN 541 (587)
Q Consensus 495 --~~------~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~~ 541 (587)
.. ..+.+++|+++|+++ +++|.. ..|..+.+.|.++|.++
T Consensus 183 ~c~~~v~~~~~la~~lgi~gTPtiv-~~~G~~------~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 183 SCDVDIADHYALGVQFGVQGTPAIV-LSNGTL------VPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cccchHHHhHHHHHHcCCccccEEE-EcCCeE------eeCCCCHHHHHHHHHHc
Confidence 00 001346899999998 667754 46888999999999864
No 352
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=96.44 E-value=0.007 Score=48.41 Aligned_cols=53 Identities=23% Similarity=0.321 Sum_probs=34.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH---H----HHHHcCCCCCcEEEEEeCC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---E----LAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~----l~~~~~i~~~Pt~~~~~~g 177 (587)
++.|..+|||+|++....|.+. ++.+..+|++..+ + +.+..|...+|.+ |.+|
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~---------~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g 69 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL---------GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGG 69 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECC
Confidence 6778999999999998877653 2333445554432 2 3333467899997 4455
No 353
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.39 E-value=0.0028 Score=56.94 Aligned_cols=75 Identities=16% Similarity=0.304 Sum_probs=61.6
Q ss_pred cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--ccccCCCCcCcEEEEEeCCCcccCcccccc
Q 007850 450 DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EHHRAKSDGFPTILFFPAGNKSFDPINVDV 527 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g 527 (587)
...+..++.||++||..|+.+..++..+++..+ ++.+++.+.+.. .+..+.+..+|+++++..|.++. +..|
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~---~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~~~~~v~---~l~~ 88 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFK---NAQFLKLEAEEFPEISNLIAVEAVPYFVFFFLGEKVD---RLSG 88 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhhh---hheeeeehhhhhhHHHHHHHHhcCceeeeeecchhhh---hhhc
Confidence 367889999999999999999999999999984 477777777654 35788999999999998888875 5666
Q ss_pred ccC
Q 007850 528 DRT 530 (587)
Q Consensus 528 ~~~ 530 (587)
...
T Consensus 89 ~~~ 91 (227)
T KOG0911|consen 89 ADP 91 (227)
T ss_pred cCc
Confidence 443
No 354
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.38 E-value=0.013 Score=43.97 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=37.5
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHH----HHHHcCCCCCcEE
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTI 171 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~ 171 (587)
++.|..+||++|++....|++. ++.+-.+|+..++. +.+..+-..+|++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~---------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v 55 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK---------GLPYVEINIDIFPERKAELEERTGSSVVPQI 55 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC---------CCceEEEECCCCHHHHHHHHHHhCCCCcCEE
Confidence 6788999999999998888751 46677778877654 4455577889998
No 355
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=96.27 E-value=0.013 Score=51.92 Aligned_cols=106 Identities=21% Similarity=0.280 Sum_probs=82.0
Q ss_pred ceEEE-cCcchhHHhhcC--CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-ccCCCCcCcEE
Q 007850 435 DVKIV-VGNNFDEIVLDE--SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-HRAKSDGFPTI 510 (587)
Q Consensus 435 ~~~~l-~~~~f~~~v~~~--~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~~~~i~~~Pt~ 510 (587)
.|..+ +++.|-+.|-.. ...++|..|-+.-..|-.+...+.-||..++. +.|.++-.+.-.+ .+|....+|++
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~---vKFckikss~~gas~~F~~n~lP~L 215 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI---VKFCKIKSSNTGASDRFSLNVLPTL 215 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc---eeEEEeeeccccchhhhcccCCceE
Confidence 45544 577899988333 23578889999999999999999999999876 8898887765444 68899999999
Q ss_pred EEEeCCCcccCcccccc----ccCHHHHHHHHHhhCC
Q 007850 511 LFFPAGNKSFDPINVDV----DRTVVALYKFLKKNAS 543 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~g----~~~~~~l~~~i~~~~~ 543 (587)
++|++|..+.+.+.... ......+..||+...-
T Consensus 216 liYkgGeLIgNFv~va~qlgedffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 216 LIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEYGL 252 (273)
T ss_pred EEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHcCC
Confidence 99999998875544442 4456788899988653
No 356
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.18 E-value=0.0069 Score=43.34 Aligned_cols=49 Identities=12% Similarity=0.282 Sum_probs=34.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc--cc---cc-CCCCcCcEEEE
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN--EH---HR-AKSDGFPTILF 512 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~---~~-~~i~~~Pt~~~ 512 (587)
+++|+.+||++|+.++..|++. ++.+-.+|.+.. .. .. .+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~--------~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK--------GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT--------TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc--------CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5789999999999999988542 244455555444 22 22 28899999876
No 357
>PRK13599 putative peroxiredoxin; Provisional
Probab=96.10 E-value=0.024 Score=52.55 Aligned_cols=88 Identities=13% Similarity=0.098 Sum_probs=58.0
Q ss_pred CCc-EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------------------ccc
Q 007850 452 SKD-VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------------HHR 501 (587)
Q Consensus 452 ~~~-v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----------------------------~~~ 501 (587)
++. +|+.|++.||+.|....+.|.++..++... ++.++.+.++... +..
T Consensus 28 Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~-gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 28 GKWFVLFSHPADFTPVCTTEFVEFARKANDFKEL-NTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 445 567999999999999999999999998653 3444444444310 122
Q ss_pred CCC-------CcCcEEEEEeCCCcccCccccc--cccCHHHHHHHHHh
Q 007850 502 AKS-------DGFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKK 540 (587)
Q Consensus 502 ~~i-------~~~Pt~~~~~~~~~~~~~~~~~--g~~~~~~l~~~i~~ 540 (587)
|++ ..+|+++++...+++.....|. ..++.++|++.|+.
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 444 2579999986544441222222 24688999999875
No 358
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=96.10 E-value=0.02 Score=42.69 Aligned_cols=66 Identities=17% Similarity=0.365 Sum_probs=44.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH---HHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN---ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDA 190 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~---~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~ 190 (587)
++.|..+||++|.+....|.+. ++.+..+|++.+. .+....|...+|.+ +.+|.. .| ..++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~---------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~i--fi~g~~---ig--g~~~ 66 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN---------GISYEEIPLGKDITGRSLRAVTGAMTVPQV--FIDGEL---IG--GSDD 66 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc---------CCCcEEEECCCChhHHHHHHHhCCCCcCeE--EECCEE---Ee--CHHH
Confidence 6789999999999998777641 3556666666554 23334588899997 455642 23 2566
Q ss_pred HHHHH
Q 007850 191 IVTWI 195 (587)
Q Consensus 191 l~~~i 195 (587)
|.+|+
T Consensus 67 l~~~l 71 (72)
T cd03029 67 LEKYF 71 (72)
T ss_pred HHHHh
Confidence 66664
No 359
>PRK10329 glutaredoxin-like protein; Provisional
Probab=96.04 E-value=0.031 Score=42.72 Aligned_cols=70 Identities=6% Similarity=0.022 Sum_probs=46.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c---ccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H---HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 530 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~---~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~ 530 (587)
+..|..+||++|+..+..|.+. ++.|-.+|++.+. . ...+...+|++++ ++. ... ...
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~~--------gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~------~~~-Gf~ 65 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMESR--------GFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL------SWS-GFR 65 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE------EEe-cCC
Confidence 6689999999999999988652 2445555554433 2 2346679999875 332 233 367
Q ss_pred HHHHHHHHHhhC
Q 007850 531 VVALYKFLKKNA 542 (587)
Q Consensus 531 ~~~l~~~i~~~~ 542 (587)
.+.|.+++..+.
T Consensus 66 ~~~l~~~~~~~~ 77 (81)
T PRK10329 66 PDMINRLHPAPH 77 (81)
T ss_pred HHHHHHHHHhhh
Confidence 888888887653
No 360
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.04 E-value=0.13 Score=41.41 Aligned_cols=93 Identities=9% Similarity=0.251 Sum_probs=68.6
Q ss_pred EEc-ChhhHHHHHh-CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEE
Q 007850 96 VVL-KERNFSDVIE-NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 96 ~~l-~~~~~~~~~~-~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~ 173 (587)
..+ +...++.++. ....++|-|+..--. .....|.++|..+.+ .+.|+... +..+...+++. .|++++
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHP---YIKFFATF---DSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhc---CCEEEEEC---cHHHHHHcCCC-CCcEEE
Confidence 344 4556888888 788888888876444 356678999998866 57776554 34667777765 799999
Q ss_pred EeC-C-eeeEe-ecCCCHHHHHHHHHHh
Q 007850 174 FVD-G-QHKAY-NGGRTKDAIVTWIKKK 198 (587)
Q Consensus 174 ~~~-g-~~~~~-~g~~~~~~l~~~i~~~ 198 (587)
+++ . ....| .|..+.+.|.+||...
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 975 3 55678 7888999999999753
No 361
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.03 E-value=0.018 Score=52.84 Aligned_cols=26 Identities=23% Similarity=0.438 Sum_probs=23.3
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHH
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNK 476 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~ 476 (587)
+.+..++.|+.+.|++|+++.+.+.+
T Consensus 76 ~~~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 76 NGKRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHhh
Confidence 36789999999999999999999876
No 362
>PHA03050 glutaredoxin; Provisional
Probab=96.00 E-value=0.0089 Score=48.53 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=38.4
Q ss_pred EEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------c-ccCCCCcCcEEEEEeCCCcc
Q 007850 455 VLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------H-HRAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 455 v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~-~~~~i~~~Pt~~~~~~~~~~ 519 (587)
-++.|..+|||+|++....|.+..-... .+..+.+|..... . ..-+..++|++++ +|+.+
T Consensus 14 ~V~vys~~~CPyC~~ak~~L~~~~i~~~---~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~~i 80 (108)
T PHA03050 14 KVTIFVKFTCPFCRNALDILNKFSFKRG---AYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKTSI 80 (108)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCCcC---CcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCEEE
Confidence 3677999999999999999987643222 3555556542211 1 2236679999854 55544
No 363
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.99 E-value=0.096 Score=42.34 Aligned_cols=89 Identities=19% Similarity=0.356 Sum_probs=66.4
Q ss_pred ChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC--
Q 007850 99 KERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD-- 176 (587)
Q Consensus 99 ~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~-- 176 (587)
+..+++..+...+.++|-|+..--. .+...|.++|..+.+ .+.|+... +..+...+++ .|++++|+.
T Consensus 7 s~~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~---d~~F~~~~---~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 7 TEAEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRE---SFRFAHTS---DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred CHHHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhh---cCEEEEEC---hHHHHHhcCC--CCceEEEechh
Confidence 3456777777788889988876443 467788999999866 57786654 3567788888 688888832
Q ss_pred ------CeeeEeecCCCHHHHHHHHHHh
Q 007850 177 ------GQHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 177 ------g~~~~~~g~~~~~~l~~~i~~~ 198 (587)
-....|.|..+.+.|.+||...
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 2445699999999999999754
No 364
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=95.96 E-value=0.032 Score=48.97 Aligned_cols=84 Identities=18% Similarity=0.339 Sum_probs=64.7
Q ss_pred CCeEEcChhhHHHHH---hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCc
Q 007850 93 KDVVVLKERNFSDVI---ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (587)
Q Consensus 93 ~~v~~l~~~~~~~~~---~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (587)
+.|..+++..|-+-+ .++-+|+|..|...-+-|.-+...|+.++.+|.. +.|+.+-.+.. ...|--...|
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~----iKFVki~at~c---IpNYPe~nlP 163 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQ----IKFVKIPATTC---IPNYPESNLP 163 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCc----ceEEecccccc---cCCCcccCCC
Confidence 568899999888644 3467899999999999999999999999999977 77877743321 1235556789
Q ss_pred EEEEEeCC-eeeEee
Q 007850 170 TIYFFVDG-QHKAYN 183 (587)
Q Consensus 170 t~~~~~~g-~~~~~~ 183 (587)
|+++|..| ....+.
T Consensus 164 Tl~VY~~G~lk~q~i 178 (240)
T KOG3170|consen 164 TLLVYHHGALKKQMI 178 (240)
T ss_pred eEEEeecchHHhhee
Confidence 99999988 444444
No 365
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=95.88 E-value=0.042 Score=52.18 Aligned_cols=89 Identities=8% Similarity=0.037 Sum_probs=56.9
Q ss_pred CCCcEEEEEe-CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcc------------------------------cc
Q 007850 451 ESKDVLLEIY-APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTN------------------------------EH 499 (587)
Q Consensus 451 ~~~~v~v~f~-~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~------------------------------~~ 499 (587)
.++.++++|| +.||+.|....+.|.++..++... ++.++.|..+.. .+
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~-gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~ia 175 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEER-GVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVS 175 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHH
Confidence 3566777776 899999999999999999998753 233333333321 01
Q ss_pred ccCCCC-----cCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHh
Q 007850 500 HRAKSD-----GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKK 540 (587)
Q Consensus 500 ~~~~i~-----~~Pt~~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~ 540 (587)
..|++. ..|+.+++...+.+.....+ ...++.+++++.|..
T Consensus 176 kayGv~~~~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 176 KSFGLLRDEGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred HHcCCCCcCCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 234553 47988888644443122212 235789999988864
No 366
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.86 E-value=0.026 Score=44.69 Aligned_cols=59 Identities=25% Similarity=0.362 Sum_probs=42.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe--CCCc------------------------------HHHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD--ATEE------------------------------NELAH 161 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd--~~~~------------------------------~~l~~ 161 (587)
++.|+.++|++|..+.+.+.++.....+ ++.+..+. .... ..+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG---GVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALAR 77 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC---cEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence 4679999999999999999998744433 45444433 2221 24566
Q ss_pred HcCCCCCcEEEEEe
Q 007850 162 EYDVQGFPTIYFFV 175 (587)
Q Consensus 162 ~~~i~~~Pt~~~~~ 175 (587)
.+|+.++|++++..
T Consensus 78 ~~g~~g~Pt~v~~~ 91 (98)
T cd02972 78 ALGVTGTPTFVVNG 91 (98)
T ss_pred HcCCCCCCEEEECC
Confidence 78999999998764
No 367
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.82 E-value=0.015 Score=43.12 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=35.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cc----cCCCCcCcEEEEEeCCCc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HH----RAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~----~~~i~~~Pt~~~~~~~~~ 518 (587)
++.|+++||++|+.+++.|.+.. +.+..+|...+. .. ..+...+|+++ .+|+.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~--------i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~--~~~~~ 60 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG--------IEFEEIDILEDGELREELKELSGWPTVPQIF--INGEF 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC--------CcEEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECCEE
Confidence 56899999999999999998764 334455554433 22 23557888774 35544
No 368
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=95.73 E-value=0.036 Score=43.48 Aligned_cols=62 Identities=23% Similarity=0.446 Sum_probs=39.1
Q ss_pred HHHhCCCeEEEEEEC----CCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHH----HHHcCCCCCcEEEEEeC
Q 007850 105 DVIENNKFVMVEFYA----PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDVQGFPTIYFFVD 176 (587)
Q Consensus 105 ~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i~~~Pt~~~~~~ 176 (587)
+.++++ +++|.-.. +||++|+.....|.+. ++.+..+|+..++++ .+..|-..+|.+ |.+
T Consensus 3 ~~i~~~-~vvvf~k~~~~~~~Cp~C~~ak~~L~~~---------~i~y~~idv~~~~~~~~~l~~~~g~~tvP~v--fi~ 70 (90)
T cd03028 3 KLIKEN-PVVLFMKGTPEEPRCGFSRKVVQILNQL---------GVDFGTFDILEDEEVRQGLKEYSNWPTFPQL--YVN 70 (90)
T ss_pred hhhccC-CEEEEEcCCCCCCCCcHHHHHHHHHHHc---------CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEE--EEC
Confidence 345454 44443332 7999999998887653 255666676666543 344577899997 445
Q ss_pred Ce
Q 007850 177 GQ 178 (587)
Q Consensus 177 g~ 178 (587)
|.
T Consensus 71 g~ 72 (90)
T cd03028 71 GE 72 (90)
T ss_pred CE
Confidence 64
No 369
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.70 E-value=0.019 Score=43.79 Aligned_cols=57 Identities=11% Similarity=0.250 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----ccCCCCcCcEEEEEeCCCc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----HRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----~~~~i~~~Pt~~~~~~~~~ 518 (587)
+..-+++|+.+||++|++.+..|.+. ++.+-.+|++.+.. ...+...+|.+++ +|+.
