Query 007851
Match_columns 587
No_of_seqs 513 out of 3043
Neff 6.4
Searched_HMMs 46136
Date Thu Mar 28 16:11:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007851.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007851hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2383 Predicted ATPase [Gene 100.0 3E-100 6E-105 789.4 30.3 439 34-578 23-462 (467)
2 PF03969 AFG1_ATPase: AFG1-lik 100.0 2.8E-88 6.1E-93 717.5 32.4 361 45-578 1-361 (362)
3 COG1485 Predicted ATPase [Gene 100.0 4.2E-88 9E-93 694.6 29.2 356 43-576 7-362 (367)
4 COG1126 GlnQ ABC-type polar am 99.9 3.5E-23 7.5E-28 201.9 12.0 148 173-331 25-196 (240)
5 COG2884 FtsE Predicted ATPase 99.9 9.2E-23 2E-27 195.1 11.1 148 173-330 25-196 (223)
6 COG1116 TauB ABC-type nitrate/ 99.9 1.7E-22 3.7E-27 201.6 9.3 147 173-336 26-196 (248)
7 COG3839 MalK ABC-type sugar tr 99.9 6.9E-22 1.5E-26 207.0 10.4 146 174-333 27-196 (338)
8 COG1118 CysA ABC-type sulfate/ 99.9 1.7E-21 3.6E-26 198.4 11.8 147 173-331 25-198 (345)
9 COG1136 SalX ABC-type antimicr 99.9 1.7E-21 3.6E-26 193.7 11.5 149 173-331 28-203 (226)
10 COG3842 PotA ABC-type spermidi 99.9 6.4E-22 1.4E-26 208.3 8.3 144 173-330 28-196 (352)
11 COG1127 Ttg2A ABC-type transpo 99.8 5.3E-21 1.2E-25 189.2 12.9 150 173-331 31-206 (263)
12 COG1135 AbcC ABC-type metal io 99.8 8.4E-21 1.8E-25 193.6 11.6 146 173-331 29-202 (339)
13 COG1131 CcmA ABC-type multidru 99.8 1.3E-20 2.8E-25 195.9 12.6 146 174-332 29-198 (293)
14 COG1120 FepC ABC-type cobalami 99.8 1.4E-20 3.1E-25 190.5 11.9 146 174-331 26-199 (258)
15 COG1117 PstB ABC-type phosphat 99.8 1.4E-20 3.1E-25 183.2 11.1 150 173-330 30-208 (253)
16 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 2.4E-20 5.3E-25 188.1 12.5 144 174-331 28-199 (254)
17 COG1125 OpuBA ABC-type proline 99.8 2.4E-20 5.3E-25 185.6 10.9 172 173-366 24-222 (309)
18 COG1122 CbiO ABC-type cobalt t 99.8 6.2E-20 1.4E-24 184.7 11.8 147 174-330 28-198 (235)
19 PRK13537 nodulation ABC transp 99.8 4.6E-20 1E-24 192.8 11.2 147 174-333 31-200 (306)
20 COG3638 ABC-type phosphate/pho 99.8 4.8E-19 1E-23 174.9 15.9 145 173-330 27-207 (258)
21 TIGR01188 drrA daunorubicin re 99.8 8.5E-20 1.8E-24 190.4 11.0 145 174-331 17-184 (302)
22 COG4555 NatA ABC-type Na+ tran 99.8 2.9E-19 6.2E-24 172.6 12.7 148 174-334 26-196 (245)
23 PRK11650 ugpC glycerol-3-phosp 99.8 1.2E-19 2.7E-24 193.4 11.2 144 174-331 28-195 (356)
24 TIGR02314 ABC_MetN D-methionin 99.8 1.2E-19 2.7E-24 192.4 10.9 148 174-331 29-201 (343)
25 cd03226 ABC_cobalt_CbiO_domain 99.8 1.6E-19 3.4E-24 177.5 10.9 144 174-331 24-186 (205)
26 PRK11432 fbpC ferric transport 99.8 1.1E-19 2.3E-24 193.5 9.9 144 174-331 30-197 (351)
27 PRK09452 potA putrescine/sperm 99.8 1.2E-19 2.5E-24 194.7 10.3 144 174-331 38-205 (375)
28 TIGR03265 PhnT2 putative 2-ami 99.8 9.8E-20 2.1E-24 193.9 9.6 144 174-331 28-195 (353)
29 TIGR00960 3a0501s02 Type II (G 99.8 3.3E-19 7.1E-24 176.5 12.6 149 174-331 27-198 (216)
30 cd03266 ABC_NatA_sodium_export 99.8 3.9E-19 8.5E-24 176.0 12.5 145 174-331 29-196 (218)
31 TIGR01166 cbiO cobalt transpor 99.8 2.9E-19 6.4E-24 173.5 10.9 149 174-331 16-187 (190)
32 PRK13536 nodulation factor exp 99.8 2.2E-19 4.8E-24 190.3 10.7 145 174-331 65-232 (340)
33 TIGR03258 PhnT 2-aminoethylpho 99.8 1.6E-19 3.5E-24 192.8 9.3 146 174-331 29-199 (362)
34 cd03268 ABC_BcrA_bacitracin_re 99.8 7.6E-19 1.7E-23 172.9 13.2 144 174-331 24-186 (208)
35 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 6.7E-19 1.4E-23 174.4 12.7 149 174-331 28-201 (218)
36 TIGR01186 proV glycine betaine 99.8 4.2E-19 9E-24 189.5 11.5 149 174-331 17-190 (363)
37 PRK11629 lolD lipoprotein tran 99.8 1.4E-18 2.9E-23 174.3 13.8 149 174-331 33-206 (233)
38 cd03225 ABC_cobalt_CbiO_domain 99.8 6.9E-19 1.5E-23 173.4 11.4 146 174-331 25-194 (211)
39 cd03269 ABC_putative_ATPase Th 99.8 2.2E-18 4.7E-23 169.9 14.3 142 174-331 24-188 (210)
40 cd03265 ABC_DrrA DrrA is the A 99.8 9E-19 2E-23 174.0 11.5 145 174-331 24-192 (220)
41 cd03292 ABC_FtsE_transporter F 99.8 1.2E-18 2.7E-23 171.9 12.1 149 174-331 25-196 (214)
42 TIGR01288 nodI ATP-binding ABC 99.8 1.1E-18 2.4E-23 182.1 11.8 145 174-331 28-195 (303)
43 cd03259 ABC_Carb_Solutes_like 99.8 9.7E-19 2.1E-23 172.8 10.7 144 174-331 24-191 (213)
44 COG1124 DppF ABC-type dipeptid 99.8 1.2E-18 2.6E-23 173.0 11.1 147 174-330 31-201 (252)
45 COG3840 ThiQ ABC-type thiamine 99.8 9.2E-19 2E-23 166.8 9.8 146 174-334 23-192 (231)
46 PRK10908 cell division protein 99.8 4E-18 8.6E-23 169.6 14.7 149 174-331 26-197 (222)
47 TIGR03608 L_ocin_972_ABC putat 99.8 2.6E-18 5.6E-23 168.6 13.1 150 174-331 22-194 (206)
48 PRK11607 potG putrescine trans 99.8 1.1E-18 2.4E-23 187.4 11.4 144 174-331 43-210 (377)
49 TIGR03522 GldA_ABC_ATP gliding 99.8 8.9E-19 1.9E-23 182.7 10.3 145 174-332 26-193 (301)
50 cd03293 ABC_NrtD_SsuB_transpor 99.8 1.7E-18 3.8E-23 171.9 11.8 141 174-331 28-192 (220)
51 cd03235 ABC_Metallic_Cations A 99.8 2.7E-18 5.8E-23 169.6 13.1 142 174-331 23-192 (213)
52 TIGR02211 LolD_lipo_ex lipopro 99.8 2.7E-18 5.9E-23 170.4 13.1 149 174-331 29-202 (221)
53 cd03261 ABC_Org_Solvent_Resist 99.8 2.5E-18 5.3E-23 172.5 12.9 148 174-331 24-197 (235)
54 cd03256 ABC_PhnC_transporter A 99.8 2.8E-18 6E-23 172.4 13.1 149 174-331 25-205 (241)
55 cd03218 ABC_YhbG The ABC trans 99.8 1.8E-18 4E-23 172.9 11.7 147 174-331 24-193 (232)
56 TIGR02673 FtsE cell division A 99.8 3.1E-18 6.7E-23 169.1 13.2 148 174-331 26-197 (214)
57 TIGR01189 ccmA heme ABC export 99.8 2.7E-18 5.9E-23 167.9 12.6 150 174-337 24-192 (198)
58 PRK11000 maltose/maltodextrin 99.8 1.4E-18 3.1E-23 186.2 11.5 144 174-331 27-194 (369)
59 cd03262 ABC_HisP_GlnQ_permease 99.8 1.9E-18 4.2E-23 170.3 11.6 147 174-331 24-195 (213)
60 cd03224 ABC_TM1139_LivF_branch 99.8 3.5E-18 7.7E-23 169.5 13.1 146 174-331 24-192 (222)
61 PRK13647 cbiO cobalt transport 99.8 2.2E-18 4.7E-23 177.4 11.8 146 174-331 29-198 (274)
62 PRK13538 cytochrome c biogenes 99.8 4.2E-18 9.1E-23 167.5 13.3 145 174-331 25-189 (204)
63 cd03301 ABC_MalK_N The N-termi 99.8 2E-18 4.3E-23 170.4 11.0 144 174-331 24-191 (213)
64 PRK11153 metN DL-methionine tr 99.8 2.6E-18 5.5E-23 182.5 12.5 148 174-331 29-201 (343)
65 PRK10851 sulfate/thiosulfate t 99.8 2.1E-18 4.4E-23 183.8 11.5 144 174-331 26-197 (353)
66 PRK13540 cytochrome c biogenes 99.8 4.3E-18 9.4E-23 166.9 12.9 145 174-331 25-187 (200)
67 PRK13650 cbiO cobalt transport 99.8 1.1E-18 2.4E-23 180.1 9.0 146 174-331 31-201 (279)
68 PRK13651 cobalt transporter AT 99.8 2.4E-18 5.1E-23 179.9 11.6 155 174-331 31-225 (305)
69 cd03258 ABC_MetN_methionine_tr 99.8 3.9E-18 8.4E-23 170.8 12.6 148 174-331 29-201 (233)
70 cd03296 ABC_CysA_sulfate_impor 99.8 4.8E-18 1E-22 171.0 13.0 144 174-331 26-197 (239)
71 cd03219 ABC_Mj1267_LivG_branch 99.8 4.1E-18 8.9E-23 170.7 12.4 146 174-331 24-203 (236)
72 PRK13635 cbiO cobalt transport 99.8 2.2E-18 4.7E-23 177.9 10.5 147 174-331 31-201 (279)
73 cd03298 ABC_ThiQ_thiamine_tran 99.8 4.4E-18 9.6E-23 167.8 12.2 144 174-331 22-189 (211)
74 cd03263 ABC_subfamily_A The AB 99.8 3.8E-18 8.3E-23 169.2 11.7 144 174-331 26-192 (220)
75 COG4525 TauB ABC-type taurine 99.8 1.6E-18 3.4E-23 166.7 8.6 141 173-330 28-193 (259)
76 cd03231 ABC_CcmA_heme_exporter 99.8 5.4E-18 1.2E-22 166.4 12.6 145 174-331 24-185 (201)
77 TIGR02315 ABC_phnC phosphonate 99.8 6E-18 1.3E-22 170.3 13.2 148 174-331 26-206 (243)
78 COG3845 ABC-type uncharacteriz 99.8 4.1E-18 8.8E-23 183.0 12.5 163 174-362 28-216 (501)
79 PRK13637 cbiO cobalt transport 99.8 1.6E-18 3.4E-23 179.6 9.1 149 174-331 31-205 (287)
80 COG0410 LivF ABC-type branched 99.8 6.8E-18 1.5E-22 166.6 12.6 145 174-330 27-196 (237)
81 PRK13641 cbiO cobalt transport 99.7 4.8E-18 1E-22 176.0 12.1 151 174-331 31-205 (287)
82 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 4.6E-18 1E-22 170.8 11.5 145 174-331 25-193 (236)
83 PRK13639 cbiO cobalt transport 99.7 5.3E-18 1.2E-22 174.6 12.2 149 174-331 26-197 (275)
84 PRK13643 cbiO cobalt transport 99.7 6.5E-18 1.4E-22 175.2 12.7 151 174-331 30-204 (288)
85 PRK13644 cbiO cobalt transport 99.7 5.7E-18 1.2E-22 174.3 12.1 148 174-331 26-196 (274)
86 PRK11248 tauB taurine transpor 99.7 7.1E-18 1.5E-22 171.9 12.6 141 174-331 25-189 (255)
87 PRK11247 ssuB aliphatic sulfon 99.7 9.3E-18 2E-22 171.4 13.4 141 174-331 36-194 (257)
88 PRK10070 glycine betaine trans 99.7 4.2E-18 9E-23 184.0 11.4 146 174-331 52-225 (400)
89 PRK09493 glnQ glutamine ABC tr 99.7 6E-18 1.3E-22 170.2 11.8 148 174-331 25-196 (240)
90 TIGR01277 thiQ thiamine ABC tr 99.7 1E-17 2.3E-22 165.6 13.2 144 174-331 22-189 (213)
91 PRK09536 btuD corrinoid ABC tr 99.7 4.6E-18 9.9E-23 183.8 11.5 146 174-331 27-199 (402)
92 PRK13633 cobalt transporter AT 99.7 4.6E-18 1E-22 175.5 11.0 148 174-331 34-205 (280)
93 PRK10584 putative ABC transpor 99.7 9.9E-18 2.1E-22 167.3 13.0 150 174-331 34-207 (228)
94 PRK11144 modC molybdate transp 99.7 6.7E-18 1.4E-22 179.9 12.5 150 174-331 22-189 (352)
95 PRK13636 cbiO cobalt transport 99.7 4.4E-18 9.5E-23 176.0 10.7 148 174-331 30-202 (283)
96 cd03295 ABC_OpuCA_Osmoprotecti 99.7 9E-18 1.9E-22 169.3 12.7 146 174-331 25-196 (242)
97 TIGR02142 modC_ABC molybdenum 99.7 4.2E-18 9.1E-23 181.6 10.7 150 174-331 21-192 (354)
98 PRK13652 cbiO cobalt transport 99.7 6.2E-18 1.3E-22 174.3 11.6 146 174-331 28-198 (277)
99 PRK13634 cbiO cobalt transport 99.7 4.5E-18 9.7E-23 176.5 10.6 151 174-331 31-206 (290)
100 PRK13638 cbiO cobalt transport 99.7 4.3E-18 9.3E-23 174.8 10.3 149 174-331 25-196 (271)
101 TIGR03410 urea_trans_UrtE urea 99.7 7.8E-18 1.7E-22 168.2 11.9 147 174-331 24-192 (230)
102 cd03257 ABC_NikE_OppD_transpor 99.7 1.1E-17 2.3E-22 166.6 12.7 150 174-331 29-206 (228)
103 cd03294 ABC_Pro_Gly_Bertaine T 99.7 8.8E-18 1.9E-22 172.4 12.4 149 174-331 48-221 (269)
104 cd03264 ABC_drug_resistance_li 99.7 1E-17 2.2E-22 165.2 12.3 142 175-331 25-189 (211)
105 PRK13541 cytochrome c biogenes 99.7 1.6E-17 3.4E-22 162.3 13.4 143 174-332 24-184 (195)
106 COG4152 ABC-type uncharacteriz 99.7 1.8E-17 3.9E-22 164.3 13.8 172 174-370 26-220 (300)
107 TIGR03740 galliderm_ABC gallid 99.7 1.4E-17 3E-22 165.8 13.3 142 174-331 24-184 (223)
108 cd03215 ABC_Carb_Monos_II This 99.7 9.3E-18 2E-22 162.3 11.6 137 174-331 24-164 (182)
109 TIGR03415 ABC_choXWV_ATP choli 99.7 7.6E-18 1.6E-22 180.8 11.9 148 174-331 48-225 (382)
110 COG4181 Predicted ABC-type tra 99.7 5.3E-18 1.2E-22 160.1 9.4 147 173-331 33-207 (228)
111 cd03267 ABC_NatA_like Similar 99.7 8.9E-18 1.9E-22 169.0 11.6 146 174-331 45-214 (236)
112 PRK10771 thiQ thiamine transpo 99.7 1E-17 2.2E-22 167.9 11.8 144 174-331 23-190 (232)
113 PRK13640 cbiO cobalt transport 99.7 7.6E-18 1.6E-22 174.1 11.2 149 174-331 31-204 (282)
114 PRK11831 putative ABC transpor 99.7 1.7E-17 3.7E-22 170.2 13.5 148 174-331 31-204 (269)
115 PRK13539 cytochrome c biogenes 99.7 1.5E-17 3.2E-22 164.1 12.5 143 174-331 26-187 (207)
116 PRK13646 cbiO cobalt transport 99.7 6.3E-18 1.4E-22 175.1 10.1 151 174-331 31-206 (286)
117 PRK11264 putative amino-acid A 99.7 1.5E-17 3.2E-22 168.3 12.6 152 174-331 27-204 (250)
118 PRK11124 artP arginine transpo 99.7 2.8E-17 6E-22 165.6 14.5 150 174-331 26-201 (242)
119 PRK13631 cbiO cobalt transport 99.7 8.5E-18 1.8E-22 176.9 11.1 153 174-331 50-236 (320)
120 cd03297 ABC_ModC_molybdenum_tr 99.7 1.9E-17 4.2E-22 163.7 12.9 149 174-331 22-192 (214)
121 cd03260 ABC_PstB_phosphate_tra 99.7 1.1E-17 2.4E-22 166.8 11.3 146 174-331 24-200 (227)
122 PRK13632 cbiO cobalt transport 99.7 6.6E-18 1.4E-22 173.4 9.8 147 174-331 33-203 (271)
123 cd03230 ABC_DR_subfamily_A Thi 99.7 1.5E-17 3.2E-22 159.6 11.6 131 174-331 24-155 (173)
124 PRK15079 oligopeptide ABC tran 99.7 2.2E-17 4.7E-22 174.6 13.9 149 174-331 45-222 (331)
125 COG4559 ABC-type hemin transpo 99.7 3.2E-17 6.9E-22 159.7 13.8 172 173-366 24-227 (259)
126 PRK10895 lipopolysaccharide AB 99.7 2E-17 4.3E-22 166.6 13.0 147 174-331 27-197 (241)
127 TIGR01184 ntrCD nitrate transp 99.7 2.7E-17 5.8E-22 164.9 13.7 141 174-331 9-175 (230)
128 PRK13642 cbiO cobalt transport 99.7 7.2E-18 1.6E-22 173.8 9.7 147 174-331 31-201 (277)
129 PRK11300 livG leucine/isoleuci 99.7 2.2E-17 4.8E-22 167.5 13.1 146 174-331 29-214 (255)
130 cd03234 ABCG_White The White s 99.7 2.7E-17 5.7E-22 164.2 13.4 143 174-331 31-203 (226)
131 PRK11614 livF leucine/isoleuci 99.7 2E-17 4.4E-22 166.1 12.5 147 174-331 29-197 (237)
132 COG4175 ProV ABC-type proline/ 99.7 5.9E-18 1.3E-22 172.9 8.5 174 173-367 51-252 (386)
133 PRK11231 fecE iron-dicitrate t 99.7 2.1E-17 4.6E-22 167.9 12.6 146 174-331 26-198 (255)
134 TIGR02324 CP_lyasePhnL phospho 99.7 3.1E-17 6.8E-22 163.2 13.4 150 174-330 32-208 (224)
135 PRK13543 cytochrome c biogenes 99.7 2.4E-17 5.2E-22 163.4 12.5 143 174-331 35-197 (214)
136 PRK09984 phosphonate/organopho 99.7 2.9E-17 6.3E-22 167.6 13.5 154 174-331 28-213 (262)
137 PRK10575 iron-hydroxamate tran 99.7 2.1E-17 4.4E-22 169.2 12.3 146 174-331 35-208 (265)
138 COG0411 LivG ABC-type branched 99.7 1.2E-17 2.5E-22 166.1 10.1 146 174-331 28-210 (250)
139 PRK13649 cbiO cobalt transport 99.7 1.3E-17 2.7E-22 172.0 10.8 151 174-331 31-205 (280)
140 cd03252 ABCC_Hemolysin The ABC 99.7 1.3E-17 2.8E-22 167.4 10.5 144 174-331 26-197 (237)
141 cd03233 ABC_PDR_domain1 The pl 99.7 2.6E-17 5.7E-22 161.9 12.3 135 174-330 31-179 (202)
142 TIGR03005 ectoine_ehuA ectoine 99.7 4.2E-17 9E-22 165.4 14.1 152 174-331 24-207 (252)
143 TIGR03873 F420-0_ABC_ATP propo 99.7 2.3E-17 5E-22 167.8 12.1 146 174-331 25-197 (256)
144 PRK13648 cbiO cobalt transport 99.7 1.2E-17 2.5E-22 171.4 9.8 147 174-331 33-203 (269)
145 PRK14247 phosphate ABC transpo 99.7 2.3E-17 4.9E-22 167.0 11.6 148 174-331 27-205 (250)
146 COG4148 ModC ABC-type molybdat 99.7 5.8E-18 1.3E-22 170.5 7.1 148 175-331 23-189 (352)
147 cd03213 ABCG_EPDR ABCG transpo 99.7 3.4E-17 7.4E-22 160.1 12.4 135 174-331 33-171 (194)
148 TIGR03411 urea_trans_UrtD urea 99.7 3.3E-17 7.1E-22 165.0 12.6 146 174-331 26-202 (242)
149 COG1137 YhbG ABC-type (unclass 99.7 2.2E-18 4.7E-23 166.4 3.8 146 174-331 28-199 (243)
150 PRK13548 hmuV hemin importer A 99.7 2.4E-17 5.1E-22 168.2 11.5 146 174-331 26-201 (258)
151 TIGR02770 nickel_nikD nickel i 99.7 2.4E-17 5.3E-22 165.0 11.3 148 174-331 10-186 (230)
152 PRK13645 cbiO cobalt transport 99.7 1.9E-17 4.2E-22 171.5 10.9 152 174-331 35-211 (289)
153 cd03237 ABC_RNaseL_inhibitor_d 99.7 6.6E-17 1.4E-21 164.1 14.3 133 174-330 23-175 (246)
154 PRK14250 phosphate ABC transpo 99.7 2E-17 4.3E-22 166.9 10.3 145 174-331 27-192 (241)
155 COG1129 MglA ABC-type sugar tr 99.7 2.8E-17 6.1E-22 179.3 12.2 150 173-333 31-207 (500)
156 PRK10253 iron-enterobactin tra 99.7 4.4E-17 9.5E-22 166.7 12.9 146 174-331 31-204 (265)
157 cd03229 ABC_Class3 This class 99.7 1.7E-17 3.7E-22 159.9 9.2 136 174-331 24-161 (178)
158 cd03232 ABC_PDR_domain2 The pl 99.7 7.9E-17 1.7E-21 157.2 13.9 126 174-331 31-168 (192)
159 PRK10619 histidine/lysine/argi 99.7 6.7E-17 1.4E-21 164.5 13.7 152 174-331 29-212 (257)
160 cd03251 ABCC_MsbA MsbA is an e 99.7 1.5E-17 3.2E-22 166.5 8.7 144 174-331 26-197 (234)
161 TIGR02769 nickel_nikE nickel i 99.7 8.2E-17 1.8E-21 164.7 14.2 150 174-331 35-211 (265)
162 cd03300 ABC_PotA_N PotA is an 99.7 4.4E-17 9.5E-22 163.4 11.9 144 174-331 24-191 (232)
163 TIGR03771 anch_rpt_ABC anchore 99.7 6.1E-17 1.3E-21 161.6 12.9 142 174-331 4-173 (223)
164 TIGR00972 3a0107s01c2 phosphat 99.7 5.5E-17 1.2E-21 164.1 12.5 149 174-331 25-203 (247)
165 cd03254 ABCC_Glucan_exporter_l 99.7 3.3E-17 7.1E-22 163.5 10.6 144 174-331 27-198 (229)
166 cd03246 ABCC_Protease_Secretio 99.7 6.7E-17 1.4E-21 155.1 12.2 130 174-331 26-156 (173)
167 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 4E-17 8.8E-22 163.9 11.1 144 174-331 27-198 (238)
168 cd03247 ABCC_cytochrome_bd The 99.7 6E-17 1.3E-21 156.0 11.7 131 174-331 26-157 (178)
169 cd03248 ABCC_TAP TAP, the Tran 99.7 4.5E-17 9.8E-22 162.3 11.2 144 174-331 38-209 (226)
170 PRK11308 dppF dipeptide transp 99.7 9E-17 2E-21 169.6 13.9 150 174-331 39-215 (327)
171 TIGR00968 3a0106s01 sulfate AB 99.7 4E-17 8.7E-22 164.3 10.8 144 174-331 24-191 (237)
172 PRK14273 phosphate ABC transpo 99.7 5.8E-17 1.3E-21 164.6 11.8 149 174-331 31-209 (254)
173 cd03299 ABC_ModC_like Archeal 99.7 7.5E-17 1.6E-21 162.1 12.4 144 174-331 23-190 (235)
174 TIGR02982 heterocyst_DevA ABC 99.7 1.6E-16 3.4E-21 158.0 14.5 149 174-331 29-202 (220)
175 PRK09473 oppD oligopeptide tra 99.7 1.8E-16 4E-21 167.5 15.9 150 174-331 40-222 (330)
176 TIGR01187 potA spermidine/putr 99.7 3.9E-17 8.5E-22 172.2 10.7 137 181-331 1-161 (325)
177 PRK10247 putative ABC transpor 99.7 5.2E-17 1.1E-21 162.2 10.6 145 174-331 31-198 (225)
178 cd03245 ABCC_bacteriocin_expor 99.7 6.2E-17 1.3E-21 160.5 11.0 144 174-331 28-199 (220)
179 cd03253 ABCC_ATM1_transporter 99.7 6.1E-17 1.3E-21 162.3 11.0 144 174-331 25-196 (236)
180 PRK15093 antimicrobial peptide 99.7 1.5E-16 3.3E-21 168.1 14.5 153 174-331 31-219 (330)
181 COG4133 CcmA ABC-type transpor 99.7 1.1E-16 2.5E-21 153.3 11.6 140 174-331 26-190 (209)
182 PRK10762 D-ribose transporter 99.7 4.2E-17 9.1E-22 181.3 10.0 146 174-331 28-201 (501)
183 PRK14268 phosphate ABC transpo 99.7 9.3E-17 2E-21 163.6 11.7 149 174-331 36-213 (258)
184 PRK14267 phosphate ABC transpo 99.7 1.5E-16 3.3E-21 161.3 13.1 149 174-331 28-208 (253)
185 cd03223 ABCD_peroxisomal_ALDP 99.7 1.1E-16 2.4E-21 152.8 11.4 121 174-331 25-148 (166)
186 PRK14242 phosphate transporter 99.7 1.2E-16 2.7E-21 162.0 12.4 149 174-331 30-208 (253)
187 cd03228 ABCC_MRP_Like The MRP 99.7 8.1E-17 1.7E-21 154.2 10.4 129 174-331 26-155 (171)
188 TIGR01978 sufC FeS assembly AT 99.7 1.1E-16 2.4E-21 161.0 11.9 147 174-331 24-204 (243)
189 PRK15439 autoinducer 2 ABC tra 99.7 5.7E-17 1.2E-21 180.7 10.8 146 174-331 35-200 (510)
190 PRK15112 antimicrobial peptide 99.7 1E-16 2.3E-21 164.2 11.8 147 174-331 37-210 (267)
191 PRK13547 hmuV hemin importer A 99.7 1.3E-16 2.9E-21 164.2 12.5 149 174-331 25-215 (272)
192 PRK11022 dppD dipeptide transp 99.7 2.4E-16 5.1E-21 166.4 14.5 150 174-331 31-214 (326)
193 TIGR01257 rim_protein retinal- 99.7 6.1E-17 1.3E-21 200.7 11.4 175 174-370 1963-2160(2272)
194 PRK14241 phosphate transporter 99.7 2E-16 4.4E-21 161.0 13.4 150 174-331 28-207 (258)
195 PRK11701 phnK phosphonate C-P 99.7 3E-16 6.6E-21 159.7 14.3 150 174-331 30-212 (258)
196 PRK10744 pstB phosphate transp 99.7 1.4E-16 3.1E-21 162.5 11.9 148 174-330 37-214 (260)
197 PRK09700 D-allose transporter 99.7 4.6E-17 1E-21 181.3 9.0 149 173-331 286-469 (510)
198 COG1123 ATPase components of v 99.7 3.2E-16 7E-21 172.1 15.5 150 173-331 314-490 (539)
199 PRK09544 znuC high-affinity zi 99.7 2.5E-16 5.5E-21 160.2 13.5 135 174-331 28-181 (251)
200 PRK14263 phosphate ABC transpo 99.7 1.6E-16 3.4E-21 162.6 12.0 149 174-331 32-208 (261)
201 PRK14259 phosphate ABC transpo 99.7 1.3E-16 2.9E-21 163.7 11.4 148 174-330 37-212 (269)
202 PRK14245 phosphate ABC transpo 99.7 2.3E-16 4.9E-21 159.9 12.9 148 174-331 27-205 (250)
203 PRK14272 phosphate ABC transpo 99.7 2.4E-16 5.2E-21 159.7 13.0 150 174-331 28-207 (252)
204 PRK14260 phosphate ABC transpo 99.7 1.4E-16 3E-21 162.4 11.3 149 174-331 31-209 (259)
205 PRK15056 manganese/iron transp 99.7 1.9E-16 4E-21 162.8 12.3 144 174-331 31-202 (272)
206 PRK14240 phosphate transporter 99.7 2E-16 4.3E-21 160.2 12.2 149 174-331 27-205 (250)
207 PRK13549 xylose transporter AT 99.7 1.3E-16 2.8E-21 177.6 11.9 148 174-331 29-203 (506)
208 TIGR02868 CydC thiol reductant 99.7 1.4E-16 3.1E-21 177.9 12.1 143 173-330 358-528 (529)
209 PRK14262 phosphate ABC transpo 99.7 2.7E-16 5.9E-21 159.2 12.9 149 174-331 27-205 (250)
210 cd03369 ABCC_NFT1 Domain 2 of 99.7 1.3E-16 2.8E-21 157.1 10.2 141 174-331 32-184 (207)
211 PRK14256 phosphate ABC transpo 99.7 2.9E-16 6.3E-21 159.2 13.1 149 174-330 28-206 (252)
212 TIGR03269 met_CoM_red_A2 methy 99.7 2.5E-16 5.3E-21 175.9 13.8 155 174-331 24-229 (520)
213 PRK14274 phosphate ABC transpo 99.7 1.7E-16 3.6E-21 161.8 11.3 148 174-330 36-213 (259)
214 PRK03695 vitamin B12-transport 99.7 2.1E-16 4.4E-21 160.4 11.9 145 174-331 20-193 (248)
215 PRK10261 glutathione transport 99.7 3.2E-16 7E-21 178.7 14.8 152 174-331 40-229 (623)
216 cd03250 ABCC_MRP_domain1 Domai 99.7 2.9E-16 6.3E-21 154.2 12.4 132 174-331 29-188 (204)
217 PRK14235 phosphate transporter 99.7 2.7E-16 5.8E-21 161.2 12.3 148 174-330 43-221 (267)
218 PRK09700 D-allose transporter 99.7 1.1E-16 2.5E-21 178.2 10.4 146 174-331 29-205 (510)
219 PRK14270 phosphate ABC transpo 99.7 2.8E-16 6.1E-21 159.3 12.2 148 174-330 28-205 (251)
220 PRK14237 phosphate transporter 99.7 2.6E-16 5.7E-21 161.2 12.1 149 174-331 44-222 (267)
221 COG2274 SunT ABC-type bacterio 99.7 2.3E-16 5E-21 180.6 12.9 144 173-331 496-668 (709)
222 PRK14269 phosphate ABC transpo 99.7 3.2E-16 7E-21 158.5 12.6 147 174-331 26-201 (246)
223 PRK14249 phosphate ABC transpo 99.7 2.8E-16 6.1E-21 159.3 12.2 148 174-331 28-206 (251)
224 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 3.2E-16 6.9E-21 156.6 12.4 134 174-331 46-202 (224)
225 PRK10419 nikE nickel transport 99.7 5.9E-16 1.3E-20 158.8 14.5 150 174-331 36-212 (268)
226 cd03244 ABCC_MRP_domain2 Domai 99.7 2.1E-16 4.6E-21 156.8 10.8 144 174-331 28-198 (221)
227 PRK10261 glutathione transport 99.7 3.2E-16 6.9E-21 178.7 13.7 149 174-331 348-524 (623)
228 PRK14255 phosphate ABC transpo 99.7 3.8E-16 8.2E-21 158.3 12.7 148 174-330 29-206 (252)
229 PRK14239 phosphate transporter 99.7 2.2E-16 4.7E-21 159.9 10.7 149 174-331 29-207 (252)
230 cd03290 ABCC_SUR1_N The SUR do 99.7 2.7E-16 5.9E-21 156.0 11.1 149 174-331 25-202 (218)
231 PRK14248 phosphate ABC transpo 99.7 3.9E-16 8.4E-21 159.9 12.5 148 174-330 45-222 (268)
232 PRK10418 nikD nickel transport 99.7 4.9E-16 1.1E-20 158.0 13.0 148 174-331 27-201 (254)
233 PRK14261 phosphate ABC transpo 99.7 4.7E-16 1E-20 157.8 12.7 149 174-331 30-208 (253)
234 COG4161 ArtP ABC-type arginine 99.7 1.8E-16 3.9E-21 148.5 8.8 147 174-329 26-199 (242)
235 PRK10982 galactose/methyl gala 99.7 1.8E-16 3.8E-21 175.9 10.3 147 174-331 22-194 (491)
236 TIGR01257 rim_protein retinal- 99.7 1.7E-16 3.8E-21 196.7 11.3 145 174-332 954-1121(2272)
237 PRK13549 xylose transporter AT 99.7 1.9E-16 4E-21 176.4 10.4 148 174-331 286-465 (506)
238 PLN03211 ABC transporter G-25; 99.7 5.3E-16 1.2E-20 177.6 14.4 145 174-332 92-267 (659)
239 PRK14244 phosphate ABC transpo 99.7 8.7E-16 1.9E-20 155.7 14.4 149 174-331 29-208 (251)
240 PRK14254 phosphate ABC transpo 99.7 5.2E-16 1.1E-20 160.7 13.0 148 174-330 63-238 (285)
241 PRK14238 phosphate transporter 99.7 5.2E-16 1.1E-20 159.5 12.7 149 174-331 48-226 (271)
242 COG4598 HisP ABC-type histidin 99.7 1.2E-16 2.6E-21 152.0 7.1 156 174-331 30-212 (256)
243 PRK11174 cysteine/glutathione 99.7 3.9E-16 8.4E-21 176.6 12.4 142 174-330 374-543 (588)
244 TIGR02633 xylG D-xylose ABC tr 99.7 2.5E-16 5.4E-21 175.0 10.6 149 174-331 284-463 (500)
245 PRK14251 phosphate ABC transpo 99.7 7E-16 1.5E-20 156.3 12.8 149 174-331 28-206 (251)
246 PRK11288 araG L-arabinose tran 99.7 2.5E-16 5.4E-21 175.1 10.4 146 174-331 28-200 (501)
247 PRK14265 phosphate ABC transpo 99.7 4.8E-16 1E-20 160.1 11.7 147 174-330 44-219 (274)
248 PRK11176 lipid transporter ATP 99.7 4.2E-16 9E-21 176.1 12.3 143 174-330 367-538 (582)
249 PRK14243 phosphate transporter 99.7 5.9E-16 1.3E-20 158.4 12.1 148 174-330 34-209 (264)
250 cd03217 ABC_FeS_Assembly ABC-t 99.7 4.8E-16 1E-20 152.6 11.0 137 174-331 24-164 (200)
251 PRK10938 putative molybdenum t 99.7 4E-16 8.6E-21 173.0 11.6 146 174-331 27-195 (490)
252 TIGR02323 CP_lyasePhnK phospho 99.7 1.3E-15 2.9E-20 154.4 14.5 153 174-331 27-209 (253)
253 COG4988 CydD ABC-type transpor 99.7 7.2E-16 1.6E-20 169.1 13.3 145 173-331 344-515 (559)
254 PRK14275 phosphate ABC transpo 99.7 9.7E-16 2.1E-20 158.8 13.7 149 174-331 63-241 (286)
255 PRK10790 putative multidrug tr 99.7 5.6E-16 1.2E-20 175.5 12.9 143 173-331 364-535 (592)
256 PRK14258 phosphate ABC transpo 99.7 7.3E-16 1.6E-20 157.4 12.5 150 174-331 31-211 (261)
257 TIGR02633 xylG D-xylose ABC tr 99.6 5.8E-16 1.2E-20 172.1 12.6 148 174-331 25-201 (500)
258 PRK15134 microcin C ABC transp 99.6 8.4E-16 1.8E-20 172.0 13.9 149 173-331 309-486 (529)
259 PRK10762 D-ribose transporter 99.6 3.5E-16 7.6E-21 173.9 10.8 148 174-331 276-455 (501)
260 PRK14266 phosphate ABC transpo 99.6 6.7E-16 1.5E-20 156.3 11.8 149 174-331 27-205 (250)
261 PRK15134 microcin C ABC transp 99.6 8.7E-16 1.9E-20 171.9 13.9 153 174-331 33-217 (529)
262 TIGR03269 met_CoM_red_A2 methy 99.6 9.9E-16 2.2E-20 171.0 14.1 152 173-331 307-488 (520)
263 PRK11288 araG L-arabinose tran 99.6 2.9E-16 6.2E-21 174.7 9.6 148 174-331 277-456 (501)
264 cd03289 ABCC_CFTR2 The CFTR su 99.6 6E-16 1.3E-20 159.6 11.2 142 174-331 28-197 (275)
265 PRK13546 teichoic acids export 99.6 1.2E-15 2.5E-20 156.6 12.8 133 174-331 48-203 (264)
266 PRK14253 phosphate ABC transpo 99.6 1.2E-15 2.7E-20 154.2 12.9 147 174-330 27-203 (249)
267 PRK14236 phosphate transporter 99.6 9.8E-16 2.1E-20 157.5 12.1 149 174-331 49-227 (272)
268 COG0444 DppD ABC-type dipeptid 99.6 1.5E-15 3.1E-20 156.9 13.3 151 174-330 29-213 (316)
269 COG4619 ABC-type uncharacteriz 99.6 2.9E-16 6.2E-21 148.1 7.1 143 173-329 26-193 (223)
270 TIGR00955 3a01204 The Eye Pigm 99.6 1E-15 2.2E-20 174.4 13.0 149 174-334 49-229 (617)
271 TIGR03796 NHPM_micro_ABC1 NHPM 99.6 9.4E-16 2E-20 177.3 12.3 143 173-331 502-672 (710)
272 TIGR02203 MsbA_lipidA lipid A 99.6 1.2E-15 2.5E-20 172.0 12.7 144 173-329 355-527 (571)
273 CHL00131 ycf16 sulfate ABC tra 99.6 1.4E-15 3.1E-20 154.0 11.9 147 174-331 31-211 (252)
274 PRK13409 putative ATPase RIL; 99.6 1.8E-15 3.9E-20 171.3 14.0 132 174-330 363-513 (590)
275 PRK14271 phosphate ABC transpo 99.6 2.5E-15 5.4E-20 155.0 13.7 148 174-331 45-222 (276)
276 COG4586 ABC-type uncharacteriz 99.6 1.6E-15 3.5E-20 152.6 11.6 147 173-331 47-217 (325)
277 TIGR01842 type_I_sec_PrtD type 99.6 1.8E-15 3.9E-20 169.9 13.4 145 174-331 342-514 (544)
278 TIGR03375 type_I_sec_LssB type 99.6 1.3E-15 2.7E-20 175.8 12.4 142 174-330 489-659 (694)
279 PRK14264 phosphate ABC transpo 99.6 2E-15 4.3E-20 157.9 12.6 148 174-330 69-258 (305)
280 KOG0061 Transporter, ABC super 99.6 2.7E-15 5.8E-20 170.4 14.6 152 174-337 54-236 (613)
281 TIGR03797 NHPM_micro_ABC2 NHPM 99.6 1.2E-15 2.6E-20 175.7 11.9 142 173-331 476-645 (686)
282 COG1123 ATPase components of v 99.6 4.9E-15 1.1E-19 162.9 15.9 154 174-331 33-215 (539)
283 TIGR02204 MsbA_rel ABC transpo 99.6 1.5E-15 3.3E-20 171.2 12.4 145 173-331 363-535 (576)
284 PRK15439 autoinducer 2 ABC tra 99.6 8.8E-16 1.9E-20 171.2 10.2 147 174-331 287-463 (510)
285 PRK11147 ABC transporter ATPas 99.6 1.4E-15 3.1E-20 173.7 12.2 133 173-329 342-496 (635)
286 COG4136 ABC-type uncharacteriz 99.6 5.9E-16 1.3E-20 143.6 7.2 146 174-330 26-195 (213)
287 PRK14246 phosphate ABC transpo 99.6 3.4E-15 7.5E-20 152.3 13.6 147 174-331 34-212 (257)
288 PRK13657 cyclic beta-1,2-gluca 99.6 1.9E-15 4E-20 171.2 12.8 144 174-331 359-530 (588)
289 PRK14257 phosphate ABC transpo 99.6 3.4E-15 7.4E-20 157.8 13.8 150 173-331 105-284 (329)
290 cd03214 ABC_Iron-Siderophores_ 99.6 4E-16 8.7E-21 150.6 5.8 122 174-331 23-158 (180)
291 cd03291 ABCC_CFTR1 The CFTR su 99.6 3.7E-15 8.1E-20 154.3 13.2 131 174-331 61-219 (282)
292 PRK13409 putative ATPase RIL; 99.6 2.4E-15 5.1E-20 170.3 12.7 150 172-331 95-271 (590)
293 COG4674 Uncharacterized ABC-ty 99.6 1.6E-15 3.4E-20 146.2 9.4 163 174-363 29-223 (249)
294 PRK11160 cysteine/glutathione 99.6 1.7E-15 3.7E-20 171.3 11.4 145 173-331 363-534 (574)
295 cd03222 ABC_RNaseL_inhibitor T 99.6 4.2E-15 9.2E-20 143.8 12.5 108 174-331 23-132 (177)
296 TIGR01193 bacteriocin_ABC ABC- 99.6 2.1E-15 4.5E-20 174.4 12.2 144 173-331 497-669 (708)
297 PRK09580 sufC cysteine desulfu 99.6 4.6E-15 1E-19 149.8 13.3 148 174-331 25-205 (248)
298 PRK14252 phosphate ABC transpo 99.6 4.9E-15 1.1E-19 151.6 13.6 150 174-331 40-220 (265)
299 TIGR02857 CydD thiol reductant 99.6 1.3E-15 2.8E-20 170.3 10.1 145 173-331 345-517 (529)
300 cd03216 ABC_Carb_Monos_I This 99.6 2.3E-15 4.9E-20 143.3 10.2 117 174-331 24-142 (163)
301 cd03288 ABCC_SUR2 The SUR doma 99.6 3.2E-15 6.8E-20 152.4 11.8 144 174-331 45-215 (257)
302 PRK15064 ABC transporter ATP-b 99.6 4.8E-15 1E-19 166.0 13.8 132 174-331 25-212 (530)
303 cd03236 ABC_RNaseL_inhibitor_d 99.6 6.1E-15 1.3E-19 150.6 13.2 147 174-331 24-199 (255)
304 PRK10789 putative multidrug tr 99.6 3.6E-15 7.8E-20 168.4 12.5 145 173-331 338-510 (569)
305 TIGR00958 3a01208 Conjugate Tr 99.6 3E-15 6.4E-20 173.2 12.0 143 173-331 504-674 (711)
306 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 4.3E-15 9.4E-20 167.2 12.6 132 174-330 346-499 (552)
307 PRK15064 ABC transporter ATP-b 99.6 5.8E-15 1.3E-19 165.3 13.5 132 174-330 343-494 (530)
308 PRK11819 putative ABC transpor 99.6 4.7E-15 1E-19 167.0 12.8 133 173-329 347-501 (556)
309 PRK11819 putative ABC transpor 99.6 5.7E-15 1.2E-19 166.4 13.3 131 174-330 31-219 (556)
310 PRK15177 Vi polysaccharide exp 99.6 6.9E-15 1.5E-19 146.0 11.9 132 174-331 11-163 (213)
311 PRK10636 putative ABC transpor 99.6 4.6E-15 1E-19 169.6 12.1 132 174-330 336-486 (638)
312 TIGR01192 chvA glucan exporter 99.6 6.1E-15 1.3E-19 167.1 12.9 144 174-331 359-530 (585)
313 TIGR01846 type_I_sec_HlyB type 99.6 5.3E-15 1.2E-19 170.7 12.3 144 174-331 481-652 (694)
314 PRK10535 macrolide transporter 99.6 1E-14 2.2E-19 167.2 14.2 146 174-331 32-204 (648)
315 TIGR00956 3a01205 Pleiotropic 99.6 5.6E-15 1.2E-19 181.3 12.5 147 174-333 787-964 (1394)
316 COG1132 MdlB ABC-type multidru 99.6 7.9E-15 1.7E-19 165.4 12.5 144 173-330 352-523 (567)
317 PRK13545 tagH teichoic acids e 99.6 1.3E-14 2.7E-19 160.2 13.6 133 174-331 48-203 (549)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 9.9E-15 2.1E-19 164.3 13.1 131 174-330 29-217 (552)
319 PRK10982 galactose/methyl gala 99.6 4.1E-15 8.9E-20 165.0 9.8 148 173-331 271-451 (491)
320 TIGR00954 3a01203 Peroxysomal 99.6 1.3E-14 2.9E-19 166.4 14.3 150 174-368 476-658 (659)
321 COG4138 BtuD ABC-type cobalami 99.6 1.7E-14 3.6E-19 137.0 12.3 145 174-331 23-192 (248)
322 PLN03140 ABC transporter G fam 99.6 8.7E-15 1.9E-19 179.6 12.9 146 174-332 904-1080(1470)
323 KOG0057 Mitochondrial Fe/S clu 99.6 1.1E-14 2.3E-19 158.2 12.0 159 173-364 375-561 (591)
324 PRK10938 putative molybdenum t 99.6 6.4E-15 1.4E-19 163.4 10.0 149 174-331 284-462 (490)
325 COG4618 ArpD ABC-type protease 99.6 1.4E-14 3.1E-19 156.0 11.5 145 174-331 360-532 (580)
326 TIGR00956 3a01205 Pleiotropic 99.6 2.5E-14 5.4E-19 175.7 15.2 151 174-334 85-273 (1394)
327 KOG0058 Peptide exporter, ABC 99.6 2.2E-14 4.7E-19 160.4 12.7 144 173-329 491-662 (716)
328 PLN03140 ABC transporter G fam 99.5 2E-14 4.3E-19 176.5 13.3 149 174-334 189-400 (1470)
329 COG1101 PhnK ABC-type uncharac 99.5 7.1E-15 1.5E-19 143.7 7.3 148 173-331 29-210 (263)
330 COG0488 Uup ATPase components 99.5 2.9E-14 6.3E-19 158.7 13.1 134 173-330 345-496 (530)
331 PTZ00265 multidrug resistance 99.5 1.9E-14 4.1E-19 177.1 12.3 147 173-330 1191-1418(1466)
332 KOG0055 Multidrug/pheromone ex 99.5 3.1E-14 6.7E-19 167.2 11.6 143 173-329 376-547 (1228)
333 COG0488 Uup ATPase components 99.5 6.8E-14 1.5E-18 155.7 13.4 133 173-330 26-210 (530)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 4.9E-14 1.1E-18 131.6 9.7 103 174-331 24-127 (144)
335 cd00267 ABC_ATPase ABC (ATP-bi 99.5 4.9E-14 1.1E-18 132.8 9.7 117 174-331 23-140 (157)
336 COG4987 CydC ABC-type transpor 99.5 4.2E-14 9.2E-19 153.5 10.2 146 173-331 361-534 (573)
337 KOG0059 Lipid exporter ABCA1 a 99.5 5.4E-14 1.2E-18 166.0 11.8 175 173-367 588-785 (885)
338 PTZ00265 multidrug resistance 99.5 6.9E-14 1.5E-18 172.2 12.5 145 174-331 409-640 (1466)
339 COG4172 ABC-type uncharacteriz 99.5 1.5E-13 3.2E-18 144.7 13.0 148 174-330 311-486 (534)
340 COG1134 TagH ABC-type polysacc 99.5 1.9E-13 4.1E-18 136.4 12.3 133 174-330 51-206 (249)
341 PRK10522 multidrug transporter 99.5 5.3E-14 1.1E-18 158.2 9.4 139 174-330 347-509 (547)
342 COG4604 CeuD ABC-type enteroch 99.5 4.5E-13 9.7E-18 129.6 14.3 149 173-337 24-203 (252)
343 PLN03232 ABC transporter C fam 99.5 7.4E-14 1.6E-18 172.8 11.4 142 174-331 1260-1430(1495)
344 COG4172 ABC-type uncharacteriz 99.5 2.9E-13 6.3E-18 142.5 13.8 150 173-330 33-218 (534)
345 PLN03073 ABC transporter F fam 99.5 1.5E-13 3.3E-18 158.6 11.9 129 174-330 533-683 (718)
346 PLN03130 ABC transporter C fam 99.5 1.1E-13 2.4E-18 171.8 11.5 143 173-331 1262-1433(1622)
347 TIGR01194 cyc_pep_trnsptr cycl 99.5 8.6E-14 1.9E-18 156.8 9.1 141 174-331 366-531 (555)
348 cd03238 ABC_UvrA The excision 99.5 1.2E-13 2.6E-18 133.6 8.9 116 174-331 19-149 (176)
349 PRK10636 putative ABC transpor 99.5 3.5E-13 7.5E-18 154.3 14.1 131 174-330 25-206 (638)
350 KOG0065 Pleiotropic drug resis 99.5 1.9E-13 4.2E-18 160.6 12.1 147 174-334 815-993 (1391)
351 COG0396 sufC Cysteine desulfur 99.4 6.9E-13 1.5E-17 131.1 12.7 148 173-329 27-203 (251)
352 TIGR00957 MRP_assoc_pro multi 99.4 2.3E-13 4.9E-18 168.8 11.3 143 173-331 1309-1480(1522)
353 PTZ00243 ABC transporter; Prov 99.4 2.6E-13 5.7E-18 168.2 11.7 143 173-331 1333-1505(1560)
354 COG4778 PhnL ABC-type phosphon 99.4 7.7E-13 1.7E-17 125.3 11.6 150 173-330 34-211 (235)
355 COG1119 ModF ABC-type molybden 99.4 2.1E-13 4.5E-18 136.1 8.2 148 173-330 54-232 (257)
356 TIGR01271 CFTR_protein cystic 99.4 1.1E-12 2.4E-17 162.4 14.7 131 174-331 450-608 (1490)
357 TIGR01271 CFTR_protein cystic 99.4 5.6E-13 1.2E-17 165.0 12.1 142 173-331 1242-1412(1490)
358 PLN03130 ABC transporter C fam 99.4 9.4E-13 2E-17 163.7 13.4 131 174-330 641-799 (1622)
359 PRK11147 ABC transporter ATPas 99.4 9E-13 1.9E-17 150.9 12.1 51 278-330 151-213 (635)
360 PLN03232 ABC transporter C fam 99.4 1E-12 2.3E-17 162.8 13.1 131 174-330 641-799 (1495)
361 KOG0055 Multidrug/pheromone ex 99.4 7.5E-13 1.6E-17 155.7 11.0 142 174-329 1014-1184(1228)
362 TIGR00957 MRP_assoc_pro multi 99.4 1.5E-12 3.3E-17 161.5 14.4 132 174-331 662-822 (1522)
363 cd03278 ABC_SMC_barmotin Barmo 99.4 3.2E-13 6.9E-18 132.8 6.3 139 175-331 22-176 (197)
364 cd03240 ABC_Rad50 The catalyti 99.4 6.7E-13 1.5E-17 131.1 8.5 132 177-330 23-182 (204)
365 COG4608 AppF ABC-type oligopep 99.4 1.4E-12 3.1E-17 132.2 11.0 120 174-330 37-169 (268)
366 cd03279 ABC_sbcCD SbcCD and ot 99.4 2.5E-12 5.5E-17 127.6 12.4 140 175-331 27-193 (213)
367 PTZ00243 ABC transporter; Prov 99.4 2.2E-12 4.7E-17 160.2 14.1 130 174-330 684-841 (1560)
368 cd03272 ABC_SMC3_euk Eukaryoti 99.4 1.2E-12 2.6E-17 131.9 8.8 53 278-331 153-221 (243)
369 PF00005 ABC_tran: ABC transpo 99.4 5.9E-13 1.3E-17 121.8 5.5 113 174-301 9-137 (137)
370 cd03273 ABC_SMC2_euk Eukaryoti 99.4 5.1E-13 1.1E-17 135.7 4.9 148 175-330 24-228 (251)
371 COG4107 PhnK ABC-type phosphon 99.3 2.3E-12 5E-17 122.5 8.5 153 174-331 30-213 (258)
372 PRK08181 transposase; Validate 99.3 1.4E-11 2.9E-16 126.8 12.7 142 175-371 105-248 (269)
373 KOG0056 Heavy metal exporter H 99.3 3.8E-12 8.2E-17 136.4 8.7 143 174-330 562-733 (790)
374 cd03283 ABC_MutS-like MutS-lik 99.3 4.9E-12 1.1E-16 124.6 8.8 123 175-331 24-148 (199)
375 PRK08939 primosomal protein Dn 99.3 2.3E-11 5.1E-16 127.4 13.5 141 175-369 155-305 (306)
376 PRK09183 transposase/IS protei 99.3 3E-11 6.5E-16 123.8 13.9 144 174-371 100-246 (259)
377 PRK06526 transposase; Provisio 99.3 3E-11 6.4E-16 123.5 12.5 142 175-371 97-240 (254)
378 KOG0927 Predicted transporter 99.2 1.9E-11 4.1E-16 132.8 10.0 135 173-330 413-566 (614)
379 PLN03073 ABC transporter F fam 99.2 8.9E-12 1.9E-16 144.1 8.0 52 276-330 337-400 (718)
380 COG4167 SapF ABC-type antimicr 99.2 1.1E-10 2.3E-15 112.1 12.4 145 174-329 37-209 (267)
381 cd03270 ABC_UvrA_I The excisio 99.2 5.4E-11 1.2E-15 119.3 10.7 55 277-331 131-199 (226)
382 COG5265 ATM1 ABC-type transpor 99.2 1.8E-10 3.9E-15 122.3 12.2 144 173-329 286-457 (497)
383 PRK08116 hypothetical protein; 99.2 1.8E-10 4E-15 118.5 11.6 140 176-371 114-255 (268)
384 cd03271 ABC_UvrA_II The excisi 99.2 2E-10 4.4E-15 117.7 11.8 84 247-330 127-231 (261)
385 COG1245 Predicted ATPase, RNas 99.1 4.2E-10 9E-15 120.5 13.2 156 172-330 96-273 (591)
386 KOG0054 Multidrug resistance-a 99.1 2.3E-10 5E-15 137.6 12.6 131 173-329 544-702 (1381)
387 cd03276 ABC_SMC6_euk Eukaryoti 99.1 4.4E-10 9.5E-15 110.6 11.7 134 177-331 22-176 (198)
388 PF01695 IstB_IS21: IstB-like 99.1 1.1E-10 2.4E-15 113.1 7.2 131 175-359 46-178 (178)
389 PRK12377 putative replication 99.1 6.1E-10 1.3E-14 113.4 12.5 138 176-371 101-241 (248)
390 COG1129 MglA ABC-type sugar tr 99.1 3E-10 6.5E-15 124.6 10.5 152 173-334 282-464 (500)
391 KOG0054 Multidrug resistance-a 99.1 2.6E-10 5.6E-15 137.2 10.2 170 173-367 1163-1360(1381)
392 cd03274 ABC_SMC4_euk Eukaryoti 99.1 2.6E-11 5.6E-16 120.6 1.3 40 290-329 149-189 (212)
393 COG4178 ABC-type uncharacteriz 99.1 5.1E-10 1.1E-14 125.1 11.5 134 173-331 416-574 (604)
394 KOG0062 ATPase component of AB 99.1 3.6E-10 7.8E-15 122.5 9.6 52 276-330 191-255 (582)
395 cd03275 ABC_SMC1_euk Eukaryoti 99.1 7.5E-10 1.6E-14 112.4 11.4 52 279-330 151-218 (247)
396 cd03280 ABC_MutS2 MutS2 homolo 99.1 2.2E-10 4.9E-15 112.5 6.9 42 289-330 107-150 (200)
397 KOG0066 eIF2-interacting prote 99.1 4.6E-10 1E-14 119.2 9.2 128 176-330 613-761 (807)
398 PRK06835 DNA replication prote 99.1 1.2E-09 2.6E-14 115.6 12.3 139 176-371 183-323 (329)
399 COG1222 RPT1 ATP-dependent 26S 99.0 2.2E-09 4.7E-14 112.3 11.6 145 172-371 181-350 (406)
400 COG1245 Predicted ATPase, RNas 99.0 1.8E-09 3.9E-14 115.7 10.7 145 174-360 365-530 (591)
401 PRK06921 hypothetical protein; 98.9 1.2E-08 2.7E-13 105.0 14.2 136 175-369 116-258 (266)
402 COG1484 DnaC DNA replication p 98.9 8.4E-09 1.8E-13 105.5 12.7 143 175-371 104-248 (254)
403 cd03277 ABC_SMC5_euk Eukaryoti 98.9 1.9E-09 4.1E-14 107.4 7.7 41 289-329 147-191 (213)
404 cd03243 ABC_MutS_homologs The 98.9 1.9E-09 4.1E-14 106.1 7.5 43 289-331 107-151 (202)
405 PRK07952 DNA replication prote 98.9 1.4E-08 3.1E-13 103.2 12.9 138 177-371 100-240 (244)
406 PRK00635 excinuclease ABC subu 98.9 8.5E-09 1.8E-13 127.4 12.9 84 248-331 760-872 (1809)
407 cd03239 ABC_SMC_head The struc 98.9 1.1E-08 2.4E-13 99.1 10.8 134 178-331 24-158 (178)
408 KOG0060 Long-chain acyl-CoA tr 98.9 7.5E-09 1.6E-13 113.7 10.2 155 173-369 458-647 (659)
409 KOG0927 Predicted transporter 98.9 1.1E-08 2.3E-13 111.8 10.8 55 274-330 212-278 (614)
410 PF00308 Bac_DnaA: Bacterial d 98.8 2.1E-08 4.6E-13 100.3 11.7 106 177-336 35-145 (219)
411 COG4170 SapD ABC-type antimicr 98.8 1.1E-08 2.4E-13 100.2 9.1 154 174-331 31-219 (330)
412 KOG0062 ATPase component of AB 98.8 5.1E-09 1.1E-13 113.7 7.2 54 275-330 474-539 (582)
413 TIGR02858 spore_III_AA stage I 98.8 1.1E-08 2.5E-13 105.4 9.3 117 177-330 112-228 (270)
414 PRK00349 uvrA excinuclease ABC 98.8 1.5E-08 3.2E-13 120.0 11.1 81 250-330 791-892 (943)
415 COG4615 PvdE ABC-type sideroph 98.8 1.2E-08 2.6E-13 107.8 9.0 143 174-332 347-510 (546)
416 PRK08727 hypothetical protein; 98.8 3.2E-08 7E-13 99.8 11.4 48 289-336 92-141 (233)
417 TIGR00630 uvra excinuclease AB 98.8 1.7E-08 3.7E-13 119.2 10.0 54 277-330 822-890 (924)
418 PRK08084 DNA replication initi 98.8 4E-08 8.7E-13 99.2 10.7 117 176-364 45-167 (235)
419 KOG0734 AAA+-type ATPase conta 98.8 1.2E-08 2.7E-13 110.8 7.1 157 153-371 320-499 (752)
420 PRK06893 DNA replication initi 98.7 3.2E-08 6.9E-13 99.6 9.0 48 289-336 90-140 (229)
421 PRK14088 dnaA chromosomal repl 98.7 8.5E-08 1.8E-12 105.5 12.5 46 290-335 194-241 (440)
422 cd03284 ABC_MutS1 MutS1 homolo 98.7 4.2E-08 9E-13 98.0 9.2 118 177-331 31-153 (216)
423 cd03282 ABC_MSH4_euk MutS4 hom 98.7 1.3E-08 2.9E-13 100.7 5.3 43 289-331 107-151 (204)
424 cd03281 ABC_MSH5_euk MutS5 hom 98.7 6.7E-08 1.5E-12 96.3 10.1 43 289-331 107-154 (213)
425 KOG0727 26S proteasome regulat 98.7 4.9E-08 1.1E-12 97.9 8.6 118 172-344 185-321 (408)
426 KOG0733 Nuclear AAA ATPase (VC 98.7 3.6E-08 7.9E-13 108.7 8.2 144 172-371 219-389 (802)
427 PRK05642 DNA replication initi 98.7 8.7E-08 1.9E-12 96.8 10.4 47 290-336 97-145 (234)
428 cd03227 ABC_Class2 ABC-type Cl 98.7 2E-07 4.4E-12 88.7 12.1 42 290-331 99-141 (162)
429 PRK14086 dnaA chromosomal repl 98.7 9.1E-08 2E-12 108.0 11.3 47 289-335 376-424 (617)
430 PRK14087 dnaA chromosomal repl 98.7 1.5E-07 3.2E-12 103.9 12.1 47 289-335 205-253 (450)
431 smart00534 MUTSac ATPase domai 98.7 2.5E-08 5.4E-13 97.0 5.3 43 289-331 77-122 (185)
432 KOG0733 Nuclear AAA ATPase (VC 98.6 1.1E-07 2.4E-12 105.1 10.5 144 173-371 542-709 (802)
433 COG3910 Predicted ATPase [Gene 98.6 1.2E-07 2.6E-12 91.6 9.5 43 289-331 145-188 (233)
434 KOG2355 Predicted ABC-type tra 98.6 3.1E-08 6.7E-13 96.9 4.7 42 289-330 164-207 (291)
435 COG2401 ABC-type ATPase fused 98.6 1.1E-07 2.3E-12 101.3 8.9 138 173-331 406-568 (593)
436 PRK08533 flagellar accessory p 98.6 6.4E-07 1.4E-11 90.3 13.5 43 289-331 116-163 (230)
437 PRK12422 chromosomal replicati 98.6 2E-07 4.3E-12 102.7 9.9 48 289-336 201-250 (445)
438 PRK00149 dnaA chromosomal repl 98.6 3.2E-07 7E-12 101.2 11.4 48 289-336 210-259 (450)
439 TIGR00362 DnaA chromosomal rep 98.5 4.6E-07 9.9E-12 98.6 11.1 47 290-336 199-247 (405)
440 KOG0730 AAA+-type ATPase [Post 98.5 4E-08 8.8E-13 109.5 2.8 143 173-371 465-630 (693)
441 KOG0065 Pleiotropic drug resis 98.5 3.4E-07 7.3E-12 109.1 10.4 146 174-331 139-321 (1391)
442 PTZ00454 26S protease regulato 98.5 6.9E-07 1.5E-11 97.1 11.3 28 174-201 177-204 (398)
443 cd03287 ABC_MSH3_euk MutS3 hom 98.5 1.3E-06 2.7E-11 87.8 12.3 43 289-331 109-154 (222)
444 cd03241 ABC_RecN RecN ATPase i 98.5 2.7E-07 5.9E-12 95.3 7.1 40 290-330 192-232 (276)
445 TIGR01069 mutS2 MutS2 family p 98.4 1.2E-06 2.6E-11 102.4 11.6 44 289-332 401-446 (771)
446 COG0593 DnaA ATPase involved i 98.4 1.2E-06 2.6E-11 94.7 10.7 68 291-365 176-245 (408)
447 TIGR01242 26Sp45 26S proteasom 98.4 8.3E-07 1.8E-11 95.3 9.5 28 174-201 154-181 (364)
448 PF02463 SMC_N: RecF/RecN/SMC 98.4 4.5E-07 9.8E-12 89.9 6.8 41 289-329 157-198 (220)
449 PRK09087 hypothetical protein; 98.4 8.2E-07 1.8E-11 89.4 8.6 66 292-365 89-154 (226)
450 PF00004 AAA: ATPase family as 98.4 1E-06 2.2E-11 79.2 8.1 23 179-201 1-23 (132)
451 KOG0064 Peroxisomal long-chain 98.4 6.4E-07 1.4E-11 97.8 7.9 149 174-369 506-689 (728)
452 cd00009 AAA The AAA+ (ATPases 98.4 2.7E-06 5.9E-11 76.2 10.8 45 289-333 83-132 (151)
453 PRK06620 hypothetical protein; 98.4 2E-06 4.3E-11 85.9 9.9 43 290-335 85-127 (214)
454 CHL00206 ycf2 Ycf2; Provisiona 98.3 7.4E-07 1.6E-11 109.1 7.9 29 174-202 1628-1656(2281)
455 cd01120 RecA-like_NTPases RecA 98.3 6.4E-06 1.4E-10 76.0 11.6 46 289-334 84-140 (165)
456 PLN00020 ribulose bisphosphate 98.3 2.3E-06 4.9E-11 91.2 9.3 29 173-201 145-173 (413)
457 PRK03992 proteasome-activating 98.3 1.9E-06 4E-11 93.5 8.9 28 174-201 163-190 (389)
458 KOG0728 26S proteasome regulat 98.3 5.8E-06 1.3E-10 83.2 10.4 144 173-371 178-346 (404)
459 cd03285 ABC_MSH2_euk MutS2 hom 98.2 2.2E-06 4.8E-11 86.0 7.5 23 175-197 29-51 (222)
460 TIGR03420 DnaA_homol_Hda DnaA 98.2 3.3E-06 7.2E-11 83.7 8.6 46 290-335 90-137 (226)
461 KOG0735 AAA+-type ATPase [Post 98.2 2.5E-06 5.4E-11 95.9 8.4 81 289-370 759-862 (952)
462 COG1223 Predicted ATPase (AAA+ 98.2 3.3E-06 7.1E-11 85.5 7.6 28 175-202 150-177 (368)
463 PRK06067 flagellar accessory p 98.2 1.1E-05 2.4E-10 81.1 11.4 43 289-331 119-165 (234)
464 cd01124 KaiC KaiC is a circadi 98.2 3E-06 6.6E-11 81.3 6.9 44 289-332 94-141 (187)
465 TIGR01241 FtsH_fam ATP-depende 98.2 4.7E-06 1E-10 93.1 9.1 28 174-201 86-113 (495)
466 PRK00635 excinuclease ABC subu 98.2 1.3E-05 2.9E-10 99.8 13.6 65 282-364 1698-1777(1809)
467 TIGR01243 CDC48 AAA family ATP 98.2 5.2E-06 1.1E-10 97.1 9.5 28 174-201 485-512 (733)
468 smart00382 AAA ATPases associa 98.2 2.5E-05 5.5E-10 69.0 11.7 27 176-202 2-28 (148)
469 cd03286 ABC_MSH6_euk MutS6 hom 98.2 3.3E-06 7.1E-11 84.6 6.6 43 289-331 108-153 (218)
470 CHL00176 ftsH cell division pr 98.1 7.2E-06 1.6E-10 94.0 9.9 28 174-201 214-241 (638)
471 KOG0651 26S proteasome regulat 98.1 7.7E-06 1.7E-10 84.7 8.7 81 289-370 224-330 (388)
472 PRK00409 recombination and DNA 98.1 1.4E-05 3E-10 93.8 11.6 43 289-331 406-450 (782)
473 TIGR02788 VirB11 P-type DNA tr 98.1 2.5E-05 5.4E-10 82.2 12.3 28 175-202 143-170 (308)
474 PTZ00361 26 proteosome regulat 98.1 9.4E-06 2E-10 89.2 9.2 28 174-201 215-242 (438)
475 PRK08903 DnaA regulatory inact 98.1 1.9E-05 4.1E-10 78.9 10.1 43 290-332 90-133 (227)
476 CHL00195 ycf46 Ycf46; Provisio 98.1 1.4E-05 3.1E-10 89.0 9.9 28 174-201 257-284 (489)
477 cd03242 ABC_RecF RecF is a rec 98.1 3E-05 6.6E-10 79.9 11.6 40 289-331 209-249 (270)
478 PRK13695 putative NTPase; Prov 98.0 2.3E-05 4.9E-10 75.2 9.6 41 289-330 95-135 (174)
479 TIGR03689 pup_AAA proteasome A 98.0 1.5E-05 3.2E-10 89.1 9.2 28 174-201 214-241 (512)
480 KOG0731 AAA+-type ATPase conta 98.0 1.8E-05 3.8E-10 91.0 9.8 142 174-370 342-510 (774)
481 TIGR01243 CDC48 AAA family ATP 98.0 1.5E-05 3.2E-10 93.3 9.4 28 174-201 210-237 (733)
482 KOG0737 AAA+-type ATPase [Post 98.0 1.8E-05 4E-10 83.6 8.5 28 174-201 125-152 (386)
483 COG3845 ABC-type uncharacteriz 97.9 6.7E-05 1.5E-09 82.0 11.5 146 173-329 281-461 (501)
484 cd00820 PEPCK_HprK Phosphoenol 97.9 1.7E-05 3.8E-10 70.7 5.7 66 174-260 13-78 (107)
485 KOG0729 26S proteasome regulat 97.9 6.8E-05 1.5E-09 76.3 10.1 117 172-343 207-342 (435)
486 KOG0066 eIF2-interacting prote 97.9 3.8E-05 8.2E-10 82.5 8.8 51 277-330 406-468 (807)
487 KOG0652 26S proteasome regulat 97.9 6.6E-05 1.4E-09 76.1 9.7 82 289-370 263-369 (424)
488 PLN03025 replication factor C 97.9 6E-05 1.3E-09 79.5 10.0 60 290-364 99-158 (319)
489 cd01131 PilT Pilus retraction 97.9 7.1E-05 1.5E-09 73.7 9.9 25 178-202 3-27 (198)
490 COG0464 SpoVK ATPases of the A 97.9 5E-05 1.1E-09 84.8 9.5 28 174-201 274-301 (494)
491 PRK10733 hflB ATP-dependent me 97.9 3.2E-05 6.9E-10 89.2 8.2 28 174-201 183-210 (644)
492 PHA02544 44 clamp loader, smal 97.8 0.00014 3.1E-09 76.1 12.0 60 290-364 100-160 (316)
493 cd01130 VirB11-like_ATPase Typ 97.8 7.4E-05 1.6E-09 72.7 9.0 28 175-202 24-51 (186)
494 PTZ00132 GTP-binding nuclear p 97.8 0.00019 4E-09 71.0 11.6 31 289-319 169-205 (215)
495 COG0465 HflB ATP-dependent Zn 97.8 1.6E-05 3.5E-10 89.5 4.0 142 174-371 181-348 (596)
496 KOG0063 RNAse L inhibitor, ABC 97.8 0.00015 3.2E-09 78.2 10.7 118 176-318 367-503 (592)
497 KOG0063 RNAse L inhibitor, ABC 97.8 6.9E-05 1.5E-09 80.6 8.3 62 273-334 203-277 (592)
498 KOG0736 Peroxisome assembly fa 97.7 4.9E-05 1.1E-09 86.5 6.9 82 289-371 763-872 (953)
499 PRK12402 replication factor C 97.7 0.00028 6.1E-09 74.2 12.3 60 289-363 124-183 (337)
500 TIGR02903 spore_lon_C ATP-depe 97.7 0.00017 3.6E-09 82.8 10.6 27 175-201 174-200 (615)
No 1
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=100.00 E-value=2.9e-100 Score=789.41 Aligned_cols=439 Identities=39% Similarity=0.639 Sum_probs=344.0
Q ss_pred cccCCCCCCCCCCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHhhchhhhHHHhhhhhhhhhhhhhhHHHHHHHHH
Q 007851 34 RFYFPPSSTKPPGPLMQYRKLIEQGKLQHDPNQEKVALALENVLGRLEQYEKDMEEYHVNLANWEKNRENERRSLLIREA 113 (587)
Q Consensus 34 ~~~~~~~~~~~~~pl~~Y~~lv~~g~l~~D~~Q~~~~~~L~~L~~~L~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 113 (587)
+|-.........+|+..|.++|.+|.++.||+|+.++..+.+||.++.+|.+|. +.+++..+..
T Consensus 23 ~y~~~~~~~~~~tpl~~y~k~V~~g~l~~d~yq~~~~~~~~~L~~~~~e~y~p~------~~~~~~~~e~---------- 86 (467)
T KOG2383|consen 23 RYSSTAPHKFLLTPLKEYSKLVNTGTLKSDPYQRKTVSAFERLYHELIEYYDPR------LKQWSAKREE---------- 86 (467)
T ss_pred eeeeccccccccCcchHHHhHhccCcccCCchhhhhHHHHHHHHhhhhhhcCcc------ccccccchhh----------
Confidence 344444555678999999999999999999999999999999999665554332 2222221110
Q ss_pred hhhhcCCccccccccchhhHHHHhhcCCCCCCCCCccchhhhhhhhhhhccccCCCCCCCCCCcEEEEEcCCCChHHHHH
Q 007851 114 ESKQQGDLWTSVNKHRNTLIERWMFRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLM 193 (587)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkglyL~GpnGsGKTTLm 193 (587)
+.|.. + +.+.|...+..+ ..... .+.+|+|+||||.+||||||||
T Consensus 87 ------~r~i~------~-l~k~~~~~k~~~--------------------~~a~~--~~~~PkGlYlYG~VGcGKTmLM 131 (467)
T KOG2383|consen 87 ------GRWIF------E-LKKSFDDGKLDT--------------------PNASG--QPGPPKGLYLYGSVGCGKTMLM 131 (467)
T ss_pred ------hhHHH------H-HHHHHhccCCCC--------------------ccccc--CCCCCceEEEecccCcchhHHH
Confidence 11221 0 112232222211 11010 1456899999999999999999
Q ss_pred HHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHHHHHHhhhhHHHHhccH
Q 007851 194 DMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNIL 273 (587)
Q Consensus 194 ~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~~~~~~~~~~~~~~~L 273 (587)
|+|++.+++ +..+.|||||+||..+|+++|.++++.+.... ++.-.+ .-+++
T Consensus 132 DlFy~~~~~-i~rkqRvHFh~fM~~VH~r~H~~k~~~~~~~~--~~a~~~-------------------------~~Dpl 183 (467)
T KOG2383|consen 132 DLFYDALPP-IWRKQRVHFHGFMLSVHKRMHELKQEQGAEKP--GYAKSW-------------------------EIDPL 183 (467)
T ss_pred HHHhhcCCc-hhhhhhhhHHHHHHHHHHHHHHHHHhccccCc--cccccc-------------------------cCCcc
Confidence 999999987 67889999999999999999999865432111 111000 12567
Q ss_pred HHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhc
Q 007851 274 PAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLE 353 (587)
Q Consensus 274 ~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~ 353 (587)
+.+|++++ .++.|||||||+++|+++||+|.+||..|++.|+|+|+||||+|++||+||+||+.|+|||.+|+
T Consensus 184 ~~vA~eIa-------~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf~~GvVlvATSNR~P~dLYknGlQR~~F~PfI~~L~ 256 (467)
T KOG2383|consen 184 PVVADEIA-------EEAILLCFDEFQVTDVADAMILKRLFEHLFKNGVVLVATSNRAPEDLYKNGLQRENFIPFIALLE 256 (467)
T ss_pred HHHHHHHh-------hhceeeeechhhhhhHHHHHHHHHHHHHHHhCCeEEEEeCCCChHHHhhcchhhhhhhhHHHHHH
Confidence 78888887 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEEecCCchhhhhhhccccCCceEEEecCChHHHHHHHHHHHHhhcccCCcccccceeeeeCeeEeeecccCCeEEE
Q 007851 354 KHCEIIPIGSEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARF 433 (587)
Q Consensus 354 ~~~~Vv~l~~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~~~~~~~~gR~l~v~~~~~~va~f 433 (587)
++|.|+.++|++|||+... +...+||.+...+.+..++++|+.++..+.+.. +..+++|+||+|.||++|+|||+|
T Consensus 257 ~rc~vi~ldS~vDYR~~~~---~~~~~~yf~~~~d~~~~l~~~fk~~~~dq~d~~-~~~~l~v~GR~l~vpk~cg~VA~f 332 (467)
T KOG2383|consen 257 ERCKVIQLDSGVDYRRKAK---SAGENYYFISETDVETVLKEWFKLLAADQNDGT-RQRTLVVFGRKLIVPKACGGVADF 332 (467)
T ss_pred HhheEEecCCccchhhccC---CCCceeEecChhhHHHHHHHHHHHHhccCCCCC-CCcceeeecceEEecccCCCcccc
Confidence 9999999999999995432 223456555555888899999988887554433 445557899999999999999999
Q ss_pred eHHHhhCCCCChhhHHHHHhccCEEEEcCCCCCCcCChhhHhhhhhhHhhhhccceeEEEeeCCChhhhccCCCCCcccc
Q 007851 434 TFEYLCGRPVGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFD 513 (587)
Q Consensus 434 ~F~eLC~~plg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFItLID~lYe~~~kL~~sa~~~~~~Lf~~~~~~~~~d 513 (587)
||+|||++|+||+|||.||++||||||+|||+|++.+||+|||||||||+|||++|||+|||++|+++||......
T Consensus 333 tFeeLC~rPlgAaDYL~lak~fhti~v~dIP~lsl~~r~~~rRFITliD~lYd~~~rlv~sa~~p~~~Lf~~~~~~---- 408 (467)
T KOG2383|consen 333 TFEELCGRPLGAADYLGLAKNFHTIIVRDIPQLSLENRDQARRFITLIDALYDNHVRLVCSAATPLEELFQFTGHS---- 408 (467)
T ss_pred cHHHHhCCccchHHHHHHHhhcceeEeeccchhhhHHHHHHhhHhHHHHHHhhccceEEecCCCCHHHHhcccCcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999865431
Q ss_pred ccccchhhhhhc-ccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhcccccccccc
Q 007851 514 LESFQFETEIEG-GKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDG 578 (587)
Q Consensus 514 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ftg~eE~FAf~Ra~SRL~EM~s~~~~~~ 578 (587)
++..++ +.+++| ++...+..+.+.+|+|+||.|||+||+|||+||||.+|-+.
T Consensus 409 ------e~ls~s~r~~mdd------l~iks~~~~~~~mf~g~EE~FAf~RtlSRL~eMqt~~y~~~ 462 (467)
T KOG2383|consen 409 ------EALSDSPRTLMDD------LGIKSDSAGGSPMFSGEEEGFAFDRTLSRLYEMQTELYWEQ 462 (467)
T ss_pred ------cccccCcccchhh------hcccccCccccccccchHHHHHHHHHHHHHHHhhcchhccc
Confidence 111112 223333 22333344445699999999999999999999999886553
No 2
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=100.00 E-value=2.8e-88 Score=717.45 Aligned_cols=361 Identities=41% Similarity=0.702 Sum_probs=316.5
Q ss_pred CCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHhhchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHhhhhcCCcccc
Q 007851 45 PGPLMQYRKLIEQGKLQHDPNQEKVALALENVLGRLEQYEKDMEEYHVNLANWEKNRENERRSLLIREAESKQQGDLWTS 124 (587)
Q Consensus 45 ~~pl~~Y~~lv~~g~l~~D~~Q~~~~~~L~~L~~~L~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (587)
|+|.++|+++|+.|.+++||.|.+++.+|++|+++|..+.++. +.
T Consensus 1 ~tp~~~y~~~~~~~~~~~D~~q~~~~~~l~~l~~~l~~~~~~~-----------------------------~~------ 45 (362)
T PF03969_consen 1 TTPLERYQARVAQGELFPDPAQRQAIEHLDRLYQELQKYKPAR-----------------------------QS------ 45 (362)
T ss_pred CChHHHHHHHhcCCCCCCCHHHHHHHHhHHHHHHHHHhccccc-----------------------------hh------
Confidence 6899999999999999999999999999999999998765521 00
Q ss_pred ccccchhhHHHHhhcCCCCCCCCCccchhhhhhhhhhhccccCCCCCCCCCCcEEEEEcCCCChHHHHHHHHHhccCCcc
Q 007851 125 VNKHRNTLIERWMFRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV 204 (587)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~ 204 (587)
.+.+.++|+++ + ...+|+|+||||++|+|||+||++|+..++.
T Consensus 46 -----~~~~~~~~~~~-----------------------------~-~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~-- 88 (362)
T PF03969_consen 46 -----KSRLRKLFGRK-----------------------------P-PPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI-- 88 (362)
T ss_pred -----hHHHHHHhcCC-----------------------------c-cCCCCceEEEECCCCCchhHHHHHHHHhCCc--
Confidence 01122333221 1 2246899999999999999999999999984
Q ss_pred cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhh
Q 007851 205 KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQ 284 (587)
Q Consensus 205 ~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~L 284 (587)
..|.|+|||.||.++|+++++++. ..+++..+|+.+.
T Consensus 89 ~~k~R~HFh~Fm~~vh~~l~~~~~----------------------------------------~~~~l~~va~~l~--- 125 (362)
T PF03969_consen 89 KRKRRVHFHEFMLDVHSRLHQLRG----------------------------------------QDDPLPQVADELA--- 125 (362)
T ss_pred cccccccccHHHHHHHHHHHHHhC----------------------------------------CCccHHHHHHHHH---
Confidence 578999999999999999988752 1245677888886
Q ss_pred cccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 285 HADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 285 SgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
.+.+|||||||++.|+++||+|.+||+.|++.|++||+|||++|++||+||+||+.|+|||++|+++|+|++|+|+
T Consensus 126 ----~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 ----KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred ----hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccCCceEEEecCChHHHHHHHHHHHHhhcccCCcccccceeeeeCeeEeeecccCCeEEEeHHHhhCCCCC
Q 007851 365 VDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRPVG 444 (587)
Q Consensus 365 ~DyR~~~~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~~~~~~~~gR~l~v~~~~~~va~f~F~eLC~~plg 444 (587)
+|||+... ....+|++|.+..+.+.++++|..+++.. +..+.++. +.||+|.||+++++||||+|+|||++|+|
T Consensus 202 ~DyR~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~l~-v~gR~i~v~~~~~~va~F~F~eLC~~plg 275 (362)
T PF03969_consen 202 VDYRRRGA---PPAPVYFYPLDEEADAALERLFQRLTGGE--PEEPRTLE-VGGREIPVPRACGGVAWFDFDELCERPLG 275 (362)
T ss_pred Cchhhhcc---cccccccCcchHHHHHHHHHHHHHhcccc--CCCCceeE-EeeeEEeeecccCCEEEecHHHhhccCCC
Confidence 99999653 33468999999999999999999998732 33445565 58999999999999999999999999999
Q ss_pred hhhHHHHHhccCEEEEcCCCCCCcCChhhHhhhhhhHhhhhccceeEEEeeCCChhhhccCCCCCccccccccchhhhhh
Q 007851 445 AADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETEIE 524 (587)
Q Consensus 445 ~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFItLID~lYe~~~kL~~sa~~~~~~Lf~~~~~~~~~d~~~~~~~~~~~ 524 (587)
++|||+||++||||||+|||+|+..++|+|||||+|||+|||++|+|+|+|++||++||.++.
T Consensus 276 ~aDYlaLA~~F~ti~I~~VP~l~~~~~n~arRFI~LID~LYd~~v~L~~sa~~~~~~L~~~~~----------------- 338 (362)
T PF03969_consen 276 AADYLALAERFHTIFISDVPVLSESDRNEARRFITLIDVLYDRKVKLIISAAAPPDELFQGGR----------------- 338 (362)
T ss_pred HHHHHHHHHhCCEEEEcCCCCcccCChhHHHHHHHHHHHHhhCCCcEEEEcCCCHHHHHhCCC-----------------
Confidence 999999999999999999999999999999999999999999999999999999999996421
Q ss_pred cccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhcccccccccc
Q 007851 525 GGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDINDG 578 (587)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~~~~~~ftg~eE~FAf~Ra~SRL~EM~s~~~~~~ 578 (587)
..|.|+||+|||.|||+.+|.++
T Consensus 339 -------------------------------~~~~f~RT~SRL~Em~~~~y~~~ 361 (362)
T PF03969_consen 339 -------------------------------LAFEFQRTASRLSEMQSEEYLAR 361 (362)
T ss_pred -------------------------------chhhhhHHHHHHHHHhhHHHHhc
Confidence 16889999999999998887653
No 3
>COG1485 Predicted ATPase [General function prediction only]
Probab=100.00 E-value=4.2e-88 Score=694.64 Aligned_cols=356 Identities=34% Similarity=0.605 Sum_probs=313.4
Q ss_pred CCCCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHhhchhhhHHHhhhhhhhhhhhhhhHHHHHHHHHhhhhcCCcc
Q 007851 43 KPPGPLMQYRKLIEQGKLQHDPNQEKVALALENVLGRLEQYEKDMEEYHVNLANWEKNRENERRSLLIREAESKQQGDLW 122 (587)
Q Consensus 43 ~~~~pl~~Y~~lv~~g~l~~D~~Q~~~~~~L~~L~~~L~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (587)
..++|+++|.+++..|.+++||+|.+++.+|++||+++....+ .
T Consensus 7 ~~~sp~~~y~~~~~~~~~~~D~aQ~~a~~~Ldrl~~~~~~~~~--------------------------------~---- 50 (367)
T COG1485 7 PTMSPVERYAQLVPAGTFQPDPAQPAAAAALDRLYDELVAPRS--------------------------------A---- 50 (367)
T ss_pred CCCCHHHHHHHhcccCCCCCChHHHHHHHHHHHHHHHhhcccc--------------------------------c----
Confidence 4458999999999999999999999999999999996543211 0
Q ss_pred ccccccchhhHHHHhhcCCCCCCCCCccchhhhhhhhhhhccccCCCCCCCCCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 123 TSVNKHRNTLIERWMFRKNPENVEPGVGRWVSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+.+.++|++ .+.+++|+||||++|+|||+||++|+..+|.
T Consensus 51 -------~~~l~~lf~r--------------------------------~~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 51 -------RKALGWLFGR--------------------------------DHGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred -------cccccccccc--------------------------------CCCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 0012222321 1247899999999999999999999999985
Q ss_pred cccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhh
Q 007851 203 IVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLV 282 (587)
Q Consensus 203 ~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~ 282 (587)
..|.|+|||.||.++|++++.+.+ ..+++..+|+++.
T Consensus 92 --~~k~R~HFh~FM~~vH~~l~~l~g----------------------------------------~~dpl~~iA~~~~- 128 (367)
T COG1485 92 --ERKRRLHFHRFMARVHQRLHTLQG----------------------------------------QTDPLPPIADELA- 128 (367)
T ss_pred --cccccccHHHHHHHHHHHHHHHcC----------------------------------------CCCccHHHHHHHH-
Confidence 578999999999999999988752 1255778888887
Q ss_pred hhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecC
Q 007851 283 DQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG 362 (587)
Q Consensus 283 ~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~ 362 (587)
.+.+|||||||++.||++||+|.+||+.|+++|+++|+|||.+|++||+||+||++|+|+|++|+++|+|+.+|
T Consensus 129 ------~~~~vLCfDEF~VtDI~DAMiL~rL~~~Lf~~GV~lvaTSN~~P~~LY~dGlqR~~FLP~I~li~~~~~v~~vD 202 (367)
T COG1485 129 ------AETRVLCFDEFEVTDIADAMILGRLLEALFARGVVLVATSNTAPDNLYKDGLQRERFLPAIDLIKSHFEVVNVD 202 (367)
T ss_pred ------hcCCEEEeeeeeecChHHHHHHHHHHHHHHHCCcEEEEeCCCChHHhcccchhHHhhHHHHHHHHHheEEEEec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhhhhhhccccCCceEEEecCChHHHHHHHHHHHHhhcccCCcccccceeeeeCeeEeeecccCCeEEEeHHHhhCCC
Q 007851 363 SEVDYRRLIAQRSIDQVHYFWPLDDNAVRQLEAMWCQVTNHFGGKIISSTIPVMFGRTLEVPQSCNGVARFTFEYLCGRP 442 (587)
Q Consensus 363 ~~~DyR~~~~~~~~~~~~y~~p~~~~~~~~l~~~f~~l~~~~~~~~~~~~~~~~~gR~l~v~~~~~~va~f~F~eLC~~p 442 (587)
+++|||++. ......|++|++.++++.|+++|..+++.+ ...+..+. +.||+|.||.++++++||+|.+||+.|
T Consensus 203 ~~~DYR~r~---l~~a~~y~~Pl~~~~~~~l~~~~~~ls~~~--~~~~~~l~-i~gR~i~~~~~~~~~~~f~f~~Lc~~p 276 (367)
T COG1485 203 GPVDYRLRK---LEQAPVYLTPLDAEAEAALDKLWAALSDGA--PEAAANLE-IKGREIRVPAVAGGLLWFDFAQLCEAP 276 (367)
T ss_pred CCccccccc---cccCceeecCCcHHHHHHHHHHHHHhccCC--ccCCchhh-ccCceeecccccCcchhccHHHHhhCc
Confidence 999999975 334469999999999999999999998732 23344565 589999999999999999999999999
Q ss_pred CChhhHHHHHhccCEEEEcCCCCCCcCChhhHhhhhhhHhhhhccceeEEEeeCCChhhhccCCCCCccccccccchhhh
Q 007851 443 VGAADYIAVAHNYHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAASSIDDLFQGTEEGTLFDLESFQFETE 522 (587)
Q Consensus 443 lg~aDYl~la~~f~ti~i~~VP~l~~~~~n~arRFItLID~lYe~~~kL~~sa~~~~~~Lf~~~~~~~~~d~~~~~~~~~ 522 (587)
+|+.|||+||++||||+|+|||+|+...+|+|||||+|||+|||+++||++||++||++||.++.
T Consensus 277 ~s~~DYl~l~~~f~tv~l~~vp~m~~~~~~~arRFI~lVD~lYD~~vkL~~Sae~~~~~Ly~~~~--------------- 341 (367)
T COG1485 277 RSASDYLALAERFHTVFLTDVPQMDPLDRDEARRFIALVDELYDRGVKLVASAEVPLNELYQGGR--------------- 341 (367)
T ss_pred CCHHHHHHHHhhccEEEEcCCCCCChhhhHHHHHHHHHHHHHHhcCCcEEEEccCCHHHhccCch---------------
Confidence 99999999999999999999999999999999999999999999999999999999999997531
Q ss_pred hhcccccchhhccCCCCCCCCCCCcccCCcchhHHHhHhhhHhhhhcccccccc
Q 007851 523 IEGGKLRRDVLAEGTVSSGGAPAGIVSMLSGQEELFAFRRAWFVTVSTLVVDIN 576 (587)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ftg~eE~FAf~Ra~SRL~EM~s~~~~ 576 (587)
-.|+|+||+|||.||||.+|.
T Consensus 342 ---------------------------------~afeF~Rt~SRL~EMqS~~yl 362 (367)
T COG1485 342 ---------------------------------LAFEFQRTLSRLQEMQSEEYL 362 (367)
T ss_pred ---------------------------------hhhHHHHHHHHHHHHHHHHhh
Confidence 179999999999999987764
No 4
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.89 E-value=3.5e-23 Score=201.88 Aligned_cols=148 Identities=18% Similarity=0.196 Sum_probs=114.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
...|+.+.|+||+|||||||++|+.++.++ .+|.|.+++........+.++ ++.+|+|||+ .++|+++|
T Consensus 25 v~~Gevv~iiGpSGSGKSTlLRclN~LE~~---~~G~I~i~g~~~~~~~~~~~~-------R~~vGmVFQ~-fnLFPHlT 93 (240)
T COG1126 25 VEKGEVVVIIGPSGSGKSTLLRCLNGLEEP---DSGSITVDGEDVGDKKDILKL-------RRKVGMVFQQ-FNLFPHLT 93 (240)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHCCcCC---CCceEEECCEeccchhhHHHH-------HHhcCeeccc-ccccccch
Confidence 357999999999999999999999999885 245566655211000123333 3568999998 68999999
Q ss_pred HHHHHHHHHhh-hh--HHH---------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 253 VMEWVAAEEKY-KQ--EVQ---------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 253 V~eni~~~~~~-~~--~~~---------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
|.||+.++... .+ +.+ ....|.+.++.++.+||||| .+|++++|||||+ |||....
T Consensus 94 vleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~ 173 (240)
T COG1126 94 VLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVG 173 (240)
T ss_pred HHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHH
Confidence 99999987542 11 111 12245677999999999997 7999999999999 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..++..|.+.|.|+|+.+|..
T Consensus 174 EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 174 EVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred HHHHHHHHHHHcCCeEEEEechh
Confidence 99999999999999887777754
No 5
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.88 E-value=9.2e-23 Score=195.11 Aligned_cols=148 Identities=17% Similarity=0.172 Sum_probs=116.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHh-hhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLW-KNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~-~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.+||.||+|+||||||++|++...| +. +.|.|+++ ++. +++ .+....++.+|+|||+ ..++++.
T Consensus 25 i~~Gef~fl~GpSGAGKSTllkLi~~~e~p-t~--G~i~~~~~--dl~----~l~~~~iP~LRR~IGvVFQD-~rLL~~~ 94 (223)
T COG2884 25 IPKGEFVFLTGPSGAGKSTLLKLIYGEERP-TR--GKILVNGH--DLS----RLKGREIPFLRRQIGVVFQD-FRLLPDR 94 (223)
T ss_pred ecCceEEEEECCCCCCHHHHHHHHHhhhcC-CC--ceEEECCe--ecc----cccccccchhhheeeeEeee-ccccccc
Confidence 357899999999999999999999999986 34 45556654 222 111 1223345789999998 5788999
Q ss_pred cHHHHHHHHHhhhhHHH------Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 252 KVMEWVAAEEKYKQEVQ------MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~------~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
||+||+++++...+... .. ..|..-++.++.+||||+ .+|.||+.||||- +|+..+.
