Query 007851
Match_columns 587
No_of_seqs 513 out of 3043
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 12:04:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007851.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007851hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gfo_A Cobalt import ATP-bindi 99.8 1.6E-21 5.5E-26 199.5 10.7 146 174-331 32-204 (275)
2 3tif_A Uncharacterized ABC tra 99.8 3.6E-21 1.2E-25 192.4 10.8 148 174-331 29-206 (235)
3 3rlf_A Maltose/maltodextrin im 99.8 4.1E-21 1.4E-25 204.5 10.0 144 174-331 27-194 (381)
4 3tui_C Methionine import ATP-b 99.8 4.8E-21 1.6E-25 202.9 9.2 145 174-331 52-224 (366)
5 1b0u_A Histidine permease; ABC 99.8 2.5E-20 8.6E-25 189.2 14.0 144 174-330 30-212 (262)
6 2pcj_A ABC transporter, lipopr 99.8 1.4E-20 4.8E-25 186.6 11.9 145 174-330 28-199 (224)
7 1vpl_A ABC transporter, ATP-bi 99.8 3.1E-20 1.1E-24 188.0 14.2 145 174-331 39-206 (256)
8 2yz2_A Putative ABC transporte 99.8 2.3E-20 7.9E-25 189.8 12.2 144 174-331 31-198 (266)
9 1z47_A CYSA, putative ABC-tran 99.8 1.2E-20 3.9E-25 199.5 10.2 144 174-331 39-206 (355)
10 2yyz_A Sugar ABC transporter, 99.8 1.3E-20 4.6E-25 199.4 10.5 144 174-331 27-194 (359)
11 2olj_A Amino acid ABC transpor 99.8 2.5E-20 8.5E-25 189.5 11.6 147 174-330 48-218 (263)
12 3fvq_A Fe(3+) IONS import ATP- 99.8 2.7E-20 9.2E-25 196.9 11.9 148 174-331 28-199 (359)
13 2it1_A 362AA long hypothetical 99.8 1.6E-20 5.4E-25 199.0 9.8 144 174-331 27-194 (362)
14 3d31_A Sulfate/molybdate ABC t 99.8 2.2E-20 7.7E-25 196.9 10.9 144 174-331 24-188 (348)
15 1g6h_A High-affinity branched- 99.8 2.3E-20 7.8E-25 188.8 10.2 146 174-331 31-213 (257)
16 1g29_1 MALK, maltose transport 99.8 1.9E-20 6.5E-25 199.2 9.9 150 174-331 27-200 (372)
17 1v43_A Sugar-binding transport 99.8 1.6E-20 5.6E-25 199.6 9.4 144 174-331 35-202 (372)
18 1ji0_A ABC transporter; ATP bi 99.8 2.8E-20 9.7E-25 186.3 10.3 145 174-330 30-198 (240)
19 1oxx_K GLCV, glucose, ABC tran 99.8 1.5E-20 5.2E-25 198.7 7.2 149 174-331 29-201 (353)
20 2onk_A Molybdate/tungstate ABC 99.8 3.9E-20 1.3E-24 185.6 9.5 142 174-330 23-186 (240)
21 1sgw_A Putative ABC transporte 99.8 9.1E-20 3.1E-24 179.9 11.8 140 174-331 33-193 (214)
22 2nq2_C Hypothetical ABC transp 99.8 2.3E-19 8E-24 181.2 12.7 132 174-330 29-188 (253)
23 4g1u_C Hemin import ATP-bindin 99.8 5.9E-20 2E-24 186.9 8.2 145 174-331 35-208 (266)
24 2ff7_A Alpha-hemolysin translo 99.8 1.9E-19 6.6E-24 181.2 10.0 143 174-331 33-204 (247)
25 2qi9_C Vitamin B12 import ATP- 99.8 1.4E-19 4.8E-24 182.5 9.0 143 174-330 24-192 (249)
26 2ixe_A Antigen peptide transpo 99.8 4.7E-19 1.6E-23 180.7 12.3 143 174-330 43-216 (271)
27 3nh6_A ATP-binding cassette SU 99.8 3E-19 1E-23 185.3 10.0 142 174-330 78-248 (306)
28 2ihy_A ABC transporter, ATP-bi 99.8 2E-19 7E-24 184.2 7.4 149 174-331 45-223 (279)
29 2d2e_A SUFC protein; ABC-ATPas 99.8 4.2E-19 1.4E-23 178.8 8.8 146 174-331 27-203 (250)
30 2ghi_A Transport protein; mult 99.8 1E-18 3.5E-23 177.2 9.4 143 174-331 44-214 (260)
31 1mv5_A LMRA, multidrug resista 99.7 5.5E-19 1.9E-23 177.2 5.1 143 174-330 26-197 (243)
32 2pze_A Cystic fibrosis transme 99.7 5.2E-18 1.8E-22 168.7 11.2 130 174-330 32-189 (229)
33 2cbz_A Multidrug resistance-as 99.7 3.3E-18 1.1E-22 171.0 9.5 131 174-331 29-189 (237)
34 2zu0_C Probable ATP-dependent 99.7 3E-18 1E-22 174.4 8.6 149 174-331 44-224 (267)
35 3gd7_A Fusion complex of cysti 99.7 1.5E-18 5.1E-23 185.6 6.3 142 174-331 45-214 (390)
36 2pjz_A Hypothetical protein ST 99.7 6.8E-18 2.3E-22 171.5 9.6 136 173-330 28-184 (263)
37 3b5x_A Lipid A export ATP-bind 99.7 2.7E-17 9.3E-22 184.4 12.5 144 174-331 367-539 (582)
38 3b60_A Lipid A export ATP-bind 99.7 3.3E-17 1.1E-21 183.7 11.9 143 174-331 367-539 (582)
39 2bbs_A Cystic fibrosis transme 99.7 4.5E-17 1.5E-21 167.7 10.8 129 174-330 62-218 (290)
40 2yl4_A ATP-binding cassette SU 99.7 3.2E-17 1.1E-21 184.3 10.1 143 174-331 368-542 (595)
41 4a82_A Cystic fibrosis transme 99.7 3E-17 1E-21 184.0 9.1 143 174-331 365-536 (578)
42 3qf4_B Uncharacterized ABC tra 99.7 3.4E-17 1.2E-21 184.2 9.4 144 173-331 378-550 (598)
43 3qf4_A ABC transporter, ATP-bi 99.7 6.8E-17 2.3E-21 181.4 9.1 143 174-331 367-538 (587)
44 3bk7_A ABC transporter ATP-bin 99.6 8.6E-16 2.9E-20 173.0 14.4 132 174-330 380-531 (607)
45 3ozx_A RNAse L inhibitor; ATP 99.6 3.5E-16 1.2E-20 173.8 11.1 134 174-331 292-446 (538)
46 1yqt_A RNAse L inhibitor; ATP- 99.6 6.3E-16 2.1E-20 171.9 11.1 132 174-330 310-461 (538)
47 1yqt_A RNAse L inhibitor; ATP- 99.6 1.2E-15 4.1E-20 169.6 8.7 152 173-331 44-218 (538)
48 3ozx_A RNAse L inhibitor; ATP 99.6 8E-16 2.7E-20 171.0 6.7 158 172-331 21-197 (538)
49 3bk7_A ABC transporter ATP-bin 99.6 1.2E-15 4.2E-20 171.7 8.3 152 173-331 114-288 (607)
50 3g5u_A MCG1178, multidrug resi 99.6 3.7E-15 1.3E-19 180.7 12.4 143 174-331 414-585 (1284)
51 3g5u_A MCG1178, multidrug resi 99.5 4.6E-15 1.6E-19 179.9 9.6 144 174-332 1057-1231(1284)
52 4f4c_A Multidrug resistance pr 99.5 5.5E-15 1.9E-19 179.6 9.0 142 174-329 442-612 (1321)
53 3j16_B RLI1P; ribosome recycli 99.5 1.2E-14 4.1E-19 163.6 10.1 131 176-331 378-528 (608)
54 3ec2_A DNA replication protein 99.5 3.2E-14 1.1E-18 134.6 11.0 135 175-361 37-179 (180)
55 4f4c_A Multidrug resistance pr 99.5 3.1E-15 1.1E-19 181.8 4.3 143 174-331 1103-1276(1321)