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~--------gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 67 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK--------GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGKL 67 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc--------CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCEE
Confidence 44557789999999999999999753 23344455544321 2236789999854 5543
No 370
>PRK13189 peroxiredoxin; Provisional
Probab=95.68 E-value=0.041 Score=51.37 Aligned_cols=89 Identities=11% Similarity=0.085 Sum_probs=56.0
Q ss_pred CC-cEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-----------------------------ccc
Q 007850 452 SK-DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-----------------------------HHR 501 (587)
Q Consensus 452 ~~-~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-----------------------------~~~ 501 (587)
++ .+|++|++.||+.|....+.|.++...++.. ++.++.+.++... ...
T Consensus 35 Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~-~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 35 GKWFVLFSHPADFTPVCTTEFVAFQKRYDEFREL-NTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHc-CCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 55 4556788999999999999999999998753 3334444333210 122
Q ss_pred CCCC-------cCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHhh
Q 007850 502 AKSD-------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKN 541 (587)
Q Consensus 502 ~~i~-------~~Pt~~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~~ 541 (587)
|++. .+|+.+++...+.+.....+ ...++.+++++.|...
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 162 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKAL 162 (222)
T ss_pred hCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 4433 46888888644444112122 2357889999988753
No 371
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=95.67 E-value=0.01 Score=56.06 Aligned_cols=88 Identities=20% Similarity=0.425 Sum_probs=72.2
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe-CCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCH
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD-ATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd-~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (587)
..++-+.||++|||..+...|.|.-....+.. +....|+ .-..+....+|++.+.|++.+...--...|.|.++.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~----i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t~~~~~~~~r~l 151 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS----IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQTCPASYRGERDL 151 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc----cccccHHHHhhcccchhccccccCCcceeeccccchhhcccccH
Confidence 67899999999999999999999988877753 3333333 222356788999999999999988888999999999
Q ss_pred HHHHHHHHHhcCC
Q 007850 189 DAIVTWIKKKIGP 201 (587)
Q Consensus 189 ~~l~~~i~~~~~~ 201 (587)
..|.+|....++-
T Consensus 152 ~sLv~fy~~i~~~ 164 (319)
T KOG2640|consen 152 ASLVNFYTEITPM 164 (319)
T ss_pred HHHHHHHHhhccc
Confidence 9999999888753
No 372
>PRK10638 glutaredoxin 3; Provisional
Probab=95.66 E-value=0.036 Score=42.70 Aligned_cols=53 Identities=11% Similarity=0.297 Sum_probs=37.7
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHH----HHHHcCCCCCcEEEEEeCC
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE----LAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~----l~~~~~i~~~Pt~~~~~~g 177 (587)
++.|..+||++|++....|.+. ++.+..+|++.++. +.+..+...+|+++ .+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~---------gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~--~~g 60 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK---------GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIF--IDA 60 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc---------CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEE--ECC
Confidence 6678899999999998888752 35566677766643 34445778899873 355
No 373
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.65 E-value=0.036 Score=42.27 Aligned_cols=51 Identities=16% Similarity=0.363 Sum_probs=35.4
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-----HHHHHc-CCCCCcEEEE
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-----ELAHEY-DVQGFPTIYF 173 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-----~l~~~~-~i~~~Pt~~~ 173 (587)
++.|..+|||+|++....|.+. ++.+..+|.+... +..++. |.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~---------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK---------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc---------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 6778899999999998777721 3556666555543 334444 7899999754
No 374
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.12 Score=44.62 Aligned_cols=88 Identities=20% Similarity=0.314 Sum_probs=61.4
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC---------------------CcHHHHHHcCCC
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT---------------------EENELAHEYDVQ 166 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~---------------------~~~~l~~~~~i~ 166 (587)
.|+++|++|| ..|+|-|-.++-.|.....++...+ +.+++|..+ .+..+++.||+.
T Consensus 29 ~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~--a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~ygv~ 106 (157)
T COG1225 29 RGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLG--AVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYGVW 106 (157)
T ss_pred cCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCC--CEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhCcc
Confidence 6788888888 4599999999999999999998854 666666543 344778888873
Q ss_pred ------------CCcEEEEEe-CC-eeeEeecC---CCHHHHHHHHHHh
Q 007850 167 ------------GFPTIYFFV-DG-QHKAYNGG---RTKDAIVTWIKKK 198 (587)
Q Consensus 167 ------------~~Pt~~~~~-~g-~~~~~~g~---~~~~~l~~~i~~~ 198 (587)
..++++++. +| ....+... -..+++.+++++.
T Consensus 107 ~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 107 GEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccccCccccccccceEEEECCCCeEEEEecCCCCcccHHHHHHHHHHh
Confidence 356788886 67 33444332 2345666666543
No 375
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=95.55 E-value=0.014 Score=44.66 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=52.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cccCCCCcCcEEEEEeCCCcccCccccccccCHHH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVA 533 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~ 533 (587)
+++|..+.|+-|..+...+..+.... .+.+-.+|+..+. ..+|+. .+|.+.+=..+... ......+..+.+.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~----~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~~~~~~~~-~~~~~~~~~d~~~ 75 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF----PFELEEVDIDEDPELFEKYGY-RIPVLHIDGIRQFK-EQEELKWRFDEEQ 75 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS----TCEEEEEETTTTHHHHHHSCT-STSEEEETT-GGGC-TSEEEESSB-HHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc----CceEEEEECCCCHHHHHHhcC-CCCEEEEcCccccc-ccceeCCCCCHHH
Confidence 68899999999999999988865443 3556666666544 467885 69997652211111 1235667889999
Q ss_pred HHHHHH
Q 007850 534 LYKFLK 539 (587)
Q Consensus 534 l~~~i~ 539 (587)
|.+||+
T Consensus 76 L~~~L~ 81 (81)
T PF05768_consen 76 LRAWLE 81 (81)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
No 376
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=95.47 E-value=0.12 Score=47.56 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCeEEcChhh---HHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhh
Q 007850 84 EYKEPEIDDKDVVVLKERN---FSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKS 141 (587)
Q Consensus 84 ~~~~~~~~~~~v~~l~~~~---~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (587)
........+..|+.+++++ +-+..+.++|.+|+|.+-.||+-..-.+.|.++++++.+
T Consensus 73 a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d 133 (237)
T PF00837_consen 73 AKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSD 133 (237)
T ss_pred eeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhh
Confidence 3344455667799999988 335557889999999999999999999999999999987
No 377
>PRK10824 glutaredoxin-4; Provisional
Probab=95.42 E-value=0.054 Score=44.27 Aligned_cols=63 Identities=19% Similarity=0.374 Sum_probs=38.1
Q ss_pred hhHHHHHhCCCeEEEEEEC----CCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHH----cCCCCCcEEE
Q 007850 101 RNFSDVIENNKFVMVEFYA----PWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHE----YDVQGFPTIY 172 (587)
Q Consensus 101 ~~~~~~~~~~~~~~v~f~a----~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~----~~i~~~Pt~~ 172 (587)
+-.++++++++ ++|.-.. ||||+|++....|.... +.+..+|..+++++... -|-+.+|.++
T Consensus 6 ~~v~~~I~~~~-Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~---------i~~~~idi~~d~~~~~~l~~~sg~~TVPQIF 75 (115)
T PRK10824 6 EKIQRQIAENP-ILLYMKGSPKLPSCGFSAQAVQALSACG---------ERFAYVDILQNPDIRAELPKYANWPTFPQLW 75 (115)
T ss_pred HHHHHHHhcCC-EEEEECCCCCCCCCchHHHHHHHHHHcC---------CCceEEEecCCHHHHHHHHHHhCCCCCCeEE
Confidence 34556676654 3443333 59999999988887642 33344555555544333 3667888864
Q ss_pred E
Q 007850 173 F 173 (587)
Q Consensus 173 ~ 173 (587)
+
T Consensus 76 I 76 (115)
T PRK10824 76 V 76 (115)
T ss_pred E
Confidence 4
No 378
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=95.36 E-value=0.027 Score=42.05 Aligned_cols=65 Identities=11% Similarity=0.107 Sum_probs=40.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c---ccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H---HRAKSDGFPTILFFPAGNKSFDPINVDVDRT 530 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~---~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~ 530 (587)
+.+|..++|++|+..+..|.+. ++.+-.+|+..+. . ...+..++|++++ +|.. .. |..+
T Consensus 1 v~ly~~~~Cp~C~~ak~~L~~~--------~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~-----~~-~G~~ 64 (72)
T TIGR02194 1 ITVYSKNNCVQCKMTKKALEEH--------GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL-----SW-SGFR 64 (72)
T ss_pred CEEEeCCCCHHHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc-----EE-eccC
Confidence 3578899999999999999752 2344444544333 2 2347779999765 3432 22 3355
Q ss_pred HHHHHH
Q 007850 531 VVALYK 536 (587)
Q Consensus 531 ~~~l~~ 536 (587)
++.|.+
T Consensus 65 ~~~~~~ 70 (72)
T TIGR02194 65 PDKLKA 70 (72)
T ss_pred HHHHHh
Confidence 666554
No 379
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.28 E-value=0.078 Score=47.54 Aligned_cols=26 Identities=27% Similarity=0.565 Sum_probs=21.7
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhh
Q 007850 116 EFYAPWCGHCQALAPEYAAAATELKS 141 (587)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~ 141 (587)
+|..|+|+.|-...|.|.++...+..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 58999999999999999999999877
No 380
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.27 E-value=0.063 Score=49.46 Aligned_cols=41 Identities=15% Similarity=0.235 Sum_probs=31.5
Q ss_pred cEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCC
Q 007850 454 DVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGT 495 (587)
Q Consensus 454 ~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 495 (587)
.+++.|++.||+.|....+.|.++...++.. ++.++.+.++
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~-gv~vigvS~D 68 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKR-NVKLIGLSVD 68 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEECC
Confidence 4566889999999999999999999999753 3444544443
No 381
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=95.26 E-value=0.024 Score=45.42 Aligned_cols=84 Identities=15% Similarity=0.144 Sum_probs=55.4
Q ss_pred CceEEEcCcchhHHhhcCCCcEEEEEeCC--CChhhhhhhHHHHHHHHHhcCCCcEEEEEEe--CCccccccCCCCcCcE
Q 007850 434 GDVKIVVGNNFDEIVLDESKDVLLEIYAP--WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD--GTTNEHHRAKSDGFPT 509 (587)
Q Consensus 434 ~~~~~l~~~~f~~~v~~~~~~v~v~f~~~--~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id--~~~~~~~~~~i~~~Pt 509 (587)
.....++.+++++++ ......+++|... .|+.|....-++-++.+.+.+ .+..+-++ .+.....+|++..+|+
T Consensus 9 ~g~~~vd~~~ld~~l-~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~--~~~~avv~~~~e~~L~~r~gv~~~Pa 85 (107)
T PF07449_consen 9 HGWPRVDADTLDAFL-AAPGDAVLFFAGDPARFPETADVAVILPELVKAFPG--RFRGAVVARAAERALAARFGVRRWPA 85 (107)
T ss_dssp -TEEEE-CCCHHHHH-HCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTT--SEEEEEEEHHHHHHHHHHHT-TSSSE
T ss_pred cCCeeechhhHHHHH-hCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhC--ccceEEECchhHHHHHHHhCCccCCe
Confidence 457789999999997 4455555555443 244555555577777777776 45555555 2333347899999999
Q ss_pred EEEEeCCCccc
Q 007850 510 ILFFPAGNKSF 520 (587)
Q Consensus 510 ~~~~~~~~~~~ 520 (587)
++++++|+.++
T Consensus 86 Lvf~R~g~~lG 96 (107)
T PF07449_consen 86 LVFFRDGRYLG 96 (107)
T ss_dssp EEEEETTEEEE
T ss_pred EEEEECCEEEE
Confidence 99999998764
No 382
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.24 E-value=0.036 Score=43.84 Aligned_cols=39 Identities=28% Similarity=0.482 Sum_probs=28.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
++.|+++.|++|..+.+.+.++.....+...+.+.-+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~ 39 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPL 39 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecccc
Confidence 468999999999999999999985555533444444433
No 383
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=95.23 E-value=0.03 Score=42.67 Aligned_cols=55 Identities=13% Similarity=0.272 Sum_probs=35.5
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc----CCCCcCcEEEEEeCCCc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR----AKSDGFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~i~~~Pt~~~~~~~~~ 518 (587)
+++|+.+||++|...+..|++.. ..+....++.+...... .+..++|++++ +|+.
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~------i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i--~g~~ 59 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG------VTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI--GDVH 59 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC------CCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 46799999999999999998632 13444455543322222 35778999744 5543
No 384
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=95.15 E-value=0.039 Score=41.47 Aligned_cols=55 Identities=16% Similarity=0.212 Sum_probs=34.0
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccccc----CCCC-cCcEEEEEeCCCc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHR----AKSD-GFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~i~-~~Pt~~~~~~~~~ 518 (587)
+++|+.+||++|.++...|++. + ..+..+.++.+.+..+. .+.. ++|+++ -+|+.