T Consensus 95 tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~ 174 (223)
T COG2884 95 TVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSW 174 (223)
T ss_pred hHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHH
Confidence 99999999987655311 11 234556888899999996 7999999999998 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.++++|+++...|++|++++|.
T Consensus 175 ~im~lfeeinr~GtTVl~ATHd 196 (223)
T COG2884 175 EIMRLFEEINRLGTTVLMATHD 196 (223)
T ss_pred HHHHHHHHHhhcCcEEEEEecc
Confidence 9999999999999977666664
No 6
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.87 E-value=1.7e-22 Score=201.60 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=114.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.+.|+||+|||||||+++++|+..| . .|.|...+- .+ ......++||||+ ..++|+.|
T Consensus 26 v~~GEfvsilGpSGcGKSTLLriiAGL~~p-~--~G~V~~~g~--~v-----------~~p~~~~~~vFQ~-~~LlPW~T 88 (248)
T COG1116 26 VEKGEFVAILGPSGCGKSTLLRLIAGLEKP-T--SGEVLLDGR--PV-----------TGPGPDIGYVFQE-DALLPWLT 88 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCc--cc-----------CCCCCCEEEEecc-Ccccchhh
Confidence 357999999999999999999999999986 2 345555441 11 1224578999998 56899999
Q ss_pred HHHHHHHHHhhhh--HHH----H-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--EVQ----M-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~~~----~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+||.++....+ ..+ . ...|...+++++.+||||| .+|+||++|||+. ||..++..
T Consensus 89 v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~ 168 (248)
T COG1116 89 VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREE 168 (248)
T ss_pred HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHH
Confidence 9999999887643 111 1 1234567899999999997 7999999999998 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCCccccc
Q 007851 310 LSGIVSRLLST-GTVLVATSNRAPWDLN 336 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~PedLy 336 (587)
|.+.+.+++++ +.|||+.||...|.+|
T Consensus 169 lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 169 LQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred HHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 99999999976 6666666665555533
No 7
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.86 E-value=6.9e-22 Score=207.03 Aligned_cols=146 Identities=18% Similarity=0.150 Sum_probs=116.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.+.|+|||||||||||++|+|+..+ .+|+|.+.+- ++.. ..+..+.+++|||+ .+++|+|||
T Consensus 27 ~~Gef~vllGPSGcGKSTlLr~IAGLe~~---~~G~I~i~g~--~vt~--------l~P~~R~iamVFQ~-yALyPhmtV 92 (338)
T COG3839 27 EDGEFVVLLGPSGCGKSTLLRMIAGLEEP---TSGEILIDGR--DVTD--------LPPEKRGIAMVFQN-YALYPHMTV 92 (338)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCE--ECCC--------CChhHCCEEEEeCC-ccccCCCcH
Confidence 47899999999999999999999999986 3467777662 2221 12234689999998 589999999
Q ss_pred HHHHHHHHhhhhH--HH----H-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--VQ----M-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~----~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
++|++|+++..+. .+ . .-.|..++++.+.+||||| .+|++++||||.+ ||...+..+
T Consensus 93 ~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~m 172 (338)
T COG3839 93 YENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLM 172 (338)
T ss_pred HHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHH
Confidence 9999999987641 11 1 1235678899999999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCCcc
Q 007851 311 SGIVSRLLST-GTVLVATSNRAPW 333 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~Pe 333 (587)
...|+.+.++ |.|+|..||...|
T Consensus 173 r~ei~~lh~~l~~T~IYVTHDq~E 196 (338)
T COG3839 173 RSEIKKLHERLGTTTIYVTHDQVE 196 (338)
T ss_pred HHHHHHHHHhcCCcEEEEcCCHHH
Confidence 9999999876 7766666665433
No 8
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.86 E-value=1.7e-21 Score=198.39 Aligned_cols=147 Identities=16% Similarity=0.207 Sum_probs=115.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh-HHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f-m~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+.|+.++|+||||||||||+++|+|+..| ..|+|.|++- +.+..+ + ....+++|+|||++ .++++|
T Consensus 25 i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p---~~G~I~~~~~~l~D~~~-~-------~~~~R~VGfvFQ~Y-ALF~Hm 92 (345)
T COG1118 25 IKSGELVALLGPSGAGKSTLLRIIAGLETP---DAGRIRLNGRVLFDVSN-L-------AVRDRKVGFVFQHY-ALFPHM 92 (345)
T ss_pred ecCCcEEEEECCCCCcHHHHHHHHhCcCCC---CCceEEECCEeccchhc-c-------chhhcceeEEEech-hhcccc
Confidence 357899999999999999999999999986 3578888873 113322 1 11246799999995 599999
Q ss_pred cHHHHHHHHHhhhh--------HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 252 KVMEWVAAEEKYKQ--------EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 252 tV~eni~~~~~~~~--------~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
||.+||+|+++... ..... ..|..++++++.+||||| .+|++|+||||+. +|...
T Consensus 93 tVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~v 172 (345)
T COG1118 93 TVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 172 (345)
T ss_pred hHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHH
Confidence 99999999985431 01111 134678999999999997 6999999999998 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..|.+.|+++.++ |++.|++||..
T Consensus 173 r~~lr~wLr~~~~~~~~ttvfVTHD~ 198 (345)
T COG1118 173 RKELRRWLRKLHDRLGVTTVFVTHDQ 198 (345)
T ss_pred HHHHHHHHHHHHHhhCceEEEEeCCH
Confidence 99999999999987 87665555543
No 9
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.86 E-value=1.7e-21 Score=193.73 Aligned_cols=149 Identities=17% Similarity=0.155 Sum_probs=110.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh-HHHHH-HHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKIN-EHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f-m~~v~-~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
...|+.+.|+||+||||||||+++.|+..| +. +.|.+.+. +.... +.....+ ++.+|+|||+ .++++.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~p-t~--G~v~i~g~d~~~l~~~~~~~~R------~~~iGfvFQ~-~nLl~~ 97 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKP-TS--GEVLINGKDLTKLSEKELAKLR------RKKIGFVFQN-FNLLPD 97 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCC-CC--ceEEECCEEcCcCCHHHHHHHH------HHhEEEECcc-CCCCCC
Confidence 357999999999999999999999999986 33 45555552 11111 1222222 3579999998 688999
Q ss_pred CcHHHHHHHHHhhhhHH--H----Hhc-----cHHHHHh-HhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 251 SKVMEWVAAEEKYKQEV--Q----MKN-----ILPAVAD-KFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 251 ~tV~eni~~~~~~~~~~--~----~~~-----~L~~la~-~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+||.|||.+++.+.+.. . ... .+.+... +++.+||||| .+|+||+.||||. ||...
T Consensus 98 ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t 177 (226)
T COG1136 98 LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKT 177 (226)
T ss_pred CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHH
Confidence 99999999876554321 0 111 2333333 7788999997 7999999999998 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.++|..+.++ |++||+.||.+
T Consensus 178 ~~~V~~ll~~~~~~~g~tii~VTHd~ 203 (226)
T COG1136 178 AKEVLELLRELNKERGKTIIMVTHDP 203 (226)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 99999999999876 87766666654
No 10
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.85 E-value=6.4e-22 Score=208.31 Aligned_cols=144 Identities=20% Similarity=0.148 Sum_probs=113.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.+.|+|||||||||||++|+|...| ..|+|.+++ .++.. ....++.+|+|||+ .++||+||
T Consensus 28 i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p---~~G~I~l~G--~~i~~--------lpp~kR~ig~VFQ~-YALFPHlt 93 (352)
T COG3842 28 IKKGEFVTLLGPSGCGKTTLLRMIAGFEQP---SSGEILLDG--EDITD--------VPPEKRPIGMVFQS-YALFPHMT 93 (352)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECC--EECCC--------CChhhcccceeecC-cccCCCCc
Confidence 357899999999999999999999999986 345677766 23221 23345789999998 58999999
Q ss_pred HHHHHHHHHhhhhH---H----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 253 VMEWVAAEEKYKQE---V----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 253 V~eni~~~~~~~~~---~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
|.+||+|+++.... . ... ..+..++++++.+||||| .+|+||+||||.+ ||..-+.
T Consensus 94 V~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~ 173 (352)
T COG3842 94 VEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLRE 173 (352)
T ss_pred HHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHH
Confidence 99999999884321 1 111 235678999999999997 6999999999998 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
.+..-++++.++ |++.|+.||.
T Consensus 174 ~mr~Elk~lq~~~giT~i~VTHD 196 (352)
T COG3842 174 QMRKELKELQRELGITFVYVTHD 196 (352)
T ss_pred HHHHHHHHHHHhcCCeEEEEECC
Confidence 999999888765 8865555554
No 11
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.85 E-value=5.3e-21 Score=189.18 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=111.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
...|+.+.|+||+||||||||++|.|+++| .+|+++++..+ +.+ +.+ .+..+.++++|++||+ .++|.++|
T Consensus 31 V~~Gei~~iiGgSGsGKStlLr~I~Gll~P-~~GeI~i~G~~----i~~-ls~--~~~~~ir~r~GvlFQ~-gALFsslt 101 (263)
T COG1127 31 VPRGEILAILGGSGSGKSTLLRLILGLLRP-DKGEILIDGED----IPQ-LSE--EELYEIRKRMGVLFQQ-GALFSSLT 101 (263)
T ss_pred ecCCcEEEEECCCCcCHHHHHHHHhccCCC-CCCeEEEcCcc----hhc-cCH--HHHHHHHhheeEEeec-cccccccc
Confidence 357899999999999999999999999997 35555553332 211 100 0111234678999997 68888999
Q ss_pred HHHHHHHHHhhhhH---HHHh---------ccHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYKQE---VQMK---------NILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~~~---~~~~---------~~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
|.|||+|+++.+.. .... ..|. ..++.++.+||||+ .+|+||++||||+ +||..+
T Consensus 102 V~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a 181 (263)
T COG1127 102 VFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISA 181 (263)
T ss_pred hhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchH
Confidence 99999998765431 1111 1222 34899999999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 308 VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+-+|+..|.+. |.|+|+.||..
T Consensus 182 ~~~~~LI~~L~~~lg~T~i~VTHDl 206 (263)
T COG1127 182 GVIDELIRELNDALGLTVIMVTHDL 206 (263)
T ss_pred HHHHHHHHHHHHhhCCEEEEEECCh
Confidence 9999999999886 77666656654
No 12
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=8.4e-21 Score=193.64 Aligned_cols=146 Identities=17% Similarity=0.188 Sum_probs=115.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.+.|+.++|+|.+|+|||||++||.++..| .+| +|..++ .++. ..+... ++.+||+||+ .+++
T Consensus 29 I~~GeI~GIIG~SGAGKSTLiR~iN~Le~P-tsG--~v~v~G--~di~~l~~~~Lr~~-------R~~IGMIFQh-FnLL 95 (339)
T COG1135 29 IPKGEIFGIIGYSGAGKSTLLRLINLLERP-TSG--SVFVDG--QDLTALSEAELRQL-------RQKIGMIFQH-FNLL 95 (339)
T ss_pred EcCCcEEEEEcCCCCcHHHHHHHHhccCCC-CCc--eEEEcC--EecccCChHHHHHH-------HhhccEEecc-cccc
Confidence 357999999999999999999999999886 344 454444 2221 122222 3578999998 5778
Q ss_pred CCCcHHHHHHHHHhhhhH--HHH----h-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 249 FDSKVMEWVAAEEKYKQE--VQM----K-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~--~~~----~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
...||.+||+|++...+. .+. . ..|.+.+++++.+||||| .+|+||+.||+|+ |||.
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence 889999999999887652 111 1 134567899999999998 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
....+..||+.+.++ |.|||+.+|-+
T Consensus 176 TT~sIL~LL~~In~~lglTIvlITHEm 202 (339)
T COG1135 176 TTQSILELLKDINRELGLTIVLITHEM 202 (339)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEechH
Confidence 999999999999875 88888877753
No 13
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.84 E-value=1.3e-20 Score=195.91 Aligned_cols=146 Identities=14% Similarity=0.116 Sum_probs=112.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++++|.+.| . +|+|.+.+. ++....... .+.+||++|++ .+++.+||
T Consensus 29 ~~Gei~gllG~NGAGKTTllk~l~gl~~p-~--~G~i~i~G~--~~~~~~~~~-------~~~igy~~~~~-~~~~~lT~ 95 (293)
T COG1131 29 EPGEIFGLLGPNGAGKTTLLKILAGLLKP-T--SGEILVLGY--DVVKEPAKV-------RRRIGYVPQEP-SLYPELTV 95 (293)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC-C--ceEEEEcCE--eCccCHHHH-------HhheEEEccCC-CCCccccH
Confidence 47899999999999999999999999986 3 455555542 221111111 24689999984 48889999
Q ss_pred HHHHHHHHhhhhHH------HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQEV------QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~~------~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+||+.+....++.. .... .+...+++.+..||+|+ .+|+||||||||+ +|+..+..+
T Consensus 96 ~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~ 175 (293)
T COG1131 96 RENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREI 175 (293)
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHH
Confidence 99999987765421 1111 12333467788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCC-cEEEEecCCCc
Q 007851 311 SGIVSRLLSTG-TVLVATSNRAP 332 (587)
Q Consensus 311 ~~Ll~~L~~~G-~vvV~TSn~~P 332 (587)
+++|+.+.++| ++|++|||...
T Consensus 176 ~~~l~~l~~~g~~tvlissH~l~ 198 (293)
T COG1131 176 WELLRELAKEGGVTILLSTHILE 198 (293)
T ss_pred HHHHHHHHhCCCcEEEEeCCcHH
Confidence 99999999987 68999999753
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=1.4e-20 Score=190.46 Aligned_cols=146 Identities=18% Similarity=0.171 Sum_probs=113.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++|+|.++| .+|.|++++ .+++. + ...+..+.++|++|.. ..++.+||
T Consensus 26 ~~G~i~~iiGpNG~GKSTLLk~l~g~l~p---~~G~V~l~g--~~i~~----~--~~kelAk~ia~vpQ~~-~~~~~~tV 93 (258)
T COG1120 26 PKGEITGILGPNGSGKSTLLKCLAGLLKP---KSGEVLLDG--KDIAS----L--SPKELAKKLAYVPQSP-SAPFGLTV 93 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCC---CCCEEEECC--Cchhh----c--CHHHHhhhEEEeccCC-CCCCCcEE
Confidence 46899999999999999999999999986 356787776 33432 1 1123346799999974 67788999
Q ss_pred HHHHHHHHhh----hh---HH---HH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKY----KQ---EV---QM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~----~~---~~---~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.|.|.++..- .. .. .. ...+..++++.+.+||||| ++|+||+|||||+ ||+..
T Consensus 94 ~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~ 173 (258)
T COG1120 94 YELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAH 173 (258)
T ss_pred eehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHH
Confidence 9999886421 11 11 11 1234678899999999997 8999999999999 99999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+..++++++++.+ +|.++|++.|..
T Consensus 174 Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 174 QIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 9999999999995 588888888864
No 15
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.4e-20 Score=183.16 Aligned_cols=150 Identities=17% Similarity=0.189 Sum_probs=107.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCC--cccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEG--IVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~--~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+..+..+|+||+|||||||+++|...... ...-.|.|.|++ .++... .....+.++.+|+|||. +.+|+
T Consensus 30 i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g--~ni~~~----~~d~~~lRr~vGMVFQk--PnPFp 101 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDG--KNIYDP----KVDVVELRRRVGMVFQK--PNPFP 101 (253)
T ss_pred ccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECC--eeccCC----CCCHHHHHHHheeeccC--CCCCC
Confidence 346799999999999999999999865431 122346777766 344321 11112234678999996 45566
Q ss_pred CcHHHHHHHHHhhhhHHH--Hhc----------cHHHHHhH---hhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 251 SKVMEWVAAEEKYKQEVQ--MKN----------ILPAVADK---FLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 251 ~tV~eni~~~~~~~~~~~--~~~----------~L~~la~~---l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
+|++|||+++.+..+... .++ ...++.++ .+..||||| .+|+||++|||++ ||
T Consensus 102 ~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALD 181 (253)
T COG1117 102 MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALD 181 (253)
T ss_pred chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccC
Confidence 999999999988765321 111 11233333 356899997 6999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
|.+.+.+-+|+.+|.++=++||+|||.
T Consensus 182 PIsT~kIEeLi~eLk~~yTIviVTHnm 208 (253)
T COG1117 182 PISTLKIEELITELKKKYTIVIVTHNM 208 (253)
T ss_pred chhHHHHHHHHHHHHhccEEEEEeCCH
Confidence 999999999999998776677788774
No 16
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.4e-20 Score=188.07 Aligned_cols=144 Identities=15% Similarity=0.180 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccC-CCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWI-TNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~-~~~~~~~t 252 (587)
.+|+.+.|+||||+|||||++++.|+++| . +|+|.+.+. .+. .. .....+|||+|.. ...-++.|
T Consensus 28 ~~G~~~~iiGPNGaGKSTLlK~iLGll~p-~--~G~i~~~g~--~~~----~~-----~~~~~IgYVPQ~~~~d~~fP~t 93 (254)
T COG1121 28 EKGEITALIGPNGAGKSTLLKAILGLLKP-S--SGEIKIFGK--PVR----KR-----RKRLRIGYVPQKSSVDRSFPIT 93 (254)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCcC-C--cceEEEccc--ccc----cc-----ccCCeEEEcCcccccCCCCCcC
Confidence 46899999999999999999999999986 2 455554431 111 00 1135799999964 34566789
Q ss_pred HHHHHHHHHhhhh----------HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQ----------EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~----------~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+|.+..+...+. ..... ..+.+++++.+++||||| .+|+||+||||++ +|+.
T Consensus 94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~ 173 (254)
T COG1121 94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173 (254)
T ss_pred HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH
Confidence 9999988632211 01111 235678999999999997 8999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.++|.+|.++|++|+++||..
T Consensus 174 ~~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 174 GQKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 99999999999999999888777763
No 17
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=2.4e-20 Score=185.59 Aligned_cols=172 Identities=20% Similarity=0.172 Sum_probs=125.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
...|+.+.|+||+||||||+|+||.+++.| ++ |.|.+++- ++.. ...++ ++.+|||.|. ..+||++
T Consensus 24 I~~gef~vliGpSGsGKTTtLkMINrLiep-t~--G~I~i~g~--~i~~~d~~~L-------Rr~IGYviQq-igLFPh~ 90 (309)
T COG1125 24 IEEGEFLVLIGPSGSGKTTTLKMINRLIEP-TS--GEILIDGE--DISDLDPVEL-------RRKIGYVIQQ-IGLFPHL 90 (309)
T ss_pred ecCCeEEEEECCCCCcHHHHHHHHhcccCC-CC--ceEEECCe--ecccCCHHHH-------HHhhhhhhhh-cccCCCc
Confidence 357899999999999999999999999986 34 45555552 2211 11223 3568999986 7899999
Q ss_pred cHHHHHHHHHhhhh--HH----HHhc-----cH--HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 252 KVMEWVAAEEKYKQ--EV----QMKN-----IL--PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 252 tV~eni~~~~~~~~--~~----~~~~-----~L--~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
||.|||+......+ +. ...+ .| .+++++++.+||||| .+|+||++|||+. +|+-.
T Consensus 91 Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~ 170 (309)
T COG1125 91 TVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPIT 170 (309)
T ss_pred cHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhh
Confidence 99999998655432 11 1111 12 358999999999997 7999999999998 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchh
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD 366 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~D 366 (587)
+..|.+.|.++.++ |.|||+.||...|.+.-+ ..|.++ ..++++..+.+.+
T Consensus 171 R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLa--------dri~vm-~~G~i~Q~~~P~~ 222 (309)
T COG1125 171 RKQLQEEIKELQKELGKTIVFVTHDIDEALKLA--------DRIAVM-DAGEIVQYDTPDE 222 (309)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhh--------ceEEEe-cCCeEEEeCCHHH
Confidence 99999999999876 888888888765553321 123333 4566666666543
No 18
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=6.2e-20 Score=184.70 Aligned_cols=147 Identities=16% Similarity=0.157 Sum_probs=113.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++++|+++|. . +.|.+++........+ ...++.+|+|||++...++..||
T Consensus 28 ~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~-~--G~v~~~g~~~~~~~~~-------~~~~~~vG~VfQnpd~q~~~~tV 97 (235)
T COG1122 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPT-S--GEVLVDGLDTSSEKSL-------LELRQKVGLVFQNPDDQLFGPTV 97 (235)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCcCcCC-C--CEEEECCeeccchhhH-------HHhhcceEEEEECcccccccCcH
Confidence 468999999999999999999999999863 3 4555444211100111 12346799999999999999999
Q ss_pred HHHHHHHHhhhhHH--HH---------hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQEV--QM---------KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~~--~~---------~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+.++|+....+.. +. ...+..+.++.+.+||||| .+|++|+|||||+ +|+.....+
T Consensus 98 ~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l 177 (235)
T COG1122 98 EDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRREL 177 (235)
T ss_pred HHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99999987754421 11 1234556788889999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCC
Q 007851 311 SGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
.+++.+|... |.+||+.||+
T Consensus 178 ~~~l~~L~~~~~~tii~~tHd 198 (235)
T COG1122 178 LELLKKLKEEGGKTIIIVTHD 198 (235)
T ss_pred HHHHHHHHhcCCCeEEEEeCc
Confidence 9999999988 5666666665
No 19
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.81 E-value=4.6e-20 Score=192.84 Aligned_cols=147 Identities=19% Similarity=0.177 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .. |.|.+++. ++...... .++.+|+++|+ ..+++.+||
T Consensus 31 ~~Gei~gllGpNGaGKSTLl~~l~Gl~~p-~~--G~v~i~G~--~~~~~~~~-------~~~~ig~v~q~-~~~~~~~tv 97 (306)
T PRK13537 31 QRGECFGLLGPNGAGKTTTLRMLLGLTHP-DA--GSISLCGE--PVPSRARH-------ARQRVGVVPQF-DNLDPDFTV 97 (306)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC-Cc--eEEEECCE--ecccchHH-------HHhcEEEEecc-CcCCCCCcH
Confidence 47899999999999999999999999986 33 45555542 22111111 13568999997 456677999
Q ss_pred HHHHHHHHhhhhH--H----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--V----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~--~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.+.....+. . ... ..+...+++.+.+||+|+ .+|++|+||||++ +|+..+..+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l 177 (306)
T PRK13537 98 RENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLM 177 (306)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHH
Confidence 9999875443221 1 111 123445677788999997 8999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCcc
Q 007851 311 SGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
.+++.++.++|.+||+|||...+
T Consensus 178 ~~~l~~l~~~g~till~sH~l~e 200 (306)
T PRK13537 178 WERLRSLLARGKTILLTTHFMEE 200 (306)
T ss_pred HHHHHHHHhCCCEEEEECCCHHH
Confidence 99999998889899898887643
No 20
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.81 E-value=4.8e-19 Score=174.93 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=113.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.++|+.+.|+|++|+||||||+++.|+.++ ..+.|+|++. ++. +.++++ ++.+||+||+ .++.
T Consensus 27 I~~GE~VaiIG~SGaGKSTLLR~lngl~d~---t~G~i~~~g~--~i~~~~~k~lr~~-------r~~iGmIfQ~-~nLv 93 (258)
T COG3638 27 INQGEMVAIIGPSGAGKSTLLRSLNGLVDP---TSGEILFNGV--QITKLKGKELRKL-------RRDIGMIFQQ-FNLV 93 (258)
T ss_pred eCCCcEEEEECCCCCcHHHHHHHHhcccCC---CcceEEeccc--chhccchHHHHHH-------HHhceeEecc-CCcc
Confidence 357999999999999999999999998875 3468888873 332 223333 3578999997 6888
Q ss_pred CCCcHHHHHHHHHhhhh-----------HHHH--------hccHHHHHhHhhhhhcccC-----------CCccEEEEeC
Q 007851 249 FDSKVMEWVAAEEKYKQ-----------EVQM--------KNILPAVADKFLVDQHADQ-----------RGASILCFDE 298 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~-----------~~~~--------~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDE 298 (587)
+.++|.+|+..+...+. +.+. ...+.+.|-..+.+||||| ++|+||+.||
T Consensus 94 ~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADE 173 (258)
T COG3638 94 PRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADE 173 (258)
T ss_pred cccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCC
Confidence 99999999987643211 1111 1123455667788999997 7999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCC
Q 007851 299 IQT-VDVFAIVALSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 299 Pt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
|.+ |||..+..++++|+.+.++ |.|+|++.|.
T Consensus 174 PvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 174 PVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred cccccChhhHHHHHHHHHHHHHHcCCEEEEEech
Confidence 998 9999999999999999875 8899998885
No 21
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.81 E-value=8.5e-20 Score=190.36 Aligned_cols=145 Identities=14% Similarity=0.101 Sum_probs=108.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . +|.|.+++. ++...... .++.+|+++|+ ..+++.+||
T Consensus 17 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~~~-------~~~~i~~~~q~-~~~~~~~tv 83 (302)
T TIGR01188 17 REGEVFGFLGPNGAGKTTTIRMLTTLLRP-T--SGTARVAGY--DVVREPRK-------VRRSIGIVPQY-ASVDEDLTG 83 (302)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--ceEEEECCE--EcccCHHH-------HHhhcEEecCC-CCCCCCCcH
Confidence 47899999999999999999999999986 2 456666552 22110011 12458999997 456777999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. ... ..+...+++.+.+||||+ .+|++|+||||++ +|+..+..+
T Consensus 84 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 163 (302)
T TIGR01188 84 RENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAI 163 (302)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999987644321 00 111 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++..+.++|.+||++||..
T Consensus 164 ~~~l~~~~~~g~tvi~~sH~~ 184 (302)
T TIGR01188 164 WDYIRALKEEGVTILLTTHYM 184 (302)
T ss_pred HHHHHHHHhCCCEEEEECCCH
Confidence 999999988888888888864
No 22
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.80 E-value=2.9e-19 Score=172.63 Aligned_cols=148 Identities=14% Similarity=0.056 Sum_probs=116.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.++|.||||+||||++++|++++.| .+|+..| +++ +..+.... .++.+|.++ ....++..+|+
T Consensus 26 e~Gei~GlLG~NGAGKTT~LRmiatlL~P-~~G~v~i--dg~--d~~~~p~~-------vrr~IGVl~-~e~glY~RlT~ 92 (245)
T COG4555 26 EEGEITGLLGENGAGKTTLLRMIATLLIP-DSGKVTI--DGV--DTVRDPSF-------VRRKIGVLF-GERGLYARLTA 92 (245)
T ss_pred ccceEEEEEcCCCCCchhHHHHHHHhccC-CCceEEE--eec--ccccChHH-------Hhhhcceec-CCcChhhhhhH
Confidence 36899999999999999999999999986 4555554 443 22221112 235688888 55788899999
Q ss_pred HHHHHHHHhhhhHHH-----------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQ-----------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~~~-----------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+||+.|....++... ....+.+.+++.++++|.|+ ++|++|+||||++ +|+.....+
T Consensus 93 rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~ 172 (245)
T COG4555 93 RENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF 172 (245)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHH
Confidence 999998776554211 11235678888999999996 8999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCccc
Q 007851 311 SGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
.+++.++.+.|.+||++||.+++.
T Consensus 173 ~dfi~q~k~egr~viFSSH~m~Ev 196 (245)
T COG4555 173 HDFIKQLKNEGRAVIFSSHIMQEV 196 (245)
T ss_pred HHHHHHhhcCCcEEEEecccHHHH
Confidence 999999999999999999987653
No 23
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.2e-19 Score=193.39 Aligned_cols=144 Identities=19% Similarity=0.149 Sum_probs=111.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ ..|.|.+++. ++.. . ....+.++|+||++ .+++++||
T Consensus 28 ~~Ge~~~llG~sGsGKSTLLr~iaGl~~p---~~G~I~~~g~--~i~~----~----~~~~r~ig~v~Q~~-~lfp~~tv 93 (356)
T PRK11650 28 ADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGR--VVNE----L----EPADRDIAMVFQNY-ALYPHMSV 93 (356)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCE--ECCC----C----CHHHCCEEEEeCCc-cccCCCCH
Confidence 46899999999999999999999999985 3467777662 2211 0 11125789999984 67788999
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ . .... ..+..++++.+.+||||| .+|+||+||||++ +|+..+..|
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l 173 (356)
T PRK11650 94 RENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQM 173 (356)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 999998865321 1 1111 134567888899999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+.+.++ |+++|++||..
T Consensus 174 ~~~l~~l~~~~g~tii~vTHd~ 195 (356)
T PRK11650 174 RLEIQRLHRRLKTTSLYVTHDQ 195 (356)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999875 88777777754
No 24
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.80 E-value=1.2e-19 Score=192.36 Aligned_cols=148 Identities=15% Similarity=0.146 Sum_probs=110.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|+.+| . +|+|.+++. ++... .... ...++.++|+||+. .+++.+|
T Consensus 29 ~~Gei~gIiG~sGaGKSTLlr~I~gl~~p-~--~G~I~i~G~--~i~~~~~~~l----~~~r~~Ig~v~Q~~-~l~~~~t 98 (343)
T TIGR02314 29 PAGQIYGVIGASGAGKSTLIRCVNLLERP-T--SGSVIVDGQ--DLTTLSNSEL----TKARRQIGMIFQHF-NLLSSRT 98 (343)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--ceEEEECCE--ECCcCCHHHH----HHHhcCEEEEECCc-cccccCc
Confidence 47899999999999999999999999986 2 456666652 22110 0000 01135789999984 5677799
Q ss_pred HHHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.++....+ .. ... ..+...+++++.+||||| .+|++|++|||++ +|+..+..
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~ 178 (343)
T TIGR02314 99 VFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 9999998764321 11 111 123456788889999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.++|+.+.++ |.+||++||..
T Consensus 179 i~~lL~~l~~~~g~tiiliTH~~ 201 (343)
T TIGR02314 179 ILELLKEINRRLGLTILLITHEM 201 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999875 88887777764
No 25
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.80 E-value=1.6e-19 Score=177.49 Aligned_cols=144 Identities=18% Similarity=0.208 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.++| ..|.|.+++. ++.. .. .++.++|++|++...++..|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~--~~-------~~~~i~~~~q~~~~~~~~~tv 89 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILAGLIKE---SSGSILLNGK--PIKA--KE-------RRKSIGYVMQDVDYQLFTDSV 89 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--Ehhh--HH-------hhcceEEEecChhhhhhhccH
Confidence 47899999999999999999999999875 2456766652 2211 01 124689999975334557899
Q ss_pred HHHHHHHHhhhhH--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+|+.++...... .... ..+...+++.+.+||+|| .+|++|+||||++ +|+..+..+.+++
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (205)
T cd03226 90 REELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELI 169 (205)
T ss_pred HHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHH
Confidence 9999875432211 1111 123445677788999997 7999999999999 9999999999999
Q ss_pred HHHHhCCcEEEEecCCC
Q 007851 315 SRLLSTGTVLVATSNRA 331 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~~ 331 (587)
..+.++|.+||++||..
T Consensus 170 ~~~~~~~~tii~~sH~~ 186 (205)
T cd03226 170 RELAAQGKAVIVITHDY 186 (205)
T ss_pred HHHHHCCCEEEEEeCCH
Confidence 99987788777777764
No 26
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.80 E-value=1.1e-19 Score=193.54 Aligned_cols=144 Identities=15% Similarity=0.131 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+.++ ..|.|.+++. ++.. .....+.++++||+ ..+++++||
T Consensus 30 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~--~i~~--------~~~~~r~ig~vfQ~-~~lfp~~tv 95 (351)
T PRK11432 30 KQGTMVTLLGPSGCGKTTVLRLVAGLEKP---TEGQIFIDGE--DVTH--------RSIQQRDICMVFQS-YALFPHMSL 95 (351)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHCCCCC---CceEEEECCE--ECCC--------CCHHHCCEEEEeCC-cccCCCCCH
Confidence 47899999999999999999999999986 3456777652 2210 01123578999998 467888999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. ... ..+..++++.+.+||||| .+|+|||||||++ +|+..+..+
T Consensus 96 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l 175 (351)
T PRK11432 96 GENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSM 175 (351)
T ss_pred HHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 999999865321 11 111 123456788899999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|..+.++ |+++|++||..
T Consensus 176 ~~~l~~l~~~~g~tii~vTHd~ 197 (351)
T PRK11432 176 REKIRELQQQFNITSLYVTHDQ 197 (351)
T ss_pred HHHHHHHHHhcCCEEEEEcCCH
Confidence 9999999875 78777777764
No 27
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.80 E-value=1.2e-19 Score=194.71 Aligned_cols=144 Identities=19% Similarity=0.165 Sum_probs=111.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|..++ ..|+|.+++. ++.. ....++.++|+||+ ..+++.+||
T Consensus 38 ~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p---~~G~I~~~g~--~i~~--------~~~~~r~ig~vfQ~-~~lfp~ltv 103 (375)
T PRK09452 38 NNGEFLTLLGPSGCGKTTVLRLIAGFETP---DSGRIMLDGQ--DITH--------VPAENRHVNTVFQS-YALFPHMTV 103 (375)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCE--ECCC--------CCHHHCCEEEEecC-cccCCCCCH
Confidence 46899999999999999999999999985 3467777663 2210 01123578999998 468889999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. ... ..+..++++.+.+||||| .+|+||+||||++ +|...+..|
T Consensus 104 ~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l 183 (375)
T PRK09452 104 FENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQM 183 (375)
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 999998765321 11 111 124567788899999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+|+++.++ |+++|++||..
T Consensus 184 ~~~L~~l~~~~g~tiI~vTHd~ 205 (375)
T PRK09452 184 QNELKALQRKLGITFVFVTHDQ 205 (375)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999875 88777777764
No 28
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.80 E-value=9.8e-20 Score=193.93 Aligned_cols=144 Identities=17% Similarity=0.140 Sum_probs=110.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+.++ ..|.|.+++. ++.. .....+.++|+||+ ..+++++||
T Consensus 28 ~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~~~~--------~~~~~r~ig~v~Q~-~~lfp~~tv 93 (353)
T TIGR03265 28 KKGEFVCLLGPSGCGKTTLLRIIAGLERQ---TAGTIYQGGR--DITR--------LPPQKRDYGIVFQS-YALFPNLTV 93 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCC---CceEEEECCE--ECCC--------CCHHHCCEEEEeCC-cccCCCCcH
Confidence 46899999999999999999999999985 2456666652 2110 01123568999998 467788999
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ . .... ..+..++++.+.+||||| .+|++||||||++ +|...+..+
T Consensus 94 ~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l 173 (353)
T TIGR03265 94 ADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHL 173 (353)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999998865321 1 1111 123456788889999997 7999999999998 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
...|+++.++ |.++|++||..
T Consensus 174 ~~~L~~l~~~~~~tvi~vTHd~ 195 (353)
T TIGR03265 174 RTEIRQLQRRLGVTTIMVTHDQ 195 (353)
T ss_pred HHHHHHHHHhcCCEEEEEcCCH
Confidence 9999999875 88777777764
No 29
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.80 E-value=3.3e-19 Score=176.51 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=108.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ .+|.|.|++. ++...-.. .....++.+++++|++ .+++.+||
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~~~~~~---~~~~~~~~i~~~~q~~-~~~~~~tv 97 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIEKP---TRGKIRFNGQ--DLTRLRGR---EIPFLRRHIGMVFQDH-RLLSDRTV 97 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ehhhcChh---HHHHHHHhceEEecCc-cccccccH
Confidence 47899999999999999999999999875 2467777652 22110000 0001124689999973 56667899
Q ss_pred HHHHHHHHhhhh------HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ------EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~------~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ ..... ..+...+++.+.+||||| .+|+||+||||++ +|+..+..+
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 177 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDI 177 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHH
Confidence 999987643211 01111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++.++.+.|.+||++||..
T Consensus 178 ~~~l~~~~~~~~tii~vsH~~ 198 (216)
T TIGR00960 178 MRLFEEFNRRGTTVLVATHDI 198 (216)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 999999987787777777763
No 30
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.79 E-value=3.9e-19 Score=176.05 Aligned_cols=145 Identities=17% Similarity=0.114 Sum_probs=107.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|.+++ . +|+|.+++. ++...... .++.+++++|++ .+++.+||
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~~-------~~~~i~~~~q~~-~~~~~~tv 95 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGLLEP-D--AGFATVDGF--DVVKEPAE-------ARRRLGFVSDST-GLYDRLTA 95 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC-C--CceEEECCE--EcccCHHH-------HHhhEEEecCCc-ccCcCCCH
Confidence 47899999999999999999999999875 2 456666552 22111111 124689999974 56667899
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||+|+ .+|++|+||||++ +|+.....+
T Consensus 96 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l 175 (218)
T cd03266 96 RENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRAL 175 (218)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHH
Confidence 999987543221 0 1111 123456777888999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|.++.++|.+||++||..
T Consensus 176 ~~~l~~~~~~~~tii~~tH~~ 196 (218)
T cd03266 176 REFIRQLRALGKCILFSTHIM 196 (218)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 999999987788777777764
No 31
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.79 E-value=2.9e-19 Score=173.53 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=106.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ ..|.|.+++. ++...... ....++.+++++|+....++..||
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~--~~~~~~~~----~~~~~~~i~~~~q~~~~~~~~~tv 86 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLLRP---QSGAVLIDGE--PLDYSRKG----LLERRQRVGLVFQDPDDQLFAADV 86 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceeEEECCE--Eccccccc----hHHHHhhEEEEecChhhccccccH
Confidence 47899999999999999999999999875 2456766652 22100000 001124589999975334456799
Q ss_pred HHHHHHHHhhhh---H---HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---E---VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~---~---~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||+|+ .+|+||+||||++ +|+.....+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 166 (190)
T TIGR01166 87 DQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166 (190)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987543211 0 0111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|..+.++|.+||++||..
T Consensus 167 ~~~l~~~~~~~~tili~sH~~ 187 (190)
T TIGR01166 167 LAILRRLRAEGMTVVISTHDV 187 (190)
T ss_pred HHHHHHHHHcCCEEEEEeecc
Confidence 999999987788777777764
No 32
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.79 E-value=2.2e-19 Score=190.34 Aligned_cols=145 Identities=19% Similarity=0.215 Sum_probs=109.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.++| . +|.|.+++. ++..... ..++.+|+++|+ ..+++.+||
T Consensus 65 ~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p-~--~G~i~i~G~--~~~~~~~-------~~~~~ig~v~q~-~~~~~~~tv 131 (340)
T PRK13536 65 ASGECFGLLGPNGAGKSTIARMILGMTSP-D--AGKITVLGV--PVPARAR-------LARARIGVVPQF-DNLDLEFTV 131 (340)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC-C--ceEEEECCE--ECCcchH-------HHhccEEEEeCC-ccCCCCCcH
Confidence 57899999999999999999999999986 2 456666552 2211101 123568999997 456678999
Q ss_pred HHHHHHHHhhhhH--H---H-Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--V---Q-MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~--~---~-~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+....++. . . .. ..+...+++.+.+||+|+ .+|++|+||||++ +|+..+..+
T Consensus 132 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l 211 (340)
T PRK13536 132 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 211 (340)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 9999865433211 0 0 11 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|.++.+.|.+||++||..
T Consensus 212 ~~~l~~l~~~g~tilisSH~l 232 (340)
T PRK13536 212 WERLRSLLARGKTILLTTHFM 232 (340)
T ss_pred HHHHHHHHhCCCEEEEECCCH
Confidence 999999988888888888875
No 33
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.79 E-value=1.6e-19 Score=192.78 Aligned_cols=146 Identities=16% Similarity=0.142 Sum_probs=109.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+.++ ....|.|.+++. ++.. .....+.++++||++ .+++.+||
T Consensus 29 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p-~~~~G~i~~~g~--~~~~--------~~~~~r~ig~vfQ~~-~l~p~~tv 96 (362)
T TIGR03258 29 EAGELLALIGKSGCGKTTLLRAIAGFVKA-AGLTGRIAIADR--DLTH--------APPHKRGLALLFQNY-ALFPHLKV 96 (362)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCEEEEECCE--ECCC--------CCHHHCCEEEEECCc-ccCCCCcH
Confidence 46899999999999999999999999985 230156766652 1110 011135689999984 57788999
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. .... .|..++++.+.+||||| .+|+||+||||++ +|+..+..|
T Consensus 97 ~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l 176 (362)
T TIGR03258 97 EDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANM 176 (362)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHH
Confidence 999998765322 11 1111 23446788889999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC--CcEEEEecCCC
Q 007851 311 SGIVSRLLST--GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~--G~vvV~TSn~~ 331 (587)
.++|.++.++ |+++|++||..
T Consensus 177 ~~~l~~l~~~~~g~til~vTHd~ 199 (362)
T TIGR03258 177 REEIAALHEELPELTILCVTHDQ 199 (362)
T ss_pred HHHHHHHHHhCCCCEEEEEeCCH
Confidence 9999999876 77777777764
No 34
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.79 E-value=7.6e-19 Score=172.88 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=108.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|..++ .+|.|.+++. ++... .. ..+.+++++|++ .+++.+||
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~~~-~~-------~~~~i~~~~q~~-~~~~~~tv 89 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLIKP---DSGEITFDGK--SYQKN-IE-------ALRRIGALIEAP-GFYPNLTA 89 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCC--cccch-HH-------HHhhEEEecCCC-ccCccCcH
Confidence 47899999999999999999999999875 2466777653 22111 11 124589999974 46677999
Q ss_pred HHHHHHHHhhhh--HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+|+.+.....+ ..... ..+....++.+.+||+|+ .+|++|+||||++ +|+.....+.+++
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 169 (208)
T cd03268 90 RENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELI 169 (208)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHH
Confidence 999987643221 11111 123456677888999997 7999999999999 9999999999999
Q ss_pred HHHHhCCcEEEEecCCC
Q 007851 315 SRLLSTGTVLVATSNRA 331 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~~ 331 (587)
.++.++|.++|++||..
T Consensus 170 ~~~~~~~~tii~~tH~~ 186 (208)
T cd03268 170 LSLRDQGITVLISSHLL 186 (208)
T ss_pred HHHHHCCCEEEEEcCCH
Confidence 99987788877777764
No 35
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.79 E-value=6.7e-19 Score=174.38 Aligned_cols=149 Identities=16% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHH-HHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHM-HRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l-~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|.+++. ++...- .... ....+.+++++|+ ..+++.+|
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~--~~~~~~~~~~~---~~~~~~i~~~~q~-~~~~~~~t 98 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDRP---TSGEVRVDGT--DISKLSEKELA---AFRRRHIGFVFQS-FNLLPDLT 98 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcCC---CceeEEECCE--ehhhcchhHHH---HHHhhcEEEEeec-cccCCCCc
Confidence 47899999999999999999999999975 2456777652 221100 0000 0012468999997 34666789
Q ss_pred HHHHHHHHHhhhh--H----HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--E----VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~----~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.+.....+ . ..... .+....++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHH
Confidence 9999987643321 0 11111 22345677788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHh-CCcEEEEecCCC
Q 007851 310 LSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+.+++.++.+ .|.+||++||..
T Consensus 179 l~~~l~~~~~~~~~tii~~sH~~ 201 (218)
T cd03255 179 VMELLRELNKEAGTTIVVVTHDP 201 (218)
T ss_pred HHHHHHHHHHhcCCeEEEEECCH
Confidence 9999999987 588777777764
No 36
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.78 E-value=4.2e-19 Score=189.53 Aligned_cols=149 Identities=13% Similarity=0.104 Sum_probs=111.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|+++| . +|.|.+++- ++... ...++ ...++.++|+||+ ..+++++|
T Consensus 17 ~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p-~--~G~I~i~G~--~i~~~~~~~~~---~~rr~~i~~v~Q~-~~l~~~~T 87 (363)
T TIGR01186 17 AKGEIFVIMGLSGSGKSTTVRMLNRLIEP-T--AGQIFIDGE--NIMKQSPVELR---EVRRKKIGMVFQQ-FALFPHMT 87 (363)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCCC-C--ceEEEECCE--ECCcCCHHHHH---HHHhCcEEEEECC-CcCCCCCC
Confidence 47899999999999999999999999986 2 456666652 22110 00110 0013578999997 56778899
Q ss_pred HHHHHHHHHhhhh--H----HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--E----VQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~----~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.++....+ . ... ...|...+++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~ 167 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDS 167 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 9999998765422 1 111 1124556788899999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++..+.+. |.+||++||..
T Consensus 168 l~~~l~~l~~~~~~Tii~vTHd~ 190 (363)
T TIGR01186 168 MQDELKKLQATLQKTIVFITHDL 190 (363)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999765 78887777765
No 37
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.78 E-value=1.4e-18 Score=174.29 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=106.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|.||||||||||+++|+|.+++ ..|.|.+++. ++... ..... ....+.+++++|+. .+++.+|
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~i~~~~~~~~~---~~~~~~i~~v~q~~-~~~~~~t 103 (233)
T PRK11629 33 GEGEMMAIVGSSGSGKSTLLHLLGGLDTP---TSGDVIFNGQ--PMSKLSSAAKA---ELRNQKLGFIYQFH-HLLPDFT 103 (233)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--EcCcCCHHHHH---HHHhccEEEEecCc-ccCCCCC
Confidence 47899999999999999999999999875 2466777652 22110 00000 00114689999973 5666789
Q ss_pred HHHHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|+.+.....+ . .... ..+....++.+.+||||| .+|+||+||||++ +|+.....
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADS 183 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Confidence 9999987543211 0 0111 123345667778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHh-CCcEEEEecCCC
Q 007851 310 LSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+.++|.++.+ .|.+||++||..
T Consensus 184 l~~~l~~~~~~~g~tvii~sH~~ 206 (233)
T PRK11629 184 IFQLLGELNRLQGTAFLVVTHDL 206 (233)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999976 588777777753
No 38
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.78 E-value=6.9e-19 Score=173.41 Aligned_cols=146 Identities=16% Similarity=0.160 Sum_probs=106.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|.|.+++. ++... ... .++.++|++|+....++.+|
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~~-------~~~~i~~~~q~~~~~~~~~t 92 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLLGP-T--SGEVLVDGK--DLTKLSLKE-------LRRKVGLVFQNPDDQFFGPT 92 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC-C--CceEEECCE--EcccCCHHH-------HHhhceEEecChhhhcCCCc
Confidence 47899999999999999999999999875 2 356666652 11110 001 12457999997433466789
Q ss_pred HHHHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|+.+.....+ . .... ..+....++.+.+||||+ .+|++|+||||++ +|+..+..
T Consensus 93 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 172 (211)
T cd03225 93 VEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172 (211)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 9999987543211 0 0111 123445677788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|.++.++|.+||++||..
T Consensus 173 ~~~~l~~~~~~~~tvi~~sH~~ 194 (211)
T cd03225 173 LLELLKKLKAEGKTIIIVTHDL 194 (211)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999987788777777764
No 39
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=2.2e-18 Score=169.93 Aligned_cols=142 Identities=17% Similarity=0.216 Sum_probs=107.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ ..+.|.+++. ++.. . .++.+++++|+. .+++.+|+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~---~-------~~~~i~~~~q~~-~~~~~~tv 87 (210)
T cd03269 24 EKGEIFGLLGPNGAGKTTTIRMILGIILP---DSGEVLFDGK--PLDI---A-------ARNRIGYLPEER-GLYPKMKV 87 (210)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCC--chhH---H-------HHccEEEeccCC-cCCcCCcH
Confidence 47899999999999999999999999875 2467777662 2221 1 124689999974 45667899
Q ss_pred HHHHHHHHhhhh---H---HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---E---VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~---~---~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . ..... .+....++.+.+||+|| .+|++|+||||++ +|+..+..+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~ 167 (210)
T cd03269 88 IDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELL 167 (210)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999987543221 0 11111 23345666778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++..+.++|.+||++||..
T Consensus 168 ~~~l~~~~~~~~tii~~sH~~ 188 (210)
T cd03269 168 KDVIRELARAGKTVILSTHQM 188 (210)
T ss_pred HHHHHHHHHCCCEEEEECCCH
Confidence 999999987788888888864
No 40
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.78 E-value=9e-19 Score=173.97 Aligned_cols=145 Identities=13% Similarity=0.101 Sum_probs=106.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.+++. ++...... ..+.+++++|+. .+++.+||
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~--~G~i~~~g~--~~~~~~~~-------~~~~i~~~~q~~-~~~~~~tv 90 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLTTLLKP-T--SGRATVAGH--DVVREPRE-------VRRRIGIVFQDL-SVDDELTG 90 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--ceEEEECCE--ecCcChHH-------HhhcEEEecCCc-cccccCcH
Confidence 47899999999999999999999999875 2 456776652 11110001 124589999974 45667899
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. ... ..+....++.+.+||||| .+|++|++|||+. +|+..+..+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 999987643321 10 111 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|..+.++ |.+||++||..
T Consensus 171 ~~~l~~~~~~~~~tvi~~tH~~ 192 (220)
T cd03265 171 WEYIEKLKEEFGMTILLTTHYM 192 (220)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999876 77777777754
No 41
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.78 E-value=1.2e-18 Score=171.85 Aligned_cols=149 Identities=16% Similarity=0.166 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ ..+.|.+++. ++...-.. .....++.+++++|++ .+++.+|+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~i~~~~~~---~~~~~~~~i~~v~q~~-~~~~~~t~ 95 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEELP---TSGTIRVNGQ--DVSDLRGR---AIPYLRRKIGVVFQDF-RLLPDRNV 95 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--EcccCCHH---HHHHHHHheEEEecCc-hhccCCcH
Confidence 47899999999999999999999999875 2456777652 22110000 0001124689999974 56667899
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||+|+ .+|+||+||||++ +|+.....+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 175 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEI 175 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 999987643211 0 0111 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++.++.++|.+||++||..
T Consensus 176 ~~~l~~~~~~~~tiiivtH~~ 196 (214)
T cd03292 176 MNLLKKINKAGTTVVVATHAK 196 (214)
T ss_pred HHHHHHHHHcCCEEEEEeCCH
Confidence 999999977788877777763
No 42
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.77 E-value=1.1e-18 Score=182.07 Aligned_cols=145 Identities=18% Similarity=0.169 Sum_probs=107.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.++| . +|.|.+++. ++..... ..++.+++++|+. .+++.+||
T Consensus 28 ~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~~-------~~~~~i~~v~q~~-~~~~~~tv 94 (303)
T TIGR01288 28 ARGECFGLLGPNGAGKSTIARMLLGMISP-D--RGKITVLGE--PVPSRAR-------LARVAIGVVPQFD-NLDPEFTV 94 (303)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--ceEEEECCE--ECcccHH-------HHhhcEEEEeccc-cCCcCCcH
Confidence 57899999999999999999999999975 2 456666542 2211000 1124689999973 46667999
Q ss_pred HHHHHHHHhhhh--HH----HH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. .. ...+...+++.+.+||||| .+|++|+||||++ +|+..+..+
T Consensus 95 ~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 174 (303)
T TIGR01288 95 RENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLI 174 (303)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999986433211 10 01 1123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++.++.++|.+||++||..
T Consensus 175 ~~~l~~~~~~g~til~~sH~~ 195 (303)
T TIGR01288 175 WERLRSLLARGKTILLTTHFM 195 (303)
T ss_pred HHHHHHHHhCCCEEEEECCCH
Confidence 999999988888888888864
No 43
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=9.7e-19 Score=172.77 Aligned_cols=144 Identities=19% Similarity=0.187 Sum_probs=106.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| ..|.|.+++. ++.. .. ...+.+++++|++ ..++.+|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~--~~~~-~~-------~~~~~i~~v~q~~-~~~~~~tv 89 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLERP---DSGEILIDGR--DVTG-VP-------PERRNIGMVFQDY-ALFPHLTV 89 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCE--EcCc-Cc-------hhhccEEEEcCch-hhccCCcH
Confidence 47899999999999999999999999875 2456776652 2211 00 0124689999974 46667899
Q ss_pred HHHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||||| .+|++|+||||++ +|+..+..+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987543211 0 0111 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+++.++.++ |.+||++||..
T Consensus 170 ~~~l~~~~~~~~~tii~~sH~~ 191 (213)
T cd03259 170 REELKELQRELGITTIYVTHDQ 191 (213)
T ss_pred HHHHHHHHHHcCCEEEEEecCH
Confidence 9999999764 88777777764
No 44
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.77 E-value=1.2e-18 Score=173.05 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=110.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
.+|+.++|+|++|||||||.++++|+.++. .|.|.|++-....+.+ .....+.+.+|||++. .+.|..|
T Consensus 31 ~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~---~G~I~~~G~~~~~~~~-------~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 31 ERGETLGIVGESGSGKSTLARLLAGLEKPS---SGSILLDGKPLAPKKR-------AKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhcccCCC---CceEEECCcccCcccc-------chhhccceeEEecCCccccCcchh
Confidence 479999999999999999999999999863 3566666621111110 0123467899999974 5777789
Q ss_pred HHHHHHHHHhhhhH----HHHhccH------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 253 VMEWVAAEEKYKQE----VQMKNIL------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 253 V~eni~~~~~~~~~----~~~~~~L------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
|.+-|..++...+. ....+.+ ..++++++.+||||| .+|++|++|||++ ||+..++.+
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 99999887765331 1111222 457899999999997 6999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCC
Q 007851 311 SGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
.++|..+.++ |.++++.||.
T Consensus 181 lnlL~~l~~~~~lt~l~IsHd 201 (252)
T COG1124 181 LNLLLELKKERGLTYLFISHD 201 (252)
T ss_pred HHHHHHHHHhcCceEEEEeCc
Confidence 9999999875 6666655554
No 45
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.77 E-value=9.2e-19 Score=166.76 Aligned_cols=146 Identities=18% Similarity=0.186 Sum_probs=109.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
+.++.+.|+||+|+|||||+++|+|...| .+ +.|..++- +.. ...+..+-++++||+ .++|.++||
T Consensus 23 ~~ge~vAi~GpSGaGKSTLLnLIAGF~~P-~~--G~i~i~g~--d~t--------~~~P~~RPVSmlFQE-nNLFaHLtV 88 (231)
T COG3840 23 PAGEIVAILGPSGAGKSTLLNLIAGFETP-AS--GEILINGV--DHT--------ASPPAERPVSMLFQE-NNLFAHLTV 88 (231)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhccCC-CC--ceEEEcCe--ecC--------cCCcccCChhhhhhc-cccchhhhh
Confidence 57899999999999999999999999876 34 44544541 211 012334568999997 678889999
Q ss_pred HHHHHHHHh----hhh--HHH-----HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEK----YKQ--EVQ-----MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~----~~~--~~~-----~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+||.++.. ... ... ....+....++++.+||||| .+-.||+||||++ +|++-+..+
T Consensus 89 ~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eM 168 (231)
T COG3840 89 AQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEM 168 (231)
T ss_pred hhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHH
Confidence 999988642 111 111 22356778899999999997 5667999999998 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCCccc
Q 007851 311 SGIVSRLLST-GTVLVATSNRAPWD 334 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~Ped 334 (587)
..|+..+.++ +.|+++.||. |+|
T Consensus 169 l~Lv~~l~~E~~~TllmVTH~-~~D 192 (231)
T COG3840 169 LALVSQLCDERKMTLLMVTHH-PED 192 (231)
T ss_pred HHHHHHHHHhhCCEEEEEeCC-HHH
Confidence 9999999875 6666655554 444
No 46
>PRK10908 cell division protein FtsE; Provisional
Probab=99.77 E-value=4e-18 Score=169.58 Aligned_cols=149 Identities=16% Similarity=0.164 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ ..++|.+++. ++...... .....++.++|++|++ .+++.+|+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~i~~~~~~---~~~~~~~~i~~~~q~~-~~~~~~tv 96 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLICGIERP---SAGKIWFSGH--DITRLKNR---EVPFLRRQIGMIFQDH-HLLMDRTV 96 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--EcccCChh---HHHHHHhheEEEecCc-cccccccH
Confidence 47899999999999999999999999975 2456766652 22110000 0001124689999974 45677999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. ... ..+...+++.+.+||+|| .+|++|+||||+. +|+.....+
T Consensus 97 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (222)
T PRK10908 97 YDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGI 176 (222)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHH
Confidence 999987643211 10 011 123345667778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++..+.++|.+||++||..
T Consensus 177 ~~~l~~~~~~~~tiii~sH~~ 197 (222)
T PRK10908 177 LRLFEEFNRVGVTVLMATHDI 197 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 999999977788777777763
No 47
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.77 E-value=2.6e-18 Score=168.61 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ . .|.|.+++. ++.. +.... .....++.+++++|++ .+++..|+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~-~~~~~-~~~~~~~~i~~~~q~~-~~~~~~t~ 93 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEKF-D--SGQVYLNGK--ETPP-LNSKK-ASKFRREKLGYLFQNF-ALIENETV 93 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC-C--CeEEEECCE--Eccc-cchhh-HHHHHHhCeeEEecch-hhccCCcH
Confidence 46899999999999999999999999875 2 356666653 1110 00000 0001134689999874 45667999
Q ss_pred HHHHHHHHhhhh------HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ------EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~------~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ ..... ..+....++.+.+||+|+ .+|++|+||||++ +|+.....+
T Consensus 94 ~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 173 (206)
T TIGR03608 94 EENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEV 173 (206)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHH
Confidence 999987543211 01111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|..+.+.|.+||++||..
T Consensus 174 ~~~l~~~~~~~~tii~~sh~~ 194 (206)
T TIGR03608 174 LDLLLELNDEGKTIIIVTHDP 194 (206)
T ss_pred HHHHHHHHhcCCEEEEEeCCH
Confidence 999999987788777777764
No 48
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.77 E-value=1.1e-18 Score=187.35 Aligned_cols=144 Identities=15% Similarity=0.112 Sum_probs=109.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+.++ ..|.|.+++. ++.. ....++.+||+||++ .+++++||
T Consensus 43 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~i~g~--~i~~--------~~~~~r~ig~vfQ~~-~lfp~ltv 108 (377)
T PRK11607 43 YKGEIFALLGASGCGKSTLLRMLAGFEQP---TAGQIMLDGV--DLSH--------VPPYQRPINMMFQSY-ALFPHMTV 108 (377)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCE--ECCC--------CCHHHCCEEEEeCCC-ccCCCCCH
Confidence 46899999999999999999999999985 2456666652 2110 011235799999984 67889999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ .. ... ..+..++++.+.+||||| .+|+||+||||++ +|...+..|
T Consensus 109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 999998765321 11 111 123456788889999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
...+.++.++ |.++|++||..
T Consensus 189 ~~~l~~l~~~~g~tii~vTHd~ 210 (377)
T PRK11607 189 QLEVVDILERVGVTCVMVTHDQ 210 (377)
T ss_pred HHHHHHHHHhcCCEEEEEcCCH
Confidence 9999888764 88888777864
No 49
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.77 E-value=8.9e-19 Score=182.70 Aligned_cols=145 Identities=12% Similarity=0.128 Sum_probs=107.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++++|.+++ . .|+|.+++. ++...... ..+.+||++|+ ..+++.+|+
T Consensus 26 ~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~-~--~G~i~i~g~--~~~~~~~~-------~~~~ig~~~q~-~~l~~~~tv 92 (301)
T TIGR03522 26 QKGRIVGFLGPNGAGKSTTMKIITGYLPP-D--SGSVQVCGE--DVLQNPKE-------VQRNIGYLPEH-NPLYLDMYV 92 (301)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCC-C--ceEEEECCE--EcccChHH-------HHhceEEecCC-CCCCCCCcH
Confidence 47899999999999999999999999886 3 355666552 22111111 12468999997 356777999
Q ss_pred HHHHHHHHhhhh---H---HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---E---VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~---~---~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.+.....+ . .... ..+...+++.+..||+|+ .+|++|+||||++ +|+..+..+
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l 172 (301)
T TIGR03522 93 REYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEI 172 (301)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987554322 1 1111 123445677888999997 8999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCc
Q 007851 311 SGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
.+++..+.+ +.+||++||...
T Consensus 173 ~~~l~~~~~-~~tiii~sH~l~ 193 (301)
T TIGR03522 173 RNVIKNIGK-DKTIILSTHIMQ 193 (301)
T ss_pred HHHHHHhcC-CCEEEEEcCCHH
Confidence 999999864 688888888753
No 50
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=1.7e-18 Score=171.91 Aligned_cols=141 Identities=14% Similarity=0.118 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ .+|.|.+++. ++. . ..+.+++++|.+ .+++.+|+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~----~-------~~~~i~~v~q~~-~~~~~~tv 90 (220)
T cd03293 28 EEGEFVALVGPSGCGKSTLLRIIAGLERP---TSGEVLVDGE--PVT----G-------PGPDRGYVFQQD-ALLPWLTV 90 (220)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECc----c-------ccCcEEEEeccc-ccccCCCH
Confidence 47899999999999999999999999875 2456766552 111 0 124689999974 45566899
Q ss_pred HHHHHHHHhhhh---H---HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---E---VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~---~---~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||||+ .+|++|+||||++ +|+..+..+
T Consensus 91 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~ 170 (220)
T cd03293 91 LDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQL 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHH
Confidence 999987643221 0 1111 123445667778999997 7999999999999 999999999
Q ss_pred HHHHHHHHh-CCcEEEEecCCC
Q 007851 311 SGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.++|.++.+ .|.+||++||..
T Consensus 171 ~~~l~~~~~~~~~tiii~sH~~ 192 (220)
T cd03293 171 QEELLDIWRETGKTVLLVTHDI 192 (220)
T ss_pred HHHHHHHHHHcCCEEEEEecCH
Confidence 999999865 477777777764
No 51
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.77 E-value=2.7e-18 Score=169.60 Aligned_cols=142 Identities=15% Similarity=0.164 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~~~t 252 (587)
.+|+.++|+||||||||||+++++|.++| ..|.|.+++. ++. .. ++.+++++|++.. ..+.+|
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~--~~~----~~-------~~~i~~v~q~~~~~~~~~~t 86 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLLKP---TSGSIRVFGK--PLE----KE-------RKRIGYVPQRRSIDRDFPIS 86 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCCEEEECCc--cHH----HH-------HhheEEeccccccccCCCCc
Confidence 47899999999999999999999999875 2456777662 221 11 2357999997532 124589
Q ss_pred HHHHHHHHHhhh--------hH--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYK--------QE--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~--------~~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|.+|+.+..... .. .... ..+....++.+.+||||+ .+|++|+||||++ +|+.
T Consensus 87 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~ 166 (213)
T cd03235 87 VRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166 (213)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 999998753210 00 1111 123445667788999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.++|.++.++|.+||++||..
T Consensus 167 ~~~~l~~~l~~~~~~~~tvi~~sH~~ 192 (213)
T cd03235 167 TQEDIYELLRELRREGMTILVVTHDL 192 (213)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999987787777777763
No 52
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.77 E-value=2.7e-18 Score=170.40 Aligned_cols=149 Identities=15% Similarity=0.100 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ . .+.|.+++. ++... ...... ...+.+++++|+. .+++.+|
T Consensus 29 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~--~G~i~~~g~--~~~~~~~~~~~~---~~~~~i~~v~q~~-~~~~~~t 99 (221)
T TIGR02211 29 GKGEIVAIVGSSGSGKSTLLHLLGGLDNP-T--SGEVLFNGQ--SLSKLSSNERAK---LRNKKLGFIYQFH-HLLPDFT 99 (221)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--EhhhcCHhHHHH---HHHhcEEEEeccc-ccCCCCc
Confidence 47899999999999999999999999875 2 456666652 22110 000000 0114589999973 4566789
Q ss_pred HHHHHHHHHhhhh---H---HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ---E---VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~---~---~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|+.+...... . .... ..+....++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 100 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 179 (221)
T TIGR02211 100 ALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKI 179 (221)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHH
Confidence 9999987532211 1 0111 123445677778999997 7999999999998 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++..+.++ |.+||++||..
T Consensus 180 l~~~l~~~~~~~~~tii~~tH~~ 202 (221)
T TIGR02211 180 IFDLMLELNRELNTSFLVVTHDL 202 (221)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999764 77777777764
No 53
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.5e-18 Score=172.53 Aligned_cols=148 Identities=17% Similarity=0.141 Sum_probs=105.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| ..|.|.+++. ++... .... ...++.+++++|+. .+++.+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~--~~~~~~~~~~----~~~~~~i~~v~q~~-~~~~~~t 93 (235)
T cd03261 24 RRGEILAIIGPSGSGKSTLLRLIVGLLRP---DSGEVLIDGE--DISGLSEAEL----YRLRRRMGMLFQSG-ALFDSLT 93 (235)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--EccccChhhH----HHHhcceEEEccCc-ccCCCCc
Confidence 47899999999999999999999999985 2456666652 21110 0000 01124689999974 4666789
Q ss_pred HHHHHHHHHhhh---hHH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 253 VMEWVAAEEKYK---QEV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 253 V~eni~~~~~~~---~~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
|.+|+.+..... ... .... .+....++.+.+||||| .+|+||+||||++ +|+..+.
T Consensus 94 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~ 173 (235)
T cd03261 94 VFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASG 173 (235)
T ss_pred HHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 999998764321 111 0111 22344567778999997 7999999999999 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+.+++.++.++ |.+||++||..
T Consensus 174 ~l~~~l~~~~~~~~~tvi~vsH~~ 197 (235)
T cd03261 174 VIDDLIRSLKKELGLTSIMVTHDL 197 (235)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCH
Confidence 999999999874 77777777753
No 54
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.77 E-value=2.8e-18 Score=172.39 Aligned_cols=149 Identities=16% Similarity=0.103 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ .+|.|.+++. ++...-.. .....++.+++++|+. .+++.+||
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~~~~~~---~~~~~~~~i~~~~q~~-~~~~~~tv 95 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLVEP---TSGSVLIDGT--DINKLKGK---ALRQLRRQIGMIFQQF-NLIERLSV 95 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC---CCceEEECCE--eccccCHh---HHHHHHhccEEEcccC-cccccCcH
Confidence 47899999999999999999999999875 2456766652 22110000 0001124689999874 45667899
Q ss_pred HHHHHHHHhh--------h----h--HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 254 MEWVAAEEKY--------K----Q--EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~--------~----~--~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.+|+.+.... . . ..... ..+....++.+.+||+|| .+|+||+||||++ +
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 175 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASL 175 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccC
Confidence 9999764210 0 0 00111 123345566778999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|+.....+.++|..+.++ |.+||++||..
T Consensus 176 D~~~~~~l~~~l~~~~~~~~~tii~~tH~~ 205 (241)
T cd03256 176 DPASSRQVMDLLKRINREEGITVIVSLHQV 205 (241)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999999999764 77777777764
No 55
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.77 E-value=1.8e-18 Score=172.86 Aligned_cols=147 Identities=15% Similarity=0.125 Sum_probs=106.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . +|.|.+++. .+...-... ..+..+++++|+. .+++.+|+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~~~~-----~~~~~i~~~~q~~-~~~~~~tv 92 (232)
T cd03218 24 KQGEIVGLLGPNGAGKTTTFYMIVGLVKP-D--SGKILLDGQ--DITKLPMHK-----RARLGIGYLPQEA-SIFRKLTV 92 (232)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ecccCCHhH-----HHhccEEEecCCc-cccccCcH
Confidence 47899999999999999999999999975 2 356766652 111000000 0123589999974 56667899
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. .... .+....++.+.+||+|+ .+|++|+||||++ +|+..+..+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~ 172 (232)
T cd03218 93 EENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDI 172 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 999987543221 00 1111 23445667778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++++++.+.|.+||++||..
T Consensus 173 ~~~l~~~~~~~~tii~~sH~~ 193 (232)
T cd03218 173 QKIIKILKDRGIGVLITDHNV 193 (232)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 999999987788888887763
No 56
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.77 E-value=3.1e-18 Score=169.14 Aligned_cols=148 Identities=22% Similarity=0.231 Sum_probs=106.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|+|.+++. ++... .... ....+.+++++|++ .+++.+|
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~--~~~~~~~~~~----~~~~~~i~~~~q~~-~~~~~~t 95 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGALTP---SRGQVRIAGE--DVNRLRGRQL----PLLRRRIGVVFQDF-RLLPDRT 95 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCE--EcccCCHHHH----HHHHhheEEEecCh-hhccCCc
Confidence 47899999999999999999999999875 2456776652 22110 0000 01124689999974 4566789
Q ss_pred HHHHHHHHHhhhh---H---HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ---E---VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~---~---~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|+.+.....+ . ..... .+....++.+.+||||| .+|++|+||||++ +|+..+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 9999987643211 0 01111 23344566778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.+++.++.++|.+||++||..
T Consensus 176 l~~~l~~~~~~~~tii~~tH~~ 197 (214)
T TIGR02673 176 ILDLLKRLNKRGTTVIVATHDL 197 (214)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999987788777777764
No 57
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.77 E-value=2.7e-18 Score=167.92 Aligned_cols=150 Identities=18% Similarity=0.207 Sum_probs=108.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|..++ . .+.|.+++. ++... .. ...+.+++++|. ..+++.+|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~-~~------~~~~~i~~~~q~-~~~~~~~tv 90 (198)
T TIGR01189 24 NAGEALQVTGPNGIGKTTLLRILAGLLRP-D--SGEVRWNGT--ALAEQ-RD------EPHRNILYLGHL-PGLKPELSA 90 (198)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--ccEEEECCE--Ecccc-hH------HhhhheEEeccC-cccccCCcH
Confidence 47899999999999999999999999875 2 456766652 22110 00 112457888886 445667899
Q ss_pred HHHHHHHHhhhh--HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+|+.+...... ..... ..+....++.+.+||+|+ .+|++|+||||++ +|+.....+.+++
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (198)
T TIGR01189 91 LENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLL 170 (198)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHH
Confidence 999987543322 11111 123455677788999997 7999999999999 9999999999999
Q ss_pred HHHHhCCcEEEEecCCCcccccc
Q 007851 315 SRLLSTGTVLVATSNRAPWDLNQ 337 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~~PedLy~ 337 (587)
..+.++|.++|++||.. .++++
T Consensus 171 ~~~~~~~~tii~~sH~~-~~~~~ 192 (198)
T TIGR01189 171 RAHLARGGIVLLTTHQD-LGLVE 192 (198)
T ss_pred HHHHhCCCEEEEEEccc-ccccc
Confidence 99877788777777764 44444
No 58
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.77 E-value=1.4e-18 Score=186.16 Aligned_cols=144 Identities=17% Similarity=0.164 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.++| ..|.|.+++. ++.. . ....+.++|+||++ .+++.+||
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p---~~G~I~~~g~--~i~~----~----~~~~~~i~~v~Q~~-~l~~~~tv 92 (369)
T PRK11000 27 HEGEFVVFVGPSGCGKSTLLRMIAGLEDI---TSGDLFIGEK--RMND----V----PPAERGVGMVFQSY-ALYPHLSV 92 (369)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCE--ECCC----C----CHhHCCEEEEeCCc-ccCCCCCH
Confidence 46899999999999999999999999985 2456776652 1110 0 01124689999974 57778999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. ... ..+....++.+.+||||| .+|+||+||||++ +|+..+..+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l 172 (369)
T PRK11000 93 AENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (369)
T ss_pred HHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 999998754321 11 111 123456777888999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.++|++||..
T Consensus 173 ~~~L~~l~~~~g~tvI~vTHd~ 194 (369)
T PRK11000 173 RIEISRLHKRLGRTMIYVTHDQ 194 (369)
T ss_pred HHHHHHHHHHhCCEEEEEeCCH
Confidence 9999999775 77777777753
No 59
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.77 E-value=1.9e-18 Score=170.31 Aligned_cols=147 Identities=16% Similarity=0.151 Sum_probs=106.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|.|.+++. ++.. .... ...++.++|++|++ .+++.+|
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~~-----~~~~~~i~~~~q~~-~~~~~~t 92 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEEP-D--SGTIIIDGL--KLTDDKKNI-----NELRQKVGMVFQQF-NLFPHLT 92 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--ECCccchhH-----HHHHhcceEEeccc-ccCCCCc
Confidence 47899999999999999999999999975 2 356666552 1110 0000 01124689999974 4566789
Q ss_pred HHHHHHHHHh-hhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 253 VMEWVAAEEK-YKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 253 V~eni~~~~~-~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
+.+|+.+... ..+ . .... ..+....++.+.+||+|+ .+|++|+||||+. +|+....
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 9999987532 111 0 0111 123455677788999997 7999999999998 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+.+++.++.+.|.+||++||..
T Consensus 173 ~l~~~l~~~~~~~~tvi~~sh~~ 195 (213)
T cd03262 173 EVLDVMKDLAEEGMTMVVVTHEM 195 (213)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999987788777777764
No 60
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.76 E-value=3.5e-18 Score=169.52 Aligned_cols=146 Identities=14% Similarity=0.158 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|..++ . +|+|.+++. ++... .... .++.+++++|++ .+++.+|
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~~~~------~~~~i~~~~q~~-~~~~~~t 91 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLLPP-R--SGSIRFDGR--DITGLPPHER------ARAGIGYVPEGR-RIFPELT 91 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--EcCCCCHHHH------HhcCeEEecccc-ccCCCCc
Confidence 47899999999999999999999999985 2 456666652 11100 0000 124589999974 5667789
Q ss_pred HHHHHHHHHhhhh----HHHHhc------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 253 VMEWVAAEEKYKQ----EVQMKN------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 253 V~eni~~~~~~~~----~~~~~~------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+.+|+.+...... ...... .+....++.+.+||+|+ .+|++|+||||++ +|+..+..+
T Consensus 92 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 171 (222)
T cd03224 92 VEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI 171 (222)
T ss_pred HHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH
Confidence 9999987643321 000111 13344566677999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|.++.+.|.+||++||..
T Consensus 172 ~~~l~~~~~~~~tiii~sH~~ 192 (222)
T cd03224 172 FEAIRELRDEGVTILLVEQNA 192 (222)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 999999987788887787763
No 61
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.2e-18 Score=177.43 Aligned_cols=146 Identities=20% Similarity=0.171 Sum_probs=108.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|.++| . .|.|.+++. ++.. .... ..+.++|++|++...++..|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~~~~-------~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 29 PEGSKTALLGPNGAGKSTLLLHLNGIYLP-Q--RGRVKVMGR--EVNAENEKW-------VRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-C--ceEEEECCE--ECCCCCHHH-------HHhhEEEEecChhhhhccCc
Confidence 47899999999999999999999999985 2 456666652 1110 0001 12468999998544566789
Q ss_pred HHHHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.++....+ . .... ..+....++.+.+||||+ .+|++||||||++ +|+..+..
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 9999987643211 0 0111 123456677888999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.+++..+.++|.+||++||..
T Consensus 177 l~~~l~~~~~~g~tili~tH~~ 198 (274)
T PRK13647 177 LMEILDRLHNQGKTVIVATHDV 198 (274)
T ss_pred HHHHHHHHHHCCCEEEEEeCCH
Confidence 9999999987788887777764
No 62
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=4.2e-18 Score=167.50 Aligned_cols=145 Identities=15% Similarity=0.165 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|.+++ . .|.|.+++. ++...... ..+.+++++|+ ..+++.+|+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~--~G~v~~~g~--~~~~~~~~-------~~~~~~~~~~~-~~~~~~~tv 91 (204)
T PRK13538 25 NAGELVQIEGPNGAGKTSLLRILAGLARP-D--AGEVLWQGE--PIRRQRDE-------YHQDLLYLGHQ-PGIKTELTA 91 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--EcccchHH-------hhhheEEeCCc-cccCcCCcH
Confidence 47899999999999999999999999985 2 456777652 22110001 12357888876 345667899
Q ss_pred HHHHHHHHhhhh---HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 254 ~eni~~~~~~~~---~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
.+|+.+.....+ ..... ..+....++.+.+||+|+ .+|++|+||||+. +|+.....+.++
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 171 (204)
T PRK13538 92 LENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEAL 171 (204)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 999987654321 11111 123445677788999997 7999999999998 999999999999
Q ss_pred HHHHHhCCcEEEEecCCC
Q 007851 314 VSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~~G~vvV~TSn~~ 331 (587)
|.++.++|.+||++||..
T Consensus 172 l~~~~~~~~tiii~sh~~ 189 (204)
T PRK13538 172 LAQHAEQGGMVILTTHQD 189 (204)
T ss_pred HHHHHHCCCEEEEEecCh
Confidence 999987777777777754
No 63
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.76 E-value=2e-18 Score=170.44 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.+++ ..+.|.+++. ++.. .. .....+++++|+. .+++..|+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~v~~~g~--~~~~----~~----~~~~~i~~~~q~~-~~~~~~tv 89 (213)
T cd03301 24 ADGEFVVLLGPSGCGKTTTLRMIAGLEEP---TSGRIYIGGR--DVTD----LP----PKDRDIAMVFQNY-ALYPHMTV 89 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECCc----CC----cccceEEEEecCh-hhccCCCH
Confidence 47899999999999999999999999875 2456766652 2110 00 0124689999974 45667899
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. ... ..+....++.+.+||+|+ .+|++|+||||+. +|+..+..+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 169 (213)
T cd03301 90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 (213)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987643211 00 111 123445677778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+++.++.++ |.+||++||..
T Consensus 170 ~~~l~~~~~~~~~tvi~~sH~~ 191 (213)
T cd03301 170 RAELKRLQQRLGTTTIYVTHDQ 191 (213)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999864 78877777764
No 64
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.6e-18 Score=182.48 Aligned_cols=148 Identities=17% Similarity=0.195 Sum_probs=108.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++... .... ...++.+++++|+. .+++.+|
T Consensus 29 ~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p---~~G~I~~~g~--~i~~~~~~~~----~~~~~~ig~v~q~~-~l~~~~t 98 (343)
T PRK11153 29 PAGEIFGVIGASGAGKSTLIRCINLLERP---TSGRVLVDGQ--DLTALSEKEL----RKARRQIGMIFQHF-NLLSSRT 98 (343)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCE--ECCcCCHHHH----HHHhcCEEEEeCCC-ccCCCCc
Confidence 47899999999999999999999999985 2456666652 22110 0000 01124689999974 4667799
Q ss_pred HHHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.++....+ .. .... .+....++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~ 178 (343)
T PRK11153 99 VFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178 (343)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999988654321 11 1111 23345677788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.++|.++.++ |++||++||..
T Consensus 179 l~~~L~~l~~~~g~tiilvtH~~ 201 (343)
T PRK11153 179 ILELLKDINRELGLTIVLITHEM 201 (343)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999765 88887777764
No 65
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.76 E-value=2.1e-18 Score=183.84 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=108.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ ..|+|.|++. ++.. . ....+.++|+||+ ..+++.+||
T Consensus 26 ~~Ge~~~llGpsGsGKSTLLr~IaGl~~p---~~G~I~i~g~--~i~~----~----~~~~r~i~~v~Q~-~~l~p~~tv 91 (353)
T PRK10851 26 PSGQMVALLGPSGSGKTTLLRIIAGLEHQ---TSGHIRFHGT--DVSR----L----HARDRKVGFVFQH-YALFRHMTV 91 (353)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCE--ECCC----C----CHHHCCEEEEecC-cccCCCCcH
Confidence 46899999999999999999999999885 2456777652 2211 0 0112468999998 467778999
Q ss_pred HHHHHHHHhhh------hHH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYK------QEV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~------~~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.++.... ... ... ..+..+.++.+.+||||| .+|+|||||||++ +|+..
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~ 171 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 99999875421 111 111 123456788889999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.++|.++.++ |.++|++||..
T Consensus 172 r~~l~~~L~~l~~~~g~tii~vTHd~ 197 (353)
T PRK10851 172 RKELRRWLRQLHEELKFTSVFVTHDQ 197 (353)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999876 77766666654
No 66
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.76 E-value=4.3e-18 Score=166.90 Aligned_cols=145 Identities=17% Similarity=0.203 Sum_probs=105.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|..++ .+|+|.+++. .+.... ...++.+++++|+ ..+++..||
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~v~~~g~--~~~~~~-------~~~~~~i~~~~q~-~~~~~~~tv 91 (200)
T PRK13540 25 PAGGLLHLKGSNGAGKTTLLKLIAGLLNP---EKGEILFERQ--SIKKDL-------CTYQKQLCFVGHR-SGINPYLTL 91 (200)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeeEEECCC--ccccCH-------HHHHhheEEeccc-cccCcCCCH
Confidence 47899999999999999999999999875 2456777652 221100 0112468899886 345577999
Q ss_pred HHHHHHHHhhhh-HHHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ-EVQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVS 315 (587)
Q Consensus 254 ~eni~~~~~~~~-~~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~ 315 (587)
.+|+.+...... ...... .+....++.+.+||+|+ .+|++|+||||+. +|+.....+.++|.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~ 171 (200)
T PRK13540 92 RENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQ 171 (200)
T ss_pred HHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHH
Confidence 999987532111 111111 12334566677999997 7999999999999 99999999999999
Q ss_pred HHHhCCcEEEEecCCC
Q 007851 316 RLLSTGTVLVATSNRA 331 (587)
Q Consensus 316 ~L~~~G~vvV~TSn~~ 331 (587)
++.+.|.+||++||..
T Consensus 172 ~~~~~~~tiii~sh~~ 187 (200)
T PRK13540 172 EHRAKGGAVLLTSHQD 187 (200)
T ss_pred HHHHcCCEEEEEeCCc
Confidence 9877788777777753
No 67
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=1.1e-18 Score=180.07 Aligned_cols=146 Identities=14% Similarity=0.104 Sum_probs=109.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++++|.++| . .|.|.+++. ++.. .... .++.+++++|++...++..|
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~i~~~~~~~-------~~~~i~~v~q~~~~~~~~~t 98 (279)
T PRK13650 31 KQGEWLSIIGHNGSGKSTTVRLIDGLLEA-E--SGQIIIDGD--LLTEENVWD-------IRHKIGMVFQNPDNQFVGAT 98 (279)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CcEEEECCE--ECCcCcHHH-------HHhhceEEEcChHHhccccc
Confidence 47899999999999999999999999986 2 456766663 2211 0001 12468999997544667789
Q ss_pred HHHHHHHHHhhhh--H----HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--E----VQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~----~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.++....+ . ... ...+....++.+.+||+|| .+|+||+||||+. +|+..+..
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~ 178 (279)
T PRK13650 99 VEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLE 178 (279)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 9999987643211 1 001 1134556777888999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.++|..+.++ |.+||++||..
T Consensus 179 l~~~l~~l~~~~g~tilivtH~~ 201 (279)
T PRK13650 179 LIKTIKGIRDDYQMTVISITHDL 201 (279)
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999875 88887777764
No 68
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.4e-18 Score=179.94 Aligned_cols=155 Identities=12% Similarity=0.095 Sum_probs=108.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH------------HHHH---Hh-hhhhhcccce
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE------------HMHR---LW-KNQVAEKSLR 237 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~------------~l~~---~~-~~~~~~~~~i 237 (587)
.+|+.++|+||||||||||+++|+|.++| .. +.|.+++.-..... .+.. .. ......++.+
T Consensus 31 ~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p-~~--G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 107 (305)
T PRK13651 31 NQGEFIAIIGQTGSGKTTFIEHLNALLLP-DT--GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRV 107 (305)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCCCCC-CC--cEEEEeceecccccccccccccccccccccccccccchHHHHHhce
Confidence 47899999999999999999999999986 34 45554432110000 0000 00 0001123578
Q ss_pred eeeeccCCCCCCCCcHHHHHHHHHhhhh--H----HHHh-----ccHH-HHHhHhhhhhcccC-----------CCccEE
Q 007851 238 SSISGWITNLPFDSKVMEWVAAEEKYKQ--E----VQMK-----NILP-AVADKFLVDQHADQ-----------RGASIL 294 (587)
Q Consensus 238 g~v~q~~~~~~~~~tV~eni~~~~~~~~--~----~~~~-----~~L~-~la~~l~~~LSgGq-----------~~p~LL 294 (587)
||+||++...++..||.+|+.++....+ . .... ..+. ..+++.+.+||||| .+|+||
T Consensus 108 g~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lL 187 (305)
T PRK13651 108 GVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFL 187 (305)
T ss_pred EEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999986555667899999988654221 0 0111 1232 46777888999997 799999
Q ss_pred EEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 295 CFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 295 ~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+||||++ +|+..+..+.++|..+.+.|.+||++||..
T Consensus 188 lLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~ 225 (305)
T PRK13651 188 VFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225 (305)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCH
Confidence 9999999 999999999999999987788777777754
No 69
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.9e-18 Score=170.76 Aligned_cols=148 Identities=17% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ .+|.|.+++. ++... .... ....+.+++++|++ .+++.+|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~~~~~~~----~~~~~~i~~~~q~~-~~~~~~t 98 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLERP---TSGSVLVDGT--DLTLLSGKEL----RKARRRIGMIFQHF-NLLSSRT 98 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCE--EcccCCHHHH----HHHHhheEEEccCc-ccCCCCc
Confidence 57899999999999999999999999985 2456777653 22110 0000 01124689999874 4556799
Q ss_pred HHHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|+.+.....+ . .... ..+....++.+.+||+|| .+|++|+||||++ +|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 9999987543211 0 0111 123455667788999997 7999999999998 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++..+.++ |.+||++||..
T Consensus 179 l~~~l~~~~~~~~~tvii~sH~~ 201 (233)
T cd03258 179 ILALLRDINRELGLTIVLITHEM 201 (233)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999775 78777777753
No 70
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=4.8e-18 Score=170.97 Aligned_cols=144 Identities=20% Similarity=0.192 Sum_probs=105.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|.+++. ++.. .. ...+.+++++|++ .+++..||
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~~----~~----~~~~~i~~v~q~~-~~~~~~tv 91 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLERP---DSGTILFGGE--DATD----VP----VQERNVGFVFQHY-ALFRHMTV 91 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECCc----CC----ccccceEEEecCC-cccCCCCH
Confidence 47899999999999999999999999875 2456777652 2110 00 0124689999973 45667899
Q ss_pred HHHHHHHHhhhh------HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQ------EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~------~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+.....+ .. ... ..+....++.+.+||+|| .+|+||+||||++ +|+..
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 999987543211 00 011 123445677788999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.+++.++.++ |.+||++||..
T Consensus 172 ~~~l~~~l~~~~~~~~~tvii~sH~~ 197 (239)
T cd03296 172 RKELRRWLRRLHDELHVTTVFVTHDQ 197 (239)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999999875 77777777763
No 71
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.76 E-value=4.1e-18 Score=170.73 Aligned_cols=146 Identities=18% Similarity=0.166 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ . +|.|.+++. ++... .... .+..+++++|++ .+++.+|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~l~~~~t 91 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLISGFLRP-T--SGSVLFDGE--DITGLPPHEI------ARLGIGRTFQIP-RLFPELT 91 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC-C--CceEEECCE--ECCCCCHHHH------HhcCEEEEeccc-ccccCCC
Confidence 47899999999999999999999999975 2 456666652 11100 0000 123589999974 4667789
Q ss_pred HHHHHHHHHhhhh------------HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCC
Q 007851 253 VMEWVAAEEKYKQ------------EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 253 V~eni~~~~~~~~------------~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt 300 (587)
|.+|+.+...... .. .... .+....++.+.+||||+ .+|++|++|||+
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 171 (236)
T cd03219 92 VLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPA 171 (236)
T ss_pred HHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 9999987643210 00 0111 12334566778999997 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+ +|+..+..+.+++..+.+.|.+||++||..
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~ 203 (236)
T cd03219 172 AGLNPEETEELAELIRELRERGITVLLVEHDM 203 (236)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 9 999999999999999987788777777763
No 72
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=2.2e-18 Score=177.93 Aligned_cols=147 Identities=14% Similarity=0.070 Sum_probs=108.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .|+|.|++. ++... .. ....+.++|++|+....++..||
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p-~--~G~i~~~g~--~i~~~-~~-----~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 31 YEGEWVAIVGHNGSGKSTLAKLLNGLLLP-E--AGTITVGGM--VLSEE-TV-----WDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-C--CcEEEECCE--ECCcC-cH-----HHHhhheEEEEeCHHHhcccccH
Confidence 47899999999999999999999999986 2 456666653 22110 00 01124689999985446677899
Q ss_pred HHHHHHHHhhhh--HH----HH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. .. ...+....++.+.+||+|+ .+|+||+||||+. +|+..+..+
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987543211 10 01 1134556777888999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 180 ~~~l~~l~~~~~~tilivsH~~ 201 (279)
T PRK13635 180 LETVRQLKEQKGITVLSITHDL 201 (279)
T ss_pred HHHHHHHHHcCCCEEEEEecCH
Confidence 9999999876 88887777764
No 73
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=4.4e-18 Score=167.81 Aligned_cols=144 Identities=15% Similarity=0.111 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|..++ . .|+|.+++. ++.. .. ..++.+++++|+. .+++.+|+
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~-~--~G~i~~~g~--~~~~----~~----~~~~~i~~~~q~~-~~~~~~tv 87 (211)
T cd03298 22 AQGEITAIVGPSGSGKSTLLNLIAGFETP-Q--SGRVLINGV--DVTA----AP----PADRPVSMLFQEN-NLFAHLTV 87 (211)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--EcCc----CC----HhHccEEEEeccc-ccCCCCcH
Confidence 47899999999999999999999999975 2 456666652 2110 00 0124689999974 45667899
Q ss_pred HHHHHHHHhhh----h--HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYK----Q--EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~----~--~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+..... . ..... ..+....++.+.+||+|+ .+|++|+||||++ +|+..+..+
T Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l 167 (211)
T cd03298 88 EQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEM 167 (211)
T ss_pred HHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 99998653210 0 01111 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 168 ~~~l~~~~~~~~~tii~~sH~~ 189 (211)
T cd03298 168 LDLVLDLHAETKMTVLMVTHQP 189 (211)
T ss_pred HHHHHHHHHhcCCEEEEEecCH
Confidence 9999999764 77777777753
No 74
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.75 E-value=3.8e-18 Score=169.20 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=105.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ . .|.|.+++. ++..... ...+.+++++|++ .+++..|+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~-------~~~~~i~~v~q~~-~~~~~~tv 92 (220)
T cd03263 26 YKGEIFGLLGHNGAGKTTTLKMLTGELRP-T--SGTAYINGY--SIRTDRK-------AARQSLGYCPQFD-ALFDELTV 92 (220)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ecccchH-------HHhhhEEEecCcC-CccccCCH
Confidence 47899999999999999999999999875 3 356666552 2211000 1124589999973 45667899
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....+..+.+||+|| .+|++|+||||+. +|+.....+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l 172 (220)
T cd03263 93 REHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAI 172 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHH
Confidence 999987543221 0 1111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++..+.+ +.+||++||..
T Consensus 173 ~~~l~~~~~-~~tii~~sH~~ 192 (220)
T cd03263 173 WDLILEVRK-GRSIILTTHSM 192 (220)
T ss_pred HHHHHHHhc-CCEEEEEcCCH
Confidence 999999876 47777777764
No 75
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=1.6e-18 Score=166.74 Aligned_cols=141 Identities=17% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+++.|.+.||+|||||||+++++|..+| ..++|..++- . + .......|.|||+ ..++|+++
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P---~~G~i~l~~r--~----i-------~gPgaergvVFQ~-~~LlPWl~ 90 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFVTP---SRGSIQLNGR--R----I-------EGPGAERGVVFQN-EALLPWLN 90 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCcCc---ccceEEECCE--e----c-------cCCCccceeEecc-CccchhhH
Confidence 357899999999999999999999999986 2356655541 1 1 1123456999998 68899999
Q ss_pred HHHHHHHHHhhhhHHH--H---------hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQEVQ--M---------KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~~~~--~---------~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|++|++...+..+ . ...+....++++-+||||+ .+|++|+||||+. +|.-.+..
T Consensus 91 ~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~ 170 (259)
T COG4525 91 VIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170 (259)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHH
Confidence 9999999988765211 1 1223455677788999996 6999999999998 99999999
Q ss_pred HHHHHHHHHhC-Cc-EEEEecCC
Q 007851 310 LSGIVSRLLST-GT-VLVATSNR 330 (587)
Q Consensus 310 L~~Ll~~L~~~-G~-vvV~TSn~ 330 (587)
+..++-.+++. |. ++++||..
T Consensus 171 mQelLldlw~~tgk~~lliTH~i 193 (259)
T COG4525 171 MQELLLDLWQETGKQVLLITHDI 193 (259)
T ss_pred HHHHHHHHHHHhCCeEEEEeccH
Confidence 99999999875 66 55666553
No 76
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.75 E-value=5.4e-18 Score=166.45 Aligned_cols=145 Identities=18% Similarity=0.196 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|..++ . .+.|.+++. ++... . ...++.+++++|+ ..+++.+|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~----~---~~~~~~i~~~~q~-~~~~~~~tv 90 (201)
T cd03231 24 AAGEALQVTGPNGSGKTTLLRILAGLSPP-L--AGRVLLNGG--PLDFQ----R---DSIARGLLYLGHA-PGIKTTLSV 90 (201)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ecccc----c---HHhhhheEEeccc-cccCCCcCH
Confidence 47899999999999999999999999875 2 355665542 11110 0 0113468899886 355667999
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSR 316 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~ 316 (587)
.+|+.+.......... ...+....++.+.+||+|+ .+|++|+||||+. +|+.....+.++|.+
T Consensus 91 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 170 (201)
T cd03231 91 LENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAG 170 (201)
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999875322111111 1123445677788999996 7999999999999 999999999999999
Q ss_pred HHhCCcEEEEecCCC
Q 007851 317 LLSTGTVLVATSNRA 331 (587)
Q Consensus 317 L~~~G~vvV~TSn~~ 331 (587)
+.+.|.++|++||..