56 3j16_B RLI1P; ribosome recycli 99.5 2.7E-14 9.3E-19 160.7 7.4 149 173-331 100-281 (608)
57 3ux8_A Excinuclease ABC, A sub 99.5 2.5E-14 8.7E-19 162.8 6.4 55 277-331 196-264 (670)
58 2iw3_A Elongation factor 3A; a 99.4 3.1E-13 1E-17 158.4 11.9 127 174-331 459-605 (986)
59 2iw3_A Elongation factor 3A; a 99.4 9.3E-13 3.2E-17 154.3 12.3 51 277-330 895-957 (986)
60 3ux8_A Excinuclease ABC, A sub 99.4 4.9E-13 1.7E-17 152.2 7.5 82 250-331 504-606 (670)
61 3b85_A Phosphate starvation-in 99.3 3.2E-13 1.1E-17 132.3 4.4 152 175-364 21-192 (208)
62 2w58_A DNAI, primosome compone 99.3 1.3E-12 4.6E-17 125.3 5.2 78 290-368 115-202 (202)
63 3sop_A Neuronal-specific septi 99.3 3E-12 1E-16 130.3 5.5 132 178-329 4-148 (270)
64 3qf7_A RAD50; ABC-ATPase, ATPa 99.2 5.8E-11 2E-15 125.7 14.8 51 280-330 276-344 (365)
65 1ye8_A Protein THEP1, hypothet 99.2 7.4E-12 2.5E-16 119.6 6.5 60 289-364 98-163 (178)
66 4aby_A DNA repair protein RECN 99.2 3E-11 1E-15 128.8 11.5 46 284-330 296-355 (415)
67 2kjq_A DNAA-related protein; s 99.2 7.4E-12 2.5E-16 116.1 5.7 96 175-337 35-131 (149)
68 2ehv_A Hypothetical protein PH 99.2 2.8E-12 9.6E-17 126.2 2.5 45 289-333 134-184 (251)
69 4gp7_A Metallophosphoesterase; 99.2 7.4E-12 2.5E-16 118.2 4.2 50 275-331 93-159 (171)
70 3pih_A Uvrabc system protein A 99.2 1.2E-10 4E-15 136.2 14.5 53 278-330 800-867 (916)
71 2npi_A Protein CLP1; CLP1-PCF1 99.1 8.5E-13 2.9E-17 144.0 -5.3 129 174-329 136-297 (460)
72 2r6f_A Excinuclease ABC subuni 99.1 9.6E-11 3.3E-15 136.7 11.0 54 277-330 839-907 (972)
73 2vf7_A UVRA2, excinuclease ABC 99.1 7E-11 2.4E-15 137.0 9.7 53 278-330 725-792 (842)
74 2qgz_A Helicase loader, putati 99.1 9.3E-12 3.2E-16 128.8 1.5 80 290-370 214-302 (308)
75 1tf7_A KAIC; homohexamer, hexa 99.1 8.7E-11 3E-15 130.0 8.3 141 174-333 37-187 (525)
76 2ygr_A Uvrabc system protein A 99.1 3E-10 1E-14 132.9 12.6 54 277-330 857-925 (993)
77 1znw_A Guanylate kinase, GMP k 99.1 2E-12 6.8E-17 125.4 -5.4 142 174-331 18-188 (207)
78 4a74_A DNA repair and recombin 99.0 1.7E-10 5.8E-15 111.9 6.0 142 174-333 23-182 (231)
79 1pzn_A RAD51, DNA repair and r 99.0 2.1E-10 7E-15 120.8 6.7 139 174-331 129-286 (349)
80 1e69_A Chromosome segregation 99.0 6.6E-10 2.3E-14 115.3 9.2 51 280-331 216-282 (322)
81 3b9q_A Chloroplast SRP recepto 99.0 7.8E-11 2.7E-15 121.8 0.2 140 174-330 98-256 (302)
82 2og2_A Putative signal recogni 98.9 1.8E-10 6.3E-15 121.7 -0.3 140 174-330 155-313 (359)
83 1tq4_A IIGP1, interferon-induc 98.9 4.4E-11 1.5E-15 128.7 -5.3 132 176-331 69-235 (413)
84 3aez_A Pantothenate kinase; tr 98.8 1.6E-09 5.5E-14 112.4 5.6 101 174-304 88-209 (312)
85 2eyu_A Twitching motility prot 98.8 5.3E-09 1.8E-13 105.7 8.7 111 174-331 23-133 (261)
86 2pt7_A CAG-ALFA; ATPase, prote 98.8 5.2E-09 1.8E-13 109.3 8.4 106 175-331 170-275 (330)
87 1s96_A Guanylate kinase, GMP k 98.8 3E-10 1E-14 112.0 -1.3 121 174-330 14-139 (219)
88 3qkt_A DNA double-strand break 98.8 1.8E-08 6.1E-13 105.3 11.8 51 280-330 245-313 (339)
89 1wb9_A DNA mismatch repair pro 98.8 5.7E-09 2E-13 120.8 7.1 123 174-331 605-730 (800)
90 3thx_B DNA mismatch repair pro 98.8 7.5E-09 2.6E-13 121.2 7.8 43 289-331 751-796 (918)
91 3thx_A DNA mismatch repair pro 98.7 7.4E-09 2.5E-13 121.5 7.5 43 289-331 740-785 (934)
92 2w0m_A SSO2452; RECA, SSPF, un 98.7 1.6E-08 5.4E-13 97.7 8.3 43 289-331 120-168 (235)
93 1sxj_E Activator 1 40 kDa subu 98.7 3.7E-08 1.3E-12 102.1 11.2 62 288-364 132-193 (354)
94 3szr_A Interferon-induced GTP- 98.7 6.2E-09 2.1E-13 117.3 5.8 138 179-330 48-195 (608)
95 1l8q_A Chromosomal replication 98.7 3.3E-08 1.1E-12 101.9 10.2 46 290-335 98-145 (324)
96 1tf7_A KAIC; homohexamer, hexa 98.7 3.6E-09 1.2E-13 117.0 3.1 120 174-331 279-417 (525)
97 4b4t_J 26S protease regulatory 98.7 1.6E-08 5.6E-13 108.1 7.7 142 173-370 179-346 (405)
98 2o8b_B DNA mismatch repair pro 98.7 2.3E-08 8E-13 118.5 9.5 43 289-331 867-912 (1022)
99 1ewq_A DNA mismatch repair pro 98.7 7E-09 2.4E-13 119.5 4.8 118 176-331 576-698 (765)
100 1cr0_A DNA primase/helicase; R 98.7 2.5E-08 8.5E-13 101.5 7.9 29 174-202 33-61 (296)
101 2dpy_A FLII, flagellum-specifi 98.7 1.8E-08 6.1E-13 109.3 7.0 151 173-331 154-317 (438)
102 2i3b_A HCR-ntpase, human cance 98.7 3.2E-08 1.1E-12 95.3 8.1 26 176-201 1-26 (189)
103 4b4t_L 26S protease subunit RP 98.7 3.7E-08 1.3E-12 106.5 9.4 29 173-201 212-240 (437)
104 2z4s_A Chromosomal replication 98.7 6.6E-08 2.3E-12 104.7 11.2 46 290-335 194-241 (440)
105 3jvv_A Twitching mobility prot 98.7 5E-08 1.7E-12 103.0 9.9 110 175-331 122-231 (356)
106 1nlf_A Regulatory protein REPA 98.7 2.9E-08 1E-12 100.3 7.8 43 289-331 132-181 (279)
107 4b4t_M 26S protease regulatory 98.6 2.2E-08 7.4E-13 108.3 6.2 29 173-201 212-240 (434)
108 1rj9_A FTSY, signal recognitio 98.6 1E-08 3.4E-13 106.1 3.3 76 175-261 101-181 (304)
109 2qnr_A Septin-2, protein NEDD5 98.6 1.3E-08 4.4E-13 104.8 4.0 134 178-331 20-167 (301)
110 2jeo_A Uridine-cytidine kinase 98.6 4.9E-08 1.7E-12 96.9 8.0 120 174-330 23-164 (245)
111 4b4t_I 26S protease regulatory 98.6 4E-08 1.4E-12 105.7 6.6 29 173-201 213-241 (437)
112 1n0w_A DNA repair protein RAD5 98.6 4.1E-07 1.4E-11 88.7 12.3 26 174-199 22-47 (243)
113 2ewv_A Twitching motility prot 98.5 1E-07 3.5E-12 101.0 8.1 111 174-331 134-244 (372)