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~-i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~--i~g~~ 61 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----G-VDYEEIDVDGDPALREEMINRSGGRRTVPQIF--IGDVH 61 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----C-CcEEEEECCCCHHHHHHHHHHhCCCCccCEEE--ECCEE
Confidence 5689999999999999988763 1 13444444433222222 3545 899875 35543
No 385
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=95.14 E-value=0.045 Score=43.72 Aligned_cols=56 Identities=14% Similarity=0.266 Sum_probs=36.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc---cc----CCCCcCcEEEEEeCCCcc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HR----AKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~----~~i~~~Pt~~~~~~~~~~ 519 (587)
++.|..+||++|+++...|.+.. ..+..+.+|...... .. -+..++|.+ |-+|+.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~~------i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~V--fi~g~~i 72 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTLG------VNPAVHEIDKEPAGKDIENALSRLGCSPAVPAV--FVGGKLV 72 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeE--EECCEEE
Confidence 66799999999999999887652 234556666543321 11 256799997 4466554
No 386
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=95.13 E-value=0.047 Score=40.83 Aligned_cols=54 Identities=15% Similarity=0.171 Sum_probs=35.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--cc----cCCCCcCcEEEEEeCCCcc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--HH----RAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~~----~~~i~~~Pt~~~~~~~~~~ 519 (587)
++.|+.+||++|++++..|++. ++.+..+|+..+. .+ ..+-..+|++++ +|+.+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~--------gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~~i 62 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK--------GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEKLV 62 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC--------CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEEE
Confidence 5679999999999999999862 2334445554433 21 224568899754 55443
No 387
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=95.09 E-value=0.57 Score=43.15 Aligned_cols=91 Identities=25% Similarity=0.354 Sum_probs=59.4
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhh-hcCCcEEE--EEEeCCCc-H--------------------------
Q 007850 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELK-SANESVVL--AKVDATEE-N-------------------------- 157 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~-~~~~~v~~--~~vd~~~~-~-------------------------- 157 (587)
+|++++|.|.-+.|| -|-.....+..+.+++. ..+.++.+ +.||=..+ +
T Consensus 66 ~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~~~~~~~~~~ltg~~~~~~ 145 (207)
T COG1999 66 KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAELNFDPRWIGLTGTPEQIE 145 (207)
T ss_pred CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhcccCCCCeeeeeCCHHHHH
Confidence 789999999999998 69999999999999887 44445544 45543221 1
Q ss_pred HHHHHcCCC---------------CCcEEEEEe-CC-eeeEeecCCCHHHHHHHHHHhc
Q 007850 158 ELAHEYDVQ---------------GFPTIYFFV-DG-QHKAYNGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 158 ~l~~~~~i~---------------~~Pt~~~~~-~g-~~~~~~g~~~~~~l~~~i~~~~ 199 (587)
++++.|+|. +...++++. +| ....|.+....+.+.+.+++.+
T Consensus 146 ~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l~ 204 (207)
T COG1999 146 EVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLKKLL 204 (207)
T ss_pred HHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHHHHh
Confidence 344455443 222344454 67 4445666566777777777655
No 388
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.98 E-value=0.15 Score=40.86 Aligned_cols=63 Identities=17% Similarity=0.348 Sum_probs=40.9
Q ss_pred hHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH-HHHH----HcCCCCCcEEEE
Q 007850 102 NFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN-ELAH----EYDVQGFPTIYF 173 (587)
Q Consensus 102 ~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~-~l~~----~~~i~~~Pt~~~ 173 (587)
.++.++.+++ +|.|..+||++|+.+...|.. + +....++.+|-..+. ++.+ --+.+.+|.+++
T Consensus 6 ~v~~~i~~~~--VVifSKs~C~~c~~~k~ll~~----~---~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI 73 (104)
T KOG1752|consen 6 KVRKMISENP--VVIFSKSSCPYCHRAKELLSD----L---GVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI 73 (104)
T ss_pred HHHHHhhcCC--EEEEECCcCchHHHHHHHHHh----C---CCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE
Confidence 3556665553 667899999999997766665 2 235677777766553 3322 235668898744
No 389
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=94.93 E-value=0.13 Score=49.06 Aligned_cols=29 Identities=14% Similarity=0.333 Sum_probs=24.5
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHH
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAK 479 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~ 479 (587)
+.+.+++.|..+.|++|+++.+.+..+.+
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 45678999999999999999998877654
No 390
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=94.83 E-value=0.1 Score=42.88 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=58.7
Q ss_pred CcchhHHhh-cCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCc--cccccCCCCcCcE-EEEEeCC
Q 007850 441 GNNFDEIVL-DESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTT--NEHHRAKSDGFPT-ILFFPAG 516 (587)
Q Consensus 441 ~~~f~~~v~-~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~i~~~Pt-~~~~~~~ 516 (587)
+-..++.+. ..++.|++-|...|-+.|..+...|.+++.+.++. ..++-+|.+. .-.+-|.+. -|. +++|=++
T Consensus 8 ~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~--a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF~rn 84 (133)
T PF02966_consen 8 GWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF--AVIYLVDIDEVPDFNQMYELY-DPCTVMFFFRN 84 (133)
T ss_dssp HHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT--EEEEEEETTTTHCCHHHTTS--SSEEEEEEETT
T ss_pred cchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc--eEEEEEEcccchhhhcccccC-CCeEEEEEecC
Confidence 345566663 45789999999999999999999999999999885 4455555543 222445677 675 5555343
Q ss_pred Cccc------Cccccccc-cCHHHHHHHHH
Q 007850 517 NKSF------DPINVDVD-RTVVALYKFLK 539 (587)
Q Consensus 517 ~~~~------~~~~~~g~-~~~~~l~~~i~ 539 (587)
+... ......+. .+.+++++.++
T Consensus 85 khm~vD~GtgnnnKin~~~~~kqe~iDiie 114 (133)
T PF02966_consen 85 KHMMVDFGTGNNNKINWAFEDKQEFIDIIE 114 (133)
T ss_dssp EEEEEESSSSSSSSBCS--SCHHHHHHHHH
T ss_pred eEEEEEecCCCccEEEEEcCcHHHHHHHHH
Confidence 3220 01123332 34666666665
No 391
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.76 E-value=0.074 Score=46.60 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=41.2
Q ss_pred hCCCeEEEEEECCCChhhhhh-hHHHHHHHHHhhhcCCcE-EEEEEeCCCc---HHHHHHcCC
Q 007850 108 ENNKFVMVEFYAPWCGHCQAL-APEYAAAATELKSANESV-VLAKVDATEE---NELAHEYDV 165 (587)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~-~p~~~~~~~~~~~~~~~v-~~~~vd~~~~---~~l~~~~~i 165 (587)
.++..+|+.|.+.||+.|..+ .+.|.+.++++...+ + .++.|.++.. ..+++++++
T Consensus 28 ~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g--~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 28 KGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKG--VDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred CCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCC--CCEEEEEECCCHHHHHHHHHhhCC
Confidence 344566666778899999999 999999999998744 5 3666666543 346667766
No 392
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=94.75 E-value=0.071 Score=39.69 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=41.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-c----cCCCCcCcEEEEEeCCCcccCccccccccC
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-H----RAKSDGFPTILFFPAGNKSFDPINVDVDRT 530 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-~----~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~ 530 (587)
+++|..+||+.|.+.+..|.+. ++.+..+|.+.+.. . ..+...+|.++ -+|+.+ | .
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~--------~i~~~~~~v~~~~~~~~~~~~~g~~~vP~if--i~g~~i-------g--g 63 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN--------GISYEEIPLGKDITGRSLRAVTGAMTVPQVF--IDGELI-------G--G 63 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc--------CCCcEEEECCCChhHHHHHHHhCCCCcCeEE--ECCEEE-------e--C
Confidence 6789999999999998888752 23344455544332 1 23677999974 455433 2 2
Q ss_pred HHHHHHHH
Q 007850 531 VVALYKFL 538 (587)
Q Consensus 531 ~~~l~~~i 538 (587)
.++|.+|+
T Consensus 64 ~~~l~~~l 71 (72)
T cd03029 64 SDDLEKYF 71 (72)
T ss_pred HHHHHHHh
Confidence 56777765
No 393
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=94.63 E-value=0.055 Score=41.27 Aligned_cols=49 Identities=16% Similarity=0.324 Sum_probs=33.1
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-----ccC-CCCcCcEEEE
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-----HRA-KSDGFPTILF 512 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~-----~~~-~i~~~Pt~~~ 512 (587)
++.|..+||++|++....|.+. ++.+..++...+. . ... +.+++|.|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~--------g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK--------GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc--------CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5779999999999999888832 2444444443333 1 223 6789999776
No 394
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=94.52 E-value=0.71 Score=38.31 Aligned_cols=74 Identities=22% Similarity=0.353 Sum_probs=50.1
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCC----CCcEEEEEeCCeeeEeecCCC
Q 007850 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQ----GFPTIYFFVDGQHKAYNGGRT 187 (587)
Q Consensus 112 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~g~~~ 187 (587)
.-++.|++|.|+=|......++. + ++.+-.+..++-..+-++++|. +--|. + .+|. -..|...
T Consensus 26 ~~~~vyksPnCGCC~~w~~~mk~-----~----Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~-V-I~Gy--~vEGHVP 92 (149)
T COG3019 26 TEMVVYKSPNCGCCDEWAQHMKA-----N----GFEVKVVETDDFLALKRRLGIPYEMQSCHTA-V-INGY--YVEGHVP 92 (149)
T ss_pred eeEEEEeCCCCccHHHHHHHHHh-----C----CcEEEEeecCcHHHHHHhcCCChhhccccEE-E-EcCE--EEeccCC
Confidence 34788999999999887666552 1 4677777776777788889875 22232 2 2443 3357778
Q ss_pred HHHHHHHHHHh
Q 007850 188 KDAIVTWIKKK 198 (587)
Q Consensus 188 ~~~l~~~i~~~ 198 (587)
.+.|..++...
T Consensus 93 a~aI~~ll~~~ 103 (149)
T COG3019 93 AEAIARLLAEK 103 (149)
T ss_pred HHHHHHHHhCC
Confidence 88888887654
No 395
>PRK13191 putative peroxiredoxin; Provisional
Probab=94.05 E-value=0.08 Score=49.11 Aligned_cols=89 Identities=6% Similarity=0.071 Sum_probs=56.7
Q ss_pred CCcEE-EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc-----------------------------cc
Q 007850 452 SKDVL-LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH-----------------------------HR 501 (587)
Q Consensus 452 ~~~v~-v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------------------~~ 501 (587)
++.++ ++|++.||+.|....+.|.+++..+... ++.++.+.++.... ..
T Consensus 33 GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~-g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 33 GRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKL-NTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHC-CCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 45544 5889999999999999999999999753 34444444432111 12
Q ss_pred CCC-------CcCcEEEEEeCCCcccCccccc--cccCHHHHHHHHHhh
Q 007850 502 AKS-------DGFPTILFFPAGNKSFDPINVD--VDRTVVALYKFLKKN 541 (587)
Q Consensus 502 ~~i-------~~~Pt~~~~~~~~~~~~~~~~~--g~~~~~~l~~~i~~~ 541 (587)
|++ ...|+.+++...+.+.....+. ..++.+++++.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 333 1368778886554442211222 257899999999753
No 396
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=93.73 E-value=0.13 Score=44.76 Aligned_cols=32 Identities=25% Similarity=0.519 Sum_probs=27.7
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 482 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~ 482 (587)
+.+.+++.|+.++|++|+.+.|.+.++...+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~ 35 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDP 35 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCC
Confidence 35678999999999999999999999887664
No 397
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=93.46 E-value=0.16 Score=40.31 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCCcEEEEEe----CCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCCcCcEEEEEeCCCcc
Q 007850 451 ESKDVLLEIY----APWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 451 ~~~~v~v~f~----~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------~~~~i~~~Pt~~~~~~~~~~ 519 (587)
+.++|+|+-. ++||++|+++...|.+.. +.+..+|...+.. ..-+...+|.+.+ +|+.+
T Consensus 10 ~~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~~--------i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi--~g~~i 78 (97)
T TIGR00365 10 KENPVVLYMKGTPQFPQCGFSARAVQILKACG--------VPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV--KGEFV 78 (97)
T ss_pred ccCCEEEEEccCCCCCCCchHHHHHHHHHHcC--------CCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE--CCEEE
Confidence 3456666554 389999999999988742 2344555543332 1225568999754 55443
No 398
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=93.21 E-value=0.14 Score=40.01 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=35.4
Q ss_pred CCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEEEeCCCc
Q 007850 452 SKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 452 ~~~v~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pt~~~~~~~~~ 518 (587)
+++|+|+-.+ +||++|+.....|.+.. ..+..++++.+.... ..-+-.++|.++ -+|+.
T Consensus 7 ~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g~~tvP~vf--i~g~~ 73 (90)
T cd03028 7 ENPVVLFMKGTPEEPRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSNWPTFPQLY--VNGEL 73 (90)
T ss_pred cCCEEEEEcCCCCCCCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhCCCCCCEEE--ECCEE
Confidence 4566666543 79999999999888753 134444444332111 123567899974 35644
No 399
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=92.83 E-value=1.1 Score=41.53 Aligned_cols=63 Identities=14% Similarity=0.226 Sum_probs=50.1
Q ss_pred CCCceEEEcCcchhHHh--hcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 432 NDGDVKIVVGNNFDEIV--LDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 432 ~~~~~~~l~~~~f~~~v--~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
++..+..+++.+..... .+.++|.||.|.+-.||+-+.-.+.|+++++++.+..++.++.|..
T Consensus 80 Pns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI~E 144 (237)
T PF00837_consen 80 PNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYIEE 144 (237)
T ss_pred CCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhHhh
Confidence 35678888988733322 3678999999999999999999999999999999866666665543
No 400
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=92.76 E-value=0.2 Score=46.06 Aligned_cols=89 Identities=11% Similarity=0.086 Sum_probs=56.2
Q ss_pred CCcEEEEEeC-CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------------------------------c
Q 007850 452 SKDVLLEIYA-PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------------------------------H 500 (587)
Q Consensus 452 ~~~v~v~f~~-~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------------------------------~ 500 (587)
++.++|+||+ .||+.|....+.|.++.+++... ++.++.|+++.... .
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~-g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~ 114 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNEL-NCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIAR 114 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHc-CCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHH
Confidence 6788889995 78999999999999999999763 34455444442110 1
Q ss_pred cCCCC------cCcEEEEEeCCCcccCcccc--ccccCHHHHHHHHHhh
Q 007850 501 RAKSD------GFPTILFFPAGNKSFDPINV--DVDRTVVALYKFLKKN 541 (587)
Q Consensus 501 ~~~i~------~~Pt~~~~~~~~~~~~~~~~--~g~~~~~~l~~~i~~~ 541 (587)
.|++. .+|+.+++.....+.....+ ...++.+++++.|...
T Consensus 115 ~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 115 SYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred HcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHhh
Confidence 23442 35788888644443111111 1246788888888753
No 401
>PRK10638 glutaredoxin 3; Provisional
Probab=92.62 E-value=0.25 Score=37.95 Aligned_cols=53 Identities=11% Similarity=0.225 Sum_probs=34.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc-c-----ccCCCCcCcEEEEEeCCCc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE-H-----HRAKSDGFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~-----~~~~i~~~Pt~~~~~~~~~ 518 (587)
+++|..+||++|++.+..|++.. +.+..+|++.+. . ..-+...+|++++ +|+.
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~g--------i~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~--~g~~ 62 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSKG--------VSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI--DAQH 62 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHcC--------CCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCEE
Confidence 66788999999999999988632 334445554433 1 1235678998744 5544
No 402
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=92.37 E-value=0.28 Score=50.45 Aligned_cols=51 Identities=12% Similarity=0.346 Sum_probs=37.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHH---HHHH---------cCCCCCcEEEE
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENE---LAHE---------YDVQGFPTIYF 173 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~---l~~~---------~~i~~~Pt~~~ 173 (587)
++.|..+|||+|++....|.+. +|.+-.+|+++++. +.++ .|.+++|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~---------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN---------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC---------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 7789999999999998777652 36677778776653 2222 36778999854
No 403
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=92.31 E-value=1.8 Score=39.31 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=30.1
Q ss_pred EEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEe
Q 007850 113 VMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVD 152 (587)
Q Consensus 113 ~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd 152 (587)
+|..|+..-||+|-...+.+.++.+.+.+ ..|...-+.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~--~~i~~~p~~ 38 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPD--VEIEWRPFP 38 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTT--CEEEEEEES
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcC--CcEEEeccc
Confidence 47789999999999999999999998833 345555553
No 404
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.03 E-value=0.57 Score=49.85 Aligned_cols=81 Identities=26% Similarity=0.414 Sum_probs=63.5
Q ss_pred EEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHH---HHHHHHhhhcCCcEEEEEEeCCCcHHHHHHc--------C
Q 007850 96 VVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEY---AAAATELKSANESVVLAKVDATEENELAHEY--------D 164 (587)
Q Consensus 96 ~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~---~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~--------~ 164 (587)
..-+.+-|...-..++|+||-.-.+||.-|+.+..+= .++|+.++. .++-++||.++-|++-+.| |
T Consensus 29 ~pW~~eAf~~A~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~---~FV~IKVDREERPDvD~~Ym~~~q~~tG 105 (667)
T COG1331 29 YPWGEEAFAKAKEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE---NFVPVKVDREERPDVDSLYMNASQAITG 105 (667)
T ss_pred cccCHHHHHHHHHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh---CceeeeEChhhccCHHHHHHHHHHHhcc
Confidence 4566888999999999999999999999999877643 467777777 7889999998877655544 3
Q ss_pred CCCCcEEEEE-eCCee
Q 007850 165 VQGFPTIYFF-VDGQH 179 (587)
Q Consensus 165 i~~~Pt~~~~-~~g~~ 179 (587)
-.++|-.+|. .+|++
T Consensus 106 ~GGWPLtVfLTPd~kP 121 (667)
T COG1331 106 QGGWPLTVFLTPDGKP 121 (667)
T ss_pred CCCCceeEEECCCCce
Confidence 5689977777 47643
No 405
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=91.99 E-value=0.5 Score=42.17 Aligned_cols=100 Identities=17% Similarity=0.348 Sum_probs=72.6
Q ss_pred CeEEcC-hhhHHHHHhCC---CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCc
Q 007850 94 DVVVLK-ERNFSDVIENN---KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFP 169 (587)
Q Consensus 94 ~v~~l~-~~~~~~~~~~~---~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~P 169 (587)
.|.+++ ++.|-..+.+. -..+|..|-+.-+-|-.+-..+.=||.++.. +.|.++-.+. ....++|....+|
T Consensus 139 ~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~----vKFckikss~-~gas~~F~~n~lP 213 (273)
T KOG3171|consen 139 FVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPI----VKFCKIKSSN-TGASDRFSLNVLP 213 (273)
T ss_pred eEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCc----eeEEEeeecc-ccchhhhcccCCc
Confidence 466665 47788887543 3568899999999999999999999998866 8998886543 3456788889999
Q ss_pred EEEEEeCCe-eeEe-------ecCCCHHHHHHHHHHh
Q 007850 170 TIYFFVDGQ-HKAY-------NGGRTKDAIVTWIKKK 198 (587)
Q Consensus 170 t~~~~~~g~-~~~~-------~g~~~~~~l~~~i~~~ 198 (587)
++.+|++|. +-.| -.......+..|++.+
T Consensus 214 ~LliYkgGeLIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 214 TLLIYKGGELIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred eEEEeeCCchhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999999992 2222 1233445556666554
No 406
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=91.89 E-value=0.092 Score=49.86 Aligned_cols=85 Identities=18% Similarity=0.301 Sum_probs=66.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc---cccCCCCcCcEEEEEeCCCcccCccccccc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE---HHRAKSDGFPTILFFPAGNKSFDPINVDVD 528 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~---~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~ 528 (587)
.-++-+.||+.||+..+..+|.++-....+.. +....++..... ...+++.+.|++.+.... -+.+|.|.