T Consensus 171 ~~~~g~tiii~sH~~ 185 (201)
T cd03231 171 HCARGGMVVLTTHQD 185 (201)
T ss_pred HHhCCCEEEEEecCc
Confidence 877787777777754
No 77
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.75 E-value=6e-18 Score=170.28 Aligned_cols=148 Identities=16% Similarity=0.080 Sum_probs=105.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|..++ .+|.|.+++. ++... .... ...++.+++++|++ .+++.+|
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~~~~~~~~----~~~~~~i~~v~q~~-~~~~~~t 95 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLVEP---SSGSILLEGT--DITKLRGKKL----RKLRRRIGMIFQHY-NLIERLT 95 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC---CccEEEECCE--EhhhCCHHHH----HHHHhheEEEcCCC-ccccccc
Confidence 47899999999999999999999999975 2456777652 22110 0000 01124689999974 4566789
Q ss_pred HHHHHHHHHhh-----------hhH---HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 253 VMEWVAAEEKY-----------KQE---VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 253 V~eni~~~~~~-----------~~~---~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
|.+|+.++... ... .... ..+....++.+.+||||+ .+|+||+||||++
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 175 (243)
T TIGR02315 96 VLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIAS 175 (243)
T ss_pred HHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99999764210 000 0111 123445566778999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+|+.....+.++|..+.++ |.+||++||..
T Consensus 176 LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~ 206 (243)
T TIGR02315 176 LDPKTSKQVMDYLKRINKEDGITVIINLHQV 206 (243)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999999999999764 77777777753
No 78
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.75 E-value=4.1e-18 Score=182.97 Aligned_cols=163 Identities=18% Similarity=0.207 Sum_probs=118.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+..+|+|.||+||||||+++||.+.| .+ +.|.+++.-..+.. .....+..||+|+|+ +.+.+.+||
T Consensus 28 ~~GeIHaLLGENGAGKSTLm~iL~G~~~P-~~--GeI~v~G~~v~~~s-------P~dA~~~GIGMVhQH-F~Lv~~lTV 96 (501)
T COG3845 28 KKGEIHALLGENGAGKSTLMKILFGLYQP-DS--GEIRVDGKEVRIKS-------PRDAIRLGIGMVHQH-FMLVPTLTV 96 (501)
T ss_pred cCCcEEEEeccCCCCHHHHHHHHhCcccC-Cc--ceEEECCEEeccCC-------HHHHHHcCCcEEeec-cccccccch
Confidence 57999999999999999999999999987 34 45555542122211 111224579999998 577888999
Q ss_pred HHHHHHHHhhh-----hHHHHhccHHHHH---------hHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 254 MEWVAAEEKYK-----QEVQMKNILPAVA---------DKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 254 ~eni~~~~~~~-----~~~~~~~~L~~la---------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
.|||.++.... ........+..+. ++.+.+||-|+ .++++|+|||||+ |-|..+
T Consensus 97 ~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~ 176 (501)
T COG3845 97 AENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176 (501)
T ss_pred hhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 99999875321 1111122223332 33445788885 7999999999998 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG 362 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~ 362 (587)
..|+.+++.|.+.|.+||+.||...| +..+.+++.|+.-+
T Consensus 177 ~~lf~~l~~l~~~G~tIi~ITHKL~E---------------v~~iaDrvTVLR~G 216 (501)
T COG3845 177 DELFEILRRLAAEGKTIIFITHKLKE---------------VMAIADRVTVLRRG 216 (501)
T ss_pred HHHHHHHHHHHHCCCEEEEEeccHHH---------------HHHhhCeeEEEeCC
Confidence 99999999999999999888887533 45566777776543
No 79
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.6e-18 Score=179.64 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.+++. ++...... ....+..+||+||++...++..||
T Consensus 31 ~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~~~----~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 31 EDGEFVGLIGHTGSGKSTLIQHLNGLLKP-T--SGKIIIDGV--DITDKKVK----LSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-C--ccEEEECCE--ECCCcCcc----HHHHhhceEEEecCchhccccccH
Confidence 47899999999999999999999999986 2 456666552 22110000 001124689999986445667899
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHH--HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILP--AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~--~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
.+|+.++....+ .. .... .+. .+.++.+.+||||| .+|+||+||||++ +|+..+.
T Consensus 102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~ 181 (287)
T PRK13637 102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRD 181 (287)
T ss_pred HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHH
Confidence 999987653221 10 1111 232 34667778999997 7999999999999 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+.++|..+.++ |.+||++||..
T Consensus 182 ~l~~~l~~l~~~~g~tvi~vtHd~ 205 (287)
T PRK13637 182 EILNKIKELHKEYNMTIILVSHSM 205 (287)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999875 88877777764
No 80
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.75 E-value=6.8e-18 Score=166.62 Aligned_cols=145 Identities=14% Similarity=0.119 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..|+.++|+|+||+||||||++|+|.+++ .+++|.|.+ .++... .|+. .+..+++|+|. ...|+.+|
T Consensus 27 ~~Geiv~llG~NGaGKTTlLkti~Gl~~~---~~G~I~~~G--~dit~~p~~~r------~r~Gi~~VPeg-R~iF~~LT 94 (237)
T COG0410 27 ERGEIVALLGRNGAGKTTLLKTIMGLVRP---RSGRIIFDG--EDITGLPPHER------ARLGIAYVPEG-RRIFPRLT 94 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeeEEECC--eecCCCCHHHH------HhCCeEeCccc-ccchhhCc
Confidence 57899999999999999999999999985 357888876 344321 1221 23578899987 57889999
Q ss_pred HHHHHHHHHhhhhH-------H-HH---hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQE-------V-QM---KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~~-------~-~~---~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.||+..+...... . .. -..|.+..++..++||||+ .+|++|+||||+. +-|.-...
T Consensus 95 VeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~ 174 (237)
T COG0410 95 VEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174 (237)
T ss_pred HHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHH
Confidence 99999876543221 0 01 1235566777788999996 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
+.+.+..|.++ |++|+.....
T Consensus 175 I~~~i~~l~~~~g~tIlLVEQn 196 (237)
T COG0410 175 IFEAIKELRKEGGMTILLVEQN 196 (237)
T ss_pred HHHHHHHHHHcCCcEEEEEecc
Confidence 99999999976 6676665443
No 81
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.8e-18 Score=175.98 Aligned_cols=151 Identities=19% Similarity=0.171 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| ..|.|.+++. ++...... ......+..+++++|++...++.+||
T Consensus 31 ~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~~~~~--~~~~~~~~~ig~v~q~~~~~~~~~tv 103 (287)
T PRK13641 31 EEGSFVALVGHTGSGKSTLMQHFNALLKP---SSGTITIAGY--HITPETGN--KNLKKLRKKVSLVFQFPEAQLFENTV 103 (287)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--ECcccccc--chHHHHHhceEEEEeChhhhhccchH
Confidence 47999999999999999999999999986 2456766653 22100000 00001124689999985334556899
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.++..... .. ... ..+. .+.++.+.+||+|| .+|+||+||||++ +|+..+..
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~ 183 (287)
T PRK13641 104 LKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKE 183 (287)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHH
Confidence 999987543211 00 011 1232 45677778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|.++.+.|.+||++||..
T Consensus 184 l~~~l~~l~~~g~tvlivsH~~ 205 (287)
T PRK13641 184 MMQLFKDYQKAGHTVILVTHNM 205 (287)
T ss_pred HHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999987788887777764
No 82
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.75 E-value=4.6e-18 Score=170.76 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=105.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|..+| .+|.|.+++. ++...... ..+.+++++|++ .+++.+|+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~--~i~~~~~~-------~~~~i~~~~q~~-~~~~~~t~ 91 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLYVA---QEGQISVAGH--DLRRAPRA-------ALARLGVVFQQP-TLDLDLSV 91 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC---CceEEEECCE--EcccCChh-------hhhhEEEeCCCC-CCcccCcH
Confidence 47899999999999999999999999875 3466777652 22110000 113589999974 45577999
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+...+++.+.+||+|+ .+|+|||||||++ +|+.....+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 999987543221 0 0111 123344567778999997 7999999999999 999999999
Q ss_pred HHHHHHHHh-CCcEEEEecCCC
Q 007851 311 SGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.++|..+.+ +|.+||++||..
T Consensus 172 ~~~l~~~~~~~~~tiii~sH~~ 193 (236)
T TIGR03864 172 VAHVRALCRDQGLSVLWATHLV 193 (236)
T ss_pred HHHHHHHHHhCCCEEEEEecCh
Confidence 999999975 577777777764
No 83
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.3e-18 Score=174.56 Aligned_cols=149 Identities=16% Similarity=0.145 Sum_probs=107.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|.+++. ++....... ....+.++|++|++...++..||
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~--~~~~~~~~~----~~~~~~i~~v~q~~~~~~~~~tv 96 (275)
T PRK13639 26 EKGEMVALLGPNGAGKSTLFLHFNGILKP---TSGEVLIKGE--PIKYDKKSL----LEVRKTVGIVFQNPDDQLFAPTV 96 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCE--ECccccchH----HHHHhheEEEeeChhhhhccccH
Confidence 47999999999999999999999999985 2456776653 211000000 01124689999985444556899
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ . .... ..+..+.++.+.+||+|+ .+|+||+||||++ +|+..+..+
T Consensus 97 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 176 (275)
T PRK13639 97 EEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQI 176 (275)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH
Confidence 999987542211 0 0111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++.++.++|.+||++||..
T Consensus 177 ~~~l~~l~~~~~til~vtH~~ 197 (275)
T PRK13639 177 MKLLYDLNKEGITIIISTHDV 197 (275)
T ss_pred HHHHHHHHHCCCEEEEEecCH
Confidence 999999987788777777764
No 84
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=6.5e-18 Score=175.16 Aligned_cols=151 Identities=15% Similarity=0.163 Sum_probs=108.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ .+|.|.+++. ++...... ......++.++++||++...++..||
T Consensus 30 ~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~i~~~~~~--~~~~~~~~~ig~v~q~~~~~l~~~tv 102 (288)
T PRK13643 30 KKGSYTALIGHTGSGKSTLLQHLNGLLQP---TEGKVTVGDI--VVSSTSKQ--KEIKPVRKKVGVVFQFPESQLFEETV 102 (288)
T ss_pred cCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCE--ECcccccc--ccHHHHHhhEEEEecCcchhcccchH
Confidence 47899999999999999999999999986 2456666653 11100000 00001134689999985445566799
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.++....+ .. .... .+ ..+.++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 103 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~ 182 (288)
T PRK13643 103 LKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIE 182 (288)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHH
Confidence 999988654221 11 1111 23 235677778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|..+.+.|.+||++||..
T Consensus 183 l~~~l~~l~~~g~til~vtHd~ 204 (288)
T PRK13643 183 MMQLFESIHQSGQTVVLVTHLM 204 (288)
T ss_pred HHHHHHHHHHCCCEEEEEecCH
Confidence 9999999987788887777764
No 85
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=5.7e-18 Score=174.30 Aligned_cols=148 Identities=15% Similarity=0.097 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.+++ . .|.|.+++. .+.. ... .....+.+++++|++...++..|+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~-~~~----~~~~~~~i~~v~q~~~~~~~~~tv 95 (274)
T PRK13644 26 KKGEYIGIIGKNGSGKSTLALHLNGLLRP-Q--KGKVLVSGI--DTGD-FSK----LQGIRKLVGIVFQNPETQFVGRTV 95 (274)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CceEEECCE--ECCc-ccc----HHHHHhheEEEEEChhhhcccchH
Confidence 47899999999999999999999999875 3 356666652 2211 000 001124689999975444667899
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||+|+ .+|+||+||||++ +|+..+..+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987543211 0 0111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++.++.++|.+||++||..
T Consensus 176 ~~~l~~l~~~g~til~~tH~~ 196 (274)
T PRK13644 176 LERIKKLHEKGKTIVYITHNL 196 (274)
T ss_pred HHHHHHHHhCCCEEEEEecCH
Confidence 999999987788888888864
No 86
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=7.1e-18 Score=171.88 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=104.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|+|.+++. ++. . ....+++++|++ .+++..||
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~----~-------~~~~~~~v~q~~-~~~~~~tv 87 (255)
T PRK11248 25 ESGELLVVLGPSGCGKTTLLNLIAGFVPY-Q--HGSITLDGK--PVE----G-------PGAERGVVFQNE-GLLPWRNV 87 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ECC----C-------CCCcEEEEeCCC-ccCCCCcH
Confidence 47899999999999999999999999875 2 456766652 111 0 012478999974 45667899
Q ss_pred HHHHHHHHhhhh--H----HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . ..... .+....++.+.+||||+ .+|++|+||||++ +|+..+..+
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 167 (255)
T PRK11248 88 QDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQM 167 (255)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH
Confidence 999987543211 0 01111 23345567788999997 7999999999999 999999999
Q ss_pred HHHHHHHHh-CCcEEEEecCCC
Q 007851 311 SGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.++|..+.+ .|.+||++||..
T Consensus 168 ~~~L~~~~~~~g~tviivsH~~ 189 (255)
T PRK11248 168 QTLLLKLWQETGKQVLLITHDI 189 (255)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 999999865 477777777764
No 87
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.75 E-value=9.3e-18 Score=171.36 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=104.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ .+|.|.+++- .+. .. .+.+++++|+. .+++.+||
T Consensus 36 ~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p---~~G~i~~~g~--~~~----~~-------~~~i~~v~q~~-~l~~~~tv 98 (257)
T PRK11247 36 PAGQFVAVVGRSGCGKSTLLRLLAGLETP---SAGELLAGTA--PLA----EA-------REDTRLMFQDA-RLLPWKKV 98 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCE--EHH----Hh-------hCceEEEecCc-cCCCCCcH
Confidence 47899999999999999999999999975 2456766542 111 11 24589999974 45566899
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSR 316 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~ 316 (587)
.+|+.+.......... ...+....++.+.+||||| .+|++|+||||++ +|+.....+.++|..
T Consensus 99 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~ 178 (257)
T PRK11247 99 IDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIES 178 (257)
T ss_pred HHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 9999865321101111 1223455677788999997 7999999999999 999999999999999
Q ss_pred HHh-CCcEEEEecCCC
Q 007851 317 LLS-TGTVLVATSNRA 331 (587)
Q Consensus 317 L~~-~G~vvV~TSn~~ 331 (587)
+.+ .|.+||++||..
T Consensus 179 ~~~~~~~tviivsHd~ 194 (257)
T PRK11247 179 LWQQHGFTVLLVTHDV 194 (257)
T ss_pred HHHHcCCEEEEEeCCH
Confidence 865 477777777764
No 88
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=4.2e-18 Score=183.96 Aligned_cols=146 Identities=14% Similarity=0.132 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH----HHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE----HMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~----~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
.+|+.++|+||||||||||+++|+|+++| . .|.|.+++. ++.. .+... .++.++|++|+ ..+++
T Consensus 52 ~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p-~--sG~I~i~G~--~i~~~~~~~l~~~------~~~~igyv~Q~-~~l~~ 119 (400)
T PRK10070 52 EEGEIFVIMGLSGSGKSTMVRLLNRLIEP-T--RGQVLIDGV--DIAKISDAELREV------RRKKIAMVFQS-FALMP 119 (400)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC-C--CCEEEECCE--ECCcCCHHHHHHH------HhCCEEEEECC-CcCCC
Confidence 57899999999999999999999999986 2 356666652 2210 11111 12468999997 45677
Q ss_pred CCcHHHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 250 DSKVMEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+||.+|+.++....+ . .... ..+....++.+.+||||| .+|+||+||||++ +|+..
T Consensus 120 ~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 120 HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 8999999998754321 1 1111 123445777888999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+..+.++|.++.+ .|.+||++||..
T Consensus 200 r~~l~~~L~~l~~~~g~TIIivTHd~ 225 (400)
T PRK10070 200 RTEMQDELVKLQAKHQRTIVFISHDL 225 (400)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCH
Confidence 9999999999976 477777777764
No 89
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.75 E-value=6e-18 Score=170.25 Aligned_cols=148 Identities=16% Similarity=0.114 Sum_probs=105.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++++|.+++ .+|+|.+++. ++...-... ....+.++|++|+. .+++.+||
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~~~~~~----~~~~~~i~~~~q~~-~~~~~~tv 94 (240)
T PRK09493 25 DQGEVVVIIGPSGSGKSTLLRCINKLEEI---TSGDLIVDGL--KVNDPKVDE----RLIRQEAGMVFQQF-YLFPHLTA 94 (240)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECCcCChhH----HHHhhceEEEeccc-ccCCCCcH
Confidence 47899999999999999999999999875 2456777653 211000000 01124689999873 56667899
Q ss_pred HHHHHHHHh-hhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEK-YKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~-~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.+... ..+ .. ... ..+....++.+.+||+|+ .+|+||+||||+. +|+.....
T Consensus 95 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 174 (240)
T PRK09493 95 LENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHE 174 (240)
T ss_pred HHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 999987532 111 10 011 123445677778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.+++..+.++|.+||++||..
T Consensus 175 l~~~l~~~~~~~~tiii~sH~~ 196 (240)
T PRK09493 175 VLKVMQDLAEEGMTMVIVTHEI 196 (240)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999987788777777754
No 90
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.75 E-value=1e-17 Score=165.64 Aligned_cols=144 Identities=17% Similarity=0.156 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.+++ .+|+|.+++. ++.. . ....+.+++++|++ .+++.+|+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~----~----~~~~~~i~~v~q~~-~~~~~~t~ 87 (213)
T TIGR01277 22 ADGEIVAIMGPSGAGKSTLLNLIAGFIEP---ASGSIKVNDQ--SHTG----L----APYQRPVSMLFQEN-NLFAHLTV 87 (213)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--Eccc----C----ChhccceEEEeccC-ccCCCCcH
Confidence 47899999999999999999999999985 2467777652 2211 0 01124689999974 46667899
Q ss_pred HHHHHHHHhhh------hHHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYK------QEVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~------~~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+..... ...... ..+....++.+.+||+|+ .+|+||+||||+. +|+..+..+
T Consensus 88 ~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~ 167 (213)
T TIGR01277 88 RQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEM 167 (213)
T ss_pred HHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 99997643210 011111 123455677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 168 ~~~l~~~~~~~~~tii~vsh~~ 189 (213)
T TIGR01277 168 LALVKQLCSERQRTLLMVTHHL 189 (213)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999865 77777777764
No 91
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.75 E-value=4.6e-18 Score=183.77 Aligned_cols=146 Identities=20% Similarity=0.222 Sum_probs=108.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.++| . .|.|.+++. ++.. + . .....+.+++++|+ ..+++.+||
T Consensus 27 ~~Geiv~liGpNGaGKSTLLk~LaGll~p-~--sG~I~l~G~--~i~~-~---~--~~~~~~~ig~v~q~-~~l~~~~tv 94 (402)
T PRK09536 27 REGSLVGLVGPNGAGKTTLLRAINGTLTP-T--AGTVLVAGD--DVEA-L---S--ARAASRRVASVPQD-TSLSFEFDV 94 (402)
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCC-C--CcEEEECCE--EcCc-C---C--HHHHhcceEEEccC-CCCCCCCCH
Confidence 47899999999999999999999999986 2 356666652 2211 0 0 01123568999987 466788999
Q ss_pred HHHHHHHHhh-----h--hH---HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKY-----K--QE---VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~-----~--~~---~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.++... . .. ..... .+..++++.+.+||||| ++|+||+||||++ ||+..
T Consensus 95 ~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~ 174 (402)
T PRK09536 95 RQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINH 174 (402)
T ss_pred HHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHH
Confidence 9999875321 1 11 11111 23456778888999997 8999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+.++|+++.++|.+||++||..
T Consensus 175 ~~~l~~lL~~l~~~g~TIIivsHdl 199 (402)
T PRK09536 175 QVRTLELVRRLVDDGKTAVAAIHDL 199 (402)
T ss_pred HHHHHHHHHHHHhcCCEEEEEECCH
Confidence 9999999999987788888888864
No 92
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.6e-18 Score=175.45 Aligned_cols=148 Identities=13% Similarity=0.046 Sum_probs=107.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ .. |.|.+++. .+... ... ...++.+++++|++...++..+|
T Consensus 34 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~i~g~--~i~~~-~~~----~~~~~~i~~v~q~~~~~~~~~~v 103 (280)
T PRK13633 34 KKGEFLVILGRNGSGKSTIAKHMNALLIP-SE--GKVYVDGL--DTSDE-ENL----WDIRNKAGMVFQNPDNQIVATIV 103 (280)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECCE--ecccc-ccH----HHHhhheEEEecChhhhhccccH
Confidence 47899999999999999999999999985 33 45666552 22110 000 01124689999985444556799
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||+|+ .+|+|||||||++ +|+..+..|
T Consensus 104 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l 183 (280)
T PRK13633 104 EEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREV 183 (280)
T ss_pred HHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987643211 0 0111 134556777888999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 184 ~~~l~~l~~~~g~tillvtH~~ 205 (280)
T PRK13633 184 VNTIKELNKKYGITIILITHYM 205 (280)
T ss_pred HHHHHHHHHhcCCEEEEEecCh
Confidence 9999999764 88777777765
No 93
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.74 E-value=9.9e-18 Score=167.28 Aligned_cols=150 Identities=15% Similarity=0.128 Sum_probs=105.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|.+++ ..|.|.+++. .+...-..... ......+++++|+. .+++.+|+
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~--~~~~~~~~~~~--~~~~~~i~~~~q~~-~l~~~~tv 105 (228)
T PRK10584 34 KRGETIALIGESGSGKSTLLAILAGLDDG---SSGEVSLVGQ--PLHQMDEEARA--KLRAKHVGFVFQSF-MLIPTLNA 105 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeeEEECCE--EcccCCHHHHH--HHHhheEEEEEccc-ccCCCcCH
Confidence 47899999999999999999999999875 2456777652 11100000000 00123589999873 45667899
Q ss_pred HHHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+...... . .... ..+....++.+.+||+|+ .+|+||+||||++ +|+.....+
T Consensus 106 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 185 (228)
T PRK10584 106 LENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI 185 (228)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 999987532211 0 1111 123445667788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+++.++.++ |.+||++||..
T Consensus 186 ~~~l~~~~~~~~~tii~~sH~~ 207 (228)
T PRK10584 186 ADLLFSLNREHGTTLILVTHDL 207 (228)
T ss_pred HHHHHHHHHhcCCEEEEEecCH
Confidence 9999999764 77777777763
No 94
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.74 E-value=6.7e-18 Score=179.91 Aligned_cols=150 Identities=17% Similarity=0.136 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|.|.+++. ++....... .....++.++|+||+. .+++.+||
T Consensus 22 ~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p-~--~G~I~~~g~--~~~~~~~~~--~~~~~~~~i~~v~q~~-~l~~~~tv 93 (352)
T PRK11144 22 PAQGITAIFGRSGAGKTSLINAISGLTRP-Q--KGRIVLNGR--VLFDAEKGI--CLPPEKRRIGYVFQDA-RLFPHYKV 93 (352)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--ceEEEECCE--Ecccccccc--ccchhhCCEEEEcCCc-ccCCCCcH
Confidence 46899999999999999999999999975 2 456666552 111000000 0011235689999974 56778999
Q ss_pred HHHHHHHHhhhhHHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSR 316 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~ 316 (587)
.+|+.++.......... ..+....++.+.+||||| .+|++|+||||++ +|+..+..+.++|++
T Consensus 94 ~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~ 173 (352)
T PRK11144 94 RGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173 (352)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 99998764321111111 123456778888999997 7999999999999 999999999999999
Q ss_pred HHhC-CcEEEEecCCC
Q 007851 317 LLST-GTVLVATSNRA 331 (587)
Q Consensus 317 L~~~-G~vvV~TSn~~ 331 (587)
+.++ |.++|++||..
T Consensus 174 l~~~~g~tii~vTHd~ 189 (352)
T PRK11144 174 LAREINIPILYVSHSL 189 (352)
T ss_pred HHHhcCCeEEEEecCH
Confidence 9876 77777777754
No 95
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.4e-18 Score=175.96 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=107.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH-HHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN-EHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~-~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|.+++ . .|.|.+++.-.... ..... .++.++|++|++...++..|
T Consensus 30 ~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p-~--~G~i~i~g~~~~~~~~~~~~-------~~~~ig~v~q~~~~~~~~~t 99 (283)
T PRK13636 30 KKGEVTAILGGNGAGKSTLFQNLNGILKP-S--SGRILFDGKPIDYSRKGLMK-------LRESVGMVFQDPDNQLFSAS 99 (283)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--ccEEEECCEECCCCcchHHH-------HHhhEEEEecCcchhhcccc
Confidence 47999999999999999999999999985 2 45666665311000 00011 12468999998544556789
Q ss_pred HHHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|+.++....+ . .... ..+....++.+.+||+|+ .+|+|||||||+. +|+..+..
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 9999987543211 0 0011 124456777888999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++..+.++ |.+||++||..
T Consensus 180 l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 180 IMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEecCH
Confidence 99999999875 78777777764
No 96
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=9e-18 Score=169.29 Aligned_cols=146 Identities=23% Similarity=0.184 Sum_probs=105.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++++|..++ .+|.|.+++. ++.. ... ...+..++|++|++ .+++.+|+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~----~~~--~~~~~~i~~~~q~~-~~~~~~tv 92 (242)
T cd03295 25 AKGEFLVLIGPSGSGKTTTMKMINRLIEP---TSGEIFIDGE--DIRE----QDP--VELRRKIGYVIQQI-GLFPHMTV 92 (242)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCe--EcCc----CCh--HHhhcceEEEccCc-cccCCCcH
Confidence 47899999999999999999999999875 2456777652 2210 000 01124679999973 56667999
Q ss_pred HHHHHHHHhhhh--H----HHHhc-----cHH--HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMKN-----ILP--AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~~-----~L~--~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
.+|+.+.....+ . ..... .+. ...++.+.+||+|+ .+|++|+||||++ +|+..+.
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 172 (242)
T cd03295 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRD 172 (242)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHH
Confidence 999987543211 0 01111 122 25677778999997 7999999999999 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+.+++.++.++ |.+||++||..
T Consensus 173 ~l~~~L~~~~~~~g~tvii~sH~~ 196 (242)
T cd03295 173 QLQEEFKRLQQELGKTIVFVTHDI 196 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCH
Confidence 999999999765 78777777764
No 97
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.74 E-value=4.2e-18 Score=181.57 Aligned_cols=150 Identities=15% Similarity=0.117 Sum_probs=108.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.+++ ..|+|.+++. ++....... .....++.+++++|++ .+++.+||
T Consensus 21 ~~Gei~~l~G~nGsGKSTLl~~iaGl~~p---~~G~I~~~g~--~i~~~~~~~--~~~~~~~~i~~v~q~~-~l~~~~tv 92 (354)
T TIGR02142 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRP---DEGEIVLNGR--TLFDSRKGI--FLPPEKRRIGYVFQEA-RLFPHLSV 92 (354)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECccCcccc--ccchhhCCeEEEecCC-ccCCCCcH
Confidence 46899999999999999999999999985 2456766652 221100000 0011235689999974 56778999
Q ss_pred HHHHHHHHhhhhHH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 254 ~eni~~~~~~~~~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
.+|+.++....... ... ..+....++.+.+||||| .+|++|+||||++ +|+..+..+.+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~ 172 (354)
T TIGR02142 93 RGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILP 172 (354)
T ss_pred HHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH
Confidence 99998764321110 111 123456777888999997 7999999999999 99999999999
Q ss_pred HHHHHHhC-CcEEEEecCCC
Q 007851 313 IVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 313 Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+|.++.++ |.+||++||..
T Consensus 173 ~L~~l~~~~g~tiiivtH~~ 192 (354)
T TIGR02142 173 YLERLHAEFGIPILYVSHSL 192 (354)
T ss_pred HHHHHHHhcCCEEEEEecCH
Confidence 99999875 77777777754
No 98
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=6.2e-18 Score=174.27 Aligned_cols=146 Identities=16% Similarity=0.202 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|.++| .+|.|.+++. ++.. ... ...+.+++++|++...++..|
T Consensus 28 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~~~~~-------~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 28 PRNSRIAVIGPNGAGKSTLFRHFNGILKP---TSGSVLIRGE--PITKENIR-------EVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--ECCcCCHH-------HHHhheEEEecCccccccccc
Confidence 47999999999999999999999999885 2456776652 2110 000 112467999998544456789
Q ss_pred HHHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.++....+ .. ... ..+....++.+.+||+|+ .+|+||+||||+. +|+..+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 9999987543211 00 011 123455677788999997 7999999999998 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++.++.++ |.+||++||..
T Consensus 176 l~~~l~~l~~~~g~tvli~tH~~ 198 (277)
T PRK13652 176 LIDFLNDLPETYGMTVIFSTHQL 198 (277)
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999875 88888887764
No 99
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.5e-18 Score=176.51 Aligned_cols=151 Identities=16% Similarity=0.171 Sum_probs=107.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|.|.+++. ++...... ......++.++|+||++...++..||
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~i~~~~~~--~~~~~~~~~ig~v~q~~~~~l~~~tv 103 (290)
T PRK13634 31 PSGSYVAIIGHTGSGKSTLLQHLNGLLQP-T--SGTVTIGER--VITAGKKN--KKLKPLRKKVGIVFQFPEHQLFEETV 103 (290)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-C--CcEEEECCE--ECcccccc--chHHHHHhhEEEEeeCchhhhhhhhH
Confidence 57899999999999999999999999985 2 356666552 11100000 00001124689999985444557899
Q ss_pred HHHHHHHHhhhh--H----HHHh-----ccHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMK-----NILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~-----~~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.++....+ . .... ..+. .++++.+.+||+|| .+|+||+||||++ +|+..+..
T Consensus 104 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~ 183 (290)
T PRK13634 104 EKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKE 183 (290)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 999987654221 1 0111 1232 45677788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++..+.++ |.+||++||..
T Consensus 184 l~~~L~~l~~~~g~tviiitHd~ 206 (290)
T PRK13634 184 MMEMFYKLHKEKGLTTVLVTHSM 206 (290)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999775 88777777764
No 100
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=4.3e-18 Score=174.75 Aligned_cols=149 Identities=14% Similarity=0.133 Sum_probs=105.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ .+|.|.+++. ++.. .. ......++.+++++|+....++..++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~i~~--~~--~~~~~~~~~i~~v~q~~~~~~~~~~~ 95 (271)
T PRK13638 25 SLSPVTGLVGANGCGKSTLFMNLSGLLRP---QKGAVLWQGK--PLDY--SK--RGLLALRQQVATVFQDPEQQIFYTDI 95 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC---CccEEEECCE--Eccc--cc--CCHHHHHhheEEEeeChhhccccccH
Confidence 46899999999999999999999999985 2456766652 2210 00 00001124689999975444556789
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. .... .+....++.+.+||||+ .+|+|||||||++ +|+..+..+
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l 175 (271)
T PRK13638 96 DSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQM 175 (271)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987533211 10 0111 23345566778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|.++.++|.+||++||..
T Consensus 176 ~~~l~~~~~~g~tii~vtH~~ 196 (271)
T PRK13638 176 IAIIRRIVAQGNHVIISSHDI 196 (271)
T ss_pred HHHHHHHHHCCCEEEEEeCCH
Confidence 999999987788777777764
No 101
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.74 E-value=7.8e-18 Score=168.23 Aligned_cols=147 Identities=14% Similarity=0.121 Sum_probs=105.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ . .|.|.+++. ++...-... .....++|++|+. .+++.+|+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~~-----~~~~~i~~~~q~~-~~~~~~tv 92 (230)
T TIGR03410 24 PKGEVTCVLGRNGVGKTTLLKTLMGLLPV-K--SGSIRLDGE--DITKLPPHE-----RARAGIAYVPQGR-EIFPRLTV 92 (230)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CCEEEECCE--ECCCCCHHH-----HHHhCeEEeccCC-cccCCCcH
Confidence 47899999999999999999999999985 2 356666652 111000000 0124589999974 45667899
Q ss_pred HHHHHHHHhhhhH--HH-Hhc------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--VQ-MKN------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~-~~~------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
.+|+.+.....+. .. ... .+....++.+.+||+|+ .+|++|+||||+. +|+.....+.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~ 172 (230)
T TIGR03410 93 EENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGR 172 (230)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHH
Confidence 9999875432211 10 011 13345677778999997 7999999999999 99999999999
Q ss_pred HHHHHHhC-CcEEEEecCCC
Q 007851 313 IVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 313 Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+|.++.++ |.+||++||..
T Consensus 173 ~l~~~~~~~~~tii~~sH~~ 192 (230)
T TIGR03410 173 VIRRLRAEGGMAILLVEQYL 192 (230)
T ss_pred HHHHHHHcCCcEEEEEeCCH
Confidence 99999875 77877777764
No 102
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.74 E-value=1.1e-17 Score=166.62 Aligned_cols=150 Identities=17% Similarity=0.162 Sum_probs=105.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|+|.+++. ++...-.. .....++.++|++|++. .+++.+|
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~---~~~~~~~~i~~~~q~~~~~~~~~~t 100 (228)
T cd03257 29 KKGETLGLVGESGSGKSTLARAILGLLKP-T--SGSIIFDGK--DLLKLSRR---LRKIRRKEIQMVFQDPMSSLNPRMT 100 (228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--Eccccchh---hHHHhhccEEEEecCchhhcCCcCC
Confidence 47899999999999999999999999875 2 456666652 22110000 00011346899999853 3556799
Q ss_pred HHHHHHHHHhhhh-----HH-H-H-hc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 253 VMEWVAAEEKYKQ-----EV-Q-M-KN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 253 V~eni~~~~~~~~-----~~-~-~-~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
|.+|+.+...... .. . . .. .+ ....++.+.+||+|+ .+|+||+||||++ +|+..
T Consensus 101 v~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~ 180 (228)
T cd03257 101 IGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSV 180 (228)
T ss_pred HHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHH
Confidence 9999986533211 00 0 0 01 12 234566678999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.+++.++.++ |.+||++||..
T Consensus 181 ~~~l~~~l~~~~~~~~~tii~~sH~~ 206 (228)
T cd03257 181 QAQILDLLKKLQEELGLTLLFITHDL 206 (228)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999999875 77877777764
No 103
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=8.8e-18 Score=172.42 Aligned_cols=149 Identities=17% Similarity=0.116 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|.+++. ++... ....+ ....+.+++++|+. .+++.+|
T Consensus 48 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p---~~G~i~i~g~--~~~~~~~~~~~---~~~~~~i~~v~q~~-~~~~~~t 118 (269)
T cd03294 48 REGEIFVIMGLSGSGKSTLLRCINRLIEP---TSGKVLIDGQ--DIAAMSRKELR---ELRRKKISMVFQSF-ALLPHRT 118 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCE--EccccChhhhh---hhhcCcEEEEecCc-ccCCCCc
Confidence 47899999999999999999999999985 2456766652 22110 00000 00124689999974 5666799
Q ss_pred HHHHHHHHHhhhh--H----HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--E----VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~----~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.+.....+ . .... ..+....++.+.+||+|| .+|+|||||||++ +|+..+..
T Consensus 119 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~ 198 (269)
T cd03294 119 VLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRRE 198 (269)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHH
Confidence 9999987643211 0 0111 123455677788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.++|..+.+. |.+||++||..
T Consensus 199 l~~~l~~~~~~~g~tiii~tH~~ 221 (269)
T cd03294 199 MQDELLRLQAELQKTIVFITHDL 221 (269)
T ss_pred HHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999764 77777777763
No 104
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1e-17 Score=165.22 Aligned_cols=142 Identities=17% Similarity=0.140 Sum_probs=103.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
+| .++|+||||||||||+++++|.+++ . .|.|.+++. ++...-.. .++.+++++|++ .+++.+||.
T Consensus 25 ~g-~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~~-------~~~~i~~~~q~~-~~~~~~tv~ 90 (211)
T cd03264 25 PG-MYGLLGPNGAGKTTLMRILATLTPP-S--SGTIRIDGQ--DVLKQPQK-------LRRRIGYLPQEF-GVYPNFTVR 90 (211)
T ss_pred CC-cEEEECCCCCCHHHHHHHHhCCCCC-C--ccEEEECCC--ccccchHH-------HHhheEEecCCC-cccccCCHH
Confidence 47 9999999999999999999999875 2 456777652 22110011 124689999974 456678999
Q ss_pred HHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 255 EWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 255 eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
+|+.+.....+ . .... ..+....+..+.+||+|+ .+|++|+||||+. +|+.....+.
T Consensus 91 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~ 170 (211)
T cd03264 91 EFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFR 170 (211)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH
Confidence 99987543221 0 0111 123445677788999997 7999999999999 9999999999
Q ss_pred HHHHHHHhCCcEEEEecCCC
Q 007851 312 GIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 312 ~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++++++.+ +.+||++||..
T Consensus 171 ~~l~~~~~-~~tii~vsH~~ 189 (211)
T cd03264 171 NLLSELGE-DRIVILSTHIV 189 (211)
T ss_pred HHHHHHhC-CCEEEEEcCCH
Confidence 99999976 46777777753
No 105
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.6e-17 Score=162.34 Aligned_cols=143 Identities=16% Similarity=0.185 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++++|..++ . .|.|.+++. ++.. .. .+.+++++|. ...++.+||
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~i~~----~~------~~~~~~~~~~-~~~~~~~tv 87 (195)
T PRK13541 24 LPSAITYIKGANGCGKSSLLRMIAGIMQP-S--SGNIYYKNC--NINN----IA------KPYCTYIGHN-LGLKLEMTV 87 (195)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC-C--CcEEEECCc--ccCh----hh------hhhEEeccCC-cCCCccCCH
Confidence 47899999999999999999999999875 2 456766652 2211 10 1246788775 356678999
Q ss_pred HHHHHHHHhhhhH-HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQE-VQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVS 315 (587)
Q Consensus 254 ~eni~~~~~~~~~-~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~ 315 (587)
.+|+.+....... ... ...+....++.+.+||+|+ .+|++|+||||+. +|+.....+.+++.
T Consensus 88 ~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~ 167 (195)
T PRK13541 88 FENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIV 167 (195)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 9999875433211 111 1123455677788999997 7999999999998 99999999999998
Q ss_pred HHHhCCcEEEEecCCCc
Q 007851 316 RLLSTGTVLVATSNRAP 332 (587)
Q Consensus 316 ~L~~~G~vvV~TSn~~P 332 (587)
.+.++|.++|++||...
T Consensus 168 ~~~~~~~tiii~sh~~~ 184 (195)
T PRK13541 168 MKANSGGIVLLSSHLES 184 (195)
T ss_pred HHHhCCCEEEEEeCCcc
Confidence 77677888877777653
No 106
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.74 E-value=1.8e-17 Score=164.35 Aligned_cols=172 Identities=19% Similarity=0.207 Sum_probs=126.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+|+||+||||++++|.|.+++ ++ ++|++++ .++...+ ..+|||+|.. ..+++.+||
T Consensus 26 ~~G~i~GllG~NGAGKTTtfRmILglle~-~~--G~I~~~g--~~~~~~~----------~~rIGyLPEE-RGLy~k~tv 89 (300)
T COG4152 26 PPGEIFGLLGPNGAGKTTTFRMILGLLEP-TE--GEITWNG--GPLSQEI----------KNRIGYLPEE-RGLYPKMTV 89 (300)
T ss_pred cCCeEEEeecCCCCCccchHHHHhccCCc-cC--ceEEEcC--cchhhhh----------hhhcccChhh-hccCccCcH
Confidence 57999999999999999999999999986 34 4566555 2332211 2357888876 678999999
Q ss_pred HHHHHHHHhhhhHHH--HhccHHH---------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQ--MKNILPA---------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~~~--~~~~L~~---------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.|.+.|-...++... ....+.. ...+.+.+||.|. ++|++|+||||++ |||.....|
T Consensus 90 ~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elL 169 (300)
T COG4152 90 EDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELL 169 (300)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHH
Confidence 999999877766321 1111221 2334456899984 8999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhhhhh
Q 007851 311 SGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRL 370 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~ 370 (587)
.+.+.++.++|.+||++||++... +..|.-+-+|+ ++..|.-+.-.|.|+.
T Consensus 170 k~~I~~lk~~GatIifSsH~Me~v--------EeLCD~llmL~-kG~~V~~G~v~~ir~~ 220 (300)
T COG4152 170 KDAIFELKEEGATIIFSSHRMEHV--------EELCDRLLMLK-KGQTVLYGTVEDIRRS 220 (300)
T ss_pred HHHHHHHHhcCCEEEEecchHHHH--------HHHhhhhheec-CCceEEeccHHHHHHh
Confidence 999999999999999999987432 55666666664 4444433444566653
No 107
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.74 E-value=1.4e-17 Score=165.78 Aligned_cols=142 Identities=17% Similarity=0.157 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.+++ ..|.|.+++. .+. .. ..+.+++++|+. .+++.+|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~~~--~~~----~~------~~~~~~~~~q~~-~~~~~~t~ 87 (223)
T TIGR03740 24 PKNSVYGLLGPNGAGKSTLLKMITGILRP---TSGEIIFDGH--PWT----RK------DLHKIGSLIESP-PLYENLTA 87 (223)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ecc----cc------ccccEEEEcCCC-CccccCCH
Confidence 47899999999999999999999999875 2456666652 111 00 013578999873 45667899
Q ss_pred HHHHHHHHhhhh--HHHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+|+.+.....+ .... ...+....+..+.+||+|+ .+|++|+||||+. +|+..+..+.+++
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L 167 (223)
T TIGR03740 88 RENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELI 167 (223)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHH
Confidence 999986543221 1111 1123455677788999997 7999999999999 9999999999999
Q ss_pred HHHHhCCcEEEEecCCC
Q 007851 315 SRLLSTGTVLVATSNRA 331 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~~ 331 (587)
.++.+.|.+||++||..
T Consensus 168 ~~~~~~~~tiii~sH~~ 184 (223)
T TIGR03740 168 RSFPEQGITVILSSHIL 184 (223)
T ss_pred HHHHHCCCEEEEEcCCH
Confidence 99987788777777763
No 108
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.74 E-value=9.3e-18 Score=162.27 Aligned_cols=137 Identities=20% Similarity=0.205 Sum_probs=97.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC--CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT--NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~--~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++++|..++ ..++|.+++. ++...-.. ...++.+++++|++. .+++.+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~~~~~-----~~~~~~i~~~~q~~~~~~~~~~~ 93 (182)
T cd03215 24 RAGEIVGIAGLVGNGQTELAEALFGLRPP---ASGEITLDGK--PVTRRSPR-----DAIRAGIAYVPEDRKREGLVLDL 93 (182)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCE--ECCccCHH-----HHHhCCeEEecCCcccCcccCCC
Confidence 47899999999999999999999999985 2456666652 22110000 011246899999752 467778
Q ss_pred cHHHHHHHHHhhh-hHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 252 KVMEWVAAEEKYK-QEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 252 tV~eni~~~~~~~-~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
|+.||+.+..... +.. . .-.+|..+. .+|+||+||||+. +|+.....+.+++..+.++|.++|++||
T Consensus 94 t~~e~l~~~~~LS~G~~---q-rl~la~al~-------~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 162 (182)
T cd03215 94 SVAENIALSSLLSGGNQ---Q-KVVLARWLA-------RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISS 162 (182)
T ss_pred cHHHHHHHHhhcCHHHH---H-HHHHHHHHc-------cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 9999997653211 111 0 112444444 6899999999999 9999999999999999877888888877
Q ss_pred CC
Q 007851 330 RA 331 (587)
Q Consensus 330 ~~ 331 (587)
..
T Consensus 163 ~~ 164 (182)
T cd03215 163 EL 164 (182)
T ss_pred CH
Confidence 64
No 109
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.74 E-value=7.6e-18 Score=180.84 Aligned_cols=148 Identities=21% Similarity=0.136 Sum_probs=109.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhH--HHHH----HHHHHHhhhhhhcccceeeeeccCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--LKIN----EHMHRLWKNQVAEKSLRSSISGWITNL 247 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm--~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~~~ 247 (587)
.+|+.++|+|+||||||||+++|+|.++| . .|+|.+++-. .++. ..+... ..+.++|+||+ ..+
T Consensus 48 ~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p-~--~G~I~idG~~~~~~i~~~~~~~l~~~------r~~~i~~vfQ~-~~l 117 (382)
T TIGR03415 48 EEGEICVLMGLSGSGKSSLLRAVNGLNPV-S--RGSVLVKDGDGSIDVANCDAATLRRL------RTHRVSMVFQK-FAL 117 (382)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC-C--CcEEEECCEecccccccCCHHHHHHH------hcCCEEEEECC-CcC
Confidence 47899999999999999999999999986 2 3566665410 0111 111111 12468999997 456
Q ss_pred CCCCcHHHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 248 PFDSKVMEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 248 ~~~~tV~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++.+||.+|+.++....+ .. ... ..+....++.+.+||||+ .+|+|||+|||++ +|+
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~ 197 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDP 197 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 778999999998754321 11 111 123456777888999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+..+.++|.++.++ |.+||++||..
T Consensus 198 ~~r~~l~~~L~~l~~~~~~TII~iTHdl 225 (382)
T TIGR03415 198 LIRTQLQDELLELQAKLNKTIIFVSHDL 225 (382)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999999875 78877777764
No 110
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=5.3e-18 Score=160.14 Aligned_cols=147 Identities=17% Similarity=0.143 Sum_probs=112.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH----HHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE----HMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~----~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
..+|+.++|+||+||||||||-+++|+..+ .+|..++..+. ++. ....+ +.+.+|+|||. ..+.
T Consensus 33 v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~-ssGeV~l~G~~----L~~ldEd~rA~~------R~~~vGfVFQS-F~Li 100 (228)
T COG4181 33 VKRGETVAIVGPSGSGKSTLLAVLAGLDDP-SSGEVRLLGQP----LHKLDEDARAAL------RARHVGFVFQS-FHLI 100 (228)
T ss_pred ecCCceEEEEcCCCCcHHhHHHHHhcCCCC-CCceEEEcCcc----hhhcCHHHHHHh------hccceeEEEEe-eecc
Confidence 357899999999999999999999999886 45666664332 221 11122 24679999997 5688
Q ss_pred CCCcHHHHHHHHHhhhhHH--H----Hhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 249 FDSKVMEWVAAEEKYKQEV--Q----MKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~--~----~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+++|..||++.++...+.. . ... .+..-...++.+||||+ ..|+||+.||||- +|-+
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 9999999999988776521 1 111 22334667788999996 6999999999998 9999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
....+.+|+-.+..+ |+++|+.+|.+
T Consensus 181 Tg~~iaDLlF~lnre~G~TlVlVTHD~ 207 (228)
T COG4181 181 TGDKIADLLFALNRERGTTLVLVTHDP 207 (228)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeCCH
Confidence 999999999888764 88887777754
No 111
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.74 E-value=8.9e-18 Score=169.03 Aligned_cols=146 Identities=17% Similarity=0.120 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|.++| . .+.|.+++. .+... . ....+.+++++++...+++.+|+
T Consensus 45 ~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p-~--~G~i~~~g~--~~~~~----~---~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 45 EKGEIVGFIGPNGAGKTTTLKILSGLLQP-T--SGEVRVAGL--VPWKR----R---KKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC-C--ceEEEECCE--Ecccc----c---hhhcccEEEEcCCccccCCCCcH
Confidence 47899999999999999999999999875 2 356666552 11110 0 01124678888654556678999
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. ... ..+....+..+.+||+|+ .+|+||+||||+. +|+..+..+
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l 192 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENI 192 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 999976543221 10 011 123445566778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|..+.++ |.+||++||..
T Consensus 193 ~~~l~~~~~~~~~tiiivsH~~ 214 (236)
T cd03267 193 RNFLKEYNRERGTTVLLTSHYM 214 (236)
T ss_pred HHHHHHHHhcCCCEEEEEecCH
Confidence 9999999765 67777777764
No 112
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1e-17 Score=167.89 Aligned_cols=144 Identities=15% Similarity=0.117 Sum_probs=105.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ . .|.|.+++. ++.. .. .....+++++|++ .+++.+|+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~----~~----~~~~~i~~~~q~~-~~~~~~tv 88 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLTP-A--SGSLTLNGQ--DHTT----TP----PSRRPVSMLFQEN-NLFSHLTV 88 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCe--ecCc----CC----hhhccEEEEeccc-ccccCCcH
Confidence 47899999999999999999999999875 2 356766652 1110 00 0124689999974 45666899
Q ss_pred HHHHHHHHhh----hh--HHHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKY----KQ--EVQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~----~~--~~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++... .. .... ...+....++.+.+||+|+ .+|++|+||||+. +|+..+..+
T Consensus 89 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~ 168 (232)
T PRK10771 89 AQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEM 168 (232)
T ss_pred HHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 9999864311 00 0111 1124556777888999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+++..+.++ |.+||++||..
T Consensus 169 ~~~l~~~~~~~~~tiii~sH~~ 190 (232)
T PRK10771 169 LTLVSQVCQERQLTLLMVSHSL 190 (232)
T ss_pred HHHHHHHHHhcCCEEEEEECCH
Confidence 9999998764 77777777764
No 113
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=7.6e-18 Score=174.10 Aligned_cols=149 Identities=13% Similarity=0.100 Sum_probs=108.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccc-eEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKH-RQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~-k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++. .+ .|.|.+++. ++... .. ...+..+++++|++...++..|
T Consensus 31 ~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~-~g~~G~i~i~g~--~~~~~-~~-----~~~~~~ig~v~q~~~~~~~~~t 101 (282)
T PRK13640 31 PRGSWTALIGHNGSGKSTISKLINGLLLPD-DNPNSKITVDGI--TLTAK-TV-----WDIREKVGIVFQNPDNQFVGAT 101 (282)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcccCCC-CCCCcEEEECCE--ECCcC-CH-----HHHHhheEEEEECHHHhhccCC
Confidence 478999999999999999999999999752 31 256777653 22110 00 0112468999998544667899
Q ss_pred HHHHHHHHHhhhh--HHH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--EVQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~--~~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.+|+.+.....+ ... .. ..+....++.+.+||+|+ .+|+||++|||+. +|+..+..
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~ 181 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 9999987543221 100 11 123455677788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.++|..+.++ |.+||++||..
T Consensus 182 l~~~l~~l~~~~g~tvli~tH~~ 204 (282)
T PRK13640 182 ILKLIRKLKKKNNLTVISITHDI 204 (282)
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999865 77777777754
No 114
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.74 E-value=1.7e-17 Score=170.19 Aligned_cols=148 Identities=22% Similarity=0.178 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| . .+.|.+++. ++... .... ...++.+++++|+. .+++.+|
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~i~~~~~~~~----~~~~~~i~~v~q~~-~~~~~~t 100 (269)
T PRK11831 31 PRGKITAIMGPSGIGKTTLLRLIGGQIAP-D--HGEILFDGE--NIPAMSRSRL----YTVRKRMSMLFQSG-ALFTDMN 100 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--EccccChhhH----HHHhhcEEEEeccc-ccCCCCC
Confidence 47899999999999999999999999975 2 356666542 11100 0000 01124589999973 4566789
Q ss_pred HHHHHHHHHhhh---hHH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 253 VMEWVAAEEKYK---QEV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 253 V~eni~~~~~~~---~~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
+.+|+.++.... ... ... ..+....++.+.+||||| .+|+||+||||++ +|+....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~ 180 (269)
T PRK11831 101 VFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180 (269)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHH
Confidence 999998753221 110 011 123445667778999997 7999999999999 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+.+++..+.++ |.+||++||..
T Consensus 181 ~l~~~l~~~~~~~g~tiiivsH~~ 204 (269)
T PRK11831 181 VLVKLISELNSALGVTCVVVSHDV 204 (269)
T ss_pred HHHHHHHHHHHhcCcEEEEEecCH
Confidence 999999999765 77777777753
No 115
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.74 E-value=1.5e-17 Score=164.10 Aligned_cols=143 Identities=19% Similarity=0.224 Sum_probs=105.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++++|..++ . .|.|.+++. ++.. ... ...+++++|. ...++.+|+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~--~~~-------~~~~~~~~~~-~~~~~~~tv 90 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIAGLLPP-A--AGTIKLDGG--DIDD--PDV-------AEACHYLGHR-NAMKPALTV 90 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--eCcc--hhh-------HhhcEEecCC-CcCCCCCcH
Confidence 47899999999999999999999999875 2 456766652 1110 011 2356888765 345677999
Q ss_pred HHHHHHHHhhhh--HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+|+.+.....+ ..... ..+....+..+.+||+|+ .+|++|+||||+. +|+.....+.++|
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l 170 (207)
T PRK13539 91 AENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELI 170 (207)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 999976543221 11111 123345566778999997 7999999999999 9999999999999
Q ss_pred HHHHhCCcEEEEecCCC
Q 007851 315 SRLLSTGTVLVATSNRA 331 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~~ 331 (587)
.++.++|.+||++||..
T Consensus 171 ~~~~~~~~tiii~sH~~ 187 (207)
T PRK13539 171 RAHLAQGGIVIAATHIP 187 (207)
T ss_pred HHHHHCCCEEEEEeCCc
Confidence 99887888887777764
No 116
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=6.3e-18 Score=175.05 Aligned_cols=151 Identities=13% Similarity=0.115 Sum_probs=106.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|.+++. ++...... ......++.+|++||++...++..||
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p---~~G~i~~~g~--~i~~~~~~--~~~~~~~~~ig~v~q~~~~~l~~~tv 103 (286)
T PRK13646 31 EQGKYYAIVGQTGSGKSTLIQNINALLKP---TTGTVTVDDI--TITHKTKD--KYIRPVRKRIGMVFQFPESQLFEDTV 103 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--ECcccccc--chHHHHHhheEEEecChHhccchhhH
Confidence 47899999999999999999999999986 2456666652 22100000 00001134689999985444555799
Q ss_pred HHHHHHHHhhhh--H----HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.++....+ . ..... .+. ...++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 104 ~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~ 183 (286)
T PRK13646 104 EREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQ 183 (286)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 999987643211 1 01111 232 45566788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.+++..+.++ |.+||++||..
T Consensus 184 l~~~l~~l~~~~g~tvl~vtH~~ 206 (286)
T PRK13646 184 VMRLLKSLQTDENKTIILVSHDM 206 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEecCH
Confidence 99999999764 88877777764
No 117
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.73 E-value=1.5e-17 Score=168.26 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH--HHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH--MHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~--l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|.+++ . .+.|.+++. ++... ...........+..+++++|+. .+++..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~~~~~~~~~~~~~~i~~v~q~~-~~~~~~ 100 (250)
T PRK11264 27 KPGEVVAIIGPSGSGKTTLLRCINLLEQP-E--AGTIRVGDI--TIDTARSLSQQKGLIRQLRQHVGFVFQNF-NLFPHR 100 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CeEEEECCE--EccccccccchhhHHHHhhhhEEEEecCc-ccCCCC
Confidence 47899999999999999999999999875 2 456666542 11100 0000000001124689999973 456678
Q ss_pred cHHHHHHHHHhh-hh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 252 KVMEWVAAEEKY-KQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 252 tV~eni~~~~~~-~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
|+.+|+.++... .. .. .... .+....++.+.+||+|| .+|+||+||||++ +|+..+
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 180 (250)
T PRK11264 101 TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELV 180 (250)
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 999999864321 11 00 0111 12334566778999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.++|..+.++|.+||++||..
T Consensus 181 ~~l~~~l~~~~~~~~tvi~~tH~~ 204 (250)
T PRK11264 181 GEVLNTIRQLAQEKRTMVIVTHEM 204 (250)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999987787777777753
No 118
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.8e-17 Score=165.60 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=105.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH--HHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN--EHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~--~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.||||||||||+++|+|..++ ..|+|.+++. ++. ...... .....++.+++++|+. .+++.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~~~~~~~~--~~~~~~~~i~~~~q~~-~~~~~~ 97 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLEMP---RSGTLNIAGN--HFDFSKTPSDK--AIRELRRNVGMVFQQY-NLWPHL 97 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ecccccccchh--hHHHHHhheEEEecCc-cccCCC
Confidence 47899999999999999999999999875 3456777663 110 000000 0001124689999963 466678
Q ss_pred cHHHHHHHH-Hhhhh------HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 252 KVMEWVAAE-EKYKQ------EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 252 tV~eni~~~-~~~~~------~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
|+.+|+.+. ....+ ..... ..+....++.+.+||||+ .+|+||+||||++ +|+..+
T Consensus 98 tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~ 177 (242)
T PRK11124 98 TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177 (242)
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHH
Confidence 999999742 21110 00111 123455677788999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.+++.++.++|.++|++||..
T Consensus 178 ~~l~~~l~~~~~~~~tii~~sh~~ 201 (242)
T PRK11124 178 AQIVSIIRELAETGITQVIVTHEV 201 (242)
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999999999987788777777763
No 119
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=8.5e-18 Score=176.91 Aligned_cols=153 Identities=16% Similarity=0.132 Sum_probs=106.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHH----------HHHhhhhhhcccceeeeecc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHM----------HRLWKNQVAEKSLRSSISGW 243 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l----------~~~~~~~~~~~~~ig~v~q~ 243 (587)
.+|+.++|+|+||||||||+++|+|.+++ .. |.|.+++. ++.... ..........++.+++++|+
T Consensus 50 ~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p-~~--G~I~i~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 124 (320)
T PRK13631 50 EKNKIYFIIGNSGSGKSTLVTHFNGLIKS-KY--GTIQVGDI--YIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124 (320)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--CeEEECCE--EcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence 47899999999999999999999999986 33 45655542 111000 00000001123568999998
Q ss_pred CCCCCCCCcHHHHHHHHHhhhh--HH----HHh-----ccHH-HHHhHhhhhhcccC-----------CCccEEEEeCCC
Q 007851 244 ITNLPFDSKVMEWVAAEEKYKQ--EV----QMK-----NILP-AVADKFLVDQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 244 ~~~~~~~~tV~eni~~~~~~~~--~~----~~~-----~~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt 300 (587)
+...++..||.+|+.++....+ .. ... ..+. ...++.+.+||||| .+|+||+||||+
T Consensus 125 ~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPt 204 (320)
T PRK13631 125 PEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPT 204 (320)
T ss_pred chhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 6445566799999987643211 00 011 1222 35666778999997 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+ +|+..+..+.++|.++.++|.+||++||+.
T Consensus 205 sgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~ 236 (320)
T PRK13631 205 AGLDPKGEHEMMQLILDAKANNKTVFVITHTM 236 (320)
T ss_pred cCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 9 999999999999999987788887777764
No 120
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.9e-17 Score=163.72 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+ +.++|+||||||||||+++++|.+++ . .|+|.+++. ++........ ....++.+++++|+. .+++.+|+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~~~--~~~~~~~i~~~~q~~-~~~~~~t~ 92 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEKP-D--GGTIVLNGT--VLFDSRKKIN--LPPQQRKIGLVFQQY-ALFPHLNV 92 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--ecccccchhh--hhhHhhcEEEEecCC-ccCCCCCH
Confidence 46 99999999999999999999999975 2 356666552 1110000000 001124689999873 55667899
Q ss_pred HHHHHHHHhhhh----HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 254 ~eni~~~~~~~~----~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
.+|+.+...... ..... ..+....++.+.+||+|+ .+|++|+||||+. +|+..+..+.+
T Consensus 93 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 172 (214)
T cd03297 93 RENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLP 172 (214)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHH
Confidence 999987543211 11111 123445677778999997 7999999999999 99999999999
Q ss_pred HHHHHHhC-CcEEEEecCCC
Q 007851 313 IVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 313 Ll~~L~~~-G~vvV~TSn~~ 331 (587)
++.++.++ |.+||++||..
T Consensus 173 ~l~~~~~~~~~tiii~sH~~ 192 (214)
T cd03297 173 ELKQIKKNLNIPVIFVTHDL 192 (214)
T ss_pred HHHHHHHHcCcEEEEEecCH
Confidence 99999775 77777777753
No 121
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.73 E-value=1.1e-17 Score=166.78 Aligned_cols=146 Identities=13% Similarity=0.144 Sum_probs=102.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc-----CCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT-----EGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l-----~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.+|+.++|+||||||||||+++|+|.. ++ .+|.|.+++. ++...-... ...++.+++++|+. .++
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~g~--~~~~~~~~~----~~~~~~i~~~~q~~-~~~ 93 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP---DEGEVLLDGK--DIYDLDVDV----LELRRRVGMVFQKP-NPF 93 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCC---CCeEEEECCE--EhhhcchHH----HHHHhhEEEEecCc-hhc
Confidence 478999999999999999999999998 54 3456777653 222100000 01124689999974 344
Q ss_pred CCCcHHHHHHHHHhhhh-------HHHHhc-----cHHHHHhHh--hhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 249 FDSKVMEWVAAEEKYKQ-------EVQMKN-----ILPAVADKF--LVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~-------~~~~~~-----~L~~la~~l--~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.+||.+|+.+.....+ ...... .+....++. +.+||||| .+|++|+||||++ +
T Consensus 94 -~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 94 -PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred -cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 7899999987543211 011111 122334444 48999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.++|.++.++ .+||++||..
T Consensus 173 D~~~~~~l~~~l~~~~~~-~tii~~sH~~ 200 (227)
T cd03260 173 DPISTAKIEELIAELKKE-YTIVIVTHNM 200 (227)
T ss_pred CHHHHHHHHHHHHHHhhC-cEEEEEeccH
Confidence 999999999999999877 7777777764
No 122
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=6.6e-18 Score=173.43 Aligned_cols=147 Identities=16% Similarity=0.140 Sum_probs=106.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|..++ ..|.|.+++. ++.. ... ...++.++|++|+....++.+|+
T Consensus 33 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~--~i~~-~~~-----~~~~~~i~~v~q~~~~~~~~~tv 101 (271)
T PRK13632 33 NEGEYVAILGHNGSGKSTISKILTGLLKP---QSGEIKIDGI--TISK-ENL-----KEIRKKIGIIFQNPDNQFIGATV 101 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCE--ecCc-CCH-----HHHhcceEEEEeCHHHhcCcccH
Confidence 47899999999999999999999999985 2456766653 2211 000 01124689999975335667899
Q ss_pred HHHHHHHHhhhh--HHH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++..... ... .. ..+....++.+.+||+|+ .+|+||+||||++ +|+..+..+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l 181 (271)
T PRK13632 102 EDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREI 181 (271)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987543211 110 11 123455677778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 182 ~~~l~~~~~~~~~tiii~sH~~ 203 (271)
T PRK13632 182 KKIMVDLRKTRKKTLISITHDM 203 (271)
T ss_pred HHHHHHHHHhcCcEEEEEEech
Confidence 9999999876 47777777764
No 123
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=1.5e-17 Score=159.55 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=95.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ ..++|.+++. ++..... ..++.+++++|++ .+++.+|+
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~g~--~~~~~~~-------~~~~~i~~~~q~~-~~~~~~tv 90 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLLKP---DSGEIKVLGK--DIKKEPE-------EVKRRIGYLPEEP-SLYENLTV 90 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCE--EcccchH-------hhhccEEEEecCC-ccccCCcH
Confidence 47899999999999999999999999875 2466777652 2211000 1124689999974 45667899
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+.+... .. . .-.+|..++ .+|++|++|||+. +|+..+..+.++|..+.++|.++|++||..
T Consensus 91 ~~~~~LS~G---~~---q-rv~laral~-------~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~ 155 (173)
T cd03230 91 RENLKLSGG---MK---Q-RLALAQALL-------HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155 (173)
T ss_pred HHHhhcCHH---HH---H-HHHHHHHHH-------cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 999862111 10 0 123455555 6899999999999 999999999999999988887777777754
No 124
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.73 E-value=2.2e-17 Score=174.59 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=108.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCC-CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWIT-NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|++++ ..|.|.|++. ++... ....+ ..++.++|+||++. .+++.+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p---~~G~I~~~G~--~i~~~~~~~~~----~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLVKA---TDGEVAWLGK--DLLGMKDDEWR----AVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCCC---CCcEEEECCE--ECCcCCHHHHH----HHhCceEEEecCchhhcCCCC
Confidence 57899999999999999999999999975 2466777652 22110 00000 11246899999863 466789
Q ss_pred cHHHHHHHHHhhh----hHHH----Hhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYK----QEVQ----MKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~----~~~~----~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
||.+|+.++.... ...+ ... .+ ..++++.+.+||||| .+|+||++|||++ ||+.
T Consensus 116 tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~ 195 (331)
T PRK15079 116 TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVS 195 (331)
T ss_pred CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 9999998764321 1111 111 12 346788889999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+..+.++|..+.++ |.++|++||..
T Consensus 196 ~~~~i~~lL~~l~~~~~~til~iTHdl 222 (331)
T PRK15079 196 IQAQVVNLLQQLQREMGLSLIFIAHDL 222 (331)
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 999999999999875 88777777754
No 125
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=3.2e-17 Score=159.67 Aligned_cols=172 Identities=18% Similarity=0.155 Sum_probs=122.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.++|+||||+||||||+.++|.+.| ..+.+++++...+.... .+..+..++++|+ ..+-|..|
T Consensus 24 ~~pGev~ailGPNGAGKSTlLk~LsGel~p---~~G~v~~~g~~l~~~~~--------~~lA~~raVlpQ~-s~laFpFt 91 (259)
T COG4559 24 LRPGEVLAILGPNGAGKSTLLKALSGELSP---DSGEVTLNGVPLNSWPP--------EELARHRAVLPQN-SSLAFPFT 91 (259)
T ss_pred ccCCcEEEEECCCCccHHHHHHHhhCccCC---CCCeEeeCCcChhhCCH--------HHHHHHhhhcccC-cccccceE
Confidence 357999999999999999999999999975 34677777642221110 1112334677776 67788899
Q ss_pred HHHHHHHHHhhhh---HH-HH---------hccHHHHHhHhhhhhcccC-----------------CCccEEEEeCCCC-
Q 007851 253 VMEWVAAEEKYKQ---EV-QM---------KNILPAVADKFLVDQHADQ-----------------RGASILCFDEIQT- 301 (587)
Q Consensus 253 V~eni~~~~~~~~---~~-~~---------~~~L~~la~~l~~~LSgGq-----------------~~p~LL~LDEPt~- 301 (587)
|.|.|.++..-.+ .. +. ...+..++.+...+||||+ .++++|+|||||+
T Consensus 92 v~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsa 171 (259)
T COG4559 92 VQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSA 171 (259)
T ss_pred HHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccc
Confidence 9999988753221 11 11 1123456777788999995 4667999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchh
Q 007851 302 VDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVD 366 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~-vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~D 366 (587)
+|+..+..++++.+.+.++|. |+++-|+..-...|++.+ ++.+..+|+..+++.|
T Consensus 172 LDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDri----------vll~~Grv~a~g~p~~ 227 (259)
T COG4559 172 LDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRI----------VLLHQGRVIASGSPQD 227 (259)
T ss_pred cchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhhee----------eeeeCCeEeecCCHHH
Confidence 999999999999999999876 666666665566666654 4557788887766643
No 126
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.73 E-value=2e-17 Score=166.57 Aligned_cols=147 Identities=14% Similarity=0.132 Sum_probs=105.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|+|.+++. ++...-... ..+..+++++|++ .+++.+|+
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~~-----~~~~~i~~~~q~~-~~~~~~tv 95 (241)
T PRK10895 27 NSGEIVGLLGPNGAGKTTTFYMVVGIVPR-D--AGNIIIDDE--DISLLPLHA-----RARRGIGYLPQEA-SIFRRLSV 95 (241)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ECCCCCHHH-----HHHhCeEEeccCC-cccccCcH
Confidence 47999999999999999999999999875 2 356666552 111000000 0124589999973 45667899
Q ss_pred HHHHHHHHhhhh---H----HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ---E----VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~---~----~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.+...... . ..... .+....++.+.+||+|+ .+|++|+||||+. +|+.....
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (241)
T PRK10895 96 YDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVID 175 (241)
T ss_pred HHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 999987532210 0 01111 23445567778999997 7999999999998 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.+++..+.++|.+||++||..
T Consensus 176 l~~~l~~~~~~g~tiii~sH~~ 197 (241)
T PRK10895 176 IKRIIEHLRDSGLGVLITDHNV 197 (241)
T ss_pred HHHHHHHHHhcCCEEEEEEcCH
Confidence 9999999987788877777753
No 127
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.73 E-value=2.7e-17 Score=164.91 Aligned_cols=141 Identities=16% Similarity=0.117 Sum_probs=102.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|.|.+++. ++.. . ....++++|+. .+++.+|+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~----~-------~~~~~~v~q~~-~l~~~~tv 71 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQP-T--SGGVILEGK--QITE----P-------GPDRMVVFQNY-SLLPWLTV 71 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--ECCC----C-------ChhheEEecCc-ccCCCCCH
Confidence 46899999999999999999999999975 2 456666552 1110 0 01237888863 45667899
Q ss_pred HHHHHHHHhh--hh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 254 MEWVAAEEKY--KQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 254 ~eni~~~~~~--~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
.+|+.+.... .. .. ... ..+....++.+.+||||+ .+|++|+||||+. +|+..+.
T Consensus 72 ~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 151 (230)
T TIGR01184 72 RENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRG 151 (230)
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHH
Confidence 9999875321 00 00 011 123445677788999997 7999999999999 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+.++|.++.++ |.+||++||..
T Consensus 152 ~l~~~l~~~~~~~~~tii~~sH~~ 175 (230)
T TIGR01184 152 NLQEELMQIWEEHRVTVLMVTHDV 175 (230)
T ss_pred HHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999998765 77777777764
No 128
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=7.2e-18 Score=173.78 Aligned_cols=147 Identities=11% Similarity=0.083 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+|||||||||++|+|..++ . +|.|.+++. ++... .. ......++|++|++...++..||
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~i~~~--~~----~~~~~~i~~v~q~~~~~~~~~tv 99 (277)
T PRK13642 31 TKGEWVSIIGQNGSGKSTTARLIDGLFEE-F--EGKVKIDGE--LLTAE--NV----WNLRRKIGMVFQNPDNQFVGATV 99 (277)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC-C--CCEEEECCE--ECCcC--CH----HHHhcceEEEEECHHHhhccCCH
Confidence 47899999999999999999999999985 2 456666652 22100 00 01124689999985445677899
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. ... ..+..+.++.+.+||+|+ .+|+|||||||+. +|+..+..+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l 179 (277)
T PRK13642 100 EDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEI 179 (277)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987543211 10 011 123455677778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 180 ~~~l~~l~~~~g~tiil~sH~~ 201 (277)
T PRK13642 180 MRVIHEIKEKYQLTVLSITHDL 201 (277)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999875 88777777765
No 129
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.2e-17 Score=167.46 Aligned_cols=146 Identities=15% Similarity=0.143 Sum_probs=105.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|..++ . +|.|.+++. ++... .... .+..+++++|++ .+++.+|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~~~~------~~~~i~~~~q~~-~~~~~~t 96 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYKP-T--GGTILLRGQ--HIEGLPGHQI------ARMGVVRTFQHV-RLFREMT 96 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcCC-C--cceEEECCE--ECCCCCHHHH------HhcCeEEeccCc-ccCCCCc
Confidence 47899999999999999999999999885 2 456666652 11100 0000 113478889873 5666789
Q ss_pred HHHHHHHHHhh----------------h-h--H--HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEE
Q 007851 253 VMEWVAAEEKY----------------K-Q--E--VQM-----KNILPAVADKFLVDQHADQ-----------RGASILC 295 (587)
Q Consensus 253 V~eni~~~~~~----------------~-~--~--~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~ 295 (587)
|.+|+.++... . . . ... ...+....++.+.+||+|+ .+|+||+
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 176 (255)
T PRK11300 97 VIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILM 176 (255)
T ss_pred HHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999875210 0 0 0 001 1124455677788999997 7999999
Q ss_pred EeCCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 296 FDEIQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 296 LDEPt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
||||++ +|+.....+.++|.++.++ |++||++||..
T Consensus 177 lDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~ 214 (255)
T PRK11300 177 LDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM 214 (255)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH
Confidence 999999 9999999999999999875 88887777763
No 130
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.73 E-value=2.7e-17 Score=164.21 Aligned_cols=143 Identities=17% Similarity=0.247 Sum_probs=105.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC---CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE---GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~---~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+||||||||||+++++|.++ + ..++|.+++. ++.. . ..++.+++++|+ ..+++.
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~---~~G~i~~~g~--~~~~---~------~~~~~i~~~~q~-~~~~~~ 95 (226)
T cd03234 31 ESGQVMAILGSSGSGKTTLLDAISGRVEGGGT---TSGQILFNGQ--PRKP---D------QFQKCVAYVRQD-DILLPG 95 (226)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCccCCCCC---CceEEEECCE--ECCh---H------HhcccEEEeCCC-CccCcC
Confidence 4789999999999999999999999987 4 2456776652 2211 0 113568999987 356677
Q ss_pred CcHHHHHHHHHhhhh-----HH----HHhc-c-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 251 SKVMEWVAAEEKYKQ-----EV----QMKN-I-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 251 ~tV~eni~~~~~~~~-----~~----~~~~-~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
+||.+|+.+...... .. .... . +..+.++.+.+||+|+ .+|++||+|||++ +|
T Consensus 96 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD 175 (226)
T cd03234 96 LTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175 (226)
T ss_pred CcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCC
Confidence 899999987543211 00 0111 1 2234455667899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.+++.++.+.|.++|++||..
T Consensus 176 ~~~~~~~~~~l~~~~~~~~tiii~sh~~ 203 (226)
T cd03234 176 SFTALNLVSTLSQLARRNRIVILTIHQP 203 (226)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 9999999999999987788777777764
No 131
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2e-17 Score=166.06 Aligned_cols=147 Identities=16% Similarity=0.145 Sum_probs=104.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ . +|.|.+++. ++...-... ..++.+++++|+. ..++..||
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p-~--~G~i~~~g~--~~~~~~~~~-----~~~~~i~~~~q~~-~~~~~~tv 97 (237)
T PRK11614 29 NQGEIVTLIGANGAGKTTLLGTLCGDPRA-T--SGRIVFDGK--DITDWQTAK-----IMREAVAIVPEGR-RVFSRMTV 97 (237)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC-C--CceEEECCE--ecCCCCHHH-----HHHhCEEEeccCc-ccCCCCcH
Confidence 47999999999999999999999999975 2 356666652 111100000 0124689999974 45666899
Q ss_pred HHHHHHHHhhhh--H--HHHhc------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E--VQMKN------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 254 ~eni~~~~~~~~--~--~~~~~------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
.+|+.+...... . ..... .+....+..+.+||+|+ .+|+||+||||+. +|+..+..+.
T Consensus 98 ~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~ 177 (237)
T PRK11614 98 EENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177 (237)
T ss_pred HHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHH
Confidence 999987532111 0 00111 13334456677899997 7999999999999 9999999999
Q ss_pred HHHHHHHhCCcEEEEecCCC
Q 007851 312 GIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 312 ~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++|.++.++|.+||++||..
T Consensus 178 ~~l~~~~~~~~tiii~sH~~ 197 (237)
T PRK11614 178 DTIEQLREQGMTIFLVEQNA 197 (237)
T ss_pred HHHHHHHHCCCEEEEEeCcH
Confidence 99999987788877777763
No 132
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=5.9e-18 Score=172.95 Aligned_cols=174 Identities=18% Similarity=0.170 Sum_probs=130.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
...|+.+.|+|-+|||||||++++.++++| +.| .|.+++- ++. +.+..++ ++.+++|||+ ..++
T Consensus 51 v~~GeIfViMGLSGSGKSTLvR~~NrLiep-t~G--~ilv~g~--di~~~~~~~Lr~~R------r~~~sMVFQ~-FaLl 118 (386)
T COG4175 51 VEEGEIFVIMGLSGSGKSTLVRLLNRLIEP-TRG--EILVDGK--DIAKLSAAELRELR------RKKISMVFQS-FALL 118 (386)
T ss_pred ecCCeEEEEEecCCCCHHHHHHHHhccCCC-CCc--eEEECCc--chhcCCHHHHHHHH------hhhhhhhhhh-hccc
Confidence 356899999999999999999999999987 344 4555542 332 2333443 3578999997 6899
Q ss_pred CCCcHHHHHHHHHhhhhHH--H---------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 249 FDSKVMEWVAAEEKYKQEV--Q---------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~--~---------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+.||.+|+.|++...+.. + ....|...+++++.+||||+ .+|+||++||+++ |||-
T Consensus 119 PhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPL 198 (386)
T COG4175 119 PHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPL 198 (386)
T ss_pred cchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChH
Confidence 9999999999998765421 1 11245678999999999996 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhh
Q 007851 306 AIVALSGIVSRLLST-GTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY 367 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~-G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~Dy 367 (587)
-+..+.+-|.+|.++ +.|||+.||...|.|--+ ..|.++ +.++||+++.+.+.
T Consensus 199 IR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG--------~rIaim-kdG~ivQ~Gtp~eI 252 (386)
T COG4175 199 IRTEMQDELLELQAKLKKTIVFITHDLDEALRIG--------DRIAIM-KDGEIVQVGTPEEI 252 (386)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc--------ceEEEe-cCCeEEEeCCHHHH
Confidence 998888888888765 668877778765654322 124444 67888888877544
No 133
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.1e-17 Score=167.94 Aligned_cols=146 Identities=21% Similarity=0.218 Sum_probs=104.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ .. |.|.+++. ++.. ... ....+.+++++|+. .+++.+|+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~-~~~~~~tv 93 (255)
T PRK11231 26 PTGKITALIGPNGCGKSTLLKCFARLLTP-QS--GTVFLGDK--PISM-LSS-----RQLARRLALLPQHH-LTPEGITV 93 (255)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC-CC--cEEEECCE--EhHH-CCH-----HHHhhheEEecccC-CCCCCccH
Confidence 47899999999999999999999999875 33 45666552 2211 000 01123579999974 35566899
Q ss_pred HHHHHHHHh----hh----hH--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEK----YK----QE--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~----~~----~~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.++.. .. .. .... ..+....+..+.+||+|+ .+|++|+||||++ +|+..
T Consensus 94 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 173 (255)
T PRK11231 94 RELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINH 173 (255)
T ss_pred HHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 999986421 00 00 0111 123455677788999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+.++|..+.++|.+||++||..
T Consensus 174 ~~~l~~~l~~l~~~~~tiii~tH~~ 198 (255)
T PRK11231 174 QVELMRLMRELNTQGKTVVTVLHDL 198 (255)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCH
Confidence 9999999999987788777777764
No 134
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.73 E-value=3.1e-17 Score=163.23 Aligned_cols=150 Identities=14% Similarity=0.177 Sum_probs=104.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhH--HHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM--LKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm--~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+|+||||||||+++|+|.+++ . .|.|.|++.. .++... ..... ....+.+++++|+. .+++.
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~--~G~i~~~~~g~~~~~~~~~~~~~~---~~~~~~i~~~~q~~-~~~~~ 104 (224)
T TIGR02324 32 NAGECVALSGPSGAGKSTLLKSLYANYLP-D--SGRILVRHEGAWVDLAQASPREVL---EVRRKTIGYVSQFL-RVIPR 104 (224)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CCeEEEecCCCccchhhcCHHHHH---HHHhcceEEEeccc-ccCCC
Confidence 47899999999999999999999999875 2 3566665211 122110 00000 00124589999974 56777
Q ss_pred CcHHHHHHHHHhhhh----H--HHHhcc-----HHH-HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 251 SKVMEWVAAEEKYKQ----E--VQMKNI-----LPA-VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 251 ~tV~eni~~~~~~~~----~--~~~~~~-----L~~-la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+||.+|+.+.....+ . ...... +.. +.+..+.+||+|+ .+|++|+||||+. +|+..
T Consensus 105 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~ 184 (224)
T TIGR02324 105 VSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAAN 184 (224)
T ss_pred ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 899999987543211 0 011111 122 3455678999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+.+++.++.++|.+||++||.
T Consensus 185 ~~~l~~~l~~~~~~g~tii~vsH~ 208 (224)
T TIGR02324 185 RQVVVELIAEAKARGAALIGIFHD 208 (224)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999999999998778887777776
No 135
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.73 E-value=2.4e-17 Score=163.41 Aligned_cols=143 Identities=18% Similarity=0.193 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|..++ ..|.|.+++. .+... ...+.+++++|. ..+++.+|+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~--~i~~~---------~~~~~i~~~~q~-~~~~~~~t~ 99 (214)
T PRK13543 35 DAGEALLVQGDNGAGKTTLLRVLAGLLHV---ESGQIQIDGK--TATRG---------DRSRFMAYLGHL-PGLKADLST 99 (214)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CCeeEEECCE--Eccch---------hhhhceEEeecC-cccccCCcH
Confidence 47899999999999999999999999885 2456777652 22110 012357899886 345666899
Q ss_pred HHHHHHHHhhhhH---HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQE---VQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 254 ~eni~~~~~~~~~---~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
.+|+.+.....+. ... ...+....+..+.+||+|+ .+|+||+||||+. +|+.....+.++
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~ 179 (214)
T PRK13543 100 LENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRM 179 (214)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9999775432211 001 1123344567778999997 7999999999999 999999999999
Q ss_pred HHHHHhCCcEEEEecCCC
Q 007851 314 VSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~~G~vvV~TSn~~ 331 (587)
+..+.++|.++|++||..
T Consensus 180 l~~~~~~~~tiii~sH~~ 197 (214)
T PRK13543 180 ISAHLRGGGAALVTTHGA 197 (214)
T ss_pred HHHHHhCCCEEEEEecCh
Confidence 999888888777777754
No 136
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.73 E-value=2.9e-17 Score=167.58 Aligned_cols=154 Identities=17% Similarity=0.130 Sum_probs=107.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++.....++|.|++. .+.... ............+++++|+. .+++.+|+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~--~~~~~~-~~~~~~~~~~~~i~~~~q~~-~~~~~~tv 103 (262)
T PRK09984 28 HHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGR--TVQREG-RLARDIRKSRANTGYIFQQF-NLVNRLSV 103 (262)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCE--eccccc-ccchhHHHHHhheEEEcccc-ccccCCcH
Confidence 478999999999999999999999998752112467887763 221100 00000001124589999974 45667899
Q ss_pred HHHHHHHHhh------------hh--HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 254 MEWVAAEEKY------------KQ--EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~------------~~--~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.+|+.++... .. ..... ..+....++.+.+||+|+ .+|+||+||||++ +
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 183 (262)
T PRK09984 104 LENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASL 183 (262)
T ss_pred HHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccC
Confidence 9999864310 00 00111 123445677778999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|+..+..+.++|..+.++ |.+||++||..
T Consensus 184 D~~~~~~l~~~l~~~~~~~g~tvii~tH~~ 213 (262)
T PRK09984 184 DPESARIVMDTLRDINQNDGITVVVTLHQV 213 (262)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999999999864 77777777764
No 137
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=2.1e-17 Score=169.18 Aligned_cols=146 Identities=19% Similarity=0.204 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ . +|.|.+++. ++.. ... ...++.+++++|+. ..++.+|+
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~-~~~-----~~~~~~i~~v~q~~-~~~~~~tv 102 (265)
T PRK10575 35 PAGKVTGLIGHNGSGKSTLLKMLGRHQPP-S--EGEILLDAQ--PLES-WSS-----KAFARKVAYLPQQL-PAAEGMTV 102 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC-C--CCEEEECCE--ehhh-CCH-----HHHhhheEEeccCC-CCCCCccH
Confidence 47899999999999999999999999875 2 356666652 2211 000 01124689999873 45677899
Q ss_pred HHHHHHHHh-h-------hhH--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEK-Y-------KQE--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~-~-------~~~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+... . ... .... ..+....++.+.+||||+ .+|+||+||||+. +|+..
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~ 182 (265)
T PRK10575 103 RELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAH 182 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 999986421 0 000 0111 123445667778999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.++|.++.+. |.+||++||..
T Consensus 183 ~~~~~~~l~~l~~~~~~tiii~sH~~ 208 (265)
T PRK10575 183 QVDVLALVHRLSQERGLTVIAVLHDI 208 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999765 77777777754
No 138
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=1.2e-17 Score=166.13 Aligned_cols=146 Identities=20% Similarity=0.191 Sum_probs=110.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||+|||||+++|.|.++| .+++|.|++- ++.. ..|+. .+..++..||. ..+|+++|
T Consensus 28 ~~Gei~~LIGPNGAGKTTlfNlitG~~~P---~~G~v~~~G~--~it~l~p~~i------ar~Gi~RTFQ~-~rlF~~lT 95 (250)
T COG0411 28 RPGEIVGLIGPNGAGKTTLFNLITGFYKP---SSGTVIFRGR--DITGLPPHRI------ARLGIARTFQI-TRLFPGLT 95 (250)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccccC---CCceEEECCc--ccCCCCHHHH------Hhccceeeccc-ccccCCCc
Confidence 57899999999999999999999999996 3567888773 3321 11121 12356667887 47888999
Q ss_pred HHHHHHHHHhhh--------------hHHH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeC
Q 007851 253 VMEWVAAEEKYK--------------QEVQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDE 298 (587)
Q Consensus 253 V~eni~~~~~~~--------------~~~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDE 298 (587)
|.||++.+.... ...+ .. ..|.+.+++.+++||+|+ .+|+||||||
T Consensus 96 VlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDE 175 (250)
T COG0411 96 VLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDE 175 (250)
T ss_pred HHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecC
Confidence 999998764311 0111 11 124567888889999996 7999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 299 IQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 299 Pt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|.+ +.+..+..|.+++.++.+. |++|++.-|++
T Consensus 176 PaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM 210 (250)
T COG0411 176 PAAGLNPEETEELAELIRELRDRGGVTILLIEHDM 210 (250)
T ss_pred ccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc
Confidence 999 9999999999999999985 67877777764
No 139
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=1.3e-17 Score=171.96 Aligned_cols=151 Identities=16% Similarity=0.171 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|.++| .+|.|.+++. ++..... .......++.++|++|+....++..||
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p---~~G~i~~~g~--~i~~~~~--~~~~~~~~~~i~~~~q~~~~~~~~~tv 103 (280)
T PRK13649 31 EDGSYTAFIGHTGSGKSTIMQLLNGLHVP---TQGSVRVDDT--LITSTSK--NKDIKQIRKKVGLVFQFPESQLFEETV 103 (280)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--Ecccccc--ccCHHHHHhheEEEeeChhhhhccccH
Confidence 47899999999999999999999999875 2456666552 2210000 000001124589999974323445799
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.+.....+ .. .... .+. ...++.+.+||+|+ .+|+||+||||++ +|+..+..
T Consensus 104 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~ 183 (280)
T PRK13649 104 LKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKE 183 (280)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 999987543211 10 0111 222 34566678999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|..+.+.|.+||++||..
T Consensus 184 l~~~l~~~~~~~~tiiivsH~~ 205 (280)
T PRK13649 184 LMTLFKKLHQSGMTIVLVTHLM 205 (280)
T ss_pred HHHHHHHHHHCCCEEEEEeccH
Confidence 9999999987788777777763
No 140
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.72 E-value=1.3e-17 Score=167.36 Aligned_cols=144 Identities=13% Similarity=0.108 Sum_probs=101.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ . +|.|.+++. ++.. ... ...++.+++++|++ .+++.||
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~--~~~~~tv 92 (237)
T cd03252 26 KPGEVVGIVGRSGSGKSTLTKLIQRFYVP-E--NGRVLVDGH--DLAL-ADP-----AWLRRQVGVVLQEN--VLFNRSI 92 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC-C--CCEEEECCe--ehHh-cCH-----HHHhhcEEEEcCCc--hhccchH
Confidence 47899999999999999999999999975 2 456777652 2211 000 01124589999974 3346799
Q ss_pred HHHHHHHHhhhhH---HH--Hhcc-----------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQE---VQ--MKNI-----------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~---~~--~~~~-----------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.+....... .. .... +...++..+.+||||| .+|++|+||||++ +|+.
T Consensus 93 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (237)
T cd03252 93 RDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172 (237)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 9999864321100 00 0011 1122345567999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.++|..+. +|.+||++||..
T Consensus 173 ~~~~l~~~l~~~~-~~~tiii~sH~~ 197 (237)
T cd03252 173 SEHAIMRNMHDIC-AGRTVIIIAHRL 197 (237)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeCCH
Confidence 9999999999986 477777777764
No 141
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.6e-17 Score=161.91 Aligned_cols=135 Identities=18% Similarity=0.202 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++.....+.|.+++. ++.. ... ...+.+++++|+ ...++.+||
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~--~~~~-~~~------~~~~~i~~~~q~-~~~~~~~tv 100 (202)
T cd03233 31 KPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGI--PYKE-FAE------KYPGEIIYVSEE-DVHFPTLTV 100 (202)
T ss_pred CCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCE--ECcc-chh------hhcceEEEEecc-cccCCCCcH
Confidence 578999999999999999999999998731013456766653 2211 000 113468999987 356667899
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhC-
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLST- 320 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~- 320 (587)
.+|+.+..... .+..+.+||+|+ .+|+||+||||+. +|+..+..+.+++.++.++
T Consensus 101 ~~~l~~~~~~~------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~ 168 (202)
T cd03233 101 RETLDFALRCK------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVL 168 (202)
T ss_pred HHHHhhhhhhc------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhC
Confidence 99998754211 344556777775 7999999999999 9999999999999999775
Q ss_pred CcE-EEEecCC
Q 007851 321 GTV-LVATSNR 330 (587)
Q Consensus 321 G~v-vV~TSn~ 330 (587)
+.+ ||++||.
T Consensus 169 ~~t~ii~~~h~ 179 (202)
T cd03233 169 KTTTFVSLYQA 179 (202)
T ss_pred CCEEEEEEcCC
Confidence 554 5556664
No 142
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.72 E-value=4.2e-17 Score=165.43 Aligned_cols=152 Identities=16% Similarity=0.168 Sum_probs=106.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHH-------HHHhhhhhhcccceeeeeccCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHM-------HRLWKNQVAEKSLRSSISGWITN 246 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l-------~~~~~~~~~~~~~ig~v~q~~~~ 246 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|.+++. ++...- ..........++.+++++|+. .
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~-~ 97 (252)
T TIGR03005 24 AAGEKVALIGPSGSGKSTILRILMTLEPI---DEGQIQVEGE--QLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSF-N 97 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--EccccccccccccccchhHHHHHhhCeEEEecCc-c
Confidence 47899999999999999999999999875 2456766652 221000 000000001134689999973 5
Q ss_pred CCCCCcHHHHHHHHHhh-h---h-H--HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 247 LPFDSKVMEWVAAEEKY-K---Q-E--VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 247 ~~~~~tV~eni~~~~~~-~---~-~--~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
+++..|+.+|+.+.... . . . ..... .+....++.+.+||+|+ .+|++|+||||++ +
T Consensus 98 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~L 177 (252)
T TIGR03005 98 LFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSAL 177 (252)
T ss_pred cCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 66779999999874321 0 0 0 01111 23445667778999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|+..+..+.++|.++.++ |.+||++||..
T Consensus 178 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 207 (252)
T TIGR03005 178 DPELVGEVLNVIRRLASEHDLTMLLVTHEM 207 (252)
T ss_pred CHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 999999999999999875 88887777764
No 143
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.72 E-value=2.3e-17 Score=167.78 Aligned_cols=146 Identities=21% Similarity=0.203 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ . .|+|.+++. ++...... ...+.++|++|+. ..++.+||
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~--~G~i~~~g~--~~~~~~~~------~~~~~i~~~~q~~-~~~~~~tv 92 (256)
T TIGR03873 25 PPGSLTGLLGPNGSGKSTLLRLLAGALRP-D--AGTVDLAGV--DLHGLSRR------ARARRVALVEQDS-DTAVPLTV 92 (256)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC-C--CCEEEECCE--EcccCCHH------HHhhheEEecccC-ccCCCCCH
Confidence 47999999999999999999999999985 2 356666652 22110000 0123578999874 45667899
Q ss_pred HHHHHHHHh-h---h----hH-H-HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEK-Y---K----QE-V-QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~-~---~----~~-~-~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+... . . .. . ... ..+..+.++.+.+||+|+ .+|+||+||||+. +|+..
T Consensus 93 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~ 172 (256)
T TIGR03873 93 RDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRA 172 (256)
T ss_pred HHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 999976421 0 0 00 0 111 123455677778999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+.++|.++.++|.+||++||..
T Consensus 173 ~~~l~~~l~~~~~~~~tiii~sH~~ 197 (256)
T TIGR03873 173 QLETLALVRELAATGVTVVAALHDL 197 (256)
T ss_pred HHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999987788888787764
No 144
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.2e-17 Score=171.38 Aligned_cols=147 Identities=16% Similarity=0.108 Sum_probs=106.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|.+++ ..|.|++++. ++.. ... ...++.+++++|+....++..++
T Consensus 33 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~--~~~~-~~~-----~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 33 PKGQWTSIVGHNGSGKSTIAKLMIGIEKV---KSGEIFYNNQ--AITD-DNF-----EKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--ECCc-CCH-----HHHHhheeEEEeChHHhcccccH
Confidence 47899999999999999999999999975 2456777652 2211 000 01124689999975445677899
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+...... .. ... ..+....+..+.+||+|+ .+|+||+||||++ +|+..+..+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987643211 00 111 112345566778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+++.++.++ |.+||++||..
T Consensus 182 ~~~L~~~~~~~~~tiiivtH~~ 203 (269)
T PRK13648 182 LDLVRKVKSEHNITIISITHDL 203 (269)
T ss_pred HHHHHHHHHhcCCEEEEEecCc
Confidence 9999999764 77777777764
No 145
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.72 E-value=2.3e-17 Score=167.04 Aligned_cols=148 Identities=18% Similarity=0.125 Sum_probs=104.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++. ....|.|.+++. ++.. ... ...++.+++++|++ ..++.+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~--~i~~-~~~-----~~~~~~i~~v~q~~-~~~~~~ 97 (250)
T PRK14247 27 PDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ--DIFK-MDV-----IELRRRVQMVFQIP-NPIPNL 97 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCE--ECCc-CCH-----HHHhccEEEEeccC-ccCCCC
Confidence 478999999999999999999999998631 013567777763 2211 000 01124689999974 456789
Q ss_pred cHHHHHHHHHhhhh----HH----HHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 252 KVMEWVAAEEKYKQ----EV----QMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 252 tV~eni~~~~~~~~----~~----~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
||.+|+.+...... .. .....+ ....++.+.+||||+ .+|+||+||||++ +
T Consensus 98 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~L 177 (250)
T PRK14247 98 SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANL 177 (250)
T ss_pred cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 99999987543211 01 111111 123456678999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.++|.++.+ |.+||++||..