114 3asz_A Uridine kinase; cytidin 98.5 4.1E-09 1.4E-13 101.5 -2.6 27 175-201 5-31 (211)
115 4b4t_H 26S protease regulatory 98.5 8.1E-08 2.8E-12 104.2 6.9 28 174-201 241-268 (467)
116 4b4t_K 26S protease regulatory 98.5 1.1E-07 3.8E-12 102.6 7.3 29 173-201 203-231 (428)
117 2cvh_A DNA repair and recombin 98.5 3.1E-07 1E-11 88.2 9.7 25 174-198 18-42 (220)
118 3bos_A Putative DNA replicatio 98.5 7.2E-08 2.4E-12 93.3 4.9 46 290-335 104-152 (242)
119 3lda_A DNA repair protein RAD5 98.4 1.8E-07 6.1E-12 100.2 6.1 39 160-201 165-205 (400)
120 2bbw_A Adenylate kinase 4, AK4 98.4 5.3E-08 1.8E-12 96.5 1.7 130 175-320 26-199 (246)
121 2gza_A Type IV secretion syste 98.4 3.9E-07 1.3E-11 96.2 8.4 112 174-330 173-286 (361)
122 2ce7_A Cell division protein F 98.4 4.4E-07 1.5E-11 99.3 8.8 27 175-201 48-74 (476)
123 1zp6_A Hypothetical protein AT 98.4 6.2E-08 2.1E-12 91.5 1.6 36 174-214 7-42 (191)
124 3co5_A Putative two-component 98.4 4.2E-07 1.4E-11 82.8 6.5 51 290-341 75-125 (143)
125 3e70_C DPA, signal recognition 98.3 3.7E-08 1.3E-12 102.9 -1.5 79 174-261 127-208 (328)
126 2obl_A ESCN; ATPase, hydrolase 98.3 8.1E-07 2.8E-11 93.4 8.5 140 174-332 69-229 (347)
127 3t15_A Ribulose bisphosphate c 98.3 1.3E-06 4.4E-11 89.3 9.2 28 174-201 34-61 (293)
128 3h4m_A Proteasome-activating n 98.3 5.9E-07 2E-11 90.2 6.4 27 175-201 50-76 (285)
129 2qz4_A Paraplegin; AAA+, SPG7, 98.3 1.6E-06 5.6E-11 85.5 9.1 28 174-201 37-64 (262)
130 1fnn_A CDC6P, cell division co 98.2 3E-06 1E-10 88.2 10.3 43 289-331 124-169 (389)
131 1lw7_A Transcriptional regulat 98.2 1.5E-06 5.1E-11 91.4 7.4 27 176-202 170-196 (365)
132 1ixz_A ATP-dependent metallopr 98.2 3.2E-06 1.1E-10 83.7 9.1 27 175-201 48-74 (254)
133 3cf0_A Transitional endoplasmi 98.2 3.3E-06 1.1E-10 86.4 8.8 28 174-201 47-74 (301)
134 3n70_A Transport activator; si 98.2 5.6E-06 1.9E-10 75.4 9.1 51 291-342 77-127 (145)
135 2x8a_A Nuclear valosin-contain 98.1 8.2E-06 2.8E-10 82.7 11.0 28 175-202 43-70 (274)
136 2chg_A Replication factor C sm 98.1 8.5E-06 2.9E-10 76.9 10.3 42 289-331 101-142 (226)
137 1xwi_A SKD1 protein; VPS4B, AA 98.1 3.2E-06 1.1E-10 87.6 7.2 27 174-200 43-69 (322)
138 2qag_C Septin-7; cell cycle, c 98.1 1.3E-06 4.3E-11 94.2 4.2 24 178-201 33-56 (418)
139 3m6a_A ATP-dependent protease 98.1 2.3E-06 7.9E-11 95.0 6.0 37 175-214 107-143 (543)
140 1iy2_A ATP-dependent metallopr 98.1 5.3E-06 1.8E-10 83.6 7.7 27 175-201 72-98 (278)
141 3eie_A Vacuolar protein sortin 98.1 3.8E-06 1.3E-10 86.7 6.5 28 174-201 49-76 (322)
142 2yhs_A FTSY, cell division pro 98.0 3.2E-06 1.1E-10 92.5 6.0 80 173-261 290-372 (503)
143 3cf2_A TER ATPase, transitiona 98.0 2.7E-06 9.4E-11 98.3 5.7 29 173-201 235-263 (806)
144 2bdt_A BH3686; alpha-beta prot 98.0 3.7E-07 1.3E-11 86.3 -1.4 24 176-199 2-25 (189)
145 2dhr_A FTSH; AAA+ protein, hex 98.0 8E-06 2.7E-10 89.8 8.7 28 174-201 62-89 (499)
146 3b9p_A CG5977-PA, isoform A; A 98.0 7E-06 2.4E-10 82.9 7.1 27 175-201 53-79 (297)
147 1f2t_B RAD50 ABC-ATPase; DNA d 98.0 3.4E-06 1.1E-10 78.1 4.2 43 289-331 80-123 (148)
148 1htw_A HI0065; nucleotide-bind 98.0 1.8E-06 6.3E-11 80.6 2.5 66 174-258 31-96 (158)
149 1lv7_A FTSH; alpha/beta domain 98.0 1E-05 3.5E-10 80.2 8.0 27 175-201 44-70 (257)
150 2p65_A Hypothetical protein PF 98.0 2.6E-06 8.7E-11 78.8 3.3 26 175-200 42-67 (187)
151 2qp9_X Vacuolar protein sortin 98.0 9.5E-06 3.2E-10 85.1 8.0 28 174-201 82-109 (355)
152 2qag_B Septin-6, protein NEDD5 98.0 1.7E-06 5.9E-11 93.2 1.5 27 174-200 38-66 (427)
153 2dr3_A UPF0273 protein PH0284; 97.9 3.2E-05 1.1E-09 75.2 10.3 43 290-332 128-174 (247)
154 1jbk_A CLPB protein; beta barr 97.9 5.2E-06 1.8E-10 76.6 4.3 26 175-200 42-67 (195)
155 2v1u_A Cell division control p 97.9 1.1E-05 3.9E-10 83.5 7.1 26 175-200 43-68 (387)
156 2bjv_A PSP operon transcriptio 97.9 2.3E-05 8E-10 77.9 9.1 48 290-337 100-157 (265)
157 3cf2_A TER ATPase, transitiona 97.9 7.5E-06 2.6E-10 94.6 5.7 29 173-201 508-536 (806)
158 1njg_A DNA polymerase III subu 97.9 5E-05 1.7E-09 72.3 10.3 42 289-331 125-166 (250)
159 3u61_B DNA polymerase accessor 97.9 3.8E-05 1.3E-09 78.6 10.0 60 290-364 105-165 (324)
160 3d8b_A Fidgetin-like protein 1 97.9 1.7E-05 5.9E-10 83.1 7.5 27 175-201 116-142 (357)
161 2zan_A Vacuolar protein sortin 97.8 1.4E-05 4.8E-10 86.4 6.3 27 174-200 165-191 (444)
162 2qby_A CDC6 homolog 1, cell di 97.8 5.7E-06 1.9E-10 85.6 2.9 27 175-201 44-70 (386)
163 3syl_A Protein CBBX; photosynt 97.8 2.4E-05 8.1E-10 79.3 7.4 27 174-200 65-91 (309)
164 1sxj_C Activator 1 40 kDa subu 97.8 3.2E-05 1.1E-09 80.1 8.3 60 290-364 110-169 (340)
165 3pvs_A Replication-associated 97.8 5.3E-05 1.8E-09 82.1 10.1 25 177-201 51-75 (447)
166 3hu3_A Transitional endoplasmi 97.8 2.3E-05 7.9E-10 86.0 7.2 28 174-201 236-263 (489)
167 3tr0_A Guanylate kinase, GMP k 97.8 1.2E-05 4.2E-10 76.3 3.9 27 175-201 6-32 (205)
168 3vfd_A Spastin; ATPase, microt 97.8 5.1E-05 1.8E-09 80.2 8.9 27 175-201 147-173 (389)
169 4fcw_A Chaperone protein CLPB; 97.8 2.4E-05 8.1E-10 79.2 5.9 43 291-333 120-172 (311)
170 1odf_A YGR205W, hypothetical 3 97.7 2E-05 6.8E-10 80.7 5.2 28 174-201 29-56 (290)
171 2zr9_A Protein RECA, recombina 97.7 4.1E-05 1.4E-09 80.4 7.2 27 174-200 59-85 (349)
172 3k1j_A LON protease, ATP-depen 97.7 0.00012 4.1E-09 82.2 11.4 28 175-202 59-86 (604)