T Consensus 76 ~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~---i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~t----~~~~~~~~ 148 (319)
T KOG2640|consen 76 NDYVSLLFYASWCPFSRAVRPEFDVRSSLFSS---IQHFAVEESQALPSVFSSYGIHSEPSNLMLNQT----CPASYRGE 148 (319)
T ss_pred CCcccccchhcccCcccccCcccchhhhhccc---cccccHHHHhhcccchhccccccCCcceeeccc----cchhhccc
Confidence 55789999999999999999999999888874 222224333222 367899999999887544 24489999
Q ss_pred cCHHHHHHHHHhhCC
Q 007850 529 RTVVALYKFLKKNAS 543 (587)
Q Consensus 529 ~~~~~l~~~i~~~~~ 543 (587)
++..+|..|..+.+.
T Consensus 149 r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 149 RDLASLVNFYTEITP 163 (319)
T ss_pred ccHHHHHHHHHhhcc
Confidence 999999999998875
No 407
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.73 E-value=0.5 Score=41.53 Aligned_cols=44 Identities=18% Similarity=0.280 Sum_probs=33.6
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDG 494 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~ 494 (587)
+.+.+|+.|+...|++|+.+.+.+.++.+.+-+...+.+.-.+.
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 35678999999999999999999999999983333566665544
No 408
>PRK10824 glutaredoxin-4; Provisional
Probab=91.64 E-value=0.33 Score=39.72 Aligned_cols=61 Identities=15% Similarity=0.242 Sum_probs=36.8
Q ss_pred CCCcEEEEEeC----CCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccc----cCCCCcCcEEEEEeCCCcc
Q 007850 451 ESKDVLLEIYA----PWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH----RAKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 451 ~~~~v~v~f~~----~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~i~~~Pt~~~~~~~~~~ 519 (587)
..++|+|+--+ |||++|+++...|..+.. .+..+.++.+..... .-+-..+|.+.+ +|+.+
T Consensus 13 ~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i------~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI--~G~~I 81 (115)
T PRK10824 13 AENPILLYMKGSPKLPSCGFSAQAVQALSACGE------RFAYVDILQNPDIRAELPKYANWPTFPQLWV--DGELV 81 (115)
T ss_pred hcCCEEEEECCCCCCCCCchHHHHHHHHHHcCC------CceEEEecCCHHHHHHHHHHhCCCCCCeEEE--CCEEE
Confidence 34566665554 699999999998888632 233445554322211 125678898665 66544
No 409
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=91.25 E-value=0.33 Score=43.56 Aligned_cols=33 Identities=30% Similarity=0.588 Sum_probs=29.8
Q ss_pred CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcC
Q 007850 451 ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRG 483 (587)
Q Consensus 451 ~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~ 483 (587)
+.+..++.|+...|++|+.+.+.+..+..++.+
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~ 46 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK 46 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC
Confidence 467899999999999999999999999988755
No 410
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=91.22 E-value=4.3 Score=32.84 Aligned_cols=89 Identities=11% Similarity=0.210 Sum_probs=62.4
Q ss_pred ChhhHHHHHhCC-CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC
Q 007850 99 KERNFSDVIENN-KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 99 ~~~~~~~~~~~~-~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g 177 (587)
+..+++..+... +.++|-|+..--+ .+...|.++|..+.+ .+.|+... +..+..++++. .|.+++|+.-
T Consensus 7 s~~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rd---d~~F~~t~---~~~~~~~~~~~-~~~vvl~rp~ 76 (107)
T cd03068 7 TLKQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLRE---DYKFHHTF---DSEIFKSLKVS-PGQLVVFQPE 76 (107)
T ss_pred CHHHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhccc---CCEEEEEC---hHHHHHhcCCC-CCceEEECcH
Confidence 345677777666 7888888876433 466788899998866 57886654 34677788875 5778888322
Q ss_pred --------eeeEeecC-CCHHH-HHHHHHH
Q 007850 178 --------QHKAYNGG-RTKDA-IVTWIKK 197 (587)
Q Consensus 178 --------~~~~~~g~-~~~~~-l~~~i~~ 197 (587)
....|.|. .+.+. |.+||+.
T Consensus 77 ~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 77 KFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred HHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 45678887 66655 9999874
No 411
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=90.73 E-value=0.64 Score=37.15 Aligned_cols=78 Identities=14% Similarity=0.193 Sum_probs=51.9
Q ss_pred CcchhHHhhc-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc------cccCCCC-cCcEEEE
Q 007850 441 GNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE------HHRAKSD-GFPTILF 512 (587)
Q Consensus 441 ~~~f~~~v~~-~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~------~~~~~i~-~~Pt~~~ 512 (587)
.+.+++++.. .+++++|+=+++.|+-+.+....|++......+. +.++.+|.-... +.+++|. .-|.+++
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~--~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ~il 84 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDE--IPVYYLDVIEYRPVSNAIAEDFGVKHESPQVIL 84 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT------EEEEEGGGGHHHHHHHHHHHT----SSEEEE
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc--ceEEEEEEEeCchhHHHHHHHhCCCcCCCcEEE
Confidence 4567776633 3678888889999999999999999998887653 666666665432 3678876 6699999
Q ss_pred EeCCCccc
Q 007850 513 FPAGNKSF 520 (587)
Q Consensus 513 ~~~~~~~~ 520 (587)
+++|+.+.
T Consensus 85 i~~g~~v~ 92 (105)
T PF11009_consen 85 IKNGKVVW 92 (105)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 99998763
No 412
>PRK09810 entericidin A; Provisional
Probab=90.68 E-value=0.22 Score=31.85 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=13.9
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~ 23 (587)
||||+++++ ++++++|+||...
T Consensus 1 mMkk~~~l~-~~~~~~L~aCNTv 22 (41)
T PRK09810 1 MMKRLIVLV-LLASTLLTGCNTA 22 (41)
T ss_pred ChHHHHHHH-HHHHHHHhhhhhc
Confidence 666655544 4455678999644
No 413
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=90.29 E-value=0.83 Score=36.58 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=37.3
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--cc-----CCCCcCcEEEEEeCCCcc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--HR-----AKSDGFPTILFFPAGNKS 519 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~~-----~~i~~~Pt~~~~~~~~~~ 519 (587)
+|.|..+||+.|+++...|.. +. ....++.+|...+.. ++ -+.+.+|.+++ +|+-+
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~--v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk~i 78 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LG--VNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGKFI 78 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CC--CCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCEEE
Confidence 445889999999998888877 33 356677777764432 21 13558998665 66443
No 414
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=88.81 E-value=2.5 Score=39.25 Aligned_cols=92 Identities=20% Similarity=0.369 Sum_probs=63.7
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhhhcCC-c--EEEEEEeCCCc--------------------------HH
Q 007850 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELKSANE-S--VVLAKVDATEE--------------------------NE 158 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~~~~-~--v~~~~vd~~~~--------------------------~~ 158 (587)
.|++++++|--+.|| -|=.+...+.++.++++.... . -.|+.||=..+ ..
T Consensus 138 ~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~ 217 (280)
T KOG2792|consen 138 LGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQ 217 (280)
T ss_pred ccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHH
Confidence 589999999999999 588888888888888766421 1 25777775332 15
Q ss_pred HHHHcCCCCCc-------------EEEEE--e-CCeeeEeecC-CCHHHHHHHHHHhcC
Q 007850 159 LAHEYDVQGFP-------------TIYFF--V-DGQHKAYNGG-RTKDAIVTWIKKKIG 200 (587)
Q Consensus 159 l~~~~~i~~~P-------------t~~~~--~-~g~~~~~~g~-~~~~~l~~~i~~~~~ 200 (587)
+|++|.|.--+ ++++| . +|..+.|.|. .+.+++.+-|.+.+.
T Consensus 218 vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~ 276 (280)
T KOG2792|consen 218 VAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVA 276 (280)
T ss_pred HHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHH
Confidence 67777664222 23333 3 7788888875 677888877776653
No 415
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=88.49 E-value=2 Score=31.67 Aligned_cols=62 Identities=18% Similarity=0.207 Sum_probs=51.2
Q ss_pred eEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007850 112 FVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 112 ~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (587)
+.+..|-+..-+.+++....+.++.+.+.+ ..+.+=.||..+++.+++.++|-.+||++=..
T Consensus 2 ~~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~--~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~~ 63 (72)
T cd02978 2 YVLRLYVAGRTPKSERALQNLKRILEELLG--GPYELEVIDVLKQPQLAEEDKIVATPTLVKVL 63 (72)
T ss_pred eEEEEEECCCCchHHHHHHHHHHHHHHhcC--CcEEEEEEEcccCHhHHhhCCEEEechhhhcC
Confidence 356667777778899999999999888753 37888899999999999999999999976443
No 416
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=88.24 E-value=0.66 Score=47.78 Aligned_cols=53 Identities=9% Similarity=0.163 Sum_probs=35.2
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc--c---c---------CCCCcCcEEEEEeCCCc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH--H---R---------AKSDGFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~--~---~---------~~i~~~Pt~~~~~~~~~ 518 (587)
|+.|..+||++|+++...|.+. ++.+-.+|++.+.. . . .+.+++|++++ +|+.
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~--------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi--~~~~ 70 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN--------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV--GDVH 70 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC--------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE--CCEE
Confidence 6789999999999999888874 23444455543331 1 1 25678999865 4543
No 417
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=87.93 E-value=7.9 Score=30.44 Aligned_cols=73 Identities=12% Similarity=0.085 Sum_probs=52.1
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCC--eeeEeecCCC
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDG--QHKAYNGGRT 187 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g--~~~~~~g~~~ 187 (587)
+.+.++.|..+. ..|......++++++. .+ ++.+-..+... ..|++.+.++| ..++|.|...
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~l-Sd---kI~~~~~~~~~-----------~~P~~~i~~~~~~~gIrF~GiP~ 82 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASL-SD---KITLEEDNDDE-----------RKPSFSINRPGEDTGIRFAGIPM 82 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHh-CC---ceEEEEecCCC-----------CCCEEEEecCCCcccEEEEecCC
Confidence 556677777665 8898888888887754 33 46664433211 47999998877 4489999988
Q ss_pred HHHHHHHHHHh
Q 007850 188 KDAIVTWIKKK 198 (587)
Q Consensus 188 ~~~l~~~i~~~ 198 (587)
-.++..||...
T Consensus 83 GhEf~Slilai 93 (94)
T cd02974 83 GHEFTSLVLAL 93 (94)
T ss_pred chhHHHHHHHh
Confidence 88888888654
No 418
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=87.74 E-value=2.3 Score=38.03 Aligned_cols=55 Identities=20% Similarity=0.355 Sum_probs=41.9
Q ss_pred CCCeEEEEEECCCCh-hhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc---HHHHHHc
Q 007850 109 NNKFVMVEFYAPWCG-HCQALAPEYAAAATELKSANESVVLAKVDATEE---NELAHEY 163 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~-~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~---~~l~~~~ 163 (587)
.|++++|.|.-+.|+ .|-.....+.++.+.+...+.++.++.|.++-. ++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 689999999999995 799999999999999887655677777776632 4444444
No 419
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=85.77 E-value=5.2 Score=37.93 Aligned_cols=37 Identities=24% Similarity=0.268 Sum_probs=27.3
Q ss_pred HHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHHHHh
Q 007850 158 ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 158 ~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~ 198 (587)
.+...+||.++||+++-.. .+.|..+.+.|.+.|...
T Consensus 206 ~~a~~~gv~gTPt~~v~~~----~~~g~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIVNGK----LVPGLPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEECCe----eecCCCCHHHHHHHHHHh
Confidence 4566789999999865432 777888888888777654
No 420
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=85.27 E-value=4.7 Score=30.94 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=60.7
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCH
Q 007850 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (587)
Q Consensus 111 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (587)
.+++=.|.|..-+-+++....+.++.+.+.. + .+.+=.||..+++.+++.++|-++||++=...+-..+..|.++.
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~-g-~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P~P~rriiGdls~ 78 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQ-G-VYALKVIDVLKNPQLAEEDKILATPTLSKILPPPVRKIIGDLSD 78 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-C-ceEEEEEEcccCHhHHhHCCEEEecHHhhcCCCCcceeeccccc
Confidence 4667778888899999999999999887654 2 48888899999999999999999999766555545566676643
No 421
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=84.66 E-value=0.76 Score=25.86 Aligned_cols=18 Identities=22% Similarity=0.390 Sum_probs=10.4
Q ss_pred chhHHHHHHHHHHHhhhhh
Q 007850 3 TRYILLLSLTILLLFSPAL 21 (587)
Q Consensus 3 ~~~~l~~~~~~~l~~~~~~ 21 (587)
+|+++ ++++.++.|+||+
T Consensus 7 mKkil-~~l~a~~~LagCs 24 (25)
T PF08139_consen 7 MKKIL-FPLLALFMLAGCS 24 (25)
T ss_pred HHHHH-HHHHHHHHHhhcc
Confidence 34443 3344556789995
No 422
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=84.65 E-value=10 Score=29.77 Aligned_cols=74 Identities=9% Similarity=0.047 Sum_probs=49.8
Q ss_pred CCcE-EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeCCCcccCccccccccC
Q 007850 452 SKDV-LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRT 530 (587)
Q Consensus 452 ~~~v-~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~ 530 (587)
.++| ++.|..+. ..|..+...+++++..-. ++.+-..+... ..|++.+..+|+. ..++|.|.+.
T Consensus 18 ~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSd---kI~~~~~~~~~---------~~P~~~i~~~~~~--~gIrF~GiP~ 82 (94)
T cd02974 18 ENPVELVASLDDS-EKSAELLELLEEIASLSD---KITLEEDNDDE---------RKPSFSINRPGED--TGIRFAGIPM 82 (94)
T ss_pred CCCEEEEEEeCCC-cchHHHHHHHHHHHHhCC---ceEEEEecCCC---------CCCEEEEecCCCc--ccEEEEecCC
Confidence 4455 55565555 899999999999887632 34443322211 4799999877744 4689999887
Q ss_pred HHHHHHHHHh
Q 007850 531 VVALYKFLKK 540 (587)
Q Consensus 531 ~~~l~~~i~~ 540 (587)
=.++..||..
T Consensus 83 GhEf~Slila 92 (94)
T cd02974 83 GHEFTSLVLA 92 (94)
T ss_pred chhHHHHHHH
Confidence 7788877753
No 423
>PRK09301 circadian clock protein KaiB; Provisional
Probab=84.61 E-value=4.5 Score=32.03 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=62.6
Q ss_pred CCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCH
Q 007850 110 NKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTK 188 (587)
Q Consensus 110 ~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~ 188 (587)
+.+++=.|.|..-+.+++....+.++.+.+.. + .+.+=.||..+++.+++.++|-++||++=.-.+-..+..|.++.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~-g-~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P~P~rriiGDlsd 81 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFK-G-VYALKVIDVLKNPQLAEEDKILATPTLAKILPPPVRKIIGDLSD 81 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcC-C-ceEEEEEEcccCHhHHhHCCeEEecHHhhcCCCCcceeeccccc
Confidence 46788889999999999999999999887654 2 48888899999999999999999999765555555567777654
No 424
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=84.49 E-value=3.4 Score=35.55 Aligned_cols=51 Identities=10% Similarity=0.240 Sum_probs=35.2
Q ss_pred EEEEECC------CChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHH----HHHcCC----CCCcEEEE
Q 007850 114 MVEFYAP------WCGHCQALAPEYAAAATELKSANESVVLAKVDATEENEL----AHEYDV----QGFPTIYF 173 (587)
Q Consensus 114 ~v~f~a~------wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l----~~~~~i----~~~Pt~~~ 173 (587)
+|.|+++ +|++|+.....|... +|.+-.+|.+.++.+ .+.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~---------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF---------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC---------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 4566777 899999998877653 477778888776543 334444 57888653
No 425
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=84.19 E-value=1.4 Score=40.71 Aligned_cols=32 Identities=31% Similarity=0.731 Sum_probs=27.1
Q ss_pred CCcEEEEEeCCCChhhhhhhHHH---HHHHHHhcC
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTY---NKLAKHLRG 483 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~---~~~~~~~~~ 483 (587)
+++.||.|++-.|++|..+.+.+ ..+.+.+.+
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~ 71 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE 71 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC
Confidence 46779999999999999999976 777877765
No 426
>COG5510 Predicted small secreted protein [Function unknown]
Probab=83.68 E-value=1.2 Score=28.65 Aligned_cols=23 Identities=30% Similarity=0.312 Sum_probs=12.7
Q ss_pred CcchhHHH--HHHHHHHHhhhhhhh
Q 007850 1 MSTRYILL--LSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~--~~~~~~l~~~~~~~~ 23 (587)
||||.+++ +++++.+++++|...