T Consensus 178 D~~~~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14247 178 DPENTAKIESLFLELKK-DMTIVLVTHFP 205 (250)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 99999999999999864 77777777764
No 146
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=5.8e-18 Score=170.50 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=116.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHH-HHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~-~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+...+|.|++|+|||||+++|+|+..| .+++|+.++... +..+.+ .....++++|||||+ ..+|+++||
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rP---deG~I~lngr~L~Ds~k~i-----~lp~~~RriGYVFQD-ARLFpH~tV 93 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRP---DEGRIELNGRVLVDAEKGI-----FLPPEKRRIGYVFQD-ARLFPHYTV 93 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCc---cccEEEECCEEeecccCCc-----ccChhhheeeeEeec-cccccceEE
Confidence 3467889999999999999999999986 467888887522 111111 112345789999998 578899999
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSR 316 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~ 316 (587)
+.|+.|+.......+. .-.+..+.++++..||||+ ..|++|++|||.+ +|......+.-.+++
T Consensus 94 rgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylER 173 (352)
T COG4148 94 RGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLER 173 (352)
T ss_pred ecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHH
Confidence 9999998765422221 1246788999999999997 6999999999998 999999999999999
Q ss_pred HHhC-CcEEEEecCCC
Q 007851 317 LLST-GTVLVATSNRA 331 (587)
Q Consensus 317 L~~~-G~vvV~TSn~~ 331 (587)
|.++ .+.|+..||..
T Consensus 174 L~~e~~IPIlYVSHS~ 189 (352)
T COG4148 174 LRDEINIPILYVSHSL 189 (352)
T ss_pred HHHhcCCCEEEEecCH
Confidence 9987 67788888864
No 147
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.72 E-value=3.4e-17 Score=160.09 Aligned_cols=135 Identities=16% Similarity=0.205 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc--CCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l--~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.||||||||||+++|+|.. ++ ..++|.+++. ++... . ..+.+++++|+. .+++.+
T Consensus 33 ~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~---~~G~i~~~g~--~~~~~--~-------~~~~i~~~~q~~-~~~~~~ 97 (194)
T cd03213 33 KPGELTAIMGPSGAGKSTLLNALAGRRTGLG---VSGEVLINGR--PLDKR--S-------FRKIIGYVPQDD-ILHPTL 97 (194)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCE--eCchH--h-------hhheEEEccCcc-cCCCCC
Confidence 478999999999999999999999998 64 3467777652 22210 1 124588999873 456678
Q ss_pred cHHHHHHHHHhhhhHH-HHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 252 KVMEWVAAEEKYKQEV-QMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 252 tV~eni~~~~~~~~~~-~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
|+.+|+.+........ .... .-.+|..++ .+|++|+||||+. +|+..+..+.++|.++.++|.++|++||
T Consensus 98 t~~~~i~~~~~~~~LS~G~~q-rv~laral~-------~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh 169 (194)
T cd03213 98 TVRETLMFAAKLRGLSGGERK-RVSIALELV-------SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIH 169 (194)
T ss_pred cHHHHHHHHHHhccCCHHHHH-HHHHHHHHH-------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 9999997653210000 0000 012333333 6899999999999 9999999999999999877888888888
Q ss_pred CC
Q 007851 330 RA 331 (587)
Q Consensus 330 ~~ 331 (587)
..
T Consensus 170 ~~ 171 (194)
T cd03213 170 QP 171 (194)
T ss_pred Cc
Confidence 65
No 148
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.72 E-value=3.3e-17 Score=164.99 Aligned_cols=146 Identities=14% Similarity=0.090 Sum_probs=104.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|.+++ . .|.|.+++. ++...-... ..+..+++++|+ ..+++.+||
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p-~--~G~i~~~g~--~~~~~~~~~-----~~~~~i~~~~q~-~~~~~~~tv 94 (242)
T TIGR03411 26 DPGELRVIIGPNGAGKTTMMDVITGKTRP-D--EGSVLFGGT--DLTGLPEHQ-----IARAGIGRKFQK-PTVFENLTV 94 (242)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CCeEEECCe--ecCCCCHHH-----HHhcCeeEeccc-cccCCCCCH
Confidence 47899999999999999999999999875 2 356766652 211000000 012358999997 356677899
Q ss_pred HHHHHHHHhhh------------h--HHHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 254 MEWVAAEEKYK------------Q--EVQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~~------------~--~~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.+|+.+..... . ...... .+....++.+.+||+|+ .+|++|+||||++ +
T Consensus 95 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~L 174 (242)
T TIGR03411 95 FENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174 (242)
T ss_pred HHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCC
Confidence 99998753210 0 001111 22344566778999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.+++..+.+ +.+||++||..
T Consensus 175 D~~~~~~l~~~l~~~~~-~~tii~~sH~~ 202 (242)
T TIGR03411 175 TDEETEKTAELLKSLAG-KHSVVVVEHDM 202 (242)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEECCH
Confidence 99999999999999866 67777777763
No 149
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.72 E-value=2.2e-18 Score=166.43 Aligned_cols=146 Identities=16% Similarity=0.206 Sum_probs=113.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.|+|.||||+||||.+.++.|++++ ..++|.+++. ++.. .+|+ + .+..+||++|. ...|-.+|
T Consensus 28 ~~GEiVGLLGPNGAGKTT~Fymi~Glv~~---d~G~i~ld~~--diT~lPm~~-R-----ArlGigYLpQE-~SIFr~Lt 95 (243)
T COG1137 28 NSGEIVGLLGPNGAGKTTTFYMIVGLVRP---DSGKILLDDE--DITKLPMHK-R-----ARLGIGYLPQE-ASIFRKLT 95 (243)
T ss_pred cCCcEEEEECCCCCCceeEEEEEEEEEec---CCceEEECCc--ccccCChHH-H-----hhcCccccccc-chHhhcCc
Confidence 57999999999999999999999999986 3456766663 3332 1222 1 23568999997 56778899
Q ss_pred HHHHHHHHHhhhhH--H--H----H-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYKQE--V--Q----M-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~~~--~--~----~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
|.+||...+..... . + . +..+..+.+....+||||+ .+|+.|+||||++ .||-..
T Consensus 96 V~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV 175 (243)
T COG1137 96 VEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAV 175 (243)
T ss_pred HHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhH
Confidence 99999887654331 1 1 1 1234567788888999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.+++..|.++|+-|++|-|..
T Consensus 176 ~dIq~iI~~L~~rgiGvLITDHNV 199 (243)
T COG1137 176 IDIQRIIKHLKDRGIGVLITDHNV 199 (243)
T ss_pred HHHHHHHHHHHhCCceEEEccccH
Confidence 999999999999999777777754
No 150
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.72 E-value=2.4e-17 Score=168.16 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ .. |.|.+++. ++...... ...+.+++++|+. .+++.+||
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p-~~--G~i~~~g~--~~~~~~~~------~~~~~i~~~~q~~-~~~~~~tv 93 (258)
T PRK13548 26 RPGEVVAILGPNGAGKSTLLRALSGELSP-DS--GEVRLNGR--PLADWSPA------ELARRRAVLPQHS-SLSFPFTV 93 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--CEEEECCE--EcccCCHH------HhhhheEEEccCC-cCCCCCCH
Confidence 47899999999999999999999999875 33 55666552 22110000 1124579999973 45567899
Q ss_pred HHHHHHHHhhhh------HHHHh-----ccHHHHHhHhhhhhcccC----------C-------CccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEEKYKQ------EVQMK-----NILPAVADKFLVDQHADQ----------R-------GASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~~~~~------~~~~~-----~~L~~la~~l~~~LSgGq----------~-------~p~LL~LDEPt~-lD~ 304 (587)
.+|+.+...... ..... ..+....++.+.+||||+ . +|++|+||||++ +|+
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~ 173 (258)
T PRK13548 94 EEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173 (258)
T ss_pred HHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCH
Confidence 999987532110 01111 123455677788999996 3 899999999999 999
Q ss_pred HHHHHHHHHHHHHH-hCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLL-STGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~-~~G~vvV~TSn~~ 331 (587)
..+..+.++|.++. +.|.+||++||..
T Consensus 174 ~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 174 AHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 99999999999998 6688887777764
No 151
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.72 E-value=2.4e-17 Score=165.03 Aligned_cols=148 Identities=15% Similarity=0.086 Sum_probs=104.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc-ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~-~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 251 (587)
.+|+.++|.||||||||||+++|+|.+++. ....+.|.+++. ++... .. ..+.+++++|++. .+...+
T Consensus 10 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~--~~~~~--~~------~~~~i~~~~q~~~~~~~~~~ 79 (230)
T TIGR02770 10 KRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGR--PLLPL--SI------RGRHIATIMQNPRTAFNPLF 79 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCE--echhh--hh------hhheeEEEecCchhhcCccc
Confidence 478999999999999999999999998751 002456766652 22111 11 1246899999853 244558
Q ss_pred cHHHHHHHHHhhhh--HH----HHhc-----cHH---HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYKQ--EV----QMKN-----ILP---AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~~--~~----~~~~-----~L~---~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+.+|+.+.....+ .. .... .+. .+.++.+.+||+|+ .+|+||+||||++ +|+.
T Consensus 80 t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~ 159 (230)
T TIGR02770 80 TMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVV 159 (230)
T ss_pred CHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHH
Confidence 99999876543211 00 0111 122 34566678999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
....+.+++.++.++ |.+||++||..
T Consensus 160 ~~~~l~~~l~~~~~~~~~tiii~sH~~ 186 (230)
T TIGR02770 160 NQARVLKLLRELRQLFGTGILLITHDL 186 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999999874 77887887764
No 152
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.9e-17 Score=171.50 Aligned_cols=152 Identities=12% Similarity=0.105 Sum_probs=104.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . +|.|.+++. ++........ .....++.+++++|+....++..|+
T Consensus 35 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~i~~~~~~~~-~~~~~~~~i~~v~q~~~~~~~~~tv 108 (289)
T PRK13645 35 KKNKVTCVIGTTGSGKSTMIQLTNGLIIS-E--TGQTIVGDY--AIPANLKKIK-EVKRLRKEIGLVFQFPEYQLFQETI 108 (289)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CceEEECCE--Eccccccccc-cHHHHhccEEEEEeCcchhhhhhHH
Confidence 47899999999999999999999999975 3 355666552 1110000000 0001124689999975333445799
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.+.....+ .. .... .+ ....++.+.+||+|| .+|+||+||||++ +|+..+..
T Consensus 109 ~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 188 (289)
T PRK13645 109 EKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEED 188 (289)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHH
Confidence 999987643211 10 0111 12 234566778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.++|.++.+. |.+||++||..
T Consensus 189 l~~~l~~~~~~~~~tiiiisH~~ 211 (289)
T PRK13645 189 FINLFERLNKEYKKRIIMVTHNM 211 (289)
T ss_pred HHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999764 88888888864
No 153
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.72 E-value=6.6e-17 Score=164.08 Aligned_cols=133 Identities=15% Similarity=0.200 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .+.|.+++ ..+++++|.. ...+.+||
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p-~--~G~i~~~g--------------------~~i~~~~q~~-~~~~~~tv 78 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVLKP-D--EGDIEIEL--------------------DTVSYKPQYI-KADYEGTV 78 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcC-C--CCeEEECC--------------------ceEEEecccc-cCCCCCCH
Confidence 47899999999999999999999999986 2 34565543 1367888863 34567899
Q ss_pred HHHHHHHHhhhhH-----HH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQE-----VQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~~~~-----~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+|+.+....... .+ ....+....++.+.+||||+ .+|++|+||||+. +|+..+..+.++|
T Consensus 79 ~e~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l 158 (246)
T cd03237 79 RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158 (246)
T ss_pred HHHHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 9998754321110 00 11123455677788999997 7999999999999 9999999999999
Q ss_pred HHHHhC-CcEEEEecCC
Q 007851 315 SRLLST-GTVLVATSNR 330 (587)
Q Consensus 315 ~~L~~~-G~vvV~TSn~ 330 (587)
.++.++ |.+||++||.
T Consensus 159 ~~~~~~~~~tiiivsHd 175 (246)
T cd03237 159 RRFAENNEKTAFVVEHD 175 (246)
T ss_pred HHHHHhcCCEEEEEeCC
Confidence 999764 7777777775
No 154
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=2e-17 Score=166.89 Aligned_cols=145 Identities=12% Similarity=0.145 Sum_probs=103.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . +|.|.+++. ++..... ...++.+++++|+.. ++..|+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~i~~~~~------~~~~~~i~~~~q~~~--~~~~tv 93 (241)
T PRK14250 27 EGGAIYTIVGPSGAGKSTLIKLINRLIDP-T--EGSILIDGV--DIKTIDV------IDLRRKIGMVFQQPH--LFEGTV 93 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--EhhhcCh------HHhhhcEEEEecCch--hchhhH
Confidence 47899999999999999999999999875 2 456666652 2221000 011246899999742 334799
Q ss_pred HHHHHHHHhhhhH--HHHh-----ccH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--VQMK-----NIL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~~~-----~~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
.+|+.+....... .... ..+ ..+.++.+.+||+|+ .+|++|+||||++ +|+..+..+.++
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 173 (241)
T PRK14250 94 KDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173 (241)
T ss_pred HHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9999865322111 1111 122 235567778999997 7999999999999 999999999999
Q ss_pred HHHHHhC-CcEEEEecCCC
Q 007851 314 VSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~~-G~vvV~TSn~~ 331 (587)
|..+.++ |.+||++||..
T Consensus 174 l~~~~~~~g~tii~~sH~~ 192 (241)
T PRK14250 174 IVKLKNKMNLTVIWITHNM 192 (241)
T ss_pred HHHHHHhCCCEEEEEeccH
Confidence 9999774 77777777754
No 155
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.8e-17 Score=179.29 Aligned_cols=150 Identities=18% Similarity=0.178 Sum_probs=111.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.++|+|.||+|||||||+|+|.++| . .+.|.+++-...... ........|..|+|+ .++.+++|
T Consensus 31 v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p-~--~G~I~~~G~~~~~~s-------p~~A~~~GI~~V~QE-l~L~p~Ls 99 (500)
T COG1129 31 VRPGEVHALLGENGAGKSTLMKILSGVYPP-D--SGEILIDGKPVAFSS-------PRDALAAGIATVHQE-LSLVPNLS 99 (500)
T ss_pred EeCceEEEEecCCCCCHHHHHHHHhCcccC-C--CceEEECCEEccCCC-------HHHHHhCCcEEEeec-hhccCCcc
Confidence 357999999999999999999999999986 2 456766653111111 011123578999998 57899999
Q ss_pred HHHHHHHHHhhhh------H----HHHhccHHHH-----HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQ------E----VQMKNILPAV-----ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~------~----~~~~~~L~~l-----a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|.|||.++..... . ......+..+ .+..+.+||.|+ .+++||+|||||+ |+..
T Consensus 100 VaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~ 179 (500)
T COG1129 100 VAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179 (500)
T ss_pred HHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 9999977543211 0 1111222222 566677888885 6999999999998 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
++..|++++++|.++|+.+|+.||+..|
T Consensus 180 E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~E 207 (500)
T COG1129 180 ETERLFDLIRRLKAQGVAIIYISHRLDE 207 (500)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEcCcHHH
Confidence 9999999999999999999988998644
No 156
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.4e-17 Score=166.74 Aligned_cols=146 Identities=19% Similarity=0.188 Sum_probs=105.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ ..|.|++++. ++.. ... ......++|++|++ .+++..|+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~--~~~~-~~~-----~~~~~~i~~v~q~~-~~~~~~tv 98 (265)
T PRK10253 31 PDGHFTAIIGPNGCGKSTLLRTLSRLMTP---AHGHVWLDGE--HIQH-YAS-----KEVARRIGLLAQNA-TTPGDITV 98 (265)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC---CCcEEEECCE--Ehhh-CCH-----HHHhhheEEeeccC-cCCCCCcH
Confidence 47899999999999999999999999875 2456777652 2211 000 00123589999974 45567899
Q ss_pred HHHHHHHHh-h-------hhH--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEK-Y-------KQE--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~-~-------~~~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+... . ... .... ..+....++.+.+||+|+ .+|++|+||||+. +|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~ 178 (265)
T PRK10253 99 QELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISH 178 (265)
T ss_pred HHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 999976411 0 000 0111 123455677788999997 7999999999998 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.++|..+.+. |.+||++||..
T Consensus 179 ~~~l~~~L~~l~~~~~~tiii~tH~~ 204 (265)
T PRK10253 179 QIDLLELLSELNREKGYTLAAVLHDL 204 (265)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999774 77777777753
No 157
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.7e-17 Score=159.89 Aligned_cols=136 Identities=17% Similarity=0.173 Sum_probs=95.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.+++ ..++|.+++. ++.. ... ......+.+++++|++ .+++..|+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~~-~~~---~~~~~~~~i~~~~q~~-~~~~~~t~ 93 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLEEP---DSGSILIDGE--DLTD-LED---ELPPLRRRIGMVFQDF-ALFPHLTV 93 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--Eccc-cch---hHHHHhhcEEEEecCC-ccCCCCCH
Confidence 47899999999999999999999999875 2456766652 2211 000 0001124689999874 45667899
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+|+.+.. ..+.. . .-.++..+. .+|++|+||||+. +|+..+..+.+++.++.++ |.++|++||..
T Consensus 94 ~~~l~~~l-S~G~~---q-r~~la~al~-------~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 161 (178)
T cd03229 94 LENIALGL-SGGQQ---Q-RVALARALA-------MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161 (178)
T ss_pred HHheeecC-CHHHH---H-HHHHHHHHH-------CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99986431 01111 0 112455554 6899999999999 9999999999999999887 77777777763
No 158
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=7.9e-17 Score=157.20 Aligned_cols=126 Identities=17% Similarity=0.186 Sum_probs=95.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..+.+ ...+.|.+++. ++. .. .++.+++++|++ ..++.+|+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~-~~~G~i~~~g~--~~~---~~-------~~~~i~~~~q~~-~~~~~~tv 96 (192)
T cd03232 31 KPGTLTALMGESGAGKTTLLDVLAGRKTAG-VITGEILINGR--PLD---KN-------FQRSTGYVEQQD-VHSPNLTV 96 (192)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCcCC-CcceEEEECCE--ehH---HH-------hhhceEEecccC-ccccCCcH
Confidence 468999999999999999999999976311 13467777652 221 11 123578998863 45667899
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTG 321 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G 321 (587)
.+|+.+..... +||+|+ .+|++|++|||++ +|+..+..+.+++.++.+.|
T Consensus 97 ~~~l~~~~~~~------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~ 158 (192)
T cd03232 97 REALRFSALLR------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSG 158 (192)
T ss_pred HHHHHHHHHHh------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcC
Confidence 99998643210 455554 6999999999999 99999999999999988778
Q ss_pred cEEEEecCCC
Q 007851 322 TVLVATSNRA 331 (587)
Q Consensus 322 ~vvV~TSn~~ 331 (587)
.+||++||..
T Consensus 159 ~tiiivtH~~ 168 (192)
T cd03232 159 QAILCTIHQP 168 (192)
T ss_pred CEEEEEEcCC
Confidence 8887777764
No 159
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.71 E-value=6.7e-17 Score=164.49 Aligned_cols=152 Identities=16% Similarity=0.144 Sum_probs=104.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH------HH-HHhhhhhhcccceeeeeccCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH------MH-RLWKNQVAEKSLRSSISGWITN 246 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~------l~-~~~~~~~~~~~~ig~v~q~~~~ 246 (587)
.+|+.++|+|+||||||||+++|+|.+++ ..|.|.+++. .+... +. .-.......++.++|++|+. .
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~-~ 102 (257)
T PRK10619 29 NAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGSIVVNGQ--TINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF-N 102 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCE--EcccccccccccccccchHHHHHhhceEEEecCc-c
Confidence 57899999999999999999999999975 2456766652 11100 00 00000011134689999973 4
Q ss_pred CCCCCcHHHHHHHHHh-hhh--H----HHHhcc-----HHHH-HhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 247 LPFDSKVMEWVAAEEK-YKQ--E----VQMKNI-----LPAV-ADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 247 ~~~~~tV~eni~~~~~-~~~--~----~~~~~~-----L~~l-a~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+++.+|+.+|+.+... ... . ...... +... .++.+.+||+|+ .+|+||+||||+.
T Consensus 103 l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~ 182 (257)
T PRK10619 103 LWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSA 182 (257)
T ss_pred cCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 5566899999976431 111 0 111111 2222 356678999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.....+.++|.++.+.|.+||++||..
T Consensus 183 LD~~~~~~l~~~l~~l~~~g~tiiivsH~~ 212 (257)
T PRK10619 183 LDPELVGEVLRIMQQLAEEGKTMVVVTHEM 212 (257)
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999999999987788877777763
No 160
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=1.5e-17 Score=166.48 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ .+|+|.+++. .+.. ... ...++.+++++|++ .++..|+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~--~~~~~tv 92 (234)
T cd03251 26 PAGETVALVGPSGSGKSTLVNLIPRFYDV---DSGRILIDGH--DVRD-YTL-----ASLRRQIGLVSQDV--FLFNDTV 92 (234)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccC---CCCEEEECCE--Ehhh-CCH-----HHHHhhEEEeCCCC--eeccccH
Confidence 47899999999999999999999999975 2456777652 2211 000 01124589999874 2345799
Q ss_pred HHHHHHHHhhhhHHH-----HhccHHH-----------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQ-----MKNILPA-----------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~-----~~~~L~~-----------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.+......... ....+.. ..+..+.+||+|+ .+|++|+||||+. +|+.
T Consensus 93 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~ 172 (234)
T cd03251 93 AENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172 (234)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 999987532111100 0001111 2234466899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.+++..+.+ |.+||++||..
T Consensus 173 ~~~~l~~~l~~~~~-~~tii~~sh~~ 197 (234)
T cd03251 173 SERLVQAALERLMK-NRTTFVIAHRL 197 (234)
T ss_pred HHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 99999999999864 77777777754
No 161
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.71 E-value=8.2e-17 Score=164.75 Aligned_cols=150 Identities=15% Similarity=0.181 Sum_probs=105.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|.+++ . +|.|.+++. ++...-.. .....++.+++++|++. .+++.+|
T Consensus 35 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~i~~~~~~---~~~~~~~~i~~v~q~~~~~~~~~~t 106 (265)
T TIGR02769 35 EEGETVGLLGRSGCGKSTLARLLLGLEKP-A--QGTVSFRGQ--DLYQLDRK---QRRAFRRDVQLVFQDSPSAVNPRMT 106 (265)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--EccccCHH---HHHHHhhceEEEecChhhhcCCCCC
Confidence 57999999999999999999999999975 2 456666652 22110000 00011246899999753 3556789
Q ss_pred HHHHHHHHHhhh----h-H--HHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYK----Q-E--VQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~----~-~--~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
|.+|+.+..... . . ..... .+ ..++++.+.+||+|+ .+|+||+||||++ +|+..+
T Consensus 107 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~ 186 (265)
T TIGR02769 107 VRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQ 186 (265)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 999997653211 1 0 11111 12 234566778999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 308 VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+.++|.++.+. |.+||++||..
T Consensus 187 ~~l~~~l~~~~~~~g~tiiivsH~~ 211 (265)
T TIGR02769 187 AVILELLRKLQQAFGTAYLFITHDL 211 (265)
T ss_pred HHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 9999999999875 78877777763
No 162
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.4e-17 Score=163.37 Aligned_cols=144 Identities=19% Similarity=0.159 Sum_probs=105.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|..++ .+|.|.+++. ++.. .. ...+.+++++|++ ..+..+|+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~---~~G~i~~~g~--~~~~----~~----~~~~~i~~~~q~~-~~~~~~t~ 89 (232)
T cd03300 24 KEGEFFTLLGPSGCGKTTLLRLIAGFETP---TSGEILLDGK--DITN----LP----PHKRPVNTVFQNY-ALFPHLTV 89 (232)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--EcCc----CC----hhhcceEEEeccc-ccCCCCcH
Confidence 47899999999999999999999999985 2356666542 2211 00 0124689999973 45557899
Q ss_pred HHHHHHHHhhhh---H---HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---E---VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~---~---~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . .... ..+....++.+.+||+|+ .+|++|+||||+. +|+..+..+
T Consensus 90 ~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l 169 (232)
T cd03300 90 FENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM 169 (232)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999986543211 0 0111 123445677778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 170 ~~~l~~~~~~~~~tiii~sh~~ 191 (232)
T cd03300 170 QLELKRLQKELGITFVFVTHDQ 191 (232)
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999875 77887777764
No 163
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.71 E-value=6.1e-17 Score=161.60 Aligned_cols=142 Identities=20% Similarity=0.190 Sum_probs=103.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCC-CCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNL-PFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~-~~~~t 252 (587)
.+|+.++|+|+||||||||+++++|..++ ..++|.+++. ++. . ..+.++|++|++... .+..|
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~---~~G~i~~~g~--~~~----~-------~~~~i~~v~q~~~~~~~~~~t 67 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPP---AKGTVKVAGA--SPG----K-------GWRHIGYVPQRHEFAWDFPIS 67 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCc--cch----H-------hhCcEEEecccccccCCCCcc
Confidence 36899999999999999999999999875 2456777652 221 1 124689999975332 24579
Q ss_pred HHHHHHHHHh-----h--h-hH--HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEK-----Y--K-QE--VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~-----~--~-~~--~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+.+|+.++.. . . .. ..... .+....+..+.+||+|+ .+|++|+||||+. +|+.
T Consensus 68 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~ 147 (223)
T TIGR03771 68 VAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMP 147 (223)
T ss_pred HHHHHHhccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 9999976421 0 0 00 11111 12334566678999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.+++.++.++|.++|++||..
T Consensus 148 ~~~~l~~~l~~~~~~~~tvii~sH~~ 173 (223)
T TIGR03771 148 TQELLTELFIELAGAGTAILMTTHDL 173 (223)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 99999999999987788877777764
No 164
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.71 E-value=5.5e-17 Score=164.08 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=103.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCccc--ceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~--~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+|||||||||++|+|.++|... .+|+|.+++. ++...... ....++.++|++|+. .+++ .
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~--~~~~~~~~----~~~~~~~i~~v~q~~-~~~~-~ 96 (247)
T TIGR00972 25 PKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ--DIYDKKID----VVELRRRVGMVFQKP-NPFP-M 96 (247)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCE--Eccccccc----hHHHHhheEEEecCc-ccCC-C
Confidence 57899999999999999999999999975100 1567777653 22110000 001124689999974 3444 9
Q ss_pred cHHHHHHHHHhhhh---HH----HHhc-----cHH----HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKN-----ILP----AVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~-----~L~----~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. .... .+. ...++.+.+||||+ .+|++|+||||++ +|
T Consensus 97 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD 176 (247)
T TIGR00972 97 SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALD 176 (247)
T ss_pred CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999987643221 00 1111 122 44566678999997 7999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|..+.+. .+||++||..
T Consensus 177 ~~~~~~l~~~l~~~~~~-~tiiivsH~~ 203 (247)
T TIGR00972 177 PIATGKIEELIQELKKK-YTIVIVTHNM 203 (247)
T ss_pred HHHHHHHHHHHHHHHhc-CeEEEEecCH
Confidence 99999999999998764 6666666653
No 165
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=3.3e-17 Score=163.52 Aligned_cols=144 Identities=15% Similarity=0.221 Sum_probs=99.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|||||||||||++|+|.+++ . +|.|.+++. ++.. ... ...++.++|++|++ .++..|+
T Consensus 27 ~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~--~~~~~tv 93 (229)
T cd03254 27 KPGETVAIVGPTGAGKTTLINLLMRFYDP-Q--KGQILIDGI--DIRD-ISR-----KSLRSMIGVVLQDT--FLFSGTI 93 (229)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC-C--CCEEEECCE--eHHH-cCH-----HHHhhhEEEecCCc--hhhhhHH
Confidence 47899999999999999999999999975 2 456766652 2211 000 01124589999974 3344599
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.+.......... ...+.... +..+.+||+|+ .+|++|+||||+. +|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~ 173 (229)
T cd03254 94 MENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTE 173 (229)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 9999865321111100 01122222 33357899997 7999999999998 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.+++..+. +|.+||++||..
T Consensus 174 ~~~~l~~~l~~~~-~~~tii~~sh~~ 198 (229)
T cd03254 174 TEKLIQEALEKLM-KGRTSIIIAHRL 198 (229)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 9999999999985 577777777754
No 166
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.71 E-value=6.7e-17 Score=155.06 Aligned_cols=130 Identities=20% Similarity=0.255 Sum_probs=92.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++|+|..++ . .+.|.+++. ++.. ... ...++.+++++|++ .+ +..|+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~--~G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~-~~-~~~tv 92 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLLRP-T--SGRVRLDGA--DISQ-WDP-----NELGDHVGYLPQDD-EL-FSGSI 92 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC-C--CCeEEECCE--Eccc-CCH-----HHHHhheEEECCCC-cc-ccCcH
Confidence 47899999999999999999999999985 2 356666652 2211 000 01124679999974 33 34699
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+.-+ +.. . .-.++..++ .+|++|+||||+. +|+..+..+.+++..+.++|.+||++||..
T Consensus 93 ~~~lLS~----G~~---q-rv~la~al~-------~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 156 (173)
T cd03246 93 AENILSG----GQR---Q-RLGLARALY-------GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156 (173)
T ss_pred HHHCcCH----HHH---H-HHHHHHHHh-------cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9997111 111 1 123455554 6899999999998 999999999999999987788877777764
No 167
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.71 E-value=4e-17 Score=163.91 Aligned_cols=144 Identities=17% Similarity=0.204 Sum_probs=99.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ .. |.|.+++. ++.. ... ....+.++|++|+. .++..||
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~--G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~--~~~~~tv 93 (238)
T cd03249 27 PPGKTVALVGSSGCGKSTVVSLLERFYDP-TS--GEILLDGV--DIRD-LNL-----RWLRSQIGLVSQEP--VLFDGTI 93 (238)
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHhccCCC-CC--CEEEECCE--ehhh-cCH-----HHHHhhEEEECCch--hhhhhhH
Confidence 47899999999999999999999999975 33 45666652 2211 000 01123589999874 2334799
Q ss_pred HHHHHHHHhhhhHHH-----HhccHHHH-----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQ-----MKNILPAV-----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~-----~~~~L~~l-----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.+......... ....+..+ ++..+.+||+|+ .+|++|+||||++ +|+.
T Consensus 94 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~ 173 (238)
T cd03249 94 AENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAE 173 (238)
T ss_pred HHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 999986532111110 00112222 233356899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.++|..+. +|.+||++||..
T Consensus 174 ~~~~l~~~l~~~~-~g~~vi~~sh~~ 198 (238)
T cd03249 174 SEKLVQEALDRAM-KGRTTIVIAHRL 198 (238)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEeCCH
Confidence 9999999999986 787777777754
No 168
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.71 E-value=6e-17 Score=155.98 Aligned_cols=131 Identities=19% Similarity=0.238 Sum_probs=90.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|..++ . .+.|.+++. ++...... .++.+++++|++ .++..|+
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~-------~~~~i~~~~q~~--~~~~~tv 91 (178)
T cd03247 26 KQGEKIALLGRSGSGKSTLLQLLTGDLKP-Q--QGEITLDGV--PVSDLEKA-------LSSLISVLNQRP--YLFDTTL 91 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC-C--CCEEEECCE--EHHHHHHH-------HHhhEEEEccCC--eeecccH
Confidence 47899999999999999999999999875 2 356666652 22211011 124679999864 3345799
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++|+...+ ..+.. . .-.+++.++ .+|++|+||||+. +|+..+..+.+++.++. +|.+||++||..
T Consensus 92 ~~~i~~~L-S~G~~---q-rv~laral~-------~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~ 157 (178)
T cd03247 92 RNNLGRRF-SGGER---Q-RLALARILL-------QDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHL 157 (178)
T ss_pred HHhhcccC-CHHHH---H-HHHHHHHHh-------cCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence 99871110 01110 0 122455554 6899999999999 99999999999999985 577777777753
No 169
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.71 E-value=4.5e-17 Score=162.31 Aligned_cols=144 Identities=15% Similarity=0.102 Sum_probs=100.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .+.|.+++- ++...... ...+.+++++|+. .++..|+
T Consensus 38 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~--~G~i~~~g~--~~~~~~~~------~~~~~i~~~~q~~--~l~~~tv 104 (226)
T cd03248 38 HPGEVTALVGPSGSGKSTVVALLENFYQP-Q--GGQVLLDGK--PISQYEHK------YLHSKVSLVGQEP--VLFARSL 104 (226)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC-C--CcEEEECCC--chHHcCHH------HHHhhEEEEeccc--HHHhhhH
Confidence 57899999999999999999999999975 2 356777652 22110000 1124689999974 2345799
Q ss_pred HHHHHHHHhhhh-----HH-H---Hhc-------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQ-----EV-Q---MKN-------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~-----~~-~---~~~-------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.++..... .. . ... .+....+..+.+||+|+ .+|++|+||||+. +|+.
T Consensus 105 ~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~ 184 (226)
T cd03248 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184 (226)
T ss_pred HHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 999976432110 00 0 000 12334555677899997 7999999999998 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.+++..+.+ +.+||++||..
T Consensus 185 ~~~~l~~~l~~~~~-~~tii~~sh~~ 209 (226)
T cd03248 185 SEQQVQQALYDWPE-RRTVLVIAHRL 209 (226)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEECCH
Confidence 99999999999865 56776666653
No 170
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=9e-17 Score=169.62 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=107.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|++++ . .|.|.|++. ++...-.. +....++.++++||++. .+.+.++
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p-~--~G~i~~~g~--~l~~~~~~---~~~~~r~~i~~v~Q~~~~~l~p~~~ 110 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIETP-T--GGELYYQGQ--DLLKADPE---AQKLLRQKIQIVFQNPYGSLNPRKK 110 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCCCC-C--CcEEEECCE--EcCcCCHH---HHHHHhCCEEEEEcCchhhcCCccC
Confidence 57899999999999999999999999975 2 456766652 22110000 00111246899999864 5667789
Q ss_pred HHHHHHHHHhhh---hH----HHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYK---QE----VQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~---~~----~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
+.+++....... .. ..... .+ ...+++++.+||||| .+|+||++|||++ ||+..+
T Consensus 111 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~ 190 (327)
T PRK11308 111 VGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQ 190 (327)
T ss_pred HHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHH
Confidence 999987654321 01 11111 12 245677888999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 308 VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+.++|.++.++ |.+||++||..
T Consensus 191 ~~i~~lL~~l~~~~g~til~iTHdl 215 (327)
T PRK11308 191 AQVLNLMMDLQQELGLSYVFISHDL 215 (327)
T ss_pred HHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999999875 88777777754
No 171
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.70 E-value=4e-17 Score=164.27 Aligned_cols=144 Identities=17% Similarity=0.187 Sum_probs=106.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|.+++ ..++|.+++. ++.. . ....+.+++++|++ .+++..|+
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~---~~G~i~i~g~--~~~~----~----~~~~~~i~~~~q~~-~~~~~~t~ 89 (237)
T TIGR00968 24 PTGSLVALLGPSGSGKSTLLRIIAGLEQP---DSGRIRLNGQ--DATR----V----HARDRKIGFVFQHY-ALFKHLTV 89 (237)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--EcCc----C----ChhhcCEEEEecCh-hhccCCcH
Confidence 47899999999999999999999999875 2456666652 2211 0 01124689999873 45556899
Q ss_pred HHHHHHHHhhhh------HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ------EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~------~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ ..... ..+..+.++.+.+||+|+ .+|++||||||+. +|+.....+
T Consensus 90 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 169 (237)
T TIGR00968 90 RDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169 (237)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 999987543211 01111 123445677778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|.++.++ |.+||++||..
T Consensus 170 ~~~l~~~~~~~~~tvli~sH~~ 191 (237)
T TIGR00968 170 RSWLRKLHDEVHVTTVFVTHDQ 191 (237)
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999998876 77888887764
No 172
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=5.8e-17 Score=164.56 Aligned_cols=149 Identities=9% Similarity=0.070 Sum_probs=102.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++.. ..+|.|.+++. ++...-.. ....++.++|++|+.. .+ .+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~i~~~~~~----~~~~~~~i~~v~q~~~-~~-~~ 102 (254)
T PRK14273 31 LKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGK--NIYSNNFD----ILELRRKIGMVFQTPN-PF-LM 102 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCE--eccccccc----HHHHhhceEEEeeccc-cc-cC
Confidence 5799999999999999999999999987510 12466766552 22110000 0011346899999743 33 58
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.++....+ .. ..... +....+..+.+||||| .+|+||+||||++ +|
T Consensus 103 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 182 (254)
T PRK14273 103 SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALD 182 (254)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccC
Confidence 99999987643211 00 01111 1233456677999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|..+. +|.+||++||..
T Consensus 183 ~~~~~~l~~~l~~~~-~~~tvii~sH~~ 209 (254)
T PRK14273 183 PISTGKIEELIINLK-ESYTIIIVTHNM 209 (254)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 999999999999995 467777777754
No 173
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=7.5e-17 Score=162.12 Aligned_cols=144 Identities=17% Similarity=0.155 Sum_probs=105.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++++|.+++ .. |.|.+++. ++.. .. ...+.+++++|++ .+++.+|+
T Consensus 23 ~~Ge~~~i~G~nG~GKStLl~~l~G~~~p-~~--G~v~i~g~--~~~~----~~----~~~~~i~~~~q~~-~~~~~~t~ 88 (235)
T cd03299 23 ERGDYFVILGPTGSGKSVLLETIAGFIKP-DS--GKILLNGK--DITN----LP----PEKRDISYVPQNY-ALFPHMTV 88 (235)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCcCC-Cc--eEEEECCE--EcCc----CC----hhHcCEEEEeecC-ccCCCccH
Confidence 47899999999999999999999999885 23 45555542 2211 00 0124689999973 45667999
Q ss_pred HHHHHHHHhhhh----H--HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----E--VQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~----~--~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ . ... ...+...+++.+.+||+|+ .+|++|+||||++ +|+..+..+
T Consensus 89 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l 168 (235)
T cd03299 89 YKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL 168 (235)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH
Confidence 999987543211 0 011 1223456677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++++.+..+ |.+||++||..
T Consensus 169 ~~~l~~~~~~~~~tili~tH~~ 190 (235)
T cd03299 169 REELKKIRKEFGVTVLHVTHDF 190 (235)
T ss_pred HHHHHHHHHhcCCEEEEEecCH
Confidence 9999998765 88877777764
No 174
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.70 E-value=1.6e-16 Score=158.05 Aligned_cols=149 Identities=15% Similarity=0.080 Sum_probs=106.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|.+++ . .|.|.+++. .+.. .... .....++.+++++|++ .+++.+|+
T Consensus 29 ~~G~~~~I~G~nGsGKStLl~~l~G~~~~-~--~G~i~~~g~--~~~~-~~~~--~~~~~~~~i~~~~q~~-~~~~~~t~ 99 (220)
T TIGR02982 29 NPGEIVILTGPSGSGKTTLLTLIGGLRSV-Q--EGSLKVLGQ--ELYG-ASEK--ELVQLRRNIGYIFQAH-NLLGFLTA 99 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CeEEEECCE--EhHh-cCHh--HHHHHHhheEEEcCCh-hhcCCCCH
Confidence 46899999999999999999999999875 2 356666542 2211 0000 0001235689999974 45566899
Q ss_pred HHHHHHHHhhhh---HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYKQ---EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~~---~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.+...... .. ... ..+....++.+.+||+|+ .+|++|+||||++ +|+..++.
T Consensus 100 ~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~ 179 (220)
T TIGR02982 100 RQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRD 179 (220)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 999987643221 10 111 123455667778999996 7999999999999 99999999
Q ss_pred HHHHHHHHHh-CCcEEEEecCCC
Q 007851 310 LSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+.++|.++.+ .|.+||++||..
T Consensus 180 l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 180 VVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999986 478888888863
No 175
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.70 E-value=1.8e-16 Score=167.49 Aligned_cols=150 Identities=17% Similarity=0.127 Sum_probs=108.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCC-CCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWIT-NLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~-~~~ 248 (587)
.+|+.++|+|+||||||||+++|+|++++.....|+|.|++. ++. ..+.+. ..+.++++||++. .+.
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~--~i~~~~~~~~~~~------r~~~i~~v~Q~~~~~l~ 111 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR--EILNLPEKELNKL------RAEQISMIFQDPMTSLN 111 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE--ECCcCCHHHHHHH------hcCCEEEEEcCchhhcC
Confidence 578999999999999999999999999752012567777763 221 111111 1247899999864 567
Q ss_pred CCCcHHHHHHHHHhhhh---HH----HHhccH--------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 249 FDSKVMEWVAAEEKYKQ---EV----QMKNIL--------PAVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~---~~----~~~~~L--------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+.+++.+++........ .. .....+ ...+++.+.+||||| .+|+||++|||++
T Consensus 112 p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~ 191 (330)
T PRK09473 112 PYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTA 191 (330)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcc
Confidence 77999999876543221 11 111111 123466788999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
||+..+..+.++|..+.++ |.++|++||..
T Consensus 192 LD~~~~~~i~~lL~~l~~~~g~til~iTHdl 222 (330)
T PRK09473 192 LDVTVQAQIMTLLNELKREFNTAIIMITHDL 222 (330)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEECCH
Confidence 9999999999999999875 88777777764
No 176
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.70 E-value=3.9e-17 Score=172.19 Aligned_cols=137 Identities=18% Similarity=0.154 Sum_probs=101.2
Q ss_pred EEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHHHHH
Q 007851 181 LYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAE 260 (587)
Q Consensus 181 L~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~~~ 260 (587)
|+||||||||||+++|+|..++ .+|.|.+++. ++.. . ....+.++|+||++ .+++.+||.+|+.++
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p---~~G~I~i~g~--~i~~----~----~~~~~~i~~v~q~~-~l~~~~tv~enl~~~ 66 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQP---DSGSIMLDGE--DVTN----V----PPHLRHINMVFQSY-ALFPHMTVEENVAFG 66 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCC---CceEEEECCE--ECCC----C----CHHHCCEEEEecCc-cccCCCcHHHHHHHH
Confidence 5899999999999999999985 2466777652 1110 0 01124689999974 567789999999987
Q ss_pred Hhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHH
Q 007851 261 EKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRL 317 (587)
Q Consensus 261 ~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L 317 (587)
....+ .. .... .+..+.++.+.+||||| .+|++|+||||++ +|+..+..+.++|.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 67 LKMRKVPRAEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred HhhcCCCHHHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 54321 11 1111 22345677788999997 7999999999999 9999999999999999
Q ss_pred HhC-CcEEEEecCCC
Q 007851 318 LST-GTVLVATSNRA 331 (587)
Q Consensus 318 ~~~-G~vvV~TSn~~ 331 (587)
.++ |.++|++||..
T Consensus 147 ~~~~g~tiiivTHd~ 161 (325)
T TIGR01187 147 QEQLGITFVFVTHDQ 161 (325)
T ss_pred HHhcCCEEEEEeCCH
Confidence 765 77777777754
No 177
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.70 E-value=5.2e-17 Score=162.23 Aligned_cols=145 Identities=14% Similarity=0.152 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ . .|.|.+++. ++...-.. .....+++++|++. ++..|+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~~~~------~~~~~i~~~~q~~~--l~~~tv 97 (225)
T PRK10247 31 RAGEFKLITGPSGCGKSTLLKIVASLISP-T--SGTLLFEGE--DISTLKPE------IYRQQVSYCAQTPT--LFGDTV 97 (225)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC-C--CCeEEECCE--EcCcCCHH------HHHhccEEEecccc--cccccH
Confidence 47899999999999999999999999875 3 345666542 11100000 01246789999742 334699
Q ss_pred HHHHHHHHhhhh----HHHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----EVQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 254 ~eni~~~~~~~~----~~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
.+|+.+...... ...... .+ ..+.++.+.+||+|+ .+|++|+||||+. +|+.....+.
T Consensus 98 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~ 177 (225)
T PRK10247 98 YDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVN 177 (225)
T ss_pred HHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 999987533211 111111 12 234566778999997 7999999999999 9999999999
Q ss_pred HHHHHHHhC-CcEEEEecCCC
Q 007851 312 GIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 312 ~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
++|.++.++ |.+||++||..
T Consensus 178 ~~l~~~~~~~~~tvii~sh~~ 198 (225)
T PRK10247 178 EIIHRYVREQNIAVLWVTHDK 198 (225)
T ss_pred HHHHHHHHhcCCEEEEEECCh
Confidence 999998764 77777777753
No 178
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.70 E-value=6.2e-17 Score=160.55 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ . .+.|.+++. .+.. ... ...++.+++++|++. ++ ..|+
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~i~G~~~~-~--~G~i~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~~-~~-~~tv 94 (220)
T cd03245 28 RAGEKVAIIGRVGSGKSTLLKLLAGLYKP-T--SGSVLLDGT--DIRQ-LDP-----ADLRRNIGYVPQDVT-LF-YGTL 94 (220)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC-C--CCeEEECCE--EhHH-CCH-----HHHHhhEEEeCCCCc-cc-cchH
Confidence 47899999999999999999999999875 2 456777652 2211 000 001246899999743 33 4699
Q ss_pred HHHHHHHHhhhhHHH-----HhccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQ-----MKNILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~-----~~~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.+......... ....+....+..+ .+||||| .+|++|+||||+. +|+.
T Consensus 95 ~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~ 174 (220)
T cd03245 95 RDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMN 174 (220)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 999976432111111 1112334444433 5899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.+++.++.+. .+||++||..
T Consensus 175 ~~~~l~~~l~~~~~~-~tii~~sH~~ 199 (220)
T cd03245 175 SEERLKERLRQLLGD-KTLIIITHRP 199 (220)
T ss_pred HHHHHHHHHHHhcCC-CEEEEEeCCH
Confidence 999999999998764 6676666653
No 179
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6.1e-17 Score=162.26 Aligned_cols=144 Identities=13% Similarity=0.188 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|..++ .+|.|.+++. ++.. ... ...++.++|++|++ .++..|+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~v~~~g~--~~~~-~~~-----~~~~~~i~~~~q~~--~~~~~tv 91 (236)
T cd03253 25 PAGKKVAIVGPSGSGKSTILRLLFRFYDV---SSGSILIDGQ--DIRE-VTL-----DSLRRAIGVVPQDT--VLFNDTI 91 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCEEEECCE--Ehhh-CCH-----HHHHhhEEEECCCC--hhhcchH
Confidence 47899999999999999999999999875 2456766652 2211 000 01124579999874 3446799
Q ss_pred HHHHHHHHhhhhHHH-----HhccHHH-----------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQ-----MKNILPA-----------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~-----~~~~L~~-----------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.+......... ....+.. ..++.+.+||+|+ .+|++|+||||+. +|+.
T Consensus 92 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~ 171 (236)
T cd03253 92 GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTH 171 (236)
T ss_pred HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 999987532111000 0011111 2233456899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.++|..+.+ |.+||++||..
T Consensus 172 ~~~~l~~~l~~~~~-~~tiii~sh~~ 196 (236)
T cd03253 172 TEREIQAALRDVSK-GRTTIVIAHRL 196 (236)
T ss_pred HHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 99999999999876 88777777764
No 180
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=1.5e-16 Score=168.10 Aligned_cols=153 Identities=15% Similarity=0.113 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc-cceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCC-CCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITN-LPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~-~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~-~~~~ 250 (587)
.+|+.++|+|+||||||||+++|+|+++++. ...|.|.|++. ++... ....+ ....+.++++||++.. +.+.
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~--~i~~~~~~~~~---~~~~~~i~~v~Q~~~~~l~p~ 105 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI--DLLRLSPRERR---KLVGHNVSMIFQEPQSCLDPS 105 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE--ECCcCCHHHHH---HHhCCCEEEEecCcchhcCcc
Confidence 5789999999999999999999999986310 13467777652 22110 00000 0112468999998643 5667
Q ss_pred CcHHHHHHHHHhh---h-----h--H--HHHhcc-----H---HHHHhHhhhhhcccC-----------CCccEEEEeCC
Q 007851 251 SKVMEWVAAEEKY---K-----Q--E--VQMKNI-----L---PAVADKFLVDQHADQ-----------RGASILCFDEI 299 (587)
Q Consensus 251 ~tV~eni~~~~~~---~-----~--~--~~~~~~-----L---~~la~~l~~~LSgGq-----------~~p~LL~LDEP 299 (587)
+||.+++...... . . . ...... + ..++++.+.+||||| .+|+||++|||
T Consensus 106 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEP 185 (330)
T PRK15093 106 ERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEP 185 (330)
T ss_pred ccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 8999999753221 0 0 0 111111 2 134567788999997 79999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 300 QT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 300 t~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
++ ||+..+..+.++|.++.++ |.+||++||..
T Consensus 186 ts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl 219 (330)
T PRK15093 186 TNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL 219 (330)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 99 9999999999999999875 88777777764
No 181
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.1e-16 Score=153.34 Aligned_cols=140 Identities=17% Similarity=0.235 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh-----HHHHHHHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-----MLKINEHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f-----m~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.+|+.++|.||||+|||||+++++|++.| ..++|.+.+- ....+..++.+ .++..+-
T Consensus 26 ~~Ge~~~i~G~NG~GKTtLLRilaGLl~p---~~G~v~~~~~~i~~~~~~~~~~l~yL---------------GH~~giK 87 (209)
T COG4133 26 NAGEALQITGPNGAGKTTLLRILAGLLRP---DAGEVYWQGEPIQNVRESYHQALLYL---------------GHQPGIK 87 (209)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcccCC---CCCeEEecCCCCccchhhHHHHHHHh---------------hcccccc
Confidence 57999999999999999999999999986 2456666532 11122222221 2235667
Q ss_pred CCCcHHHHHHHHHhhhhH---HHH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 249 FDSKVMEWVAAEEKYKQE---VQM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~---~~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
..+||.||+.|...+.+. ... ...+..+.+..+.+||.|| ..+++.+||||++ +|.....
T Consensus 88 ~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 88 TELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred chhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 789999999998876553 111 1234455677788999997 6889999999998 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+|..-..+|.+||+|||.+
T Consensus 168 ~l~~l~~~H~~~GGiVllttHq~ 190 (209)
T COG4133 168 LLTALMAAHAAQGGIVLLTTHQP 190 (209)
T ss_pred HHHHHHHHHhcCCCEEEEecCCc
Confidence 99999999999988888888864
No 182
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.69 E-value=4.2e-17 Score=181.30 Aligned_cols=146 Identities=16% Similarity=0.167 Sum_probs=105.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|||||||||||++|+|.++| . .|.|.+++. ++... .... .++.+++++|+. .+++.+|
T Consensus 28 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~--~G~i~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~~~~~~t 95 (501)
T PRK10762 28 YPGRVMALVGENGAGKSTMMKVLTGIYTR-D--AGSILYLGK--EVTFNGPKSS------QEAGIGIIHQEL-NLIPQLT 95 (501)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ECCCCCHHHH------HhCCEEEEEcch-hccCCCc
Confidence 47899999999999999999999999975 2 456666552 11100 0000 124689999974 5677899
Q ss_pred HHHHHHHHHhhh------hHH----HHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYK------QEV----QMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~------~~~----~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|.+|+.++.... ... ..... +....++.+.+||||| .+|+||+||||++ +|+.
T Consensus 96 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 175 (501)
T PRK10762 96 IAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDT 175 (501)
T ss_pred HHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHH
Confidence 999998753211 011 11111 2223566678999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.+++..+.+.|.+||++||..
T Consensus 176 ~~~~l~~~l~~l~~~~~tvii~sHd~ 201 (501)
T PRK10762 176 ETESLFRVIRELKSQGRGIVYISHRL 201 (501)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 99999999999987787777777764
No 183
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=9.3e-17 Score=163.62 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=101.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+||||||||+++|+|..++. ....|.|.+++. .+... .. .....++.++|++|++. +++ +
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~--~i~~~--~~--~~~~~~~~i~~v~q~~~-~~~-~ 107 (258)
T PRK14268 36 PKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE--DIYEP--DV--DVVELRKNVGMVFQKPN-PFP-M 107 (258)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCE--Ecccc--cc--hHHHHhhhEEEEecCCc-cCc-c
Confidence 478999999999999999999999998641 012466776652 22110 00 00011246899999743 334 8
Q ss_pred cHHHHHHHHHhhhh--HH----HHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 252 KVMEWVAAEEKYKQ--EV----QMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 252 tV~eni~~~~~~~~--~~----~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|+.+|+.+.....+ .. .....+ ....++.+.+||+|+ .+|+||+||||++ +|+
T Consensus 108 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~ 187 (258)
T PRK14268 108 SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187 (258)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCH
Confidence 99999987643211 00 011111 223455677999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+..+.++|+++.+ |.+||++||..
T Consensus 188 ~~~~~l~~~l~~l~~-~~tiiivsH~~ 213 (258)
T PRK14268 188 ISTARIEDLIMNLKK-DYTIVIVTHNM 213 (258)
T ss_pred HHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 999999999999864 67777777753
No 184
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.5e-16 Score=161.32 Aligned_cols=149 Identities=15% Similarity=0.163 Sum_probs=103.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+||||||||||+++++|.+++.. ...|.|.+++. ++.. .... ...+..+++++|++ .+++.
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~--~i~~~~~~~-----~~~~~~i~~~~q~~-~~~~~ 99 (253)
T PRK14267 28 PQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGR--NIYSPDVDP-----IEVRREVGMVFQYP-NPFPH 99 (253)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE--EccccccCh-----HHHhhceeEEecCC-ccCCC
Confidence 4789999999999999999999999987510 12467777652 2210 0000 01124689999974 45667
Q ss_pred CcHHHHHHHHHhhhh----HH----HHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 251 SKVMEWVAAEEKYKQ----EV----QMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 251 ~tV~eni~~~~~~~~----~~----~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+||.+|+.+...... .. .....+ ....++.+.+||+|+ .+|+||+||||++
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~ 179 (253)
T PRK14267 100 LTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTAN 179 (253)
T ss_pred CcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 899999987543211 00 011111 123455678999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+..+..+.++|.++.+ +.+||++||..
T Consensus 180 LD~~~~~~l~~~l~~~~~-~~tiii~sH~~ 208 (253)
T PRK14267 180 IDPVGTAKIEELLFELKK-EYTIVLVTHSP 208 (253)
T ss_pred CCHHHHHHHHHHHHHHhh-CCEEEEEECCH
Confidence 999999999999999865 57777777753
No 185
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=1.1e-16 Score=152.82 Aligned_cols=121 Identities=17% Similarity=0.127 Sum_probs=86.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.+++ . .++|.+.+ .+.++|++|+.. ++..|+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~~-------------------~~~i~~~~q~~~--~~~~tv 80 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLWPW-G--SGRIGMPE-------------------GEDLLFLPQRPY--LPLGTL 80 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CceEEECC-------------------CceEEEECCCCc--cccccH
Confidence 47899999999999999999999999875 2 45665543 135799998742 456899
Q ss_pred HHHHHHH-H-hhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 254 MEWVAAE-E-KYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 254 ~eni~~~-~-~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+|+.+. . ...+. ... .-.+|+.+. .+|++|+||||++ +|+..+..+.+++.++ +.++|++||.
T Consensus 81 ~~nl~~~~~~~LS~G--~~~-rv~laral~-------~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~ 147 (166)
T cd03223 81 REQLIYPWDDVLSGG--EQQ-RLAFARLLL-------HKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHR 147 (166)
T ss_pred HHHhhccCCCCCCHH--HHH-HHHHHHHHH-------cCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCC
Confidence 9999752 0 00000 000 112333333 6899999999999 9999999999999876 4666666665
Q ss_pred C
Q 007851 331 A 331 (587)
Q Consensus 331 ~ 331 (587)
.
T Consensus 148 ~ 148 (166)
T cd03223 148 P 148 (166)
T ss_pred h
Confidence 3
No 186
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.2e-16 Score=161.97 Aligned_cols=149 Identities=13% Similarity=0.132 Sum_probs=100.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++++|..+ ++...+|.|.+++. ++... .. .....++.+++++|+. .++ ..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~i~~~--~~--~~~~~~~~i~~v~q~~-~~~-~~ 101 (253)
T PRK14242 30 EQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGE--NIYDP--HV--DVVELRRRVGMVFQKP-NPF-PK 101 (253)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCE--Ecccc--cc--CHHHHhhcEEEEecCC-CCC-cC
Confidence 4789999999999999999999999863 10013567777652 22110 00 0001124689999974 233 36
Q ss_pred cHHHHHHHHHhhhh---H----HHHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---E----VQMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~----~~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.+.....+ . ......+ ....++.+.+||||| .+|+||+||||++ +|
T Consensus 102 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD 181 (253)
T PRK14242 102 SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALD 181 (253)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999987643211 0 0111111 123455577899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|.++.+ |.+||++||..
T Consensus 182 ~~~~~~l~~~l~~~~~-~~tvii~tH~~ 208 (253)
T PRK14242 182 PIATQKIEELIHELKA-RYTIIIVTHNM 208 (253)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEEecH
Confidence 9999999999999854 67777777753
No 187
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=8.1e-17 Score=154.19 Aligned_cols=129 Identities=16% Similarity=0.212 Sum_probs=91.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|.+++ . .+++.+++. .+...... ..++.+++++|++ .+++.|+
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~~~-~--~G~i~~~g~--~~~~~~~~------~~~~~i~~~~~~~--~~~~~t~ 92 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLYDP-T--SGEILIDGV--DLRDLDLE------SLRKNIAYVPQDP--FLFSGTI 92 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC-C--CCEEEECCE--EhhhcCHH------HHHhhEEEEcCCc--hhccchH
Confidence 47899999999999999999999999985 2 356766652 22110000 1124579999875 3345799
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.||+.-+ +.. . .-.++..++ .+|++|+||||+. +|+..+..+.+++.++.+ +.+||++||..
T Consensus 93 ~e~lLS~----G~~---~-rl~la~al~-------~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~ 155 (171)
T cd03228 93 RENILSG----GQR---Q-RIAIARALL-------RDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRL 155 (171)
T ss_pred HHHhhCH----HHH---H-HHHHHHHHh-------cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCH
Confidence 9997111 111 1 112455554 6899999999998 999999999999999854 67777777764
No 188
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.69 E-value=1.1e-16 Score=160.97 Aligned_cols=147 Identities=13% Similarity=0.108 Sum_probs=100.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc--CCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l--~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|.. ++ . .|.|.+++. ++...-... .....+++++|+. ..++.+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~-~--~G~i~~~g~--~~~~~~~~~-----~~~~~i~~v~q~~-~~~~~~ 92 (243)
T TIGR01978 24 KKGEIHAIMGPNGSGKSTLSKTIAGHPSYEV-T--SGTILFKGQ--DLLELEPDE-----RARAGLFLAFQYP-EEIPGV 92 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC-C--cceEEECCE--ecCCCCHHH-----hhccceEeeeccc-cccCCc
Confidence 578999999999999999999999995 33 2 356666652 111000000 0113478888874 456778
Q ss_pred cHHHHHHHHHhhhh---------HH----HHhc-----cHH-HHHhHhhh-hhcccC-----------CCccEEEEeCCC
Q 007851 252 KVMEWVAAEEKYKQ---------EV----QMKN-----ILP-AVADKFLV-DQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 252 tV~eni~~~~~~~~---------~~----~~~~-----~L~-~la~~l~~-~LSgGq-----------~~p~LL~LDEPt 300 (587)
|+.+|+.+...... .. .... .+. ...++.+. +||+|+ .+|++|+||||+
T Consensus 93 t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt 172 (243)
T TIGR01978 93 SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEID 172 (243)
T ss_pred CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 99999976532110 00 0111 121 23445555 599997 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+ +|+..+..+.++|.++.++|.+||++||..
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~ 204 (243)
T TIGR01978 173 SGLDIDALKIVAEGINRLREPDRSFLIITHYQ 204 (243)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCcEEEEEEecH
Confidence 9 999999999999999987787777777753
No 189
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.69 E-value=5.7e-17 Score=180.71 Aligned_cols=146 Identities=18% Similarity=0.099 Sum_probs=106.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| ..|.|.+++. ++.. ..... ....++|++|+. .+++.+|
T Consensus 35 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~~~~~~t 102 (510)
T PRK15439 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPP---DSGTLEIGGN--PCARLTPAKA------HQLGIYLVPQEP-LLFPNLS 102 (510)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECCCCCHHHH------HhCCEEEEeccC-ccCCCCc
Confidence 47899999999999999999999999975 2456666552 1110 00010 123589999974 4677799
Q ss_pred HHHHHHHHHhhhhH--HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 253 VMEWVAAEEKYKQE--VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 253 V~eni~~~~~~~~~--~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
|.+|+.++...... ..... .+....++.+.+||||| .+|+||+||||++ +|+..+..+.++
T Consensus 103 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~ 182 (510)
T PRK15439 103 VKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR 182 (510)
T ss_pred HHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHH
Confidence 99999875421111 11111 12234567778999997 7999999999999 999999999999
Q ss_pred HHHHHhCCcEEEEecCCC
Q 007851 314 VSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~~G~vvV~TSn~~ 331 (587)
|.++.++|.+||++||..
T Consensus 183 l~~~~~~g~tiiivtHd~ 200 (510)
T PRK15439 183 IRELLAQGVGIVFISHKL 200 (510)
T ss_pred HHHHHHCCCEEEEEeCCH
Confidence 999988888777777764
No 190
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.69 E-value=1e-16 Score=164.23 Aligned_cols=147 Identities=16% Similarity=0.128 Sum_probs=103.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~~~t 252 (587)
.+|+.++|+|||||||||||++|+|.++| .. |.|.+++. ++...-.. ...+.+++++|++.. +.+.+|
T Consensus 37 ~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p-~~--G~i~~~g~--~~~~~~~~------~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 37 REGQTLAIIGENGSGKSTLAKMLAGMIEP-TS--GELLIDDH--PLHFGDYS------YRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCCCC-CC--CEEEECCE--ECCCCchh------hHhccEEEEecCchhhcCcchh
Confidence 57899999999999999999999999986 33 45655542 12100000 012358999997532 455679
Q ss_pred HHHHHHHHHhhhh---H----HHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYKQ---E----VQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~~---~----~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
+.+++.+...... . ..... .+ ....+..+.+||+|+ .+|+||+||||++ +|+...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 9999876543210 1 01111 12 234556678999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 308 VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+.++|.++.++ |.+||++||..
T Consensus 186 ~~l~~~l~~~~~~~g~tviivsH~~ 210 (267)
T PRK15112 186 SQLINLMLELQEKQGISYIYVTQHL 210 (267)
T ss_pred HHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 9999999999764 77777777753
No 191
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.69 E-value=1.3e-16 Score=164.22 Aligned_cols=149 Identities=15% Similarity=0.112 Sum_probs=104.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc-c----ceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-K----HRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~-~----~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.+|+.++|+||||||||||+++|+|.+++.. . ..+.|.+++. ++.. ... ....+.+++++|+.. .+
T Consensus 25 ~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~--~~~~-~~~-----~~~~~~~~~v~q~~~-~~ 95 (272)
T PRK13547 25 EPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGE--PLAA-IDA-----PRLARLRAVLPQAAQ-PA 95 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCE--Eccc-CCH-----HHHHhhcEEecccCC-CC
Confidence 4789999999999999999999999987520 0 0467777653 2211 000 001234689999743 35
Q ss_pred CCCcHHHHHHHHHhhh--------hH--HHHh-----ccHHHHHhHhhhhhcccC-----------C---------CccE
Q 007851 249 FDSKVMEWVAAEEKYK--------QE--VQMK-----NILPAVADKFLVDQHADQ-----------R---------GASI 293 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~--------~~--~~~~-----~~L~~la~~l~~~LSgGq-----------~---------~p~L 293 (587)
+.+|+.+|+.+..... .. .... ..+....++.+.+||+|+ . +|++
T Consensus 96 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~l 175 (272)
T PRK13547 96 FAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175 (272)
T ss_pred CCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCE
Confidence 5689999997642100 00 0011 123445666778999996 3 8999
Q ss_pred EEEeCCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 294 LCFDEIQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 294 L~LDEPt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|+||||+. +|+.....+.++|.++.++ |.+||++||..
T Consensus 176 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~ 215 (272)
T PRK13547 176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP 215 (272)
T ss_pred EEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 99999999 9999999999999999875 78877777763
No 192
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=2.4e-16 Score=166.38 Aligned_cols=150 Identities=15% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc-cceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCC-CC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWIT-NL 247 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~-~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~-~~ 247 (587)
.+|+.++|+|+||||||||+++|+|+++++. ...|+|.|++. ++. +...+. .++.++++||++. .+
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~--~i~~~~~~~~~~~------r~~~i~~v~Q~~~~~l 102 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ--DLQRISEKERRNL------VGAEVAMIFQDPMTSL 102 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE--ECCcCCHHHHHHH------hCCCEEEEecCchhhc
Confidence 5789999999999999999999999986310 13467777663 221 111111 1246899999864 46
Q ss_pred CCCCcHHHHHHHHHhhh-h--HH----HHhc-----cH---HHHHhHhhhhhcccC-----------CCccEEEEeCCCC
Q 007851 248 PFDSKVMEWVAAEEKYK-Q--EV----QMKN-----IL---PAVADKFLVDQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 248 ~~~~tV~eni~~~~~~~-~--~~----~~~~-----~L---~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
.+.+++.+++....... + .. .... .+ ...+++.+.+||||| .+|+||++|||++
T Consensus 103 ~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts 182 (326)
T PRK11022 103 NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTT 182 (326)
T ss_pred CCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 77789988886654321 0 11 1111 12 234677888999997 7999999999999
Q ss_pred -CCHHHHHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 302 -VDVFAIVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 302 -lD~~~a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+|+..+..+.++|..+.+ .|.++|++||..
T Consensus 183 ~LD~~~~~~il~lL~~l~~~~g~til~iTHdl 214 (326)
T PRK11022 183 ALDVTIQAQIIELLLELQQKENMALVLITHDL 214 (326)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 999999999999999987 487777777754
No 193
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.69 E-value=6.1e-17 Score=200.71 Aligned_cols=175 Identities=15% Similarity=0.086 Sum_probs=124.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ .. |.|.+++. ++...... .++.+|+++|. ..++..+||
T Consensus 1963 ~~GEi~gLLG~NGAGKTTLlkmL~Gll~p-ts--G~I~i~G~--~i~~~~~~-------~r~~IGy~pQ~-~~L~~~LTv 2029 (2272)
T TIGR01257 1963 RPGECFGLLGVNGAGKTTTFKMLTGDTTV-TS--GDATVAGK--SILTNISD-------VHQNMGYCPQF-DAIDDLLTG 2029 (2272)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHhCCCCC-Cc--cEEEECCE--ECcchHHH-------HhhhEEEEecc-ccCCCCCCH
Confidence 57899999999999999999999999986 33 55655552 22111111 12468999997 466778999
Q ss_pred HHHHHHHHhhhhH--HH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--VQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+||+.+....++. .. .. ..+...+++.+.+||||+ .+|+||+||||++ +|+..+..+
T Consensus 2030 ~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l 2109 (2272)
T TIGR01257 2030 REHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRML 2109 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 9999876544321 10 11 124556788889999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhhhhh
Q 007851 311 SGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRL 370 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~ 370 (587)
.+++.++.++|.+||+|||...+. +..+..|.+| ..++++..++..+.|.+
T Consensus 2110 ~~lL~~l~~~g~TIILtTH~mee~--------e~lcDrV~IL-~~G~i~~~Gs~q~Lk~~ 2160 (2272)
T TIGR01257 2110 WNTIVSIIREGRAVVLTSHSMEEC--------EALCTRLAIM-VKGAFQCLGTIQHLKSK 2160 (2272)
T ss_pred HHHHHHHHhCCCEEEEEeCCHHHH--------HHhCCEEEEE-ECCEEEEECCHHHHHHH
Confidence 999999988888888888875332 2222333333 35566666665555443
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.69 E-value=2e-16 Score=161.02 Aligned_cols=150 Identities=15% Similarity=0.108 Sum_probs=103.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++++|.++++. ..+++|.+++. ++... ... ....++.+++++|+. .+++.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~--~~~~~--~~~--~~~~~~~i~~~~q~~-~~~~~~ 100 (258)
T PRK14241 28 EPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE--DLYGP--GVD--PVAVRRTIGMVFQRP-NPFPTM 100 (258)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCE--ecccc--ccC--hHHHhcceEEEcccc-ccCCCC
Confidence 4789999999999999999999999986410 12567777652 22100 000 001134689999973 456678
Q ss_pred cHHHHHHHHHhhhh---HH----HHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.+.....+ .. .....+ ....+..+.+||+|+ .+|++|+||||++ +|
T Consensus 101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (258)
T PRK14241 101 SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALD 180 (258)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99999987543211 11 011111 223455667999997 7999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|.++.+ +.+||++||..
T Consensus 181 ~~~~~~l~~~l~~~~~-~~tviivsH~~ 207 (258)
T PRK14241 181 PISTLAIEDLINELKQ-DYTIVIVTHNM 207 (258)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 9999999999999854 56666666653
No 195
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.68 E-value=3e-16 Score=159.75 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=103.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHH-----HHHH-HHHHhhhhhhcccceeeeeccCC-C
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLK-----INEH-MHRLWKNQVAEKSLRSSISGWIT-N 246 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~-----v~~~-l~~~~~~~~~~~~~ig~v~q~~~-~ 246 (587)
.+|+.++|.|+||||||||+++|+|.++| . .|.|.+++- + +... ..... ......++|++|+.. .
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~i~~~~~~~~~---~~~~~~i~~v~q~~~~~ 101 (258)
T PRK11701 30 YPGEVLGIVGESGSGKTTLLNALSARLAP-D--AGEVHYRMR--DGQLRDLYALSEAERR---RLLRTEWGFVHQHPRDG 101 (258)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CCEEEECCc--cccccccccCCHHHHH---HHhhcceEEEeeCcccc
Confidence 47899999999999999999999999975 2 355666552 1 1110 00000 001246899999853 3
Q ss_pred CCCCCcHHHHHHHHHhhh-----hH--HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 247 LPFDSKVMEWVAAEEKYK-----QE--VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 247 ~~~~~tV~eni~~~~~~~-----~~--~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+.+..++.+|+.+..... .. ..... .+. ...++.+.+||+|| .+|+||+||||++
T Consensus 102 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~ 181 (258)
T PRK11701 102 LRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGG 181 (258)
T ss_pred cCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCccc
Confidence 556678999987543211 11 01111 121 24566678999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+|+.....+.+++..+.++ |.+||++||..
T Consensus 182 LD~~~~~~l~~~l~~~~~~~~~tii~isH~~ 212 (258)
T PRK11701 182 LDVSVQARLLDLLRGLVRELGLAVVIVTHDL 212 (258)
T ss_pred CCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 9999999999999998765 77777777754
No 196
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=162.46 Aligned_cols=148 Identities=12% Similarity=0.098 Sum_probs=101.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC--cccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG--IVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~--~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|.+++ .....|.|.+++. ++... .. .....++.+++++|++. + +..
T Consensus 37 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~--~~~~~--~~--~~~~~~~~i~~~~q~~~-~-~~~ 108 (260)
T PRK10744 37 AKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGE--NILTP--KQ--DIALLRAKVGMVFQKPT-P-FPM 108 (260)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCE--Ecccc--cc--chHHHhcceEEEecCCc-c-CcC
Confidence 57899999999999999999999999852 1013466777652 22100 00 00011346899999743 3 348
Q ss_pred cHHHHHHHHHhhh-h--H----HHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYK-Q--E----VQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~-~--~----~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+..... + . ...... +....++.+.+||+|| .+|+||+||||++ +|
T Consensus 109 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD 188 (260)
T PRK10744 109 SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALD 188 (260)
T ss_pred cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCC
Confidence 9999998754321 0 0 011111 1233456677899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+..+.+++.++.+ |.+||++||.
T Consensus 189 ~~~~~~l~~~L~~~~~-~~tiii~sH~ 214 (260)
T PRK10744 189 PISTGRIEELITELKQ-DYTVVIVTHN 214 (260)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEeCC
Confidence 9999999999999964 6666666665
No 197
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.68 E-value=4.6e-17 Score=181.33 Aligned_cols=149 Identities=19% Similarity=0.227 Sum_probs=105.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccC--CCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWI--TNLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~--~~~~~~ 250 (587)
..+|+.++|+||||||||||+++|+|.++| . .|.|.+++. ++... ... ...++.++|++|+. ..+++.
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p-~--~G~I~~~g~--~~~~~-~~~----~~~~~~i~~v~q~~~~~~~~~~ 355 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKR-A--GGEIRLNGK--DISPR-SPL----DAVKKGMAYITESRRDNGFFPN 355 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcC-C--CCeEEECCE--ECCCC-CHH----HHHHCCcEEccCccccCCCcCC
Confidence 357899999999999999999999999975 2 356666552 11100 000 00124689999974 356778
Q ss_pred CcHHHHHHHHHhh------------hh-H--HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeC
Q 007851 251 SKVMEWVAAEEKY------------KQ-E--VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDE 298 (587)
Q Consensus 251 ~tV~eni~~~~~~------------~~-~--~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDE 298 (587)
+||.+|+.++... .. . ..... .+. ..+++.+.+||||| .+|+||+|||
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDE 435 (510)
T PRK09700 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435 (510)
T ss_pred CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999999764210 00 0 01111 122 33566778999997 7999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 299 IQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 299 Pt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|++ +|+.....+.++|..+.++|.+||++||..
T Consensus 436 Pt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~ 469 (510)
T PRK09700 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSEL 469 (510)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 999 999999999999999988888777777764
No 198
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.68 E-value=3.2e-16 Score=172.14 Aligned_cols=150 Identities=17% Similarity=0.168 Sum_probs=113.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 251 (587)
..+|+.++|+|++|||||||+++++|+++| ..+.|.|.+.-.++. ..+....++.+-++||++. .+.|.+
T Consensus 314 l~~GE~lglVGeSGsGKSTlar~i~gL~~P---~~G~i~~~g~~~~~~------~~~~~~~r~~~QmvFQdp~~SLnPr~ 384 (539)
T COG1123 314 LREGETLGLVGESGSGKSTLARILAGLLPP---SSGSIIFDGQDLDLT------GGELRRLRRRIQMVFQDPYSSLNPRM 384 (539)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEEeCcccccc------cchhhhhhhheEEEEeCcccccCccc
Confidence 357999999999999999999999999986 346777766321111 0111122356789999974 578889
Q ss_pred cHHHHHHHHHhhhhH---HH----HhccH------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 252 KVMEWVAAEEKYKQE---VQ----MKNIL------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 252 tV~eni~~~~~~~~~---~~----~~~~L------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
||.+++..++..... .. ....+ ..++++++.+||||| .+|++|++|||++ ||+..
T Consensus 385 tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 385 TVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred cHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 999999987764321 11 11111 347899999999998 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.+||..|.++ |.+.++.||..
T Consensus 465 qa~VlnLl~~lq~e~g~t~lfISHDl 490 (539)
T COG1123 465 QAQVLNLLKDLQEELGLTYLFISHDL 490 (539)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEeCCH
Confidence 99999999999886 88877777753
No 199
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.68 E-value=2.5e-16 Score=160.23 Aligned_cols=135 Identities=19% Similarity=0.195 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC--C
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD--S 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~--~ 251 (587)
.+|+.++|+||||||||||+++|+|.+++ ..+.|.+++ ...++|++|+.. ++.. .
T Consensus 28 ~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p---~~G~i~~~~-------------------~~~i~~v~q~~~-~~~~l~~ 84 (251)
T PRK09544 28 KPGKILTLLGPNGAGKSTLVRVVLGLVAP---DEGVIKRNG-------------------KLRIGYVPQKLY-LDTTLPL 84 (251)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECC-------------------ccCEEEeccccc-cccccCh
Confidence 47899999999999999999999999875 245666543 124789998742 2222 4
Q ss_pred cHHHHHHHHHhhh-hH-HH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHH
Q 007851 252 KVMEWVAAEEKYK-QE-VQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVS 315 (587)
Q Consensus 252 tV~eni~~~~~~~-~~-~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~ 315 (587)
++.+++.+..... .. .. ....+....++.+.+||+|+ .+|++|+||||+. +|+.....+.++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~ 164 (251)
T PRK09544 85 TVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLID 164 (251)
T ss_pred hHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 7777765421110 00 00 11224456677788999997 7999999999999 99999999999999
Q ss_pred HHHhC-CcEEEEecCCC
Q 007851 316 RLLST-GTVLVATSNRA 331 (587)
Q Consensus 316 ~L~~~-G~vvV~TSn~~ 331 (587)
++.++ |.+||++||..
T Consensus 165 ~~~~~~g~tiiivsH~~ 181 (251)
T PRK09544 165 QLRRELDCAVLMVSHDL 181 (251)
T ss_pred HHHHhcCCEEEEEecCH
Confidence 99775 77777777764
No 200
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.6e-16 Score=162.56 Aligned_cols=149 Identities=13% Similarity=0.180 Sum_probs=102.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+||||||||+++++|.+++. ...+++|.+++. ++... .. .....++.+++++|++. ++.+
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~--~i~~~--~~--~~~~~~~~i~~v~q~~~--~~~~ 103 (261)
T PRK14263 32 RKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQ--DVYGK--GV--DPVVVRRYIGMVFQQPN--PFSM 103 (261)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCE--ecccc--cc--chHhhhhceEEEecCCc--cccc
Confidence 579999999999999999999999998641 013567777763 22110 00 00011346899999743 3469
Q ss_pred cHHHHHHHHHhhhh---H--HHHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYKQ---E--VQMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~~---~--~~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+.+|+.+...... . ......+ ....+..+.+||+|+ .+|+||+||||++ +|+.
T Consensus 104 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~ 183 (261)
T PRK14263 104 SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPI 183 (261)
T ss_pred cHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHH
Confidence 99999987643211 0 0111111 112334456899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.++|.++. +|.+||++||..
T Consensus 184 ~~~~l~~~l~~~~-~~~tii~isH~~ 208 (261)
T PRK14263 184 ATRRVEELMVELK-KDYTIALVTHNM 208 (261)
T ss_pred HHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 9999999999995 467777777753
No 201
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.3e-16 Score=163.72 Aligned_cols=148 Identities=14% Similarity=0.157 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++.. ...|+|.+++. ++... .. .....++.+++++|+. .++ ..
T Consensus 37 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~--~i~~~--~~--~~~~~~~~i~~v~q~~-~l~-~~ 108 (269)
T PRK14259 37 PRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGT--DLYDP--RV--DPVEVRRRIGMVFQQP-NPF-PK 108 (269)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE--Ecccc--cC--CHHHHhhceEEEccCC-ccc-hh
Confidence 5789999999999999999999999876200 13466776652 22100 00 0001124589999974 333 36
Q ss_pred cHHHHHHHHHhhhh---H--HHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYKQ---E--VQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~~---~--~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
||.+|+.+.....+ . ...... +....++.+.+||+|+ .+|+||+||||++ +|+.
T Consensus 109 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~ 188 (269)
T PRK14259 109 SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPI 188 (269)
T ss_pred hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 99999987543211 0 011111 1233455667899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+..+.++|.++.+ +.+||++||.
T Consensus 189 ~~~~l~~~l~~~~~-~~tiiivtH~ 212 (269)
T PRK14259 189 STLKIEETMHELKK-NFTIVIVTHN 212 (269)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 99999999999854 6666666665
No 202
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.3e-16 Score=159.87 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=100.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc---CCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT---EGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l---~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+|+||||||||+++|+|.. ++ ....|.|.+++. ++...... ....++.++|++|++. ++ .
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~-~~~~G~i~~~g~--~~~~~~~~----~~~~~~~i~~v~q~~~-~~-~ 97 (250)
T PRK14245 27 EEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPA-TRLEGEIRIDGR--NIYDKGVQ----VDELRKNVGMVFQRPN-PF-P 97 (250)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhhhhcccCC-CCCceEEEECCE--eccccccc----HHHHhhheEEEecCCc-cC-c
Confidence 478999999999999999999999963 32 112467777663 22110000 0011246899999743 33 4
Q ss_pred CcHHHHHHHHHhhhh---H----HHHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 251 SKVMEWVAAEEKYKQ---E----VQMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 251 ~tV~eni~~~~~~~~---~----~~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.|+.+|+.+.....+ . ......+ ....++.+.+||+|+ .+|++|+||||++ +
T Consensus 98 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~L 177 (250)
T PRK14245 98 KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASAL 177 (250)
T ss_pred ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 699999987543211 0 0111111 123455667999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.+++.++. +|.+||++||..
T Consensus 178 D~~~~~~l~~~l~~~~-~~~tiiivtH~~ 205 (250)
T PRK14245 178 DPISTAKVEELIHELK-KDYTIVIVTHNM 205 (250)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 9999999999999985 467776676653
No 203
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.4e-16 Score=159.66 Aligned_cols=150 Identities=15% Similarity=0.077 Sum_probs=103.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCccc--ceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~--~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++... ..+.|++++. ++.. . .......++.++|++|+. .+++.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~--~~~~-~---~~~~~~~~~~i~~~~q~~-~~~~~~ 100 (252)
T PRK14272 28 QRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQ--DIYG-P---RVDPVAMRRRVGMVFQKP-NPFPTM 100 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCE--Eccc-C---ccCHHHhhceeEEEeccC-ccCcCC
Confidence 47899999999999999999999999865211 2467777652 2210 0 000001134689999973 466668
Q ss_pred cHHHHHHHHHhhh---hHHH----Hhc---------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYK---QEVQ----MKN---------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~---~~~~----~~~---------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+..... .... ... .+....+..+.+||+|| .+|+||+||||++ +|
T Consensus 101 t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 180 (252)
T PRK14272 101 SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALD 180 (252)
T ss_pred CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 9999998654321 1110 001 01233456678999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|+++.+ +.+||++||..
T Consensus 181 ~~~~~~l~~~l~~~~~-~~tiii~sH~~ 207 (252)
T PRK14272 181 PASTARIEDLMTDLKK-VTTIIIVTHNM 207 (252)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 9999999999999864 67777777753
No 204
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=162.42 Aligned_cols=149 Identities=14% Similarity=0.091 Sum_probs=101.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCccc--ceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK--HRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~--~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++... .+|+|.+++. ++... ..........+++++|+.. ++ .+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~--~i~~~----~~~~~~~~~~i~~v~q~~~-l~-~~ 102 (259)
T PRK14260 31 YRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ--NIYDP----RININRLRRQIGMVFQRPN-PF-PM 102 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCE--ecccc----ccchHhhhhheEEEecccc-cC-Cc
Confidence 47899999999999999999999999874101 2467777652 22110 0000011246899999743 33 48
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. ..... +....++.+.+||+|+ .+|++|+||||++ +|
T Consensus 103 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD 182 (259)
T PRK14260 103 SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182 (259)
T ss_pred cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99999987543211 00 01111 1234556667999997 7999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|.++.+ +.+||++||..
T Consensus 183 ~~~~~~l~~~l~~~~~-~~tiii~tH~~ 209 (259)
T PRK14260 183 PIATMKVEELIHSLRS-ELTIAIVTHNM 209 (259)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 9999999999999865 56776666753
No 205
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.9e-16 Score=162.80 Aligned_cols=144 Identities=17% Similarity=0.205 Sum_probs=101.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++.. .. ....++|++|++.. ..+..+
T Consensus 31 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~i~~---~~------~~~~i~~v~q~~~~~~~~~~~ 96 (272)
T PRK15056 31 PGGSIAALVGVNGSGKSTLFKALMGFVRL---ASGKISILGQ--PTRQ---AL------QKNLVAYVPQSEEVDWSFPVL 96 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--EhHH---hh------ccceEEEeccccccccCCCcc
Confidence 47899999999999999999999999875 2456777652 2211 00 11358999997532 123346
Q ss_pred HHHHHHHHHh----h-----hh-HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEK----Y-----KQ-EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~----~-----~~-~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+.+|+.++.. . .. ..... ..+....++.+.+||||+ .+|+||+||||++ +|+.
T Consensus 97 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~ 176 (272)
T PRK15056 97 VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVK 176 (272)
T ss_pred hhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 7887754210 0 00 00011 123445677788999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.++|..+.++|.+||++||..
T Consensus 177 ~~~~l~~~L~~~~~~g~tviivsH~~ 202 (272)
T PRK15056 177 TEARIISLLRELRDEGKTMLVSTHNL 202 (272)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 99999999999987788777777753
No 206
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2e-16 Score=160.17 Aligned_cols=149 Identities=12% Similarity=0.108 Sum_probs=101.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++ +. ...++|.+++. ++... .. .....++.+++++|++ .++ ..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~--~~~~~--~~--~~~~~~~~i~~~~q~~-~~~-~~ 98 (250)
T PRK14240 27 EENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ--DIYKS--DI--DVNQLRKRVGMVFQQP-NPF-PM 98 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE--Ecccc--cc--chHHHhccEEEEecCC-ccC-cc
Confidence 47899999999999999999999998752 10 12467777652 22110 00 0001124689999974 333 48
Q ss_pred cHHHHHHHHHhhhh---H----HHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---E----VQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~----~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ . ...... +....++.+.+||+|| .+|++|+||||++ +|
T Consensus 99 t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 178 (250)
T PRK14240 99 SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALD 178 (250)
T ss_pred cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99999987643211 0 001111 1233456677899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|.++.+ |.+||++||..
T Consensus 179 ~~~~~~l~~~l~~~~~-~~tiii~sH~~ 205 (250)
T PRK14240 179 PISTLKIEELIQELKK-DYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEEeCH
Confidence 9999999999999854 67777777753
No 207
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.3e-16 Score=177.57 Aligned_cols=148 Identities=18% Similarity=0.189 Sum_probs=105.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++. ...|.|.+++. ++.. ..... .++.+++++|++ .+++.+|
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~~~~~~t 98 (506)
T PRK13549 29 RAGEIVSLCGENGAGKSTLMKVLSGVYPHG-TYEGEIIFEGE--ELQASNIRDT------ERAGIAIIHQEL-ALVKELS 98 (506)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCE--ECCCCCHHHH------HHCCeEEEEecc-ccCCCCc
Confidence 478999999999999999999999998741 13467777652 1110 00000 124689999974 4667799
Q ss_pred HHHHHHHHHhhh-----hHH----HHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 253 VMEWVAAEEKYK-----QEV----QMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 253 V~eni~~~~~~~-----~~~----~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
|.+|+.++.... ... ..... +....++.+.+||||| .+|+||+||||++ +|+..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~ 178 (506)
T PRK13549 99 VLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESE 178 (506)
T ss_pred HHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 999998764311 111 11111 1223466678999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+.++|.++.++|.+||++||..
T Consensus 179 ~~~l~~~l~~l~~~~~tvi~~tH~~ 203 (506)
T PRK13549 179 TAVLLDIIRDLKAHGIACIYISHKL 203 (506)
T ss_pred HHHHHHHHHHHHHCCCEEEEEeCcH
Confidence 9999999999987787777666754
No 208
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.68 E-value=1.4e-16 Score=177.92 Aligned_cols=143 Identities=17% Similarity=0.141 Sum_probs=100.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+||+|||||||++++.|..+| .+|+|.+++ .++.+. ... .++.+++|+|+ +.+++.|
T Consensus 358 i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p---~~G~I~i~g--~~i~~~-~~~------lr~~i~~V~Q~--~~lF~~T 423 (529)
T TIGR02868 358 LPPGERVAILGPSGSGKSTLLMLLTGLLDP---LQGEVTLDG--VSVSSL-QDE------LRRRISVFAQD--AHLFDTT 423 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECC--EEhhhH-HHH------HHhheEEEccC--ccccccc
Confidence 357999999999999999999999999986 245666665 233322 111 23578999996 5778899
Q ss_pred HHHHHHHHHhhhhHHHHh-----ccHHHHHhH-----------hhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMK-----NILPAVADK-----------FLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~-----~~L~~la~~-----------l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++|||.++.......+.. ..+.+...+ ....||||| ++|+||+|||||+ +|.
T Consensus 424 I~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~ 503 (529)
T TIGR02868 424 VRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDA 503 (529)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 999999864321111111 112222222 224699997 8999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.....+.+.+..+.+ +.|+|+.+|+
T Consensus 504 ~te~~I~~~l~~~~~-~~TvIiItHr 528 (529)
T TIGR02868 504 GTESELLEDLLAALS-GKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHHHhcC-CCEEEEEecC
Confidence 999999999887644 4555555554
No 209
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.7e-16 Score=159.19 Aligned_cols=149 Identities=15% Similarity=0.150 Sum_probs=102.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|..++.. ...+.|.+++. ++.. .. . ......+.+++++|++. + +..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~--~~~~-~~-~--~~~~~~~~i~~~~q~~~-~-~~~ 98 (250)
T PRK14262 27 FKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ--DIYD-PQ-L--DVTEYRKKVGMVFQKPT-P-FPM 98 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE--Eccc-ch-h--hHHHhhhhEEEEecCCc-c-Ccc
Confidence 4789999999999999999999999986300 13467777653 2211 00 0 00011246899999743 3 348
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. ..... +....++.+.+||+|+ .+|+||+||||++ +|
T Consensus 99 tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD 178 (250)
T PRK14262 99 SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALD 178 (250)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccC
Confidence 99999987543211 00 01111 1223566678999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|.++.+ +.+||++||..
T Consensus 179 ~~~~~~l~~~l~~~~~-~~tili~sH~~ 205 (250)
T PRK14262 179 PIATQRIEKLLEELSE-NYTIVIVTHNI 205 (250)
T ss_pred HHHHHHHHHHHHHHhc-CcEEEEEeCCH
Confidence 9999999999999865 67777777753
No 210
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.68 E-value=1.3e-16 Score=157.09 Aligned_cols=141 Identities=14% Similarity=0.205 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++|+|..++ .++.|.+++. .+.. ... ...++.++|++|++ .++..|+
T Consensus 32 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~---~~G~i~~~g~--~~~~-~~~-----~~~~~~i~~v~q~~--~~~~~tv 98 (207)
T cd03369 32 KAGEKIGIVGRTGAGKSTLILALFRFLEA---EEGKIEIDGI--DIST-IPL-----EDLRSSLTIIPQDP--TLFSGTI 98 (207)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcccCC---CCCeEEECCE--EhHH-CCH-----HHHHhhEEEEecCC--cccCccH
Confidence 47899999999999999999999999875 2456666652 2211 000 01124689999974 3345699
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTG 321 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G 321 (587)
.+|+.+.... ........+. .+..+.+||+|+ .+|++|+||||+. +|+.....+.++|..+. +|
T Consensus 99 ~~~l~~~~~~-~~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~ 174 (207)
T cd03369 99 RSNLDPFDEY-SDEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TN 174 (207)
T ss_pred HHHhcccCCC-CHHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CC
Confidence 9999653211 1111111122 345567899996 7999999999999 99999999999999985 47
Q ss_pred cEEEEecCCC
Q 007851 322 TVLVATSNRA 331 (587)
Q Consensus 322 ~vvV~TSn~~ 331 (587)
.++|++||..
T Consensus 175 ~tiii~th~~ 184 (207)
T cd03369 175 STILTIAHRL 184 (207)
T ss_pred CEEEEEeCCH
Confidence 7776777753
No 211
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.9e-16 Score=159.23 Aligned_cols=149 Identities=11% Similarity=0.126 Sum_probs=101.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++ +. ..+++|.+++. ++... .......++.+++++|+. .+++.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~--~i~~~----~~~~~~~~~~i~~~~q~~-~~~~~~ 100 (252)
T PRK14256 28 PENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDT--DIYDR----GVDPVSIRRRVGMVFQKP-NPFPAM 100 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCE--Ecccc----cCChHHhhccEEEEecCC-CCCCcC
Confidence 57899999999999999999999999852 11 12467777652 22100 000001134689999974 456668
Q ss_pred cHHHHHHHHHhhhh---HH----HHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.++....+ .. .....+ ....+..+.+||+|+ .+|++|+||||++ +|
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD 180 (252)
T PRK14256 101 SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALD 180 (252)
T ss_pred cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99999986532211 10 011111 123345567899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+.....+.++|+++.+ +.+||++||.
T Consensus 181 ~~~~~~l~~~l~~~~~-~~tiiivsH~ 206 (252)
T PRK14256 181 PISTLKIEELIEELKE-KYTIIIVTHN 206 (252)
T ss_pred HHHHHHHHHHHHHHHh-CCcEEEEECC
Confidence 9999999999999976 4666666665
No 212
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.68 E-value=2.5e-16 Score=175.91 Aligned_cols=155 Identities=17% Similarity=0.137 Sum_probs=104.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc--CCcccceEEEEEehh---------------------HHHHH---HHHHHH-
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEA---------------------MLKIN---EHMHRL- 226 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l--~~~~~~k~rvhf~~f---------------------m~~v~---~~l~~~- 226 (587)
.+|+.++|+|||||||||||++|+|.. ++ . +|.|.+++. ..++. ..+...