173 1sxj_D Activator 1 41 kDa subu 97.7 1.9E-05 6.3E-10 81.3 4.2 59 290-363 133-191 (353)
174 1iqp_A RFCS; clamp loader, ext 97.7 0.00011 3.8E-09 74.4 9.9 60 289-363 109-168 (327)
175 1nij_A Hypothetical protein YJ 97.7 1E-05 3.5E-10 83.6 2.0 46 283-331 141-189 (318)
176 3c8u_A Fructokinase; YP_612366 97.7 1.7E-05 5.9E-10 76.4 3.4 42 174-215 20-61 (208)
177 1d2n_A N-ethylmaleimide-sensit 97.7 3.7E-05 1.2E-09 76.9 5.8 27 175-201 63-89 (272)
178 3a00_A Guanylate kinase, GMP k 97.7 1.7E-05 5.8E-10 75.0 2.9 26 176-201 1-26 (186)
179 1z6g_A Guanylate kinase; struc 97.6 1.9E-05 6.6E-10 77.0 3.3 28 174-201 21-48 (218)
180 3pfi_A Holliday junction ATP-d 97.6 0.00016 5.5E-09 74.3 10.0 27 175-201 54-80 (338)
181 1ojl_A Transcriptional regulat 97.6 6.3E-05 2.2E-09 77.2 6.8 49 291-339 97-155 (304)
182 1ypw_A Transitional endoplasmi 97.6 4.2E-05 1.4E-09 88.8 6.0 29 174-202 236-264 (806)
183 3te6_A Regulatory protein SIR3 97.6 0.00018 6.3E-09 74.6 10.3 26 175-200 44-69 (318)
184 1lvg_A Guanylate kinase, GMP k 97.6 2E-05 6.9E-10 75.6 2.6 27 175-201 3-29 (198)
185 3kta_B Chromosome segregation 97.6 5.6E-05 1.9E-09 71.7 5.3 41 289-329 85-126 (173)
186 1kgd_A CASK, peripheral plasma 97.5 4.3E-05 1.5E-09 71.9 3.9 28 174-201 3-30 (180)
187 3uk6_A RUVB-like 2; hexameric 97.5 0.00023 7.8E-09 73.8 9.7 27 175-201 69-95 (368)
188 1sxj_B Activator 1 37 kDa subu 97.5 0.00018 6.3E-09 72.6 8.3 60 290-364 107-166 (323)
189 2qby_B CDC6 homolog 3, cell di 97.5 0.00011 3.9E-09 76.2 6.4 26 175-200 44-69 (384)
190 1sxj_A Activator 1 95 kDa subu 97.5 0.00037 1.3E-08 76.6 10.7 27 175-201 76-102 (516)
191 3pih_A Uvrabc system protein A 97.4 6.5E-05 2.2E-09 88.1 4.5 54 277-330 458-525 (916)
192 2ygr_A Uvrabc system protein A 97.4 0.00014 4.7E-09 85.5 7.2 54 278-331 516-583 (993)
193 2r44_A Uncharacterized protein 97.4 0.0002 6.8E-09 73.5 7.6 35 176-213 46-80 (331)
194 3lnc_A Guanylate kinase, GMP k 97.4 4.6E-05 1.6E-09 74.4 2.5 28 174-201 25-53 (231)
195 3hr8_A Protein RECA; alpha and 97.4 0.00035 1.2E-08 73.6 8.9 28 174-201 59-86 (356)
196 1sq5_A Pantothenate kinase; P- 97.4 0.0001 3.6E-09 75.6 4.7 73 174-263 78-155 (308)
197 2v9p_A Replication protein E1; 97.4 7E-05 2.4E-09 77.3 3.2 28 173-200 123-150 (305)
198 2r6f_A Excinuclease ABC subuni 97.4 0.00013 4.5E-09 85.4 5.8 54 278-331 499-566 (972)
199 3pxi_A Negative regulator of g 97.4 0.00033 1.1E-08 80.5 9.1 45 290-334 579-633 (758)
200 1ypw_A Transitional endoplasmi 97.3 8.9E-06 3E-10 94.4 -4.3 28 174-201 509-536 (806)
201 3euj_A Chromosome partition pr 97.3 4.3E-05 1.5E-09 83.6 1.4 35 177-214 30-64 (483)
202 1ls1_A Signal recognition part 97.3 0.00018 6E-09 73.7 5.9 28 175-202 97-124 (295)
203 2j41_A Guanylate kinase; GMP, 97.3 0.00012 4E-09 69.4 4.2 27 175-201 5-31 (207)
204 2chq_A Replication factor C sm 97.3 7.3E-05 2.5E-09 75.4 2.9 61 289-364 101-161 (319)
205 2px0_A Flagellar biosynthesis 97.3 0.00018 6.1E-09 73.8 5.5 27 175-201 104-130 (296)
206 3tau_A Guanylate kinase, GMP k 97.3 0.00013 4.5E-09 70.3 4.2 29 174-202 6-34 (208)
207 4eun_A Thermoresistant glucoki 97.3 9.7E-05 3.3E-09 70.5 3.2 27 174-200 27-53 (200)
208 2vf7_A UVRA2, excinuclease ABC 97.3 0.00018 6.2E-09 83.6 6.0 55 277-331 373-441 (842)
209 1hqc_A RUVB; extended AAA-ATPa 97.3 0.00024 8.1E-09 72.2 6.2 27 175-201 37-63 (324)
210 3nbx_X ATPase RAVA; AAA+ ATPas 97.3 0.00019 6.6E-09 78.9 5.3 26 176-201 41-66 (500)
211 3uie_A Adenylyl-sulfate kinase 97.2 0.00016 5.4E-09 69.0 3.3 28 174-201 23-50 (200)
212 3kta_A Chromosome segregation 97.2 0.00021 7.1E-09 66.7 3.7 26 177-202 27-52 (182)
213 1qvr_A CLPB protein; coiled co 97.2 0.00028 9.7E-09 82.2 5.7 25 177-201 589-613 (854)
214 1jr3_A DNA polymerase III subu 97.2 0.00035 1.2E-08 72.2 5.8 61 289-364 118-178 (373)
215 1kag_A SKI, shikimate kinase I 97.2 0.00018 6.1E-09 66.4 3.1 26 176-201 4-29 (173)
216 1v5w_A DMC1, meiotic recombina 97.1 0.0025 8.5E-08 66.4 12.0 36 161-199 110-145 (343)
217 1vma_A Cell division protein F 97.1 0.0016 5.6E-08 67.0 10.5 29 174-202 102-130 (306)
218 3ney_A 55 kDa erythrocyte memb 97.1 0.00026 9.1E-09 68.5 4.0 28 174-201 17-44 (197)
219 1r6b_X CLPA protein; AAA+, N-t 97.1 0.0013 4.6E-08 75.3 10.5 47 290-336 557-613 (758)
220 2orw_A Thymidine kinase; TMTK, 97.1 0.00021 7.3E-09 67.9 3.1 63 290-363 76-138 (184)
221 2r6a_A DNAB helicase, replicat 97.1 0.0022 7.6E-08 69.2 11.6 28 174-201 201-228 (454)
222 2oap_1 GSPE-2, type II secreti 97.1 0.00029 1E-08 77.6 4.4 37 175-214 259-295 (511)
223 1knq_A Gluconate kinase; ALFA/ 97.1 0.00031 1.1E-08 65.0 4.0 26 175-200 7-32 (175)
224 2vp4_A Deoxynucleoside kinase; 97.1 0.00025 8.5E-09 69.4 3.3 27 173-199 17-43 (230)
225 1u0l_A Probable GTPase ENGC; p 97.1 0.00026 8.8E-09 72.5 3.5 28 175-202 168-195 (301)
226 1qhl_A Protein (cell division 97.0 6.1E-05 2.1E-09 74.5 -1.3 35 177-214 28-62 (227)
227 2ius_A DNA translocase FTSK; n 97.0 0.0013 4.3E-08 72.5 8.9 72 290-371 296-373 (512)
228 1p9r_A General secretion pathw 97.0 0.00026 8.9E-09 76.1 3.4 28 175-202 166-193 (418)
229 1u0j_A DNA replication protein 97.0 0.00053 1.8E-08 69.4 5.1 27 175-201 103-129 (267)
230 1in4_A RUVB, holliday junction 97.0 0.00026 8.9E-09 73.3 2.9 27 175-201 50-76 (334)
231 2b8t_A Thymidine kinase; deoxy 97.0 0.00035 1.2E-08 68.9 3.3 38 290-331 89-126 (223)