T Consensus 1 mmk~t~l~i~~vll~s~llaaCNT~ 25 (44)
T COG5510 1 MMKKTILLIALVLLASTLLAACNTM 25 (44)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhhh
Confidence 66664433 333344678899543
No 427
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=83.36 E-value=1.1 Score=29.66 Aligned_cols=23 Identities=13% Similarity=0.145 Sum_probs=13.2
Q ss_pred CcchhHHH--HHHHHHHHhhhhhhh
Q 007850 1 MSTRYILL--LSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~--~~~~~~l~~~~~~~~ 23 (587)
|+||.+.+ +++++++.++||...
T Consensus 1 MmKk~i~~i~~~l~~~~~l~~CnTv 25 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTVLTACNTT 25 (48)
T ss_pred ChHHHHHHHHHHHHHHHHHhhhhhh
Confidence 66665543 333344668999643
No 428
>PRK15396 murein lipoprotein; Provisional
Probab=83.16 E-value=1 Score=33.73 Aligned_cols=23 Identities=13% Similarity=0.210 Sum_probs=14.9
Q ss_pred CcchhHHHHHHHH-HHHhhhhhhh
Q 007850 1 MSTRYILLLSLTI-LLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~~~~~~-~l~~~~~~~~ 23 (587)
|+++++++..+++ +++|+||.+.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs~ 24 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSSN 24 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCCc
Confidence 7776665544444 5678999654
No 429
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=81.97 E-value=19 Score=30.84 Aligned_cols=124 Identities=14% Similarity=0.152 Sum_probs=80.2
Q ss_pred eEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-----------HHHHH-H
Q 007850 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-----------NELAH-E 162 (587)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-----------~~l~~-~ 162 (587)
+..++++.+.-.--+|++++|.=.|+-|+.--+. ..|+.|+++|++. ++.++..-|..- ..+|+ .
T Consensus 10 ~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~--Gf~VLgFPcNQF~~QEPg~~eEI~~fC~~~ 86 (162)
T COG0386 10 VKDIDGEPVSLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDK--GFEVLGFPCNQFGGQEPGSDEEIAKFCQLN 86 (162)
T ss_pred eeccCCCCccHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhC--CcEEEeccccccccCCCCCHHHHHHHHHhc
Confidence 4445555555444579999999999999987755 5788888888884 588888888642 25564 4
Q ss_pred cCCCCCcEEEEEe-CCeeeEeecCCCHHHHHHHHHHhcCCC--cccccchhHHHHhcccCCeEEEEEecCCCC
Q 007850 163 YDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIKKKIGPG--IYNITTLDEAERVLTSETKVVLGYLNSLVG 232 (587)
Q Consensus 163 ~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~~i~~~~~~~--~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~ 232 (587)
|||+ +|-+--++ +|. ...-|.+|+....+.. ...|. ..+.+|+-..+.-||.-|.+...
T Consensus 87 YgVt-Fp~f~Ki~VnG~--------~a~PLy~~L~~~~~g~~~~~~Ik--WNFtKFLvdr~G~VV~Rf~p~t~ 148 (162)
T COG0386 87 YGVT-FPMFSKIDVNGK--------NAHPLYKYLKEQKPGKLGGKDIK--WNFTKFLVDRDGNVVKRFSPKTK 148 (162)
T ss_pred cCce-eeeeeEEeecCC--------CCCcHHHHHHhcCCCCccCCccc--eeeEEEEEcCCCcEEEeeCCCCC
Confidence 6774 77776664 552 2345667776655321 12221 35677887666667766665443
No 430
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=81.45 E-value=1.2 Score=33.65 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=16.3
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~ 23 (587)
||++.++..+++.+++|+||.+.
T Consensus 1 mk~klll~aviLs~~LLaGCAs~ 23 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVNE 23 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCCc
Confidence 77777666655556789999754
No 431
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=80.32 E-value=9.7 Score=27.82 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=34.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-HHHHHHcCCCCCcEEE
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIY 172 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~ 172 (587)
+.|+.+||++|++.+-.+.+. +..+.+..||.... +++.+......+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~-------gl~~e~~~v~~~~~~~~~~~~np~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLA-------GITVELREVELKNKPAEMLAASPKGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHc-------CCCcEEEEeCCCCCCHHHHHHCCCCCCCEEE
Confidence 467889999999887655542 23466667765433 4555555677899984
No 432
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=78.69 E-value=19 Score=26.78 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=40.0
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc----HHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE----NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKD 189 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~ 189 (587)
+..++.++|+.|++.+-.+.+.. -.+.. +++... .++.+..+-..+|+++.-.+|.. .....
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~g-------i~y~~--~~v~~~~~~~~~~~~~~p~~~vP~l~~~~~~~~-----l~es~ 67 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELE-------LDVIL--YPCPKGSPKRDKFLEKGGKVQVPYLVDPNTGVQ-----MFESA 67 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcC-------CcEEE--EECCCChHHHHHHHHhCCCCcccEEEeCCCCeE-----EEcHH
Confidence 45677889999998876665432 12333 444332 23433335568998743223421 12457
Q ss_pred HHHHHHHHh
Q 007850 190 AIVTWIKKK 198 (587)
Q Consensus 190 ~l~~~i~~~ 198 (587)
.|.+|+...
T Consensus 68 ~I~~yL~~~ 76 (77)
T cd03041 68 DIVKYLFKT 76 (77)
T ss_pred HHHHHHHHh
Confidence 777777653
No 433
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=76.53 E-value=26 Score=31.40 Aligned_cols=87 Identities=25% Similarity=0.377 Sum_probs=56.7
Q ss_pred CCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC----------------------------cHHHH
Q 007850 110 NKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----------------------------ENELA 160 (587)
Q Consensus 110 ~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----------------------------~~~l~ 160 (587)
++++++.|| +..-+-|-.+...|.+.+.+++..+ +.++.+.++. ..++|
T Consensus 33 gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g--~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs 110 (194)
T COG0450 33 GKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRG--VEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIA 110 (194)
T ss_pred CcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcC--CEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHH
Confidence 366666665 4466778889999999999999865 4555554432 34788
Q ss_pred HHcCCCC------CcEEEEEe-CC--eee-Eee--cCCCHHHHHHHHHHh
Q 007850 161 HEYDVQG------FPTIYFFV-DG--QHK-AYN--GGRTKDAIVTWIKKK 198 (587)
Q Consensus 161 ~~~~i~~------~Pt~~~~~-~g--~~~-~~~--g~~~~~~l~~~i~~~ 198 (587)
+.||+.. +=.+++++ +| +.. .|. -+++.+++.+-+...
T Consensus 111 ~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 111 RAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 9998753 22456665 67 222 222 267888888777654
No 434
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=76.11 E-value=26 Score=25.97 Aligned_cols=73 Identities=14% Similarity=0.186 Sum_probs=42.6
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe--CCeeeEeecCCCHHHH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV--DGQHKAYNGGRTKDAI 191 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~--~g~~~~~~g~~~~~~l 191 (587)
+..|+.++|+.|++.+-.+... + -.+....+|......+ +.-+-..+|++..=. +|.. -.....|
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~-----g--i~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~-----l~eS~~I 68 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYH-----G--IPYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ-----LVDSSVI 68 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHC-----C--CceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE-----EEcHHHH
Confidence 4567889999999998665542 1 2344444443222333 334566899886432 2321 1256778
Q ss_pred HHHHHHhc
Q 007850 192 VTWIKKKI 199 (587)
Q Consensus 192 ~~~i~~~~ 199 (587)
.+|+.+.+
T Consensus 69 ~~yL~~~~ 76 (77)
T cd03040 69 ISTLKTYL 76 (77)
T ss_pred HHHHHHHc
Confidence 88887765
No 435
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=75.71 E-value=11 Score=35.33 Aligned_cols=87 Identities=11% Similarity=0.125 Sum_probs=56.9
Q ss_pred CCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCCCc----EEEEEEeCCcccc---------------------------
Q 007850 452 SKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGVDS----IVIAKMDGTTNEH--------------------------- 499 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~~~----~~~~~id~~~~~~--------------------------- 499 (587)
++.++++|.-+.||. |-.....+.++...+..... -.|+.+|-.....
T Consensus 139 Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqvk~v 218 (280)
T KOG2792|consen 139 GKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQVKQV 218 (280)
T ss_pred cceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHHHHH
Confidence 689999999999998 87777777777776655432 3577887754332
Q ss_pred -ccCCCCcC-------------cEEEEE---eCCCcccCcccccc-ccCHHHHHHHHHhhC
Q 007850 500 -HRAKSDGF-------------PTILFF---PAGNKSFDPINVDV-DRTVVALYKFLKKNA 542 (587)
Q Consensus 500 -~~~~i~~~-------------Pt~~~~---~~~~~~~~~~~~~g-~~~~~~l~~~i~~~~ 542 (587)
+.|.|..- -++++| |.|+-+ .|.| ..+.+++.+-|.++.
T Consensus 219 ak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fv----d~~GrN~~~~~~~~~I~~~v 275 (280)
T KOG2792|consen 219 AKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFV----DYYGRNYDADELADSILKHV 275 (280)
T ss_pred HHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCccee----hhhcccCCHHHHHHHHHHHH
Confidence 11221100 145555 555444 6777 778899988887764
No 436
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=75.54 E-value=5.9 Score=36.52 Aligned_cols=46 Identities=13% Similarity=0.217 Sum_probs=40.2
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCC-cEEEEEEeCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANE-SVVLAKVDAT 154 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~-~v~~~~vd~~ 154 (587)
.|.++||-+-..+|..|..-+..|+.|..++...|. +|.|+.||--
T Consensus 25 ~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 25 LGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred CCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 578999999999999999999999999998877654 7999999854
No 437
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=75.14 E-value=10 Score=36.74 Aligned_cols=153 Identities=12% Similarity=0.049 Sum_probs=85.7
Q ss_pred CcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHHHHhcCCCcccccchhHH----HHhcccCCeEEEEEecCC
Q 007850 155 EENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEA----ERVLTSETKVVLGYLNSL 230 (587)
Q Consensus 155 ~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~----~~~~~~~~~~~i~~~~~~ 230 (587)
-.++++++++|.-+|-.+.+.+..... .-..+.+++.+.+...-..+-+..-+..++ +++....+.+++.-+++.
T Consensus 11 l~~~~~~~~~I~vvPl~I~~~~~~y~D-~~~i~~~~~y~~~~~~~~~p~TS~ps~~~~~~~~~~l~~~~~~vi~i~iSs~ 89 (275)
T TIGR00762 11 LPPELIEEYGITVVPLTVIIDGKTYRD-GVDITPEEFYEKLKESKELPKTSQPSPGEFLELYEKLLEEGDEVLSIHLSSG 89 (275)
T ss_pred CCHHHHHHcCCEEEEEEEEECCEEeec-CCCCCHHHHHHHHHhcCCCCCcCCCCHHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence 347788999999999888775333322 224788899888876322212222233443 444445555555556665
Q ss_pred CCcchHHHHHhcccCCceeEEecCChhHHHhcCCCCCCCCCeEEEeccCCcceeeccCCCCChhHHHHHHHhcCCCceee
Q 007850 231 VGSESEVLADASRLEDDVNFYQTTNPDVAKIFHLDSKVNRPALVMVKKETEKISYFADGKFDKSTIADFVFSNKLPLVTI 310 (587)
Q Consensus 231 ~~~~~~~f~~~a~~~~~~~F~~~~~~~l~~~~~~~~~~~~p~l~~~~~~~~~~~~y~~g~~~~~~i~~fi~~~~~p~v~~ 310 (587)
-+..+.....+++...+..+..+.+..+....+.- +..... .. ..-.+.+++.+|+..........
T Consensus 90 lSgty~~a~~aa~~~~~~~i~ViDS~~~s~~~g~~---------v~~a~~----~~-~~G~s~~eI~~~l~~~~~~~~~~ 155 (275)
T TIGR00762 90 LSGTYQSARQAAEMVDEAKVTVIDSKSASMGLGLL---------VLEAAK----LA-EEGKSLEEILAKLEELRERTKLY 155 (275)
T ss_pred hhHHHHHHHHHHhhCCCCCEEEECChHHHHHHHHH---------HHHHHH----HH-HcCCCHHHHHHHHHHHHhhcEEE
Confidence 56677777777655444456655555544333311 111000 01 22247888999998777555555
Q ss_pred cCCCCccccccC
Q 007850 311 FTRENAPSVFES 322 (587)
Q Consensus 311 lt~~~~~~~~~~ 322 (587)
+..+++..+...
T Consensus 156 f~v~~L~~L~~g 167 (275)
T TIGR00762 156 FVVDTLEYLVKG 167 (275)
T ss_pred EEECcHHHHHhc
Confidence 555555544433
No 438
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=74.24 E-value=1.5 Score=28.08 Aligned_cols=20 Identities=10% Similarity=0.170 Sum_probs=12.0
Q ss_pred CcchhHHHHHHHHHHHhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPAL 21 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~ 21 (587)
|||..++.++ ++.++|+||-
T Consensus 1 MkKi~~~~i~-~~~~~L~aCQ 20 (46)
T PF02402_consen 1 MKKIIFIGIF-LLTMLLAACQ 20 (46)
T ss_pred CcEEEEeHHH-HHHHHHHHhh
Confidence 7755554443 3347789994
No 439
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=74.15 E-value=33 Score=25.33 Aligned_cols=72 Identities=18% Similarity=0.187 Sum_probs=49.9
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-HHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHH
Q 007850 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTW 194 (587)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~ 194 (587)
+++.++|+.|++..-.+.. ++ -.+.+..++..+. ..+.+...-..+|++. .+|... .+...|.+|
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~-----~~--i~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~~l-----~dS~~I~~y 66 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEE-----KG--IPYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGEVL-----TDSAAIIEY 66 (75)
T ss_dssp EEEETTSHHHHHHHHHHHH-----HT--EEEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTEEE-----ESHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHH-----cC--CeEEEeccCcccchhHHHhhcccccceEEE--ECCEEE-----eCHHHHHHH
Confidence 4678999999998755543 22 2466777776654 5566666778899996 556422 267888899
Q ss_pred HHHhcCC
Q 007850 195 IKKKIGP 201 (587)
Q Consensus 195 i~~~~~~ 201 (587)
+.+..+.
T Consensus 67 L~~~~~~ 73 (75)
T PF13417_consen 67 LEERYPG 73 (75)
T ss_dssp HHHHSTS
T ss_pred HHHHcCC
Confidence 9887654
No 440
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=73.98 E-value=9.2 Score=32.07 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=39.9
Q ss_pred EEEeCCccccccCCCCcCcEEEEEeCCC--------cccCccccccccCHHHHHHHHHhhCC
Q 007850 490 AKMDGTTNEHHRAKSDGFPTILFFPAGN--------KSFDPINVDVDRTVVALYKFLKKNAS 543 (587)
Q Consensus 490 ~~id~~~~~~~~~~i~~~Pt~~~~~~~~--------~~~~~~~~~g~~~~~~l~~~i~~~~~ 543 (587)
+.+.++.....+|+|+.+|++++.+++. .........|..+.+.-++.+.+.+.
T Consensus 55 ~~v~IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~g~ 116 (130)
T TIGR02742 55 SGVQIDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQDGD 116 (130)
T ss_pred CcEEEChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHhCC
Confidence 5667778888999999999999998774 00012256688899888888876654
No 441
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=73.64 E-value=2.7 Score=33.88 Aligned_cols=82 Identities=4% Similarity=-0.048 Sum_probs=41.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccC--CCCcCcEEEEEeCCCcccCccccc--cccCH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA--KSDGFPTILFFPAGNKSFDPINVD--VDRTV 531 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~--~i~~~Pt~~~~~~~~~~~~~~~~~--g~~~~ 531 (587)
+.+|+.|+|+.|++....|.+- + ..+.+.++..+.-....+ -+.....--++......++..... ...+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~-----~-i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~~yk~l~l~~~~~~s~ 74 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEAR-----G-VAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGTTWRKLDDAQKAALDA 74 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHc-----C-CCeEEEecccCCCCHHHHHHHHHHhChHHHHccCchHHHhCChhhhccCCH
Confidence 3579999999999988888763 2 234455544433222111 000111122333333322211121 23466
Q ss_pred HHHHHHHHhhCC
Q 007850 532 VALYKFLKKNAS 543 (587)
Q Consensus 532 ~~l~~~i~~~~~ 543 (587)
++++++|.++-.