T Consensus 24 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p-~--~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~ 100 (520)
T TIGR03269 24 EEGEVLGILGRSGAGKSVLMHVLRGMDQYEP-T--SGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLS 100 (520)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhcccCCC-C--ceEEEEeccccccccccccccccccccccccccccccchhhhccC
Confidence 478999999999999999999999997 33 3 355555410 00000 000000
Q ss_pred hhhhhhcccceeeeeccCCCCCCCCcHHHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-------
Q 007851 227 WKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ------- 288 (587)
Q Consensus 227 ~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq------- 288 (587)
.......++.+++++|+...+++.+||.+|+.++....+ .. ... ..+...+++.+.+|||||
T Consensus 101 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~iA 180 (520)
T TIGR03269 101 DKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARDLSGGEKQRVVLA 180 (520)
T ss_pred HHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCcccCCHHHHHHHHHH
Confidence 000011124689999974456677899999987643211 10 111 123445677788999997
Q ss_pred ----CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 289 ----RGASILCFDEIQT-VDVFAIVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 289 ----~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.+|+||+||||++ +|+..+..+.++|.++.+ .|.+||++||..
T Consensus 181 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~ 229 (520)
T TIGR03269 181 RQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWP 229 (520)
T ss_pred HHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH
Confidence 7999999999999 999999999999999966 477776666654
No 213
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=161.77 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++ +. ...+.|.+++. ++... .. .....+..++|++|+.. .+ ..
T Consensus 36 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~--~~~~~--~~--~~~~~~~~i~~v~q~~~-~~-~~ 107 (259)
T PRK14274 36 PENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGS--NILKG--KV--DLVELRKNIGMVFQKGN-PF-PQ 107 (259)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCE--Ecccc--cc--CHHHHhhceEEEecCCc-cc-cc
Confidence 47899999999999999999999999863 11 12467777653 22100 00 00011246899999743 33 35
Q ss_pred cHHHHHHHHHhhhh---HH----HHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. .....+ ....+..+.+||+|| .+|+||+||||++ +|
T Consensus 108 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 187 (259)
T PRK14274 108 SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALD 187 (259)
T ss_pred CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 99999987543211 01 011111 123345567899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+..+.++|.++.+ +.+||++||.
T Consensus 188 ~~~~~~l~~~l~~~~~-~~tiiivtH~ 213 (259)
T PRK14274 188 PVSTRKIEELILKLKE-KYTIVIVTHN 213 (259)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEEcC
Confidence 9999999999999865 5666666664
No 214
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.68 E-value=2.1e-16 Score=160.36 Aligned_cols=145 Identities=21% Similarity=0.277 Sum_probs=103.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++++|..++ .|.|.+++. ++...-.. .....++|++|+. ..++.+|+
T Consensus 20 ~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~----~G~i~~~g~--~i~~~~~~------~~~~~i~~v~q~~-~~~~~~tv 86 (248)
T PRK03695 20 RAGEILHLVGPNGAGKSTLLARMAGLLPG----SGSIQFAGQ--PLEAWSAA------ELARHRAYLSQQQ-TPPFAMPV 86 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC----CeEEEECCE--ecCcCCHH------HHhhheEEecccC-ccCCCccH
Confidence 47899999999999999999999998852 356776652 22110000 0113478999863 45667899
Q ss_pred HHHHHHHHhhh--hH---HHHhc-----cHHHHHhHhhhhhcccC-----------C-------CccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEEKYK--QE---VQMKN-----ILPAVADKFLVDQHADQ-----------R-------GASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~~~~--~~---~~~~~-----~L~~la~~l~~~LSgGq-----------~-------~p~LL~LDEPt~-lD~ 304 (587)
.+|+.+..... .. ..... .+....++.+.+||+|+ . +|++|+||||+. +|+
T Consensus 87 ~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~ 166 (248)
T PRK03695 87 FQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV 166 (248)
T ss_pred HHHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCH
Confidence 99998753211 00 01111 23445667778999996 4 669999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+..+.++|.++.++|.+||++||..
T Consensus 167 ~~~~~l~~~L~~~~~~~~tvi~~sH~~ 193 (248)
T PRK03695 167 AQQAALDRLLSELCQQGIAVVMSSHDL 193 (248)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 999999999999987788887777764
No 215
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.68 E-value=3.2e-16 Score=178.69 Aligned_cols=152 Identities=15% Similarity=0.130 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHH--------HHHH-HHHHHhhhhhhcccceeeeeccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--------KINE-HMHRLWKNQVAEKSLRSSISGWI 244 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~--------~v~~-~l~~~~~~~~~~~~~ig~v~q~~ 244 (587)
.+|+.++|+|+||||||||+++|+|++++ . .+.|.+++... .+.. .....+ ....+.+|+++|++
T Consensus 40 ~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p-~--~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~---~~r~~~ig~v~Q~~ 113 (623)
T PRK10261 40 QRGETLAIVGESGSGKSVTALALMRLLEQ-A--GGLVQCDKMLLRRRSRQVIELSEQSAAQMR---HVRGADMAMIFQEP 113 (623)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC-C--CeEEEECCEEeccccccccccccCCHHHHH---HHhCCCEEEEEeCc
Confidence 47899999999999999999999999975 2 34555443100 0000 000000 00124689999985
Q ss_pred C-CCCCCCcHHHHHHHHHhhh-h--H----HHHhc-----cH---HHHHhHhhhhhcccC-----------CCccEEEEe
Q 007851 245 T-NLPFDSKVMEWVAAEEKYK-Q--E----VQMKN-----IL---PAVADKFLVDQHADQ-----------RGASILCFD 297 (587)
Q Consensus 245 ~-~~~~~~tV~eni~~~~~~~-~--~----~~~~~-----~L---~~la~~l~~~LSgGq-----------~~p~LL~LD 297 (587)
. .+++.+||.+|+.++.... + . ..... .+ ...+++.+.+||||| .+|+||+||
T Consensus 114 ~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllD 193 (623)
T PRK10261 114 MTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193 (623)
T ss_pred hhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEe
Confidence 3 4566799999998865431 1 1 11111 12 134677788999997 799999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 298 EIQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 298 EPt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|||+ ||+..+..+.++++++.++ |.+||++||..
T Consensus 194 EPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl 229 (623)
T PRK10261 194 EPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDM 229 (623)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 9999 9999999999999999865 77766666654
No 216
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.67 E-value=2.9e-16 Score=154.23 Aligned_cols=132 Identities=17% Similarity=0.166 Sum_probs=95.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|.||||||||||+++|+|..++ .. |.|.+++ .++|++|++. +++.|+
T Consensus 29 ~~G~~~~i~G~nG~GKSTLl~~i~G~~~~-~~--G~i~~~g---------------------~i~~~~q~~~--l~~~t~ 82 (204)
T cd03250 29 PKGELVAIVGPVGSGKSSLLSALLGELEK-LS--GSVSVPG---------------------SIAYVSQEPW--IQNGTI 82 (204)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcCCC-CC--CeEEEcC---------------------EEEEEecCch--hccCcH
Confidence 57899999999999999999999999875 33 4565543 3689998743 347899
Q ss_pred HHHHHHHHhhhhH--HHH--hccHHH-----------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQM--KNILPA-----------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~~--~~~L~~-----------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+....... ... ...+.. ..+....+||+|+ .+|++|+||||++ +|+..
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~ 162 (204)
T cd03250 83 RENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHV 162 (204)
T ss_pred HHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 9999875332110 010 001111 1223346899996 7999999999999 99999
Q ss_pred HHHHHH-HHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSG-IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~-Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+.+ ++..+.+.|.+||++||..
T Consensus 163 ~~~l~~~ll~~~~~~~~tvi~~sh~~ 188 (204)
T cd03250 163 GRHIFENCILGLLLNNKTRILVTHQL 188 (204)
T ss_pred HHHHHHHHHHHhccCCCEEEEEeCCH
Confidence 888877 5676666678887777764
No 217
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.7e-16 Score=161.21 Aligned_cols=148 Identities=14% Similarity=0.151 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.++++. ...|.|.+++. ++... . . .....++.+++++|++. .+ ..
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~--~i~~~-~-~--~~~~~~~~i~~v~q~~~-~~-~~ 114 (267)
T PRK14235 43 PEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE--DIYDP-R-L--DVVELRARVGMVFQKPN-PF-PK 114 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE--ECccc-c-c--chHHHhhceEEEecCCC-CC-CC
Confidence 5799999999999999999999999986410 13467777652 22110 0 0 00011246899999743 33 35
Q ss_pred cHHHHHHHHHhhhh----HH----HHhcc-----H----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 252 KVMEWVAAEEKYKQ----EV----QMKNI-----L----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 252 tV~eni~~~~~~~~----~~----~~~~~-----L----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
|+.+|+.+.....+ .. ..... + ....++.+.+||+|+ .+|+||+||||+. +
T Consensus 115 tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 194 (267)
T PRK14235 115 SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSAL 194 (267)
T ss_pred cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 99999987643211 00 01111 1 112345567899997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
|+.....+.++|..+.+ +.+||++||.
T Consensus 195 D~~~~~~l~~~L~~l~~-~~tiiivtH~ 221 (267)
T PRK14235 195 DPIATAKVEELIDELRQ-NYTIVIVTHS 221 (267)
T ss_pred CHHHHHHHHHHHHHHhc-CCeEEEEEcC
Confidence 99999999999999865 5666666665
No 218
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.67 E-value=1.1e-16 Score=178.15 Aligned_cols=146 Identities=17% Similarity=0.137 Sum_probs=104.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.+++. ++.. ..... .+..+++++|+. .+++.+|
T Consensus 29 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p-~--~G~i~~~g~--~i~~~~~~~~------~~~~i~~v~q~~-~~~~~~t 96 (510)
T PRK09700 29 YPGEIHALLGENGAGKSTLMKVLSGIHEP-T--KGTITINNI--NYNKLDHKLA------AQLGIGIIYQEL-SVIDELT 96 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCcCC-C--ccEEEECCE--ECCCCCHHHH------HHCCeEEEeecc-cccCCCc
Confidence 47899999999999999999999999975 2 456666542 1110 00000 124689999973 4667789
Q ss_pred HHHHHHHHHh----hhh-----HH----HHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 253 VMEWVAAEEK----YKQ-----EV----QMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 253 V~eni~~~~~----~~~-----~~----~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
|.+|+.++.. ..+ .. ..... +....++.+.+||||| .+|+||+||||++ +
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~L 176 (510)
T PRK09700 97 VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSL 176 (510)
T ss_pred HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Confidence 9999986431 001 00 11111 2223566778999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.++|.++.+.|.+||++||..
T Consensus 177 D~~~~~~l~~~l~~l~~~g~tiiivsHd~ 205 (510)
T PRK09700 177 TNKEVDYLFLIMNQLRKEGTAIVYISHKL 205 (510)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 99999999999999988888777777754
No 219
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.8e-16 Score=159.27 Aligned_cols=148 Identities=14% Similarity=0.126 Sum_probs=100.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||+|||||+++|+|..++.. ...|.|.+++. ++... .......++.+++++|++ .+ +.+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~--~i~~~----~~~~~~~~~~i~~~~q~~-~~-~~~ 99 (251)
T PRK14270 28 YENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGK--NIYDK----DVDVVELRKRVGMVFQKP-NP-FPM 99 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCE--ecccc----cccHHHHHhheEEEecCC-Cc-CCC
Confidence 4789999999999999999999999876410 12466777652 22100 000001124689999974 33 348
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. ..... +....+..+.+||+|+ .+|+||+||||++ +|
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14270 100 SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALD 179 (251)
T ss_pred cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999987643211 00 01111 1223455677999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+..+.+++..+.+ +.+||++||.
T Consensus 180 ~~~~~~l~~~L~~~~~-~~tiiivsH~ 205 (251)
T PRK14270 180 PISTLKIEDLMVELKK-EYTIVIVTHN 205 (251)
T ss_pred HHHHHHHHHHHHHHHh-CCeEEEEEcC
Confidence 9999999999999876 4666666664
No 220
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.6e-16 Score=161.25 Aligned_cols=149 Identities=15% Similarity=0.120 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.++++ ....|.|.+++. ++... .......++.+++++|++ .++ ..
T Consensus 44 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~~~~~----~~~~~~~~~~i~~v~q~~-~~~-~~ 115 (267)
T PRK14237 44 EKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGI--DINRK----EINVYEMRKHIGMVFQRP-NPF-AK 115 (267)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCE--Ecccc----cCChHHHhcceEEEecCC-ccc-cc
Confidence 578999999999999999999999998631 013466777652 22100 000001134689999974 233 46
Q ss_pred cHHHHHHHHHhhhh---HHH----Hhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EVQ----MKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~~----~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.++....+ ... .... +....++.+.+||+|+ .+|++|+||||++ +|
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD 195 (267)
T PRK14237 116 SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALD 195 (267)
T ss_pred cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999987643211 100 1111 1234566678999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.+++..+. +|.+||++||..
T Consensus 196 ~~~~~~l~~~l~~~~-~~~tiii~tH~~ 222 (267)
T PRK14237 196 PISTMQLEETMFELK-KNYTIIIVTHNM 222 (267)
T ss_pred HHHHHHHHHHHHHHh-cCCEEEEEecCH
Confidence 999999999999995 467777777754
No 221
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.67 E-value=2.3e-16 Score=180.59 Aligned_cols=144 Identities=15% Similarity=0.199 Sum_probs=103.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+|+||||||||+|++.|...|. .|+|.+++. ++.. ....+ ++.+|+|.|+ +.++..
T Consensus 496 I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~---~G~I~~dg~--dl~~i~~~~l-------R~~ig~V~Q~--~~Lf~g 561 (709)
T COG2274 496 IPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQ---QGRILLDGV--DLNDIDLASL-------RRQVGYVLQD--PFLFSG 561 (709)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECCE--eHHhcCHHHH-------HhheeEEccc--chhhcC
Confidence 4678999999999999999999999999863 467777764 3322 11222 3578999996 688999
Q ss_pred cHHHHHHHHHhhhhHHHHh-----ccHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEVQMK-----NILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~-----~~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|++||+.++.......+.. ..+.+.. .+....||||| .+|+||+|||+|+ +|
T Consensus 562 SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD 641 (709)
T COG2274 562 SIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALD 641 (709)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccC
Confidence 9999999865433211110 1111122 22334799997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.+.+-+.++... .|+|+.+||.
T Consensus 642 ~~sE~~I~~~L~~~~~~-~T~I~IaHRl 668 (709)
T COG2274 642 PETEAIILQNLLQILQG-RTVIIIAHRL 668 (709)
T ss_pred HhHHHHHHHHHHHHhcC-CeEEEEEccc
Confidence 99999999999888654 5555555553
No 222
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.2e-16 Score=158.47 Aligned_cols=147 Identities=14% Similarity=0.160 Sum_probs=100.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++++|..++.....|+|.+++. ++...-. ...++.++|++|++. + +..|+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~--~i~~~~~------~~~~~~i~~~~q~~~-l-~~~tv 95 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGK--DVKNQDV------VALRKNVGMVFQQPN-V-FVKSI 95 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCE--ecccCCH------HHHhhhEEEEecCCc-c-ccccH
Confidence 478999999999999999999999987521113466777653 2211000 011246899999743 3 34799
Q ss_pred HHHHHHHHhhhh-----H-H--HHhcc-----H----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEEKYKQ-----E-V--QMKNI-----L----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~~~~~-----~-~--~~~~~-----L----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
.+|+.+.....+ . . ..... + ....++.+.+||+|+ .+|+||+||||+. +|+
T Consensus 96 ~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~ 175 (246)
T PRK14269 96 YENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDP 175 (246)
T ss_pred HHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 999987532211 0 0 01111 1 123455567899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+..+.++|.++.+ |.+||++||..
T Consensus 176 ~~~~~l~~~l~~~~~-~~tiii~tH~~ 201 (246)
T PRK14269 176 ISSGVIEELLKELSH-NLSMIMVTHNM 201 (246)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 999999999999865 77777776653
No 223
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.8e-16 Score=159.28 Aligned_cols=148 Identities=11% Similarity=0.098 Sum_probs=102.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCccc---ceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVK---HRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~---~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+||||||||||+++|+|.+++. . ..+.|.+++. ++... .......++.++|++|++. ++ .
T Consensus 28 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~-~~~~~~G~v~~~g~--~~~~~----~~~~~~~~~~i~~v~q~~~-~~-~ 98 (251)
T PRK14249 28 PERQITAIIGPSGCGKSTLLRALNRMNDIV-SGARLEGAVLLDNE--NIYSP----NLDVVNLRKRVGMVFQQPN-PF-P 98 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCcc-ccCCcccEEEECCE--Ecccc----ccChHHhhceEEEEecCCc-cC-c
Confidence 478999999999999999999999998752 1 1366777652 22100 0000011356899999743 33 4
Q ss_pred CcHHHHHHHHHhhhh---H----HHHhc-----c----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 251 SKVMEWVAAEEKYKQ---E----VQMKN-----I----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 251 ~tV~eni~~~~~~~~---~----~~~~~-----~----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.|+.+|+.+.....+ . ..... . +....++.+.+||+|| .+|++|+||||++ +
T Consensus 99 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~L 178 (251)
T PRK14249 99 KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSAL 178 (251)
T ss_pred CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 599999987643211 0 00111 1 1234556677899997 7999999999998 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.++|..+. +|.+||++||..
T Consensus 179 D~~~~~~l~~~l~~~~-~~~tilivsh~~ 206 (251)
T PRK14249 179 DPVSTMRIEELMQELK-QNYTIAIVTHNM 206 (251)
T ss_pred CHHHHHHHHHHHHHHh-cCCEEEEEeCCH
Confidence 9999999999999984 577777776653
No 224
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.67 E-value=3.2e-16 Score=156.61 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=97.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||||||||||+++++|..++ ..+.|.+++. .+. ... ....+.+.+||
T Consensus 46 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p---~~G~i~~~g~--~~~----~~~---------------~~~~~~~~~tv 101 (224)
T cd03220 46 PRGERIGLIGRNGAGKSTLLRLLAGIYPP---DSGTVTVRGR--VSS----LLG---------------LGGGFNPELTG 101 (224)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--Ech----hhc---------------ccccCCCCCcH
Confidence 57899999999999999999999999875 2456666652 111 000 00123456899
Q ss_pred HHHHHHHHhhhh--HH----HHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .. ... ..+....++.+.+||+|+ .+|++|+||||+. +|+..+..+
T Consensus 102 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~ 181 (224)
T cd03220 102 RENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKC 181 (224)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 999987643221 11 011 123445667778999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|..+.++|.+||++||..
T Consensus 182 ~~~l~~~~~~~~tiii~sH~~ 202 (224)
T cd03220 182 QRRLRELLKQGKTVILVSHDP 202 (224)
T ss_pred HHHHHHHHhCCCEEEEEeCCH
Confidence 999999987777777777763
No 225
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.67 E-value=5.9e-16 Score=158.82 Aligned_cols=150 Identities=15% Similarity=0.153 Sum_probs=103.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
.+|+.++|.||||||||||+++|+|..++ . .|.|.+++. ++...-... ....++.+++++|+.. .+.+..+
T Consensus 36 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--sG~i~~~g~--~~~~~~~~~---~~~~~~~i~~v~q~~~~~~~~~~t 107 (268)
T PRK10419 36 KSGETVALLGRSGCGKSTLARLLVGLESP-S--QGNVSWRGE--PLAKLNRAQ---RKAFRRDIQMVFQDSISAVNPRKT 107 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--eccccChhH---HHHHHhcEEEEEcChhhccCCCCC
Confidence 47899999999999999999999999875 3 356666653 221100000 0011246899999853 3455689
Q ss_pred HHHHHHHHHhhh----h-H--HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYK----Q-E--VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~----~-~--~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
+.+|+.+..... . . ..... .+. .+.++.+.+||+|+ .+|+|||||||+. +|+...
T Consensus 108 ~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~ 187 (268)
T PRK10419 108 VREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQ 187 (268)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 999986543210 0 0 01111 121 34566677899997 7999999999998 999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 308 VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+.++|..+.++ |.+||++||..
T Consensus 188 ~~~~~~l~~~~~~~~~tiiivsH~~ 212 (268)
T PRK10419 188 AGVIRLLKKLQQQFGTACLFITHDL 212 (268)
T ss_pred HHHHHHHHHHHHHcCcEEEEEECCH
Confidence 9999999999765 77777777753
No 226
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.67 E-value=2.1e-16 Score=156.80 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=99.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|||||||||||++|+|..++ . .+.|.+++. ++... .. ...++.+++++|++. ++..|+
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~--~~~~~-~~-----~~~~~~i~~~~q~~~--l~~~tv 94 (221)
T cd03244 28 KPGEKVGIVGRTGSGKSSLLLALFRLVEL-S--SGSILIDGV--DISKI-GL-----HDLRSRISIIPQDPV--LFSGTI 94 (221)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHcCCCC-C--CCEEEECCE--EhHhC-CH-----HHHhhhEEEECCCCc--cccchH
Confidence 47899999999999999999999999875 2 356766653 22110 00 011246899999753 455799
Q ss_pred HHHHHHHHhhhhH--HH--HhccHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQ--MKNILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~--~~~~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+....... .. ....+.... +..+.+||+|+ .+|++|+||||+. +|+..
T Consensus 95 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~ 174 (221)
T cd03244 95 RSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174 (221)
T ss_pred HHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 9999643211100 00 001122222 24567899997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+.++|..+.+ +.+||++||..
T Consensus 175 ~~~l~~~l~~~~~-~~tii~~sh~~ 198 (221)
T cd03244 175 DALIQKTIREAFK-DCTVLTIAHRL 198 (221)
T ss_pred HHHHHHHHHHhcC-CCEEEEEeCCH
Confidence 9999999999864 56666666653
No 227
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.2e-16 Score=178.71 Aligned_cols=149 Identities=17% Similarity=0.108 Sum_probs=107.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCC-CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWIT-NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|++++ . +|.|.|++- ++... ....+ ..++.++|+||++. .+++.+
T Consensus 348 ~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p-~--~G~I~~~g~--~i~~~~~~~~~----~~~~~i~~v~Q~~~~~l~~~~ 418 (623)
T PRK10261 348 WPGETLSLVGESGSGKSTTGRALLRLVES-Q--GGEIIFNGQ--RIDTLSPGKLQ----ALRRDIQFIFQDPYASLDPRQ 418 (623)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC-C--CcEEEECCE--ECCcCCHHHHH----HhcCCeEEEecCchhhcCCCC
Confidence 57899999999999999999999999985 2 456776652 22100 00000 11246899999853 567789
Q ss_pred cHHHHHHHHHhhhh---H----HHHh-----ccH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 252 KVMEWVAAEEKYKQ---E----VQMK-----NIL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 252 tV~eni~~~~~~~~---~----~~~~-----~~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
||.+|+.++....+ . .... ..+ ...+++.+.+||||| .+|+||++|||++ ||+..
T Consensus 419 tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~ 498 (623)
T PRK10261 419 TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSI 498 (623)
T ss_pred CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 99999987543211 1 1111 123 245678889999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.++|..+.++ |.+||++||..
T Consensus 499 ~~~i~~ll~~l~~~~g~tvi~isHdl 524 (623)
T PRK10261 499 RGQIINLLLDLQRDFGIAYLFISHDM 524 (623)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99999999999875 77777777753
No 228
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=3.8e-16 Score=158.30 Aligned_cols=148 Identities=9% Similarity=0.048 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|..+. +. ...++|.+++. ++... .. ........+++++|++. .++ .
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~~~~~--~~--~~~~~~~~i~~~~q~~~-~~~-~ 100 (252)
T PRK14255 29 NQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQ--NIYAP--NE--DVVQLRKQVGMVFQQPN-PFP-F 100 (252)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCE--Ecccc--cc--cHHHhcCeEEEEECCCc-cCC-C
Confidence 47899999999999999999999998641 11 12467777662 22110 00 00011246899999743 333 7
Q ss_pred cHHHHHHHHHhhhh---H----HHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---E----VQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~----~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ . ...... +....+..+.+||+|| .+|+||+||||++ +|
T Consensus 101 tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14255 101 SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALD 180 (252)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 99999987543211 0 001111 1233455667999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+..+.++|..+.+. .+||++||.
T Consensus 181 ~~~~~~l~~~l~~~~~~-~tii~vsH~ 206 (252)
T PRK14255 181 PISSTQIENMLLELRDQ-YTIILVTHS 206 (252)
T ss_pred HHHHHHHHHHHHHHHhC-CEEEEEECC
Confidence 99999999999998664 566666665
No 229
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.2e-16 Score=159.93 Aligned_cols=149 Identities=14% Similarity=0.130 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..+ |.....|+|.+++. ++... .......++.+++++|++. ++..
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~--~~~~~----~~~~~~~~~~i~~v~q~~~--~~~~ 100 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGH--NIYSP----RTDTVDLRKEIGMVFQQPN--PFPM 100 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCE--ECcCc----ccchHhhhhcEEEEecCCc--cCcC
Confidence 4789999999999999999999999853 21012467777652 22100 0000011246899999742 3348
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. ..... +....++.+.+||+|+ .+|+||+||||++ +|
T Consensus 101 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 180 (252)
T PRK14239 101 SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALD 180 (252)
T ss_pred cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 99999987643211 00 01111 1233456677899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|.++.+ +.+||++||..
T Consensus 181 ~~~~~~l~~~l~~~~~-~~tii~~sH~~ 207 (252)
T PRK14239 181 PISAGKIEETLLGLKD-DYTMLLVTRSM 207 (252)
T ss_pred HHHHHHHHHHHHHHhh-CCeEEEEECCH
Confidence 9999999999999865 56666666653
No 230
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.67 E-value=2.7e-16 Score=155.97 Aligned_cols=149 Identities=15% Similarity=0.194 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|..++ . .+.|.+++. .+.. .. ........+..++|++|++ .+++.|+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~-~--~G~i~~~g~--~~~~-~~-~~~~~~~~~~~i~~~~q~~--~~~~~t~ 95 (218)
T cd03290 25 PTGQLTMIVGQVGCGKSSLLLAILGEMQT-L--EGKVHWSNK--NESE-PS-FEATRSRNRYSVAYAAQKP--WLLNATV 95 (218)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC-C--CCeEEECCc--cccc-cc-ccccchhhcceEEEEcCCC--ccccccH
Confidence 47899999999999999999999999875 2 456666652 1110 00 0000001124689999974 2346899
Q ss_pred HHHHHHHHhhhhH--HHHh--ccHHHH-----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQMK--NILPAV-----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~~~--~~L~~l-----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+....... .... ..+... .+..+.+||+|+ .+|++|+||||+. +|+..
T Consensus 96 ~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~ 175 (218)
T cd03290 96 EENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHL 175 (218)
T ss_pred HHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHH
Confidence 9999875322111 1100 011111 123467899997 7999999999999 99999
Q ss_pred HHHHHH--HHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSG--IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~--Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+.+ +++.+.+.|.++|++||..
T Consensus 176 ~~~l~~~~ll~~~~~~~~tii~~sH~~ 202 (218)
T cd03290 176 SDHLMQEGILKFLQDDKRTLVLVTHKL 202 (218)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEeCCh
Confidence 988887 7777766788888888864
No 231
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.9e-16 Score=159.93 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=99.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|..+ +.....|.|.+++. ++... .. ......+.++|++|+. .++ ..
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~i~~~--~~--~~~~~~~~i~~v~q~~-~~~-~~ 116 (268)
T PRK14248 45 EKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGL--NILDS--NI--NVVNLRREIGMVFQKP-NPF-PK 116 (268)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCE--Ecccc--cc--cHHHHhccEEEEecCC-ccC-cc
Confidence 5789999999999999999999999764 10013466777652 22110 00 0001124689999974 333 35
Q ss_pred cHHHHHHHHHhhhh----H---HHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ----E---VQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~----~---~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+...... . ...... +....++.+.+||+|+ .+|++|+||||++ +|
T Consensus 117 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 196 (268)
T PRK14248 117 SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALD 196 (268)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccC
Confidence 99999987543211 0 001111 1234566678999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+..+.+++..+.+ +.+||++||.
T Consensus 197 ~~~~~~l~~~l~~~~~-~~tiii~tH~ 222 (268)
T PRK14248 197 PISNAKIEELITELKE-EYSIIIVTHN 222 (268)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEEEEeC
Confidence 9999999999999865 5666666665
No 232
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.66 E-value=4.9e-16 Score=157.99 Aligned_cols=148 Identities=14% Similarity=0.110 Sum_probs=102.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++.. ..+|.|.+++. ++.. .. ...+.++|++|+... +.+..
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~--~i~~--~~------~~~~~i~~v~q~~~~~~~~~~ 96 (254)
T PRK10418 27 QRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK--PVAP--CA------LRGRKIATIMQNPRSAFNPLH 96 (254)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCe--eccc--cc------cccceEEEEecCCccccCccc
Confidence 4789999999999999999999999987510 02456766652 2210 00 112468999998532 33457
Q ss_pred cHHHHHHHHHhhhh----HHHHhcc-----HHH---HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 252 KVMEWVAAEEKYKQ----EVQMKNI-----LPA---VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 252 tV~eni~~~~~~~~----~~~~~~~-----L~~---la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
++.+|+.......+ ....... +.. +.++.+.+||+|+ .+|+||+||||++ +|+...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~ 176 (254)
T PRK10418 97 TMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQ 176 (254)
T ss_pred cHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHH
Confidence 88888765432111 1111111 111 3466678999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 308 VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+.++|..+.++ |.+||++||..
T Consensus 177 ~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 177 ARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHHHHHHHHHHhcCcEEEEEecCH
Confidence 9999999998764 77887777764
No 233
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.7e-16 Score=157.84 Aligned_cols=149 Identities=14% Similarity=0.161 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc-c-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI-V-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~-~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++. . ...|+|.+++. ++... . .......+.+++++|++. ++ ..
T Consensus 30 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~~~~~-~---~~~~~~~~~i~~~~q~~~-~~-~~ 101 (253)
T PRK14261 30 PKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGE--NIMDS-G---ADVVALRRKIGMVFQRPN-PF-PK 101 (253)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCE--Ecccc-c---cchhhhhceEEEEecCCc-cC-cc
Confidence 478999999999999999999999987521 1 12467887763 22110 0 000011246899999743 33 35
Q ss_pred cHHHHHHHHHhhhh---HHH----Hhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EVQ----MKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~~----~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.+.....+ ... .... +....++.+.+||+|+ .+|+||+||||++ +|
T Consensus 102 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD 181 (253)
T PRK14261 102 SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALD 181 (253)
T ss_pred cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 99999987644221 100 1111 1223456677899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|..+.+ +.+||++||..
T Consensus 182 ~~~~~~l~~~l~~~~~-~~tvii~sh~~ 208 (253)
T PRK14261 182 PIATAKIEDLIEDLKK-EYTVIIVTHNM 208 (253)
T ss_pred HHHHHHHHHHHHHHhh-CceEEEEEcCH
Confidence 9999999999999876 46666666653
No 234
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=1.8e-16 Score=148.47 Aligned_cols=147 Identities=18% Similarity=0.166 Sum_probs=107.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHH---HHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKI---NEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v---~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
+.|+.+.|.||+|+|||+|++.+.-+..| .+|.-.|..+.|...- .+.+..+ ++.+|+|||+ ..+.+.
T Consensus 26 ~~getlvllgpsgagkssllr~lnlle~p-~sg~l~ia~~~fd~s~~~~~k~i~~l-------r~~vgmvfqq-y~lwph 96 (242)
T COG4161 26 PEGETLVLLGPSGAGKSSLLRVLNLLEMP-RSGTLNIAGNHFDFSKTPSDKAIRDL-------RRNVGMVFQQ-YNLWPH 96 (242)
T ss_pred CCCCEEEEECCCCCchHHHHHHHHHHhCC-CCCeEEecccccccccCccHHHHHHH-------HHhhhhhhhh-hccCch
Confidence 46899999999999999999999766544 2444444334442111 1223333 3568999997 578889
Q ss_pred CcHHHHHHHH-HhhhhHH------HH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 251 SKVMEWVAAE-EKYKQEV------QM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 251 ~tV~eni~~~-~~~~~~~------~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+||.||+... .+..+.. +. .-.+...|++++..||||| .+|.+|+||||++ +||.-
T Consensus 97 ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpei 176 (242)
T COG4161 97 LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEI 176 (242)
T ss_pred hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHH
Confidence 9999998653 3333211 11 1234678999999999997 7999999999998 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
...+..++++|...|++-|+.+|
T Consensus 177 taqvv~iikel~~tgitqvivth 199 (242)
T COG4161 177 TAQIVSIIKELAETGITQVIVTH 199 (242)
T ss_pred HHHHHHHHHHHHhcCceEEEEEe
Confidence 99999999999999996544445
No 235
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.66 E-value=1.8e-16 Score=175.89 Aligned_cols=147 Identities=20% Similarity=0.198 Sum_probs=104.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.++| . .|.|.+++. ++...... ...+..+++++|+. .+++.+||
T Consensus 22 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~~~~~~-----~~~~~~i~~v~q~~-~~~~~~tv 90 (491)
T PRK10982 22 RPHSIHALMGENGAGKSTLLKCLFGIYQK-D--SGSILFQGK--EIDFKSSK-----EALENGISMVHQEL-NLVLQRSV 90 (491)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC-C--ceEEEECCE--ECCCCCHH-----HHHhCCEEEEeccc-ccccCCCH
Confidence 47899999999999999999999999975 2 456666552 11100000 00124689999974 46777999
Q ss_pred HHHHHHHHh-hh----hHH----HHhccH-----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 254 MEWVAAEEK-YK----QEV----QMKNIL-----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 254 ~eni~~~~~-~~----~~~----~~~~~L-----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
.+|+.++.. .. ... .....+ ....++.+.+||||| .+|+||+||||++ +|+...
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~ 170 (491)
T PRK10982 91 MDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEV 170 (491)
T ss_pred HHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHH
Confidence 999986531 10 111 111111 223456678999997 7999999999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.+++.++.+.|.+||++||..
T Consensus 171 ~~l~~~l~~l~~~g~tvii~tH~~ 194 (491)
T PRK10982 171 NHLFTIIRKLKERGCGIVYISHKM 194 (491)
T ss_pred HHHHHHHHHHHhCCCEEEEEecCH
Confidence 999999999988888777777764
No 236
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.66 E-value=1.7e-16 Score=196.72 Aligned_cols=145 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+|||||||||++|+|.++| .. |.|.+++. ++...... .++.+|+++|+. .+++.+||
T Consensus 954 ~~Gei~aLLG~NGAGKSTLLkiLaGLl~P-ts--G~I~i~G~--dI~~~~~~-------~r~~IG~~pQ~~-~L~~~LTV 1020 (2272)
T TIGR01257 954 YENQITAFLGHNGAGKTTTLSILTGLLPP-TS--GTVLVGGK--DIETNLDA-------VRQSLGMCPQHN-ILFHHLTV 1020 (2272)
T ss_pred cCCcEEEEECCCCChHHHHHHHHhcCCCC-Cc--eEEEECCE--ECcchHHH-------HhhcEEEEecCC-cCCCCCCH
Confidence 56899999999999999999999999986 33 55655552 22211111 124689999973 56778999
Q ss_pred HHHHHHHHhhhhH--H----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--V----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~--~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+||+.+..+.++. . .... .+...+++.+.+||||| .+|+||+||||++ +|+..+..+
T Consensus 1021 ~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l 1100 (2272)
T TIGR01257 1021 AEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI 1100 (2272)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 9999987654321 1 1111 23455677888999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCCc
Q 007851 311 SGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
.++|+++. +|.+||+|||...
T Consensus 1101 ~~lL~~l~-~g~TIIltTHdmd 1121 (2272)
T TIGR01257 1101 WDLLLKYR-SGRTIIMSTHHMD 1121 (2272)
T ss_pred HHHHHHHh-CCCEEEEEECCHH
Confidence 99999994 5887777777653
No 237
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.9e-16 Score=176.38 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=105.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCC--CCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWIT--NLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~--~~~~~ 250 (587)
.+|+.++|+|+||||||||+++|+|.++++ .+|.|.+++. ++... ... ..+..++|++|++. .+++.
T Consensus 286 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~--~~G~i~~~g~--~~~~~~~~~------~~~~~i~~v~q~~~~~~~~~~ 355 (506)
T PRK13549 286 RRGEILGIAGLVGAGRTELVQCLFGAYPGR--WEGEIFIDGK--PVKIRNPQQ------AIAQGIAMVPEDRKRDGIVPV 355 (506)
T ss_pred cCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCcEEEECCE--ECCCCCHHH------HHHCCCEEeCcchhhCCCcCC
Confidence 578999999999999999999999998732 2456666552 22100 000 01245899999753 46677
Q ss_pred CcHHHHHHHHHh--hh-----hH----HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 251 SKVMEWVAAEEK--YK-----QE----VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 251 ~tV~eni~~~~~--~~-----~~----~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+||.+|+.++.. .. .. ..... .+. ..+++.+.+||||| .+|+||+||||++
T Consensus 356 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~ 435 (506)
T PRK13549 356 MGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRG 435 (506)
T ss_pred CCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 999999986531 10 11 01111 122 23566678999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.....+.++|..+.++|.+||++||..
T Consensus 436 LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~ 465 (506)
T PRK13549 436 IDVGAKYEIYKLINQLVQQGVAIIVISSEL 465 (506)
T ss_pred cCHhHHHHHHHHHHHHHHCCCEEEEECCCH
Confidence 999999999999999988888888888864
No 238
>PLN03211 ABC transporter G-25; Provisional
Probab=99.66 E-value=5.3e-16 Score=177.59 Aligned_cols=145 Identities=17% Similarity=0.196 Sum_probs=106.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|..++. ..+|.|.+++. ++.. . ..+.+++++|+ ..+++.+||
T Consensus 92 ~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~-~~sG~I~inG~--~~~~---~-------~~~~i~yv~Q~-~~l~~~lTV 157 (659)
T PLN03211 92 SPGEILAVLGPSGSGKSTLLNALAGRIQGN-NFTGTILANNR--KPTK---Q-------ILKRTGFVTQD-DILYPHLTV 157 (659)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCC-ceeEEEEECCE--ECch---h-------hccceEEECcc-cccCCcCCH
Confidence 578999999999999999999999998742 12577877763 2111 1 12357999997 456667999
Q ss_pred HHHHHHHHhhh-----hHHH----Hhcc-----HHHHHh-----HhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 254 MEWVAAEEKYK-----QEVQ----MKNI-----LPAVAD-----KFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~~-----~~~~----~~~~-----L~~la~-----~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
+||+.+....+ ...+ .... +...++ .....||||| .+|+||+||||++ +
T Consensus 158 ~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgL 237 (659)
T PLN03211 158 RETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGL 237 (659)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 99998864321 0111 1111 222222 2345799997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
|...+..+.++++.+.++|.+||+|+|.+.
T Consensus 238 D~~~~~~l~~~L~~l~~~g~TvI~~sH~~~ 267 (659)
T PLN03211 238 DATAAYRLVLTLGSLAQKGKTIVTSMHQPS 267 (659)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCC
Confidence 999999999999999888889888888764
No 239
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=8.7e-16 Score=155.69 Aligned_cols=149 Identities=13% Similarity=0.092 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+||||||||+++|+|..++ +. ...|.|.+.+. .+... .......++.++|++|++. +++ .
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~--~i~~~----~~~~~~~~~~i~~v~q~~~-~~~-~ 100 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI--DVYSV----DTNVVLLRAKVGMVFQKPN-PFP-K 100 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCE--ehHhc----ccchHHHhhhEEEEecCcc-ccc-C
Confidence 47899999999999999999999999752 11 13466777652 22110 0000011246899999742 333 5
Q ss_pred cHHHHHHHHHhhhh------H--HHHhccHH---------HHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 252 KVMEWVAAEEKYKQ------E--VQMKNILP---------AVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 252 tV~eni~~~~~~~~------~--~~~~~~L~---------~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
|+.+|+.+.....+ . ......+. ...+..+.+||+|+ .+|+||+||||++ +
T Consensus 101 tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~L 180 (251)
T PRK14244 101 SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSAL 180 (251)
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 99999987532211 0 00111111 12345567899997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+.....+.++|..+. +|.+||++||..
T Consensus 181 D~~~~~~l~~~l~~~~-~~~tiiiisH~~ 208 (251)
T PRK14244 181 DPVATNVIENLIQELK-KNFTIIVVTHSM 208 (251)
T ss_pred CHHHHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence 9999999999999985 477777777753
No 240
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=160.74 Aligned_cols=148 Identities=14% Similarity=0.155 Sum_probs=100.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++.. ...|.|.+++. ++... .......++.+++++|+.. +++ .
T Consensus 63 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~--~i~~~----~~~~~~~~~~i~~v~q~~~-l~~-~ 134 (285)
T PRK14254 63 PENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGK--NVYDA----DVDPVALRRRIGMVFQKPN-PFP-K 134 (285)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCE--Ecccc----ccchHhhhccEEEEecCCc-cCc-C
Confidence 5789999999999999999999999986310 13467777652 22110 0000011346899999743 333 5
Q ss_pred cHHHHHHHHHhhhh-----HHHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYKQ-----EVQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~~-----~~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
||.+|+.+.....+ ....... +....++.+.+||+|+ .+|+||+||||++ +|+.
T Consensus 135 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~ 214 (285)
T PRK14254 135 SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPV 214 (285)
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHH
Confidence 99999987543211 0011111 1233456677999997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
....+.++|..+.++ .+||++||.
T Consensus 215 ~~~~l~~~L~~~~~~-~tiii~tH~ 238 (285)
T PRK14254 215 ATSKIEDLIEELAEE-YTVVIVTHN 238 (285)
T ss_pred HHHHHHHHHHHHhcC-CEEEEEeCC
Confidence 999999999999765 566666665
No 241
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=159.50 Aligned_cols=149 Identities=12% Similarity=0.135 Sum_probs=101.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.++ +.....|.|.+++. ++...-.. .....+.++|++|++. + +..
T Consensus 48 ~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~--~~~~~~~~----~~~~~~~i~~v~q~~~-~-~~~ 119 (271)
T PRK14238 48 HENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ--NIFDKSYS----VEELRTNVGMVFQKPN-P-FPK 119 (271)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCE--Eccccccc----HHHHhhhEEEEecCCc-c-ccc
Confidence 5789999999999999999999999986 20013456766652 22100000 0011246899999743 3 346
Q ss_pred cHHHHHHHHHhhhh---HHH----Hhc---------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EVQ----MKN---------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~~----~~~---------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.++..... ... ... .+....+..+.+||+|+ .+|+|||||||+. +|
T Consensus 120 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD 199 (271)
T PRK14238 120 SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALD 199 (271)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCC
Confidence 99999987543211 000 011 12233455677899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|..+.+ +.+||++||..
T Consensus 200 ~~~~~~l~~~l~~~~~-~~tiiivsH~~ 226 (271)
T PRK14238 200 PISTLKVEELVQELKK-DYSIIIVTHNM 226 (271)
T ss_pred HHHHHHHHHHHHHHHc-CCEEEEEEcCH
Confidence 9999999999999865 67777777753
No 242
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.66 E-value=1.2e-16 Score=151.99 Aligned_cols=156 Identities=16% Similarity=0.132 Sum_probs=108.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHH--HHHHHH-HHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML--KINEHM-HRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~--~v~~~l-~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
..|..+.|+|.+||||||+++||.-+..| ..|.++|.....-. +-+..+ ..-+++....+...++|||+ .+++..
T Consensus 30 ~~GdVisIIGsSGSGKSTfLRCiN~LE~P-~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~-FNLWsH 107 (256)
T COG4598 30 NAGDVISIIGSSGSGKSTFLRCINFLEKP-SAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQH-FNLWSH 107 (256)
T ss_pred CCCCEEEEecCCCCchhHHHHHHHhhcCC-CCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHhhhh-cchhHH
Confidence 47899999999999999999999877765 34544443322100 000000 00011112234567999998 567778
Q ss_pred CcHHHHHHHHHh-hhh--HHH---------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 251 SKVMEWVAAEEK-YKQ--EVQ---------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 251 ~tV~eni~~~~~-~~~--~~~---------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+||.||+..... ..+ +.+ ....+.+-.+.++..||||| .+|++++|||||+ |||.-
T Consensus 108 mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPEl 187 (256)
T COG4598 108 MTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPEL 187 (256)
T ss_pred HHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHH
Confidence 999999975422 111 110 12234556778889999997 6999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+..++..|.++|.|+|+.+|-+
T Consensus 188 VgEVLkv~~~LAeEgrTMv~VTHEM 212 (256)
T COG4598 188 VGEVLKVMQDLAEEGRTMVVVTHEM 212 (256)
T ss_pred HHHHHHHHHHHHHhCCeEEEEeeeh
Confidence 9999999999999999877777743
No 243
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.66 E-value=3.9e-16 Score=176.64 Aligned_cols=142 Identities=14% Similarity=0.140 Sum_probs=97.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+|++|||||||++++.|.. | .+ |.|.+++. ++.+ +. ....++.+++|+|+ +.+++.|+
T Consensus 374 ~~G~~vaIvG~SGsGKSTL~~lL~g~~-p-~~--G~I~i~g~--~i~~----~~--~~~lr~~i~~v~Q~--~~LF~~TI 439 (588)
T PRK11174 374 PAGQRIALVGPSGAGKTSLLNALLGFL-P-YQ--GSLKINGI--ELRE----LD--PESWRKHLSWVGQN--PQLPHGTL 439 (588)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC-C-CC--cEEEECCE--eccc----CC--HHHHHhheEEecCC--CcCCCcCH
Confidence 579999999999999999999999999 5 34 45655552 2211 00 01123568999996 57788999
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+|||.++.......+. ...+.+...++ ...||||| ++|+||+|||||+ +|..
T Consensus 440 ~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 440 RDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 9999987432111111 11122222222 24799997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+..+.+.+.++.+ +.|+|+.+|+
T Consensus 520 te~~i~~~l~~~~~-~~TvIiItHr 543 (588)
T PRK11174 520 SEQLVMQALNAASR-RQTTLMVTHQ 543 (588)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEecC
Confidence 99999999988864 4555444554
No 244
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.66 E-value=2.5e-16 Score=175.00 Aligned_cols=149 Identities=15% Similarity=0.141 Sum_probs=105.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC--CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT--NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~--~~~~~~ 251 (587)
.+|+.++|+||||||||||+++++|.++|+ ..|.|.+++. ++... ... ...++.+++++|+.. .+++.+
T Consensus 284 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~--~~G~i~~~g~--~~~~~-~~~----~~~~~~i~~v~q~~~~~~l~~~~ 354 (500)
T TIGR02633 284 RRGEILGVAGLVGAGRTELVQALFGAYPGK--FEGNVFINGK--PVDIR-NPA----QAIRAGIAMVPEDRKRHGIVPIL 354 (500)
T ss_pred eCCcEEEEeCCCCCCHHHHHHHHhCCCCCC--CCeEEEECCE--ECCCC-CHH----HHHhCCCEEcCcchhhCCcCCCC
Confidence 568999999999999999999999999742 2466776652 11100 000 011246899999853 467789
Q ss_pred cHHHHHHHHHh--h------hhH---HHHhccH-----H-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 252 KVMEWVAAEEK--Y------KQE---VQMKNIL-----P-AVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 252 tV~eni~~~~~--~------~~~---~~~~~~L-----~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
||.+|+.++.. . ... ......+ . ...++.+.+||||| .+|+||+||||++ +
T Consensus 355 tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~L 434 (500)
T TIGR02633 355 GVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGV 434 (500)
T ss_pred CHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCc
Confidence 99999976421 1 000 0111112 1 12455677999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.+++..+.+.|.+||++||..
T Consensus 435 D~~~~~~l~~~l~~l~~~g~tviivsHd~ 463 (500)
T TIGR02633 435 DVGAKYEIYKLINQLAQEGVAIIVVSSEL 463 (500)
T ss_pred CHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 99999999999999988888888888864
No 245
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7e-16 Score=156.28 Aligned_cols=149 Identities=15% Similarity=0.140 Sum_probs=100.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|..++ +. ..++.|.+++. ++....... ...++.+++++|+. . ++..
T Consensus 28 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~--~~~~~~~~~----~~~~~~i~~~~q~~-~-~~~~ 99 (251)
T PRK14251 28 EEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ--NIYGSKMDL----VELRKEVGMVFQQP-T-PFPF 99 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCE--EcccccchH----HHhhccEEEEecCC-c-cCCC
Confidence 47899999999999999999999999862 10 12466766652 221000000 01124689999974 2 3357
Q ss_pred cHHHHHHHHHhhhh---H----HHHhcc-----H----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---E----VQMKNI-----L----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~----~~~~~~-----L----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.+.....+ . ...... + ...++..+.+||+|+ .+|+||+||||++ +|
T Consensus 100 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD 179 (251)
T PRK14251 100 SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALD 179 (251)
T ss_pred cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCC
Confidence 99999987543211 0 011111 1 123456677999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.+++.++.+ +.+||++||..
T Consensus 180 ~~~~~~l~~~l~~~~~-~~tiiiisH~~ 206 (251)
T PRK14251 180 PISSSEIEETLMELKH-QYTFIMVTHNL 206 (251)
T ss_pred HHHHHHHHHHHHHHHc-CCeEEEEECCH
Confidence 9999999999999854 56666666653
No 246
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.5e-16 Score=175.14 Aligned_cols=146 Identities=20% Similarity=0.179 Sum_probs=103.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.+++. ++... ... ..++.++|++|+. .+++.+|
T Consensus 28 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~--~G~I~~~g~--~i~~~~~~~------~~~~~i~~v~q~~-~~~~~~t 95 (501)
T PRK11288 28 RAGQVHALMGENGAGKSTLLKILSGNYQP-D--AGSILIDGQ--EMRFASTTA------ALAAGVAIIYQEL-HLVPEMT 95 (501)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CCEEEECCE--ECCCCCHHH------HHhCCEEEEEech-hccCCCC
Confidence 47899999999999999999999999875 2 355666542 11100 000 1124689999973 5667799
Q ss_pred HHHHHHHHHh--hhh---HH----HHhccH-----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 253 VMEWVAAEEK--YKQ---EV----QMKNIL-----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 253 V~eni~~~~~--~~~---~~----~~~~~L-----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
|.+|+.++.. ..+ .. .....+ ....++.+.+||||| .+|+||+||||++ +|+..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (501)
T PRK11288 96 VAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSARE 175 (501)
T ss_pred HHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHH
Confidence 9999987531 100 11 111111 122456678999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+.++|..+.+.|.+||++||..
T Consensus 176 ~~~l~~~l~~~~~~g~tiiiitHd~ 200 (501)
T PRK11288 176 IEQLFRVIRELRAEGRVILYVSHRM 200 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999999987787777666654
No 247
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=4.8e-16 Score=160.06 Aligned_cols=147 Identities=15% Similarity=0.179 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+|+||||||||+++|+|.+++.. ...+.|.+++. ++.. .... ...+..++|++|+.. ++ .
T Consensus 44 ~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~l~~~~~~~-----~~~~~~i~~v~q~~~-l~-~ 114 (274)
T PRK14265 44 PAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDR--NIYDSQINS-----VKLRRQVGMVFQRPN-PF-P 114 (274)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCE--ecccccchh-----HHHhhcEEEEccCCc-cc-c
Confidence 5789999999999999999999999975311 12467777662 2210 0000 011246899999743 33 4
Q ss_pred CcHHHHHHHHHhhhh-----HHHHhc---------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 251 SKVMEWVAAEEKYKQ-----EVQMKN---------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 251 ~tV~eni~~~~~~~~-----~~~~~~---------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
.|+.+|+.+...... ...... .+....++.+.+||+|+ .+|+|||||||+. +|+
T Consensus 115 ~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~ 194 (274)
T PRK14265 115 KSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDP 194 (274)
T ss_pred ccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 599999987542211 000010 11234456667899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.....+.++|..+.+ +.+||++||.
T Consensus 195 ~~~~~l~~~L~~~~~-~~tiii~sH~ 219 (274)
T PRK14265 195 ISTRQVEELCLELKE-QYTIIMVTHN 219 (274)
T ss_pred HHHHHHHHHHHHHhc-CCEEEEEeCC
Confidence 999999999999965 5666666664
No 248
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.65 E-value=4.2e-16 Score=176.11 Aligned_cols=143 Identities=17% Similarity=0.201 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+|+||||||||+++++|..+| .+|+|.+++- ++.. +.. ...++.+++++|+ ..+++.|+
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~p---~~G~I~i~g~--~i~~-~~~-----~~~~~~i~~v~Q~--~~lf~~Ti 433 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYDI---DEGEILLDGH--DLRD-YTL-----ASLRNQVALVSQN--VHLFNDTI 433 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccCC---CCceEEECCE--Ehhh-cCH-----HHHHhhceEEccC--ceeecchH
Confidence 57899999999999999999999999986 3466777762 2221 100 0113468999997 56778999
Q ss_pred HHHHHHHHhh-hhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEEKY-KQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~~~-~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++||.++... ....+.. ..+.+....+ ..+||||| ++|+||+|||||+ +|+
T Consensus 434 ~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~ 513 (582)
T PRK11176 434 ANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513 (582)
T ss_pred HHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCH
Confidence 9999975321 1111111 1122222222 23699997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
..+..+.+.+..+.+. .++|+.||+
T Consensus 514 ~t~~~i~~~l~~~~~~-~tvI~VtHr 538 (582)
T PRK11176 514 ESERAIQAALDELQKN-RTSLVIAHR 538 (582)
T ss_pred HHHHHHHHHHHHHhCC-CEEEEEecc
Confidence 9999999999888654 555555555
No 249
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.9e-16 Score=158.41 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=99.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|..++.. ...+.|++++. ++... .......++.+++++|+. .++ ..
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~--~i~~~----~~~~~~~~~~i~~v~q~~-~~~-~~ 105 (264)
T PRK14243 34 PKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGK--NLYAP----DVDPVEVRRRIGMVFQKP-NPF-PK 105 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCE--Ecccc----ccChHHHhhhEEEEccCC-ccc-cc
Confidence 5789999999999999999999999875210 13467777652 22100 000001134689999974 233 35
Q ss_pred cHHHHHHHHHhhhh---H--HHHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYKQ---E--VQMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~~---~--~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+.+|+.++....+ . ...... +....++.+.+||+|| .+|+||+||||++ +|+.
T Consensus 106 tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~ 185 (264)
T PRK14243 106 SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPI 185 (264)
T ss_pred cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHH
Confidence 99999987543211 0 001111 1223455667899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
....+.++|..+.+. .+||++||.
T Consensus 186 ~~~~l~~~L~~~~~~-~tvi~vtH~ 209 (264)
T PRK14243 186 STLRIEELMHELKEQ-YTIIIVTHN 209 (264)
T ss_pred HHHHHHHHHHHHhcC-CEEEEEecC
Confidence 999999999999764 566666665
No 250
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.65 E-value=4.8e-16 Score=152.61 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=89.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc--CCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l--~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+||||||||+++++|.. ++ ..++|.|++. ++...-... ..+..+++++|.+ ..++..
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p---~~G~i~~~g~--~~~~~~~~~-----~~~~~i~~v~q~~-~~~~~~ 92 (200)
T cd03217 24 KKGEVHALMGPNGSGKSTLAKTIMGHPKYEV---TEGEILFKGE--DITDLPPEE-----RARLGIFLAFQYP-PEIPGV 92 (200)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcCCC---CccEEEECCE--ECCcCCHHH-----HhhCcEEEeecCh-hhccCc
Confidence 478999999999999999999999985 43 3456776652 211100000 0123588999863 445567
Q ss_pred cHHHHHHHHH-hhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 252 KVMEWVAAEE-KYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 252 tV~eni~~~~-~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
++.+++.... ...+.. .. --.++..++ .+|+||++|||+. +|+..+..+.+++.++.++|.+||++||
T Consensus 93 ~~~~~l~~~~~~LS~G~--~q-rv~laral~-------~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh 162 (200)
T cd03217 93 KNADFLRYVNEGFSGGE--KK-RNEILQLLL-------LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITH 162 (200)
T ss_pred cHHHHHhhccccCCHHH--HH-HHHHHHHHh-------cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 7777652110 000000 00 011233333 6999999999998 9999999999999999877887777777
Q ss_pred CC
Q 007851 330 RA 331 (587)
Q Consensus 330 ~~ 331 (587)
..
T Consensus 163 ~~ 164 (200)
T cd03217 163 YQ 164 (200)
T ss_pred CH
Confidence 63
No 251
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.65 E-value=4e-16 Score=172.95 Aligned_cols=146 Identities=20% Similarity=0.156 Sum_probs=101.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCC----
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLP---- 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~---- 248 (587)
.+|+.++|+||||||||||+++++|.+++ .. |.|.+++. ++.. .... ..+.+++++|+....+
T Consensus 27 ~~Ge~~~liG~nGsGKSTLl~~l~G~~~p-~~--G~i~~~~~--~~~~~~~~~-------~~~~i~~~~q~~~~~~~~~~ 94 (490)
T PRK10938 27 NAGDSWAFVGANGSGKSALARALAGELPL-LS--GERQSQFS--HITRLSFEQ-------LQKLVSDEWQRNNTDMLSPG 94 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccCCC-CC--ceEEECCc--ccccCCHHH-------HHHHhceeccCcchhhcccc
Confidence 47899999999999999999999999975 33 45555431 1110 0001 1134788888643211
Q ss_pred ---CCCcHHHHHHHHHhhhhHH-H--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 249 ---FDSKVMEWVAAEEKYKQEV-Q--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 249 ---~~~tV~eni~~~~~~~~~~-~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+.+++.+|+.......... . ....+....++.+.+||||| .+|++|+||||++ +|+..+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 95 EDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred hhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 2578888875431111100 0 11234556788889999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|.++.++|.+||++||..
T Consensus 175 ~~~l~~~~~~g~tvii~tH~~ 195 (490)
T PRK10938 175 AELLASLHQSGITLVLVLNRF 195 (490)
T ss_pred HHHHHHHHhcCCeEEEEeCCH
Confidence 999999988787777777754
No 252
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.65 E-value=1.3e-15 Score=154.42 Aligned_cols=153 Identities=11% Similarity=0.098 Sum_probs=102.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhH-HH--HHHHHHHHhhhhhhcccceeeeeccCC-CCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM-LK--INEHMHRLWKNQVAEKSLRSSISGWIT-NLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm-~~--v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~ 249 (587)
.+|+.++|.||||||||||+++++|..++ . .|.|.+++.- .. +.. ... ........+.+++++|+.. ...+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~-~--~G~i~~~g~~~~~~~~~~-~~~-~~~~~~~~~~i~~~~q~~~~~~~~ 101 (253)
T TIGR02323 27 YPGEVLGIVGESGSGKSTLLGCLAGRLAP-D--HGTATYIMRSGAELELYQ-LSE-AERRRLMRTEWGFVHQNPRDGLRM 101 (253)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEEeccccccccccc-CCH-HHHHHhhhcceEEEEeCcccccCc
Confidence 47899999999999999999999999875 2 3566666521 00 110 000 0000001245899999743 2445
Q ss_pred CCcHHHHHHHHHh-h----hhH--HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 250 DSKVMEWVAAEEK-Y----KQE--VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 250 ~~tV~eni~~~~~-~----~~~--~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
..++.+|+.+... . ... ..... .+. ...++.+.+||||+ .+|++|+||||++ +|+
T Consensus 102 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~ 181 (253)
T TIGR02323 102 RVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 181 (253)
T ss_pred cccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 5788888864321 0 000 01111 121 34566678999997 7999999999998 999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.....+.++|..+.++ |.+||++||..
T Consensus 182 ~~~~~l~~~l~~~~~~~~~tii~vsH~~ 209 (253)
T TIGR02323 182 SVQARLLDLLRGLVRDLGLAVIIVTHDL 209 (253)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999999998764 78877777764
No 253
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=7.2e-16 Score=169.07 Aligned_cols=145 Identities=16% Similarity=0.175 Sum_probs=102.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.+.|+|+||||||||++++.|.+++ . .|.|.+++. +....-...+ ++.+++|.|+ +.++.-|
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~-~--~G~I~vng~--~l~~l~~~~~------~k~i~~v~Q~--p~lf~gT 410 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAP-T--QGEIRVNGI--DLRDLSPEAW------RKQISWVSQN--PYLFAGT 410 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCC-C--CceEEECCc--cccccCHHHH------HhHeeeeCCC--Ccccccc
Confidence 357899999999999999999999999986 3 356666763 2211111111 2468899885 6788999
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHh----------HhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVAD----------KFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~----------~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
++||+.++.......+. ...+.++.+ +-...||||| .+++|++|||||+ +|+.
T Consensus 411 ireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~e 490 (559)
T COG4988 411 IRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490 (559)
T ss_pred HHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHh
Confidence 99999887543222111 112222222 2223599997 6899999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..++.+.+.++.+.. ++++.||+.
T Consensus 491 tE~~i~~~l~~l~~~k-tvl~itHrl 515 (559)
T COG4988 491 TEQIILQALQELAKQK-TVLVITHRL 515 (559)
T ss_pred HHHHHHHHHHHHHhCC-eEEEEEcCh
Confidence 9999999999998874 444555553
No 254
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=9.7e-16 Score=158.77 Aligned_cols=149 Identities=12% Similarity=0.117 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..+ +.....|.|.+++. .+....... ...++.++|++|++. ++ ..
T Consensus 63 ~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~--~i~~~~~~~----~~~~~~i~~v~q~~~-l~-~~ 134 (286)
T PRK14275 63 LSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGE--DIYGKFTDE----VLLRKKIGMVFQKPN-PF-PK 134 (286)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCE--Ehhhcccch----HHhhhcEEEECCCCC-CC-cc
Confidence 5799999999999999999999999753 20013467777662 221100000 011346899999753 33 35
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||.+|+.++....+ .. ..... +....++.+.+||||| .+|+||+||||+. +|
T Consensus 135 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD 214 (286)
T PRK14275 135 SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALD 214 (286)
T ss_pred CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99999987643211 00 01111 1234456678999997 7999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.+++..+.. +.+||++||..
T Consensus 215 ~~~~~~l~~~L~~~~~-~~tvIivsH~~ 241 (286)
T PRK14275 215 PKATAKIEDLIQELRG-SYTIMIVTHNM 241 (286)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 9999999999999865 56677777753
No 255
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.65 E-value=5.6e-16 Score=175.55 Aligned_cols=143 Identities=17% Similarity=0.176 Sum_probs=101.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+|+||||||||+++++|..+| .+|.|.+++. ++..- ... .++.+++++|+ +.+++.
T Consensus 364 i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p---~~G~I~idg~--~i~~~~~~~-------l~~~i~~v~Q~--~~lF~~ 429 (592)
T PRK10790 364 VPSRGFVALVGHTGSGKSTLASLLMGYYPL---TEGEIRLDGR--PLSSLSHSV-------LRQGVAMVQQD--PVVLAD 429 (592)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccCC---CCceEEECCE--EhhhCCHHH-------HHhheEEEccC--Cccccc
Confidence 357999999999999999999999999986 3456777762 33210 111 23578999996 467788
Q ss_pred cHHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+++||.++... ...+. ...+.+..+++ ..+||||| .+|+||+||||++ +|
T Consensus 430 Ti~~NI~~~~~~-~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD 508 (592)
T PRK10790 430 TFLANVTLGRDI-SEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANID 508 (592)
T ss_pred hHHHHHHhCCCC-CHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCC
Confidence 999999986421 11111 11122222222 24699997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
......+.+.+..+.+. .++|+.||+.
T Consensus 509 ~~t~~~i~~~l~~~~~~-~tvIivtHr~ 535 (592)
T PRK10790 509 SGTEQAIQQALAAVREH-TTLVVIAHRL 535 (592)
T ss_pred HHHHHHHHHHHHHHhCC-CEEEEEecch
Confidence 99999999999988654 5555555653
No 256
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.3e-16 Score=157.40 Aligned_cols=150 Identities=20% Similarity=0.174 Sum_probs=102.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+||||||||+++++|..++. +...+.|.+++. ++... . ......+..+++++|++. +++ .
T Consensus 31 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~--~i~~~--~--~~~~~~~~~i~~~~q~~~-l~~-~ 102 (261)
T PRK14258 31 YQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ--NIYER--R--VNLNRLRRQVSMVHPKPN-LFP-M 102 (261)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCE--Ehhcc--c--cchHHhhccEEEEecCCc-cCc-c
Confidence 578999999999999999999999998741 001356666652 22100 0 000011346899998743 344 8
Q ss_pred cHHHHHHHHHhhhh---HHH----Hhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EVQ----MKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~~----~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.||+.+.....+ ... .... +....++.+.+||+|| .+|+||+||||+. +|
T Consensus 103 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD 182 (261)
T PRK14258 103 SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLD 182 (261)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 99999986532211 000 1111 1223456667899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
+.....+.++|.++.+ .|.+||++||..
T Consensus 183 ~~~~~~l~~~l~~l~~~~~~tiiivsH~~ 211 (261)
T PRK14258 183 PIASMKVESLIQSLRLRSELTMVIVSHNL 211 (261)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 9999999999999865 477777777764
No 257
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.65 E-value=5.8e-16 Score=172.09 Aligned_cols=148 Identities=19% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.+++. ...|.|.+++. ++.. ..... .+..++|++|+. .+++.+|
T Consensus 25 ~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~-~~~G~i~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~~~~~~t 94 (500)
T TIGR02633 25 RPGECVGLCGENGAGKSTLMKILSGVYPHG-TWDGEIYWSGS--PLKASNIRDT------ERAGIVIIHQEL-TLVPELS 94 (500)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CCCeEEEECCE--ECCCCCHHHH------HhCCEEEEeecc-ccCCCCc
Confidence 478999999999999999999999998741 12466766652 1110 00000 124689999974 4667799
Q ss_pred HHHHHHHHHhhh------hHH----HHhccHHH-----HH-hHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYK------QEV----QMKNILPA-----VA-DKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~------~~~----~~~~~L~~-----la-~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|.+|+.++.... ... .....+.. .. ++.+.+||||| .+|+||+||||++ +|+
T Consensus 95 v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~ 174 (500)
T TIGR02633 95 VAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTE 174 (500)
T ss_pred HHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 999998754211 011 11111211 12 34578999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.++|.++.++|.+||++||..
T Consensus 175 ~~~~~l~~~l~~l~~~g~tviiitHd~ 201 (500)
T TIGR02633 175 KETEILLDIIRDLKAHGVACVYISHKL 201 (500)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 999999999999988888776666653
No 258
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.65 E-value=8.4e-16 Score=172.03 Aligned_cols=149 Identities=13% Similarity=0.120 Sum_probs=106.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCC-CCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWIT-NLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~-~~~~~ 250 (587)
..+|+.++|+||||||||||+++++|.++ .+ |.|.+++. ++... .... ...+..++|++|++. .+++.
T Consensus 309 i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--~~--G~i~~~g~--~i~~~~~~~~----~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 309 LRPGETLGLVGESGSGKSTTGLALLRLIN--SQ--GEIWFDGQ--PLHNLNRRQL----LPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCC--CC--cEEEECCE--EccccchhhH----HHhhhceEEEEeCchhhcCCc
Confidence 35789999999999999999999999985 23 56666652 22110 0000 011245899999853 46677
Q ss_pred CcHHHHHHHHHhhh----hH----HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 251 SKVMEWVAAEEKYK----QE----VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 251 ~tV~eni~~~~~~~----~~----~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+||.+|+.++.... .. ..... .+. ..+++.+.+||||| .+|+||+||||++ +|+
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 89999998764321 00 11111 222 35677788999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+..+.++|..+.++ |.+||++||..
T Consensus 459 ~~~~~l~~~l~~~~~~~~~tvi~vsHd~ 486 (529)
T PRK15134 459 TVQAQILALLKSLQQKHQLAYLFISHDL 486 (529)
T ss_pred HHHHHHHHHHHHHHHhhCCEEEEEeCCH
Confidence 9999999999999875 77777777764
No 259
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.65 E-value=3.5e-16 Score=173.94 Aligned_cols=148 Identities=17% Similarity=0.178 Sum_probs=105.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC--CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT--NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~--~~~~~~ 251 (587)
.+|+.++|+|||||||||||++++|.++| . +|.|.+++. ++...-.. ...+..++|++|++. .+++.+
T Consensus 276 ~~Ge~~~liG~NGsGKSTLl~~l~G~~~p-~--~G~I~~~g~--~i~~~~~~-----~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 276 RKGEILGVSGLMGAGRTELMKVLYGALPR-T--SGYVTLDGH--EVVTRSPQ-----DGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred cCCcEEEEecCCCCCHHHHHHHHhCCCCC-C--ceEEEECCE--ECCCCCHH-----HHHHCCCEEecCccccCCCcCCC
Confidence 56899999999999999999999999975 2 356666542 11100000 001246899999853 467789
Q ss_pred cHHHHHHHHHh--h-------hh-H--HHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 252 KVMEWVAAEEK--Y-------KQ-E--VQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 252 tV~eni~~~~~--~-------~~-~--~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
||.+|+.++.. . .. . ..... .+. ..+++.+.+||||| .+|+||+||||++
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 99999986421 0 00 0 01111 121 23566778999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+..+..+.++|..+.++|.+||++||..
T Consensus 426 LD~~~~~~l~~~l~~~~~~g~tviivtHd~ 455 (501)
T PRK10762 426 VDVGAKKEIYQLINQFKAEGLSIILVSSEM 455 (501)
T ss_pred CCHhHHHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 999999999999999988888777777763
No 260
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.7e-16 Score=156.30 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+|||||||||++|+|... +.....+.|.+++. ++... ........+.++|++|++ .+ +..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~--~i~~~----~~~~~~~~~~i~~~~q~~-~~-~~~ 98 (250)
T PRK14266 27 PKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGV--DIYDP----AVDVVELRKKVGMVFQKP-NP-FPK 98 (250)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCE--Ecccc----cccHHHHhhheEEEecCC-cc-Ccc
Confidence 4789999999999999999999999864 20013456776662 22110 000001134689999974 23 346
Q ss_pred cHHHHHHHHHhhhh----H-H--HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ----E-V--QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~----~-~--~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ . . ..... +....++.+.+||+|+ .+|+||+||||+. +|
T Consensus 99 t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD 178 (250)
T PRK14266 99 SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALD 178 (250)
T ss_pred hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCC
Confidence 99999986532111 0 0 01111 1233456677999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|..+.+ |.+||++||..
T Consensus 179 ~~~~~~l~~~l~~~~~-~~tiii~sh~~ 205 (250)
T PRK14266 179 PISTTKIEDLIHKLKE-DYTIVIVTHNM 205 (250)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEECCH
Confidence 9999999999999854 67776666653
No 261
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.65 E-value=8.7e-16 Score=171.90 Aligned_cols=153 Identities=14% Similarity=0.061 Sum_probs=104.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCC-CCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITN-LPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~-~~~ 249 (587)
.+|+.++|+||||||||||+++|+|.+++.. ...|.|.+++. ++... ..... ...++.+|+++|+... +.+
T Consensus 33 ~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~--~i~~~~~~~~~---~~~~~~ig~v~Q~~~~~~~~ 107 (529)
T PRK15134 33 EAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGE--SLLHASEQTLR---GVRGNKIAMIFQEPMVSLNP 107 (529)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCE--ecccCCHHHHH---HHhcCceEEEecCchhhcCc
Confidence 4789999999999999999999999997510 12466776652 22110 00000 0012468999998532 455
Q ss_pred CCcHHHHHHHHHhhh-h--H----HHHhcc-----HH---HHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 250 DSKVMEWVAAEEKYK-Q--E----VQMKNI-----LP---AVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 250 ~~tV~eni~~~~~~~-~--~----~~~~~~-----L~---~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.+++.+|+.+..... + . ...... +. ..+++.+.+||||| .+|+||+||||++ +
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~L 187 (529)
T PRK15134 108 LHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTAL 187 (529)
T ss_pred hhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCcc
Confidence 679999987543211 1 1 111111 11 23577788999997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
|+..+..+.++|.++.++ |.+||++||..
T Consensus 188 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~ 217 (529)
T PRK15134 188 DVSVQAQILQLLRELQQELNMGLLFITHNL 217 (529)
T ss_pred CHHHHHHHHHHHHHHHHhcCCeEEEEcCcH
Confidence 999999999999999765 77766666654
No 262
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.65 E-value=9.9e-16 Score=171.05 Aligned_cols=152 Identities=13% Similarity=0.148 Sum_probs=104.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEe-h-hHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH-E-AMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~-~-fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
..+|+.++|+||||||||||+++|+|.+++ . .|.|.++ + -..++.. ... ......++.++|++|+. .+++.
T Consensus 307 i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p-~--~G~i~~~~g~~~~~~~~-~~~--~~~~~~~~~i~~v~q~~-~l~~~ 379 (520)
T TIGR03269 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEP-T--SGEVNVRVGDEWVDMTK-PGP--DGRGRAKRYIGILHQEY-DLYPH 379 (520)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CeEEEEecCCccccccc-cch--hhHHHHhhhEEEEccCc-ccCCC
Confidence 357899999999999999999999999975 2 3566663 2 1001110 000 00000123589999974 46677
Q ss_pred CcHHHHHHHHHhh--hhH---HHHhc-----cHH-----HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 251 SKVMEWVAAEEKY--KQE---VQMKN-----ILP-----AVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 251 ~tV~eni~~~~~~--~~~---~~~~~-----~L~-----~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
+||.+|+.+.... ... ..... .+. ...++.+.+||||| .+|+||+||||++ +|
T Consensus 380 ~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD 459 (520)
T TIGR03269 380 RTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459 (520)
T ss_pred CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 9999999864321 000 11111 121 24577888999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+.....+.++|..+.++ |.+||++||..
T Consensus 460 ~~~~~~l~~~l~~l~~~~g~tvi~vsHd~ 488 (520)
T TIGR03269 460 PITKVDVTHSILKAREEMEQTFIIVSHDM 488 (520)
T ss_pred HHHHHHHHHHHHHHHHHcCcEEEEEeCCH
Confidence 99999999999999764 77777777753
No 263
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.65 E-value=2.9e-16 Score=174.68 Aligned_cols=148 Identities=16% Similarity=0.197 Sum_probs=104.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC--CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT--NLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~--~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++ . .+.|.+++. ++...... ......+++++|++. .+++.+
T Consensus 277 ~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p-~--~G~i~~~g~--~~~~~~~~-----~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 277 RAGEIVGLFGLVGAGRSELMKLLYGATRR-T--AGQVYLDGK--PIDIRSPR-----DAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred eCCcEEEEEcCCCCCHHHHHHHHcCCCcC-C--CceEEECCE--ECCCCCHH-----HHHhCCCEEcCcCHhhCCCcCCC
Confidence 56899999999999999999999999975 2 356666541 11100000 001246899999752 467779
Q ss_pred cHHHHHHHHHhhh---------h-H--HHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 252 KVMEWVAAEEKYK---------Q-E--VQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 252 tV~eni~~~~~~~---------~-~--~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
|+.+|+.++.... . . ..... .+ ....++.+.+||||| .+|+||+||||++
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 9999987642110 0 0 01111 12 123566678999997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.....+.++|..+.+.|.+||++||..
T Consensus 427 LD~~~~~~l~~~l~~l~~~g~tviivsHd~ 456 (501)
T PRK11288 427 IDVGAKHEIYNVIYELAAQGVAVLFVSSDL 456 (501)
T ss_pred CCHhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 999999999999999988888777777754
No 264
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.64 E-value=6e-16 Score=159.64 Aligned_cols=142 Identities=16% Similarity=0.234 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||+|||||+++|+|.++ . . |+|.+++. ++.. .... .++.++|++|++ .++..|
T Consensus 28 ~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~-~--G~I~i~g~--~i~~~~~~~-------lr~~i~~v~q~~--~lf~~t 92 (275)
T cd03289 28 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T-E--GDIQIDGV--SWNSVPLQK-------WRKAFGVIPQKV--FIFSGT 92 (275)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhhcC-C-C--cEEEECCE--EhhhCCHHH-------HhhhEEEECCCc--ccchhh
Confidence 5789999999999999999999999986 2 3 56666652 2221 0111 134689999974 344579
Q ss_pred HHHHHHHHHhhhhH--HH--HhccHHHHHhHhhhh-----------hcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQE--VQ--MKNILPAVADKFLVD-----------QHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~~--~~--~~~~L~~la~~l~~~-----------LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+++|+......... .. ....+....+.++.. ||+|+ .+|+|||||||+. +|+.
T Consensus 93 v~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~ 172 (275)
T cd03289 93 FRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPI 172 (275)
T ss_pred HHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHH
Confidence 99999632211110 00 112234555666654 99997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.++|..++ .|.+||++||+.
T Consensus 173 ~~~~l~~~l~~~~-~~~tii~isH~~ 197 (275)
T cd03289 173 TYQVIRKTLKQAF-ADCTVILSEHRI 197 (275)
T ss_pred HHHHHHHHHHHhc-CCCEEEEEECCH
Confidence 9999999999875 477777777764
No 265
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=1.2e-15 Score=156.59 Aligned_cols=133 Identities=14% Similarity=0.035 Sum_probs=96.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ . .|.|.+++- ++++++. ....+.+|+
T Consensus 48 ~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p-~--~G~I~~~g~---------------------~~~~~~~-~~~~~~~tv 102 (264)
T PRK13546 48 YEGDVIGLVGINGSGKSTLSNIIGGSLSP-T--VGKVDRNGE---------------------VSVIAIS-AGLSGQLTG 102 (264)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcCC-C--ceEEEECCE---------------------EeEEecc-cCCCCCCcH
Confidence 57999999999999999999999999985 2 345655441 1223332 234456899
Q ss_pred HHHHHHHHhhhh--HHHH---------hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQM---------KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~~---------~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ .... ...+....+..+.+||+|| .+|+||+||||+. +|+.....+
T Consensus 103 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l 182 (264)
T PRK13546 103 IENIEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKC 182 (264)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHH
Confidence 999976432211 1110 0123344566678999997 7999999999998 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+++..+.+.|.+||++||..
T Consensus 183 ~~~L~~~~~~g~tiIiisH~~ 203 (264)
T PRK13546 183 LDKIYEFKEQNKTIFFVSHNL 203 (264)
T ss_pred HHHHHHHHHCCCEEEEEcCCH
Confidence 999999877788777777753
No 266
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.2e-15 Score=154.25 Aligned_cols=147 Identities=14% Similarity=0.138 Sum_probs=99.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++|+|..++.. ...+.|.+++. ++.... .. ...++.++|++|++. ++ ..
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~--~~~~~~-~~----~~~~~~i~~~~q~~~-~~-~~ 97 (249)
T PRK14253 27 PARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE--DIYGNI-DV----ADLRIKVGMVFQKPN-PF-PM 97 (249)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCE--Eccccc-ch----HHHHhheeEEecCCC-cC-cc
Confidence 5789999999999999999999999987410 12466776652 111000 00 011245899999742 33 48
Q ss_pred cHHHHHHHHHhhhh---HH----HHhcc---------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---EV----QMKNI---------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~----~~~~~---------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ .. ..... +....+..+.+||+|+ .+|+|||||||+. +|
T Consensus 98 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 177 (249)
T PRK14253 98 SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALD 177 (249)
T ss_pred cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCC
Confidence 99999987532211 00 00111 1123455667899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+..+.++|.++.+ +.+||++||.
T Consensus 178 ~~~~~~l~~~l~~~~~-~~tii~~sh~ 203 (249)
T PRK14253 178 PIATHKIEELMEELKK-NYTIVIVTHS 203 (249)
T ss_pred HHHHHHHHHHHHHHhc-CCeEEEEecC
Confidence 9999999999999865 4666666665
No 267
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=9.8e-16 Score=157.46 Aligned_cols=149 Identities=13% Similarity=0.163 Sum_probs=100.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++++|..++.. ...|.|++++. ++... . . .....+..+++++|+. .++. .
T Consensus 49 ~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~--~i~~~-~-~--~~~~~~~~i~~v~q~~-~l~~-~ 120 (272)
T PRK14236 49 PKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQ--NIYDK-K-V--DVAELRRRVGMVFQRP-NPFP-K 120 (272)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCE--ECccc-c-c--CHHHHhccEEEEecCC-ccCc-c
Confidence 5799999999999999999999999986310 13466777652 22110 0 0 0001134689999974 3333 5
Q ss_pred cHHHHHHHHHhhhh---H----HHHhccH---------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQ---E----VQMKNIL---------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~---~----~~~~~~L---------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+.....+ . ......+ ....++.+.+||+|+ .+|+||+||||+. +|
T Consensus 121 tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD 200 (272)
T PRK14236 121 SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALD 200 (272)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 99999987543211 0 0011111 123455667899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.+++.++.+ +.+||++||..
T Consensus 201 ~~~~~~l~~~L~~~~~-~~tiiivtH~~ 227 (272)
T PRK14236 201 PISTLKIEELITELKS-KYTIVIVTHNM 227 (272)
T ss_pred HHHHHHHHHHHHHHHh-CCeEEEEeCCH
Confidence 9999999999999976 56666666653
No 268
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.64 E-value=1.5e-15 Score=156.90 Aligned_cols=151 Identities=17% Similarity=0.165 Sum_probs=110.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC-Cc-ccceEEEEEehh-HHHHHH-HHHHHhhhhhhcccceeeeeccC-CCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE-GI-VKHRQRFHFHEA-MLKINE-HMHRLWKNQVAEKSLRSSISGWI-TNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~-~~-~~~k~rvhf~~f-m~~v~~-~l~~~~~~~~~~~~~ig~v~q~~-~~~~ 248 (587)
..|+.++|+|.+|||||||.++|.|+++ ++ ...++.|.|++- ...+.+ ++.++ +.+.++++||++ ..+.
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~i------RG~~I~mIfQ~p~~sLn 102 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKI------RGKEIAMIFQDPMTSLN 102 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhh------cCceEEEEEcCchhhcC
Confidence 5789999999999999999999999997 31 123468888873 111111 12222 246799999996 4567
Q ss_pred CCCcHHHHHHHHHhhhh----HH----HHhcc--------HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC
Q 007851 249 FDSKVMEWVAAEEKYKQ----EV----QMKNI--------LPAVADKFLVDQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~----~~----~~~~~--------L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
|-+|+.+-+......+. .. ..... -..+.+.++.+||||+ .+|+||+.||||+
T Consensus 103 Pv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTT 182 (316)
T COG0444 103 PVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTT 182 (316)
T ss_pred ChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcc
Confidence 77899888876655322 11 11111 1347889999999997 7999999999998
Q ss_pred -CCHHHHHHHHHHHHHHHh-CCcEEEEecCC
Q 007851 302 -VDVFAIVALSGIVSRLLS-TGTVLVATSNR 330 (587)
Q Consensus 302 -lD~~~a~~L~~Ll~~L~~-~G~vvV~TSn~ 330 (587)
||+..+..+.+||++|.+ .|.++|+.||.
T Consensus 183 ALDvt~QaqIl~Ll~~l~~e~~~aiilITHD 213 (316)
T COG0444 183 ALDVTVQAQILDLLKELQREKGTALILITHD 213 (316)
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 999999999999999987 58765544453
No 269
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=2.9e-16 Score=148.08 Aligned_cols=143 Identities=15% Similarity=0.178 Sum_probs=103.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
..+|+.+.|.||+|||||||+++++.+++|. .|.+.|.+- ++.. ....+ +..++|+.|. +-++..
T Consensus 26 v~~Ge~iaitGPSG~GKStllk~va~Lisp~---~G~l~f~Ge--~vs~~~pea~-------Rq~VsY~~Q~--paLfg~ 91 (223)
T COG4619 26 VRAGEFIAITGPSGCGKSTLLKIVASLISPT---SGTLLFEGE--DVSTLKPEAY-------RQQVSYCAQT--PALFGD 91 (223)
T ss_pred ecCCceEEEeCCCCccHHHHHHHHHhccCCC---CceEEEcCc--cccccChHHH-------HHHHHHHHcC--cccccc
Confidence 3579999999999999999999999999863 457777762 3221 01112 2346777764 567788
Q ss_pred cHHHHHHHHHhhhhHHH----HhccH------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 252 KVMEWVAAEEKYKQEVQ----MKNIL------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~----~~~~L------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
||++|+.|+...+.... ..+.+ ..+.++.+.+||||+ -.|+||+|||+|+ ||+..+..
T Consensus 92 tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ 171 (223)
T COG4619 92 TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRN 171 (223)
T ss_pred chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHH
Confidence 99999999877654211 11111 234556667999996 6899999999999 99999999
Q ss_pred HHHHHHHHHh-CCc-EEEEecC
Q 007851 310 LSGIVSRLLS-TGT-VLVATSN 329 (587)
Q Consensus 310 L~~Ll~~L~~-~G~-vvV~TSn 329 (587)
+-+++-.++. +.+ ++.+||+
T Consensus 172 ie~mi~~~v~~q~vAv~WiTHd 193 (223)
T COG4619 172 IEEMIHRYVREQNVAVLWITHD 193 (223)
T ss_pred HHHHHHHHhhhhceEEEEEecC
Confidence 9999999884 566 4555555
No 270
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.64 E-value=1e-15 Score=174.44 Aligned_cols=149 Identities=15% Similarity=0.190 Sum_probs=110.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|..++....+|.|.+++.... . ... ++.++|++|+ ...++.+||
T Consensus 49 ~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~--~--~~~-------~~~i~yv~Q~-~~~~~~lTV 116 (617)
T TIGR00955 49 KPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID--A--KEM-------RAISAYVQQD-DLFIPTLTV 116 (617)
T ss_pred eCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC--H--HHH-------hhhceeeccc-cccCccCcH
Confidence 578999999999999999999999987642123577888774211 1 111 2457999997 456778999
Q ss_pred HHHHHHHHhhhh-----HHH----Hhc-----cHHHHHhHhhh------hhcccC-----------CCccEEEEeCCCC-
Q 007851 254 MEWVAAEEKYKQ-----EVQ----MKN-----ILPAVADKFLV------DQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 254 ~eni~~~~~~~~-----~~~----~~~-----~L~~la~~l~~------~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+||+.+....+. ..+ .+. .+...++..++ .||||| .+|+|||+|||++
T Consensus 117 ~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsg 196 (617)
T TIGR00955 117 REHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSG 196 (617)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcc
Confidence 999998764321 011 111 12334455554 499998 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccc
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
+|...+..+.++++++.++|.++|+|+|.+..+
T Consensus 197 LD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~ 229 (617)
T TIGR00955 197 LDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSE 229 (617)
T ss_pred hhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHH
Confidence 999999999999999988889998998886443
No 271
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.63 E-value=9.4e-16 Score=177.28 Aligned_cols=143 Identities=16% Similarity=0.175 Sum_probs=99.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+|+||||||||+++++|..+| .+|.|.+++. ++.. + . ....++.+++|+|+ +.+++.|
T Consensus 502 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~--~i~~-~---~--~~~lr~~i~~v~Q~--~~lf~gT 568 (710)
T TIGR03796 502 LQPGQRVALVGGSGSGKSTIAKLVAGLYQP---WSGEILFDGI--PREE-I---P--REVLANSVAMVDQD--IFLFEGT 568 (710)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--eHHH-C---C--HHHHHhheeEEecC--Chhhhcc
Confidence 357999999999999999999999999986 2456766662 3321 1 0 01123578999997 5677899
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++|||.++.......+. ...+.+..+.+ ...||||| ++|+||+|||||+ +|.
T Consensus 569 i~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~ 648 (710)
T TIGR03796 569 VRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDP 648 (710)
T ss_pred HHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCH
Confidence 99999875321111110 01122222222 34799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+.. .+.|+|+.||+.
T Consensus 649 ~te~~i~~~l~~---~~~T~IiitHrl 672 (710)
T TIGR03796 649 ETEKIIDDNLRR---RGCTCIIVAHRL 672 (710)
T ss_pred HHHHHHHHHHHh---cCCEEEEEecCH
Confidence 999988888765 467776677763
No 272
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.63 E-value=1.2e-15 Score=171.96 Aligned_cols=144 Identities=18% Similarity=0.203 Sum_probs=100.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|.|+||||||||++++.|..+| .+|.|.+++- ++.. +.. ...++.++|++|+ +.+++.|
T Consensus 355 i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~---~~G~I~i~g~--~i~~-~~~-----~~~~~~i~~v~Q~--~~lf~~T 421 (571)
T TIGR02203 355 IEPGETVALVGRSGSGKSTLVNLIPRFYEP---DSGQILLDGH--DLAD-YTL-----ASLRRQVALVSQD--VVLFNDT 421 (571)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCeEEECCE--eHHh-cCH-----HHHHhhceEEccC--ccccccc
Confidence 357999999999999999999999999986 2456666652 2211 110 1123568999996 5788899
Q ss_pred HHHHHHHHHh-hhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 253 VMEWVAAEEK-YKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 253 V~eni~~~~~-~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
++|||.++.. .....+. ...+.+...++ ...||||| .+|+||+||||++ +|
T Consensus 422 i~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD 501 (571)
T TIGR02203 422 IANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501 (571)
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 9999987642 1111111 11233333333 23699997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
...+..+.+.|..+.+..++|++||+
T Consensus 502 ~~~~~~i~~~L~~~~~~~tiIiitH~ 527 (571)
T TIGR02203 502 NESERLVQAALERLMQGRTTLVIAHR 527 (571)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEehh
Confidence 99999999999988654345555555
No 273
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.63 E-value=1.4e-15 Score=153.98 Aligned_cols=147 Identities=10% Similarity=0.073 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc--CCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l--~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.. ++ .+|.|.+++. ++...-...+ ....+++++|+. ..++.+
T Consensus 31 ~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~G~i~~~g~--~~~~~~~~~~-----~~~~~~~~~q~~-~~~~~~ 99 (252)
T CHL00131 31 NKGEIHAIMGPNGSGKSTLSKVIAGHPAYKI---LEGDILFKGE--SILDLEPEER-----AHLGIFLAFQYP-IEIPGV 99 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCcCcC---CCceEEECCE--EcccCChhhh-----heeeEEEEeccc-cccccc
Confidence 578999999999999999999999973 43 2456666552 2211000000 012367788863 456667
Q ss_pred cHHHHHHHHHhhh---------hH----HHHhcc-----HH-HHHhHhhh-hhcccC-----------CCccEEEEeCCC
Q 007851 252 KVMEWVAAEEKYK---------QE----VQMKNI-----LP-AVADKFLV-DQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 252 tV~eni~~~~~~~---------~~----~~~~~~-----L~-~la~~l~~-~LSgGq-----------~~p~LL~LDEPt 300 (587)
++.+|+.+..... .. ...... +. ...++.+. .||||+ .+|+||+||||+
T Consensus 100 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 179 (252)
T CHL00131 100 SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETD 179 (252)
T ss_pred cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCc
Confidence 8999987543210 00 001111 11 23445555 599997 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+ +|+..+..+.++|.++.++|.+||++||..
T Consensus 180 ~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~ 211 (252)
T CHL00131 180 SGLDIDALKIIAEGINKLMTSENSIILITHYQ 211 (252)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 9 999999999999999987788777777753
No 274
>PRK13409 putative ATPase RIL; Provisional
Probab=99.63 E-value=1.8e-15 Score=171.27 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=101.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.++ + .++|++|+. ...+.+||
T Consensus 363 ~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p-~--~G~I~~~-----~----------------~i~y~~Q~~-~~~~~~tv 417 (590)
T PRK13409 363 YEGEVIGIVGPNGIGKTTFAKLLAGVLKP-D--EGEVDPE-----L----------------KISYKPQYI-KPDYDGTV 417 (590)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--ceEEEEe-----e----------------eEEEecccc-cCCCCCcH
Confidence 57899999999999999999999999986 2 3455543 0 268899874 35678999
Q ss_pred HHHHHHHHhhhhHH-HH-----hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEV-QM-----KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVS 315 (587)
Q Consensus 254 ~eni~~~~~~~~~~-~~-----~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~ 315 (587)
.+|+.+........ .. ...+...+++.+.+||||| .+|+||+||||++ +|+..+..+.++|+
T Consensus 418 ~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~ 497 (590)
T PRK13409 418 EDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIR 497 (590)
T ss_pred HHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 99998753211110 11 1123456788889999997 7999999999999 99999999999999
Q ss_pred HHHhC-CcEEEEecCC
Q 007851 316 RLLST-GTVLVATSNR 330 (587)
Q Consensus 316 ~L~~~-G~vvV~TSn~ 330 (587)
++.++ |.+||++||.
T Consensus 498 ~l~~~~g~tviivsHD 513 (590)
T PRK13409 498 RIAEEREATALVVDHD 513 (590)
T ss_pred HHHHhCCCEEEEEeCC
Confidence 99774 7766666665
No 275
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=2.5e-15 Score=154.95 Aligned_cols=148 Identities=14% Similarity=0.114 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+||||||||+++|+|.+++.. ...++|.+++. .+.. .... ......++|++|++. ++ ..
T Consensus 45 ~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~--~i~~-~~~~----~~~~~~i~~v~q~~~-l~-~~ 115 (276)
T PRK14271 45 PARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR--SIFN-YRDV----LEFRRRVGMLFQRPN-PF-PM 115 (276)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCE--Eccc-cchh----HHHhhheEEeccCCc-cC-Cc
Confidence 4789999999999999999999999987410 12467777652 1111 0000 011246899999743 33 48
Q ss_pred cHHHHHHHHHhhh---hHHH----Hhcc-----HH----HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYK---QEVQ----MKNI-----LP----AVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~---~~~~----~~~~-----L~----~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+.+|+.+..... .... .... +. ...++.+.+||+|| .+|+||+||||+. +|
T Consensus 116 tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD 195 (276)
T PRK14271 116 SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALD 195 (276)
T ss_pred cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 9999998753211 1100 0111 11 12345567899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+..+.++|.++.+. .+||++||..
T Consensus 196 ~~~~~~l~~~L~~~~~~-~tiiivsH~~ 222 (276)
T PRK14271 196 PTTTEKIEEFIRSLADR-LTVIIVTHNL 222 (276)
T ss_pred HHHHHHHHHHHHHHhcC-CEEEEEeCCH
Confidence 99999999999998764 6666666653
No 276
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.63 E-value=1.6e-15 Score=152.61 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=103.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++++|+||+||||+++++.|.+.| ..|+.+|....-... +.+.-+.+++|+.+...+.+++.