232 1um8_A ATP-dependent CLP prote 97.0 0.00087 3E-08 70.2 6.5 27 175-201 71-97 (376)
233 1w4r_A Thymidine kinase; type 96.9 0.0013 4.5E-08 63.5 7.0 61 290-362 91-151 (195)
234 2qm8_A GTPase/ATPase; G protei 96.9 0.00038 1.3E-08 72.6 3.4 36 174-210 53-88 (337)
235 4ad8_A DNA repair protein RECN 96.9 0.00049 1.7E-08 75.7 4.2 47 283-330 396-457 (517)
236 2vhj_A Ntpase P4, P4; non- hyd 96.9 0.0029 9.8E-08 65.8 9.7 25 175-199 122-146 (331)
237 2rcn_A Probable GTPase ENGC; Y 96.9 0.00053 1.8E-08 72.3 4.2 28 175-202 214-242 (358)
238 1zu4_A FTSY; GTPase, signal re 96.9 0.0016 5.4E-08 67.5 7.7 29 174-202 103-131 (320)
239 1qvr_A CLPB protein; coiled co 96.9 0.0013 4.3E-08 76.8 7.6 26 175-200 190-215 (854)
240 2f1r_A Molybdopterin-guanine d 96.9 0.00032 1.1E-08 66.2 2.0 38 177-214 3-40 (171)
241 1rz3_A Hypothetical protein rb 96.8 0.00059 2E-08 65.2 3.5 28 174-201 20-47 (201)
242 1g5t_A COB(I)alamin adenosyltr 96.8 0.00046 1.6E-08 66.7 2.6 45 289-334 119-166 (196)
243 2qt1_A Nicotinamide riboside k 96.8 0.00092 3.1E-08 63.7 4.4 28 174-201 19-46 (207)
244 1a5t_A Delta prime, HOLB; zinc 96.8 0.0043 1.5E-07 64.1 9.8 61 289-364 107-167 (334)
245 4e22_A Cytidylate kinase; P-lo 96.8 0.00072 2.5E-08 67.2 3.8 24 175-198 26-49 (252)
246 2yv5_A YJEQ protein; hydrolase 96.8 0.00079 2.7E-08 69.0 4.1 72 175-257 164-240 (302)
247 1w1w_A Structural maintenance 96.7 0.0011 3.8E-08 70.9 5.2 41 290-330 355-396 (430)
248 1f2t_A RAD50 ABC-ATPase; DNA d 96.7 0.00086 2.9E-08 61.5 3.6 25 176-200 23-47 (149)
249 3tqc_A Pantothenate kinase; bi 96.7 0.00087 3E-08 69.6 3.8 28 174-201 90-117 (321)
250 3auy_A DNA double-strand break 96.7 0.0011 3.6E-08 69.8 4.3 41 289-330 303-345 (371)
251 1t9h_A YLOQ, probable GTPase E 96.6 0.00039 1.3E-08 71.8 0.9 28 175-202 172-199 (307)
252 2z43_A DNA repair and recombin 96.6 0.008 2.7E-07 61.9 10.6 27 174-200 105-131 (324)
253 1w1w_A Structural maintenance 96.6 0.001 3.5E-08 71.2 4.1 28 175-202 25-52 (430)
254 3pxg_A Negative regulator of g 96.6 0.0016 5.5E-08 70.7 5.5 26 175-200 200-225 (468)
255 1w5s_A Origin recognition comp 96.6 0.0012 4.1E-08 69.0 4.3 27 175-201 49-77 (412)
256 3vaa_A Shikimate kinase, SK; s 96.6 0.00099 3.4E-08 63.4 3.2 27 175-201 24-50 (199)
257 1u94_A RECA protein, recombina 96.6 0.0061 2.1E-07 64.0 9.5 27 174-200 61-87 (356)
258 1cke_A CK, MSSA, protein (cyti 96.6 0.0011 3.7E-08 63.8 3.5 26 176-201 5-30 (227)
259 3cmu_A Protein RECA, recombina 96.5 0.0038 1.3E-07 78.2 8.5 39 174-215 1425-1463(2050)
260 3kl4_A SRP54, signal recogniti 96.5 0.0057 1.9E-07 66.0 8.8 27 175-201 96-122 (433)
261 1pui_A ENGB, probable GTP-bind 96.5 0.00077 2.6E-08 63.7 1.7 27 174-200 24-50 (210)
262 2qor_A Guanylate kinase; phosp 96.5 0.0014 4.6E-08 62.7 3.5 27 175-201 11-37 (204)
263 1svm_A Large T antigen; AAA+ f 96.5 0.0015 5.2E-08 69.2 4.0 28 174-201 167-194 (377)
264 1jjv_A Dephospho-COA kinase; P 96.4 0.0015 5E-08 62.2 3.4 22 177-198 3-24 (206)
265 1oix_A RAS-related protein RAB 96.4 0.0016 5.4E-08 61.2 3.5 25 177-201 30-54 (191)
266 2f9l_A RAB11B, member RAS onco 96.4 0.0016 5.4E-08 61.4 3.1 24 177-200 6-29 (199)
267 2if2_A Dephospho-COA kinase; a 96.4 0.0017 5.9E-08 61.5 3.3 21 178-198 3-23 (204)
268 2pez_A Bifunctional 3'-phospho 96.3 0.002 6.8E-08 59.9 3.7 27 175-201 4-30 (179)
269 2xau_A PRE-mRNA-splicing facto 96.3 0.0047 1.6E-07 71.3 7.5 25 176-200 109-133 (773)
270 4akg_A Glutathione S-transfera 96.3 0.0097 3.3E-07 76.8 10.6 37 176-214 1267-1303(2695)
271 3t61_A Gluconokinase; PSI-biol 96.3 0.0019 6.6E-08 61.2 3.3 27 175-201 17-43 (202)
272 3qks_A DNA double-strand break 96.3 0.0022 7.4E-08 61.8 3.6 25 176-200 23-47 (203)
273 2fna_A Conserved hypothetical 96.3 0.007 2.4E-07 61.4 7.6 25 177-201 31-55 (357)
274 2o5v_A DNA replication and rep 96.2 0.002 6.7E-08 67.9 3.2 22 178-199 28-49 (359)
275 1qhx_A CPT, protein (chloramph 96.2 0.0025 8.7E-08 58.7 3.6 26 176-201 3-28 (178)
276 2r62_A Cell division protease 96.2 0.0011 3.9E-08 65.5 1.3 27 175-201 43-69 (268)
277 2yvu_A Probable adenylyl-sulfa 96.1 0.0031 1.1E-07 59.0 3.8 28 174-201 11-38 (186)
278 3e2i_A Thymidine kinase; Zn-bi 96.1 0.0055 1.9E-07 60.1 5.5 62 289-361 100-161 (219)
279 3llm_A ATP-dependent RNA helic 96.1 0.022 7.5E-07 55.4 9.9 23 175-197 75-97 (235)
280 1xp8_A RECA protein, recombina 96.1 0.0097 3.3E-07 62.7 7.6 27 174-200 72-98 (366)
281 3cr8_A Sulfate adenylyltranfer 96.0 0.0021 7.1E-08 71.5 2.3 29 174-202 367-395 (552)
282 3pxi_A Negative regulator of g 96.0 0.0062 2.1E-07 69.9 6.0 26 175-200 200-225 (758)
283 1y63_A LMAJ004144AAA protein; 96.0 0.0044 1.5E-07 58.1 3.9 26 174-199 8-33 (184)
284 3kb2_A SPBC2 prophage-derived 95.9 0.004 1.4E-07 56.7 3.3 25 177-201 2-26 (173)
285 1m7g_A Adenylylsulfate kinase; 95.9 0.0041 1.4E-07 59.6 3.3 28 174-201 23-50 (211)
286 2i1q_A DNA repair and recombin 95.9 0.04 1.4E-06 56.3 11.0 26 174-199 96-121 (322)
287 3nwj_A ATSK2; P loop, shikimat 95.8 0.0039 1.3E-07 62.3 3.2 26 176-201 48-73 (250)
288 2o5v_A DNA replication and rep 95.8 0.0038 1.3E-07 65.7 3.2 38 289-329 291-329 (359)
289 3cm0_A Adenylate kinase; ATP-b 95.8 0.0042 1.4E-07 57.7 3.1 26 175-200 3-28 (186)
290 2zts_A Putative uncharacterize 95.8 0.017 5.6E-07 55.8 7.5 24 174-197 28-51 (251)