T Consensus 75 ~e~~~~l~~~p~ 86 (105)
T cd03035 75 AKAIALMLEHPS 86 (105)
T ss_pred HHHHHHHHhCcC
Confidence 788888887654
No 442
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=73.28 E-value=2.8 Score=33.80 Aligned_cols=82 Identities=6% Similarity=0.057 Sum_probs=44.6
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc---cc-CCCCcCcEEEEEeCCCcccCcccc--cccc
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH---HR-AKSDGFPTILFFPAGNKSFDPINV--DVDR 529 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~---~~-~~i~~~Pt~~~~~~~~~~~~~~~~--~g~~ 529 (587)
+..|+.++|+.|++....|++. + ..+.++++..+.... .. .+-.+.+.--++.......+.... ....
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~-----~-i~~~~idi~~~~~~~~~l~~~~~~~~~~~~~li~~~~~~~~~l~~~~~~~l 74 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEH-----G-IEYEFIDYLKEPPTKEELKELLAKLGLGVEDLFNTRGTPYRKLGLADKDEL 74 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHc-----C-CCcEEEeeccCCCCHHHHHHHHHhcCCCHHHHHhcCCchHHHcCCccccCC
Confidence 3579999999999998888773 2 234444444333222 11 122233333333332221111111 2456
Q ss_pred CHHHHHHHHHhhCC
Q 007850 530 TVVALYKFLKKNAS 543 (587)
Q Consensus 530 ~~~~l~~~i~~~~~ 543 (587)
+.++++++|.++-.
T Consensus 75 s~~e~~~~l~~~p~ 88 (105)
T cd02977 75 SDEEALELMAEHPK 88 (105)
T ss_pred CHHHHHHHHHhCcC
Confidence 88999999998765
No 443
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=73.08 E-value=10 Score=35.71 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=43.6
Q ss_pred ceEEEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEe
Q 007850 435 DVKIVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFP 514 (587)
Q Consensus 435 ~~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~ 514 (587)
...+++..++ ..++|+.+++..+.||+.|...+=.|-.+..++.+. .+....-|... .-..+|++.|..
T Consensus 45 ~~~kvsn~d~----~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~-~l~~~~S~~~d------~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 45 NFFKVSNQDL----APNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNF-SLEYHYSDPYD------NYPNTPTLIFNN 113 (249)
T ss_pred ceeeecCccc----CCCCeeEEEEEecccCccchhhHHHHHHHHHhcCCe-eeEEeecCccc------CCCCCCeEEEec
Confidence 3445554432 357899999999999999988776666666777663 44443333311 123457766653
Q ss_pred C
Q 007850 515 A 515 (587)
Q Consensus 515 ~ 515 (587)
.
T Consensus 114 ~ 114 (249)
T PF06053_consen 114 Y 114 (249)
T ss_pred C
Confidence 3
No 444
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.50 E-value=1e+02 Score=30.55 Aligned_cols=163 Identities=12% Similarity=0.125 Sum_probs=96.0
Q ss_pred cchhhHHHHHHHHHHhccCceEEEEEEcCCcccccchhhhcCCcCCCCcEEEEecCCCCccccCCCCCCHHHHHHHHHHH
Q 007850 335 NDSEKLLPVFEEAAKSFKGKLIFVYVQMDNEDVGKPVSEYFGITGEAPKVLAYTGNDDAKKHILDGELTLDKIKTFGEDF 414 (587)
Q Consensus 335 ~~~~~~~~~l~~vA~~~~~~l~f~~vd~~~~~~~~~~~~~~gi~~~~~p~~~i~~~~~~~~y~~~~~~t~e~i~~fi~~~ 414 (587)
..+++.++.+.++|.-- +++.+-..+ +....|.+.+-.++...--.|.+-.--..+..++...
T Consensus 31 ~~s~~~~~ll~eia~~S-~kis~~~~~----------------~~~RkpSF~i~r~g~~~gv~FAglPlGHEftSlVLaL 93 (520)
T COG3634 31 EKSKEIKELLDEIASLS-DKISLEEDS----------------DLVRKPSFSINRPGEDQGVRFAGLPLGHEFTSLVLAL 93 (520)
T ss_pred cccHHHHHHHHHHHhhc-cceeeeecC----------------ccccCCceeecCCCcccceEEecCcccchHHHHHHHH
Confidence 44677788888887643 444443221 0122577777766655555555544444455555555
Q ss_pred hcCCCCCCCcCCCCCCCCCCceEEEcCcchhHHhhc-CCCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEe
Q 007850 415 LEGKLKPFFKSDPIPETNDGDVKIVVGNNFDEIVLD-ESKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMD 493 (587)
Q Consensus 415 ~~gkl~~~~ks~~~p~~~~~~~~~l~~~~f~~~v~~-~~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id 493 (587)
++=.=+| | ++..+-.++ +.+ ++..-+=-|++-.|..|-..-..++-++-.-+ ++.-..||
T Consensus 94 lqv~G~p-------p--------k~~q~vieq-ik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp---~I~H~~Id 154 (520)
T COG3634 94 LQVGGHP-------P--------KEDQDVIEQ-IKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNP---RIKHTAID 154 (520)
T ss_pred HHhcCCC-------C--------chhHHHHHH-HHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCC---CceeEEec
Confidence 4421111 1 222222233 333 23345666777889999888777777665533 47777777
Q ss_pred CCc--cccccCCCCcCcEEEEEeCCCcccCccccccccCHHHHHHHHHh
Q 007850 494 GTT--NEHHRAKSDGFPTILFFPAGNKSFDPINVDVDRTVVALYKFLKK 540 (587)
Q Consensus 494 ~~~--~~~~~~~i~~~Pt~~~~~~~~~~~~~~~~~g~~~~~~l~~~i~~ 540 (587)
-.. ++.+.-+|.++||+++ +|.. .-.|-.+.++|+.-|..
T Consensus 155 Ga~Fq~Evear~IMaVPtvfl--nGe~-----fg~GRmtleeilaki~~ 196 (520)
T COG3634 155 GALFQDEVEARNIMAVPTVFL--NGEE-----FGQGRMTLEEILAKIDT 196 (520)
T ss_pred chhhHhHHHhccceecceEEE--cchh-----hcccceeHHHHHHHhcC
Confidence 643 4455668999999654 7766 45677888888877764
No 445
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=71.95 E-value=39 Score=29.46 Aligned_cols=122 Identities=16% Similarity=0.174 Sum_probs=78.4
Q ss_pred eEEcChhhHHHHHhCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc--------H----HHHHH
Q 007850 95 VVVLKERNFSDVIENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE--------N----ELAHE 162 (587)
Q Consensus 95 v~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~--------~----~l~~~ 162 (587)
+..++++.+.--...|+++||-=-|+.|+.-..--..|..+.++|++. ++.+++.-|..- . .++.+
T Consensus 19 ~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~--Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r 96 (171)
T KOG1651|consen 19 AKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQ--GLEILAFPCNQFGNQEPGSNEEILNFVKVR 96 (171)
T ss_pred EecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhC--CeEEEEeccccccCcCCCCcHHHHHHHHhc
Confidence 444445444444457889888888999999987778999999999884 588888888532 2 23455
Q ss_pred cCCCCCcEEEEEe-CCeeeEeecCCCHHHHHHHHHHhcCCCcccccchhHHHHhcccCCeEEEEEec
Q 007850 163 YDVQGFPTIYFFV-DGQHKAYNGGRTKDAIVTWIKKKIGPGIYNITTLDEAERVLTSETKVVLGYLN 228 (587)
Q Consensus 163 ~~i~~~Pt~~~~~-~g~~~~~~g~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~ 228 (587)
|+.. +|-+-=++ +|. ...-+.+|++..-+..+.. .-.-.+.+|+-..+..+|.-|.
T Consensus 97 ~~~~-f~if~KidVNG~--------~~~PlykfLK~~~~~~lg~-~IkWNF~KFLVd~~G~vv~Ry~ 153 (171)
T KOG1651|consen 97 YGAE-FPIFQKIDVNGD--------NADPLYKFLKKVKGGPLGD-DIKWNFTKFLVDKDGHVVKRFS 153 (171)
T ss_pred cCCC-CccEeEEecCCC--------CCchHHHHHhhcCCCcccc-cceeeeEEEeECCCCcEEEeeC
Confidence 6653 34333332 442 5677888888776553322 2224677787666655555444
No 446
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=71.53 E-value=51 Score=26.38 Aligned_cols=88 Identities=11% Similarity=0.006 Sum_probs=64.4
Q ss_pred CCcEEEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc------ccCCCC-cCcEEEEEeCCCcccCccc
Q 007850 452 SKDVLLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH------HRAKSD-GFPTILFFPAGNKSFDPIN 524 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~------~~~~i~-~~Pt~~~~~~~~~~~~~~~ 524 (587)
+...+|-|--+-.+.-..+.+.++++|+....+.++.++-||-+.=.. ..|+|. +-|.|=+..-... ..+.
T Consensus 20 ~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV~vtda--dSvW 97 (120)
T cd03074 20 DGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVVNVTDA--DSVW 97 (120)
T ss_pred CCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeEecccc--ccee
Confidence 466788888889999999999999999999988899999999765332 234443 3488777754433 1223
Q ss_pred cc--c---ccCHHHHHHHHHhh
Q 007850 525 VD--V---DRTVVALYKFLKKN 541 (587)
Q Consensus 525 ~~--g---~~~~~~l~~~i~~~ 541 (587)
+. + ..+.++|..||+..
T Consensus 98 ~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 98 MEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred EecccccccCcHHHHHHHHHhh
Confidence 32 3 36889999999864
No 447
>PRK13792 lysozyme inhibitor; Provisional
Probab=71.50 E-value=2.4 Score=35.16 Aligned_cols=24 Identities=13% Similarity=0.212 Sum_probs=15.4
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhhc
Q 007850 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~~~ 25 (587)
||+. ++++++.++++|+||++...
T Consensus 1 mk~~-l~~ll~~~~~lLsaCs~~~~ 24 (127)
T PRK13792 1 MKKA-LWLLLAAVPVVLVACGGSDD 24 (127)
T ss_pred ChhH-HHHHHHHHHhheecccCCCC
Confidence 6655 44455556677999976543
No 448
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=70.40 E-value=1e+02 Score=29.58 Aligned_cols=77 Identities=14% Similarity=0.132 Sum_probs=50.0
Q ss_pred CCCCeEEcChhhHHHHHhCCCeEEEEEECCC-Chh-hhhhhHHHHHHHHHhhhcCC-cEEEEEEeCCCcHHHHHH----c
Q 007850 91 DDKDVVVLKERNFSDVIENNKFVMVEFYAPW-CGH-CQALAPEYAAAATELKSANE-SVVLAKVDATEENELAHE----Y 163 (587)
Q Consensus 91 ~~~~v~~l~~~~~~~~~~~~~~~~v~f~a~w-C~~-C~~~~p~~~~~~~~~~~~~~-~v~~~~vd~~~~~~l~~~----~ 163 (587)
+......|++.+-+-+-.=.+++-|.+|.+- -+. -....+.+.++.++|...+. ++.+-.||-+.++...++ +
T Consensus 5 T~~k~ysLS~~T~~~L~~L~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~ 84 (271)
T PF09822_consen 5 TANKRYSLSDQTKKVLKSLDEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEY 84 (271)
T ss_pred CCCCCccCCHHHHHHHHhCCCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhc
Confidence 4455667777766655544556666655553 222 35566677777777776655 799999998777666555 8
Q ss_pred CCCC
Q 007850 164 DVQG 167 (587)
Q Consensus 164 ~i~~ 167 (587)
||..
T Consensus 85 Gi~~ 88 (271)
T PF09822_consen 85 GIQP 88 (271)
T ss_pred CCCc
Confidence 8876
No 449
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=70.37 E-value=8.5 Score=33.16 Aligned_cols=53 Identities=8% Similarity=0.191 Sum_probs=33.1
Q ss_pred EEEEeCC------CChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c---c-cCCC----CcCcEEEEEeCCCc
Q 007850 456 LLEIYAP------WCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H---H-RAKS----DGFPTILFFPAGNK 518 (587)
Q Consensus 456 ~v~f~~~------~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~---~-~~~i----~~~Pt~~~~~~~~~ 518 (587)
||.|+++ +|++|++++..|+.. .+.+-.+|++.+. . . ..+. ..+|.+.+ +|+.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~--------~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI--~G~~ 70 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF--------RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV--DGRY 70 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC--------CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE--CCEE
Confidence 4567777 999999999988864 2445556665432 1 1 1222 57888664 5543
No 450
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=70.13 E-value=4.4 Score=27.55 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=15.1
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAKS 24 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~~ 24 (587)
||+-...+++++.++.|+||+..+
T Consensus 1 mk~~~~s~~ala~l~sLA~CG~KG 24 (58)
T COG5567 1 MKNVFKSLLALATLFSLAGCGLKG 24 (58)
T ss_pred ChhHHHHHHHHHHHHHHHhcccCC
Confidence 444444445555667899998765
No 451
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=70.03 E-value=5.2 Score=35.77 Aligned_cols=33 Identities=24% Similarity=0.448 Sum_probs=25.2
Q ss_pred EEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEE
Q 007850 458 EIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIA 490 (587)
Q Consensus 458 ~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~ 490 (587)
+|..|.|+.|-.+.|.|.++...++....+.++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i 34 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFI 34 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEE
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEE
Confidence 699999999999999999999999875444444
No 452
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=69.61 E-value=8.7 Score=33.50 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCcEEEEEeCCCChhhhhh-hHHHHHHHHHhcCCCcEEEEEEeCCc
Q 007850 452 SKDVLLEIYAPWCGHCQAF-EPTYNKLAKHLRGVDSIVIAKMDGTT 496 (587)
Q Consensus 452 ~~~v~v~f~~~~C~~C~~~-~~~~~~~~~~~~~~~~~~~~~id~~~ 496 (587)
+..+|++|.+.||+.|... .+.|.+....+....-..++.+..+.
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~ 75 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVND 75 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCC
Confidence 3455666667799999998 99999999998754311345555544
No 453
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=68.91 E-value=19 Score=32.05 Aligned_cols=60 Identities=15% Similarity=0.088 Sum_probs=39.4
Q ss_pred eEEEcCcchhHHhhcCCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhcCC-CcEEEEEEeCCc
Q 007850 436 VKIVVGNNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLRGV-DSIVIAKMDGTT 496 (587)
Q Consensus 436 ~~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~-C~~~~~~~~~~~~~~~~~-~~~~~~~id~~~ 496 (587)
+..-+|..|...- -.++.++|.|.-+.|+. |-.+...+.++.+.+... .++.++.|.+++
T Consensus 37 L~d~~G~~~~~~~-~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP 98 (174)
T PF02630_consen 37 LTDQDGKTVTLDD-LKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDP 98 (174)
T ss_dssp EEETTSSEEEGGG-GTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESST
T ss_pred EEcCCCCEecHHH-hCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCC
Confidence 4444555555432 25889999998888965 998888888888877643 345555454443
No 454
>PHA03075 glutaredoxin-like protein; Provisional
Probab=68.57 E-value=8.9 Score=30.89 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=27.7
Q ss_pred CeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeC
Q 007850 111 KFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDA 153 (587)
Q Consensus 111 ~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~ 153 (587)
|.+++.|..|.|+-|......+.++.. ...+..||.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~led-------eY~ilrVNI 37 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELED-------EYDILRVNI 37 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhc-------cccEEEEEe
Confidence 568999999999999999888865544 345666663
No 455
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=68.28 E-value=9.8 Score=27.93 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH----------------HHHHHcCCCCCcEEEEEeCC
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----------------ELAHEYDVQGFPTIYFFVDG 177 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----------------~l~~~~~i~~~Pt~~~~~~g 177 (587)
++|++--||.|..+..+|+++. +.+-.|++..+. +-.+..|--++|.+.+ .+|
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~---------v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~ 73 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLN---------VDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDG 73 (85)
T ss_pred eeeccccCcchHHHHHHHHHcC---------CCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCC
Confidence 6899999999998888877653 333345554331 1234456668998854 444
No 456
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=68.00 E-value=22 Score=25.88 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=33.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC----cHHHHHHcCCCCCcEEEE
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIYF 173 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~~ 173 (587)
..|+.++|++|++.+-.+.... ..+....++... .+.+.+...-..+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~-------l~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKG-------IDVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcC-------CCceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 4678889999999987766542 234445555422 234555555668899854
No 457
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=67.90 E-value=4.3 Score=33.10 Aligned_cols=81 Identities=14% Similarity=0.244 Sum_probs=44.8
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccc---c-CCCCcCcEEEEEeCCCcccCcccccc---cc
Q 007850 457 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH---R-AKSDGFPTILFFPAGNKSFDPINVDV---DR 529 (587)
Q Consensus 457 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~-~~i~~~Pt~~~~~~~~~~~~~~~~~g---~~ 529 (587)
..|+.++|+.|++....|++- + ..+.+.++..+..... . ++..+.|..-++.......+.....+ ..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~-i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~ 75 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----G-VDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFNTSGKSYRELGLKDKLPSL 75 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----C-CceEEecccCCcccHHHHHHHHHHcCCCHHHHHhcCCchHHhCCcccccccC
Confidence 578999999999999888772 2 2344444443332221 1 23334565555543333222112221 24
Q ss_pred CHHHHHHHHHhhCC
Q 007850 530 TVVALYKFLKKNAS 543 (587)
Q Consensus 530 ~~~~l~~~i~~~~~ 543 (587)
+.++++++|.++-.