T Consensus 47 IP~G~ivgflGaNGAGKSTtLKmLTGll~p-~~G~v~V~G~~Pf~~-----------~~~~~~~~~~v~gqk~ql~Wdlp 114 (325)
T COG4586 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLP-TSGKVRVNGKDPFRR-----------REEYLRSIGLVMGQKLQLWWDLP 114 (325)
T ss_pred cCCCcEEEEEcCCCCcchhhHHHHhCcccc-CCCeEEecCcCcchh-----------HHHHHHHHHHHhhhhheeeeech
Confidence 468999999999999999999999999986 467777743321111 01112345666666566667766
Q ss_pred HHHHHHHHHhhhhH-----HH----Hhc--cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQE-----VQ----MKN--ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~~-----~~----~~~--~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+.+......+.. .+ ... .+....+..++.||-|| ++|+||+|||||+ ||+..+..
T Consensus 115 ~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ 194 (325)
T COG4586 115 ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQAN 194 (325)
T ss_pred hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHH
Confidence 66665443322210 00 011 12344666678899997 8999999999999 99999999
Q ss_pred HHHHHHHHHhC-CcEEEEecCCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+++.+++..++ +.||+.|||..
T Consensus 195 ir~Flke~n~~~~aTVllTTH~~ 217 (325)
T COG4586 195 IREFLKEYNEERQATVLLTTHIF 217 (325)
T ss_pred HHHHHHHHHHhhCceEEEEecch
Confidence 99999999875 78999999974
No 277
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.63 E-value=1.8e-15 Score=169.87 Aligned_cols=145 Identities=17% Similarity=0.147 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++++|..+| . +|.|.+++. ++.. +.. ...++.+++++|+ +.+++.|+
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~--~G~i~~~g~--~i~~-~~~-----~~~~~~i~~v~q~--~~lf~~ti 408 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWPP-T--SGSVRLDGA--DLKQ-WDR-----ETFGKHIGYLPQD--VELFPGTV 408 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEECCE--ehhh-CCH-----HHHhhheEEecCC--cccccccH
Confidence 57899999999999999999999999986 2 456666652 2221 000 0123568999997 45566799
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHHh-----------HhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVAD-----------KFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la~-----------~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+||+.+........+. ...+.++.+ +...+||||| .+|++|+||||++ +|..
T Consensus 409 ~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~ 488 (544)
T TIGR01842 409 AENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488 (544)
T ss_pred HHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHH
Confidence 9999854321111110 011222222 2245799997 7999999999998 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.+.+..+..+|.++|++||+.
T Consensus 489 ~~~~i~~~l~~~~~~~~tvi~ith~~ 514 (544)
T TIGR01842 489 GEQALANAIKALKARGITVVVITHRP 514 (544)
T ss_pred HHHHHHHHHHHHhhCCCEEEEEeCCH
Confidence 99999999998876677777777763
No 278
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.62 E-value=1.3e-15 Score=175.83 Aligned_cols=142 Identities=17% Similarity=0.222 Sum_probs=100.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+|+||||||||+++++|..+| .+|.|.+++. ++.+ .... .++.+++|+|+ +.+++.|
T Consensus 489 ~~G~~iaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~--~l~~~~~~~-------lr~~i~~v~Q~--~~lf~~T 554 (694)
T TIGR03375 489 RPGEKVAIIGRIGSGKSTLLKLLLGLYQP---TEGSVLLDGV--DIRQIDPAD-------LRRNIGYVPQD--PRLFYGT 554 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCE--EhhhCCHHH-------HHhccEEECCC--hhhhhhh
Confidence 57999999999999999999999999986 2456666652 2221 0111 23578999996 4677889
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++||+.++.......+. ...+.+..+.+ ...||||| .+|+||+|||||+ +|+
T Consensus 555 I~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~ 634 (694)
T TIGR03375 555 LRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDN 634 (694)
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 99999876432111111 11122222222 24799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.....+.+.+.++.+ +.|+|+.||+
T Consensus 635 ~te~~i~~~l~~~~~-~~T~iiItHr 659 (694)
T TIGR03375 635 RSEERFKDRLKRWLA-GKTLVLVTHR 659 (694)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 999999999998875 4555555555
No 279
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2e-15 Score=157.89 Aligned_cols=148 Identities=14% Similarity=0.212 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+|+|||||||||++|+|.+++. ....+.|.+++. ++... .. .....++.++|++|+.. ++..
T Consensus 69 ~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~--~i~~~--~~--~~~~~~~~i~~v~q~~~--l~~~ 140 (305)
T PRK14264 69 PEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ--DIYQD--GV--NLVELRKRVGMVFQSPN--PFPK 140 (305)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE--Ecccc--cc--cHHHHhhceEEEccCCc--cccc
Confidence 579999999999999999999999998521 013466777652 22110 00 00011246899999743 3346
Q ss_pred cHHHHHHHHHhhh----------------hH---HHHhcc---------HHHHHhHhhhhhcccC-----------CCcc
Q 007851 252 KVMEWVAAEEKYK----------------QE---VQMKNI---------LPAVADKFLVDQHADQ-----------RGAS 292 (587)
Q Consensus 252 tV~eni~~~~~~~----------------~~---~~~~~~---------L~~la~~l~~~LSgGq-----------~~p~ 292 (587)
||.+|+.++.... .. ...... +....+..+.+||+|+ .+|+
T Consensus 141 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~ 220 (305)
T PRK14264 141 SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPE 220 (305)
T ss_pred cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998753211 00 001111 1223455567899997 7999
Q ss_pred EEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 293 ILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 293 LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
||+||||+. +|+.....+.++|..+.+. .+||++||.
T Consensus 221 lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~ 258 (305)
T PRK14264 221 VILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHN 258 (305)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcC
Confidence 999999999 9999999999999999765 666666665
No 280
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.62 E-value=2.7e-15 Score=170.40 Aligned_cols=152 Identities=19% Similarity=0.234 Sum_probs=117.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.||+||||||||++++|-.++...-+|.|.+++...+. +. .++..|||.|+ ..+++.+||
T Consensus 54 ~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~----~~-------~~~~s~yV~Qd-D~l~~~LTV 121 (613)
T KOG0061|consen 54 KPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS----RS-------FRKISGYVQQD-DVLLPTLTV 121 (613)
T ss_pred ecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch----hh-------hhheeEEEccc-ccccccccH
Confidence 5799999999999999999999999887422345788888732221 11 12457999997 567888999
Q ss_pred HHHHHHHHhhhh-----HHH----Hhc-----cHHHHHhHhhh-----hhcccC-----------CCccEEEEeCCCC-C
Q 007851 254 MEWVAAEEKYKQ-----EVQ----MKN-----ILPAVADKFLV-----DQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~~~-----~~~----~~~-----~L~~la~~l~~-----~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
+|++.+....+- ..+ +++ .+..+++.+++ .+|||| .+|.||++||||+ |
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 999998765431 111 111 23456677665 499997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCCcccccc
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQ 337 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~ 337 (587)
|...|..+.++++++.+.|.+||+|=|.|..+++.
T Consensus 202 DS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~ 236 (613)
T KOG0061|consen 202 DSFSALQVVQLLKRLARSGRTVICTIHQPSSELFE 236 (613)
T ss_pred chhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHH
Confidence 99999999999999999999999999998777663
No 281
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.62 E-value=1.2e-15 Score=175.73 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=99.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+|+||||||||+++++|..+| .+|.|.+++. ++.. +. ....++.+++|+|+ +.+++.|
T Consensus 476 i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p---~~G~I~idg~--~i~~-~~-----~~~lr~~i~~v~Q~--~~lf~gT 542 (686)
T TIGR03797 476 IEPGEFVAIVGPSGSGKSTLLRLLLGFETP---ESGSVFYDGQ--DLAG-LD-----VQAVRRQLGVVLQN--GRLMSGS 542 (686)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCCEEEECCE--EcCc-CC-----HHHHHhccEEEccC--CccCccc
Confidence 357999999999999999999999999986 2456666652 2211 00 01123578999997 4667889
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++||+.++.. ....+. ...+.+..+.+ ...||||| ++|+||+|||||+ +|.
T Consensus 543 I~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~ 621 (686)
T TIGR03797 543 IFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDN 621 (686)
T ss_pred HHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 9999988643 211111 11122222222 24799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+..+ +.|+|+.+|+.
T Consensus 622 ~te~~i~~~L~~~---~~T~IiItHr~ 645 (686)
T TIGR03797 622 RTQAIVSESLERL---KVTRIVIAHRL 645 (686)
T ss_pred HHHHHHHHHHHHh---CCeEEEEecCh
Confidence 9999988888776 45666666663
No 282
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.62 E-value=4.9e-15 Score=162.95 Aligned_cols=154 Identities=14% Similarity=0.097 Sum_probs=110.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc-ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~-~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~~~ 251 (587)
.+|+.++|+|.+||||||+..++.|+++.. ....|+|.|++- ++.....+.. ..-..+.++++||++.. +.|-+
T Consensus 33 ~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~--dl~~l~~~~~--r~~rg~~Ia~i~Q~p~~slnP~~ 108 (539)
T COG1123 33 EPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR--DLLGLSEREM--RKLRGKRIAMIFQDPMTSLNPVM 108 (539)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc--chhcCCHHHH--HHhccccEEEEecCchhhcCchh
Confidence 579999999999999999999999999853 112588988873 3322111111 11234679999999754 44558
Q ss_pred cHHHHHHHHHhhhh---HHH----Hhcc-----HHHHH--hHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 252 KVMEWVAAEEKYKQ---EVQ----MKNI-----LPAVA--DKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 252 tV~eni~~~~~~~~---~~~----~~~~-----L~~la--~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+.+-|......+. ..+ ..+. +++-. ++++++||||| .+|+||++||||+ ||+.
T Consensus 109 tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt 188 (539)
T COG1123 109 TIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVT 188 (539)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHH
Confidence 88888876544332 111 1111 11112 56999999997 7999999999998 9999
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.+..+.++|+.+.+ .|+.+|++||.+
T Consensus 189 ~q~qIL~llk~l~~e~g~a~l~ITHDl 215 (539)
T COG1123 189 TQAQILDLLKDLQRELGMAVLFITHDL 215 (539)
T ss_pred HHHHHHHHHHHHHHHcCcEEEEEcCCH
Confidence 99999999999986 488777777764
No 283
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.62 E-value=1.5e-15 Score=171.22 Aligned_cols=145 Identities=15% Similarity=0.186 Sum_probs=100.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+|+||||||||+++++|..+| .+|.|.+++. +++..-. ...++.+++++|+ +.+++.|
T Consensus 363 i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p---~~G~I~i~g~--~i~~~~~------~~~~~~i~~~~Q~--~~lf~~T 429 (576)
T TIGR02204 363 VRPGETVALVGPSGAGKSTLFQLLLRFYDP---QSGRILLDGV--DLRQLDP------AELRARMALVPQD--PVLFAAS 429 (576)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhccCC---CCCEEEECCE--EHHhcCH------HHHHHhceEEccC--Ccccccc
Confidence 357999999999999999999999999986 2456666652 3321100 0112468999996 5688999
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++||+.++.......+. ...+.+..+++ ...||||| ++|++|+||||++ +|+
T Consensus 430 i~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~ 509 (576)
T TIGR02204 430 VMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDA 509 (576)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCH
Confidence 99999875322111111 11122222222 23699997 6999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+..+.+.+..+.+ +.++|++||+.
T Consensus 510 ~~~~~i~~~l~~~~~-~~t~IiitH~~ 535 (576)
T TIGR02204 510 ESEQLVQQALETLMK-GRTTLIIAHRL 535 (576)
T ss_pred HHHHHHHHHHHHHhC-CCEEEEEecch
Confidence 999999999998854 56666666654
No 284
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.62 E-value=8.8e-16 Score=171.21 Aligned_cols=147 Identities=19% Similarity=0.174 Sum_probs=103.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccC--CCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWI--TNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~--~~~~~~ 250 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.+++. ++.. ..... .+..++|++|+. ..+++.
T Consensus 287 ~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p-~--~G~i~~~g~--~i~~~~~~~~------~~~~i~~v~q~~~~~~l~~~ 355 (510)
T PRK15439 287 RAGEILGLAGVVGAGRTELAETLYGLRPA-R--GGRIMLNGK--EINALSTAQR------LARGLVYLPEDRQSSGLYLD 355 (510)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHcCCCCC-C--CcEEEECCE--ECCCCCHHHH------HhCCcEECCCChhhCCccCC
Confidence 57899999999999999999999999875 2 356666542 1110 00000 123589999874 246677
Q ss_pred CcHHHHHHHHH----hh--hhH-H--HHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 251 SKVMEWVAAEE----KY--KQE-V--QMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 251 ~tV~eni~~~~----~~--~~~-~--~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
+|+.+|+.... .. ... . .... .+. ..+++.+.+||||| .+|+||+||||+. +|
T Consensus 356 ~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD 435 (510)
T PRK15439 356 APLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435 (510)
T ss_pred CcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcC
Confidence 89999985321 11 001 0 1111 122 23566678999997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.++|..+.++|.+||++||..
T Consensus 436 ~~~~~~l~~~l~~l~~~g~tiIivsHd~ 463 (510)
T PRK15439 436 VSARNDIYQLIRSIAAQNVAVLFISSDL 463 (510)
T ss_pred hhHHHHHHHHHHHHHhCCCEEEEECCCH
Confidence 9999999999999988888777777763
No 285
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.62 E-value=1.4e-15 Score=173.72 Aligned_cols=133 Identities=20% Similarity=0.278 Sum_probs=97.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.++|+||||||||||+++|+|.++| . .|.|.+.. . -.+||++|+...+++.+|
T Consensus 342 i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~--~G~i~~~~---~----------------~~i~y~~q~~~~l~~~~t 399 (635)
T PRK11147 342 VQRGDKIALIGPNGCGKTTLLKLMLGQLQA-D--SGRIHCGT---K----------------LEVAYFDQHRAELDPEKT 399 (635)
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCC-C--CcEEEECC---C----------------cEEEEEeCcccccCCCCC
Confidence 357899999999999999999999999875 2 34565522 0 137899987555777899
Q ss_pred HHHHHHHHHhh---hh-HHHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 253 VMEWVAAEEKY---KQ-EVQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 253 V~eni~~~~~~---~~-~~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
|.+|+.+.... .. ...... .+ ....++.+.+||||+ .+|+||+||||+. +|+.....|
T Consensus 400 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l 479 (635)
T PRK11147 400 VMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELL 479 (635)
T ss_pred HHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 99999864321 11 111111 12 234567788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecC
Q 007851 311 SGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn 329 (587)
.+++..+ .|++|++||+
T Consensus 480 ~~~l~~~--~~tvi~vSHd 496 (635)
T PRK11147 480 EELLDSY--QGTVLLVSHD 496 (635)
T ss_pred HHHHHhC--CCeEEEEECC
Confidence 8888876 4545555555
No 286
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.62 E-value=5.9e-16 Score=143.56 Aligned_cols=146 Identities=17% Similarity=0.112 Sum_probs=107.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.|-|+||+|||||||+.-+.|.+.+...-.+++..++- + +..+ ...++.+|++||+ .-+++.++|
T Consensus 26 a~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~--~----l~~l----Pa~qRq~GiLFQD-~lLFphlsV 94 (213)
T COG4136 26 AKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQ--R----LDML----PAAQRQIGILFQD-ALLFPHLSV 94 (213)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCe--e----cccc----chhhhheeeeecc-ccccccccc
Confidence 578999999999999999999999988764444566666552 1 1111 2234678999998 567888999
Q ss_pred HHHHHHHHh--hhhHH---H-----HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 254 MEWVAAEEK--YKQEV---Q-----MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 254 ~eni~~~~~--~~~~~---~-----~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
.+|+.|... .++.. . .+..+....++.+.+||||| .+|+.|+||||++ +|.+-+...+
T Consensus 95 g~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR 174 (213)
T COG4136 95 GQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFR 174 (213)
T ss_pred ccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHH
Confidence 999987543 22211 1 12235566788889999998 6999999999999 9999888777
Q ss_pred HH-HHHHHhCCc-EEEEecCC
Q 007851 312 GI-VSRLLSTGT-VLVATSNR 330 (587)
Q Consensus 312 ~L-l~~L~~~G~-vvV~TSn~ 330 (587)
++ |.++.+.|+ +|.+||+.
T Consensus 175 ~wVFs~~r~agiPtv~VTHD~ 195 (213)
T COG4136 175 QWVFSEVRAAGIPTVQVTHDL 195 (213)
T ss_pred HHHHHHHHhcCCCeEEEeccc
Confidence 65 455566788 66677664
No 287
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.4e-15 Score=152.33 Aligned_cols=147 Identities=15% Similarity=0.142 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccce----EEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR----QRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k----~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
.+|+.++|+|+||||||||+++|+|..++. .|. +.+.|.+ .++.. .. ....+..+++++|++ .+++
T Consensus 34 ~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~-~G~v~~~G~~~~~g--~~~~~----~~--~~~~~~~i~~~~q~~-~~~~ 103 (257)
T PRK14246 34 PNNSIFGIMGPSGSGKSTLLKVLNRLIEIY-DSKIKVDGKVLYFG--KDIFQ----ID--AIKLRKEVGMVFQQP-NPFP 103 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCC-cCceeEcCEEEECC--ccccc----CC--HHHHhcceEEEccCC-ccCC
Confidence 478999999999999999999999998752 332 2333322 11110 00 001134689999873 4566
Q ss_pred CCcHHHHHHHHHhhhh---HHH----Hhc-----cH----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 250 DSKVMEWVAAEEKYKQ---EVQ----MKN-----IL----PAVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~---~~~----~~~-----~L----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
.+|+.+|+.++....+ ... ... .+ ....+..+..||+|+ .+|++||||||+.
T Consensus 104 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~ 183 (257)
T PRK14246 104 HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSM 183 (257)
T ss_pred CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCcc
Confidence 7899999987643211 111 111 11 123455667899996 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.....+.++|.++.+ +.+||++||..
T Consensus 184 LD~~~~~~l~~~l~~~~~-~~tiilvsh~~ 212 (257)
T PRK14246 184 IDIVNSQAIEKLITELKN-EIAIVIVSHNP 212 (257)
T ss_pred CCHHHHHHHHHHHHHHhc-CcEEEEEECCH
Confidence 999999999999999865 56677777753
No 288
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.62 E-value=1.9e-15 Score=171.23 Aligned_cols=144 Identities=13% Similarity=0.173 Sum_probs=98.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+|+||||||||++++.|..+| . +|.|.+++. ++.. +. ....++.++|++|+ +.+++.|+
T Consensus 359 ~~G~~v~IvG~sGsGKSTLl~lL~gl~~p-~--~G~I~i~g~--~i~~----~~--~~~~r~~i~~v~Q~--~~lf~~Ti 425 (588)
T PRK13657 359 KPGQTVAIVGPTGAGKSTLINLLQRVFDP-Q--SGRILIDGT--DIRT----VT--RASLRRNIAVVFQD--AGLFNRSI 425 (588)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCcCC-C--CCEEEECCE--Ehhh----CC--HHHHHhheEEEecC--cccccccH
Confidence 57899999999999999999999999986 2 345666652 2221 10 01123568999997 46778899
Q ss_pred HHHHHHHHhhhhHHHHh-----ccHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQMK-----NILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~-----~~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+||+.++.......+.. ..+.+.. .+-...||||| ++|+||+||||++ +|+.
T Consensus 426 ~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 426 EDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 99999863211111100 1111211 22223699997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.+.+..+.. +.++|++||+.
T Consensus 506 t~~~i~~~l~~~~~-~~tvIiitHr~ 530 (588)
T PRK13657 506 TEAKVKAALDELMK-GRTTFIIAHRL 530 (588)
T ss_pred HHHHHHHHHHHHhc-CCEEEEEEecH
Confidence 99999999988754 55555555553
No 289
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=3.4e-15 Score=157.78 Aligned_cols=150 Identities=14% Similarity=0.166 Sum_probs=102.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
..+|+.++|+|+||||||||+++|+|..++. ....|.|.+++. ++... .. .....++.+++++|++ .++.
T Consensus 105 I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~--~i~~~--~~--~~~~lr~~i~~v~q~~--~~~~ 176 (329)
T PRK14257 105 IKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGT--NTRSK--KI--SSLELRTRIGMVFQKP--TPFE 176 (329)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCE--Ecccc--cc--chHhhhccEEEEecCC--ccCC
Confidence 3578999999999999999999999988521 012467777652 32110 00 0001134689999974 3457
Q ss_pred CcHHHHHHHHHhhhh---HHH----Hhc---------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 251 SKVMEWVAAEEKYKQ---EVQ----MKN---------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 251 ~tV~eni~~~~~~~~---~~~----~~~---------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.|+++|+.++....+ ... ... .+....++.+.+||||| .+|+|||||||++ +
T Consensus 177 ~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~L 256 (329)
T PRK14257 177 MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSAL 256 (329)
T ss_pred CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccC
Confidence 899999997643211 000 011 12233456667899997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+.....+.++|..+.+ +.+||++||+.
T Consensus 257 D~~~~~~i~~~i~~l~~-~~Tii~iTH~l 284 (329)
T PRK14257 257 DPIATAKIEELILELKK-KYSIIIVTHSM 284 (329)
T ss_pred CHHHHHHHHHHHHHHhc-CCEEEEEeCCH
Confidence 99999999999999876 46666666653
No 290
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.61 E-value=4e-16 Score=150.60 Aligned_cols=122 Identities=17% Similarity=0.217 Sum_probs=85.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|.||||||||||+++++|.+++ . .+.|.+++. ++.. ..... ...+++++|-
T Consensus 23 ~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~--~G~v~~~g~--~~~~~~~~~~-------~~~i~~~~q~--------- 81 (180)
T cd03214 23 EAGEIVGILGPNGAGKSTLLKTLAGLLKP-S--SGEILLDGK--DLASLSPKEL-------ARKIAYVPQA--------- 81 (180)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ECCcCCHHHH-------HHHHhHHHHH---------
Confidence 47899999999999999999999999875 3 355666542 1110 00011 1234555540
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhC
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLST 320 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~ 320 (587)
. ....+....++.+.+||+|+ .+|++|+||||+. +|+..+..+.++|..+.++
T Consensus 82 -l--------------~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~ 146 (180)
T cd03214 82 -L--------------ELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARE 146 (180)
T ss_pred -H--------------HHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh
Confidence 0 01122334455567788885 7999999999998 9999999999999999776
Q ss_pred -CcEEEEecCCC
Q 007851 321 -GTVLVATSNRA 331 (587)
Q Consensus 321 -G~vvV~TSn~~ 331 (587)
|.++|++||..
T Consensus 147 ~~~tiii~sh~~ 158 (180)
T cd03214 147 RGKTVVMVLHDL 158 (180)
T ss_pred cCCEEEEEeCCH
Confidence 77777777764
No 291
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.61 E-value=3.7e-15 Score=154.28 Aligned_cols=131 Identities=18% Similarity=0.173 Sum_probs=90.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ . .|.|.+++ .++|++|+. .++..||
T Consensus 61 ~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p-~--~G~I~i~g---------------------~i~yv~q~~--~l~~~tv 114 (282)
T cd03291 61 EKGEMLAITGSTGSGKTSLLMLILGELEP-S--EGKIKHSG---------------------RISFSSQFS--WIMPGTI 114 (282)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECC---------------------EEEEEeCcc--cccccCH
Confidence 57899999999999999999999999985 2 34565433 268888863 3344699
Q ss_pred HHHHHHHHhhhh--HHH--HhccHHHHHh-----------HhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQ--EVQ--MKNILPAVAD-----------KFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~--~~~~L~~la~-----------~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+.+...... ... ....+....+ ..+.+||+|+ .+|++||||||+. +|+..
T Consensus 115 ~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~ 194 (282)
T cd03291 115 KENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194 (282)
T ss_pred HHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 999986432111 000 0011122222 1235899996 7999999999998 99999
Q ss_pred HHHHHHH-HHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGI-VSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~L-l~~L~~~G~vvV~TSn~~ 331 (587)
...+.++ +..+. +|.+||++||..
T Consensus 195 ~~~l~~~ll~~~~-~~~tIiiisH~~ 219 (282)
T cd03291 195 EKEIFESCVCKLM-ANKTRILVTSKM 219 (282)
T ss_pred HHHHHHHHHHHhh-CCCEEEEEeCCh
Confidence 9888875 45554 466666666654
No 292
>PRK13409 putative ATPase RIL; Provisional
Probab=99.61 E-value=2.4e-15 Score=170.30 Aligned_cols=150 Identities=16% Similarity=0.239 Sum_probs=99.1
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEE-----------EehhHHHHHHHHHHHhhhhhhcccceeee
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFH-----------FHEAMLKINEHMHRLWKNQVAEKSLRSSI 240 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvh-----------f~~fm~~v~~~l~~~~~~~~~~~~~ig~v 240 (587)
.+.+|+.++|+||||+|||||+++|+|.++|. .|+|. |.+ .++......+. .....+++.
T Consensus 95 ~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~---~G~i~~~~~~~~~~~~~~G--~~l~~~~~~~~----~~~~~~~~~ 165 (590)
T PRK13409 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPN---LGDYEEEPSWDEVLKRFRG--TELQNYFKKLY----NGEIKVVHK 165 (590)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHhCCccCC---CccccCCCcHHHHHHHhCC--hHHHHHHHHHh----ccCcceeec
Confidence 35689999999999999999999999999862 34554 333 12221111110 011223444
Q ss_pred eccC--CCCCCCCcHHHHHHHHHhhhhHHH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 241 SGWI--TNLPFDSKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 241 ~q~~--~~~~~~~tV~eni~~~~~~~~~~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+|.. .+.++..||.+++..........+ ....+....++.+.+||||+ .+|+||+||||++ ||+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~ 245 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDI 245 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 4432 112234599999864321110000 11123455778888999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+..+.+++..+.+ |.+||++||+.
T Consensus 246 ~~~~~l~~~i~~l~~-g~tvIivsHd~ 271 (590)
T PRK13409 246 RQRLNVARLIRELAE-GKYVLVVEHDL 271 (590)
T ss_pred HHHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 999999999999988 88777777754
No 293
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.61 E-value=1.6e-15 Score=146.21 Aligned_cols=163 Identities=17% Similarity=0.190 Sum_probs=116.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+--+|+||||+||||+||+|.|..+| ..+++.|++- .++.. .-+++ .+..||--||- +..+..+|
T Consensus 29 ~~Gelr~lIGpNGAGKTT~mD~ItGKtrp---~~G~v~f~g~-~dl~~~~e~~I------Ar~GIGRKFQ~-PtVfe~lt 97 (249)
T COG4674 29 DPGELRVLIGPNGAGKTTLMDVITGKTRP---QEGEVLFDGD-TDLTKLPEHRI------ARAGIGRKFQK-PTVFENLT 97 (249)
T ss_pred cCCeEEEEECCCCCCceeeeeeecccCCC---CcceEEEcCc-hhhccCCHHHH------HHhccCccccC-Ceehhhcc
Confidence 57899999999999999999999999986 3578888762 12211 01122 12456777886 46778899
Q ss_pred HHHHHHHHHhhhh----------HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 253 VMEWVAAEEKYKQ----------EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 253 V~eni~~~~~~~~----------~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
|+||+........ .. ..+. .|.+.++..+..||.|| ++|++|++|||.+
T Consensus 98 V~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAG 177 (249)
T COG4674 98 VRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAG 177 (249)
T ss_pred HHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCC
Confidence 9999987653211 00 1111 23456778888999997 7999999999998
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
+.-+..+...+||+.|.....++|+-|+. .|+..|..+..|++-++
T Consensus 178 MTd~Et~~taeLl~~la~~hsilVVEHDM----------------~Fvr~~A~~VTVlh~G~ 223 (249)
T COG4674 178 MTDAETEKTAELLKSLAGKHSILVVEHDM----------------GFVREIADKVTVLHEGS 223 (249)
T ss_pred CcHHHHHHHHHHHHHHhcCceEEEEeccH----------------HHHHHhhheeEEEeccc
Confidence 55566778899999997765566665553 36777778888887543
No 294
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.61 E-value=1.7e-15 Score=171.25 Aligned_cols=145 Identities=14% Similarity=0.146 Sum_probs=101.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+||||||||||+++++|..+| .+|.|.+++. ++.. .. ....++.+++++|+ +.+++.|
T Consensus 363 i~~G~~~aivG~sGsGKSTL~~ll~g~~~p---~~G~I~i~g~--~i~~----~~--~~~~r~~i~~v~Q~--~~lf~~t 429 (574)
T PRK11160 363 IKAGEKVALLGRTGCGKSTLLQLLTRAWDP---QQGEILLNGQ--PIAD----YS--EAALRQAISVVSQR--VHLFSAT 429 (574)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCE--Ehhh----CC--HHHHHhheeEEccc--chhhccc
Confidence 357999999999999999999999999986 2456766652 2221 10 01123568999997 4667889
Q ss_pred HHHHHHHHHhhhhHHHHh-----ccHHHHHhH----------hhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQEVQMK-----NILPAVADK----------FLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~-----~~L~~la~~----------l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
++||+.++.......+.. ..+.+..+. ....||||| ++|++|+||||++ +|..
T Consensus 430 i~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 430 LRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred HHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 999998764321111111 112222222 234699997 8999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.+.+..+.+ |.++|+++|+.
T Consensus 510 t~~~i~~~l~~~~~-~~tviiitHr~ 534 (574)
T PRK11160 510 TERQILELLAEHAQ-NKTVLMITHRL 534 (574)
T ss_pred HHHHHHHHHHHHcC-CCEEEEEecCh
Confidence 99999999998864 56666666654
No 295
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.61 E-value=4.2e-15 Score=143.78 Aligned_cols=108 Identities=19% Similarity=0.200 Sum_probs=78.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.+++ . .+.|.+++. .+++++|... ++.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--------------------~i~~~~q~~~-----LSg 74 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIP-N--GDNDEWDGI--------------------TPVYKPQYID-----LSG 74 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC-C--CcEEEECCE--------------------EEEEEcccCC-----CCH
Confidence 47899999999999999999999999986 2 356655541 2566766421 111
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCC-cEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTG-TVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G-~vvV~TSn~~ 331 (587)
.+ .. .-.+|..++ .+|++|+||||++ +|+..+..+.+++.++.+++ .++|++||..
T Consensus 75 Gq--------------~q-rv~laral~-------~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~ 132 (177)
T cd03222 75 GE--------------LQ-RVAIAAALL-------RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL 132 (177)
T ss_pred HH--------------HH-HHHHHHHHh-------cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 00 00 123455554 6899999999998 99999999999999997765 7777777753
No 296
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.61 E-value=2.1e-15 Score=174.44 Aligned_cols=144 Identities=12% Similarity=0.173 Sum_probs=99.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+|+||||||||++++.|..+| .+|.|.+++. ++.. +.. ...++.+++|+|+ +.+++.|
T Consensus 497 i~~G~~vaIvG~SGsGKSTLlklL~gl~~p---~~G~I~idg~--~i~~-~~~-----~~lr~~i~~v~Q~--~~lf~gT 563 (708)
T TIGR01193 497 IKMNSKTTIVGMSGSGKSTLAKLLVGFFQA---RSGEILLNGF--SLKD-IDR-----HTLRQFINYLPQE--PYIFSGS 563 (708)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccCCC---CCcEEEECCE--EHHH-cCH-----HHHHHheEEEecC--ceehhHH
Confidence 357999999999999999999999999986 2456766663 3321 100 1123578999997 5677889
Q ss_pred HHHHHHHHH-hhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 253 VMEWVAAEE-KYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 253 V~eni~~~~-~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
++||+.++. ......+. ...+.+....+ ..+||||| ++|+||+|||||+ +|
T Consensus 564 I~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD 643 (708)
T TIGR01193 564 ILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLD 643 (708)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCC
Confidence 999999862 21111110 01122222222 24699997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
......+.+.+..+ +|.|+|+.+|+.
T Consensus 644 ~~te~~i~~~L~~~--~~~T~IiitHr~ 669 (708)
T TIGR01193 644 TITEKKIVNNLLNL--QDKTIIFVAHRL 669 (708)
T ss_pred HHHHHHHHHHHHHh--cCCEEEEEecch
Confidence 99999998888875 466666666663
No 297
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.61 E-value=4.6e-15 Score=149.76 Aligned_cols=148 Identities=10% Similarity=0.071 Sum_probs=94.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC-CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE-GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~-~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|..+ ++ .+|.|.+++. ++.. ... . ...+..+++++|+. ..++.++
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~--~~G~i~~~g~--~~~~-~~~-~---~~~~~~i~~~~q~~-~~~~~~~ 94 (248)
T PRK09580 25 RPGEVHAIMGPNGSGKSTLSATLAGREDYEV--TGGTVEFKGK--DLLE-LSP-E---DRAGEGIFMAFQYP-VEIPGVS 94 (248)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCccCCC--CceEEEECCC--cccc-CCH-H---HHhhcceEEEecCc-hhccchh
Confidence 4789999999999999999999999953 22 3467777662 2211 000 0 00124578898874 3344455
Q ss_pred HHHHHHHHHh---hh-h-----HHHHhccHH----------HHHhHhhh-hhcccC-----------CCccEEEEeCCCC
Q 007851 253 VMEWVAAEEK---YK-Q-----EVQMKNILP----------AVADKFLV-DQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 253 V~eni~~~~~---~~-~-----~~~~~~~L~----------~la~~l~~-~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
+.+++..... .. . .......+. ...++.+. +||+|+ .+|+||+||||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~ 174 (248)
T PRK09580 95 NQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDS 174 (248)
T ss_pred HHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 5554432110 00 0 000001111 12223333 799997 7999999999999
Q ss_pred -CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 -VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 -lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.....+.++|..+.+.|.+||++||..
T Consensus 175 ~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~ 205 (248)
T PRK09580 175 GLDIDALKIVADGVNSLRDGKRSFIIVTHYQ 205 (248)
T ss_pred cCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 999999999999999987777777777753
No 298
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=4.9e-15 Score=151.58 Aligned_cols=150 Identities=15% Similarity=0.167 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc--cceEEEEEehhHHHHH-HHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV--KHRQRFHFHEAMLKIN-EHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~--~~k~rvhf~~fm~~v~-~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+|+||||||||+++|+|..++.. ...++|.|++.-..+. .... ....++.+++++|++. .+ .
T Consensus 40 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~-----~~~~~~~i~~~~q~~~-~~-~ 112 (265)
T PRK14252 40 HEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD-----PIEVRMRISMVFQKPN-PF-P 112 (265)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC-----HHHHhccEEEEccCCc-CC-c
Confidence 5789999999999999999999999986410 0356777765211100 0000 0011346899998743 33 3
Q ss_pred CcHHHHHHHHHhhhh-----H--HHHhc---------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-C
Q 007851 251 SKVMEWVAAEEKYKQ-----E--VQMKN---------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 251 ~tV~eni~~~~~~~~-----~--~~~~~---------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
.|+.+|+.+.....+ . ..... .+....++.+.+||+|+ .+|+||+||||++ +
T Consensus 113 ~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gL 192 (265)
T PRK14252 113 KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSAL 192 (265)
T ss_pred chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccC
Confidence 599999987542110 0 01111 11233455667899996 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+.....+.++|.++.. +.+||++||..
T Consensus 193 D~~~~~~l~~~l~~l~~-~~tiiivth~~ 220 (265)
T PRK14252 193 DPIATASIEELISDLKN-KVTILIVTHNM 220 (265)
T ss_pred CHHHHHHHHHHHHHHHh-CCEEEEEecCH
Confidence 99999999999999865 56666666653
No 299
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.61 E-value=1.3e-15 Score=170.28 Aligned_cols=145 Identities=14% Similarity=0.205 Sum_probs=100.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+||||||||||+++++|..+| .+|.|.+++. ++.+ .. ....++.+++++|+ +.+++.|
T Consensus 345 i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~---~~G~I~~~g~--~i~~----~~--~~~lr~~i~~v~Q~--~~lf~~t 411 (529)
T TIGR02857 345 VPPGERVALVGPSGAGKSTLLNLLLGFVDP---TEGSIAVNGV--PLAD----AD--ADSWRDQIAWVPQH--PFLFAGT 411 (529)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--ehhh----CC--HHHHHhheEEEcCC--CcccCcC
Confidence 357999999999999999999999999986 3456777662 3321 10 01123568999997 4567889
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHH-----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAV-----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~l-----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++||+.++.......+. ...+.+. ..+...+||||| ++|++|+||||++ +|+
T Consensus 412 i~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~ 491 (529)
T TIGR02857 412 IAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDA 491 (529)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 99999875332111110 0111222 222335799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+..+. .|.++|+.||+.
T Consensus 492 ~~~~~i~~~l~~~~-~~~t~i~itH~~ 517 (529)
T TIGR02857 492 ETEALVTEALRALA-QGRTVLLVTHRL 517 (529)
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEecCH
Confidence 99999999998875 456665555653
No 300
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.61 E-value=2.3e-15 Score=143.33 Aligned_cols=117 Identities=20% Similarity=0.247 Sum_probs=82.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|.||||||||||+++|+|..++ . ++.|.+++. ++... ... ...+.+++++| ++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~--~G~v~~~g~--~~~~~~~~~------~~~~~i~~~~q--------LS 84 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKP-D--SGEILVDGK--EVSFASPRD------ARRAGIAMVYQ--------LS 84 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CeEEEECCE--ECCcCCHHH------HHhcCeEEEEe--------cC
Confidence 47899999999999999999999999985 3 345655542 11100 000 01235788776 11
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+ .. .-.+|..+. .+|++|+||||+. +|+..+..+.++++++.++|.++|++||..
T Consensus 85 ~G~--------------~q-rl~laral~-------~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~ 142 (163)
T cd03216 85 VGE--------------RQ-MVEIARALA-------RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRL 142 (163)
T ss_pred HHH--------------HH-HHHHHHHHh-------cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 100 01 123555555 6899999999998 999999999999999987788877777764
No 301
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.61 E-value=3.2e-15 Score=152.39 Aligned_cols=144 Identities=19% Similarity=0.158 Sum_probs=96.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|+||||||||+++|+|.+++ .. +.|.+++. ++.. .. ....++.+++++|++ .++..|+
T Consensus 45 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~--G~i~i~g~--~i~~----~~--~~~~~~~i~~v~q~~--~l~~~tv 111 (257)
T cd03288 45 KPGQKVGICGRTGSGKSSLSLAFFRMVDI-FD--GKIVIDGI--DISK----LP--LHTLRSRLSIILQDP--ILFSGSI 111 (257)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcccCC-CC--CeEEECCE--Ehhh----CC--HHHHhhhEEEECCCC--cccccHH
Confidence 57899999999999999999999999875 33 45655542 2211 00 001124689999974 3445699
Q ss_pred HHHHHHHHhhhh--HHH--HhccHHHHHhH-----------hhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQ--EVQ--MKNILPAVADK-----------FLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~--~~~~L~~la~~-----------l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+|+........ ... ....+..+.+. ...+||+|+ .+|++|+||||+. +|+..
T Consensus 112 ~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~ 191 (257)
T cd03288 112 RFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191 (257)
T ss_pred HHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 998854311100 000 00112222222 235899996 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+.+++..+. +|.+||++||..
T Consensus 192 ~~~l~~~l~~~~-~~~tiii~sh~~ 215 (257)
T cd03288 192 ENILQKVVMTAF-ADRTVVTIAHRV 215 (257)
T ss_pred HHHHHHHHHHhc-CCCEEEEEecCh
Confidence 999999999874 477777777764
No 302
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=4.8e-15 Score=166.01 Aligned_cols=132 Identities=15% Similarity=0.176 Sum_probs=94.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.+++ . .|.|.+++. ..+++++|+. ..+..+||
T Consensus 25 ~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p-~--~G~i~~~~~-------------------~~i~~~~q~~-~~~~~~tv 81 (530)
T PRK15064 25 GGGNRYGLIGANGCGKSTFMKILGGDLEP-S--AGNVSLDPN-------------------ERLGKLRQDQ-FAFEEFTV 81 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEecCC-------------------CEEEEEeccC-CcCCCCcH
Confidence 47899999999999999999999999975 2 355655430 2478999974 46677899
Q ss_pred HHHHHHHHh-hhh-------------------------------------HHHHhcc-----HHH-HHhHhhhhhcccC-
Q 007851 254 MEWVAAEEK-YKQ-------------------------------------EVQMKNI-----LPA-VADKFLVDQHADQ- 288 (587)
Q Consensus 254 ~eni~~~~~-~~~-------------------------------------~~~~~~~-----L~~-la~~l~~~LSgGq- 288 (587)
.+|+.++.. ... ....... +.. ..++.+.+|||||
T Consensus 82 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~ 161 (530)
T PRK15064 82 LDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWK 161 (530)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHH
Confidence 999976421 000 0000011 111 1234568999997
Q ss_pred ----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 ----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+||+||||++ +|+..+..|.+++.. .|.+||++||..
T Consensus 162 qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 212 (530)
T PRK15064 162 LRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR 212 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH
Confidence 7999999999999 999999999888863 577776666753
No 303
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.60 E-value=6.1e-15 Score=150.56 Aligned_cols=147 Identities=18% Similarity=0.210 Sum_probs=96.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEE-----------EehhHHHHHHHHHHHhhhhhhcccceeeeec
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFH-----------FHEAMLKINEHMHRLWKNQVAEKSLRSSISG 242 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvh-----------f~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q 242 (587)
.+|+.++|+|||||||||||++++|..++ .. |.|. |.+ .++........ .....+++++|
T Consensus 24 ~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p-~~--G~I~~~~~~~~~~~~~~g--~~~~~~~~~~~----~~~~~i~~~~~ 94 (255)
T cd03236 24 REGQVLGLVGPNGIGKSTALKILAGKLKP-NL--GKFDDPPDWDEILDEFRG--SELQNYFTKLL----EGDVKVIVKPQ 94 (255)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCcCC-CC--ceEeeccccchhhhhccC--chhhhhhHHhh----hcccceeeecc
Confidence 57899999999999999999999999986 34 4442 222 11111100100 00123567777
Q ss_pred cCCCCCCCCcHHHHHHHHHhhhhH-HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 243 WITNLPFDSKVMEWVAAEEKYKQE-VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 243 ~~~~~~~~~tV~eni~~~~~~~~~-~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
.. ...+ .++.+++......... .... ..+....++.+.+||+|+ .+|++|+||||++ +|+
T Consensus 95 ~~-~~~~-~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~ 172 (255)
T cd03236 95 YV-DLIP-KAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDI 172 (255)
T ss_pred hh-ccCc-hHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH
Confidence 53 2222 3666666543221111 1111 112344566778999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+..++..+.++|.+||++||..
T Consensus 173 ~~~~~l~~~l~~l~~~~~tIIiiSHd~ 199 (255)
T cd03236 173 KQRLNAARLIRELAEDDNYVLVVEHDL 199 (255)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 999999999999987788777777763
No 304
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.60 E-value=3.6e-15 Score=168.41 Aligned_cols=145 Identities=17% Similarity=0.148 Sum_probs=99.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+||||||||||+++++|..+| . +|+|.+++. ++...-. ...++.+++++|+ +.+++.|
T Consensus 338 i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p-~--~G~i~~~g~--~~~~~~~------~~~~~~i~~v~q~--~~lf~~t 404 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDV-S--EGDIRFHDI--PLTKLQL------DSWRSRLAVVSQT--PFLFSDT 404 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcccCC-C--CCEEEECCE--EHhhCCH------HHHHhheEEEccC--Ceecccc
Confidence 357899999999999999999999999986 2 355666652 2221000 0113468999997 4566789
Q ss_pred HHHHHHHHHhhhhHHHHh-----ccHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMK-----NILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~-----~~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++||+.++.......+.. ..+.+.. .+...+||||| .+|+||+||||++ +|+
T Consensus 405 i~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~ 484 (569)
T PRK10789 405 VANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDG 484 (569)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCH
Confidence 999998763221111110 0111111 22234799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+..+. +|.++|++||+.
T Consensus 485 ~~~~~i~~~l~~~~-~~~tii~itH~~ 510 (569)
T PRK10789 485 RTEHQILHNLRQWG-EGRTVIISAHRL 510 (569)
T ss_pred HHHHHHHHHHHHHh-CCCEEEEEecch
Confidence 99999999998875 566666666654
No 305
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.60 E-value=3e-15 Score=173.25 Aligned_cols=143 Identities=14% Similarity=0.101 Sum_probs=96.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+||||||||||+++|.|..+| . +|.|.+++. ++.+.-+ ...++.+++++|+ +.+++.|
T Consensus 504 i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~--~G~I~idg~--~i~~~~~------~~lr~~i~~v~Q~--~~lF~gT 570 (711)
T TIGR00958 504 LHPGEVVALVGPSGSGKSTVAALLQNLYQP-T--GGQVLLDGV--PLVQYDH------HYLHRQVALVGQE--PVLFSGS 570 (711)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhccCC-C--CCEEEECCE--EHHhcCH------HHHHhhceEEecC--ccccccC
Confidence 357999999999999999999999999986 2 456666652 3321101 1123468999996 5678899
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++|||.++.......+. ...+.+..+++ ..+||||| ++|+||+|||||+ +|.
T Consensus 571 IreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~ 650 (711)
T TIGR00958 571 VRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDA 650 (711)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCH
Confidence 99999986432211111 11122222222 24799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+ .. ...+.|+|+.||+.
T Consensus 651 ~te~~i~~-~~--~~~~~TvIiItHrl 674 (711)
T TIGR00958 651 ECEQLLQE-SR--SRASRTVLLIAHRL 674 (711)
T ss_pred HHHHHHHH-hh--ccCCCeEEEEeccH
Confidence 99888877 22 23466766666663
No 306
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.60 E-value=4.3e-15 Score=167.18 Aligned_cols=132 Identities=20% Similarity=0.218 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.+++ . ..++|++|+...+++.+||
T Consensus 346 ~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p-~--~G~i~~~~---~----------------~~i~~v~q~~~~~~~~~tv 403 (552)
T TIGR03719 346 PPGGIVGVIGPNGAGKSTLFRMITGQEQP-D--SGTIKIGE---T----------------VKLAYVDQSRDALDPNKTV 403 (552)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCC-C--CeEEEECC---c----------------eEEEEEeCCccccCCCCcH
Confidence 57899999999999999999999999875 2 35665532 0 1479999975446677999
Q ss_pred HHHHHHHHhhhh----HHHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----EVQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 254 ~eni~~~~~~~~----~~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
.+|+.++....+ ...... .+. ...++.+.+||||+ .+|+||+||||++ +|+.....|.
T Consensus 404 ~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~ 483 (552)
T TIGR03719 404 WEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE 483 (552)
T ss_pred HHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Confidence 999987542111 111111 122 23566778999997 7999999999999 9999999999
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 007851 312 GIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 312 ~Ll~~L~~~G~vvV~TSn~ 330 (587)
++|..+ .|+ ||++||.
T Consensus 484 ~~l~~~--~~~-viivsHd 499 (552)
T TIGR03719 484 EALLEF--AGC-AVVISHD 499 (552)
T ss_pred HHHHHC--CCe-EEEEeCC
Confidence 999987 354 4455554
No 307
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=5.8e-15 Score=165.32 Aligned_cols=132 Identities=18% Similarity=0.262 Sum_probs=96.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| ..|.|.+++ ...++|++|+... ++..+|
T Consensus 343 ~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p---~~G~i~~~~-------------------~~~i~~~~q~~~~~~~~~~t 400 (530)
T PRK15064 343 EAGERLAIIGENGVGKTTLLRTLVGELEP---DSGTVKWSE-------------------NANIGYYAQDHAYDFENDLT 400 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECC-------------------ceEEEEEcccccccCCCCCc
Confidence 57899999999999999999999999875 245676643 1357999997533 445689
Q ss_pred HHHHHHHHHhhh-hHHHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 253 VMEWVAAEEKYK-QEVQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 253 V~eni~~~~~~~-~~~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
+.+|+.+..... ....... .+ ....++.+.+||||| .+|+||+||||++ +|+.....|.++
T Consensus 401 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~ 480 (530)
T PRK15064 401 LFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMA 480 (530)
T ss_pred HHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHH
Confidence 999986421100 0111111 12 245677788999997 7999999999999 999999999999
Q ss_pred HHHHHhCCcEEEEecCC
Q 007851 314 VSRLLSTGTVLVATSNR 330 (587)
Q Consensus 314 l~~L~~~G~vvV~TSn~ 330 (587)
+..+ .| +||++||.
T Consensus 481 l~~~--~~-tvi~vsHd 494 (530)
T PRK15064 481 LEKY--EG-TLIFVSHD 494 (530)
T ss_pred HHHC--CC-EEEEEeCC
Confidence 9876 34 55555554
No 308
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=4.7e-15 Score=167.03 Aligned_cols=133 Identities=18% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.++|+||||||||||+++|+|.++| . .|.|.+++ . ..+||++|+...+++.+|
T Consensus 347 i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p-~--~G~i~~~~---~----------------~~i~~v~q~~~~~~~~~t 404 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQP-D--SGTIKIGE---T----------------VKLAYVDQSRDALDPNKT 404 (556)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CeEEEECC---c----------------eEEEEEeCchhhcCCCCC
Confidence 357899999999999999999999999975 2 45665532 0 147999997545667799
Q ss_pred HHHHHHHHHhhhh----HHHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 253 VMEWVAAEEKYKQ----EVQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 253 V~eni~~~~~~~~----~~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
|.+|+.+...... ...... .+. ...++.+.+||||+ .+|+||+||||++ +|+.....|
T Consensus 405 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 484 (556)
T PRK11819 405 VWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRAL 484 (556)
T ss_pred HHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHH
Confidence 9999987542111 111111 122 23566788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecC
Q 007851 311 SGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn 329 (587)
.++|..+ .|++|++||+
T Consensus 485 ~~~l~~~--~~tvi~vtHd 501 (556)
T PRK11819 485 EEALLEF--PGCAVVISHD 501 (556)
T ss_pred HHHHHhC--CCeEEEEECC
Confidence 9999987 3555555544
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.59 E-value=5.7e-15 Score=166.38 Aligned_cols=131 Identities=17% Similarity=0.156 Sum_probs=93.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . .|.|.++. ...+|+++|++ .+++.+||
T Consensus 31 ~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p-~--~G~i~~~~-------------------~~~i~~v~Q~~-~~~~~~tv 87 (556)
T PRK11819 31 FPGAKIGVLGLNGAGKSTLLRIMAGVDKE-F--EGEARPAP-------------------GIKVGYLPQEP-QLDPEKTV 87 (556)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEecC-------------------CCEEEEEecCC-CCCCCCcH
Confidence 57899999999999999999999999985 3 35555432 12579999974 45667899
Q ss_pred HHHHHHHHhh-h-------------hHH------------H------------HhccHHH--------HHhHhhhhhccc
Q 007851 254 MEWVAAEEKY-K-------------QEV------------Q------------MKNILPA--------VADKFLVDQHAD 287 (587)
Q Consensus 254 ~eni~~~~~~-~-------------~~~------------~------------~~~~L~~--------la~~l~~~LSgG 287 (587)
.+|+.++... . ... . ....+.. ..++.+.+||||
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 9999865321 0 000 0 0000111 124556799999
Q ss_pred C-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 288 Q-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 288 q-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
| .+|+||+||||++ +|+.....+.++|..+ .+ +||++||.
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~--~~-tviiisHd 219 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY--PG-TVVAVTHD 219 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhC--CC-eEEEEeCC
Confidence 7 7999999999999 9999999999999886 24 45455554
No 310
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.59 E-value=6.9e-15 Score=146.04 Aligned_cols=132 Identities=11% Similarity=0.010 Sum_probs=90.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEE-EehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFH-FHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvh-f~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++++|..++ .+| .|. +++. .+ .++ + ...+++.+|
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~-~sG--~i~~~~~~--~~----------------~~~---~-~~~l~~~lt 65 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDAP-DEG--DFIGLRGD--AL----------------PLG---A-NSFILPGLT 65 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC-CCC--CEEEecCc--ee----------------ccc---c-ccccCCcCc
Confidence 46899999999999999999999999875 343 443 3331 00 001 1 123566789
Q ss_pred HHHHHHHHHhhhh--HHH------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 253 VMEWVAAEEKYKQ--EVQ------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 253 V~eni~~~~~~~~--~~~------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
+.+|+.+.....+ ... ....+....+..+.+||+|+ .+|++|++|||+. +|...+..+..
T Consensus 66 v~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~ 145 (213)
T PRK15177 66 GEENARMMASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQA 145 (213)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHH
Confidence 9999987654322 111 11123445677788999997 7999999999977 99999999988
Q ss_pred HHHHHHhCCcEEEEecCCC
Q 007851 313 IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 313 Ll~~L~~~G~vvV~TSn~~ 331 (587)
++.+..+. .++|++||..
T Consensus 146 ~l~~~~~~-~~ii~vsH~~ 163 (213)
T PRK15177 146 ALACQLQQ-KGLIVLTHNP 163 (213)
T ss_pred HHHHHhhC-CcEEEEECCH
Confidence 77554433 3455556653
No 311
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=4.6e-15 Score=169.60 Aligned_cols=132 Identities=17% Similarity=0.177 Sum_probs=92.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| .. |.|.++. ...+||++|+.. .+....+
T Consensus 336 ~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p-~~--G~i~~~~-------------------~~~igy~~Q~~~~~l~~~~~ 393 (638)
T PRK10636 336 VPGSRIGLLGRNGAGKSTLIKLLAGELAP-VS--GEIGLAK-------------------GIKLGYFAQHQLEFLRADES 393 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--CeEEECC-------------------CEEEEEecCcchhhCCccch
Confidence 57899999999999999999999999975 33 4555432 014789998642 2344567
Q ss_pred HHHHHHHHHhhhhHHHHhc-----cH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 253 VMEWVAAEEKYKQEVQMKN-----IL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~-----~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
+.+++.............. .+ ....++.+.+||||+ .+|+||+|||||+ ||+.....|.++|
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L 473 (638)
T PRK10636 394 PLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL 473 (638)
T ss_pred HHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHH
Confidence 7777642110000111111 12 234567788999997 7999999999999 9999999999999
Q ss_pred HHHHhCCcEEEEecCC
Q 007851 315 SRLLSTGTVLVATSNR 330 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~ 330 (587)
..+ .| +||++||.
T Consensus 474 ~~~--~g-tvi~vSHd 486 (638)
T PRK10636 474 IDF--EG-ALVVVSHD 486 (638)
T ss_pred HHc--CC-eEEEEeCC
Confidence 887 46 45455554
No 312
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.59 E-value=6.1e-15 Score=167.12 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=99.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++++|..+| . +|.|.+++. ++.. + . ....++.+++++|++ .+++.|+
T Consensus 359 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~-~--~G~i~~~g~--~~~~-~---~--~~~~~~~i~~v~q~~--~lf~~ti 425 (585)
T TIGR01192 359 KAGQTVAIVGPTGAGKTTLINLLQRVYDP-T--VGQILIDGI--DINT-V---T--RESLRKSIATVFQDA--GLFNRSI 425 (585)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHccCCCC-C--CCEEEECCE--Ehhh-C---C--HHHHHhheEEEccCC--ccCcccH
Confidence 57999999999999999999999999986 2 355666552 2221 0 0 001124689999973 4567899
Q ss_pred HHHHHHHHhhhhHHHHh-----ccHHH-----------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQMK-----NILPA-----------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~-----~~L~~-----------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+||+.++.......+.. ..+.+ ...+....||||| .+|++|+||||++ +|..
T Consensus 426 ~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~ 505 (585)
T TIGR01192 426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVE 505 (585)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 99998763211111100 01111 1222335799997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.+.+..+.+ |.++|++||+.
T Consensus 506 ~~~~i~~~l~~~~~-~~tvI~isH~~ 530 (585)
T TIGR01192 506 TEARVKNAIDALRK-NRTTFIIAHRL 530 (585)
T ss_pred HHHHHHHHHHHHhC-CCEEEEEEcCh
Confidence 99999999988854 66666666663
No 313
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.59 E-value=5.3e-15 Score=170.69 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=100.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+|+||||||||+++++|..+| .+|+|.+++. ++.. +. ....++.+++++|+ ..+++.|+
T Consensus 481 ~~G~~vaivG~sGsGKSTL~~ll~g~~~p---~~G~I~idg~--~i~~----~~--~~~~r~~i~~v~q~--~~lf~~ti 547 (694)
T TIGR01846 481 KPGEFIGIVGPSGSGKSTLTKLLQRLYTP---QHGQVLVDGV--DLAI----AD--PAWLRRQMGVVLQE--NVLFSRSI 547 (694)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECCE--ehhh----CC--HHHHHHhCeEEccC--CeehhhhH
Confidence 57999999999999999999999999986 2456666653 2221 00 00113468999996 56778899
Q ss_pred HHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
+||+.++.......+. ...+.+..+++ ..+||||| ++|+||+||||++ +|..
T Consensus 548 ~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~ 627 (694)
T TIGR01846 548 RDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYE 627 (694)
T ss_pred HHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHH
Confidence 9999875321111110 11122222222 34799997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....+.+.+..+. .|.++|++||+.
T Consensus 628 ~~~~i~~~l~~~~-~~~t~i~itH~~ 652 (694)
T TIGR01846 628 SEALIMRNMREIC-RGRTVIIIAHRL 652 (694)
T ss_pred HHHHHHHHHHHHh-CCCEEEEEeCCh
Confidence 9999999999885 466666666654
No 314
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.58 E-value=1e-14 Score=167.19 Aligned_cols=146 Identities=15% Similarity=0.168 Sum_probs=108.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH----HHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE----HMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~----~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
.+|+.++|+|+||||||||+++++|..++ ..+++.|++. ++.. ..... .++.+++++|++ .+++
T Consensus 32 ~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~---~~G~i~~~g~--~i~~~~~~~~~~~------~~~~i~~v~q~~-~l~~ 99 (648)
T PRK10535 32 YAGEMVAIVGASGSGKSTLMNILGCLDKP---TSGTYRVAGQ--DVATLDADALAQL------RREHFGFIFQRY-HLLS 99 (648)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCE--EcCcCCHHHHHHH------HhccEEEEeCCc-ccCC
Confidence 57899999999999999999999999985 3467777763 2211 01011 124689999974 5667
Q ss_pred CCcHHHHHHHHHhhhh----H--HHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 250 DSKVMEWVAAEEKYKQ----E--VQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~----~--~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
..|+.||+.+.....+ . .... ..+....+..+.+||+|+ .+|++||||||+. +|+..
T Consensus 100 ~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s 179 (648)
T PRK10535 100 HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHS 179 (648)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHH
Confidence 7899999987543211 0 0111 123445667778999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+.++++++.++|.++|++||..
T Consensus 180 ~~~l~~ll~~l~~~g~tilivsH~~ 204 (648)
T PRK10535 180 GEEVMAILHQLRDRGHTVIIVTHDP 204 (648)
T ss_pred HHHHHHHHHHHHhcCCEEEEECCCH
Confidence 9999999999987788777777764
No 315
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.58 E-value=5.6e-15 Score=181.29 Aligned_cols=147 Identities=15% Similarity=0.133 Sum_probs=108.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|..++.....|.|.+++. ++.. . .++.++|++|+. ..++.+||
T Consensus 787 ~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~--~~~~---~-------~~~~i~yv~Q~~-~~~~~~Tv 853 (1394)
T TIGR00956 787 KPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR--PLDS---S-------FQRSIGYVQQQD-LHLPTSTV 853 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE--ECCh---h-------hhcceeeecccc-cCCCCCCH
Confidence 578999999999999999999999998621113466777662 2211 1 124679999973 46778999
Q ss_pred HHHHHHHHhhhh-----HHH----Hhc-----cHHHHHhHhhh----hhcccC-----------CCcc-EEEEeCCCC-C
Q 007851 254 MEWVAAEEKYKQ-----EVQ----MKN-----ILPAVADKFLV----DQHADQ-----------RGAS-ILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~~~-----~~~----~~~-----~L~~la~~l~~----~LSgGq-----------~~p~-LL~LDEPt~-l 302 (587)
+||+.+....+. ..+ .+. .+...++..++ .||||| .+|+ ||+||||++ +
T Consensus 854 ~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgL 933 (1394)
T TIGR00956 854 RESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGL 933 (1394)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCC
Confidence 999998654321 111 111 12344555555 699997 6996 999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
|...+..+.++|+++.++|.+||+|+|.+..
T Consensus 934 D~~~~~~i~~~L~~la~~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 934 DSQTAWSICKLMRKLADHGQAILCTIHQPSA 964 (1394)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEecCCCH
Confidence 9999999999999998889999999998643
No 316
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.58 E-value=7.9e-15 Score=165.43 Aligned_cols=144 Identities=17% Similarity=0.209 Sum_probs=99.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|+||+|||||||++++.+..++ ..|+..+ ++ .++..-- ....++.+++|+|+ +.+++.|
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~-~~G~I~i--dg--~dI~~i~------~~~lr~~I~~V~Qd--~~LF~~T 418 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYDP-TSGEILI--DG--IDIRDIS------LDSLRKRIGIVSQD--PLLFSGT 418 (567)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCeEEE--CC--EehhhcC------HHHHHHhccEEccc--ceeeccc
Confidence 357999999999999999999999999986 3444444 44 2332110 01123568999986 5777899
Q ss_pred HHHHHHHHHhhhhHHHHhc-----cHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMKN-----ILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~-----~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+++||.++.......+... .+.+...++ ...||||| ++|+||+|||+|+ +|.
T Consensus 419 I~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~ 498 (567)
T COG1132 419 IRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDT 498 (567)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCH
Confidence 9999999854322111110 111111111 23799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+...+.+.+..+. +|.|+++.+||
T Consensus 499 ~tE~~I~~~l~~l~-~~rT~iiIaHR 523 (567)
T COG1132 499 ETEALIQDALKKLL-KGRTTLIIAHR 523 (567)
T ss_pred HhHHHHHHHHHHHh-cCCEEEEEecc
Confidence 99999999999887 45444445565
No 317
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.58 E-value=1.3e-14 Score=160.22 Aligned_cols=133 Identities=14% Similarity=0.099 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| ..|.|.+++. .. .+++ . ..+.+.+|+
T Consensus 48 ~~GEivgIiGpNGSGKSTLLkiLaGLl~P---~sGeI~I~G~--~~----------------~i~~---~-~~l~~~lTV 102 (549)
T PRK13545 48 PEGEIVGIIGLNGSGKSTLSNLIAGVTMP---NKGTVDIKGS--AA----------------LIAI---S-SGLNGQLTG 102 (549)
T ss_pred eCCCEEEEEcCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ee----------------eEEe---c-cccCCCCcH
Confidence 47899999999999999999999999975 2456666542 00 0111 0 123456899
Q ss_pred HHHHHHHHhhhh--HHH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.+.....+ ... .. ..+....++.+.+||||+ .+|+||+||||++ +|+..+..+
T Consensus 103 ~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~L 182 (549)
T PRK13545 103 IENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKC 182 (549)
T ss_pred HHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 999976432211 110 11 123445677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|..+.++|.+||++||..
T Consensus 183 lelL~el~~~G~TIIIVSHdl 203 (549)
T PRK13545 183 LDKMNEFKEQGKTIFFISHSL 203 (549)
T ss_pred HHHHHHHHhCCCEEEEEECCH
Confidence 999999877788777777764
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.58 E-value=9.9e-15 Score=164.30 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=92.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.++| .. |.|.++. ...++|++|++ .+++.+||
T Consensus 29 ~~Ge~~~liG~NGsGKSTLl~~i~G~~~p-~~--G~i~~~~-------------------~~~i~~v~Q~~-~~~~~~tv 85 (552)
T TIGR03719 29 FPGAKIGVLGLNGAGKSTLLRIMAGVDKE-FN--GEARPAP-------------------GIKVGYLPQEP-QLDPTKTV 85 (552)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEecC-------------------CCEEEEEeccC-CCCCCCcH
Confidence 57899999999999999999999999975 33 4554432 12579999974 45667899
Q ss_pred HHHHHHHHhh-hh---------------HHH----------Hh------------ccHHHH--------HhHhhhhhccc
Q 007851 254 MEWVAAEEKY-KQ---------------EVQ----------MK------------NILPAV--------ADKFLVDQHAD 287 (587)
Q Consensus 254 ~eni~~~~~~-~~---------------~~~----------~~------------~~L~~l--------a~~l~~~LSgG 287 (587)
.+|+.++... .+ ... .. ..+..+ .++.+.+||||
T Consensus 86 ~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgG 165 (552)
T TIGR03719 86 RENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGG 165 (552)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHH
Confidence 9999875321 00 000 00 000111 24456799999
Q ss_pred C-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 288 Q-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 288 q-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+ .+|+||+||||++ +|+..+..|.++|..+ .+ +||++||.
T Consensus 166 qkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~-tvIiisHd 217 (552)
T TIGR03719 166 ERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PG-TVVAVTHD 217 (552)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CC-eEEEEeCC
Confidence 7 7999999999998 9999999999998876 24 45445554
No 319
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.1e-15 Score=165.01 Aligned_cols=148 Identities=14% Similarity=0.112 Sum_probs=101.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCC--CCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWIT--NLPF 249 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~--~~~~ 249 (587)
...|+.++|+||||||||||+++|+|..+| .+|.|.+++. ++.. .... ..+..++|++|+.. .++.
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~i~~~~~~~------~~~~~i~~~~q~~~~~~~~~ 339 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREK---SAGTITLHGK--KINNHNANE------AINHGFALVTEERRSTGIYA 339 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcC---CccEEEECCE--ECCCCCHHH------HHHCCCEEcCCchhhCCccc
Confidence 357899999999999999999999999975 2456666552 2210 0000 01245789988742 3566
Q ss_pred CCcHHHHH-----HHHHhh----hhH---HHHhcc-----HH-HHHhHhhhhhcccC-----------CCccEEEEeCCC
Q 007851 250 DSKVMEWV-----AAEEKY----KQE---VQMKNI-----LP-AVADKFLVDQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 250 ~~tV~eni-----~~~~~~----~~~---~~~~~~-----L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt 300 (587)
.+++.+|+ .+.... ... ...... +. ...++.+.+||||| .+|+||+|||||
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt 419 (491)
T PRK10982 340 YLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPT 419 (491)
T ss_pred CCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 67776663 221110 000 001111 21 23466778999997 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+ +|+.....+.+++..+.+.|.+||++||..
T Consensus 420 ~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~ 451 (491)
T PRK10982 420 RGIDVGAKFEIYQLIAELAKKDKGIIIISSEM 451 (491)
T ss_pred cccChhHHHHHHHHHHHHHHCCCEEEEECCCh
Confidence 9 999999999999999988888887777764
No 320
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.57 E-value=1.3e-14 Score=166.39 Aligned_cols=150 Identities=13% Similarity=0.123 Sum_probs=103.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++++|..++ . +|.+.+.. ++.+++++|++ .++..|+
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~-~--~G~i~~~~-------------------~~~i~~v~Q~~--~l~~~tv 531 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPV-Y--GGRLTKPA-------------------KGKLFYVPQRP--YMTLGTL 531 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CCeEeecC-------------------CCcEEEECCCC--CCCCcCH
Confidence 57899999999999999999999999875 2 34554321 24589999974 3445599
Q ss_pred HHHHHHHHhhh-------hHHHHh-----ccHHHHHhHh---------hhhhcccC-----------CCccEEEEeCCCC
Q 007851 254 MEWVAAEEKYK-------QEVQMK-----NILPAVADKF---------LVDQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 254 ~eni~~~~~~~-------~~~~~~-----~~L~~la~~l---------~~~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
+||+.++.... ...... ..+....++. ..+||||| .+|++|+||||++
T Consensus 532 ~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts 611 (659)
T TIGR00954 532 RDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTS 611 (659)
T ss_pred HHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 99998753210 011111 1122333332 25899997 7999999999999
Q ss_pred -CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhhh
Q 007851 302 -VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYR 368 (587)
Q Consensus 302 -lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR 368 (587)
+|+.....+.+++.+ .|.++|++||+. +.++.+.+++.++++..|+
T Consensus 612 ~LD~~~~~~l~~~l~~---~~~tvI~isH~~------------------~~~~~~d~il~l~~~g~~~ 658 (659)
T TIGR00954 612 AVSVDVEGYMYRLCRE---FGITLFSVSHRK------------------SLWKYHEYLLYMDGRGGYQ 658 (659)
T ss_pred CCCHHHHHHHHHHHHH---cCCEEEEEeCch------------------HHHHhCCEEEEEeCCCCcc
Confidence 999999888887765 377777777764 1234455677777665554
No 321
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.57 E-value=1.7e-14 Score=137.01 Aligned_cols=145 Identities=23% Similarity=0.260 Sum_probs=102.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.+-++||||||||||+-.++|.++. .+.|.|.+...+-. ..+.+. +..+|+.|++ ..++-|.|
T Consensus 23 ~aGe~~HliGPNGaGKSTLLA~lAGm~~~----sGsi~~~G~~l~~~-~~~eLA-------rhRAYLsQqq-~p~f~mpV 89 (248)
T COG4138 23 RAGEILHLVGPNGAGKSTLLARMAGMTSG----SGSIQFAGQPLEAW-SATELA-------RHRAYLSQQQ-TPPFAMPV 89 (248)
T ss_pred ccceEEEEECCCCccHHHHHHHHhCCCCC----CceEEECCcchhHH-hHhHHH-------HHHHHHhhcc-CCcchhhh
Confidence 57899999999999999999999999874 45666666432211 122222 1235666653 44566788
Q ss_pred HHHHHHHHhhhhHHH----Hh--ccHHHHHhHhhhhhcccC------------------CCccEEEEeCCCC-CCHHHHH
Q 007851 254 MEWVAAEEKYKQEVQ----MK--NILPAVADKFLVDQHADQ------------------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 254 ~eni~~~~~~~~~~~----~~--~~L~~la~~l~~~LSgGq------------------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
..++.+......... .. -.+.+...+...+||||+ -..++|++|||.+ +|++...
T Consensus 90 ~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~ 169 (248)
T COG4138 90 WHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQS 169 (248)
T ss_pred hhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHH
Confidence 888876543322111 11 122334455667999996 3457999999998 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.|-+++.+++..|.+||+++|..
T Consensus 170 aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 170 ALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred HHHHHHHHHHhCCcEEEEeccch
Confidence 99999999999999999999964
No 322
>PLN03140 ABC transporter G family member; Provisional
Probab=99.57 E-value=8.7e-15 Score=179.61 Aligned_cols=146 Identities=18% Similarity=0.174 Sum_probs=107.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|..++. ...|.|.+++. +.... . .++.+||++|+ ...++.+||
T Consensus 904 ~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~--~~~~~--~-------~~~~igyv~Q~-d~~~~~lTV 970 (1470)
T PLN03140 904 RPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGF--PKKQE--T-------FARISGYCEQN-DIHSPQVTV 970 (1470)
T ss_pred ECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCc--cCChH--H-------hhhheEEEccc-cccCCCCcH
Confidence 578999999999999999999999986531 12356666653 11110 0 12357999997 356778999
Q ss_pred HHHHHHHHhhh-----hHHH----Hhc-----cHHHHHhHhh-----hhhcccC-----------CCccEEEEeCCCC-C
Q 007851 254 MEWVAAEEKYK-----QEVQ----MKN-----ILPAVADKFL-----VDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 254 ~eni~~~~~~~-----~~~~----~~~-----~L~~la~~l~-----~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
+||+.+....+ ...+ .+. .+...++..+ ..||||| .+|+||||||||+ |
T Consensus 971 ~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgL 1050 (1470)
T PLN03140 971 RESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL 1050 (1470)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Confidence 99999865321 0111 111 2344566665 4799997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
|...+..+.++|+++.+.|.+||+|+|.+.
T Consensus 1051 D~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~ 1080 (1470)
T PLN03140 1051 DARAAAIVMRTVRNTVDTGRTVVCTIHQPS 1080 (1470)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 999999999999999988998888888763
No 323
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=1.1e-14 Score=158.20 Aligned_cols=159 Identities=14% Similarity=0.198 Sum_probs=110.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.|+|+|+|||||||+++++..... .+|+++| ++ .++.+ .. ....++.+|+|||+ ..+|+.|
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~LlrF~d--~sG~I~I--dG--~dik~----~~--~~SlR~~Ig~VPQd--~~LFndT 440 (591)
T KOG0057|consen 375 IPKGEKVAIVGSNGSGKSTILRLLLRFFD--YSGSILI--DG--QDIKE----VS--LESLRQSIGVVPQD--SVLFNDT 440 (591)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHHHhc--cCCcEEE--CC--eeHhh----hC--hHHhhhheeEeCCc--ccccchh
Confidence 35789999999999999999999999986 2455555 44 23321 11 11234679999996 6889999
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHH-----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAV-----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~l-----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|..||.++.......+. ...+.+. ..+....||||| ++|+|++|||+|+ +|-
T Consensus 441 Il~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~ 520 (591)
T KOG0057|consen 441 ILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDS 520 (591)
T ss_pred HHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccch
Confidence 99999997654332111 1122222 333344799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
.+...|.+.+.... .|.|+|+.-|+ .+++++.-+|+-++.+
T Consensus 521 ~TE~~i~~~i~~~~-~~rTvI~IvH~------------------l~ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 521 ETEREILDMIMDVM-SGRTVIMIVHR------------------LDLLKDFDKIIVLDNG 561 (591)
T ss_pred hhHHHHHHHHHHhc-CCCeEEEEEec------------------chhHhcCCEEEEEECC
Confidence 99888888888843 45555444444 3466666677777766
No 324
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.56 E-value=6.4e-15 Score=163.38 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=98.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCC-CCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPF-DSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~-~~t 252 (587)
.+|+.++|+||||||||||+++++|..++. .+|.|.+++. .+.... ..+ ..+..+++++|+....+. ..+
T Consensus 284 ~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~--~~G~i~~~g~--~~~~~~-~~~----~~~~~i~~v~q~~~~~~~~~~~ 354 (490)
T PRK10938 284 NPGEHWQIVGPNGAGKSTLLSLITGDHPQG--YSNDLTLFGR--RRGSGE-TIW----DIKKHIGYVSSSLHLDYRVSTS 354 (490)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCCCcc--cCCeEEEecc--cCCCCC-CHH----HHHhhceEECHHHHhhcccCCc
Confidence 578999999999999999999999976531 2456766652 110000 000 012458999986432222 356
Q ss_pred HHHHHHHHHh----h----hh--HHHHhc-----cHHH-HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEK----Y----KQ--EVQMKN-----ILPA-VADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~----~----~~--~~~~~~-----~L~~-la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+.+++.+... . .. ...... .+.. .+++.+.+||||| .+|+||+||||++ +|+
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~ 434 (490)
T PRK10938 355 VRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDP 434 (490)
T ss_pred HHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 6666543210 0 00 011111 2333 5677788999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCC-cEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTG-TVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G-~vvV~TSn~~ 331 (587)
..+..+.++|..+.++| ++||++||..
T Consensus 435 ~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 435 LNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 99999999999998775 4466666653
No 325
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.56 E-value=1.4e-14 Score=155.98 Aligned_cols=145 Identities=17% Similarity=0.149 Sum_probs=103.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|++++|+||+|||||||.+++.|..+| ..|+.|+ ++. ++ .++. ...-.+.+||++|+ -.+|+.||
T Consensus 360 ~~G~~lgIIGPSgSGKSTLaR~lvG~w~p-~~G~VRL--Dga--~l----~qWd--~e~lG~hiGYLPQd--VeLF~GTI 426 (580)
T COG4618 360 QAGEALGIIGPSGSGKSTLARLLVGIWPP-TSGSVRL--DGA--DL----RQWD--REQLGRHIGYLPQD--VELFDGTI 426 (580)
T ss_pred cCCceEEEECCCCccHHHHHHHHHccccc-CCCcEEe--cch--hh----hcCC--HHHhccccCcCccc--ceecCCcH
Confidence 56899999999999999999999999986 4566665 432 22 1221 12234689999997 46789999
Q ss_pred HHHHHHHH-hhhhHH--H--HhccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEE-KYKQEV--Q--MKNILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~-~~~~~~--~--~~~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.|||+-.. ...... + ......++.-+++ ..||||| .+|.+++||||-+ ||..
T Consensus 427 aeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 427 AENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 99997322 111110 0 0001112221221 3799997 7999999999998 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
....|.+-+..+.++|+++|+.+||+
T Consensus 507 GE~AL~~Ai~~~k~rG~~vvviaHRP 532 (580)
T COG4618 507 GEAALAAAILAAKARGGTVVVIAHRP 532 (580)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEecCH
Confidence 99999999999999999888888875
No 326
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.56 E-value=2.5e-14 Score=175.66 Aligned_cols=151 Identities=14% Similarity=0.141 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCc-ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGI-VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~-~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|||||||||||++|+|...+. ...+|.|.+++. ++.. ... ..++.+++++|+ ...++.+|
T Consensus 85 ~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~--~~~~-~~~------~~r~~i~yv~Q~-d~~~~~lT 154 (1394)
T TIGR00956 85 KPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGI--TPEE-IKK------HYRGDVVYNAET-DVHFPHLT 154 (1394)
T ss_pred ECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCE--ehHH-HHh------hcCceeEEeccc-cccCCCCC
Confidence 579999999999999999999999986310 113578888773 2211 111 112458999997 45677899
Q ss_pred HHHHHHHHHhhhh---------HHH-----Hhcc-----HHHHHhH-----hhhhhcccC-----------CCccEEEEe
Q 007851 253 VMEWVAAEEKYKQ---------EVQ-----MKNI-----LPAVADK-----FLVDQHADQ-----------RGASILCFD 297 (587)
Q Consensus 253 V~eni~~~~~~~~---------~~~-----~~~~-----L~~la~~-----l~~~LSgGq-----------~~p~LL~LD 297 (587)
|+|++.++...+. ..+ .+.. |...++. .+..||||| .+|+|||+|
T Consensus 155 V~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllD 234 (1394)
T TIGR00956 155 VGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWD 234 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEe
Confidence 9999998754220 111 0111 2222333 235799998 799999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCCccc
Q 007851 298 EIQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRAPWD 334 (587)
Q Consensus 298 EPt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~Ped 334 (587)
||++ ||...+..+.++|+.+.++ |.++|+|+|.+.++
T Consensus 235 EPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~ 273 (1394)
T TIGR00956 235 NATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQD 273 (1394)
T ss_pred CCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHH
Confidence 9999 9999999999999999874 88888888776443
No 327
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.55 E-value=2.2e-14 Score=160.40 Aligned_cols=144 Identities=17% Similarity=0.192 Sum_probs=103.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+||+.++|+||+|+||||+..++-....|. +|+|..++. ++.+--|... ++.+|+|-|+ +.+|..|
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY~Pt---sG~IllDG~--~i~~~~~~~l------r~~Ig~V~QE--PvLFs~s 557 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFYDPT---SGRILLDGV--PISDINHKYL------RRKIGLVGQE--PVLFSGS 557 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCC---CCeEEECCe--ehhhcCHHHH------HHHeeeeecc--ceeeccc
Confidence 3689999999999999999999999999862 456666663 3322112222 2468998885 7899999
Q ss_pred HHHHHHHHHhhhhHHHHhcc-----HHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMKNI-----LPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~-----L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+.|||.|+.......+.... ..++. .+...+||||| ++|.||+|||-|+ ||.
T Consensus 558 I~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDa 637 (716)
T KOG0058|consen 558 IRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDA 637 (716)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcch
Confidence 99999998763222211110 01111 12223899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
.....+.+.+.++.+..+|+|++|.
T Consensus 638 eSE~lVq~aL~~~~~~rTVlvIAHR 662 (716)
T KOG0058|consen 638 ESEYLVQEALDRLMQGRTVLVIAHR 662 (716)
T ss_pred hhHHHHHHHHHHhhcCCeEEEEehh
Confidence 9999999999988777556666554
No 328
>PLN03140 ABC transporter G family member; Provisional
Probab=99.55 E-value=2e-14 Score=176.48 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+|||||||||||++|+|.+++...-.|.|.+++. ++.. .. .++.++|++|+ ...++.+||
T Consensus 189 ~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~--~~~~----~~-----~~~~i~yv~Q~-d~~~~~lTV 256 (1470)
T PLN03140 189 KPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGY--RLNE----FV-----PRKTSAYISQN-DVHVGVMTV 256 (1470)
T ss_pred eCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE--echh----hc-----ccceeEEeccc-ccCCCcCcH
Confidence 579999999999999999999999998752122577888763 2211 10 12468999997 456778999
Q ss_pred HHHHHHHHhhhh------------HHHH----------------------------hccH-----HHH-----HhHhhhh
Q 007851 254 MEWVAAEEKYKQ------------EVQM----------------------------KNIL-----PAV-----ADKFLVD 283 (587)
Q Consensus 254 ~eni~~~~~~~~------------~~~~----------------------------~~~L-----~~l-----a~~l~~~ 283 (587)
+|++.+.....+ ..+. +..+ ... .+..+..
T Consensus 257 ~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rg 336 (1470)
T PLN03140 257 KETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG 336 (1470)
T ss_pred HHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccC
Confidence 999998754321 0000 0011 111 1334468
Q ss_pred hcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHh-CCcEEEEecCCCccc
Q 007851 284 QHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLS-TGTVLVATSNRAPWD 334 (587)
Q Consensus 284 LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~-~G~vvV~TSn~~Ped 334 (587)
||||| .+|++||+|||++ ||...+..+.++|+.+.+ .|.++|+++|.+..+
T Consensus 337 lSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~ 400 (1470)
T PLN03140 337 ISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPE 400 (1470)
T ss_pred CCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHH
Confidence 99997 6999999999999 999999999999999976 478888888765433
No 329
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.55 E-value=7.1e-15 Score=143.69 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=106.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 251 (587)
...++.|-++|.||+|||||++.++|.+.+ +.|++.| .+ .++.+... ..+...++-|||++. ...+.+
T Consensus 29 I~~g~FvtViGsNGAGKSTlln~iaG~l~~-t~G~I~I--dg--~dVtk~~~------~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 29 IAEGDFVTVIGSNGAGKSTLLNAIAGDLKP-TSGQILI--DG--VDVTKKSV------AKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred ecCCceEEEEcCCCccHHHHHHHhhCcccc-CCceEEE--Cc--eecccCCH------HHHhhHHHHHhcchhhCCcccc
Confidence 357899999999999999999999999986 3554444 43 23322110 111234667899874 467789
Q ss_pred cHHHHHHHHHhhhh-----------H-HH-------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC
Q 007851 252 KVMEWVAAEEKYKQ-----------E-VQ-------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 252 tV~eni~~~~~~~~-----------~-~~-------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
|+.||+..+..... . .. ....+....+..+.-||||| +.|+||+|||=|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 99999987643210 0 00 11234455666677899997 7999999999998
Q ss_pred -CCHHHHHHHHHHHHHHHhCC-c-EEEEecCCC
Q 007851 302 -VDVFAIVALSGIVSRLLSTG-T-VLVATSNRA 331 (587)
Q Consensus 302 -lD~~~a~~L~~Ll~~L~~~G-~-vvV~TSn~~ 331 (587)
+||..+..++++=.++.++. . ++++|||..
T Consensus 178 ALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~ 210 (263)
T COG1101 178 ALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME 210 (263)
T ss_pred cCCcchHHHHHHHHHHHHHhcCCceEEEeccHH
Confidence 99999999999999998764 4 677777754
No 330
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.55 E-value=2.9e-14 Score=158.65 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=96.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|..++|+||||+||||||++|.|.+.+. .|.|+... .-.+||..|+......+.|
T Consensus 345 i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~---~G~v~~g~-------------------~v~igyf~Q~~~~l~~~~t 402 (530)
T COG0488 345 IDRGDRIAIVGPNGAGKSTLLKLLAGELGPL---SGTVKVGE-------------------TVKIGYFDQHRDELDPDKT 402 (530)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhhhcccC---CceEEeCC-------------------ceEEEEEEehhhhcCccCc
Confidence 3578999999999999999999999988752 34554322 1247888888755557779
Q ss_pred HHHHHHHHHhhhhHHHHhccH------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 253 VMEWVAAEEKYKQEVQMKNIL------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
+.+++.-.............+ .+-+.+.+..||||| .+|.||+|||||. ||+.+...|...|
T Consensus 403 ~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL 482 (530)
T COG0488 403 VLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL 482 (530)
T ss_pred HHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH
Confidence 999987543211111111111 233466778999997 7999999999999 9999988888777
Q ss_pred HHHHhCCcEEEEecCC
Q 007851 315 SRLLSTGTVLVATSNR 330 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~ 330 (587)
..+ .|++|+++|++
T Consensus 483 ~~f--~Gtvl~VSHDr 496 (530)
T COG0488 483 LDF--EGTVLLVSHDR 496 (530)
T ss_pred HhC--CCeEEEEeCCH
Confidence 665 57777777775
No 331
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.54 E-value=1.9e-14 Score=177.12 Aligned_cols=147 Identities=16% Similarity=0.208 Sum_probs=103.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcc------------------------------------------------
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIV------------------------------------------------ 204 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~------------------------------------------------ 204 (587)
.++|+.++|+||+|||||||+++|.|...|..
T Consensus 1191 i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1270 (1466)
T PTZ00265 1191 CDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDS 1270 (1466)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 35799999999999999999999999988510
Q ss_pred ---cceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHHHHHHhhhhHHHHh-----ccHHH
Q 007851 205 ---KHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMK-----NILPA 275 (587)
Q Consensus 205 ---~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~~~~~~~~~~~~~-----~~L~~ 275 (587)
...|.|.+++. ++... ... .++.+++|+|+ +.+|+.|++|||.++.......+.. ..+.+
T Consensus 1271 ~~~~~~G~I~idG~--di~~~~~~~-------lR~~i~~V~Qe--p~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~ 1339 (1466)
T PTZ00265 1271 TVFKNSGKILLDGV--DICDYNLKD-------LRNLFSIVSQE--PMLFNMSIYENIKFGKEDATREDVKRACKFAAIDE 1339 (1466)
T ss_pred ccCCCCCeEEECCE--EHHhCCHHH-------HHhhccEeCCC--CccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHH
Confidence 02466776663 33221 112 23578999996 5778999999999974322111111 11222
Q ss_pred HHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHh-CCcEEEEecCC
Q 007851 276 VADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLS-TGTVLVATSNR 330 (587)
Q Consensus 276 la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~-~G~vvV~TSn~ 330 (587)
+...+ ...||||| .+|+||+|||+|+ ||......+.+.|..+.. +|.|+|+.+|+
T Consensus 1340 fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHR 1418 (1466)
T PTZ00265 1340 FIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHR 1418 (1466)
T ss_pred HHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEech
Confidence 22222 23699997 7999999999999 999999999999998863 56776666676
No 332
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.53 E-value=3.1e-14 Score=167.16 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=100.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+||+||||||++.++.+...| .. |.|..++. ++.. .+.. .++.+|.|+|. +.+|..
T Consensus 376 i~~G~~valVG~SGsGKST~i~LL~RfydP-~~--G~V~idG~--di~~~~~~~-------lr~~iglV~Qe--PvlF~~ 441 (1228)
T KOG0055|consen 376 IPSGQTVALVGPSGSGKSTLIQLLARFYDP-TS--GEVLIDGE--DIRNLNLKW-------LRSQIGLVSQE--PVLFAT 441 (1228)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCC-CC--ceEEEcCc--cchhcchHH-------HHhhcCeeeec--hhhhcc
Confidence 357999999999999999999999999987 34 45555542 2221 1112 23578999996 489999
Q ss_pred cHHHHHHHHHhhhhHHHHhc-----cHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEVQMKN-----ILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~-----~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|++|||.++.......+..+ ....+...+ ..+||||| ++|+||+|||+|+ ||
T Consensus 442 tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD 521 (1228)
T KOG0055|consen 442 TIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALD 521 (1228)
T ss_pred cHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccC
Confidence 99999999864322111100 011111111 13799997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
..+...+.+.|+...+..++||++|.
T Consensus 522 ~~se~~Vq~ALd~~~~grTTivVaHR 547 (1228)
T KOG0055|consen 522 AESERVVQEALDKASKGRTTIVVAHR 547 (1228)
T ss_pred HHHHHHHHHHHHHhhcCCeEEEEeee
Confidence 99999999999887654456666554
No 333
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.52 E-value=6.8e-14 Score=155.74 Aligned_cols=133 Identities=20% Similarity=0.213 Sum_probs=91.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|..++|+|+|||||||||++|+|...+ .. +.|.... .-.++++.|+ .......|
T Consensus 26 ~~~G~riGLvG~NGaGKSTLLkilaG~~~~-~~--G~i~~~~-------------------~~~v~~l~Q~-~~~~~~~t 82 (530)
T COG0488 26 LNPGERIGLVGRNGAGKSTLLKILAGELEP-DS--GEVTRPK-------------------GLRVGYLSQE-PPLDPEKT 82 (530)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHcCCCcC-CC--CeEeecC-------------------CceEEEeCCC-CCcCCCcc
Confidence 357899999999999999999999999975 23 4442211 1257888887 34455568
Q ss_pred HHHHHHHHHhhhhH-----HHH---------------------------hccHHHHH--------hHhhhhhcccC----
Q 007851 253 VMEWVAAEEKYKQE-----VQM---------------------------KNILPAVA--------DKFLVDQHADQ---- 288 (587)
Q Consensus 253 V~eni~~~~~~~~~-----~~~---------------------------~~~L~~la--------~~l~~~LSgGq---- 288 (587)
|.+.+..+...... ... +..+..+. ++.+.+||||+
T Consensus 83 v~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~r~Rv 162 (530)
T COG0488 83 VLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRV 162 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHHHHHH
Confidence 98888654221000 000 00001110 45667999997
Q ss_pred -------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 289 -------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 -------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+|+||+|||||. ||+.....|-+.|..+ .|++||+||+|
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~gtviiVSHDR 210 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PGTVIVVSHDR 210 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CCcEEEEeCCH
Confidence 7999999999999 9999999888888754 56666666665
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.51 E-value=4.9e-14 Score=131.61 Aligned_cols=103 Identities=19% Similarity=0.203 Sum_probs=75.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||||||||+++++|..++ ..+.|.+++. ..++|++| ++.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~---~~G~i~~~~~-------------------~~i~~~~~--------lS~ 73 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEP---DEGIVTWGST-------------------VKIGYFEQ--------LSG 73 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCC---CceEEEECCe-------------------EEEEEEcc--------CCH
Confidence 47899999999999999999999999985 2456766541 24577765 110
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
. ... .-.++..++ .+|++|+||||+. +|+.....+.++++++ +.+++++||..
T Consensus 74 G--------------~~~-rv~laral~-------~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~ 127 (144)
T cd03221 74 G--------------EKM-RLALAKLLL-------ENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDR 127 (144)
T ss_pred H--------------HHH-HHHHHHHHh-------cCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCH
Confidence 0 001 123455555 6899999999998 9999999999999876 35666677753
No 335
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.51 E-value=4.9e-14 Score=132.79 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=81.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|.|+||+|||||+++++|.+++ ..+++.+++. .+...... .....+++++| ++.
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~~---~~G~i~~~~~--~~~~~~~~------~~~~~i~~~~q--------lS~ 83 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLKP---TSGEILIDGK--DIAKLPLE------ELRRRIGYVPQ--------LSG 83 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CccEEEECCE--EcccCCHH------HHHhceEEEee--------CCH
Confidence 46899999999999999999999999875 3466776652 11100000 01234677766 110
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+. .. .-.++..+. .+|+++|+|||+. +|+..+..+.+++..+.+.|.++|++||..
T Consensus 84 -----------G~---~~-r~~l~~~l~-------~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~ 140 (157)
T cd00267 84 -----------GQ---RQ-RVALARALL-------LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140 (157)
T ss_pred -----------HH---HH-HHHHHHHHh-------cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 00 01 122455554 5799999999998 999999999999999877777777777763
No 336
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=4.2e-14 Score=153.45 Aligned_cols=146 Identities=14% Similarity=0.149 Sum_probs=100.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+.+.|+|++|||||||+.++.|..++ .+|.|++++- ++..--.+ ..+..++++.| ...+|..|
T Consensus 361 l~~GEkvAIlG~SGsGKSTllqLl~~~~~~---~~G~i~~~g~--~~~~l~~~------~~~e~i~vl~Q--r~hlF~~T 427 (573)
T COG4987 361 LAQGEKVAILGRSGSGKSTLLQLLAGAWDP---QQGSITLNGV--EIASLDEQ------ALRETISVLTQ--RVHLFSGT 427 (573)
T ss_pred ecCCCeEEEECCCCCCHHHHHHHHHhccCC---CCCeeeECCc--ChhhCChh------hHHHHHhhhcc--chHHHHHH
Confidence 357999999999999999999999999986 3466777762 22110000 01134566666 45678899
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhH-----------hhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADK-----------FLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~-----------l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+++|+..........+. +..+.++... -...||||+ ++.++++|||||. +|+
T Consensus 428 lr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~ 507 (573)
T COG4987 428 LRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDP 507 (573)
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCCh
Confidence 99999886543222111 1123333222 234799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+...+.+++.+..+..+++++|||..
T Consensus 508 ~TE~~vL~ll~~~~~~kTll~vTHrL~ 534 (573)
T COG4987 508 ITERQVLALLFEHAEGKTLLMVTHRLR 534 (573)
T ss_pred hhHHHHHHHHHHHhcCCeEEEEecccc
Confidence 999998888888766444566666653
No 337
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.51 E-value=5.4e-14 Score=166.02 Aligned_cols=175 Identities=19% Similarity=0.142 Sum_probs=129.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+++++++|.|+||+||||+++++.|..++ +.| .+...+ .++....+. ....+.+||.+|. ..+...+|
T Consensus 588 V~~gecfgLLG~NGAGKtT~f~mltG~~~~-t~G--~a~i~g--~~i~~~~~~-----~~~~~~iGyCPQ~-d~l~~~lT 656 (885)
T KOG0059|consen 588 VPPGECFGLLGVNGAGKTTTFKMLTGETKP-TSG--EALIKG--HDITVSTDF-----QQVRKQLGYCPQF-DALWEELT 656 (885)
T ss_pred ecCCceEEEecCCCCCchhhHHHHhCCccC-Ccc--eEEEec--Cccccccch-----hhhhhhcccCCch-hhhhhhcc
Confidence 357899999999999999999999999986 344 443333 122211111 0123568999997 67788899
Q ss_pred HHHHHHHHHhhhhHH--HH---------hccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQEV--QM---------KNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~~~--~~---------~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|++.+..+.++.. +. ...+...+++.++.+|||+ .+|+++|||||++ +||..++.