291 2j9r_A Thymidine kinase; TK1, 95.8 0.0098 3.3E-07 58.2 5.7 63 290-363 101-163 (214)
292 1ly1_A Polynucleotide kinase; 95.8 0.0051 1.7E-07 56.4 3.5 23 176-198 2-24 (181)
293 2r8r_A Sensor protein; KDPD, P 95.7 0.005 1.7E-07 60.8 3.4 43 290-332 84-128 (228)
294 2rhm_A Putative kinase; P-loop 95.7 0.0056 1.9E-07 57.0 3.6 26 175-200 4-29 (193)
295 2gj8_A MNME, tRNA modification 95.7 0.0055 1.9E-07 56.5 3.4 26 175-200 3-28 (172)
296 1xx6_A Thymidine kinase; NESG, 95.7 0.0097 3.3E-07 57.0 5.0 37 290-330 81-117 (191)
297 2wji_A Ferrous iron transport 95.6 0.0052 1.8E-07 56.0 2.9 24 177-200 4-27 (165)
298 1ni3_A YCHF GTPase, YCHF GTP-b 95.6 0.01 3.4E-07 63.2 5.4 37 289-325 138-178 (392)
299 3iij_A Coilin-interacting nucl 95.6 0.0069 2.3E-07 56.2 3.7 26 175-200 10-35 (180)
300 3lw7_A Adenylate kinase relate 95.6 0.0059 2E-07 55.2 3.2 20 177-196 2-21 (179)
301 3trf_A Shikimate kinase, SK; a 95.6 0.0064 2.2E-07 56.5 3.4 26 176-201 5-30 (185)
302 2orv_A Thymidine kinase; TP4A 95.6 0.014 4.6E-07 57.9 5.9 60 290-361 90-149 (234)
303 1kht_A Adenylate kinase; phosp 95.6 0.0066 2.2E-07 56.2 3.5 26 176-201 3-28 (192)
304 1ofh_A ATP-dependent HSL prote 95.6 0.0054 1.8E-07 61.4 3.0 27 175-201 49-75 (310)
305 2www_A Methylmalonic aciduria 95.6 0.0059 2E-07 63.7 3.4 27 175-201 73-99 (349)
306 1q3t_A Cytidylate kinase; nucl 95.5 0.0074 2.5E-07 58.9 3.8 27 174-200 14-40 (236)
307 3cmw_A Protein RECA, recombina 95.5 0.019 6.4E-07 71.3 8.1 29 173-201 729-757 (1706)
308 2p5t_B PEZT; postsegregational 95.5 0.0054 1.8E-07 60.7 2.8 28 174-201 30-57 (253)
309 1uf9_A TT1252 protein; P-loop, 95.5 0.0085 2.9E-07 56.2 3.8 25 175-199 7-31 (203)
310 2wjg_A FEOB, ferrous iron tran 95.4 0.0084 2.9E-07 55.2 3.5 24 176-199 7-30 (188)
311 4eaq_A DTMP kinase, thymidylat 95.4 0.0087 3E-07 58.6 3.8 28 174-201 24-51 (229)
312 2vli_A Antibiotic resistance p 95.4 0.006 2.1E-07 56.4 2.5 27 175-201 4-30 (183)
313 1ex7_A Guanylate kinase; subst 95.4 0.0076 2.6E-07 57.6 3.2 22 179-200 4-25 (186)
314 2v54_A DTMP kinase, thymidylat 95.3 0.01 3.6E-07 55.7 4.0 26 175-200 3-28 (204)
315 2zej_A Dardarin, leucine-rich 95.3 0.0068 2.3E-07 56.2 2.6 22 178-199 4-25 (184)
316 2jaq_A Deoxyguanosine kinase; 95.3 0.0087 3E-07 56.0 3.4 24 178-201 2-25 (205)
317 3e1s_A Exodeoxyribonuclease V, 95.3 0.014 4.9E-07 65.0 5.7 26 176-201 204-229 (574)
318 2c95_A Adenylate kinase 1; tra 95.3 0.0097 3.3E-07 55.5 3.6 27 175-201 8-34 (196)
319 1via_A Shikimate kinase; struc 95.3 0.0085 2.9E-07 55.3 3.1 24 178-201 6-29 (175)
320 1tev_A UMP-CMP kinase; ploop, 95.3 0.0096 3.3E-07 55.2 3.5 25 176-200 3-27 (196)
321 3cmu_A Protein RECA, recombina 95.3 0.038 1.3E-06 69.5 9.6 26 174-199 1079-1104(2050)
322 2plr_A DTMP kinase, probable t 95.2 0.0095 3.2E-07 56.1 3.3 26 176-201 4-29 (213)
323 1gvn_B Zeta; postsegregational 95.2 0.0098 3.4E-07 60.3 3.6 28 174-201 31-58 (287)
324 1vht_A Dephospho-COA kinase; s 95.2 0.011 3.9E-07 56.5 3.8 23 176-198 4-26 (218)
325 3hws_A ATP-dependent CLP prote 95.2 0.0095 3.2E-07 62.0 3.5 27 175-201 50-76 (363)
326 2q6t_A DNAB replication FORK h 95.1 0.13 4.3E-06 55.3 12.2 28 173-200 197-224 (444)
327 2ze6_A Isopentenyl transferase 95.1 0.01 3.6E-07 58.9 3.4 25 177-201 2-26 (253)
328 3auy_A DNA double-strand break 95.1 0.011 3.6E-07 62.1 3.5 43 452-497 302-345 (371)
329 1nks_A Adenylate kinase; therm 95.1 0.011 3.7E-07 54.7 3.2 25 177-201 2-26 (194)
330 1ukz_A Uridylate kinase; trans 95.1 0.015 5E-07 54.9 4.2 27 174-200 13-39 (203)
331 2c9o_A RUVB-like 1; hexameric 95.1 0.0096 3.3E-07 64.2 3.2 27 175-201 62-88 (456)
332 2wwf_A Thymidilate kinase, put 95.1 0.014 4.7E-07 55.2 3.9 26 175-200 9-34 (212)
333 2cdn_A Adenylate kinase; phosp 95.1 0.015 5E-07 55.0 4.0 28 174-201 18-45 (201)
334 1nn5_A Similar to deoxythymidy 95.0 0.013 4.6E-07 55.3 3.7 26 175-200 8-33 (215)
335 2bwj_A Adenylate kinase 5; pho 95.0 0.012 4.3E-07 54.8 3.4 26 176-201 12-37 (199)
336 1ny5_A Transcriptional regulat 95.0 0.061 2.1E-06 56.8 9.1 55 291-345 232-296 (387)
337 3cmw_A Protein RECA, recombina 95.0 0.032 1.1E-06 69.2 7.8 78 428-505 1460-1577(1706)
338 3upu_A ATP-dependent DNA helic 95.0 0.037 1.3E-06 59.6 7.5 24 178-201 47-70 (459)
339 1np6_A Molybdopterin-guanine d 95.0 0.013 4.4E-07 55.3 3.4 26 176-201 6-31 (174)
340 3r20_A Cytidylate kinase; stru 94.9 0.012 4.1E-07 58.2 3.1 27 175-201 8-34 (233)
341 1qf9_A UMP/CMP kinase, protein 94.9 0.014 4.7E-07 54.0 3.4 26 175-200 5-30 (194)
342 1zak_A Adenylate kinase; ATP:A 94.8 0.014 4.6E-07 56.2 3.2 27 175-201 4-30 (222)
343 1gtv_A TMK, thymidylate kinase 94.8 0.0067 2.3E-07 57.5 0.9 24 178-201 2-25 (214)
344 1udx_A The GTP-binding protein 94.8 0.0092 3.1E-07 64.0 2.0 26 175-200 156-181 (416)
345 3dm5_A SRP54, signal recogniti 94.8 0.18 6.1E-06 54.4 12.0 27 175-201 99-125 (443)
346 1zd8_A GTP:AMP phosphotransfer 94.7 0.016 5.5E-07 55.9 3.4 27 175-201 6-32 (227)
347 1aky_A Adenylate kinase; ATP:A 94.7 0.018 6.1E-07 55.3 3.6 27 175-201 3-29 (220)
348 1g41_A Heat shock protein HSLU 94.6 0.015 5.2E-07 62.8 3.3 28 175-202 49-76 (444)
349 1tue_A Replication protein E1; 94.6 0.014 4.9E-07 56.8 2.7 26 176-201 58-83 (212)
350 1ega_A Protein (GTP-binding pr 94.6 0.016 5.4E-07 59.1 3.2 23 177-199 9-31 (301)
351 1e6c_A Shikimate kinase; phosp 94.6 0.016 5.4E-07 53.0 2.9 25 177-201 3-27 (173)