T Consensus 76 s~~e~~~~l~~~p~ 89 (111)
T cd03036 76 SEEEALELLSSDGM 89 (111)
T ss_pred CHHHHHHHHHhCcC
Confidence 66788888887654
No 458
>PF13627 LPAM_2: Prokaryotic lipoprotein-attachment site
Probab=67.87 E-value=4.6 Score=22.58 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=10.6
Q ss_pred HHHHHHHHhhhhhhhh
Q 007850 9 LSLTILLLFSPALAKS 24 (587)
Q Consensus 9 ~~~~~~l~~~~~~~~~ 24 (587)
++++++++++||+..+
T Consensus 4 ~~~~~~~~LsgCG~KG 19 (24)
T PF13627_consen 4 LLLALALALSGCGQKG 19 (24)
T ss_pred HHHHHHHHHHhcccCC
Confidence 3344567789997654
No 459
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=67.36 E-value=12 Score=31.36 Aligned_cols=43 Identities=12% Similarity=0.276 Sum_probs=34.1
Q ss_pred cHHHHHHcCCCCCcEEEEEeCCe------------eeEeecCCCHHHHHHHHHHh
Q 007850 156 ENELAHEYDVQGFPTIYFFVDGQ------------HKAYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 156 ~~~l~~~~~i~~~Pt~~~~~~g~------------~~~~~g~~~~~~l~~~i~~~ 198 (587)
+|.+-++|+|+.+|++++..++. .....|..+.+.-.+.+.+.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~~ALe~ia~~ 114 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLKGALEKMAQD 114 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHHHHHHHHHHh
Confidence 58999999999999999998663 56677888876666666543
No 460
>PRK11548 outer membrane biogenesis protein BamE; Provisional
Probab=67.24 E-value=4.2 Score=33.30 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=16.0
Q ss_pred CcchhHHHHHHHHHHHhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALA 22 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~ 22 (587)
|+++.+++++++++++|+||+.
T Consensus 1 m~~~~~~~~~~~~~~~LsgCs~ 22 (113)
T PRK11548 1 MRCKTLTAAAAVLLMLTAGCST 22 (113)
T ss_pred CcchHHHHHHHHHHHHHcccCC
Confidence 7777666666666778899964
No 461
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=67.11 E-value=5.4 Score=33.68 Aligned_cols=22 Identities=14% Similarity=0.318 Sum_probs=18.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKL 477 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~ 477 (587)
+..|+.++|+.|++....|++-
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~ 23 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5679999999999988877663
No 462
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=67.03 E-value=16 Score=25.90 Aligned_cols=52 Identities=15% Similarity=0.098 Sum_probs=32.3
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH--HHHHHcCCCCCcEEEE
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN--ELAHEYDVQGFPTIYF 173 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~--~l~~~~~i~~~Pt~~~ 173 (587)
..|+.++|+.|++..-.+.... ..+....++..... .+....+-..+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKG-------LPYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcC-------CCcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 3578889999998877666542 23455555543332 2444556678897743
No 463
>PHA03075 glutaredoxin-like protein; Provisional
Probab=66.07 E-value=6.1 Score=31.80 Aligned_cols=30 Identities=20% Similarity=0.482 Sum_probs=25.9
Q ss_pred CcEEEEEeCCCChhhhhhhHHHHHHHHHhc
Q 007850 453 KDVLLEIYAPWCGHCQAFEPTYNKLAKHLR 482 (587)
Q Consensus 453 ~~v~v~f~~~~C~~C~~~~~~~~~~~~~~~ 482 (587)
+.+++.|.-|.|+-|+.....+.++...|.
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 578999999999999999999977776653
No 464
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=66.02 E-value=5.5 Score=32.05 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=23.0
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE 155 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (587)
..|+.++|+.|++....|.+. ++.+-.+|..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH---------GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCCcEEEeecc
Confidence 578999999999998777652 35555566544
No 465
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=65.52 E-value=11 Score=31.68 Aligned_cols=35 Identities=11% Similarity=0.268 Sum_probs=24.3
Q ss_pred EEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH
Q 007850 114 MVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (587)
Q Consensus 114 ~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (587)
+..|+.+||+.|++....|.+- ++.+-.+|..+++
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~---------gi~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH---------DIPFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc---------CCCcEEeeccCCh
Confidence 5678999999999987665431 3566666665543
No 466
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=65.50 E-value=22 Score=25.83 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=36.8
Q ss_pred EEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHH
Q 007850 116 EFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWI 195 (587)
Q Consensus 116 ~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i 195 (587)
.++.++|++|++.+-.+... + ..+....++-.......+..+-..+|++. ..+|.. -.....|.+|+
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~-----g--l~~~~~~~~~~~~~~~~~~~~~~~vP~L~-~~~~~~-----l~es~aI~~yL 69 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLK-----N--IPVEQIILQNDDEATPIRMIGAKQVPILE-KDDGSF-----MAESLDIVAFI 69 (71)
T ss_pred eEecCCCcHhHHHHHHHHHc-----C--CCeEEEECCCCchHHHHHhcCCCccCEEE-eCCCeE-----eehHHHHHHHH
Confidence 56788999999887666543 2 23444455543333333344455788873 233532 12345555555
No 467
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=65.48 E-value=13 Score=29.98 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=37.6
Q ss_pred CCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC
Q 007850 109 NNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE 155 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~ 155 (587)
+|+++||.=-|+-|+.-. -...|+++.+++++. ++.++..=|..
T Consensus 20 ~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~--gl~ILaFPcnq 63 (108)
T PF00255_consen 20 KGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDK--GLEILAFPCNQ 63 (108)
T ss_dssp TTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGG--TEEEEEEEBST
T ss_pred CCCEEEEEecccccCCcc-ccHHHHHHHHHHhcC--CeEEEeeehHH
Confidence 688988888899999998 667999999999873 58888888864
No 468
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=64.79 E-value=23 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.307 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEeC
Q 007850 127 ALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFVD 176 (587)
Q Consensus 127 ~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~ 176 (587)
.+.+....+.+-....... .+..-++.+-++|+|..+|++++.++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~-----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC-----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC-----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 5666666666555442212 22223589999999999999999987
No 469
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=63.83 E-value=12 Score=30.82 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=25.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN 157 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~ 157 (587)
..|+.++|+.|++....|.+- ++.+-.+|..+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~ 35 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN---------GIEYQFIDIGEDG 35 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCceEEEecCCCh
Confidence 468899999999998777651 3666677776654
No 470
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=63.80 E-value=20 Score=25.28 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=30.6
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCcccc----ccCCCCcCcEEEE
Q 007850 457 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEH----HRAKSDGFPTILF 512 (587)
Q Consensus 457 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~----~~~~i~~~Pt~~~ 512 (587)
.+|+.++|+.|++.+-.+....- .+....++...... +......+|++..
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i------~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL------PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC------CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 36788999999988877776522 24444454432221 2345668898764
No 471
>COG3417 FlgN Collagen-binding surface adhesin SpaP (antigen I/II family) [General function prediction only]
Probab=62.85 E-value=5.7 Score=35.14 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.4
Q ss_pred CcchhHHHHHHHHHHHhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALA 22 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~ 22 (587)
|.|.+++..+++++|+|+||.+
T Consensus 1 mtk~k~~~~il~~al~l~GCs~ 22 (200)
T COG3417 1 MTKMKIYASILLLALFLSGCSS 22 (200)
T ss_pred CchHHHHHHHHHHHHHHhhccc
Confidence 7667777777778899999975
No 472
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=62.82 E-value=7 Score=31.50 Aligned_cols=33 Identities=12% Similarity=0.065 Sum_probs=23.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE 156 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~ 156 (587)
..|+.+||+.|+.....|.+- ++.+-.+|..++
T Consensus 2 ~iy~~~~C~~crka~~~L~~~---------~i~~~~~di~~~ 34 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR---------GVAYTFHDYRKD 34 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc---------CCCeEEEecccC
Confidence 578999999999987766542 355555665444
No 473
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=62.55 E-value=49 Score=29.12 Aligned_cols=90 Identities=21% Similarity=0.401 Sum_probs=59.0
Q ss_pred CCCeEEEEEE-CCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCC--------------------------CcHHHHH
Q 007850 109 NNKFVMVEFY-APWCGHCQALAPEYAAAATELKSANESVVLAKVDAT--------------------------EENELAH 161 (587)
Q Consensus 109 ~~~~~~v~f~-a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~--------------------------~~~~l~~ 161 (587)
.++++++.|| ..+---|-.+.-.|...+.++...+..|..+.+|.. .+.++|+
T Consensus 32 ~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~~Isr 111 (196)
T KOG0852|consen 32 KGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNHEISR 111 (196)
T ss_pred cccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccchhhHH
Confidence 5788888887 445556667888899999999887666666666642 2348899
Q ss_pred HcCCC----CCc--EEEEEe-CCeee-----EeecCCCHHHHHHHHHHh
Q 007850 162 EYDVQ----GFP--TIYFFV-DGQHK-----AYNGGRTKDAIVTWIKKK 198 (587)
Q Consensus 162 ~~~i~----~~P--t~~~~~-~g~~~-----~~~g~~~~~~l~~~i~~~ 198 (587)
.|||- +.+ -++++. +|... ...-.++.++..+.++..
T Consensus 112 dyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 112 DYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred hcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 99874 343 455554 66221 123456777777666543
No 474
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=62.39 E-value=86 Score=31.72 Aligned_cols=89 Identities=20% Similarity=0.264 Sum_probs=59.2
Q ss_pred CCCeEEEEEECCCChhhhhhh-HHHH-HHHHHhhhcCCcEEEEEEeCCCc--HHHHHHcCCCCCcEEEEEe-CC-eeeEe
Q 007850 109 NNKFVMVEFYAPWCGHCQALA-PEYA-AAATELKSANESVVLAKVDATEE--NELAHEYDVQGFPTIYFFV-DG-QHKAY 182 (587)
Q Consensus 109 ~~~~~~v~f~a~wC~~C~~~~-p~~~-~~~~~~~~~~~~v~~~~vd~~~~--~~l~~~~~i~~~Pt~~~~~-~g-~~~~~ 182 (587)
.++-+||.|-+.--.....+. -.|. ......-. ..+..+.|+.... ..+..-|.+..+|+++||. .| .....
T Consensus 17 ~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls--~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevi 94 (506)
T KOG2507|consen 17 GKKALFVVYISGDDEESDKLNRLTWTDASVSDSLS--KYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVI 94 (506)
T ss_pred cCCeEEEEEEecCchHhhHHhhccchhhhhhhhhh--cceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEe
Confidence 456677777777666666665 2333 22222211 2466666665432 4567778899999999996 77 55778
Q ss_pred ecCCCHHHHHHHHHHhc
Q 007850 183 NGGRTKDAIVTWIKKKI 199 (587)
Q Consensus 183 ~g~~~~~~l~~~i~~~~ 199 (587)
.|....++|..-|.+..
T Consensus 95 tg~v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 95 TGFVTADELASSIEKVW 111 (506)
T ss_pred eccccHHHHHHHHHHHH
Confidence 88889999998887764
No 475
>COG4594 FecB ABC-type Fe3+-citrate transport system, periplasmic component [Inorganic ion transport and metabolism]
Probab=61.78 E-value=6.4 Score=36.61 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=16.0
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhhc
Q 007850 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~~~ 25 (587)
|++..+++.+++++|+.+||+++..
T Consensus 3 ~~~~~~i~~lll~lllva~C~~s~~ 27 (310)
T COG4594 3 MKKTAIILTLLLLLLLVAACSSSDN 27 (310)
T ss_pred chhhHHHHHHHHHHHHHHHhcCcCc
Confidence 3444555555666677899977643
No 476
>PRK12559 transcriptional regulator Spx; Provisional
Probab=60.63 E-value=8.4 Score=32.48 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=18.4
Q ss_pred EEEEeCCCChhhhhhhHHHHHH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKL 477 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~ 477 (587)
+..|+.++|+.|++....|++-
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~ 23 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN 23 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5689999999999988777763
No 477
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=60.23 E-value=8.9 Score=30.14 Aligned_cols=10 Identities=40% Similarity=0.693 Sum_probs=4.7
Q ss_pred CcchhHHHHH
Q 007850 1 MSTRYILLLS 10 (587)
Q Consensus 1 M~~~~~l~~~ 10 (587)
|.-|.+|||.
T Consensus 1 MaSK~~llL~ 10 (95)
T PF07172_consen 1 MASKAFLLLG 10 (95)
T ss_pred CchhHHHHHH
Confidence 6544444433
No 478
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=60.09 E-value=7.1 Score=32.15 Aligned_cols=80 Identities=10% Similarity=0.064 Sum_probs=42.3
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccccC----CCCcCcEEEEE-eCCCcccCcccc---ccc
Q 007850 457 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRA----KSDGFPTILFF-PAGNKSFDPINV---DVD 528 (587)
Q Consensus 457 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~i~~~Pt~~~~-~~~~~~~~~~~~---~g~ 528 (587)
..|+.++|+.|++....|++- + ..+.++++..+......+ ...+...--++ +.+... +.... ...
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~-i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~-k~l~~~~~~~~ 74 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEAN-----G-IEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSY-RALNTSNTFLD 74 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----C-CceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcch-hhCCchhhccc
Confidence 468999999999999888872 2 134444443322222111 12222122233 333322 22111 135
Q ss_pred cCHHHHHHHHHhhCC
Q 007850 529 RTVVALYKFLKKNAS 543 (587)
Q Consensus 529 ~~~~~l~~~i~~~~~ 543 (587)
.+.++++++|.++-.
T Consensus 75 ls~~e~~~~i~~~p~ 89 (117)
T TIGR01617 75 LSDKEALELLAEDPA 89 (117)
T ss_pred CCHHHHHHHHHhCcc
Confidence 677889999988755
No 479
>PRK11372 lysozyme inhibitor; Provisional
Probab=59.99 E-value=6.5 Score=31.84 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=13.9
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~ 23 (587)
|.||.+++++ ++++|+||++.
T Consensus 1 ~~mk~ll~~~--~~~lL~gCs~~ 21 (109)
T PRK11372 1 MSMKKLLIIC--LPVLLTGCSAY 21 (109)
T ss_pred CchHHHHHHH--HHHHHHHhcCC
Confidence 7788865443 44557999764
No 480
>PRK11616 hypothetical protein; Provisional
Probab=59.06 E-value=7.9 Score=30.88 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=16.0
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~ 23 (587)
||+..+.+++.+.+++++||++-
T Consensus 1 ~~~~~~~~~~~~~~llLsGCgSi 23 (109)
T PRK11616 1 IRNVLLAFMICSGMLLLSGCSSV 23 (109)
T ss_pred CcchhHHHHHHHHHHHhcccHhh
Confidence 45555555666667889999764
No 481
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=58.08 E-value=26 Score=33.05 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=37.3
Q ss_pred hCCCeEEEEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEEEEe
Q 007850 108 ENNKFVMVEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 108 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~ 175 (587)
.+||+.++...+-|||.|-.++=.|-.+...+.. +.+ .-+..+. .-.-..+|++.|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn----~~l-~~~~S~~-----~d~~pn~Ptl~F~~ 113 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN----FSL-EYHYSDP-----YDNYPNTPTLIFNN 113 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC----eee-EEeecCc-----ccCCCCCCeEEEec
Confidence 4789999999999999999987655555544433 422 1111111 11235789998885
No 482
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=57.66 E-value=4.7 Score=30.70 Aligned_cols=54 Identities=20% Similarity=0.204 Sum_probs=43.6
Q ss_pred EECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcHHHHHHcCCCCCcEEE
Q 007850 117 FYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEENELAHEYDVQGFPTIY 172 (587)
Q Consensus 117 f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~ 172 (587)
|=+..-+.+......+..+.+..-+ ..+.+-.||..+++.+++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~--~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLG--GRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCT--TTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCC--CcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 4445556677888888888876543 47999999999999999999999999975
No 483
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=57.32 E-value=7.2 Score=33.92 Aligned_cols=21 Identities=29% Similarity=0.278 Sum_probs=13.7
Q ss_pred CcchhHHHHHHHHHHHhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALA 22 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~ 22 (587)
||+.+++ ++|..+|+|+||..