T Consensus 657 ~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~ 736 (885)
T KOG0059|consen 657 GREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRH 736 (885)
T ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHH
Confidence 999999888776521 11 1123455777788999997 7999999999998 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhh
Q 007851 310 LSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY 367 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~Dy 367 (587)
+++++.++.++|..+|.|||.+.|. +..|..+.++ ..++...+++...+
T Consensus 737 lW~ii~~~~k~g~aiiLTSHsMeE~--------EaLCtR~aIm-v~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 737 LWDIIARLRKNGKAIILTSHSMEEA--------EALCTRTAIM-VIGQLRCIGSPQEL 785 (885)
T ss_pred HHHHHHHHHhcCCEEEEEcCCHHHH--------HHHhhhhhee-ecCeeEEecChHHH
Confidence 9999999999887888899987553 4555666655 67777888776433
No 338
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.50 E-value=6.9e-14 Score=172.22 Aligned_cols=145 Identities=12% Similarity=0.193 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++|.|.++| . +|.|.+++- .++.. ....+ ++.+++|+|+ +.+++.|
T Consensus 409 ~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p-~--~G~I~i~~g-~~i~~~~~~~l-------r~~Ig~V~Q~--~~LF~~T 475 (1466)
T PTZ00265 409 TEGKTYAFVGESGCGKSTILKLIERLYDP-T--EGDIIINDS-HNLKDINLKWW-------RSKIGVVSQD--PLLFSNS 475 (1466)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhccC-C--CCeEEEeCC-cchhhCCHHHH-------HHhccEeccc--ccchhcc
Confidence 57999999999999999999999999986 2 456666320 12211 01111 2468999997 3455679
Q ss_pred HHHHHHHHHhhh---------------------------------------------------------hHHHHhc----
Q 007851 253 VMEWVAAEEKYK---------------------------------------------------------QEVQMKN---- 271 (587)
Q Consensus 253 V~eni~~~~~~~---------------------------------------------------------~~~~~~~---- 271 (587)
++|||.++.... ...+...
T Consensus 476 I~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~ 555 (1466)
T PTZ00265 476 IKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKK 555 (1466)
T ss_pred HHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHH
Confidence 999999853100 0000000
Q ss_pred -cHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHh-CCcEEEE
Q 007851 272 -ILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLS-TGTVLVA 326 (587)
Q Consensus 272 -~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~-~G~vvV~ 326 (587)
.+.++. .+...+||||| .+|+||+||||++ +|+.....+.+.|.++.+ .|.++|+
T Consensus 556 ~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIi 635 (1466)
T PTZ00265 556 VLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITII 635 (1466)
T ss_pred hCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence 011111 12235799997 7999999999999 999999999999999975 5777777
Q ss_pred ecCCC
Q 007851 327 TSNRA 331 (587)
Q Consensus 327 TSn~~ 331 (587)
++|+.
T Consensus 636 IsHrl 640 (1466)
T PTZ00265 636 IAHRL 640 (1466)
T ss_pred EeCCH
Confidence 77763
No 339
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.50 E-value=1.5e-13 Score=144.69 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=111.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
..|+.++|+|.+|||||||-.++..++++ +++|.|.+ .++...- ++.....++.+.+|||++. .+.|.+|
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s----~G~I~F~G--~~i~~~~---~~~mrplR~~mQvVFQDPygSLsPRmt 381 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPS----QGEIRFDG--QDIDGLS---RKEMRPLRRRMQVVFQDPYGSLSPRMT 381 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCc----CceEEECC--ccccccC---hhhhhhhhhhceEEEeCCCCCCCcccC
Confidence 57899999999999999999999999974 36788876 3332110 1112233467889999975 5778899
Q ss_pred HHHHHHHHHhhhhH----HH----HhccH------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 253 VMEWVAAEEKYKQE----VQ----MKNIL------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 253 V~eni~~~~~~~~~----~~----~~~~L------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
|.+-|..++..+.. .+ ..+.+ ....++++.+.|||| .+|++++|||||+ ||..-
T Consensus 382 V~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SV 461 (534)
T COG4172 382 VGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSV 461 (534)
T ss_pred HHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHH
Confidence 99999988765431 11 11122 235788899999998 6999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
+..+.+||+.|.++ |..-++.||.
T Consensus 462 QaQvv~LLr~LQ~k~~LsYLFISHD 486 (534)
T COG4172 462 QAQVLDLLRDLQQKHGLSYLFISHD 486 (534)
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecc
Confidence 99999999999875 7765555664
No 340
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=1.9e-13 Score=136.37 Aligned_cols=133 Identities=14% Similarity=0.125 Sum_probs=97.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.++|+|+||||||||+++|+|.++| +.|+..+ ++-...+ + .+ + ..+.+++|.
T Consensus 51 ~~Ge~vGiiG~NGaGKSTLlkliaGi~~P-t~G~v~v--~G~v~~l---i-~l-----------g------~Gf~pelTG 106 (249)
T COG1134 51 YKGERVGIIGHNGAGKSTLLKLIAGIYKP-TSGKVKV--TGKVAPL---I-EL-----------G------AGFDPELTG 106 (249)
T ss_pred eCCCEEEEECCCCCcHHHHHHHHhCccCC-CCceEEE--cceEehh---h-hc-----------c------cCCCcccch
Confidence 46899999999999999999999999997 3554444 3311111 0 11 1 235578999
Q ss_pred HHHHHHHHhhhhH--HH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQE--VQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+||+.+...+.+. .+ .+ ..|.+..+..+.++|.|+ .+|+||++||..+ -|..=...=
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~ 186 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC 186 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence 9999887665531 11 11 134567788888999996 7999999999987 898888888
Q ss_pred HHHHHHHHhCCcEEEEecCC
Q 007851 311 SGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+.+.++.+++.+||+.||.
T Consensus 187 ~~rl~e~~~~~~tiv~VSHd 206 (249)
T COG1134 187 LERLNELVEKNKTIVLVSHD 206 (249)
T ss_pred HHHHHHHHHcCCEEEEEECC
Confidence 88888887777877777775
No 341
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.49 E-value=5.3e-14 Score=158.22 Aligned_cols=139 Identities=17% Similarity=0.146 Sum_probs=91.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|..+| .+|.|.+++. ++.. .... .++.+++++|+ +.+++.|
T Consensus 347 ~~G~~~aivG~sGsGKSTL~~ll~g~~~~---~~G~i~~~g~--~~~~~~~~~-------~~~~i~~v~q~--~~lf~~t 412 (547)
T PRK10522 347 KRGELLFLIGGNGSGKSTLAMLLTGLYQP---QSGEILLDGK--PVTAEQPED-------YRKLFSAVFTD--FHLFDQL 412 (547)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCE--ECCCCCHHH-------HhhheEEEecC--hhHHHHh
Confidence 57899999999999999999999999986 2456666652 2211 0011 13468999996 3566677
Q ss_pred HHHHHHHHHhhhhHHHHhc-----cHHHHHh---Hh--hhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 253 VMEWVAAEEKYKQEVQMKN-----ILPAVAD---KF--LVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~-----~L~~la~---~l--~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
+.+|-. . .......+ .+..... .. ..+||||| .+|++|+||||++ +|+.....+
T Consensus 413 i~~n~~---~-~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i 488 (547)
T PRK10522 413 LGPEGK---P-ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREF 488 (547)
T ss_pred hccccC---c-hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH
Confidence 777610 0 00000000 1111111 10 24799997 7999999999999 999999988
Q ss_pred HHHHHHHHh-CCcEEEEecCC
Q 007851 311 SGIVSRLLS-TGTVLVATSNR 330 (587)
Q Consensus 311 ~~Ll~~L~~-~G~vvV~TSn~ 330 (587)
.+.+..+.+ .|.++|++||+
T Consensus 489 ~~~l~~~~~~~~~tvi~itH~ 509 (547)
T PRK10522 489 YQVLLPLLQEMGKTIFAISHD 509 (547)
T ss_pred HHHHHHHHHhCCCEEEEEEec
Confidence 888776554 46666666665
No 342
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.49 E-value=4.5e-13 Score=129.62 Aligned_cols=149 Identities=17% Similarity=0.168 Sum_probs=101.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhH----HHHHHHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM----LKINEHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm----~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.++|+...|+||||+|||||+.+++.+++. .+|...+...+.. .++.+.+.-++ |. ....
T Consensus 24 i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~-d~G~i~i~g~~~~~~~s~~LAk~lSILk--------------Q~-N~i~ 87 (252)
T COG4604 24 IPKGGITSIIGPNGAGKSTLLSMMSRLLKK-DSGEITIDGLELTSTPSKELAKKLSILK--------------QE-NHIN 87 (252)
T ss_pred ecCCceeEEECCCCccHHHHHHHHHHhccc-cCceEEEeeeecccCChHHHHHHHHHHH--------------hh-chhh
Confidence 457899999999999999999999999985 3444444332211 12222222222 22 3344
Q ss_pred CCCcHHHHHHHHHh-h-hhH--HH----Hh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 249 FDSKVMEWVAAEEK-Y-KQE--VQ----MK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 249 ~~~tV~eni~~~~~-~-~~~--~~----~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
..+||++.+.|+.- + .++ .+ .. ..|..+.+++..+||||| ++.+.++||||.. ||
T Consensus 88 ~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLD 167 (252)
T COG4604 88 SRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLD 167 (252)
T ss_pred heeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccc
Confidence 56899999998742 1 111 11 11 124678899999999997 7999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhC-CcE-EEEecCCCcccccc
Q 007851 304 VFAIVALSGIVSRLLST-GTV-LVATSNRAPWDLNQ 337 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~-G~v-vV~TSn~~PedLy~ 337 (587)
...+..++.+++++.++ |.+ ||+-|+......|.
T Consensus 168 mkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Ys 203 (252)
T COG4604 168 MKHSVQIMKILRRLADELGKTIVVVLHDINFASCYS 203 (252)
T ss_pred hHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhh
Confidence 99999999999999875 665 45555544344443
No 343
>PLN03232 ABC transporter C family member; Provisional
Probab=99.49 E-value=7.4e-14 Score=172.83 Aligned_cols=142 Identities=16% Similarity=0.240 Sum_probs=99.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+|++|||||||++++.+..+| . +|+|.+++. ++.+ ..+.+ ++.+++|+|+ +.+++.|
T Consensus 1260 ~~GekvaIVG~SGSGKSTL~~lL~rl~~p-~--~G~I~IdG~--di~~i~~~~l-------R~~i~iVpQd--p~LF~gT 1325 (1495)
T PLN03232 1260 SPSEKVGVVGRTGAGKSSMLNALFRIVEL-E--KGRIMIDDC--DVAKFGLTDL-------RRVLSIIPQS--PVLFSGT 1325 (1495)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC-C--CceEEECCE--EhhhCCHHHH-------HhhcEEECCC--CeeeCcc
Confidence 57999999999999999999999999986 2 456666652 3321 11222 3568999997 4677889
Q ss_pred HHHHHHHHHhhhhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+++|+...... ...+.. ..+.++...+ ..+||||| ++|+||+|||+|+ +|.
T Consensus 1326 Ir~NL~~~~~~-sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~ 1404 (1495)
T PLN03232 1326 VRFNIDPFSEH-NDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDV 1404 (1495)
T ss_pred HHHHcCCCCCC-CHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 99999764321 111111 1122222222 23799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+++.++ +.|+|+.+||.
T Consensus 1405 ~Te~~Iq~~L~~~~~-~~TvI~IAHRl 1430 (1495)
T PLN03232 1405 RTDSLIQRTIREEFK-SCTMLVIAHRL 1430 (1495)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEeCCH
Confidence 999999999998865 45666666664
No 344
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=142.50 Aligned_cols=150 Identities=17% Similarity=0.159 Sum_probs=109.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCc--ccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCC-
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI--VKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWIT- 245 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~--~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~- 245 (587)
..+|+.++|+|.+|||||..+..+.++++.+ ...+++|+|++- ++- ..+..++ ...|+++||.+.
T Consensus 33 i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~--dll~~se~~lr~iR------G~~I~MIFQEPMt 104 (534)
T COG4172 33 IEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGE--DLLAASERQLRGVR------GNKIGMIFQEPMT 104 (534)
T ss_pred ecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcCh--hhhcCCHHHHhhhc------ccceEEEeccccc
Confidence 3579999999999999999999999998742 234578999873 321 2233332 467999999874
Q ss_pred CCCCCCcHHHHHHHHHhhhhH---HH----HhccH--------HHHHhHhhhhhcccC-----------CCccEEEEeCC
Q 007851 246 NLPFDSKVMEWVAAEEKYKQE---VQ----MKNIL--------PAVADKFLVDQHADQ-----------RGASILCFDEI 299 (587)
Q Consensus 246 ~~~~~~tV~eni~~~~~~~~~---~~----~~~~L--------~~la~~l~~~LSgGq-----------~~p~LL~LDEP 299 (587)
.+.|-.|+..-+....+.+.. .. ....+ ..-.+.++++||||| .+|++|+.|||
T Consensus 105 SLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEP 184 (534)
T COG4172 105 SLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEP 184 (534)
T ss_pred ccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCC
Confidence 455556777777665543321 10 11111 234678899999997 79999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhC-Cc-EEEEecCC
Q 007851 300 QT-VDVFAIVALSGIVSRLLST-GT-VLVATSNR 330 (587)
Q Consensus 300 t~-lD~~~a~~L~~Ll~~L~~~-G~-vvV~TSn~ 330 (587)
|. ||+.-+..|.+||+.|.++ |. ++++||+.
T Consensus 185 TTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL 218 (534)
T COG4172 185 TTALDVTVQAQILDLLKELQAELGMAILFITHDL 218 (534)
T ss_pred cchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH
Confidence 98 9999999999999999876 87 45566553
No 345
>PLN03073 ABC transporter F family; Provisional
Probab=99.47 E-value=1.5e-13 Score=158.60 Aligned_cols=129 Identities=16% Similarity=0.131 Sum_probs=86.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .. |.|.++. ...++|++|+. ...+++
T Consensus 533 ~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p-~~--G~I~~~~-------------------~~~igyv~Q~~---~~~l~~ 587 (718)
T PLN03073 533 DLDSRIAMVGPNGIGKSTILKLISGELQP-SS--GTVFRSA-------------------KVRMAVFSQHH---VDGLDL 587 (718)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC-CC--ceEEECC-------------------ceeEEEEeccc---cccCCc
Confidence 57899999999999999999999999986 33 4555432 12478998863 223444
Q ss_pred HHHHHHHH-h-hhh--HHHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 254 MEWVAAEE-K-YKQ--EVQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 254 ~eni~~~~-~-~~~--~~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
.++..... . ... ...... .+. ..+++.+.+||||| .+|+||+|||||+ +|+.....+.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~ 667 (718)
T PLN03073 588 SSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI 667 (718)
T ss_pred chhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH
Confidence 44433211 1 101 111111 122 34566788999997 7999999999999 9999988887
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 007851 312 GIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 312 ~Ll~~L~~~G~vvV~TSn~ 330 (587)
+.+..+ .| +||++||.
T Consensus 668 ~~L~~~--~g-tvIivSHd 683 (718)
T PLN03073 668 QGLVLF--QG-GVLMVSHD 683 (718)
T ss_pred HHHHHc--CC-EEEEEECC
Confidence 777654 45 55555554
No 346
>PLN03130 ABC transporter C family member; Provisional
Probab=99.47 E-value=1.1e-13 Score=171.80 Aligned_cols=143 Identities=17% Similarity=0.218 Sum_probs=100.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+|++|||||||+++|.+.+++ . +|+|.+++. ++.. .++.+ ++.+++|+|+ +.+|+.
T Consensus 1262 I~~GekVaIVGrSGSGKSTLl~lL~rl~~p-~--~G~I~IDG~--dI~~i~l~~L-------R~~IsiVpQd--p~LF~G 1327 (1622)
T PLN03130 1262 ISPSEKVGIVGRTGAGKSSMLNALFRIVEL-E--RGRILIDGC--DISKFGLMDL-------RKVLGIIPQA--PVLFSG 1327 (1622)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCcCCC-C--CceEEECCE--ecccCCHHHH-------HhccEEECCC--Cccccc
Confidence 367999999999999999999999999986 2 456666652 3321 11222 3578999997 567788
Q ss_pred cHHHHHHHHHhhhhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+++||...... ...+.. ..+.+....+ ..+||||| ++|+||+|||+|+ +|
T Consensus 1328 TIreNLd~~~~~-tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD 1406 (1622)
T PLN03130 1328 TVRFNLDPFNEH-NDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVD 1406 (1622)
T ss_pred cHHHHhCcCCCC-CHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCC
Confidence 999999764321 111111 1112222222 23799997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
......+.+.++++++ +.|+|+.+||.
T Consensus 1407 ~~Te~~Iq~~I~~~~~-~~TvI~IAHRL 1433 (1622)
T PLN03130 1407 VRTDALIQKTIREEFK-SCTMLIIAHRL 1433 (1622)
T ss_pred HHHHHHHHHHHHHHCC-CCEEEEEeCCh
Confidence 9999999999998865 56666666664
No 347
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.47 E-value=8.6e-14 Score=156.81 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=92.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|..+| . +|.|.+++. ++.. .... .++.+++++|+ ..+++.|
T Consensus 366 ~~G~~~aivG~sGsGKSTl~~ll~g~~~p-~--~G~i~~~g~--~i~~~~~~~-------~~~~i~~v~q~--~~lf~~t 431 (555)
T TIGR01194 366 AQGDIVFIVGENGCGKSTLAKLFCGLYIP-Q--EGEILLDGA--AVSADSRDD-------YRDLFSAIFAD--FHLFDDL 431 (555)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--ECCCCCHHH-------HHhhCcEEccC--hhhhhhh
Confidence 57899999999999999999999999986 2 455655542 2211 0011 12467899986 4566778
Q ss_pred HHHHHHHHHhhhhHHHHhc-----cHHHHHhHh------hhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYKQEVQMKN-----ILPAVADKF------LVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~-----~L~~la~~l------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
+.+|.... ....+... .+....+.+ ...||||| .+|+||+||||++ +|+.....
T Consensus 432 i~~n~~~~---~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~ 508 (555)
T TIGR01194 432 IGPDEGEH---ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRF 508 (555)
T ss_pred hhcccccc---hhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 88875210 00111111 111111111 14699997 7999999999999 99999988
Q ss_pred HHH-HHHHHHhCCcEEEEecCCC
Q 007851 310 LSG-IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~-Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.+ +++.+...|.++|++||+.
T Consensus 509 i~~~l~~~~~~~~~tiiiisH~~ 531 (555)
T TIGR01194 509 FYEELLPDLKRQGKTIIIISHDD 531 (555)
T ss_pred HHHHHHHHHHhCCCEEEEEeccH
Confidence 876 4555655677776667753
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.47 E-value=1.2e-13 Score=133.57 Aligned_cols=116 Identities=16% Similarity=0.192 Sum_probs=76.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.+.|+||||||||||++++.+ ..+..++ .+. .. ... +..+++++|
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il~-----~~G~v~~--~~~---~~----~~~------~~~~~~~~q----------- 67 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGLY-----ASGKARL--ISF---LP----KFS------RNKLIFIDQ----------- 67 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhh-----cCCcEEE--CCc---cc----ccc------cccEEEEhH-----------
Confidence 5789999999999999999999853 1233333 221 00 000 112444443
Q ss_pred HHHHHHHHhhhhHHHHhccHHH-HHhHhhhhhcccC-----------CC--ccEEEEeCCCC-CCHHHHHHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQEVQMKNILPA-VADKFLVDQHADQ-----------RG--ASILCFDEIQT-VDVFAIVALSGIVSRLL 318 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~-la~~l~~~LSgGq-----------~~--p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~ 318 (587)
.+.+. ...+.. ..++.+.+||+|+ .+ |++|+||||+. +|+..+..+.+++.++.
T Consensus 68 ~~~l~-----------~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~ 136 (176)
T cd03238 68 LQFLI-----------DVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLI 136 (176)
T ss_pred HHHHH-----------HcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 11110 011111 1344556677775 68 99999999999 99999999999999998
Q ss_pred hCCcEEEEecCCC
Q 007851 319 STGTVLVATSNRA 331 (587)
Q Consensus 319 ~~G~vvV~TSn~~ 331 (587)
+.|.+||++||..
T Consensus 137 ~~g~tvIivSH~~ 149 (176)
T cd03238 137 DLGNTVILIEHNL 149 (176)
T ss_pred hCCCEEEEEeCCH
Confidence 7788777777764
No 349
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=154.28 Aligned_cols=131 Identities=15% Similarity=0.233 Sum_probs=81.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|.++| . .|.|.+++- ..++++.|.... ...++
T Consensus 25 ~~Ge~v~LvG~NGsGKSTLLkiL~G~~~p-d--~G~I~~~~~-------------------~~i~~~~q~~~~--~~~~~ 80 (638)
T PRK10636 25 NPGQKVGLVGKNGCGKSTLLALLKNEISA-D--GGSYTFPGN-------------------WQLAWVNQETPA--LPQPA 80 (638)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CceEEecCC-------------------CEEEEEecCCCC--CCCCH
Confidence 47899999999999999999999998875 2 355555431 123455443111 12333
Q ss_pred HHHHHHHH-----------------------hhhh----------HHHHhcc-----HH-HHHhHhhhhhcccC------
Q 007851 254 MEWVAAEE-----------------------KYKQ----------EVQMKNI-----LP-AVADKFLVDQHADQ------ 288 (587)
Q Consensus 254 ~eni~~~~-----------------------~~~~----------~~~~~~~-----L~-~la~~l~~~LSgGq------ 288 (587)
.+++.... .... ....... +. ...++.+.+||||+
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 33322100 0000 0001111 11 23466678999997
Q ss_pred -----CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 289 -----RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 -----~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+|+||+|||||+ ||+.....|.++|..+ .|++|++||++
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~ 206 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDR 206 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCH
Confidence 7999999999999 9999999988888765 34455555553
No 350
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.47 E-value=1.9e-13 Score=160.64 Aligned_cols=147 Identities=20% Similarity=0.208 Sum_probs=109.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC-CcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE-GIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~-~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.||.-.+|+|++|+|||||||+|+|-.. +.+. |.|.++++..+- + . -++..||+-|+ +.-.+..|
T Consensus 815 kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~--Gdi~i~G~p~~q-~---t-------F~R~~GYvqQ~-DiH~~~~T 880 (1391)
T KOG0065|consen 815 KPGVLTALMGESGAGKTTLLDVLAGRKTGGYIE--GDILISGFPKDQ-E---T-------FARVSGYVEQQ-DIHSPELT 880 (1391)
T ss_pred cCCceeehhcCCCCchHHHHHHHhcCcccceEE--eEEEECCeeCch-h---h-------hccccceeecc-cccCcccc
Confidence 5788999999999999999999999743 3333 445555543220 0 1 12457999886 44558899
Q ss_pred HHHHHHHHHhhhh-----HHH----Hh-----ccHHHHHhHhhhh----hcccC-----------CCc-cEEEEeCCCC-
Q 007851 253 VMEWVAAEEKYKQ-----EVQ----MK-----NILPAVADKFLVD----QHADQ-----------RGA-SILCFDEIQT- 301 (587)
Q Consensus 253 V~eni~~~~~~~~-----~~~----~~-----~~L~~la~~l~~~----LSgGq-----------~~p-~LL~LDEPt~- 301 (587)
|+|-+.+.+..+. ..+ ++ -.++.+++.+++. ||..| .+| .||+|||||+
T Consensus 881 VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSG 960 (1391)
T KOG0065|consen 881 VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSG 960 (1391)
T ss_pred hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCC
Confidence 9999999766542 111 11 1245678888775 77765 689 8999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccc
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
||...|.++.++++.+.+.|.+||.|-|.|-.+
T Consensus 961 LDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ 993 (1391)
T KOG0065|consen 961 LDSQAAAIVMRFLRKLADTGQTILCTIHQPSID 993 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHH
Confidence 999999999999999999999999999987544
No 351
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=6.9e-13 Score=131.13 Aligned_cols=148 Identities=14% Similarity=0.106 Sum_probs=102.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+...|+||||||||||..+|.|.-.-. ..+++|.|++ .++...-.. .+.+..+.+.||. +.-++..+
T Consensus 27 v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~G--edI~~l~~~-----ERAr~GifLafQ~-P~ei~GV~ 97 (251)
T COG0396 27 VKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDG--EDILELSPD-----ERARAGIFLAFQY-PVEIPGVT 97 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECC--cccccCCHh-----HHHhcCCEEeecC-CccCCCee
Confidence 3578999999999999999999999975422 2467888887 344221111 1123456777886 45566778
Q ss_pred HHHHHHHHHhhhhH-----HHHhccH----------HHHHhHhhh-hhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQE-----VQMKNIL----------PAVADKFLV-DQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~-----~~~~~~L----------~~la~~l~~-~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+.+.+......... .+....+ ..++++.+. .+|||+ .+|++.+||||.+ +|+
T Consensus 98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDI 177 (251)
T COG0396 98 NSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDI 177 (251)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccH
Confidence 88888765433111 0100111 124444443 699996 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCc-EEEEecC
Q 007851 305 FAIVALSGIVSRLLSTGT-VLVATSN 329 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~-vvV~TSn 329 (587)
..-.++.+.++.+.+.|. ++|+||+
T Consensus 178 dalk~V~~~i~~lr~~~~~~liITHy 203 (251)
T COG0396 178 DALKIVAEGINALREEGRGVLIITHY 203 (251)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecH
Confidence 999999999999999887 5666666
No 352
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.44 E-value=2.3e-13 Score=168.82 Aligned_cols=143 Identities=15% Similarity=0.191 Sum_probs=98.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+|++|||||||+++|.+.+++ .. |+|.+++. ++.. .++.+ ++.+++|+|+ +.+|+.
T Consensus 1309 I~~GekiaIVGrTGsGKSTL~~lL~rl~~~-~~--G~I~IdG~--dI~~i~~~~L-------R~~i~iVpQd--p~LF~g 1374 (1522)
T TIGR00957 1309 IHGGEKVGIVGRTGAGKSSLTLGLFRINES-AE--GEIIIDGL--NIAKIGLHDL-------RFKITIIPQD--PVLFSG 1374 (1522)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCccC-CC--CeEEECCE--EccccCHHHH-------HhcCeEECCC--CcccCc
Confidence 357999999999999999999999999986 23 55666652 3321 11222 3568999997 567788
Q ss_pred cHHHHHHHHHhhhhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+++|+...... ...+.. ..+.+....+ ..+||||| ++|+||+|||+|+ +|
T Consensus 1375 TIr~NLdp~~~~-sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD 1453 (1522)
T TIGR00957 1375 SLRMNLDPFSQY-SDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVD 1453 (1522)
T ss_pred cHHHHcCcccCC-CHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 999999732111 111110 1112222222 23699997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+...+.+.++..++ +.|+|+.+||.
T Consensus 1454 ~~Te~~Iq~~l~~~~~-~~TvI~IAHRl 1480 (1522)
T TIGR00957 1454 LETDNLIQSTIRTQFE-DCTVLTIAHRL 1480 (1522)
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 9999999999988765 45665566653
No 353
>PTZ00243 ABC transporter; Provisional
Probab=99.44 E-value=2.6e-13 Score=168.23 Aligned_cols=143 Identities=17% Similarity=0.149 Sum_probs=98.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+|++|||||||+++|.+.+++ . +|+|.+++. ++.. .++.+ ++.+++|+|+ +.+|+.
T Consensus 1333 I~~GekVaIVGrTGSGKSTLl~lLlrl~~p-~--~G~I~IDG~--di~~i~l~~L-------R~~I~iVpQd--p~LF~g 1398 (1560)
T PTZ00243 1333 IAPREKVGIVGRTGSGKSTLLLTFMRMVEV-C--GGEIRVNGR--EIGAYGLREL-------RRQFSMIPQD--PVLFDG 1398 (1560)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCC-C--CcEEEECCE--EcccCCHHHH-------HhcceEECCC--Cccccc
Confidence 357999999999999999999999999986 2 456666652 3321 11222 3578999997 567788
Q ss_pred cHHHHHHHHHhhhhHHHHhc-----cHHHHHhH-----------hhhhhcccC-----------CC-ccEEEEeCCCC-C
Q 007851 252 KVMEWVAAEEKYKQEVQMKN-----ILPAVADK-----------FLVDQHADQ-----------RG-ASILCFDEIQT-V 302 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~-----~L~~la~~-----------l~~~LSgGq-----------~~-p~LL~LDEPt~-l 302 (587)
|+++||....... ..+... .+.+.... -..+||||| ++ |+||||||+|+ +
T Consensus 1399 TIreNIdp~~~~s-deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1399 TVRQNVDPFLEAS-SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred cHHHHhCcccCCC-HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 9999996532111 111111 11121111 124799997 54 89999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|......+.+.|...++ +.|+|+.+|+.
T Consensus 1478 D~~te~~Iq~~L~~~~~-~~TvI~IAHRl 1505 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAFS-AYTVITIAHRL 1505 (1560)
T ss_pred CHHHHHHHHHHHHHHCC-CCEEEEEeccH
Confidence 99999999999998765 45666666653
No 354
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=7.7e-13 Score=125.29 Aligned_cols=150 Identities=14% Similarity=0.136 Sum_probs=103.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH----HHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE----HMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~----~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
...|+++.|.||+|+||||||+++|+...+ ..|++.|.-.+-..++.. .+-.. +++.+|||.|. -...
T Consensus 34 V~aGECvvL~G~SG~GKStllr~LYaNY~~-d~G~I~v~H~g~~vdl~~a~pr~vl~v------Rr~TiGyVSQF-LRvi 105 (235)
T COG4778 34 VNAGECVVLHGPSGSGKSTLLRSLYANYLP-DEGQILVRHEGEWVDLVTAEPREVLEV------RRTTIGYVSQF-LRVI 105 (235)
T ss_pred ecCccEEEeeCCCCCcHHHHHHHHHhccCC-CCceEEEEeCcchhhhhccChHHHHHH------HHhhhHHHHHH-HHhc
Confidence 357999999999999999999999999886 466666643332222211 11122 23578999885 3345
Q ss_pred CCCcHHHHHHHHHhhhhHH------HHhccH------HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 249 FDSKVMEWVAAEEKYKQEV------QMKNIL------PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~------~~~~~L------~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|..+..+.++.++...+.. ...+.+ ..+..-.+...|||+ .+..||+|||||+ +|.
T Consensus 106 PRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa 185 (235)
T COG4778 106 PRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185 (235)
T ss_pred cCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccc
Confidence 5666677777665443311 011111 223334456899996 5789999999998 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.....+.+|+.+-.++|..+|-.=|.
T Consensus 186 ~Nr~vVveli~e~Ka~GaAlvGIFHD 211 (235)
T COG4778 186 TNRAVVVELIREAKARGAALVGIFHD 211 (235)
T ss_pred cchHHHHHHHHHHHhcCceEEEeecc
Confidence 99999999999999999977765553
No 355
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.44 E-value=2.1e-13 Score=136.07 Aligned_cols=148 Identities=14% Similarity=0.116 Sum_probs=97.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~ 251 (587)
..+++...|+||||||||||+++++|..+|. .+...+..+.|..-- .... .++.||+|..... .+....
T Consensus 54 V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ps-sg~~~~~G~~~G~~~--~~~e-------lrk~IG~vS~~L~~~~~~~~ 123 (257)
T COG1119 54 VNPGEHWAIVGPNGAGKTTLLSLLTGEHPPS-SGDVTLLGRRFGKGE--TIFE-------LRKRIGLVSSELHERFRVRE 123 (257)
T ss_pred ecCCCcEEEECCCCCCHHHHHHHHhcccCCC-CCceeeeeeeccCCc--chHH-------HHHHhCccCHHHHhhccccc
Confidence 3578999999999999999999999999863 555555444432110 0012 2345666643321 233345
Q ss_pred cHHHHHHHHHh-----hh-h--HHH--------HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEK-----YK-Q--EVQ--------MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~-----~~-~--~~~--------~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
+|+|-|.-+.- +. . ... ....+..++++...+||-|+ .+|.+|+||||+. +|
T Consensus 124 ~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLD 203 (257)
T COG1119 124 TVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLD 203 (257)
T ss_pred ccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCC
Confidence 56665542210 00 0 000 11234567888889999997 7999999999998 99
Q ss_pred HHHHHHHHHHHHHHHhC--CcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLST--GTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~--G~vvV~TSn~ 330 (587)
....+.+.+.|..+... +.++|+.||.
T Consensus 204 l~~re~ll~~l~~~~~~~~~~~ll~VtHh 232 (257)
T COG1119 204 LIAREQLLNRLEELAASPGAPALLFVTHH 232 (257)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 99999999999999875 5555544454
No 356
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.42 E-value=1.1e-12 Score=162.39 Aligned_cols=131 Identities=16% Similarity=0.148 Sum_probs=92.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++|+|.+++ .. |.|.+++ .++|++|++ .+++.|+
T Consensus 450 ~~G~~~~I~G~~GsGKSTLl~~l~G~~~~-~~--G~i~~~g---------------------~iayv~Q~~--~l~~~Ti 503 (1490)
T TIGR01271 450 EKGQLLAVAGSTGSGKSSLLMMIMGELEP-SE--GKIKHSG---------------------RISFSPQTS--WIMPGTI 503 (1490)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--ceEEECC---------------------EEEEEeCCC--ccCCccH
Confidence 57899999999999999999999999986 33 4554433 368999863 4456799
Q ss_pred HHHHHHHHhhhhH--HHH--hccHHHH-----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQM--KNILPAV-----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~~--~~~L~~l-----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+|||.++..+... ... ...+... ..+...+||||| .+|+||+||||++ +|...
T Consensus 504 ~eNI~~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~ 583 (1490)
T TIGR01271 504 KDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583 (1490)
T ss_pred HHHHHhccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 9999986432210 000 0011111 112245899997 7999999999999 99999
Q ss_pred HHHHHH-HHHHHHhCCcEEEEecCCC
Q 007851 307 IVALSG-IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~-Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+.+ ++..+.+ |.++|++||..
T Consensus 584 ~~~i~~~~l~~~~~-~~tvilvtH~~ 608 (1490)
T TIGR01271 584 EKEIFESCLCKLMS-NKTRILVTSKL 608 (1490)
T ss_pred HHHHHHHHHHHHhc-CCeEEEEeCCh
Confidence 999987 4666654 66665555653
No 357
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.42 E-value=5.6e-13 Score=164.97 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=98.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+|++|||||||+++|+|..+ . +|+|.+++. ++.. .++.+ ++.+++++|+ +.+|+.
T Consensus 1242 I~~GekvaIvGrSGsGKSTLl~lL~rl~~--~--~G~I~IdG~--di~~i~~~~l-------R~~is~IpQd--p~LF~G 1306 (1490)
T TIGR01271 1242 VEGGQRVGLLGRTGSGKSTLLSALLRLLS--T--EGEIQIDGV--SWNSVTLQTW-------RKAFGVIPQK--VFIFSG 1306 (1490)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhhcC--C--CcEEEECCE--EcccCCHHHH-------HhceEEEeCC--CccCcc
Confidence 35799999999999999999999999985 2 356666652 3321 11222 3578999996 567788
Q ss_pred cHHHHHHHHHhhhhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+++||....... ..+.. ..+.+....+ ..+||||| ++|+||||||||+ +|
T Consensus 1307 TIR~NLdp~~~~t-deei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1307 TFRKNLDPYEQWS-DEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred CHHHHhCcccCCC-HHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 9999996432111 11100 1111121222 23699997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
......|.+.|+..++ +.|||+.+||.
T Consensus 1386 ~~Te~~I~~~L~~~~~-~~TvI~IaHRl 1412 (1490)
T TIGR01271 1386 PVTLQIIRKTLKQSFS-NCTVILSEHRV 1412 (1490)
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 9999999999998865 46666666663
No 358
>PLN03130 ABC transporter C family member; Provisional
Probab=99.41 E-value=9.4e-13 Score=163.69 Aligned_cols=131 Identities=17% Similarity=0.212 Sum_probs=90.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||+|||||||+++|.|.+++ .. +|.|.. +..++|++|+ +.+++.|+
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~-GG~I~l---------------------~~~Iayv~Q~--p~LfngTI 695 (1622)
T PLN03130 641 PVGSLVAIVGSTGEGKTSLISAMLGELPP-RS-DASVVI---------------------RGTVAYVPQV--SWIFNATV 695 (1622)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhhcc-CC-CceEEE---------------------cCeEEEEcCc--cccCCCCH
Confidence 57899999999999999999999999986 23 145532 1357899986 57788999
Q ss_pred HHHHHHHHhhhhHH--H--HhccHHHHHh-----------HhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQEV--Q--MKNILPAVAD-----------KFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~~--~--~~~~L~~la~-----------~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+|||.++..+.... + ....+.+... +...+||||| .+|+||+||||++ +|...
T Consensus 696 reNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~ 775 (1622)
T PLN03130 696 RDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHV 775 (1622)
T ss_pred HHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHH
Confidence 99999875432110 0 0011111111 2234799997 7999999999999 99988
Q ss_pred HHHH-HHHHHHHHhCCcEEEEecCC
Q 007851 307 IVAL-SGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L-~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+ .+++..+. +|.|+|+.||+
T Consensus 776 ~~~I~~~~l~~~l-~~kTvIlVTH~ 799 (1622)
T PLN03130 776 GRQVFDKCIKDEL-RGKTRVLVTNQ 799 (1622)
T ss_pred HHHHHHHHhhHHh-cCCEEEEEECC
Confidence 7655 56676654 45554444444
No 359
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.41 E-value=9e-13 Score=150.87 Aligned_cols=51 Identities=22% Similarity=0.382 Sum_probs=41.5
Q ss_pred hHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 278 DKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 278 ~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
++.+.+||||+ .+|+||+||||++ +|+.....|.++|..+ .+++|++||++
T Consensus 151 ~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~ 213 (635)
T PRK11147 151 DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDR 213 (635)
T ss_pred CCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCH
Confidence 45567999997 7999999999999 9999999999999887 35455555553
No 360
>PLN03232 ABC transporter C family member; Provisional
Probab=99.40 E-value=1e-12 Score=162.75 Aligned_cols=131 Identities=18% Similarity=0.241 Sum_probs=88.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||+|||||||+++|.|.+++ ..|+. +. .+..++|++|+ +.+++.|+
T Consensus 641 ~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~-~~G~i-~~---------------------~~~~Iayv~Q~--p~Lf~gTI 695 (1495)
T PLN03232 641 PVGSLVAIVGGTGEGKTSLISAMLGELSH-AETSS-VV---------------------IRGSVAYVPQV--SWIFNATV 695 (1495)
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCcc-cCCCE-EE---------------------ecCcEEEEcCc--cccccccH
Confidence 57899999999999999999999999986 23322 11 12367999986 56778999
Q ss_pred HHHHHHHHhhhhHH--HH--hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQEV--QM--KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~~--~~--~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+|||.++..+.... +. ...+.+..+.+ ..+||||| .+|+||+||||++ +|...
T Consensus 696 reNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t 775 (1495)
T PLN03232 696 RENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHV 775 (1495)
T ss_pred HHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 99999875322110 00 00111111222 23799997 7999999999999 99988
Q ss_pred HHHH-HHHHHHHHhCCcEEEEecCC
Q 007851 307 IVAL-SGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L-~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+ .+++..+. +|.|+|+.||+
T Consensus 776 ~~~I~~~~l~~~l-~~kT~IlvTH~ 799 (1495)
T PLN03232 776 AHQVFDSCMKDEL-KGKTRVLVTNQ 799 (1495)
T ss_pred HHHHHHHHhhhhh-cCCEEEEEECC
Confidence 7755 45666554 44544444444
No 361
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.40 E-value=7.5e-13 Score=155.67 Aligned_cols=142 Identities=18% Similarity=0.215 Sum_probs=100.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||+||||||++.+|-....| ..|+..| ++ .++.. .+..+ ++.++.|.|. +.+|+.|
T Consensus 1014 ~~GqTvALVG~SGsGKSTvI~LLeRfYdp-~~G~V~I--Dg--~dik~lnl~~L-------R~~i~lVsQE--P~LF~~T 1079 (1228)
T KOG0055|consen 1014 RAGQTVALVGPSGSGKSTVISLLERFYDP-DAGKVKI--DG--VDIKDLNLKWL-------RKQIGLVSQE--PVLFNGT 1079 (1228)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHhcCC-CCCeEEE--CC--cccccCCHHHH-------HHhcceeccC--chhhccc
Confidence 57999999999999999999999998886 3555444 43 23322 12223 3568888885 6889999
Q ss_pred HHHHHHHHHhhhhHHHHhccH-----HHH-----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMKNIL-----PAV-----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L-----~~l-----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++|||.++.......+..+.. ..+ ..+...+||||| ++|+||+|||-|+ ||.
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 999999993222222211111 111 112234899997 8999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
.+...+.+.|++.....++||++|.
T Consensus 1160 eSErvVQeALd~a~~gRT~IvIAHR 1184 (1228)
T KOG0055|consen 1160 ESERVVQEALDRAMEGRTTIVIAHR 1184 (1228)
T ss_pred hhHHHHHHHHHHhhcCCcEEEEecc
Confidence 9999999999998765556666654
No 362
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.40 E-value=1.5e-12 Score=161.50 Aligned_cols=132 Identities=16% Similarity=0.190 Sum_probs=92.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||++++.|.+++ . +|.|.+++ .++|++|++ .+++.|+
T Consensus 662 ~~G~~v~IvG~~GsGKSTLl~~l~g~~~~-~--~G~i~~~g---------------------~i~yv~Q~~--~l~~~Ti 715 (1522)
T TIGR00957 662 PEGALVAVVGQVGCGKSSLLSALLAEMDK-V--EGHVHMKG---------------------SVAYVPQQA--WIQNDSL 715 (1522)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcc-C--CcEEEECC---------------------EEEEEcCCc--cccCCcH
Confidence 57899999999999999999999999986 2 34565432 368999973 4567899
Q ss_pred HHHHHHHHhhhhH-----HHHhccHHHH----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE-----VQMKNILPAV----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~-----~~~~~~L~~l----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+|||.++...... .+.......+ ..+...+||||| .+|+|++||||++ +|+..
T Consensus 716 ~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~ 795 (1522)
T TIGR00957 716 RENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 795 (1522)
T ss_pred HHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 9999986432111 0111111111 123345899997 7999999999999 99999
Q ss_pred HHHHHHHHHHH--HhCCcEEEEecCCC
Q 007851 307 IVALSGIVSRL--LSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L--~~~G~vvV~TSn~~ 331 (587)
+..+.+.+... ..+|.++|++||+.
T Consensus 796 ~~~i~~~l~~~~~~~~~~tvIlvTH~~ 822 (1522)
T TIGR00957 796 GKHIFEHVIGPEGVLKNKTRILVTHGI 822 (1522)
T ss_pred HHHHHHHHhhhhhhhcCCEEEEEeCCh
Confidence 98888877543 22456555555543
No 363
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.39 E-value=3.2e-13 Score=132.76 Aligned_cols=139 Identities=13% Similarity=0.053 Sum_probs=81.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
+| .++|+||||||||||++++++++++. .+ ..+. +....++.-.-.... .......++++||++...+ .....
T Consensus 22 ~g-~~~i~G~nGsGKStll~al~~l~~~~-~~-~~~~-~~~~~~~~~~~~~~~--~~~~~~~v~~vfq~~~~~~-~~~~~ 94 (197)
T cd03278 22 PG-LTAIVGPNGSGKSNIIDAIRWVLGEQ-SA-KSLR-GEKMSDVIFAGSETR--KPANFAEVTLTFDNSDGRY-SIISQ 94 (197)
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHhccc-cc-hhhc-ccCHHHHhccCCCCC--CCCceEEEEEEEEcCCCce-eEEeh
Confidence 46 89999999999999999999998641 11 1010 000011100000000 0112356899999864431 11001
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC---------------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHH
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ---------------RGASILCFDEIQT-VDVFAIVALSGIVSRLL 318 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq---------------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~ 318 (587)
+.+.... +. ....++.+.+||+|+ ..|++|+||||++ +|+.....+.+++.++.
T Consensus 95 ~~~~~~l---------~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~ 164 (197)
T cd03278 95 GDVSEII---------EA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFS 164 (197)
T ss_pred hhHHHHH---------hC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhc
Confidence 1110000 00 223455566788884 2458999999998 99999999999999986
Q ss_pred hCCcEEEEecCCC
Q 007851 319 STGTVLVATSNRA 331 (587)
Q Consensus 319 ~~G~vvV~TSn~~ 331 (587)
+ +.+||++||..
T Consensus 165 ~-~~tiIiitH~~ 176 (197)
T cd03278 165 K-ETQFIVITHRK 176 (197)
T ss_pred c-CCEEEEEECCH
Confidence 5 56666666653
No 364
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.39 E-value=6.7e-13 Score=131.14 Aligned_cols=132 Identities=16% Similarity=0.129 Sum_probs=87.4
Q ss_pred cEEEEEcCCCChHHHHHHHHH----hccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-C---CC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFY----GATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-N---LP 248 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~----g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~---~~ 248 (587)
..+.|+||||+|||||+++|+ |..++ +.+.+. +. .++ +. .......++++||+.. . ..
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~---~~~~~~-~~--~~~---i~-----~~~~~~~v~~~f~~~~~~~~~v~ 88 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTGELPP---NSKGGA-HD--PKL---IR-----EGEVRAQVKLAFENANGKKYTIT 88 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCc---cccccc-ch--HHH---Hh-----CCCCcEEEEEEEEeCCCCEEEEE
Confidence 399999999999999999995 66553 122222 11 111 11 1123356788888741 1 12
Q ss_pred CCCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------------CCccEEEEeCCCC-CCHHHHH-H
Q 007851 249 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------------RGASILCFDEIQT-VDVFAIV-A 309 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------------~~p~LL~LDEPt~-lD~~~a~-~ 309 (587)
..+++.+|+.+... ..+...+++.+.+||+|+ .+|++|+||||+. +|+..+. .
T Consensus 89 r~~~~~~~~~~~~~--------~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~ 160 (204)
T cd03240 89 RSLAILENVIFCHQ--------GESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEES 160 (204)
T ss_pred EEhhHhhceeeech--------HHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHH
Confidence 23588888865321 112233455666777775 4799999999999 9999999 9
Q ss_pred HHHHHHHHHhC-CcEEEEecCC
Q 007851 310 LSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 310 L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
+.+++.++.+. |.+||++||.
T Consensus 161 l~~~l~~~~~~~~~~iiiitH~ 182 (204)
T cd03240 161 LAEIIEERKSQKNFQLIVITHD 182 (204)
T ss_pred HHHHHHHHHhccCCEEEEEEec
Confidence 99999999776 6666666665
No 365
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.39 E-value=1.4e-12 Score=132.24 Aligned_cols=120 Identities=18% Similarity=0.241 Sum_probs=85.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.++|+|++|||||||-+++.++.+| .+|.|.|.+- ++...-.....+ .|
T Consensus 37 ~~ge~~glVGESG~GKSTlgr~i~~L~~p---t~G~i~f~g~--~i~~~~~~~~~~----------------------~v 89 (268)
T COG4608 37 KEGETLGLVGESGCGKSTLGRLILGLEEP---TSGEILFEGK--DITKLSKEERRE----------------------RV 89 (268)
T ss_pred cCCCEEEEEecCCCCHHHHHHHHHcCcCC---CCceEEEcCc--chhhcchhHHHH----------------------HH
Confidence 57899999999999999999999999986 3467888762 221100000000 00
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhC-
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLST- 320 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~- 320 (587)
.+.+. ....-...+.+++++||||| .+|+++++|||++ +|+..+..+.+||..+.++
T Consensus 90 ~elL~----------~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~ 159 (268)
T COG4608 90 LELLE----------KVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL 159 (268)
T ss_pred HHHHH----------HhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHh
Confidence 00000 00112457889999999997 6999999999999 9999999999999999875
Q ss_pred CcEEEEecCC
Q 007851 321 GTVLVATSNR 330 (587)
Q Consensus 321 G~vvV~TSn~ 330 (587)
|.+.++.||.
T Consensus 160 ~lt~lFIsHD 169 (268)
T COG4608 160 GLTYLFISHD 169 (268)
T ss_pred CCeEEEEEEE
Confidence 8866555554
No 366
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.39 E-value=2.5e-12 Score=127.57 Aligned_cols=140 Identities=11% Similarity=0.026 Sum_probs=84.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCC-----CC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNL-----PF 249 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~-----~~ 249 (587)
.++.+.|+|||||||||||++|.+.+-+...+..+.- .....+. .......++++||..... .+
T Consensus 27 ~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~------~~~~~~~-----~~~~~~~v~~~f~~~~~~~~~~r~~ 95 (213)
T cd03279 27 NNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE------NLRSVFA-----PGEDTAEVSFTFQLGGKKYRVERSR 95 (213)
T ss_pred ccCEEEEECCCCCCHHHHHHHheeeEecCccccccch------hHHHHhc-----CCCccEEEEEEEEECCeEEEEEEec
Confidence 3679999999999999999999865532111222210 0111111 112234578888764221 22
Q ss_pred CCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------C----------CccEEEEeCCCC-CCHHHH
Q 007851 250 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------R----------GASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~----------~p~LL~LDEPt~-lD~~~a 307 (587)
.++..++...... ....+..++++.+.+||+|+ . +|++||||||+. +|+...
T Consensus 96 gl~~~~~~~~~~l------~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~ 169 (213)
T cd03279 96 GLDYDQFTRIVLL------PQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEAL 169 (213)
T ss_pred CCCHHHHHHhhhh------hhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHH
Confidence 2333322211000 00112344555566677774 1 578999999998 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.+++.++.++|.+||++||..
T Consensus 170 ~~~~~~l~~~~~~~~tii~itH~~ 193 (213)
T cd03279 170 EAVATALELIRTENRMVGVISHVE 193 (213)
T ss_pred HHHHHHHHHHHhCCCEEEEEECch
Confidence 999999999987777766666653
No 367
>PTZ00243 ABC transporter; Provisional
Probab=99.38 E-value=2.2e-12 Score=160.16 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=89.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++|.|.+++ .. |.|.++ ..++|++|++ .+++.|+
T Consensus 684 ~~G~~~~IiG~nGsGKSTLL~~i~G~~~~-~~--G~i~~~---------------------~~i~yv~Q~~--~l~~~Tv 737 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQFEI-SE--GRVWAE---------------------RSIAYVPQQA--WIMNATV 737 (1560)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCCCC-CC--cEEEEC---------------------CeEEEEeCCC--ccCCCcH
Confidence 57899999999999999999999999985 23 455321 2579999974 3467899
Q ss_pred HHHHHHHHhhhh----H-HH---Hhc-------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQ----E-VQ---MKN-------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~----~-~~---~~~-------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
+|||.++..... . .. ... .+.....+...+||||| .+|+||+||||++ +|+..
T Consensus 738 ~enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~ 817 (1560)
T PTZ00243 738 RGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHV 817 (1560)
T ss_pred HHHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHH
Confidence 999987532211 0 00 001 11222344466899997 7999999999999 99988
Q ss_pred HHHHHH-HHHHHHhCCcEEEEecCC
Q 007851 307 IVALSG-IVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~-Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+.+ ++.... .|.++|++||.
T Consensus 818 ~~~i~~~~~~~~~-~~~TvIlvTH~ 841 (1560)
T PTZ00243 818 GERVVEECFLGAL-AGKTRVLATHQ 841 (1560)
T ss_pred HHHHHHHHHHHhh-CCCEEEEEeCC
Confidence 776654 444433 46655555554
No 368
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.37 E-value=1.2e-12 Score=131.86 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=44.6
Q ss_pred hHhhhhhcccC-----------C----CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 278 DKFLVDQHADQ-----------R----GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 278 ~~l~~~LSgGq-----------~----~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+..+.+||+|+ . +|++|+||||+. +|+..+..+.+++.++.+ +.++|+|||..
T Consensus 153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~ 221 (243)
T cd03272 153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP 221 (243)
T ss_pred cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH
Confidence 45567889985 1 489999999999 999999999999999865 78888888863
No 369
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.36 E-value=5.9e-13 Score=121.83 Aligned_cols=113 Identities=16% Similarity=0.166 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|+||||||||+++|+|..++ ..+.|.+++. ++.. .... .+..+++++|+ ..++..+|
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~~~---~~G~i~~~~~--~~~~~~~~~-------~~~~i~~~~~~-~~~~~~~t 75 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLLPP---DSGSILINGK--DISDIDIEE-------LRRRIGYVPQD-PQLFPGLT 75 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSSHE---SEEEEEETTE--EGTTSHHHH-------HHHTEEEEESS-HCHHTTSB
T ss_pred cCCCEEEEEccCCCccccceeeecccccc---cccccccccc--ccccccccc-------ccccccccccc-cccccccc
Confidence 46899999999999999999999999975 3567777653 2211 0111 12468999987 56667788
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhh----hhhcccC-----------CCccEEEEeCCCC
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFL----VDQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~----~~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
+.+|..-. ...... ....+..+.+..+ .+||+|+ .+|++|+||||++
T Consensus 76 v~~~~~~~-~~~~~l-~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 76 VRENESDE-RIEEVL-KKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHH-HHHHHH-HHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccc-cccccc-cccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99982110 100000 0011122233334 7899996 7999999999985
No 370
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.35 E-value=5.1e-13 Score=135.70 Aligned_cols=148 Identities=12% Similarity=0.138 Sum_probs=93.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC--------C
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT--------N 246 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~--------~ 246 (587)
.+..++|+||||||||||+++|++.+.+. ..+.+.+.+. .++ ++. ..........++++||+.. .
T Consensus 24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~--~~~~~r~~~~-~~l---i~~-~~~~~~~~~~v~~~fq~~~~~~~~~~~~ 96 (251)
T cd03273 24 DPQFNAITGLNGSGKSNILDAICFVLGIT--NLSTVRASNL-QDL---IYK-RGQAGITKASVTIVFDNSDKSQSPIGFE 96 (251)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhccc--ccccccccCH-HHH---hhc-CCCCCCcEEEEEEEEEcCCcccCccccc
Confidence 46889999999999999999999998642 1233433332 111 111 1111122346888898742 2
Q ss_pred CCCCCcHHHHHHHHHh----hhh----HHHHhccH-------------------------HHHHhHhhhhhcccC-----
Q 007851 247 LPFDSKVMEWVAAEEK----YKQ----EVQMKNIL-------------------------PAVADKFLVDQHADQ----- 288 (587)
Q Consensus 247 ~~~~~tV~eni~~~~~----~~~----~~~~~~~L-------------------------~~la~~l~~~LSgGq----- 288 (587)
..+.++|.+++..+.. ..+ .......+ ...++..+.+||+|+
T Consensus 97 ~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~ 176 (251)
T cd03273 97 NYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVA 176 (251)
T ss_pred CCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHH
Confidence 2335666666543221 000 01111111 133455677899996
Q ss_pred ----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 289 ----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 ----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+|++|++|||+. +|+.....+.+++.++. +|.++|++||+
T Consensus 177 la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~ 228 (251)
T cd03273 177 LSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLK 228 (251)
T ss_pred HHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECC
Confidence 2579999999998 99999999999999985 47777777776
No 371
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.35 E-value=2.3e-12 Score=122.47 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=95.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh---HHHHHHHHHHHhhhhhhcccceeeeeccCCC-CCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA---MLKINEHMHRLWKNQVAEKSLRSSISGWITN-LPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f---m~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~-~~~ 249 (587)
-||+.++|+|.+|||||||+++|.+.+.|. .+.|+|..- ..++... .+..+ +.-.+..-|+|.|++.. +-.
T Consensus 30 ~PGeVLgiVGESGSGKtTLL~~is~rl~p~---~G~v~Y~~r~~~~~dl~~m-sEaeR-R~L~RTeWG~VhQnP~DGLRm 104 (258)
T COG4107 30 YPGEVLGIVGESGSGKTTLLKCISGRLTPD---AGTVTYRMRDGQPRDLYTM-SEAER-RRLLRTEWGFVHQNPRDGLRM 104 (258)
T ss_pred cCCcEEEEEecCCCcHHhHHHHHhcccCCC---CCeEEEEcCCCCchhHhhh-chHHH-HHHhhhccceeecCcccccee
Confidence 479999999999999999999999999862 345665431 1222211 01000 00011224788887532 222
Q ss_pred CCcHHHHH----H-HHHhhhhHH--HHhccHHH------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 250 DSKVMEWV----A-AEEKYKQEV--QMKNILPA------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 250 ~~tV~eni----~-~~~~~~~~~--~~~~~L~~------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
..+...|| + .+.+.++.. ...+.+.. -.+..+..+|||+ ..|+++++||||- +|+
T Consensus 105 ~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDV 184 (258)
T COG4107 105 QVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDV 184 (258)
T ss_pred eeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcch
Confidence 22333333 2 233333321 11122221 2456677889995 6999999999998 999
Q ss_pred HHHHHHHHHHHHHHhC-Cc-EEEEecCCC
Q 007851 305 FAIVALSGIVSRLLST-GT-VLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~-G~-vvV~TSn~~ 331 (587)
.-+..|.++++.|..+ |. +||+||+..
T Consensus 185 SVQARLLDllrgLv~~l~la~viVTHDl~ 213 (258)
T COG4107 185 SVQARLLDLLRGLVRELGLAVVIVTHDLA 213 (258)
T ss_pred hhHHHHHHHHHHHHHhcCceEEEEechhH
Confidence 9999999999999865 76 566676654
No 372
>PRK08181 transposase; Validated
Probab=99.31 E-value=1.4e-11 Score=126.84 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.+++++|+||+|+|||+|+.+++..+-. .+..+.|... .++...+....
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~---~g~~v~f~~~-~~L~~~l~~a~--------------------------- 153 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIE---NGWRVLFTRT-TDLVQKLQVAR--------------------------- 153 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH---cCCceeeeeH-HHHHHHHHHHH---------------------------
Confidence 4678999999999999999999875531 2345555442 22222221110
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
....+..+.+.+ .+++|||+||+.. .+...+..|.+++....++ ..+|+|||.+|
T Consensus 154 --------------~~~~~~~~l~~l--------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~-~s~IiTSN~~~ 210 (269)
T PRK08181 154 --------------RELQLESAIAKL--------DKFDLLILDDLAYVTKDQAETSVLFELISARYER-RSILITANQPF 210 (269)
T ss_pred --------------hCCcHHHHHHHH--------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhC-CCEEEEcCCCH
Confidence 001122333444 4789999999986 7778888999999988776 57889999999
Q ss_pred cccccCCchhHHhHHHHHhhccceeEEecCCchhhhhhh
Q 007851 333 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 333 edLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
.+|+.---+...-...+++|.++|.++.+.++ |||+..
T Consensus 211 ~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~-s~R~~~ 248 (269)
T PRK08181 211 GEWNRVFPDPAMTLAAVDRLVHHATIFEMNVE-SYRRRT 248 (269)
T ss_pred HHHHHhcCCccchhhHHHhhhcCceEEecCCc-cchhHH
Confidence 99876321222234567999999999999975 999864
No 373
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.31 E-value=3.8e-12 Score=136.40 Aligned_cols=143 Identities=15% Similarity=0.207 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||+|+||||+|++++..... .+|. |.+++ +++.. ..+.+ ++.+|.|+|+ ..+|+-|
T Consensus 562 ~pGktvAlVG~SGaGKSTimRlLfRffdv-~sGs--I~iDg--qdIrnvt~~SL-------Rs~IGVVPQD--tvLFNdT 627 (790)
T KOG0056|consen 562 QPGKTVALVGPSGAGKSTIMRLLFRFFDV-NSGS--ITIDG--QDIRNVTQSSL-------RSSIGVVPQD--TVLFNDT 627 (790)
T ss_pred cCCcEEEEECCCCCchhHHHHHHHHHhhc-cCce--EEEcC--chHHHHHHHHH-------HHhcCcccCc--ceeecce
Confidence 57999999999999999999999998874 2444 44454 34432 12233 3578999996 5778889
Q ss_pred HHHHHHHHHhhhhHHHH---------hccHHH-------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM---------KNILPA-------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~---------~~~L~~-------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+..||.++....+..+. .+.+.. ...+....||||+ +.|.+++|||-|+ +|-
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 99999886543321111 111100 1111223799997 7999999999998 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.....+..-+.++.+..++||++|..
T Consensus 708 ~tER~IQaaL~rlca~RTtIVvAHRL 733 (790)
T KOG0056|consen 708 NTERAIQAALARLCANRTTIVVAHRL 733 (790)
T ss_pred ccHHHHHHHHHHHhcCCceEEEeeee
Confidence 99999999999999888888777653
No 374
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.31 E-value=4.9e-12 Score=124.65 Aligned_cols=123 Identities=13% Similarity=0.082 Sum_probs=80.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.++.+.|.|||||||||||+++++...- ...+..+. ...+++| ...+++.+++.
T Consensus 24 ~g~~~~ltGpNg~GKSTllr~i~~~~~l-~~~G~~v~------------------------a~~~~~q-~~~l~~~~~~~ 77 (199)
T cd03283 24 KKNGILITGSNMSGKSTFLRTIGVNVIL-AQAGAPVC------------------------ASSFELP-PVKIFTSIRVS 77 (199)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHH-HHcCCEEe------------------------cCccCcc-cceEEEeccch
Confidence 4689999999999999999999875420 00011110 0124455 35677788999
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhCCcEEEEecCCC
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVAL-SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
||+..+....... . ..+..+.+... ..+|++|++|||+. +|+.+...+ ..+++.+.+.|.++|++||..
T Consensus 78 d~l~~~~s~~~~e-~-~~~~~iL~~~~------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~~~~tiiivTH~~ 148 (199)
T cd03283 78 DDLRDGISYFYAE-L-RRLKEIVEKAK------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKNKNTIGIISTHDL 148 (199)
T ss_pred hccccccChHHHH-H-HHHHHHHHhcc------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCcH
Confidence 9997764322111 1 11233333331 13799999999998 999988765 557888887788777777764
No 375
>PRK08939 primosomal protein DnaI; Reviewed
Probab=99.30 E-value=2.3e-11 Score=127.41 Aligned_cols=141 Identities=19% Similarity=0.268 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.++|+||+||+|+|||+|+.+++..+...-.....+++..|+.++.. ...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~----~~~-------------------------- 204 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN----SIS-------------------------- 204 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH----HHh--------------------------
Confidence 46899999999999999999999876411011123344344333221 100
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHH-HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAI-VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a-~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+....+.+ .+++||||||+.. +....+ .+|..++.....++..+|+|||..
T Consensus 205 ---------------~~~~~~~l~~l--------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~ 261 (306)
T PRK08939 205 ---------------DGSVKEKIDAV--------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD 261 (306)
T ss_pred ---------------cCcHHHHHHHh--------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence 01123334444 5799999999987 444444 455566676666778999999999
Q ss_pred ccccccC------C-chhHHhHHHHHhhccceeEEecCCchhhhh
Q 007851 332 PWDLNQD------G-MQREIFQKLVAKLEKHCEIIPIGSEVDYRR 369 (587)
Q Consensus 332 PedLy~~------g-l~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~ 369 (587)
+++|... | .....-...+++|.+.|++|.+.|. |||.
T Consensus 262 ~~el~~~~~~~~~g~~e~~~a~ri~dRI~~~~~~i~l~G~-s~R~ 305 (306)
T PRK08939 262 FDELEHHLAYTQRGEDETWKAARIMERIRYLAKEVHLEGK-NRRN 305 (306)
T ss_pred HHHHHHHHhhhccCcchhhHHHHHHHHHHHhcEEEEeecC-CCCC
Confidence 9998762 2 2344455788999999999999886 8885
No 376
>PRK09183 transposase/IS protein; Provisional
Probab=99.29 E-value=3e-11 Score=123.75 Aligned_cols=144 Identities=17% Similarity=0.179 Sum_probs=97.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..++.++|+||+|+|||||+.+++..+.. .+..+.|... .++...+.....
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~---~G~~v~~~~~-~~l~~~l~~a~~------------------------- 150 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVR---AGIKVRFTTA-ADLLLQLSTAQR------------------------- 150 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeH-HHHHHHHHHHHH-------------------------
Confidence 45789999999999999999999766431 2235544331 122111111000
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+..+..... ..+++|++||+.. .+...+..|..++....+++ .+|+|||.+
T Consensus 151 ----------------~~~~~~~~~~~~-------~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~-s~iiTsn~~ 206 (259)
T PRK09183 151 ----------------QGRYKTTLQRGV-------MAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKG-SMILTSNLP 206 (259)
T ss_pred ----------------CCcHHHHHHHHh-------cCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcC-cEEEecCCC
Confidence 001112222211 4689999999986 77778888999999887766 578899999
Q ss_pred ccccccCC-chhHHhHHHHHhhccceeEEecCCchhhhhhh
Q 007851 332 PWDLNQDG-MQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 332 PedLy~~g-l~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
|.+|+.-- -+...-...+++|.++|.++.++|+ |||...
T Consensus 207 ~~~w~~~~~~d~~~~~ai~dRl~~~~~~i~~~g~-s~R~~~ 246 (259)
T PRK09183 207 FGQWDQTFAGDAALTSAMLDRLLHHSHVVQIKGE-SYRLKQ 246 (259)
T ss_pred HHHHHHHhcCchhHHHHHHHHHhcceEEEeecCC-CCcccc
Confidence 99987642 2233445678999999999999975 999864
No 377
>PRK06526 transposase; Provisional
Probab=99.27 E-value=3e-11 Score=123.48 Aligned_cols=142 Identities=20% Similarity=0.169 Sum_probs=97.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.+++++|+||+|+|||+|+..++..+. ..+.++.|... .++...+....
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~---~~g~~v~f~t~-~~l~~~l~~~~--------------------------- 145 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRAC---QAGHRVLFATA-AQWVARLAAAH--------------------------- 145 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHH---HCCCchhhhhH-HHHHHHHHHHH---------------------------
Confidence 467999999999999999999986543 12345555332 12221111100
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
....+....+.+ .++++|++||+.. .+...+..|..++....+++ .+|+|||.++
T Consensus 146 --------------~~~~~~~~l~~l--------~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~-s~IitSn~~~ 202 (254)
T PRK06526 146 --------------HAGRLQAELVKL--------GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERA-SLIVTSNKPF 202 (254)
T ss_pred --------------hcCcHHHHHHHh--------ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcC-CEEEEcCCCH
Confidence 000112222333 3689999999986 67888888999998877665 6889999999
Q ss_pred cccccCCchhHHhHHHHHhhccceeEEecCCchhhhhhh
Q 007851 333 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 333 edLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
.+|+.---++..-...+++|.++|+++.+.|+ |||.+.
T Consensus 203 ~~w~~~~~d~~~a~ai~dRl~~~~~~i~~~g~-s~R~~~ 240 (254)
T PRK06526 203 GRWGEVFGDDVVAAAMIDRLVHHAEVISLKGD-SYRLKD 240 (254)
T ss_pred HHHHHHcCChHHHHHHHHHHhcCceEEeecCC-Ccchhh
Confidence 98876433445555678999999999999975 999865
No 378
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.25 E-value=1.9e-11 Score=132.84 Aligned_cols=135 Identities=21% Similarity=0.307 Sum_probs=85.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
......+.|+||||||||||+++++|.+.| ..|..+-|-|..+...+...+ ..+..+.+
T Consensus 413 id~~srvAlVGPNG~GKsTLlKl~~gdl~p-~~G~vs~~~H~~~~~y~Qh~~--------------------e~ldl~~s 471 (614)
T KOG0927|consen 413 IDLDSRVALVGPNGAGKSTLLKLITGDLQP-TIGMVSRHSHNKLPRYNQHLA--------------------EQLDLDKS 471 (614)
T ss_pred cCcccceeEecCCCCchhhhHHHHhhcccc-ccccccccccccchhhhhhhH--------------------hhcCcchh
Confidence 345688999999999999999999999986 345544444443221111110 12334556
Q ss_pred HHHHHHHHHhh-hhHHHHhcc-----HH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 253 VMEWVAAEEKY-KQEVQMKNI-----LP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 253 V~eni~~~~~~-~~~~~~~~~-----L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
+.++++-.... ........+ +. ......+.+||+|+ ..|.||+|||||. +|+...+.+.+.
T Consensus 472 ~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea 551 (614)
T KOG0927|consen 472 SLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA 551 (614)
T ss_pred HHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH
Confidence 66666432211 111111111 11 22344567899997 7999999999999 999999888888
Q ss_pred HHHHHhCCcEEEEecCC
Q 007851 314 VSRLLSTGTVLVATSNR 330 (587)
Q Consensus 314 l~~L~~~G~vvV~TSn~ 330 (587)
|.+. .|++|+++|+.
T Consensus 552 iNe~--~Ggvv~vSHDf 566 (614)
T KOG0927|consen 552 INEF--PGGVVLVSHDF 566 (614)
T ss_pred Hhcc--CCceeeeechh
Confidence 8765 46666666654
No 379
>PLN03073 ABC transporter F family; Provisional
Probab=99.25 E-value=8.9e-12 Score=144.09 Aligned_cols=52 Identities=15% Similarity=0.163 Sum_probs=42.8
Q ss_pred HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 276 VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 276 la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
..++.+.+||||+ .+|+||+||||+. +|+.....|.++|..+ |.+||++||.
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~tviivsHd 400 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PKTFIVVSHA 400 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CCEEEEEECC
Confidence 3566678999997 7999999999999 9999999999998876 5555555554
No 380
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.22 E-value=1.1e-10 Score=112.05 Aligned_cols=145 Identities=18% Similarity=0.178 Sum_probs=99.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC-CCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT-NLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~-~~~~~~t 252 (587)
..++.++++|.||||||||.++++|.++|+ ++++.|++....... ...+.+.+.++||++. .+.|.+.
T Consensus 37 ~~~QTlaiIG~NGSGKSTLakMlaGmi~PT---sG~il~n~~~L~~~D--------y~~R~k~IRMiFQDpnts~NPRl~ 105 (267)
T COG4167 37 REGQTLAIIGENGSGKSTLAKMLAGMIEPT---SGEILINDHPLHFGD--------YSFRSKRIRMIFQDPNTSLNPRLR 105 (267)
T ss_pred cCCcEEEEEccCCCcHhHHHHHHhcccCCC---CceEEECCccccccc--------hHhhhhheeeeecCCccccChhhh
Confidence 468999999999999999999999999862 467777763221111 1122356889999874 4555566
Q ss_pred HHHHHHHHHhhhhH-------HHHhc------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYKQE-------VQMKN------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~~~-------~~~~~------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
+..-+..+++.... ....+ .+++-++-++..||.|| .+|+|++.||-.. +|.+-.
T Consensus 106 iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smr 185 (267)
T COG4167 106 IGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMR 185 (267)
T ss_pred hhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHH
Confidence 66666665543210 00111 12334555555666665 6999999999987 999999
Q ss_pred HHHHHHHHHHHhC-CcEEE-EecC
Q 007851 308 VALSGIVSRLLST-GTVLV-ATSN 329 (587)
Q Consensus 308 ~~L~~Ll~~L~~~-G~vvV-~TSn 329 (587)
..|.+|+-+|.++ |+.-| ++-|
T Consensus 186 sQl~NL~LeLQek~GiSyiYV~Qh 209 (267)
T COG4167 186 SQLINLMLELQEKQGISYIYVTQH 209 (267)
T ss_pred HHHHHHHHHHHHHhCceEEEEech
Confidence 9999999999876 88554 4444
No 381
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.21 E-value=5.4e-11 Score=119.30 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=46.6
Q ss_pred HhHhhhhhcccC-----------CCc--cEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 277 ADKFLVDQHADQ-----------RGA--SILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~p--~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++.+.+||||+ .+| ++|+||||+. +|+..+..+.++|..+.++|.++|++||..
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~ 199 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDE 199 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCH
Confidence 566778999997 466 6999999998 999999999999999987888777666653
No 382
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.8e-10 Score=122.34 Aligned_cols=144 Identities=13% Similarity=0.177 Sum_probs=100.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.+.++|++|+||||++++++..+.+. . |.|..++ +++..- .+ ...++.+|+|+|+ ..+++-|
T Consensus 286 i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~-s--G~I~id~--qdir~v----tq--~slR~aIg~VPQD--tvLFNDt 352 (497)
T COG5265 286 IPLGKTVAIVGESGAGKSTILRLLFRFYDVN-S--GSITIDG--QDIRDV----TQ--QSLRRAIGIVPQD--TVLFNDT 352 (497)
T ss_pred ccCccEEEEEeCCCCcHHHHHHHHHHHhCCc-C--ceEEEcc--hhHHHh----HH--HHHHHHhCcCccc--ceehhhh
Confidence 3578999999999999999999999999852 3 4555554 233211 11 1123568999996 5678889
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHH-------HhHhh----hhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAV-------ADKFL----VDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~l-------a~~l~----~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
...|+.++.......+. ...+..+ .+..+ ..||||+ ++|+||+|||-|+ ||-
T Consensus 353 i~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt 432 (497)
T COG5265 353 IAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDT 432 (497)
T ss_pred HHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhh
Confidence 99999886543221110 0011111 11111 2689996 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
.....+..-++.+.+..+++|+.|.
T Consensus 433 ~te~~iq~~l~~~~~~rttlviahr 457 (497)
T COG5265 433 HTEQAIQAALREVSAGRTTLVIAHR 457 (497)
T ss_pred hHHHHHHHHHHHHhCCCeEEEEeeh
Confidence 9999999999998866667777665
No 383
>PRK08116 hypothetical protein; Validated
Probab=99.16 E-value=1.8e-10 Score=118.55 Aligned_cols=140 Identities=19% Similarity=0.274 Sum_probs=93.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
+.|++|+|++|+|||+|+.+++..+.. .+..+.|..+ .++...+.......
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~---~~~~v~~~~~-~~ll~~i~~~~~~~------------------------- 164 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIE---KGVPVIFVNF-PQLLNRIKSTYKSS------------------------- 164 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHH---cCCeEEEEEH-HHHHHHHHHHHhcc-------------------------
Confidence 568999999999999999999987641 1234555442 12111111100000
Q ss_pred HHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 007851 256 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 256 ni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
.......+.+.+ .+++||+|||+.. ........|..+|......|..+|+|||..|+
T Consensus 165 -------------~~~~~~~~~~~l--------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~~~ 223 (268)
T PRK08116 165 -------------GKEDENEIIRSL--------VNADLLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLSLE 223 (268)
T ss_pred -------------ccccHHHHHHHh--------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
Confidence 000112233333 4689999999976 44455677889999988888999999999998
Q ss_pred ccccCCchhHHhHHHHHhhccceeEEecCCchhhhhhh
Q 007851 334 DLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 334 dLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
+|-.. + -...+++|...|.+|.+.++ |||...
T Consensus 224 eL~~~-~----~~ri~sRl~e~~~~v~~~g~-d~R~~~ 255 (268)
T PRK08116 224 ELKNQ-Y----GKRIYDRILEMCTPVENEGK-SYRKEI 255 (268)
T ss_pred HHHHH-H----hHHHHHHHHHcCEEEEeeCc-ChhHHH
Confidence 86542 1 13457788889999999875 999864
No 384
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.16 E-value=2e-10 Score=117.73 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=61.7
Q ss_pred CCCCCcHHHHHHHHHhhhhHHHHh-----ccHHH-HHhHhhhhhcccC-----------C---CccEEEEeCCCC-CCHH
Q 007851 247 LPFDSKVMEWVAAEEKYKQEVQMK-----NILPA-VADKFLVDQHADQ-----------R---GASILCFDEIQT-VDVF 305 (587)
Q Consensus 247 ~~~~~tV~eni~~~~~~~~~~~~~-----~~L~~-la~~l~~~LSgGq-----------~---~p~LL~LDEPt~-lD~~ 305 (587)
...++||.|++.+........... ..+.. ..++.+.+||||+ . +|++++||||++ +|+.
T Consensus 127 ~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~ 206 (261)
T cd03271 127 DVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFH 206 (261)
T ss_pred HHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHH
Confidence 345789999988765433211111 12233 3566678999996 3 489999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+...+.++|..+.+.|.+||+++|.
T Consensus 207 ~~~~l~~~L~~l~~~g~tvIiitH~ 231 (261)
T cd03271 207 DVKKLLEVLQRLVDKGNTVVVIEHN 231 (261)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9999999999998888877777775
No 385
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.14 E-value=4.2e-10 Score=120.47 Aligned_cols=156 Identities=16% Similarity=0.218 Sum_probs=91.4
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-----HHHHHhhhhhhcccceeeeeccC--
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-----HMHRLWKNQVAEKSLRSSISGWI-- 244 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-----~l~~~~~~~~~~~~~ig~v~q~~-- 244 (587)
.|.+|+.++|+|+||.||||.+++++|.+.|.. |+ ..-..-..++.+ .+....++..+..-++..-+|-.
T Consensus 96 ~pr~G~V~GilG~NGiGKsTalkILaGel~PNL-G~--~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~ 172 (591)
T COG1245 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPNL-GR--YEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDL 172 (591)
T ss_pred CCCCCcEEEEEcCCCccHHHHHHHHhCccccCC-CC--CCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHH
Confidence 467899999999999999999999999987632 21 100000011111 11111111111111111112210
Q ss_pred CCCCCCCcHHHHHHHHHhhhhHHH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 245 TNLPFDSKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 245 ~~~~~~~tV~eni~~~~~~~~~~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+.....+|.|.+.-........+ ..-.|..+.++-+.+||||+ +++++.+||||++ ||+..++..
T Consensus 173 iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ 252 (591)
T COG1245 173 IPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNA 252 (591)
T ss_pred HHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHH
Confidence 111222344444432211000011 11235667888889999996 8999999999999 999999999
Q ss_pred HHHHHHHHhCCc-EEEEecCC
Q 007851 311 SGIVSRLLSTGT-VLVATSNR 330 (587)
Q Consensus 311 ~~Ll~~L~~~G~-vvV~TSn~ 330 (587)
.+++++|.+.+. +||+-|+.
T Consensus 253 ar~Irel~~~~k~ViVVEHDL 273 (591)
T COG1245 253 ARVIRELAEDGKYVIVVEHDL 273 (591)
T ss_pred HHHHHHHhccCCeEEEEechH
Confidence 999999998766 55555553
No 386
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.13 E-value=2.3e-10 Score=137.61 Aligned_cols=131 Identities=18% Similarity=0.185 Sum_probs=90.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+.|+-++++|++|||||+|+.++.|.++. .+|+ +..++ .++|++|. +-.++.|
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~-~sG~--v~v~g---------------------siaYv~Q~--pWI~ngT 597 (1381)
T KOG0054|consen 544 IKKGQLVAVVGPVGSGKSSLLSAILGEMPK-LSGS--VAVNG---------------------SVAYVPQQ--PWIQNGT 597 (1381)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcCccc-ccce--EEEcC---------------------eEEEeccc--cHhhCCc
Confidence 357899999999999999999999999985 3444 43332 36888885 6778899
Q ss_pred HHHHHHHHHhhhhH-----HHHhccHHH----------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQE-----VQMKNILPA----------VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~~-----~~~~~~L~~----------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|+|||.|+..+... .+....-.+ ...+...+||||| ++++|.+||.|.+ +|..
T Consensus 598 vreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDah 677 (1381)
T KOG0054|consen 598 VRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAH 677 (1381)
T ss_pred HHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHh
Confidence 99999998664331 111111011 1222345899998 7999999999998 9988
Q ss_pred HHHHH-HHHHHHHHhCCcEEEEecC
Q 007851 306 AIVAL-SGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 306 ~a~~L-~~Ll~~L~~~G~vvV~TSn 329 (587)
.+..| .+.+..+.+..++|++||+
T Consensus 678 vg~~if~~ci~~~L~~KT~ILVTHq 702 (1381)
T KOG0054|consen 678 VGKHIFEECIRGLLRGKTVILVTHQ 702 (1381)
T ss_pred hhHHHHHHHHHhhhcCCEEEEEeCc
Confidence 76554 4555444444445566654
No 387
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.12 E-value=4.4e-10 Score=110.63 Aligned_cols=134 Identities=12% Similarity=0.126 Sum_probs=76.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH--
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM-- 254 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~-- 254 (587)
...+|+||||+||||||++++..+.+......+- ..+.++ ++ .+.....+.+.|++........+..
T Consensus 22 gl~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~---~~~~~~---i~-----~~~~~~~i~~~~~~~~~~~~~~~~~~~ 90 (198)
T cd03276 22 RVNFIVGNNGSGKSAILTALTIGLGGKASDTNRG---SSLKDL---IK-----DGESSAKITVTLKNQGLDANPLCVLSQ 90 (198)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhcCCccccccc---ccHHHH---hh-----CCCCeEEEEEEEEcCCccCCcCCHHHH
Confidence 4568999999999999999986543211100110 011111 11 1122345667776532111111111
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC---------------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHH
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ---------------RGASILCFDEIQT-VDVFAIVALSGIVSRLL 318 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq---------------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~ 318 (587)
+.+...+ .. ....++.+.+||+|+ .+|++|+||||+. +|+.....+.++|.++.
T Consensus 91 ~~~~~~l--------~~--~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~ 160 (198)
T cd03276 91 DMARSFL--------TS--NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEA 160 (198)
T ss_pred HHHHHHh--------cc--ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHH
Confidence 0000000 00 122344556677774 4899999999999 99999999999999986
Q ss_pred hC--C-cEEEEecCCC
Q 007851 319 ST--G-TVLVATSNRA 331 (587)
Q Consensus 319 ~~--G-~vvV~TSn~~ 331 (587)
.. | .+||+++|..
T Consensus 161 ~~~~~~~~iii~th~~ 176 (198)
T cd03276 161 KKQPGRQFIFITPQDI 176 (198)
T ss_pred hcCCCcEEEEEECCcc
Confidence 53 3 4777777765
No 388
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=99.11 E-value=1.1e-10 Score=113.12 Aligned_cols=131 Identities=19% Similarity=0.310 Sum_probs=69.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.+++++|+||+|+|||+|.-+++..+- ..+..+.|-.. .++...+ +....
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~---~~g~~v~f~~~-~~L~~~l---~~~~~----------------------- 95 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAI---RKGYSVLFITA-SDLLDEL---KQSRS----------------------- 95 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHH---HTT--EEEEEH-HHHHHHH---HCCHC-----------------------
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhc---cCCcceeEeec-Cceeccc---ccccc-----------------------
Confidence 468999999999999999999986543 12344555443 2222222 21000
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
........+++ .+++||+|||+.. .+......|.+++....+++ .+|+|||..+
T Consensus 96 ---------------~~~~~~~~~~l--------~~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~~ 151 (178)
T PF01695_consen 96 ---------------DGSYEELLKRL--------KRVDLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLSP 151 (178)
T ss_dssp ---------------CTTHCHHHHHH--------HTSSCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-H
T ss_pred ---------------ccchhhhcCcc--------ccccEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCch
Confidence 00112233444 3689999999987 67777888999999988764 6778999999
Q ss_pred cccccCCchhHHhHHHHHhhccceeEE
Q 007851 333 WDLNQDGMQREIFQKLVAKLEKHCEII 359 (587)
Q Consensus 333 edLy~~gl~r~~F~p~I~~L~~~~~Vv 359 (587)
++|..---++..-.+.+++|.++|+||
T Consensus 152 ~~l~~~~~d~~~a~aildRl~~~~~~i 178 (178)
T PF01695_consen 152 SELEEVLGDRALAEAILDRLLHHCHVI 178 (178)
T ss_dssp HHHHT----------------------
T ss_pred hhHhhccccccccccccccccccccCC
Confidence 998875556667778899999999986
No 389
>PRK12377 putative replication protein; Provisional
Probab=99.10 E-value=6.1e-10 Score=113.39 Aligned_cols=138 Identities=12% Similarity=0.131 Sum_probs=94.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
..+++|+||+|+|||+|+.+++..+.. .+..+.|... .++...+.....
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~---~g~~v~~i~~-~~l~~~l~~~~~--------------------------- 149 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLA---KGRSVIVVTV-PDVMSRLHESYD--------------------------- 149 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCeEEEEH-HHHHHHHHHHHh---------------------------
Confidence 468999999999999999999987642 2234444432 122222211100
Q ss_pred HHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 007851 256 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 256 ni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
.......+.+.+ .+++|||+||+.. ........|..++.....++..+|+|||..++
T Consensus 150 -------------~~~~~~~~l~~l--------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~~~ 208 (248)
T PRK12377 150 -------------NGQSGEKFLQEL--------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLNHE 208 (248)
T ss_pred -------------ccchHHHHHHHh--------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCCHH
Confidence 000012233333 5799999999966 56667889999999998888888999999998
Q ss_pred ccccCCchhHHhHHHHHhhccc-eeEEecCCchhhhhhh
Q 007851 334 DLNQDGMQREIFQKLVAKLEKH-CEIIPIGSEVDYRRLI 371 (587)
Q Consensus 334 dLy~~gl~r~~F~p~I~~L~~~-~~Vv~l~~~~DyR~~~ 371 (587)
+|... + =.+.+++|.+. |.+|.++++ |||...
T Consensus 209 ~l~~~-~----~~ri~dRl~~~~~~~v~~~g~-s~R~~~ 241 (248)
T PRK12377 209 AMSTL-L----GERVMDRMTMNGGRWVNFNWE-SWRPNV 241 (248)
T ss_pred HHHHH-h----hHHHHHHHhhCCCeEEEeCCc-Cccccc
Confidence 87642 1 12467888764 799999986 899864
No 390
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.10 E-value=3e-10 Score=124.63 Aligned_cols=152 Identities=17% Similarity=0.188 Sum_probs=105.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccC--CCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWI--TNLPFD 250 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~--~~~~~~ 250 (587)
..+|+.++|.|-.|+|+|-|+.+|+|.-+. ..+.|.+++.-..+..... .....++|++.+. ..++..
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~~~sp~~-------Ai~~Gi~~v~EDRk~~Gl~l~ 351 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPA---SSGEILLDGKPVRIRSPRD-------AIKAGIAYVPEDRKSEGLVLD 351 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcC---CCceEEECCEEccCCCHHH-------HHHcCCEeCCcccccCcCcCC
Confidence 357999999999999999999999996653 2455666653222211111 1234688888875 468889
Q ss_pred CcHHHHHHHHHh-h-hh-----HHHHhccHHHH----------HhHhhhhhcccC-----------CCccEEEEeCCCC-
Q 007851 251 SKVMEWVAAEEK-Y-KQ-----EVQMKNILPAV----------ADKFLVDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 251 ~tV~eni~~~~~-~-~~-----~~~~~~~L~~l----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
+++.+|+.++.. . .. ........... .+..+..||||- .+|+||+|||||.
T Consensus 352 ~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRG 431 (500)
T COG1129 352 MSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRG 431 (500)
T ss_pred CcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcC
Confidence 999999987621 1 10 00011111111 223456899993 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccc
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
.|+.....+.+++.+|.++|+.||+.|...||-
T Consensus 432 IDVGAK~eIy~li~~lA~~G~ail~iSSElpEl 464 (500)
T COG1129 432 IDVGAKAEIYRLIRELAAEGKAILMISSELPEL 464 (500)
T ss_pred cccchHHHHHHHHHHHHHCCCEEEEEeCChHHH
Confidence 999999999999999999999766666655553
No 391
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.09 E-value=2.6e-10 Score=137.19 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=116.8
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
..+++.|+|+|..|||||||+.+++....+ ..|++.| ++. ++.+ .+|.++ ++++.+||+ +.+|..
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~-~~G~I~I--Dgv--dI~~igL~dLR-------srlsIIPQd--PvLFsG 1228 (1381)
T KOG0054|consen 1163 IKPGEKVGIVGRTGAGKSSLILALFRLVEP-AEGEILI--DGV--DISKIGLHDLR-------SRLSIIPQD--PVLFSG 1228 (1381)
T ss_pred EcCCceEEEeCCCCCCHHHHHHHHHHhcCc-cCCeEEE--cCe--ecccccHHHHH-------hcCeeeCCC--CceecC
Confidence 357899999999999999999999999986 3454444 442 3322 456665 468999996 688999
Q ss_pred cHHHHHHHHHhhhhHH--H--HhccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 252 KVMEWVAAEEKYKQEV--Q--MKNILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 252 tV~eni~~~~~~~~~~--~--~~~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|++.|+--...+.... + ....+.++...++ .++|-|| ++.+||+|||.|+ .|+
T Consensus 1229 TvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~ 1308 (1381)
T KOG0054|consen 1229 TVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDP 1308 (1381)
T ss_pred ccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCCh
Confidence 9999984221111100 0 0011112221221 2566665 7999999999998 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhh
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDY 367 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~Dy 367 (587)
.+-..+.+.+++-|+. .||+...||.+.-+..+.+ +.-+.++|++.|++...
T Consensus 1309 ~TD~lIQ~tIR~~F~d-cTVltIAHRl~TVmd~DrV----------lVld~G~v~EfdsP~~L 1360 (1381)
T KOG0054|consen 1309 ETDALIQKTIREEFKD-CTVLTIAHRLNTVMDSDRV----------LVLDAGRVVEFDSPAEL 1360 (1381)
T ss_pred HHHHHHHHHHHHHhcC-CeEEEEeeccchhhhcCeE----------EEeeCCeEeecCChHHH
Confidence 9999999999998876 5666666777666555544 45578888888887433
No 392
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.08 E-value=2.6e-11 Score=120.60 Aligned_cols=40 Identities=13% Similarity=0.260 Sum_probs=32.8
Q ss_pred CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 290 GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 290 ~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
.|++||||||++ +|+.....+.+++.++.+.+++|++||+
T Consensus 149 ~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~ 189 (212)
T cd03274 149 PTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLR 189 (212)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECc
Confidence 379999999999 9999999999999998654555555543
No 393
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.08 E-value=5.1e-10 Score=125.13 Aligned_cols=134 Identities=15% Similarity=0.125 Sum_probs=97.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+.++|.|+||||||||+++|+|+=|- +.|+|.+.. ...+-|++| .+.++..|
T Consensus 416 v~~G~~llI~G~SG~GKTsLlRaiaGLWP~---g~G~I~~P~-------------------~~~~lflpQ--~PY~p~Gt 471 (604)
T COG4178 416 VRPGERLLITGESGAGKTSLLRALAGLWPW---GSGRISMPA-------------------DSALLFLPQ--RPYLPQGT 471 (604)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHhccCcc---CCCceecCC-------------------CCceEEecC--CCCCCCcc
Confidence 457999999999999999999999999872 556665431 122345555 46677779
Q ss_pred HHHHHHHHHhh--hhHHH-----HhccHHHHHhHh------hhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKY--KQEVQ-----MKNILPAVADKF------LVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~--~~~~~-----~~~~L~~la~~l------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
.+|-|.++... .+..+ .+..|.+++.++ -..||+|+ ++|+++||||-|+ +|....
T Consensus 472 Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e 551 (604)
T COG4178 472 LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETE 551 (604)
T ss_pred HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHH
Confidence 99999887543 12111 122334444433 35799997 8999999999998 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.+++++-. .+++||.++|++
T Consensus 552 ~~l~q~l~~~l-p~~tvISV~Hr~ 574 (604)
T COG4178 552 DRLYQLLKEEL-PDATVISVGHRP 574 (604)
T ss_pred HHHHHHHHhhC-CCCEEEEeccch
Confidence 88888776532 478999999986
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.6e-10 Score=122.47 Aligned_cols=52 Identities=17% Similarity=0.207 Sum_probs=38.0
Q ss_pred HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcE-EEEecCC
Q 007851 276 VADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTV-LVATSNR 330 (587)
Q Consensus 276 la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~v-vV~TSn~ 330 (587)
...+...+||||. .+|+||+|||||. ||+.....|-..|... +.| ||++|++
T Consensus 191 mq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHDr 255 (582)
T KOG0062|consen 191 MQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHDR 255 (582)
T ss_pred HHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEeccH
Confidence 3445556889995 7999999999999 9999887776666554 444 4555444
No 395
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.07 E-value=7.5e-10 Score=112.41 Aligned_cols=52 Identities=10% Similarity=0.165 Sum_probs=43.5
Q ss_pred HhhhhhcccC-----------C----CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 279 KFLVDQHADQ-----------R----GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 279 ~l~~~LSgGq-----------~----~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
..+.+||+|+ . .|++++||||++ +|+.....+.++|..+.+.|.++|++||.
T Consensus 151 ~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~ 218 (247)
T cd03275 151 RDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLK 218 (247)
T ss_pred hhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 3457888885 2 389999999999 99999999999999998778777777775
No 396
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.06 E-value=2.2e-10 Score=112.54 Aligned_cols=42 Identities=29% Similarity=0.457 Sum_probs=35.1
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHH-HHHHHHHhCCcEEEEecCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALS-GIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~-~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+|+++++|||+. +|+.....+. .+++.+.+.|.++|++||.
T Consensus 107 ~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~ 150 (200)
T cd03280 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHY 150 (200)
T ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCH
Confidence 5799999999998 9999988775 5788887778877777775
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=4.6e-10 Score=119.16 Aligned_cols=128 Identities=20% Similarity=0.304 Sum_probs=75.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccce----EEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR----QRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k----~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
-..++|+||||.|||||++++.|-+.|. .|. .|++..-|.+.... .+.-..