352 2f6r_A COA synthase, bifunctio 94.6 0.023 7.9E-07 57.3 4.3 25 174-198 73-97 (281)
353 2iyv_A Shikimate kinase, SK; t 94.5 0.017 5.7E-07 53.6 2.9 25 177-201 3-27 (184)
354 3iev_A GTP-binding protein ERA 94.5 0.016 5.5E-07 59.2 2.9 27 173-199 7-33 (308)
355 1zuh_A Shikimate kinase; alpha 94.5 0.021 7.1E-07 52.2 3.3 26 176-201 7-32 (168)
356 3fb4_A Adenylate kinase; psych 94.5 0.018 6.1E-07 54.8 3.0 24 178-201 2-25 (216)
357 3ake_A Cytidylate kinase; CMP 94.5 0.021 7.3E-07 53.6 3.5 24 178-201 4-27 (208)
358 2p67_A LAO/AO transport system 94.4 0.018 6.2E-07 59.7 3.2 27 175-201 55-81 (341)
359 3umf_A Adenylate kinase; rossm 94.4 0.026 8.8E-07 55.2 4.1 27 174-200 27-53 (217)
360 3lxx_A GTPase IMAP family memb 94.4 0.019 6.5E-07 55.8 3.1 26 176-201 29-54 (239)
361 2z0h_A DTMP kinase, thymidylat 94.4 0.021 7E-07 53.2 3.2 23 178-200 2-24 (197)
362 3tlx_A Adenylate kinase 2; str 94.4 0.024 8.1E-07 55.8 3.7 26 175-200 28-53 (243)
363 3k53_A Ferrous iron transport 94.3 0.019 6.5E-07 57.2 3.0 24 177-200 4-27 (271)
364 3dl0_A Adenylate kinase; phosp 94.3 0.02 6.8E-07 54.6 3.0 24 178-201 2-25 (216)
365 2pbr_A DTMP kinase, thymidylat 94.2 0.024 8.1E-07 52.5 3.3 23 178-200 2-24 (195)
366 1g8p_A Magnesium-chelatase 38 94.2 0.011 3.7E-07 60.4 1.0 25 177-201 46-70 (350)
367 1xjc_A MOBB protein homolog; s 94.2 0.023 7.9E-07 53.4 3.1 26 176-201 4-29 (169)
368 1z2a_A RAS-related protein RAB 94.2 0.024 8E-07 50.7 3.1 23 177-199 6-28 (168)
369 2ce2_X GTPase HRAS; signaling 94.2 0.024 8.1E-07 50.2 3.0 22 178-199 5-26 (166)
370 4ad8_A DNA repair protein RECN 94.2 0.011 3.9E-07 64.7 1.0 45 450-497 411-457 (517)
371 2ged_A SR-beta, signal recogni 94.2 0.031 1E-06 51.7 3.8 25 176-200 48-72 (193)
372 2nzj_A GTP-binding protein REM 94.1 0.024 8.1E-07 51.1 3.0 23 177-199 5-27 (175)
373 1kao_A RAP2A; GTP-binding prot 94.1 0.026 8.9E-07 50.1 3.1 23 177-199 4-26 (167)
374 2dyk_A GTP-binding protein; GT 94.1 0.028 9.7E-07 49.9 3.4 23 178-200 3-25 (161)
375 3a4m_A L-seryl-tRNA(SEC) kinas 94.1 0.028 9.5E-07 55.8 3.6 25 176-200 4-28 (260)
376 2pt5_A Shikimate kinase, SK; a 94.1 0.027 9.3E-07 51.2 3.3 24 178-201 2-25 (168)
377 2erx_A GTP-binding protein DI- 94.1 0.026 9E-07 50.5 3.1 23 177-199 4-26 (172)
378 2lkc_A Translation initiation 94.1 0.036 1.2E-06 50.2 4.0 25 175-199 7-31 (178)
379 2ga8_A Hypothetical 39.9 kDa p 94.1 0.022 7.6E-07 59.8 2.9 25 177-201 25-49 (359)
380 1u8z_A RAS-related protein RAL 94.1 0.026 9E-07 50.1 3.1 23 177-199 5-27 (168)
381 1z0j_A RAB-22, RAS-related pro 94.0 0.028 9.7E-07 50.2 3.1 24 177-200 7-30 (170)
382 1ek0_A Protein (GTP-binding pr 93.9 0.029 9.8E-07 50.1 3.1 23 178-200 5-27 (170)
383 4akg_A Glutathione S-transfera 93.9 0.25 8.4E-06 64.1 12.6 27 175-201 644-670 (2695)
384 3q72_A GTP-binding protein RAD 93.9 0.023 7.7E-07 50.9 2.3 23 178-200 4-26 (166)
385 1fzq_A ADP-ribosylation factor 93.9 0.028 9.7E-07 51.9 3.1 25 175-199 15-39 (181)
386 1uj2_A Uridine-cytidine kinase 93.9 0.032 1.1E-06 54.9 3.7 27 175-201 21-47 (252)
387 2fn4_A P23, RAS-related protei 93.9 0.035 1.2E-06 50.2 3.6 24 176-199 9-32 (181)
388 1g16_A RAS-related protein SEC 93.9 0.029 9.9E-07 50.2 3.0 23 177-199 4-26 (170)
389 1c1y_A RAS-related protein RAP 93.9 0.03 1E-06 50.0 3.1 22 178-199 5-26 (167)
390 1wms_A RAB-9, RAB9, RAS-relate 93.9 0.03 1E-06 50.7 3.1 23 177-199 8-30 (177)
391 1ak2_A Adenylate kinase isoenz 93.9 0.035 1.2E-06 53.9 3.8 27 175-201 15-41 (233)
392 1z08_A RAS-related protein RAB 93.9 0.03 1E-06 50.2 3.1 23 177-199 7-29 (170)
393 1ky3_A GTP-binding protein YPT 93.8 0.031 1.1E-06 50.6 3.1 25 176-200 8-32 (182)
394 3pqc_A Probable GTP-binding pr 93.8 0.038 1.3E-06 50.7 3.8 25 176-200 23-47 (195)
395 1svi_A GTP-binding protein YSX 93.8 0.038 1.3E-06 51.0 3.8 25 175-199 22-46 (195)
396 4a1f_A DNAB helicase, replicat 93.8 0.13 4.4E-06 53.6 8.1 27 174-200 44-70 (338)
397 3q85_A GTP-binding protein REM 93.8 0.031 1E-06 50.2 2.9 22 178-199 4-25 (169)
398 1mky_A Probable GTP-binding pr 93.7 0.028 9.7E-07 60.2 3.0 25 176-200 180-204 (439)
399 1r2q_A RAS-related protein RAB 93.7 0.033 1.1E-06 49.7 3.1 23 177-199 7-29 (170)
400 3bc1_A RAS-related protein RAB 93.7 0.034 1.2E-06 50.8 3.1 23 177-199 12-34 (195)
401 1ltq_A Polynucleotide kinase; 93.6 0.036 1.2E-06 55.6 3.5 24 176-199 2-25 (301)
402 3tw8_B RAS-related protein RAB 93.6 0.029 9.8E-07 50.8 2.5 23 177-199 10-32 (181)
403 3clv_A RAB5 protein, putative; 93.6 0.036 1.2E-06 50.9 3.1 24 176-199 7-30 (208)
404 2oil_A CATX-8, RAS-related pro 93.5 0.036 1.2E-06 51.2 3.1 23 177-199 26-48 (193)
405 4bas_A ADP-ribosylation factor 93.5 0.031 1.1E-06 51.7 2.5 25 175-199 16-40 (199)
406 1r8s_A ADP-ribosylation factor 93.5 0.039 1.3E-06 49.2 3.1 22 178-199 2-23 (164)
407 4dsu_A GTPase KRAS, isoform 2B 93.5 0.039 1.3E-06 50.4 3.1 23 177-199 5-27 (189)
408 2cxx_A Probable GTP-binding pr 93.5 0.034 1.1E-06 50.9 2.7 22 178-199 3-24 (190)
409 2hxs_A RAB-26, RAS-related pro 93.5 0.04 1.4E-06 49.8 3.2 23 177-199 7-29 (178)
410 2y8e_A RAB-protein 6, GH09086P 93.4 0.039 1.3E-06 49.8 3.0 23 177-199 15-37 (179)
411 3b1v_A Ferrous iron uptake tra 93.4 0.035 1.2E-06 55.8 3.0 23 177-199 4-26 (272)
412 1z0f_A RAB14, member RAS oncog 93.4 0.041 1.4E-06 49.7 3.1 24 177-200 16-39 (179)
413 1m2o_B GTP-binding protein SAR 93.4 0.039 1.3E-06 51.4 3.0 22 177-198 24-45 (190)