T Consensus 1 MK~~~~l-i~l~~~LlL~GCAg 21 (171)
T PRK13733 1 MKQISLL-IPLLGTLLLSGCAG 21 (171)
T ss_pred CchhhHH-HHHHHHHHhccccC
Confidence 7655543 44456678999974
No 484
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=57.11 E-value=23 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHhcCCCcEEEEEEeCCccccccCCCCcCcEEEEEeC
Q 007850 469 AFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHHRAKSDGFPTILFFPA 515 (587)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~i~~~Pt~~~~~~ 515 (587)
.+.+.+..+.+........ +.+.++.+..++|+|+.+|++++-++
T Consensus 36 ~~~~t~~~~~~l~~~~~~~--~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPC--PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCC--cceeEChhHHhhCCceEcCEEEEEcC
Confidence 4555555555544432212 67777888899999999999999877
No 485
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=56.92 E-value=10 Score=30.91 Aligned_cols=52 Identities=25% Similarity=0.366 Sum_probs=31.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCcH----HHHHHcCCCCCcEEEEEe
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEEN----ELAHEYDVQGFPTIYFFV 175 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~~----~l~~~~~i~~~Pt~~~~~ 175 (587)
..|+.++|+.|++....|++- ++.|-.+|..+++ ++..-++..+.|..-+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~---------~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH---------GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc---------CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 468899999999998777651 3566666665442 233323333445544554
No 486
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=56.87 E-value=11 Score=30.96 Aligned_cols=82 Identities=11% Similarity=0.151 Sum_probs=43.8
Q ss_pred EEEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccccc---c-CCCCcCcEEEEEeCCCcccCccccc-cccC
Q 007850 456 LLEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNEHH---R-AKSDGFPTILFFPAGNKSFDPINVD-VDRT 530 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~-~~i~~~Pt~~~~~~~~~~~~~~~~~-g~~~ 530 (587)
+.+|+.++|+.|++....|++. + ..+.+.++..+..... . +...+.|.--++.......+..... ...+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----g-i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~~~~~~ls 75 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----Q-IPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLNIDIDELS 75 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----C-CceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcCCCcccCC
Confidence 4578999999999988888773 2 2355555443322221 1 1222234333443333321211111 2456
Q ss_pred HHHHHHHHHhhCC
Q 007850 531 VVALYKFLKKNAS 543 (587)
Q Consensus 531 ~~~l~~~i~~~~~ 543 (587)
.++++++|.++-.
T Consensus 76 ~~e~i~~l~~~p~ 88 (115)
T cd03032 76 LSELIRLISEHPS 88 (115)
T ss_pred HHHHHHHHHhChh
Confidence 7888888887654
No 487
>COG3065 Slp Starvation-inducible outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=56.80 E-value=7.1 Score=34.10 Aligned_cols=22 Identities=18% Similarity=-0.014 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHhhhhhhh
Q 007850 2 STRYILLLSLTILLLFSPALAK 23 (587)
Q Consensus 2 ~~~~~l~~~~~~~l~~~~~~~~ 23 (587)
||.++-+++.+++|+|+||.+.
T Consensus 5 m~~~~~~l~~~laflLsgC~ti 26 (191)
T COG3065 5 MNMKKGALIGTLAFLLSGCVTI 26 (191)
T ss_pred hhhHHHHHHHHHHHHHhhcccC
Confidence 3434444555666889999764
No 488
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=56.71 E-value=21 Score=31.92 Aligned_cols=43 Identities=21% Similarity=0.380 Sum_probs=31.9
Q ss_pred HHHHHHcCCCCCcEEEEEeCCeeeEe-ec--CCCHHHHHHHHHHhc
Q 007850 157 NELAHEYDVQGFPTIYFFVDGQHKAY-NG--GRTKDAIVTWIKKKI 199 (587)
Q Consensus 157 ~~l~~~~~i~~~Pt~~~~~~g~~~~~-~g--~~~~~~l~~~i~~~~ 199 (587)
..+++++++.++||+.+-++|+.... .| ..+.+.|..++...+
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~~~~l~~g~y~~~~~~~~arl~~~~ 209 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGTMYVLGTGAYFGSPDAWLARLAQRL 209 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCceEeccCCcccCCcHHHHHHHHHHH
Confidence 47889999999999999999954333 34 235678887776654
No 489
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=55.27 E-value=25 Score=32.55 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=33.6
Q ss_pred HHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHHHHHHhcCCC
Q 007850 158 ELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVTWIKKKIGPG 202 (587)
Q Consensus 158 ~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~~i~~~~~~~ 202 (587)
..++++||+++|++++ ...+...|..+.+.+..-|.+.+...
T Consensus 175 ~~A~e~gI~gVP~fv~---d~~~~V~Gaq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 175 AAAQEMGIRGVPTFVF---DGKYAVSGAQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHCCCccCceEEE---cCcEeecCCCCHHHHHHHHHHHHhcc
Confidence 4567899999999988 33345679999999999999887544
No 490
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=55.24 E-value=17 Score=39.27 Aligned_cols=78 Identities=23% Similarity=0.404 Sum_probs=53.8
Q ss_pred EEcCcchhHHhhcCCCcEEEEEeCCCChhhhhhhHH-H--HHHHHHhcCCCcEEEEEEeCCccc-c--------ccC-CC
Q 007850 438 IVVGNNFDEIVLDESKDVLLEIYAPWCGHCQAFEPT-Y--NKLAKHLRGVDSIVIAKMDGTTNE-H--------HRA-KS 504 (587)
Q Consensus 438 ~l~~~~f~~~v~~~~~~v~v~f~~~~C~~C~~~~~~-~--~~~~~~~~~~~~~~~~~id~~~~~-~--------~~~-~i 504 (587)
.-..+.|.+. ...++|++|-...+||..|..|... | .++|+.++. .++-++||-+... + +-+ +-
T Consensus 30 pW~~eAf~~A-~~edkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~--~FV~IKVDREERPDvD~~Ym~~~q~~tG~ 106 (667)
T COG1331 30 PWGEEAFAKA-KEEDKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNE--NFVPVKVDREERPDVDSLYMNASQAITGQ 106 (667)
T ss_pred ccCHHHHHHH-HHhCCCEEEEeccccccchHHHhhhcCCCHHHHHHHHh--CceeeeEChhhccCHHHHHHHHHHHhccC
Confidence 4556677775 4679999999999999999988753 3 346666655 5888888886643 2 111 23
Q ss_pred CcCcEEEEE-eCCCc
Q 007850 505 DGFPTILFF-PAGNK 518 (587)
Q Consensus 505 ~~~Pt~~~~-~~~~~ 518 (587)
-+.|..+|. |+|+.
T Consensus 107 GGWPLtVfLTPd~kP 121 (667)
T COG1331 107 GGWPLTVFLTPDGKP 121 (667)
T ss_pred CCCceeEEECCCCce
Confidence 489965555 76655
No 491
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=55.19 E-value=10 Score=29.68 Aligned_cols=22 Identities=14% Similarity=0.081 Sum_probs=12.2
Q ss_pred CcchhHHHHHHHHHHHhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAK 23 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~ 23 (587)
|++-++ ..+.+.+++++||.+.
T Consensus 1 M~k~l~-sal~~~~~L~~GCAst 22 (96)
T PF11839_consen 1 MKKLLL-SALALAALLLAGCAST 22 (96)
T ss_pred CchHHH-HHHHHHHHHHhHccCC
Confidence 444443 3333346778899654
No 492
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=54.36 E-value=31 Score=31.74 Aligned_cols=61 Identities=23% Similarity=0.280 Sum_probs=42.3
Q ss_pred EEEcCcchhHHhhcCCCcEEEEEeCCCChh-hhhhhHHHHHHHHHhc-CC-C--cEEEEEEeCCccc
Q 007850 437 KIVVGNNFDEIVLDESKDVLLEIYAPWCGH-CQAFEPTYNKLAKHLR-GV-D--SIVIAKMDGTTNE 498 (587)
Q Consensus 437 ~~l~~~~f~~~v~~~~~~v~v~f~~~~C~~-C~~~~~~~~~~~~~~~-~~-~--~~~~~~id~~~~~ 498 (587)
..-.|+.|...-+ .+++++|+|.-+.|+. |-.+...+..+.+.+. .. . .+.++.+|-+...
T Consensus 53 ~d~~G~~~~~~~l-~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDt 118 (207)
T COG1999 53 TDQDGKPFTLKDL-KGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDT 118 (207)
T ss_pred ecCCCCEeecccc-CCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCC
Confidence 3344555554332 6899999998888887 9999998888888877 32 2 4667777765543
No 493
>PF12262 Lipase_bact_N: Bacterial virulence factor lipase N-terminal
Probab=54.25 E-value=9.7 Score=36.44 Aligned_cols=24 Identities=21% Similarity=0.137 Sum_probs=16.5
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhhc
Q 007850 1 MSTRYILLLSLTILLLFSPALAKSQ 25 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~~~ 25 (587)
|||. +++++++.+|+|+||+....
T Consensus 1 Mkk~-~l~~~l~sal~L~GCg~~s~ 24 (268)
T PF12262_consen 1 MKKL-LLSSALASALGLAGCGGDSE 24 (268)
T ss_pred CchH-HHHHHHHHHHHeeecCCCcc
Confidence 5544 55666777888999986443
No 494
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=54.00 E-value=7.1 Score=19.84 Aligned_cols=6 Identities=33% Similarity=0.207 Sum_probs=2.5
Q ss_pred CcchhH
Q 007850 1 MSTRYI 6 (587)
Q Consensus 1 M~~~~~ 6 (587)
|||..+
T Consensus 1 MMk~vI 6 (19)
T PF13956_consen 1 MMKLVI 6 (19)
T ss_pred CceehH
Confidence 444433
No 495
>COG3017 LolB Outer membrane lipoprotein involved in outer membrane biogenesis [Cell envelope biogenesis, outer membrane]
Probab=53.58 E-value=9.1 Score=34.43 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=15.0
Q ss_pred CcchhHHHHHHHHHHHhhhhhhhh
Q 007850 1 MSTRYILLLSLTILLLFSPALAKS 24 (587)
Q Consensus 1 M~~~~~l~~~~~~~l~~~~~~~~~ 24 (587)
|+|+...+++.++.++|+||+...
T Consensus 3 ~~~~~~~~l~~~As~LL~aC~~~~ 26 (206)
T COG3017 3 MMKRLLFLLLALASLLLTACTLTA 26 (206)
T ss_pred hHHHHHHHHHHHHHHHHHhccCcC
Confidence 344444555556668889996554
No 496
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=53.13 E-value=60 Score=32.76 Aligned_cols=87 Identities=11% Similarity=0.029 Sum_probs=58.9
Q ss_pred cCCCcEEEEEeCCCChhhhhhh--HHHHHHHHHhcCCCcEEEEEEeCCcccccc----CCCCcCcEEEEE-eCCCcccCc
Q 007850 450 DESKDVLLEIYAPWCGHCQAFE--PTYNKLAKHLRGVDSIVIAKMDGTTNEHHR----AKSDGFPTILFF-PAGNKSFDP 522 (587)
Q Consensus 450 ~~~~~v~v~f~~~~C~~C~~~~--~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~i~~~Pt~~~~-~~~~~~~~~ 522 (587)
+.++.++|.|.+........|. -++.......- ...++.+.|+.....+.+ |.+-.+|.+.+. ..|..+.
T Consensus 16 K~kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~l-s~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLe-- 92 (506)
T KOG2507|consen 16 KGKKALFVVYISGDDEESDKLNRLTWTDASVSDSL-SKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLE-- 92 (506)
T ss_pred hcCCeEEEEEEecCchHhhHHhhccchhhhhhhhh-hcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeE--
Confidence 4567889999998888887777 23333332221 136888888888777744 467789998888 4565554
Q ss_pred cccccccCHHHHHHHHHh
Q 007850 523 INVDVDRTVVALYKFLKK 540 (587)
Q Consensus 523 ~~~~g~~~~~~l~~~i~~ 540 (587)
...|..+.++|..-|.+
T Consensus 93 -vitg~v~adeL~~~i~K 109 (506)
T KOG2507|consen 93 -VITGFVTADELASSIEK 109 (506)
T ss_pred -EeeccccHHHHHHHHHH
Confidence 67787777777665554
No 497
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=52.52 E-value=59 Score=23.59 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=33.1
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCC----cHHHHHHcCCCCCcEEE
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATE----ENELAHEYDVQGFPTIY 172 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~----~~~l~~~~~i~~~Pt~~ 172 (587)
..|+.++|+.|++.+-.+.... ..+....+|... .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~g-------i~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALG-------LELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcC-------CCCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 4688999999998776665432 245555566432 24555555566899984
No 498
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=51.93 E-value=23 Score=25.73 Aligned_cols=69 Identities=16% Similarity=0.108 Sum_probs=41.2
Q ss_pred EEEECCCChhhhhhhHHHHHHHHHhhhcCCcEEEEEEeCCCc-HHHHHHcCCCCCcEEEEEeCCeeeEeecCCCHHHHHH
Q 007850 115 VEFYAPWCGHCQALAPEYAAAATELKSANESVVLAKVDATEE-NELAHEYDVQGFPTIYFFVDGQHKAYNGGRTKDAIVT 193 (587)
Q Consensus 115 v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~v~~~~vd~~~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~g~~~~~~l~~ 193 (587)
..|+.++|+.|++..-.+.... ..+....+|.... +.+.+......+|++. .+|.. ......|.+
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~g-------i~~~~~~v~~~~~~~~~~~~~p~~~vP~l~--~~~~~-----l~es~aI~~ 67 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKG-------VSVEIIDVDPDNPPEDLAELNPYGTVPTLV--DRDLV-----LYESRIIME 67 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcC-------CccEEEEcCCCCCCHHHHhhCCCCCCCEEE--ECCEE-----EEcHHHHHH
Confidence 4678899999999876654432 2345555554433 3455555566899763 34421 124566777
Q ss_pred HHHH
Q 007850 194 WIKK 197 (587)
Q Consensus 194 ~i~~ 197 (587)
|+.+
T Consensus 68 yL~~ 71 (73)
T cd03059 68 YLDE 71 (73)
T ss_pred HHHh
Confidence 7654
No 499
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=51.43 E-value=14 Score=31.12 Aligned_cols=21 Identities=14% Similarity=0.214 Sum_probs=17.5
Q ss_pred EEEEeCCCChhhhhhhHHHHH
Q 007850 456 LLEIYAPWCGHCQAFEPTYNK 476 (587)
Q Consensus 456 ~v~f~~~~C~~C~~~~~~~~~ 476 (587)
+..|+.++|+.|++....|++
T Consensus 2 i~iY~~~~C~~crkA~~~L~~ 22 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNA 22 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHH
Confidence 457899999999998877765
No 500
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=51.13 E-value=14 Score=26.91 Aligned_cols=50 Identities=4% Similarity=0.040 Sum_probs=30.7
Q ss_pred EEEeCCCChhhhhhhHHHHHHHHHhcCCCcEEEEEEeCCccc--c-ccCCCCcCcEEEE
Q 007850 457 LEIYAPWCGHCQAFEPTYNKLAKHLRGVDSIVIAKMDGTTNE--H-HRAKSDGFPTILF 512 (587)
Q Consensus 457 v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~--~-~~~~i~~~Pt~~~ 512 (587)
++|+.+||++|++.+-.+....- .+....+|..... . .......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl------~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI------TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC------CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 46889999999988777665432 3455566653221 1 1124568899853
Done!