T Consensus 613 dSRiaIVGPNGVGKSTlLkLL~Gkl~P~-~GE~RKnhrL~iG~FdQh~~E------------------------~L~~Ee 667 (807)
T KOG0066|consen 613 DSRIAIVGPNGVGKSTLLKLLIGKLDPN-DGELRKNHRLRIGWFDQHANE------------------------ALNGEE 667 (807)
T ss_pred cceeEEECCCCccHHHHHHHHhcCCCCC-cchhhccceeeeechhhhhHH------------------------hhcccc
Confidence 3579999999999999999999998763 222 23333323221111 111222
Q ss_pred cHHHHHHH--HHhhhhHHH--HhccHHHHHhHh-hhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 252 KVMEWVAA--EEKYKQEVQ--MKNILPAVADKF-LVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 252 tV~eni~~--~~~~~~~~~--~~~~L~~la~~l-~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
|..|.+.- .+.+..... -...|..-|+.+ +..||||| ..|+||||||||. ||+.+...|...|
T Consensus 668 tp~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAI 747 (807)
T KOG0066|consen 668 TPVEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAI 747 (807)
T ss_pred CHHHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHH
Confidence 33333321 111100000 011122222221 34789997 7999999999998 9999988888888
Q ss_pred HHHHhCCcEEEEecCC
Q 007851 315 SRLLSTGTVLVATSNR 330 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~ 330 (587)
..+ +|.|||++|+-
T Consensus 748 ney--~GgVi~VsHDe 761 (807)
T KOG0066|consen 748 NEY--NGGVIMVSHDE 761 (807)
T ss_pred Hhc--cCcEEEEeccc
Confidence 776 56677777663
No 398
>PRK06835 DNA replication protein DnaC; Validated
Probab=99.05 E-value=1.2e-09 Score=115.58 Aligned_cols=139 Identities=19% Similarity=0.278 Sum_probs=95.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
+++++|+|++|+|||+|+.+++..+-. .+..|.|... .++...+...+..
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~---~g~~V~y~t~-~~l~~~l~~~~~~-------------------------- 232 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLD---RGKSVIYRTA-DELIEILREIRFN-------------------------- 232 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHH---CCCeEEEEEH-HHHHHHHHHHHhc--------------------------
Confidence 488999999999999999999986631 2345655442 2222222111100
Q ss_pred HHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 007851 256 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 256 ni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
.........+.+ .+++|||+|++.. .+......|..+|......+..+|+|||..|+
T Consensus 233 -------------~~~~~~~~~~~l--------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~ 291 (329)
T PRK06835 233 -------------NDKELEEVYDLL--------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLE 291 (329)
T ss_pred -------------cchhHHHHHHHh--------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHH
Confidence 000001112333 4789999999986 67778889999999998888889999999999
Q ss_pred ccccCCchhHHhHHHHHhhccceeEEecCCchhhhhhh
Q 007851 334 DLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 334 dLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
+|... +. .+..++|...|.++.+.| .|+|...
T Consensus 292 el~~~-~~----eri~SRL~~~~~~i~~~G-~d~R~~~ 323 (329)
T PRK06835 292 ELLKT-YS----ERISSRLLGNFTLLKFYG-EDIRIKK 323 (329)
T ss_pred HHHHH-Hh----HHHHHHHHcCCEEEEecC-cChhhHH
Confidence 87431 11 235678889999999975 5999754
No 399
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=2.2e-09 Score=112.31 Aligned_cols=145 Identities=23% Similarity=0.329 Sum_probs=97.0
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
...||+||.||||+|+|||+|.++.+.....+ =.||...++ ++ ++- ++.
T Consensus 181 GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~At---FIrvvgSEl---Vq----KYi---GEG------------------ 229 (406)
T COG1222 181 GIDPPKGVLLYGPPGTGKTLLAKAVANQTDAT---FIRVVGSEL---VQ----KYI---GEG------------------ 229 (406)
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCce---EEEeccHHH---HH----HHh---ccc------------------
Confidence 45689999999999999999999999887531 244433222 11 110 100
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-----------CCHHHHHHHHHHHHHH--H
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRL--L 318 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-----------lD~~~a~~L~~Ll~~L--~ 318 (587)
.+ .-.-+..+|++ +.|.|+++||..+ -|-.-+..|++||.+| |
T Consensus 230 ---------aR------lVRelF~lAre---------kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 230 ---------AR------LVRELFELARE---------KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred ---------hH------HHHHHHHHHhh---------cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 00 00113456665 4699999999953 3455566677777776 3
Q ss_pred h-C-CcEEEEecCCC----ccccccCCchhHH------hHHHHHhhccceeEEecCCchhhhhhh
Q 007851 319 S-T-GTVLVATSNRA----PWDLNQDGMQREI------FQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 319 ~-~-G~vvV~TSn~~----PedLy~~gl~r~~------F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
+ . .+-||+++||+ |.-|-++++.|.. +.....+++-|+.-+.++.++||....
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la 350 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLA 350 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHH
Confidence 3 2 35688999985 4556667777743 333567899999999999999999764
No 400
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.99 E-value=1.8e-09 Score=115.69 Aligned_cols=145 Identities=14% Similarity=0.195 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..++.++++||||.||||+.++++|.+.| ..++ .. + -.++|-+|-- ..-++.||
T Consensus 365 ~~gEvigilGpNgiGKTTFvk~LAG~ikP-deg~-~~-------~----------------~~vSyKPQyI-~~~~~gtV 418 (591)
T COG1245 365 YDGEVIGILGPNGIGKTTFVKLLAGVIKP-DEGS-EE-------D----------------LKVSYKPQYI-SPDYDGTV 418 (591)
T ss_pred ecceEEEEECCCCcchHHHHHHHhccccC-CCCC-Cc-------c----------------ceEeecceee-cCCCCCcH
Confidence 45799999999999999999999999986 3332 00 0 1234444431 22366788
Q ss_pred HHHHHHHHhh-hh----HHHHh--ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAEEKY-KQ----EVQMK--NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~~~~-~~----~~~~~--~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+.+...... .. ..+.. -.|..+.++...+||||+ .+++|.+||||.+ ||+..+....+.+
T Consensus 419 ~~~l~~~~~~~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvI 498 (591)
T COG1245 419 EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVI 498 (591)
T ss_pred HHHHHHhhhhhcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHH
Confidence 8877654332 11 11111 235778888999999996 7999999999999 9999999999999
Q ss_pred HHHHhC-Cc-EEEEecCCCccccccCCchhHHhHHHHHhhccceeEEe
Q 007851 315 SRLLST-GT-VLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIP 360 (587)
Q Consensus 315 ~~L~~~-G~-vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~ 360 (587)
+++..+ +. ++|+-|+.. +|+.+.++.-|+.
T Consensus 499 RR~~e~~~kta~vVdHDi~----------------~~dyvsDr~ivF~ 530 (591)
T COG1245 499 RRFIENNEKTALVVDHDIY----------------MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHhhcCceEEEEeccee----------------hhhhhhceEEEEe
Confidence 999875 44 455555432 3666766666664
No 401
>PRK06921 hypothetical protein; Provisional
Probab=98.93 E-value=1.2e-08 Score=104.99 Aligned_cols=136 Identities=13% Similarity=0.178 Sum_probs=84.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.+.+++|+|++|+|||+|+.+|+..+.. ..+..+.|-... +....+....
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~--~~g~~v~y~~~~-~l~~~l~~~~--------------------------- 165 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMR--KKGVPVLYFPFV-EGFGDLKDDF--------------------------- 165 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhh--hcCceEEEEEHH-HHHHHHHHHH---------------------------
Confidence 3689999999999999999999987642 112344443321 1111110000
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-------CCHHHHHHHHHHHHHHHhCCcEEEEe
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-------VDVFAIVALSGIVSRLLSTGTVLVAT 327 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-------lD~~~a~~L~~Ll~~L~~~G~vvV~T 327 (587)
.......+.+ .+++|||+||++. .+......|..++......+..+|+|
T Consensus 166 ----------------~~~~~~~~~~--------~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIit 221 (266)
T PRK06921 166 ----------------DLLEAKLNRM--------KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILIS 221 (266)
T ss_pred ----------------HHHHHHHHHh--------cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 0011122233 4789999999943 34445667899999988877888999
Q ss_pred cCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhhhh
Q 007851 328 SNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 369 (587)
Q Consensus 328 Sn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~ 369 (587)
||..|++|..- .....-..++.+ ++.++.+.++ .||.
T Consensus 222 sn~~~~el~~~--~~~l~sRi~~r~--~~~~i~~~g~-s~r~ 258 (266)
T PRK06921 222 SELTIDELLDI--DEALGSRIVEMC--KDYLVIIKGD-SFEL 258 (266)
T ss_pred CCCCHHHHhhh--hhHHHHHHHHhc--cCeEEEecCc-cccc
Confidence 99999998763 333333334433 3458888764 4654
No 402
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.93 E-value=8.4e-09 Score=105.51 Aligned_cols=143 Identities=19% Similarity=0.210 Sum_probs=99.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.+++++|+||+|+|||+|+-+|+..+- ..+.+|.|... .++...+......
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~---~~g~sv~f~~~-~el~~~Lk~~~~~------------------------- 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL---KAGISVLFITA-PDLLSKLKAAFDE------------------------- 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH---HcCCeEEEEEH-HHHHHHHHHHHhc-------------------------
Confidence 579999999999999999999987663 23456666543 1222222111100
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
...-..+.+.+ .+++||++||+.. .+...+..+..++......... ++|||.++
T Consensus 155 ---------------~~~~~~l~~~l--------~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~~~~~-~~tsN~~~ 210 (254)
T COG1484 155 ---------------GRLEEKLLREL--------KKVDLLIIDDIGYEPFSQEEADLLFQLISRRYESRSL-IITSNLSF 210 (254)
T ss_pred ---------------CchHHHHHHHh--------hcCCEEEEecccCccCCHHHHHHHHHHHHHHHhhccc-eeecCCCh
Confidence 00012233334 4789999999998 8888888889999888877656 99999999
Q ss_pred cccccCCchhHHhHHHHHhhccceeEEecCCchhhhhhh
Q 007851 333 WDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 333 edLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
++|..-.-....-...+++|.++|+++.+.++ +||...
T Consensus 211 ~~~~~~~~~~~~~e~~~dRi~~~~~~~~~~g~-s~rl~~ 248 (254)
T COG1484 211 GEWDELFGDDALTEALLDRILHHSHVIVIKGE-SYRLNV 248 (254)
T ss_pred HHHHhhccCchhHHHHHHHHHhcceeeEecch-Hhhhhc
Confidence 88776433333445678999999999998766 799864
No 403
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.93 E-value=1.9e-09 Score=107.37 Aligned_cols=41 Identities=15% Similarity=0.183 Sum_probs=34.0
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhC-C-cE-EEEecC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLST-G-TV-LVATSN 329 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~-G-~v-vV~TSn 329 (587)
.+|++|++|||+. +|+..+..+.+++..+.++ | .+ |++||+
T Consensus 147 ~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~ 191 (213)
T cd03277 147 TRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPK 191 (213)
T ss_pred cCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchh
Confidence 3799999999998 9999999999999998776 5 34 555544
No 404
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=98.93 E-value=1.9e-09 Score=106.09 Aligned_cols=43 Identities=16% Similarity=0.224 Sum_probs=34.5
Q ss_pred CCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVAL-SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+++++|||+. +|+.....+ ..+++.+.+.|.++|++||..
T Consensus 107 ~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~~~~~vi~~tH~~ 151 (202)
T cd03243 107 TPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLEKGCRTLFATHFH 151 (202)
T ss_pred cCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChH
Confidence 4799999999998 999877655 567788877788777777753
No 405
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.90 E-value=1.4e-08 Score=103.18 Aligned_cols=138 Identities=14% Similarity=0.202 Sum_probs=90.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHH
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEW 256 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~en 256 (587)
.+++|+|++|+|||+|+.+++..+.. .+..+.|-.. .++...+......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~---~g~~v~~it~-~~l~~~l~~~~~~--------------------------- 148 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLL---RGKSVLIITV-ADIMSAMKDTFSN--------------------------- 148 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHh---cCCeEEEEEH-HHHHHHHHHHHhh---------------------------
Confidence 58999999999999999999987642 2234444332 2222111110000
Q ss_pred HHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccc
Q 007851 257 VAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 257 i~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
.......+.+.+ .+++|||+||+.. .+......|..++.........+|+|||..+++
T Consensus 149 ------------~~~~~~~~l~~l--------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~ 208 (244)
T PRK07952 149 ------------SETSEEQLLNDL--------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEE 208 (244)
T ss_pred ------------ccccHHHHHHHh--------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHH
Confidence 000112233333 4689999999987 344455688889988877778889999999998
Q ss_pred cccCCchhHHhHHHHHhhc-cceeEEecCCchhhhhhh
Q 007851 335 LNQDGMQREIFQKLVAKLE-KHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 335 Ly~~gl~r~~F~p~I~~L~-~~~~Vv~l~~~~DyR~~~ 371 (587)
|... +. -..+++|. +++.+|.++++ +||...
T Consensus 209 l~~~-~g----~ri~sRl~~~~~~~i~f~~~-s~R~~~ 240 (244)
T PRK07952 209 MTKL-LG----ERVMDRMRLGNSLWVIFNWD-SYRSRV 240 (244)
T ss_pred HHHH-hC----hHHHHHHHHCCceEEEeeCC-cccccc
Confidence 7642 11 23568885 78999999965 899753
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.89 E-value=8.5e-09 Score=127.38 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=60.1
Q ss_pred CCCCcHHHHHHHHHhhh-----hHHH----H----hccHHHH-HhHhhhhhcccC--------------CCccEEEEeCC
Q 007851 248 PFDSKVMEWVAAEEKYK-----QEVQ----M----KNILPAV-ADKFLVDQHADQ--------------RGASILCFDEI 299 (587)
Q Consensus 248 ~~~~tV~eni~~~~~~~-----~~~~----~----~~~L~~l-a~~l~~~LSgGq--------------~~p~LL~LDEP 299 (587)
+...||.|++.+..... .... . ...+..+ +++.+.+||||| .+|+||+||||
T Consensus 760 ~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEP 839 (1809)
T PRK00635 760 YKGKNIADILEMTAYEAEKFFLDEPSIHEKIHALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEP 839 (1809)
T ss_pred cCCCCHHHHHHcCHHHHHHcccChHHHHHHHHHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCC
Confidence 34578899987654311 0111 1 0112233 566778999996 28999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 300 QT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 300 t~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++ +|+.+...|.++|..+.+.|.+||+++|..
T Consensus 840 TsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl 872 (1809)
T PRK00635 840 TTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNM 872 (1809)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 99 999999999999999998888776666654
No 407
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=98.88 E-value=1.1e-08 Score=99.12 Aligned_cols=134 Identities=16% Similarity=0.138 Sum_probs=73.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHH
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWV 257 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni 257 (587)
..+|+||||+|||+++++|+-.+-+......+- ..+ .++ +.. .+.+.....+.+.|......++.....+.+
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~---~~~-~~~---~~~-~~~~~~~~~v~~~f~~~~~~~~~~~~~~~L 95 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRG---SLL-FLA---GGG-VKAGINSASVEITFDKSYFLVLQGKVEQIL 95 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCc---chh-hhc---ccc-cCCCCceEEEEEEEECceEEecCCcCcccC
Confidence 899999999999999999976543211110010 000 000 010 011111223444455433334433222222
Q ss_pred HHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 258 AAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 258 ~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+.. . ...++..+... ...+|+++|+|||+. +|+.....+.+++..+.+.|.++|++||.+
T Consensus 96 S~Ge~------~---r~~Laral~~~---~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~ 158 (178)
T cd03239 96 SGGEK------S---LSALALIFALQ---EIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKK 158 (178)
T ss_pred CHHHH------H---HHHHHHHHHHh---cCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 11110 0 01223322100 014799999999998 999999999999999987777777777763
No 408
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.87 E-value=7.5e-09 Score=113.70 Aligned_cols=155 Identities=14% Similarity=0.086 Sum_probs=106.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+.|+.+.|+||||||||.||+.++|+-+. .+|.+..+.-.. -+.+-|++| .+.+...|
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~---~~G~l~k~~~~~----------------~~~lfflPQ--rPYmt~GT 516 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPS---TGGKLTKPTDGG----------------PKDLFFLPQ--RPYMTLGT 516 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhccccc---CCCeEEecccCC----------------CCceEEecC--CCCccccc
Confidence 346899999999999999999999999873 344554432100 022445565 45666678
Q ss_pred HHHHHHHHHhhhh-----H--HHHhc-----cHH-----------HHHhHhhhhhcccC-----------CCccEEEEeC
Q 007851 253 VMEWVAAEEKYKQ-----E--VQMKN-----ILP-----------AVADKFLVDQHADQ-----------RGASILCFDE 298 (587)
Q Consensus 253 V~eni~~~~~~~~-----~--~~~~~-----~L~-----------~la~~l~~~LSgGq-----------~~p~LL~LDE 298 (587)
.++-|.++..... . ..... .+. .+-..+...||+|+ ++|++-+|||
T Consensus 517 LRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE 596 (659)
T KOG0060|consen 517 LRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDE 596 (659)
T ss_pred hhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeec
Confidence 8888888733211 0 00000 111 12334455799996 7999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhhhh
Q 007851 299 IQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 369 (587)
Q Consensus 299 Pt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~ 369 (587)
-|+ +|....+.+.+.+++ .|+|.|..+||. .+-+.|-.++.++|+-.||.
T Consensus 597 ~TSAv~~dvE~~~Yr~~r~---~giT~iSVgHRk------------------SL~kfHd~~L~~~g~g~w~~ 647 (659)
T KOG0060|consen 597 CTSAVTEDVEGALYRKCRE---MGITFISVGHRK------------------SLWKFHDYVLRMDGRGSWRF 647 (659)
T ss_pred hhhhccHHHHHHHHHHHHH---cCCeEEEeccHH------------------HHHhhhhEEEEecCCCceEE
Confidence 998 888777777776654 589999999984 24467888999999877775
No 409
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.86 E-value=1.1e-08 Score=111.81 Aligned_cols=55 Identities=25% Similarity=0.302 Sum_probs=45.2
Q ss_pred HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 274 PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 274 ~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
...+++...+||||+ .+|++|+|||||. ||+.....|-..|... +++ ++|++||.
T Consensus 212 ~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~-d~~-~lVi~sh~ 278 (614)
T KOG0927|consen 212 SEMQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKY-DRI-ILVIVSHS 278 (614)
T ss_pred HhHHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhc-cCc-eEEEEecc
Confidence 456778888999996 7999999999999 9999998888877765 233 77788885
No 410
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.84 E-value=2.1e-08 Score=100.27 Aligned_cols=106 Identities=26% Similarity=0.420 Sum_probs=72.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEe---hhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH---EAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~---~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..+|||||+|+|||+||.+++..+....++ .+|.+- .|+..+...+ .
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-~~v~y~~~~~f~~~~~~~~---~-------------------------- 84 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPG-KRVVYLSAEEFIREFADAL---R-------------------------- 84 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTT-S-EEEEEHHHHHHHHHHHH---H--------------------------
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhcccc-ccceeecHHHHHHHHHHHH---H--------------------------
Confidence 469999999999999999998765310112 234332 3332221111 0
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
...+..+.+.+ ...++||+|.++. -.......+..++..+.+.|..+|+||+.+
T Consensus 85 ----------------~~~~~~~~~~~--------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~ 140 (219)
T PF00308_consen 85 ----------------DGEIEEFKDRL--------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRP 140 (219)
T ss_dssp ----------------TTSHHHHHHHH--------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-
T ss_pred ----------------cccchhhhhhh--------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCC
Confidence 11234455555 5789999999998 334568899999999999999999999999
Q ss_pred ccccc
Q 007851 332 PWDLN 336 (587)
Q Consensus 332 PedLy 336 (587)
|.+|-
T Consensus 141 P~~l~ 145 (219)
T PF00308_consen 141 PSELS 145 (219)
T ss_dssp TTTTT
T ss_pred Ccccc
Confidence 99864
No 411
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.84 E-value=1.1e-08 Score=100.23 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=97.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc-cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCC-CCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV-KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLP-FDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~-~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~-~~~ 251 (587)
..|+.-+|+|.+|||||.+.++|+|..+..- -..-|..|++. ++.+...+.+ +.-..+.++++||++...+ +..
T Consensus 31 nEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i--dLL~L~Pr~R--Rk~ig~~isMIFQeP~sCLDPS~ 106 (330)
T COG4170 31 NEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI--DLLRLSPRER--RKLVGHNVSMIFQEPQSCLDPSE 106 (330)
T ss_pred ccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccc--hhhcCChHHh--hhhhccchhhhhcCchhhcChHH
Confidence 4688999999999999999999999876210 11234555542 2211111111 1223456889999865433 333
Q ss_pred cHHH----HHHHH---Hh---hhh--HHHH-----hccH---HHHHhHhhhhhcccC-----------CCccEEEEeCCC
Q 007851 252 KVME----WVAAE---EK---YKQ--EVQM-----KNIL---PAVADKFLVDQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 252 tV~e----ni~~~---~~---~~~--~~~~-----~~~L---~~la~~l~~~LSgGq-----------~~p~LL~LDEPt 300 (587)
+|.. ||-+. .+ ..+ +... ...+ .++...++.+|..|+ .+|++|+.|||+
T Consensus 107 ~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPT 186 (330)
T COG4170 107 RVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPT 186 (330)
T ss_pred HHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCC
Confidence 3332 22110 00 000 0000 0111 345667777888885 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
. +++..+..+++|+..+.+. |++|+.+||..
T Consensus 187 N~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl 219 (330)
T COG4170 187 NSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL 219 (330)
T ss_pred cccCccHHHHHHHHHHHhhccCCceEEEEcccH
Confidence 8 9999999999999999875 78999999963
No 412
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=5.1e-09 Score=113.70 Aligned_cols=54 Identities=19% Similarity=0.292 Sum_probs=42.7
Q ss_pred HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 275 AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 275 ~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+++...+..||||| .+|.+|+|||||. ||...-..|.+-|+.+ +|.||++||+.
T Consensus 474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~ 539 (582)
T KOG0062|consen 474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDE 539 (582)
T ss_pred hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcH
Confidence 45666677899998 7999999999999 9998876666666554 57788888774
No 413
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.82 E-value=1.1e-08 Score=105.36 Aligned_cols=117 Identities=11% Similarity=0.161 Sum_probs=68.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHH
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEW 256 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~en 256 (587)
+.++|+||+|||||||+++++|.+++ +.+.+.+.+....+......+. ..+++++|. .....++|.+|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~-------~~~~~~~q~--~~~~r~~v~~~ 179 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIA-------GCVNGVPQH--DVGIRTDVLDG 179 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHH-------HHhcccccc--ccccccccccc
Confidence 78999999999999999999999985 3455666552111101011111 123455553 23334555554
Q ss_pred HHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 257 VAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 257 i~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.... ..+..++.. .+|++|++|||.. ...+..+++.+ +.|.++|+|+|.
T Consensus 180 ~~k~----------~~~~~~i~~---------~~P~villDE~~~-----~e~~~~l~~~~-~~G~~vI~ttH~ 228 (270)
T TIGR02858 180 CPKA----------EGMMMLIRS---------MSPDVIVVDEIGR-----EEDVEALLEAL-HAGVSIIATAHG 228 (270)
T ss_pred chHH----------HHHHHHHHh---------CCCCEEEEeCCCc-----HHHHHHHHHHH-hCCCEEEEEech
Confidence 2111 112222221 4799999999974 22345555555 368888888885
No 414
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=98.82 E-value=1.5e-08 Score=119.96 Aligned_cols=81 Identities=17% Similarity=0.151 Sum_probs=57.7
Q ss_pred CCcHHHHHHHHHhhhhHHHHhc-----cHHH-HHhHhhhhhcccC-----------CCc---cEEEEeCCCC-CCHHHHH
Q 007851 250 DSKVMEWVAAEEKYKQEVQMKN-----ILPA-VADKFLVDQHADQ-----------RGA---SILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~~~~~~~-----~L~~-la~~l~~~LSgGq-----------~~p---~LL~LDEPt~-lD~~~a~ 308 (587)
++|+.|++.+............ .|.. ..++.+.+||||+ .+| +|++||||++ +|+.+..
T Consensus 791 ~ltv~E~l~~f~~~~~i~~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~ 870 (943)
T PRK00349 791 DMTVEEALEFFEAIPKIARKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIR 870 (943)
T ss_pred cCcHHHHHHHHHhchhhhHHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHH
Confidence 4788888877543222111111 1211 2455677899996 567 9999999999 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.|.++|..+.+.|.+||+++|.
T Consensus 871 ~L~~~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 871 KLLEVLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred HHHHHHHHHHhCCCEEEEEecC
Confidence 9999999998888877766665
No 415
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.81 E-value=1.2e-08 Score=107.78 Aligned_cols=143 Identities=15% Similarity=0.111 Sum_probs=80.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC--
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS-- 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~-- 251 (587)
..|+.|.|+|.|||||||+++++.|+..|. +|+|..++-..+. +.+.+. ++.++-||.++.. +..+
T Consensus 347 krGelvFliG~NGsGKST~~~LLtGL~~Pq---sG~I~ldg~pV~~-e~ledY-------R~LfSavFsDyhL-F~~ll~ 414 (546)
T COG4615 347 KRGELVFLIGGNGSGKSTLAMLLTGLYQPQ---SGEILLDGKPVSA-EQLEDY-------RKLFSAVFSDYHL-FDQLLG 414 (546)
T ss_pred ecCcEEEEECCCCCcHHHHHHHHhcccCCC---CCceeECCccCCC-CCHHHH-------HHHHHHHhhhHhh-hHhhhC
Confidence 468999999999999999999999999863 4556556532211 111111 1233344444211 1000
Q ss_pred ----cHHHHHHHHHhhhhHHHHhccHHHHHhHh--hhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH-
Q 007851 252 ----KVMEWVAAEEKYKQEVQMKNILPAVADKF--LVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG- 312 (587)
Q Consensus 252 ----tV~eni~~~~~~~~~~~~~~~L~~la~~l--~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~- 312 (587)
--.+++...+..-.... ...+.+.- ...||.|| .+-+||+|||--+ -||+-+..+..
T Consensus 415 ~e~~as~q~i~~~LqrLel~~----ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~ 490 (546)
T COG4615 415 PEGKASPQLIEKWLQRLELAH----KTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQV 490 (546)
T ss_pred CccCCChHHHHHHHHHHHHhh----hhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHH
Confidence 11122222211100000 00000000 12466665 5778999999999 99998877754
Q ss_pred HHHHHHhCCcEEEEecCCCc
Q 007851 313 IVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 313 Ll~~L~~~G~vvV~TSn~~P 332 (587)
++-.|.+.|+||++.||..+
T Consensus 491 lLp~LK~qGKTI~aIsHDd~ 510 (546)
T COG4615 491 LLPLLKEQGKTIFAISHDDH 510 (546)
T ss_pred HhHHHHHhCCeEEEEecCch
Confidence 45556667999888888643
No 416
>PRK08727 hypothetical protein; Validated
Probab=98.80 E-value=3.2e-08 Score=99.80 Aligned_cols=48 Identities=25% Similarity=0.313 Sum_probs=40.7
Q ss_pred CCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccc
Q 007851 289 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 336 (587)
Q Consensus 289 ~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy 336 (587)
.++++||+||++. .+..+...+.+++..+.+.|..||+|+|.+|.+|.
T Consensus 92 ~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~ 141 (233)
T PRK08727 92 EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLA 141 (233)
T ss_pred hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhh
Confidence 3679999999997 46677788999999998888889999999988764
No 417
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.78 E-value=1.7e-08 Score=119.23 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=46.1
Q ss_pred HhHhhhhhcccC-----------C---CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 277 ADKFLVDQHADQ-----------R---GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~---~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.++.+.+||||+ . +|+|++||||++ +|+.+...|.++|.++.+.|.+||+++|.
T Consensus 822 l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~ 890 (924)
T TIGR00630 822 LGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHN 890 (924)
T ss_pred hcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 455667899996 2 589999999999 99999999999999998888877777665
No 418
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.76 E-value=4e-08 Score=99.25 Aligned_cols=117 Identities=21% Similarity=0.357 Sum_probs=78.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
+..++|+||+|||||+|+.+++..+.. .+.++.|..+.. .. .
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~---~~~~v~y~~~~~-~~----~------------------------------ 86 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELSQ---RGRAVGYVPLDK-RA----W------------------------------ 86 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEEHHH-Hh----h------------------------------
Confidence 458999999999999999999875531 123555544311 00 0
Q ss_pred HHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 007851 256 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGT-VLVATSNRAP 332 (587)
Q Consensus 256 ni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~-vvV~TSn~~P 332 (587)
....+.+.+ .+.++||+||.+. -+......|..++..+.+.|. .+|+|++.+|
T Consensus 87 ----------------~~~~~~~~~--------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p 142 (235)
T PRK08084 87 ----------------FVPEVLEGM--------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPP 142 (235)
T ss_pred ----------------hhHHHHHHh--------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCCh
Confidence 001112222 2358999999987 577888899999999998875 7888999888
Q ss_pred cccccCCchhHHhHHHHHhhccce---eEEecCCc
Q 007851 333 WDLNQDGMQREIFQKLVAKLEKHC---EIIPIGSE 364 (587)
Q Consensus 333 edLy~~gl~r~~F~p~I~~L~~~~---~Vv~l~~~ 364 (587)
.+|..- .+.|..|| .++.+..+
T Consensus 143 ~~l~~~----------~~~L~SRl~~g~~~~l~~~ 167 (235)
T PRK08084 143 RQLNLG----------LPDLASRLDWGQIYKLQPL 167 (235)
T ss_pred HHcCcc----------cHHHHHHHhCCceeeecCC
Confidence 775421 23344455 67777665
No 419
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.75 E-value=1.2e-08 Score=110.80 Aligned_cols=157 Identities=25% Similarity=0.413 Sum_probs=95.2
Q ss_pred hhhhhhhhhhccccCCCCCCCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhh
Q 007851 153 VSYLNRERKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVA 232 (587)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~ 232 (587)
+++|....+..++.|+ -|+||+|+||+|+|||+|.++++|....+ .|+--..+..+ ..
T Consensus 320 VefLkdP~kftrLGGK------LPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~sGSEFdE----m~----- 377 (752)
T KOG0734|consen 320 VEFLKDPTKFTRLGGK------LPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYASGSEFDE----MF----- 377 (752)
T ss_pred HHHhcCcHHhhhccCc------CCCceEEeCCCCCchhHHHHHhhcccCCC-------eEeccccchhh----hh-----
Confidence 4555555555556553 57999999999999999999999987632 11110011000 00
Q ss_pred cccceeeeeccCCCCCCCCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-------CCH-
Q 007851 233 EKSLRSSISGWITNLPFDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-------VDV- 304 (587)
Q Consensus 233 ~~~~ig~v~q~~~~~~~~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-------lD~- 304 (587)
+| + + ...+.+ |...|+. .-|+||++||..+ -|.
T Consensus 378 ----VG---v-----------------G-----ArRVRd-LF~aAk~---------~APcIIFIDEiDavG~kR~~~~~~ 418 (752)
T KOG0734|consen 378 ----VG---V-----------------G-----ARRVRD-LFAAAKA---------RAPCIIFIDEIDAVGGKRNPSDQH 418 (752)
T ss_pred ----hc---c-----------------c-----HHHHHH-HHHHHHh---------cCCeEEEEechhhhcccCCccHHH
Confidence 00 0 0 000111 2223443 3599999999975 333
Q ss_pred HHHHHHHHHHHHH--H--hCCcEEEEecCCCcccccc-----CCchhHHhHH------HHHhhccceeEEecCCchhhhh
Q 007851 305 FAIVALSGIVSRL--L--STGTVLVATSNRAPWDLNQ-----DGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRR 369 (587)
Q Consensus 305 ~~a~~L~~Ll~~L--~--~~G~vvV~TSn~~PedLy~-----~gl~r~~F~p------~I~~L~~~~~Vv~l~~~~DyR~ 369 (587)
-..+-|-+||.+| | .+|++||.++|+ |++|.+ ++++|..-+| ..++|+.+..-+-++.++|--.
T Consensus 419 y~kqTlNQLLvEmDGF~qNeGiIvigATNf-pe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~i 497 (752)
T KOG0734|consen 419 YAKQTLNQLLVEMDGFKQNEGIIVIGATNF-PEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKI 497 (752)
T ss_pred HHHHHHHHHHHHhcCcCcCCceEEEeccCC-hhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhH
Confidence 2334556666665 2 247888888887 677776 4444443333 4578888888888888888876
Q ss_pred hh
Q 007851 370 LI 371 (587)
Q Consensus 370 ~~ 371 (587)
..
T Consensus 498 iA 499 (752)
T KOG0734|consen 498 IA 499 (752)
T ss_pred hc
Confidence 54
No 420
>PRK06893 DNA replication initiation factor; Validated
Probab=98.73 E-value=3.2e-08 Score=99.56 Aligned_cols=48 Identities=19% Similarity=0.421 Sum_probs=39.4
Q ss_pred CCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccccc
Q 007851 289 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWDLN 336 (587)
Q Consensus 289 ~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~-vvV~TSn~~PedLy 336 (587)
.++++||+||++. -+......|..+|..+.+.|. +||+|+|..|.+|.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~ 140 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALS 140 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHcc
Confidence 3679999999997 466677789999999988775 56889999988765
No 421
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.72 E-value=8.5e-08 Score=105.53 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=37.5
Q ss_pred CccEEEEeCCCC-CCH-HHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 290 GASILCFDEIQT-VDV-FAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 290 ~p~LL~LDEPt~-lD~-~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
++++||+||++. .+. .....+..+|..+.+.|..+|+|++..|.++
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l 241 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHH
Confidence 589999999997 443 3456788999999998888888998888764
No 422
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=98.72 E-value=4.2e-08 Score=97.99 Aligned_cols=118 Identities=14% Similarity=0.031 Sum_probs=65.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHH
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEW 256 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~en 256 (587)
+.+.|.||||+||||||+++++..-.. ..+..+ . .....++++. ..+..+++.++
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~~~l~-~~g~~v-------p-------------~~~~~i~~~~----~i~~~~~~~~~ 85 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALIALLA-QIGSFV-------P-------------ASKAEIGVVD----RIFTRIGASDD 85 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHh-ccCCee-------c-------------cccceeccee----eEeccCCchhh
Confidence 789999999999999999997643100 000000 0 0001223322 23456777777
Q ss_pred HHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCC---CC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 257 VAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEI---QT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 257 i~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEP---t~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+...... ....+..+.... .+|.+++|||| +. +|... ....+++.+.+. +.++|++||..
T Consensus 86 ls~g~s~f~~--e~~~l~~~l~~~--------~~~~llllDEp~~gt~~lD~~~--~~~~il~~l~~~~~~~vi~~TH~~ 153 (216)
T cd03284 86 LAGGRSTFMV--EMVETANILNNA--------TERSLVLLDEIGRGTSTYDGLS--IAWAIVEYLHEKIGAKTLFATHYH 153 (216)
T ss_pred hccCcchHHH--HHHHHHHHHHhC--------CCCeEEEEecCCCCCChHHHHH--HHHHHHHHHHhccCCcEEEEeCcH
Confidence 7655321100 001122222221 57999999999 55 66533 345677777776 77666677753
No 423
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.71 E-value=1.3e-08 Score=100.71 Aligned_cols=43 Identities=16% Similarity=0.226 Sum_probs=33.9
Q ss_pred CCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVAL-SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+++++|||+. +|+.+...+ ..+++.+.+.|.++|++||..
T Consensus 107 ~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~ 151 (204)
T cd03282 107 DGDSLVLIDELGRGTSSADGFAISLAILECLIKKESTVFFATHFR 151 (204)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChH
Confidence 5789999999998 988775554 567888888888777777753
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.70 E-value=6.7e-08 Score=96.29 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=31.8
Q ss_pred CCccEEEEeCCCC-CCHHHH-HHHHHHHHHHHhCC---cEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAI-VALSGIVSRLLSTG---TVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a-~~L~~Ll~~L~~~G---~vvV~TSn~~ 331 (587)
.++.+++||||+. +|+.+. ..+..+++.+.+.| .++|++||..
T Consensus 107 ~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 107 TRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred CCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 5789999999998 998764 45567888887653 3566666653
No 425
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=4.9e-08 Score=97.90 Aligned_cols=118 Identities=25% Similarity=0.361 Sum_probs=75.3
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
...||+||.||||+|||||||.++.+..... .-+||...+|.+ +.-+ +.. .
T Consensus 185 gidpprgvllygppg~gktml~kava~~t~a---~firvvgsefvq-------kylg---egp----------------r 235 (408)
T KOG0727|consen 185 GIDPPRGVLLYGPPGTGKTMLAKAVANHTTA---AFIRVVGSEFVQ-------KYLG---EGP----------------R 235 (408)
T ss_pred CCCCCcceEEeCCCCCcHHHHHHHHhhccch---heeeeccHHHHH-------HHhc---cCc----------------H
Confidence 4568999999999999999999999987653 336665555422 1110 000 0
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-----------CCHHHHHHHHHHHHHH--H
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRL--L 318 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-----------lD~~~a~~L~~Ll~~L--~ 318 (587)
.| .+ +..+|++ ..|.|+++||..+ -|-.-+.+|.+|+..+ |
T Consensus 236 mv----------------rd-vfrlake---------napsiifideidaiatkrfdaqtgadrevqril~ellnqmdgf 289 (408)
T KOG0727|consen 236 MV----------------RD-VFRLAKE---------NAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGF 289 (408)
T ss_pred HH----------------HH-HHHHHhc---------cCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCc
Confidence 00 11 2334544 4699999999843 4666677888888777 3
Q ss_pred hC--CcEEEEecCCC----ccccccCCchhHH
Q 007851 319 ST--GTVLVATSNRA----PWDLNQDGMQREI 344 (587)
Q Consensus 319 ~~--G~vvV~TSn~~----PedLy~~gl~r~~ 344 (587)
++ ++-||+++|+. |.-|-++.|.|..
T Consensus 290 dq~~nvkvimatnradtldpallrpgrldrki 321 (408)
T KOG0727|consen 290 DQTTNVKVIMATNRADTLDPALLRPGRLDRKI 321 (408)
T ss_pred CcccceEEEEecCcccccCHhhcCCccccccc
Confidence 33 34578888876 4445556666543
No 426
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=3.6e-08 Score=108.72 Aligned_cols=144 Identities=21% Similarity=0.332 Sum_probs=84.0
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
...||+||+|+||+|||||+|.++|+|.+.-+. ..| .. -++. +-+...
T Consensus 219 Gv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf---~~i--sA--peiv-----------------SGvSGE-------- 266 (802)
T KOG0733|consen 219 GVRPPRGVLLHGPPGCGKTSLANAIAGELGVPF---LSI--SA--PEIV-----------------SGVSGE-------- 266 (802)
T ss_pred CCCCCCceeeeCCCCccHHHHHHHHhhhcCCce---Eee--cc--hhhh-----------------cccCcc--------
Confidence 346799999999999999999999999886321 111 10 0110 000000
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCC----CHHHHH----HHHHHHHHH---Hh-
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV----DVFAIV----ALSGIVSRL---LS- 319 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~l----D~~~a~----~L~~Ll~~L---~~- 319 (587)
-+..+.++-+.-.. .-|+|+++||..+. +.+... ++.+|+..+ ..
T Consensus 267 -----------------SEkkiRelF~~A~~------~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~ 323 (802)
T KOG0733|consen 267 -----------------SEKKIRELFDQAKS------NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNE 323 (802)
T ss_pred -----------------cHHHHHHHHHHHhc------cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccc
Confidence 01112222222111 36999999999873 333333 333333333 11
Q ss_pred ----CCcEEEEecCCCcccccc-----CCchhHHhH------HHHHhhccceeEEecCCchhhhhhh
Q 007851 320 ----TGTVLVATSNRAPWDLNQ-----DGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 320 ----~G~vvV~TSn~~PedLy~-----~gl~r~~F~------p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
.+++||.++|| |+.|.+ +++.|+.-+ ..-++|...|+-+.+++..||++..
T Consensus 324 ~~~g~~VlVIgATnR-PDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA 389 (802)
T KOG0733|consen 324 KTKGDPVLVIGATNR-PDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLA 389 (802)
T ss_pred ccCCCCeEEEecCCC-CcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHH
Confidence 23567788887 566554 334443221 1247788899999999999999875
No 427
>PRK05642 DNA replication initiation factor; Validated
Probab=98.68 E-value=8.7e-08 Score=96.79 Aligned_cols=47 Identities=21% Similarity=0.374 Sum_probs=39.9
Q ss_pred CccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccc
Q 007851 290 GASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 336 (587)
Q Consensus 290 ~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy 336 (587)
+.++||+|+.+. -+......|..++..+.+.|..+|+|++.+|.++.
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~ 145 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELP 145 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcC
Confidence 578999999997 45666788999999999989999999999887654
No 428
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=98.68 E-value=2e-07 Score=88.66 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=36.3
Q ss_pred CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 290 GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 290 ~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+++|+|||+. +|+.+...+...+.++..+|.++|++||..
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~ 141 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLP 141 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCH
Confidence 789999999998 999999999999988876677777777764
No 429
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.68 E-value=9.1e-08 Score=107.96 Aligned_cols=47 Identities=26% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 289 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 289 ~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
.+++|||+||++. .+......|+.+|..+.+.|..||+|||..|.+|
T Consensus 376 ~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 376 REMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred hcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 4689999999997 4556678899999999998888889999999886
No 430
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.66 E-value=1.5e-07 Score=103.92 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=41.3
Q ss_pred CCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 289 RGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 289 ~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
.++++||+||++. .+......|..+|..+.+.|..||+|||.+|+++
T Consensus 205 ~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l 253 (450)
T PRK14087 205 CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELL 253 (450)
T ss_pred ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHH
Confidence 4689999999987 4467788999999999999989999999999875
No 431
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=98.66 E-value=2.5e-08 Score=97.01 Aligned_cols=43 Identities=19% Similarity=0.361 Sum_probs=33.1
Q ss_pred CCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhC-CcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVAL-SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+|+++++|||+. +|+.+...+ ..+++.+.++ |.++|++||..
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~ 122 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH 122 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH
Confidence 4799999999998 999876554 6777888774 77666666654
No 432
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.1e-07 Score=105.06 Aligned_cols=144 Identities=21% Similarity=0.315 Sum_probs=92.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|.||+||||+|||||.|.++.+..... --|+..+- + .+..+- ++..+.+
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEag~-----NFisVKGP--E---LlNkYV---GESErAV--------------- 593 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEAGA-----NFISVKGP--E---LLNKYV---GESERAV--------------- 593 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhccC-----ceEeecCH--H---HHHHHh---hhHHHHH---------------
Confidence 356899999999999999999999876542 12333321 1 111111 1000000
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--------CCHHHHHHHHHHHHHHH----hC
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--------VDVFAIVALSGIVSRLL----ST 320 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--------lD~~~a~~L~~Ll~~L~----~~ 320 (587)
..+..-|+. ..|+||+|||+.+ ..-.....+-.||.+|= .+
T Consensus 594 ------------------R~vFqRAR~---------saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~ 646 (802)
T KOG0733|consen 594 ------------------RQVFQRARA---------SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERR 646 (802)
T ss_pred ------------------HHHHHHhhc---------CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccccccc
Confidence 001112322 4699999999975 23345667777777762 35
Q ss_pred CcEEEEecCCC----ccccccCCchhHHhHHH------HHhhcccee--EEecCCchhhhhhh
Q 007851 321 GTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCE--IIPIGSEVDYRRLI 371 (587)
Q Consensus 321 G~vvV~TSn~~----PedLy~~gl~r~~F~p~------I~~L~~~~~--Vv~l~~~~DyR~~~ 371 (587)
|+.||+++||+ |.-|-+++|.+-.|+++ .++|+...+ -.-+++.+|+-...
T Consensus 647 gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia 709 (802)
T KOG0733|consen 647 GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIA 709 (802)
T ss_pred ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHh
Confidence 78999999997 56688899999888875 566766666 66677888877654
No 433
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.65 E-value=1.2e-07 Score=91.64 Aligned_cols=43 Identities=19% Similarity=0.340 Sum_probs=37.3
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+.-|.+||||.+ |.+..++.|...|..|.+.|.-+|+++|.+
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSP 188 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSP 188 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecCh
Confidence 5678999999999 999999999999999999998666666654
No 434
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.62 E-value=3.1e-08 Score=96.89 Aligned_cols=42 Identities=21% Similarity=0.335 Sum_probs=36.3
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
+.-++|+|||.|+ +|+-.++.|.++|++=.+. |.+||.++|.
T Consensus 164 ~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHI 207 (291)
T KOG2355|consen 164 KPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHI 207 (291)
T ss_pred cceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeee
Confidence 4558999999999 9999999999999988764 7888887774
No 435
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.61 E-value=1.1e-07 Score=101.32 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=83.7
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCc-------ccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGI-------VKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT 245 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~-------~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~ 245 (587)
..+|+.+++.|++|+|||||++++.|..... .+|+..+--+. ..++++....
T Consensus 406 ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------------------~~a~iPge~E 464 (593)
T COG2401 406 IKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------------------VSALIPGEYE 464 (593)
T ss_pred ecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc---------------------hhhccCcccc
Confidence 4679999999999999999999999975421 12332221110 0112222222
Q ss_pred CCCCCCcHHHHHHHHHhhhh-HHH--HhccH-H-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHH
Q 007851 246 NLPFDSKVMEWVAAEEKYKQ-EVQ--MKNIL-P-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 246 ~~~~~~tV~eni~~~~~~~~-~~~--~~~~L-~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~ 308 (587)
+.+...|+.+.+.-.....+ ..+ ....+ + -+-++...+||.|| ..|.+++.|||.+ +|..+++
T Consensus 465 p~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~ 544 (593)
T COG2401 465 PEFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV 544 (593)
T ss_pred cccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence 23333455554432111000 000 00011 1 12345567888887 6899999999999 9999999
Q ss_pred HHHHHHHHHHhC-CcEEEEecCCC
Q 007851 309 ALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+.+=|.+|..+ |.++++.+|++
T Consensus 545 rVArkiselaRe~giTlivvThrp 568 (593)
T COG2401 545 RVARKISELAREAGITLIVVTHRP 568 (593)
T ss_pred HHHHHHHHHHHHhCCeEEEEecCH
Confidence 999999999865 77766666653
No 436
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.59 E-value=6.4e-07 Score=90.34 Aligned_cols=43 Identities=19% Similarity=0.333 Sum_probs=35.8
Q ss_pred CCccEEEEeCCCC-C----CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-V----DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-l----D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+++++|||+. + |+.....+.++++.+.+.|.++++||+..
T Consensus 116 ~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~t~~~~ 163 (230)
T PRK08533 116 YEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIILTANPK 163 (230)
T ss_pred cCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEEEeccc
Confidence 4799999999997 4 77777788899998888888888888854
No 437
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.57 E-value=2e-07 Score=102.71 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=40.3
Q ss_pred CCccEEEEeCCCCC--CHHHHHHHHHHHHHHHhCCcEEEEecCCCccccc
Q 007851 289 RGASILCFDEIQTV--DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 336 (587)
Q Consensus 289 ~~p~LL~LDEPt~l--D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy 336 (587)
.++++|++||++.+ .......+..+|..+...|..||+|+|.+|.+|.
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLK 250 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHh
Confidence 46899999999983 4566788999999998888999999999888753
No 438
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.56 E-value=3.2e-07 Score=101.19 Aligned_cols=48 Identities=27% Similarity=0.353 Sum_probs=39.6
Q ss_pred CCccEEEEeCCCCC--CHHHHHHHHHHHHHHHhCCcEEEEecCCCccccc
Q 007851 289 RGASILCFDEIQTV--DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 336 (587)
Q Consensus 289 ~~p~LL~LDEPt~l--D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy 336 (587)
.++++||+||.+.+ .......+..+|..+.+.|..+|+|+|.+|.+|.
T Consensus 210 ~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~ 259 (450)
T PRK00149 210 RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELP 259 (450)
T ss_pred hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHH
Confidence 36899999999973 3445678999999999998888999999988754
No 439
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.52 E-value=4.6e-07 Score=98.59 Aligned_cols=47 Identities=26% Similarity=0.325 Sum_probs=38.7
Q ss_pred CccEEEEeCCCCC--CHHHHHHHHHHHHHHHhCCcEEEEecCCCccccc
Q 007851 290 GASILCFDEIQTV--DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLN 336 (587)
Q Consensus 290 ~p~LL~LDEPt~l--D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy 336 (587)
++++||+||++.+ .......+..+|..+.+.|..+|+|+|.+|.+|.
T Consensus 199 ~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~ 247 (405)
T TIGR00362 199 SVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELP 247 (405)
T ss_pred hCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHh
Confidence 5799999999973 3345677899999998888888999999988754
No 440
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=4e-08 Score=109.47 Aligned_cols=143 Identities=20% Similarity=0.310 Sum_probs=86.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..+|+||.+|||+||||||+.++++.....+ -+...+ -+++ ..+- ++..+.
T Consensus 465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~n-----Flsvkg--pEL~----sk~v--GeSEr~---------------- 515 (693)
T KOG0730|consen 465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMN-----FLSVKG--PELF----SKYV--GESERA---------------- 515 (693)
T ss_pred CCCCceEEEECCCCcchHHHHHHHhhhhcCC-----eeeccC--HHHH----HHhc--CchHHH----------------
Confidence 3578999999999999999999999866421 111111 1121 1110 000000
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCC--------HHHHHHHHHHHHHHH----hC
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVD--------VFAIVALSGIVSRLL----ST 320 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD--------~~~a~~L~~Ll~~L~----~~ 320 (587)
. ..+...|+.. .|.||+|||..++- -+.-..|..||+++- .+
T Consensus 516 ----------------i-r~iF~kAR~~---------aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k 569 (693)
T KOG0730|consen 516 ----------------I-REVFRKARQV---------APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK 569 (693)
T ss_pred ----------------H-HHHHHHHhhc---------CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC
Confidence 0 0122334443 58999999997521 123456777777763 23
Q ss_pred CcEEEEecCCCccccc-----cCCchhHHhH------HHHHhhccceeEEecCCchhhhhhh
Q 007851 321 GTVLVATSNRAPWDLN-----QDGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 321 G~vvV~TSn~~PedLy-----~~gl~r~~F~------p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
+++||+.+||+ +.+. ++++.+-.++ ..+++|+.+.+-+.++..+|.+...
T Consensus 570 ~V~ViAATNRp-d~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La 630 (693)
T KOG0730|consen 570 NVLVIAATNRP-DMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELA 630 (693)
T ss_pred cEEEEeccCCh-hhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHH
Confidence 56888999984 4444 4555554333 3567788888888888778887654
No 441
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=3.4e-07 Score=109.06 Aligned_cols=146 Identities=21% Similarity=0.213 Sum_probs=102.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++++.+.+.||+|||||||+++++|.+.....+.++|++++.-.. +.. .++.++|..|+ ...++.+||
T Consensus 139 ~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~--e~~---------~~~~~aY~~e~-DvH~p~lTV 206 (1391)
T KOG0065|consen 139 KPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLK--EFV---------PKKTVAYNSEQ-DVHFPELTV 206 (1391)
T ss_pred cCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccc--ccc---------cCceEEecccc-ccccceeEE
Confidence 578999999999999999999999987643344568999884221 111 12456777775 567888999
Q ss_pred HHHHHHHHhhhhH---------HH----Hhc------cHHHHH-----hHhhhhhcccC-----------CCccEEEEeC
Q 007851 254 MEWVAAEEKYKQE---------VQ----MKN------ILPAVA-----DKFLVDQHADQ-----------RGASILCFDE 298 (587)
Q Consensus 254 ~eni~~~~~~~~~---------~~----~~~------~L~~la-----~~l~~~LSgGq-----------~~p~LL~LDE 298 (587)
+|.+.|..+..+. .+ ..+ .+...+ +.+.+..|||+ .+++++|.||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 9999987653321 01 001 112222 33345789997 6899999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 299 IQT-VDVFAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 299 Pt~-lD~~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
++. ||.+++-.+...++.+... +.+++++=..+
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~ 321 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQP 321 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccC
Confidence 998 9999999999999998764 55554444443
No 442
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=98.49 E-value=6.9e-07 Score=97.08 Aligned_cols=28 Identities=43% Similarity=0.713 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+|++|+||+|||||||++++++.+.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~ 204 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTT 204 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999999998765
No 443
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.48 E-value=1.3e-06 Score=87.84 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=32.4
Q ss_pred CCccEEEEeCCCC-CCHHHHHH-HHHHHHHHHhC-CcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVA-LSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~-L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++.+++||||.. +|+.+... ...+++.+.+. +.++|++||..
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~ 154 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP 154 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH
Confidence 4689999999987 77666655 46788888876 76666666654
No 444
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.46 E-value=2.7e-07 Score=95.33 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=35.0
Q ss_pred CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 290 GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 290 ~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+|++||+|||+. +|+.....+.++|..+.+ +.++|++||.
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~ 232 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHL 232 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEech
Confidence 999999999998 999999999999999865 6677777775
No 445
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=98.41 E-value=1.2e-06 Score=102.42 Aligned_cols=44 Identities=25% Similarity=0.280 Sum_probs=37.2
Q ss_pred CCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhCCcEEEEecCCCc
Q 007851 289 RGASILCFDEIQT-VDVFAIVAL-SGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
.++.+++||||+. +|+.+...| ..+++.+.+.|.++|+|||...
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~e 446 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKE 446 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 3689999999998 999999888 5788888888888888888653
No 446
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.41 E-value=1.2e-06 Score=94.74 Aligned_cols=68 Identities=25% Similarity=0.283 Sum_probs=51.6
Q ss_pred ccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCch
Q 007851 291 ASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEV 365 (587)
Q Consensus 291 p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~ 365 (587)
.++||+|..+. -+......+..+|..+...|..||+||+++|.+|-.- .. +...++ ..+-++++..+.
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~-~~-----rL~SR~-~~Gl~~~I~~Pd 245 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGL-ED-----RLRSRL-EWGLVVEIEPPD 245 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccc-cH-----HHHHHH-hceeEEeeCCCC
Confidence 68999999997 5556789999999999999999999999999885421 01 123344 456777787763
No 447
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.41 E-value=8.3e-07 Score=95.25 Aligned_cols=28 Identities=43% Similarity=0.725 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+|++|+||+|||||||++++++.+.
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~ 181 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETN 181 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCC
Confidence 4689999999999999999999998775
No 448
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.41 E-value=4.5e-07 Score=89.94 Aligned_cols=41 Identities=20% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
...+++||||+.+ +|...+..+..+|..+.+...+||+||+
T Consensus 157 ~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~ 198 (220)
T PF02463_consen 157 KPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHN 198 (220)
T ss_dssp S--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-
T ss_pred cccccccccccccccccccccccccccccccccccccccccc
Confidence 5778999999998 9999999999999998765445555544
No 449
>PRK09087 hypothetical protein; Validated
Probab=98.40 E-value=8.2e-07 Score=89.38 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=45.2
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCch
Q 007851 292 SILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEV 365 (587)
Q Consensus 292 ~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~ 365 (587)
.+||+|+.+.+. .+...|..++..+.+.|+.+|+|++.+|..+..- .-+...++ ..+.++.+....
T Consensus 89 ~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~------~~dL~SRl-~~gl~~~l~~pd 154 (226)
T PRK09087 89 GPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVK------LPDLKSRL-KAATVVEIGEPD 154 (226)
T ss_pred CeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhccc------cccHHHHH-hCCceeecCCCC
Confidence 589999998743 2346699999999999999999999988765420 00012222 344777777653
No 450
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.39 E-value=1e-06 Score=79.16 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=21.3
Q ss_pred EEEEcCCCChHHHHHHHHHhccC
Q 007851 179 LYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 179 lyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++|+||+|||||||.+.++..+.
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999998875
No 451
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.39 E-value=6.4e-07 Score=97.77 Aligned_cols=149 Identities=13% Similarity=0.139 Sum_probs=89.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|-.+.|.||||||||.|.+++.|+-|. . .+..+. . ....+-|++|-+ .....|.
T Consensus 506 ~~G~hLLItGPNGCGKSSLfRILggLWPv--y-~g~L~~-------------P------~~~~mFYIPQRP--Yms~gtl 561 (728)
T KOG0064|consen 506 EPGMHLLITGPNGCGKSSLFRILGGLWPV--Y-NGLLSI-------------P------RPNNIFYIPQRP--YMSGGTL 561 (728)
T ss_pred cCCceEEEECCCCccHHHHHHHHhccCcc--c-CCeeec-------------C------CCcceEeccCCC--ccCcCcc
Confidence 46788999999999999999999999873 1 122210 0 112345556532 2223455
Q ss_pred HHHHHHHHhhh-----h--HHHHhcc-----HHH---------HHhHhhhhhcccC-----------CCccEEEEeCCCC
Q 007851 254 MEWVAAEEKYK-----Q--EVQMKNI-----LPA---------VADKFLVDQHADQ-----------RGASILCFDEIQT 301 (587)
Q Consensus 254 ~eni~~~~~~~-----~--~~~~~~~-----L~~---------la~~l~~~LSgGq-----------~~p~LL~LDEPt~ 301 (587)
+|-|.++.... + ..+...+ +.. ....+-..||||+ ++|+.-+|||-|+
T Consensus 562 RDQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTs 641 (728)
T KOG0064|consen 562 RDQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTS 641 (728)
T ss_pred cceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhc
Confidence 55554432111 1 0111111 111 1223344799996 8999999999997
Q ss_pred ---CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCchhhhh
Q 007851 302 ---VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSEVDYRR 369 (587)
Q Consensus 302 ---lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~~DyR~ 369 (587)
.|+.+ .+++...+.|..++..+|++. +.+-|...++.|+..-|+.
T Consensus 642 AvsidvE~-----~i~~~ak~~gi~llsithrps------------------lwk~h~~ll~~dg~g~~q~ 689 (728)
T KOG0064|consen 642 AVSIDVEG-----KIFQAAKDAGISLLSITHRPS------------------LWKYHTHLLEFDGEGGWQF 689 (728)
T ss_pred ccccchHH-----HHHHHHHhcCceEEEeecCcc------------------HHHHHHHHHhccCCCCeee
Confidence 66655 456666677999999999862 2334445555666655654
No 452
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.38 E-value=2.7e-06 Score=76.23 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=34.7
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHh-----CCcEEEEecCCCcc
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLS-----TGTVLVATSNRAPW 333 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~-----~G~vvV~TSn~~Pe 333 (587)
.++.+|++||+..++......+..++..+.. .+..+|+++|..+.
T Consensus 83 ~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~ 132 (151)
T cd00009 83 AKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLL 132 (151)
T ss_pred CCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCcccc
Confidence 4689999999998766677778888888754 46788888886653
No 453
>PRK06620 hypothetical protein; Validated
Probab=98.35 E-value=2e-06 Score=85.91 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=34.9
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
..++||+||.+.. ....|..++..+.+.|..+|+|++.+|..+
T Consensus 85 ~~d~lliDdi~~~---~~~~lf~l~N~~~e~g~~ilits~~~p~~l 127 (214)
T PRK06620 85 KYNAFIIEDIENW---QEPALLHIFNIINEKQKYLLLTSSDKSRNF 127 (214)
T ss_pred cCCEEEEeccccc---hHHHHHHHHHHHHhcCCEEEEEcCCCcccc
Confidence 3589999999853 224788999999999999999999988853
No 454
>CHL00206 ycf2 Ycf2; Provisional
Probab=98.35 E-value=7.4e-07 Score=109.12 Aligned_cols=29 Identities=17% Similarity=0.500 Sum_probs=26.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+|+|+.|+||+|||||.|++++|+....
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~V 1656 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYV 1656 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCC
Confidence 57899999999999999999999998753
No 455
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.30 E-value=6.4e-06 Score=76.04 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=32.7
Q ss_pred CCccEEEEeCCCC-CC----------HHHHHHHHHHHHHHHhCCcEEEEecCCCccc
Q 007851 289 RGASILCFDEIQT-VD----------VFAIVALSGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD----------~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
.++++|++||++. .+ ......+..++..+.+.|+++|+|+|....+
T Consensus 84 ~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 84 GGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 5799999999996 32 2335667777766666688888888866443
No 456
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.30 E-value=2.3e-06 Score=91.16 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=26.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..+|.+++||||+|||||++.++++..+.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg 173 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMG 173 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcC
Confidence 46789999999999999999999998875
No 457
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.30 E-value=1.9e-06 Score=93.55 Aligned_cols=28 Identities=43% Similarity=0.725 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|++++|+||+|||||+|.++++..+.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~ 190 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETN 190 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhC
Confidence 5689999999999999999999998764
No 458
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.8e-06 Score=83.22 Aligned_cols=144 Identities=23% Similarity=0.307 Sum_probs=95.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
...|+|+.|+||+|+|||.|.++.+...... -+||...+. +.+.+ ++
T Consensus 178 IaQPKGvlLygppgtGktLlaraVahht~c~---firvsgsel---vqk~i-------ge-------------------- 224 (404)
T KOG0728|consen 178 IAQPKGVLLYGPPGTGKTLLARAVAHHTDCT---FIRVSGSEL---VQKYI-------GE-------------------- 224 (404)
T ss_pred CCCCcceEEecCCCCchhHHHHHHHhhcceE---EEEechHHH---HHHHh-------hh--------------------
Confidence 4578999999999999999999998776531 245543221 11111 00
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-----------CCHHHHHHHHHHHHHHH--h
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRLL--S 319 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-----------lD~~~a~~L~~Ll~~L~--~ 319 (587)
+.+ ....+.-.|++ +-|.|+++||..+ -|..-+..+.+|+.+|- +
T Consensus 225 -------gsr------mvrelfvmare---------hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfe 282 (404)
T KOG0728|consen 225 -------GSR------MVRELFVMARE---------HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFE 282 (404)
T ss_pred -------hHH------HHHHHHHHHHh---------cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccc
Confidence 000 00112233444 4699999999964 36666777778887772 2
Q ss_pred --CCcEEEEecCCC----ccccccCCchhHHhH------HHHHhhccceeEEecCCchhhhhhh
Q 007851 320 --TGTVLVATSNRA----PWDLNQDGMQREIFQ------KLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 320 --~G~vvV~TSn~~----PedLy~~gl~r~~F~------p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
+++-||+++|+. |.-|.++.+.|..-. ...++|+-|.+-+++-.++|.|...
T Consensus 283 atknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kia 346 (404)
T KOG0728|consen 283 ATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIA 346 (404)
T ss_pred cccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHH
Confidence 355678888875 455667888875322 3568899999999999999999864
No 459
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.25 E-value=2.2e-06 Score=86.02 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFY 197 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~ 197 (587)
.++.+.|.||||+||||||++++
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~ 51 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIG 51 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHH
Confidence 56889999999999999999975
No 460
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.24 E-value=3.3e-06 Score=83.71 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=35.7
Q ss_pred CccEEEEeCCCCCCH--HHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 290 GASILCFDEIQTVDV--FAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~--~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
++.+|++||...++. .....|..++..+...+..+|+|++..|.++
T Consensus 90 ~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~ 137 (226)
T TIGR03420 90 QADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQL 137 (226)
T ss_pred cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHC
Confidence 467999999998554 4477888999888777777888888776543
No 461
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.5e-06 Score=95.88 Aligned_cols=81 Identities=22% Similarity=0.353 Sum_probs=55.2
Q ss_pred CCccEEEEeCCCC------CC---HHHHHHHHHHHHHHHh----CCcEEEEecCCC----ccccccCCchhHHhHHH---
Q 007851 289 RGASILCFDEIQT------VD---VFAIVALSGIVSRLLS----TGTVLVATSNRA----PWDLNQDGMQREIFQKL--- 348 (587)
Q Consensus 289 ~~p~LL~LDEPt~------lD---~~~a~~L~~Ll~~L~~----~G~vvV~TSn~~----PedLy~~gl~r~~F~p~--- 348 (587)
..|+||+||||.+ .| +.+ ..+-+++.+|-. .|+.|++++.|+ |.-|.++++.|-.|||+
T Consensus 759 a~PCiLFFDEfdSiAPkRGhDsTGVTD-RVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~ 837 (952)
T KOG0735|consen 759 AKPCILFFDEFDSIAPKRGHDSTGVTD-RVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDE 837 (952)
T ss_pred cCCeEEEeccccccCcccCCCCCCchH-HHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCc
Confidence 4799999999975 22 223 356677777632 467777777665 45567789999888875
Q ss_pred ---HHhhccceeEEecCCchhhhhh
Q 007851 349 ---VAKLEKHCEIIPIGSEVDYRRL 370 (587)
Q Consensus 349 ---I~~L~~~~~Vv~l~~~~DyR~~ 370 (587)
+++|+.-..-+.++..+|+-..
T Consensus 838 ~eRl~il~~ls~s~~~~~~vdl~~~ 862 (952)
T KOG0735|consen 838 PERLEILQVLSNSLLKDTDVDLECL 862 (952)
T ss_pred HHHHHHHHHHhhccCCccccchHHH
Confidence 4566555666667777777654
No 462
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.20 E-value=3.3e-06 Score=85.47 Aligned_cols=28 Identities=36% Similarity=0.648 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
+|+.|++|||+|+||||+.+++++....
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kv 177 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKV 177 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCC
Confidence 5899999999999999999999998763
No 463
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.20 E-value=1.1e-05 Score=81.06 Aligned_cols=43 Identities=12% Similarity=0.213 Sum_probs=30.0
Q ss_pred CCccEEEEeCCCC----CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT----VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~----lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|+++++|||++ .|......+...+..+.+.|.++++|+|..
T Consensus 119 ~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~ 165 (234)
T PRK06067 119 KREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPY 165 (234)
T ss_pred cCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCC
Confidence 4799999999995 444444444445666667788888888753
No 464
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.19 E-value=3e-06 Score=81.30 Aligned_cols=44 Identities=16% Similarity=0.130 Sum_probs=36.0
Q ss_pred CCccEEEEeCCCC-CC---HHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 289 RGASILCFDEIQT-VD---VFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD---~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
.+|++|++|||+. +| ......+.+++..+.+.|+++|+++|...
T Consensus 94 ~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~~~ 141 (187)
T cd01124 94 FKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQSG 141 (187)
T ss_pred hCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecccc
Confidence 4799999999998 77 66677788899998888988877777543
No 465
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=98.18 E-value=4.7e-06 Score=93.13 Aligned_cols=28 Identities=39% Similarity=0.657 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|+|++|+||+|||||+|++++++...
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~ 113 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAG 113 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 4578999999999999999999998764
No 466
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.17 E-value=1.3e-05 Score=99.76 Aligned_cols=65 Identities=22% Similarity=0.256 Sum_probs=52.3
Q ss_pred hhhcccC--------------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhH
Q 007851 282 VDQHADQ--------------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQ 346 (587)
Q Consensus 282 ~~LSgGq--------------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~ 346 (587)
.+||||+ ..+.+++|||||. |++.+...|..+|.+|.+.|-+||+..|.
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tvivieH~---------------- 1761 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIYIDHD---------------- 1761 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeCC----------------
Confidence 4788885 2468999999999 99999999999999999998766555554
Q ss_pred HHHHhhccceeEEecCCc
Q 007851 347 KLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 347 p~I~~L~~~~~Vv~l~~~ 364 (587)
.++|+..-.+|+|+.+
T Consensus 1762 --~~~i~~aD~iidlgp~ 1777 (1809)
T PRK00635 1762 --PALLKQADYLIEMGPG 1777 (1809)
T ss_pred --HHHHHhCCEEEEcCCC
Confidence 4577777778888643
No 467
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.17 E-value=5.2e-06 Score=97.06 Aligned_cols=28 Identities=36% Similarity=0.660 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+|++|+||+|||||+|.+++++.+.
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~ 512 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESG 512 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcC
Confidence 4679999999999999999999998764
No 468
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.16 E-value=2.5e-05 Score=68.99 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
+..++|+||+|+|||||+..++..+..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~ 28 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGP 28 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCC
Confidence 478999999999999999999988763
No 469
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=98.16 E-value=3.3e-06 Score=84.61 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=32.5
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHH-HHHHHhC-CcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGI-VSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~L-l~~L~~~-G~vvV~TSn~~ 331 (587)
.++.++++|||.. +++.+...+... ++.|.+. |..+|+++|..
T Consensus 108 ~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 108 TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 4789999999998 888887777666 7777765 77666666643
No 470
>CHL00176 ftsH cell division protein; Validated
Probab=98.15 E-value=7.2e-06 Score=94.03 Aligned_cols=28 Identities=43% Similarity=0.720 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|++++|+||+|||||+|++++++...
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~ 241 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAE 241 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999999998654
No 471
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=7.7e-06 Score=84.65 Aligned_cols=81 Identities=21% Similarity=0.269 Sum_probs=49.6
Q ss_pred CCccEEEEeCCCC-----------CCHHHHHHHHHHHHHHHh---CC-cEEEEecCCCcccccc-----CCchhHHhHHH
Q 007851 289 RGASILCFDEIQT-----------VDVFAIVALSGIVSRLLS---TG-TVLVATSNRAPWDLNQ-----DGMQREIFQKL 348 (587)
Q Consensus 289 ~~p~LL~LDEPt~-----------lD~~~a~~L~~Ll~~L~~---~G-~vvV~TSn~~PedLy~-----~gl~r~~F~p~ 348 (587)
+.|++|++||..+ -|..-..-|++|+.++-. .| +-+|+|+|+ |+-||+ +++.|..-.|.
T Consensus 224 ~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNr-pdtLdpaLlRpGRldrk~~iPl 302 (388)
T KOG0651|consen 224 VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNR-PDTLDPALLRPGRLDRKVEIPL 302 (388)
T ss_pred hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCC-ccccchhhcCCccccceeccCC
Confidence 3589999999842 344444555566655532 23 468899997 566666 55555544453
Q ss_pred ------HHhhccceeEEecCCchhhhhh
Q 007851 349 ------VAKLEKHCEIIPIGSEVDYRRL 370 (587)
Q Consensus 349 ------I~~L~~~~~Vv~l~~~~DyR~~ 370 (587)
+.+++-|..-+..-|+.||+..
T Consensus 303 pne~~r~~I~Kih~~~i~~~Geid~eai 330 (388)
T KOG0651|consen 303 PNEQARLGILKIHVQPIDFHGEIDDEAI 330 (388)
T ss_pred cchhhceeeEeeccccccccccccHHHH
Confidence 2445556666666677777643
No 472
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=98.11 E-value=1.4e-05 Score=93.83 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=35.1
Q ss_pred CCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVAL-SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|.++++|||+. +|+.+...+ ..+++.+.+.|.++|+|||..
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~ 450 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYK 450 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChH
Confidence 4789999999998 999988777 457888888888777777764
No 473
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=98.11 E-value=2.5e-05 Score=82.20 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.++.+.|.||+||||||||+++.+.+++
T Consensus 143 ~~~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHccCCc
Confidence 5789999999999999999999999874
No 474
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=98.10 E-value=9.4e-06 Score=89.20 Aligned_cols=28 Identities=43% Similarity=0.729 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+|+.|+||+|||||+|++++++.+.
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~ 242 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETS 242 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5789999999999999999999999775
No 475
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.07 E-value=1.9e-05 Score=78.89 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=34.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCc-EEEEecCCCc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGT-VLVATSNRAP 332 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~-vvV~TSn~~P 332 (587)
++++|++||...++......|..++..+.+.|. ++|+|++..|
T Consensus 90 ~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~ 133 (227)
T PRK08903 90 EAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAP 133 (227)
T ss_pred cCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCH
Confidence 578999999998877778888999988887776 4667776654
No 476
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.07 E-value=1.4e-05 Score=89.01 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++|+|+.|+||+|||||++.+++++...
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~ 284 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQ 284 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 5789999999999999999999998765
No 477
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.06 E-value=3e-05 Score=79.89 Aligned_cols=40 Identities=20% Similarity=0.227 Sum_probs=32.5
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|++|++|||++ +|+..+..+.+.+..+ +.+++++||..
T Consensus 209 ~~~~illlDEp~a~LD~~~~~~l~~~l~~~---~q~ii~~~~~~ 249 (270)
T cd03242 209 GEYPVLLLDDVLAELDLGRQAALLDAIEGR---VQTFVTTTDLA 249 (270)
T ss_pred CCCcEEEEcCcchhcCHHHHHHHHHHhhcC---CCEEEEeCCch
Confidence 4899999999999 9999999888888764 35777777654
No 478
>PRK13695 putative NTPase; Provisional
Probab=98.04 E-value=2.3e-05 Score=75.19 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=30.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+|++|++|||..++..+ ..+.+++..+.+.|..+|+++|.
T Consensus 95 ~~~~~lllDE~~~~e~~~-~~~~~~l~~~~~~~~~~i~v~h~ 135 (174)
T PRK13695 95 EEADVIIIDEIGKMELKS-PKFVKAVEEVLDSEKPVIATLHR 135 (174)
T ss_pred CCCCEEEEECCCcchhhh-HHHHHHHHHHHhCCCeEEEEECc
Confidence 579999999987655444 34566777777778888888885
No 479
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.03 E-value=1.5e-05 Score=89.06 Aligned_cols=28 Identities=36% Similarity=0.672 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+|++|+||+|||||++.++++..+.
T Consensus 214 ~~p~GILLyGPPGTGKT~LAKAlA~eL~ 241 (512)
T TIGR03689 214 KPPKGVLLYGPPGCGKTLIAKAVANSLA 241 (512)
T ss_pred CCCcceEEECCCCCcHHHHHHHHHHhhc
Confidence 4678999999999999999999998764
No 480
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=1.8e-05 Score=90.99 Aligned_cols=142 Identities=25% Similarity=0.295 Sum_probs=87.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+|+.|+||+|||||.|.++++|...-|. ..+...+|+. .... +|
T Consensus 342 KiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF---~svSGSEFvE-------~~~g--------~~--------------- 388 (774)
T KOG0731|consen 342 KIPKGVLLVGPPGTGKTLLAKAIAGEAGVPF---FSVSGSEFVE-------MFVG--------VG--------------- 388 (774)
T ss_pred cCcCceEEECCCCCcHHHHHHHHhcccCCce---eeechHHHHH-------Hhcc--------cc---------------
Confidence 5789999999999999999999999875321 1222222321 1100 00
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC----C--------CHHHHHHHHHHHHHHHh--
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT----V--------DVFAIVALSGIVSRLLS-- 319 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~----l--------D~~~a~~L~~Ll~~L~~-- 319 (587)
.... ..|...|+.. -|.|++.||+.+ - +.....-|.+|+-++=.
T Consensus 389 ------------asrv-r~lf~~ar~~---------aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~ 446 (774)
T KOG0731|consen 389 ------------ASRV-RDLFPLARKN---------APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFE 446 (774)
T ss_pred ------------hHHH-HHHHHHhhcc---------CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCc
Confidence 0001 1133345543 599999999854 1 22344566777777622
Q ss_pred --CCcEEEEecCCC----ccccccCCchhHHhHHH------HHhhccceeEEecC-Cchhhhhh
Q 007851 320 --TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCEIIPIG-SEVDYRRL 370 (587)
Q Consensus 320 --~G~vvV~TSn~~----PedLy~~gl~r~~F~p~------I~~L~~~~~Vv~l~-~~~DyR~~ 370 (587)
.|+++++++|++ |+-|-++++.|..+++. .++++-|..-+.++ ..+||.+.
T Consensus 447 ~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~ 510 (774)
T KOG0731|consen 447 TSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKL 510 (774)
T ss_pred CCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHH
Confidence 356778888875 23345577777666542 35666677777774 77889884
No 481
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.02 E-value=1.5e-05 Score=93.31 Aligned_cols=28 Identities=39% Similarity=0.704 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|++++|+||+|||||||++++++.+.
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~ 237 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAG 237 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC
Confidence 4689999999999999999999998775
No 482
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.8e-05 Score=83.60 Aligned_cols=28 Identities=43% Similarity=0.722 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+++|+.|+||+|||||+|.++++....
T Consensus 125 ~p~kGiLL~GPpG~GKTmlAKA~Akeag 152 (386)
T KOG0737|consen 125 RPPKGILLYGPPGTGKTMLAKAIAKEAG 152 (386)
T ss_pred cCCccceecCCCCchHHHHHHHHHHHcC
Confidence 4789999999999999999999986543
No 483
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.92 E-value=6.7e-05 Score=82.02 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=101.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHH-HH-HHHHHhhhhhhcccceeeeeccC--CCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKI-NE-HMHRLWKNQVAEKSLRSSISGWI--TNLP 248 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v-~~-~l~~~~~~~~~~~~~ig~v~q~~--~~~~ 248 (587)
...|+.++|-|=.|-|-+-|+.+|+|+.++. +++|.+++. ++ .. .... .....+++|+.+. ..+.
T Consensus 281 Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~---~G~I~l~G~--~v~~~~~~~~------~r~~G~~~VPedR~~~Glv 349 (501)
T COG3845 281 VRAGEIVGIAGVAGNGQSELVEAISGLRKPA---SGRILLNGK--DVLGRLSPRE------RRRLGLAYVPEDRHGHGLV 349 (501)
T ss_pred EecCcEEEEEecCCCCHHHHHHHHhCCCccC---CceEEECCE--eccccCCHHH------HHhcCCccCChhhccCccc
Confidence 3578999999999999999999999998642 367777763 22 00 0111 1235678888875 4688
Q ss_pred CCCcHHHHHHHHHhhhh-----HHHHhccHHHHHh--------------HhhhhhcccC-----------CCccEEEEeC
Q 007851 249 FDSKVMEWVAAEEKYKQ-----EVQMKNILPAVAD--------------KFLVDQHADQ-----------RGASILCFDE 298 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~-----~~~~~~~L~~la~--------------~l~~~LSgGq-----------~~p~LL~LDE 298 (587)
.++++.||+.+...... ..-....+...+. ..+..||||. .+|++|++-+
T Consensus 350 ~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~q 429 (501)
T COG3845 350 LDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQ 429 (501)
T ss_pred cCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcC
Confidence 89999999987543210 0000001111222 2245899994 7999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 299 IQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 299 Pt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
||- +|++.+..+.+.+.++.+.|..|+..|-
T Consensus 430 PTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~ 461 (501)
T COG3845 430 PTRGLDVGAIEFIHERLLELRDAGKAVLLISE 461 (501)
T ss_pred CCccccHHHHHHHHHHHHHHHhcCCEEEEEeh
Confidence 998 9999999999999999999985544444
No 484
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.91 E-value=1.7e-05 Score=70.68 Aligned_cols=66 Identities=15% Similarity=0.137 Sum_probs=41.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+++.++|.||+|||||||++++. . ++.++ .+ .++.. +.. ....+.+++++|+ .+..++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~---~----G~i~~--~g--~di~~-~~~-----~~~~~~~~~~~q~----lf~~ti 71 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI---K----RKHRL--VG--DDNVE-IRE-----DSKDELIGRNPEL----GLEIRL 71 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh---C----CeEEE--ee--EeHHH-hhh-----hhcCCEEEEechh----cchhhH
Confidence 357999999999999999999985 1 33333 33 12211 111 1112344555554 678899
Q ss_pred HHHHHHH
Q 007851 254 MEWVAAE 260 (587)
Q Consensus 254 ~eni~~~ 260 (587)
++||.++
T Consensus 72 ~~Ni~~~ 78 (107)
T cd00820 72 RLNIFLI 78 (107)
T ss_pred Hhhceee
Confidence 9999773
No 485
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.89 E-value=6.8e-05 Score=76.28 Aligned_cols=117 Identities=25% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
...+|+|+.||||+|+|||.+.++.++-... --+||... ++. .+.- ++
T Consensus 207 gidppkgvllygppgtgktl~aravanrtda---cfirvigs----elv---qkyv---ge------------------- 254 (435)
T KOG0729|consen 207 GIDPPKGVLLYGPPGTGKTLCARAVANRTDA---CFIRVIGS----ELV---QKYV---GE------------------- 254 (435)
T ss_pred CCCCCCceEEeCCCCCchhHHHHHHhcccCc---eEEeehhH----HHH---HHHh---hh-------------------
Confidence 4468999999999999999999999876542 12344221 111 1110 00
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-----------CCHHHHHHHHHHHHHHH--
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-----------VDVFAIVALSGIVSRLL-- 318 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-----------lD~~~a~~L~~Ll~~L~-- 318 (587)
+.+ ....|.+.|+. .+++|++|||..+ -|-.-+..+.+|+.+|-
T Consensus 255 --------gar------mvrelf~mart---------kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 255 --------GAR------MVRELFEMART---------KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred --------hHH------HHHHHHHHhcc---------cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 000 00113334443 4789999999964 23444566677777763
Q ss_pred h-CC-cEEEEecCCC----ccccccCCchhH
Q 007851 319 S-TG-TVLVATSNRA----PWDLNQDGMQRE 343 (587)
Q Consensus 319 ~-~G-~vvV~TSn~~----PedLy~~gl~r~ 343 (587)
+ +| +-|++++|++ |.-|-++.+.|.
T Consensus 312 dprgnikvlmatnrpdtldpallrpgrldrk 342 (435)
T KOG0729|consen 312 DPRGNIKVLMATNRPDTLDPALLRPGRLDRK 342 (435)
T ss_pred CCCCCeEEEeecCCCCCcCHhhcCCcccccc
Confidence 2 34 4577888885 344555777773
No 486
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=3.8e-05 Score=82.52 Aligned_cols=51 Identities=16% Similarity=0.194 Sum_probs=36.3
Q ss_pred HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 277 ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
-++....+|||. .+|.+|+|||||. ||......|-+.|..+. .++++.||.
T Consensus 406 Q~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHD 468 (807)
T KOG0066|consen 406 QERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHD 468 (807)
T ss_pred hcCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecc
Confidence 334444688885 6999999999999 99888777777776653 355555553
No 487
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=6.6e-05 Score=76.15 Aligned_cols=82 Identities=20% Similarity=0.314 Sum_probs=50.9
Q ss_pred CCccEEEEeCCCC-----------CCHHHHHHHHHHHHHHHh----CCcEEEEecCCC----ccccccCCchhHHhHHH-
Q 007851 289 RGASILCFDEIQT-----------VDVFAIVALSGIVSRLLS----TGTVLVATSNRA----PWDLNQDGMQREIFQKL- 348 (587)
Q Consensus 289 ~~p~LL~LDEPt~-----------lD~~~a~~L~~Ll~~L~~----~G~vvV~TSn~~----PedLy~~gl~r~~F~p~- 348 (587)
..|.|+++||..+ -|..-+..+.+|+..|-. ..+-||+++||. |.-|..++|.|..-.|.
T Consensus 263 kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~P 342 (424)
T KOG0652|consen 263 KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHP 342 (424)
T ss_pred cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccccCHHHhhcccccccccCCCC
Confidence 4699999999853 244445556666666621 235688889975 45566677877543332
Q ss_pred -----HHhhccceeEEecCCchhhhhh
Q 007851 349 -----VAKLEKHCEIIPIGSEVDYRRL 370 (587)
Q Consensus 349 -----I~~L~~~~~Vv~l~~~~DyR~~ 370 (587)
-.+++-|.+-++++..++|-..
T Consensus 343 ne~aRarIlQIHsRKMnv~~DvNfeEL 369 (424)
T KOG0652|consen 343 NEEARARILQIHSRKMNVSDDVNFEEL 369 (424)
T ss_pred ChHHHHHHHHHhhhhcCCCCCCCHHHH
Confidence 2345556666666666666543
No 488
>PLN03025 replication factor C subunit; Provisional
Probab=97.88 E-value=6e-05 Score=79.53 Aligned_cols=60 Identities=18% Similarity=0.275 Sum_probs=41.5
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
+.+|+++||...+....+..|.+.++.. ...+.+|+++|..+ . .+.-|..+|.++.+...
T Consensus 99 ~~kviiiDE~d~lt~~aq~aL~~~lE~~-~~~t~~il~~n~~~-~-------------i~~~L~SRc~~i~f~~l 158 (319)
T PLN03025 99 RHKIVILDEADSMTSGAQQALRRTMEIY-SNTTRFALACNTSS-K-------------IIEPIQSRCAIVRFSRL 158 (319)
T ss_pred CeEEEEEechhhcCHHHHHHHHHHHhcc-cCCceEEEEeCCcc-c-------------cchhHHHhhhcccCCCC
Confidence 5789999999998877777777777543 33455677777432 1 13456678888887654
No 489
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.87 E-value=7.1e-05 Score=73.65 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+.|.||+||||||+++.+.+.++.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4788999999999999999888763
No 490
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.86 E-value=5e-05 Score=84.83 Aligned_cols=28 Identities=39% Similarity=0.667 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+++|+.|+||+|||||+|.++++....
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~ 301 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESR 301 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCC
Confidence 4678999999999999999999998553
No 491
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=97.86 E-value=3.2e-05 Score=89.20 Aligned_cols=28 Identities=36% Similarity=0.678 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|+|++|+||+||||||+.+++++.+.
T Consensus 183 ~~~~gill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 183 KIPKGVLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcC
Confidence 3578999999999999999999998775
No 492
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.84 E-value=0.00014 Score=76.10 Aligned_cols=60 Identities=20% Similarity=0.369 Sum_probs=39.5
Q ss_pred CccEEEEeCCCCC-CHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 290 GASILCFDEIQTV-DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 290 ~p~LL~LDEPt~l-D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
++++|++||+..+ +......|..+++.. ..++.+|+|+|... ..+..|..+|.++.+..+
T Consensus 100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~-~~~~~~Ilt~n~~~--------------~l~~~l~sR~~~i~~~~p 160 (316)
T PHA02544 100 GGKVIIIDEFDRLGLADAQRHLRSFMEAY-SKNCSFIITANNKN--------------GIIEPLRSRCRVIDFGVP 160 (316)
T ss_pred CCeEEEEECcccccCHHHHHHHHHHHHhc-CCCceEEEEcCChh--------------hchHHHHhhceEEEeCCC
Confidence 5789999999876 544445555555543 34567888887531 124567788888877544
No 493
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.83 E-value=7.4e-05 Score=72.66 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.++.+.|.||||||||||++++.+.+++
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~ 51 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPP 51 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5789999999999999999999999874
No 494
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=97.81 E-value=0.00019 Score=70.97 Aligned_cols=31 Identities=3% Similarity=0.015 Sum_probs=28.6
Q ss_pred CCccEEEEeCCC-----C-CCHHHHHHHHHHHHHHHh
Q 007851 289 RGASILCFDEIQ-----T-VDVFAIVALSGIVSRLLS 319 (587)
Q Consensus 289 ~~p~LL~LDEPt-----~-lD~~~a~~L~~Ll~~L~~ 319 (587)
.+|+++++|||+ + +|+.....+.++|..+..
T Consensus 169 ~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 169 NDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred hcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 689999999999 8 999999999999999854
No 495
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=1.6e-05 Score=89.54 Aligned_cols=142 Identities=25% Similarity=0.377 Sum_probs=88.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.-|+|+.|+||+|+|||+|.++++|....|. ..+...+|.. ++- .+|
T Consensus 181 kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPF---f~iSGS~FVe-mfV--------------GvG--------------- 227 (596)
T COG0465 181 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF---FSISGSDFVE-MFV--------------GVG--------------- 227 (596)
T ss_pred ccccceeEecCCCCCcHHHHHHHhcccCCCc---eeccchhhhh-hhc--------------CCC---------------
Confidence 4689999999999999999999999886431 2232233311 000 000
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCC------------CHHHHHHHHHHHHHH--Hh
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV------------DVFAIVALSGIVSRL--LS 319 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~l------------D~~~a~~L~~Ll~~L--~~ 319 (587)
.....+ +..-|++ ..|+|+++||+.++ |-. ...|.+|+.++ +.
T Consensus 228 ------------AsRVRd-LF~qAkk---------~aP~IIFIDEiDAvGr~Rg~g~Gggnder-EQTLNQlLvEmDGF~ 284 (596)
T COG0465 228 ------------ASRVRD-LFEQAKK---------NAPCIIFIDEIDAVGRQRGAGLGGGNDER-EQTLNQLLVEMDGFG 284 (596)
T ss_pred ------------cHHHHH-HHHHhhc---------cCCCeEEEehhhhcccccCCCCCCCchHH-HHHHHHHHhhhccCC
Confidence 000111 1112332 35899999999751 211 23455666555 22
Q ss_pred --CCcEEEEecCCC----ccccccCCchhHHhHHH------HHhhccceeEEecCCchhhhhhh
Q 007851 320 --TGTVLVATSNRA----PWDLNQDGMQREIFQKL------VAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 320 --~G~vvV~TSn~~----PedLy~~gl~r~~F~p~------I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
.|++|++.+||+ |.-|.++++.|+..++. -.+|+-|.+-+.++..+|+....
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iA 348 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIA 348 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHh
Confidence 467889999997 55567788888766543 35677777778888888888743
No 496
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.77 E-value=0.00015 Score=78.16 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=71.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
-+.+.++|.||.||||++++++|.++|. .+ +.+- .+ .++|-+|.. ..-+..||++
T Consensus 367 SeiivmlgEngtgkTTfi~mlag~~~pd-~~-~e~p-------------~l---------nVSykpqki-spK~~~tvR~ 421 (592)
T KOG0063|consen 367 SEIIVMLGENGTGKTTFIRMLAGRLKPD-EG-GEIP-------------VL---------NVSYKPQKI-SPKREGTVRQ 421 (592)
T ss_pred ceeEEEEccCCcchhHHHHHHhcCCCCC-cc-Cccc-------------cc---------ceecccccc-CccccchHHH
Confidence 3678899999999999999999988763 22 2210 00 112222211 1112234444
Q ss_pred HHHHHHhhhh-----HHHHhc--cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHH
Q 007851 256 WVAAEEKYKQ-----EVQMKN--ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSR 316 (587)
Q Consensus 256 ni~~~~~~~~-----~~~~~~--~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~ 316 (587)
.+.---+... ..+... .++.+.++-+..||||+ ..+++.++|||.+ +|...+..-...+++
T Consensus 422 ll~~kIr~ay~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikR 501 (592)
T KOG0063|consen 422 LLHTKIRDAYMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKR 501 (592)
T ss_pred HHHHHhHhhhcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHH
Confidence 4322111000 001111 24567777888999996 6889999999999 998887776777766
Q ss_pred HH
Q 007851 317 LL 318 (587)
Q Consensus 317 L~ 318 (587)
+.
T Consensus 502 fi 503 (592)
T KOG0063|consen 502 FI 503 (592)
T ss_pred HH
Confidence 54
No 497
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.77 E-value=6.9e-05 Score=80.60 Aligned_cols=62 Identities=18% Similarity=0.276 Sum_probs=50.0
Q ss_pred HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCc-EEEEecCCCccc
Q 007851 273 LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGT-VLVATSNRAPWD 334 (587)
Q Consensus 273 L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~-vvV~TSn~~Ped 334 (587)
|..+.++-..+||||+ ++.++.+||||.+ +|+..+......++.|..-.. +||+-|+..--|
T Consensus 203 L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLD 277 (592)
T KOG0063|consen 203 LNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLD 277 (592)
T ss_pred HhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHH
Confidence 4556777788999996 7999999999999 999999999999999987655 666666654333
No 498
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=4.9e-05 Score=86.49 Aligned_cols=82 Identities=16% Similarity=0.311 Sum_probs=50.9
Q ss_pred CCccEEEEeCCCCC--------CHHHH--HHHHHHHHHH---Hh---CCcEEEEecCCCccccc-----cCCchhHHhH-
Q 007851 289 RGASILCFDEIQTV--------DVFAI--VALSGIVSRL---LS---TGTVLVATSNRAPWDLN-----QDGMQREIFQ- 346 (587)
Q Consensus 289 ~~p~LL~LDEPt~l--------D~~~a--~~L~~Ll~~L---~~---~G~vvV~TSn~~PedLy-----~~gl~r~~F~- 346 (587)
..|+||+|||..++ |-+.. .++.+||.+| .+ +++-||.+|||+ +-|. ++++++-.|+
T Consensus 763 A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRP-DLLDpALLRPGRFDKLvyvG 841 (953)
T KOG0736|consen 763 AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRP-DLLDPALLRPGRFDKLVYVG 841 (953)
T ss_pred cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCc-cccChhhcCCCccceeEEec
Confidence 47999999999753 33322 2455555555 22 345688889985 4333 3444332222
Q ss_pred ------HHHHhhccceeEEecCCchhhhhhh
Q 007851 347 ------KLVAKLEKHCEIIPIGSEVDYRRLI 371 (587)
Q Consensus 347 ------p~I~~L~~~~~Vv~l~~~~DyR~~~ 371 (587)
.-..+|++-.+-+.+|.++|.+...
T Consensus 842 ~~~d~esk~~vL~AlTrkFkLdedVdL~eiA 872 (953)
T KOG0736|consen 842 PNEDAESKLRVLEALTRKFKLDEDVDLVEIA 872 (953)
T ss_pred CCccHHHHHHHHHHHHHHccCCCCcCHHHHH
Confidence 2346677777788889999988764
No 499
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.73 E-value=0.00028 Score=74.17 Aligned_cols=60 Identities=12% Similarity=0.192 Sum_probs=37.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
.++++|++||+..++......|.++++.... .+.+|++++.++ . .+..|..+|.++.+..
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~~-~-------------~~~~L~sr~~~v~~~~ 183 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIMEQYSR-TCRFIIATRQPS-K-------------LIPPIRSRCLPLFFRA 183 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHHhccC-CCeEEEEeCChh-h-------------CchhhcCCceEEEecC
Confidence 3568999999998877666667777765433 344555555321 1 1334667777776643
No 500
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.69 E-value=0.00017 Score=82.84 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..+.|+||+|||||||++++++...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~ 200 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAK 200 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhh
Confidence 457899999999999999999998764
Done!