414 3be4_A Adenylate kinase; malar 93.4 0.043 1.5E-06 52.6 3.4 25 176-200 5-29 (217)
415 2grj_A Dephospho-COA kinase; T 93.4 0.041 1.4E-06 52.5 3.2 25 176-200 12-36 (192)
416 2xb4_A Adenylate kinase; ATP-b 93.4 0.042 1.4E-06 53.1 3.3 23 178-200 2-24 (223)
417 1f6b_A SAR1; gtpases, N-termin 93.3 0.028 9.5E-07 52.9 1.9 22 177-198 26-47 (198)
418 1e4v_A Adenylate kinase; trans 93.3 0.038 1.3E-06 52.7 3.0 23 178-200 2-24 (214)
419 2a9k_A RAS-related protein RAL 93.3 0.042 1.4E-06 50.0 3.1 24 176-199 18-41 (187)
420 3tqf_A HPR(Ser) kinase; transf 93.3 0.044 1.5E-06 52.0 3.3 24 175-198 15-38 (181)
421 2qag_A Septin-2, protein NEDD5 93.3 0.031 1E-06 58.6 2.4 23 178-200 39-61 (361)
422 1upt_A ARL1, ADP-ribosylation 93.3 0.052 1.8E-06 48.6 3.7 24 176-199 7-30 (171)
423 3t1o_A Gliding protein MGLA; G 93.3 0.046 1.6E-06 50.2 3.4 25 177-201 15-39 (198)
424 2qtf_A Protein HFLX, GTP-bindi 93.3 0.036 1.2E-06 58.2 2.9 25 177-201 180-204 (364)
425 1moz_A ARL1, ADP-ribosylation 93.3 0.031 1E-06 51.0 2.1 24 175-198 17-40 (183)
426 2ffh_A Protein (FFH); SRP54, s 93.3 0.036 1.2E-06 59.6 2.9 28 175-202 97-124 (425)
427 2bme_A RAB4A, RAS-related prot 93.3 0.042 1.4E-06 50.2 3.0 23 177-199 11-33 (186)
428 3con_A GTPase NRAS; structural 93.2 0.043 1.5E-06 50.5 3.1 23 177-199 22-44 (190)
429 2g6b_A RAS-related protein RAB 93.2 0.046 1.6E-06 49.6 3.1 24 176-199 10-33 (180)
430 2gno_A DNA polymerase III, gam 93.2 0.075 2.6E-06 54.4 5.1 41 289-330 81-121 (305)
431 2efe_B Small GTP-binding prote 93.2 0.046 1.6E-06 49.6 3.1 23 177-199 13-35 (181)
432 3io5_A Recombination and repai 93.2 0.15 5.1E-06 52.9 7.2 22 175-197 28-49 (333)
433 3crm_A TRNA delta(2)-isopenten 93.1 0.054 1.8E-06 56.1 3.9 26 176-201 5-30 (323)
434 1m7b_A RND3/RHOE small GTP-bin 93.1 0.046 1.6E-06 50.3 3.0 23 177-199 8-30 (184)
435 1nrj_B SR-beta, signal recogni 93.1 0.058 2E-06 51.0 3.8 25 176-200 12-36 (218)
436 2gf9_A RAS-related protein RAB 93.1 0.048 1.6E-06 50.3 3.1 23 177-199 23-45 (189)
437 3ice_A Transcription terminati 93.0 0.054 1.9E-06 57.7 3.8 27 174-200 172-198 (422)
438 2bov_A RAla, RAS-related prote 93.0 0.048 1.6E-06 50.7 3.1 23 177-199 15-37 (206)
439 2fg5_A RAB-22B, RAS-related pr 93.0 0.049 1.7E-06 50.6 3.1 24 177-200 24-47 (192)
440 1mh1_A RAC1; GTP-binding, GTPa 93.0 0.05 1.7E-06 49.5 3.1 23 177-199 6-28 (186)
441 3zvl_A Bifunctional polynucleo 93.0 0.063 2.2E-06 57.2 4.3 27 174-200 256-282 (416)
442 3ihw_A Centg3; RAS, centaurin, 93.0 0.051 1.7E-06 50.4 3.1 23 177-199 21-43 (184)
443 1vg8_A RAS-related protein RAB 92.9 0.051 1.7E-06 50.6 3.1 25 176-200 8-32 (207)
444 3kkq_A RAS-related protein M-R 92.9 0.061 2.1E-06 49.1 3.6 23 177-199 19-41 (183)
445 2ocp_A DGK, deoxyguanosine kin 92.9 0.06 2E-06 52.4 3.7 26 176-201 2-27 (241)
446 2qmh_A HPR kinase/phosphorylas 92.9 0.05 1.7E-06 52.7 3.0 25 175-199 33-57 (205)
447 3tkl_A RAS-related protein RAB 92.9 0.052 1.8E-06 50.0 3.1 23 177-199 17-39 (196)
448 2h92_A Cytidylate kinase; ross 92.8 0.052 1.8E-06 51.7 3.0 25 176-200 3-27 (219)
449 2gf0_A GTP-binding protein DI- 92.8 0.054 1.8E-06 50.0 3.1 24 176-199 8-31 (199)
450 2cjw_A GTP-binding protein GEM 92.8 0.054 1.8E-06 50.7 3.1 23 177-199 7-29 (192)
451 3bwd_D RAC-like GTP-binding pr 92.8 0.056 1.9E-06 49.1 3.1 24 176-199 8-31 (182)
452 3iby_A Ferrous iron transport 92.8 0.056 1.9E-06 53.7 3.3 22 178-199 3-24 (256)
453 2qu8_A Putative nucleolar GTP- 92.7 0.07 2.4E-06 51.2 3.9 25 175-199 28-52 (228)
454 1q57_A DNA primase/helicase; d 92.7 0.74 2.5E-05 49.9 12.5 28 173-200 239-266 (503)
455 1zbd_A Rabphilin-3A; G protein 92.7 0.055 1.9E-06 50.4 3.0 23 177-199 9-31 (203)
456 1z06_A RAS-related protein RAB 92.7 0.057 2E-06 49.8 3.1 23 177-199 21-43 (189)
457 3dz8_A RAS-related protein RAB 92.7 0.056 1.9E-06 50.1 3.0 24 177-200 24-47 (191)
458 1a7j_A Phosphoribulokinase; tr 92.7 0.032 1.1E-06 56.6 1.5 25 176-200 5-29 (290)
459 2h17_A ADP-ribosylation factor 92.7 0.055 1.9E-06 49.6 2.9 24 176-199 21-44 (181)
460 2il1_A RAB12; G-protein, GDP, 92.7 0.045 1.5E-06 50.9 2.3 23 177-199 27-49 (192)
461 1ksh_A ARF-like protein 2; sma 92.6 0.053 1.8E-06 49.7 2.7 25 176-200 18-42 (186)
462 1zd9_A ADP-ribosylation factor 92.6 0.059 2E-06 49.8 3.1 23 177-199 23-45 (188)
463 3oes_A GTPase rhebl1; small GT 92.6 0.058 2E-06 50.5 3.0 25 176-200 24-48 (201)
464 2a5j_A RAS-related protein RAB 92.6 0.059 2E-06 49.9 3.1 23 177-199 22-44 (191)
465 3t5g_A GTP-binding protein RHE 92.6 0.06 2E-06 49.0 3.0 22 177-198 7-28 (181)
466 4dhe_A Probable GTP-binding pr 92.6 0.048 1.7E-06 51.6 2.4 25 176-200 29-53 (223)
467 3lxw_A GTPase IMAP family memb 92.5 0.059 2E-06 53.1 3.0 25 176-200 21-45 (247)
468 2bcg_Y Protein YP2, GTP-bindin 92.5 0.061 2.1E-06 50.3 3.0 23 177-199 9-31 (206)
469 3dzd_A Transcriptional regulat 92.5 0.2 6.7E-06 52.5 7.2 54 292-345 224-287 (368)
470 2atv_A RERG, RAS-like estrogen 92.5 0.064 2.2E-06 49.8 3.1 24 176-199 28-51 (196)
471 3cph_A RAS-related protein SEC 92.5 0.063 2.1E-06 50.2 3.1 24 176-199 20-43 (213)
472 1zj6_A ADP-ribosylation factor 92.5 0.062 2.1E-06 49.4 3.0 24 176-199 16-39 (187)
473 3reg_A RHO-like small GTPase; 92.5 0.064 2.2E-06 49.7 3.1 23 177-199 24-46 (194)
474 1x3s_A RAS-related protein RAB 92.5 0.065 2.2E-06 49.2 3.1 23 177-199 16-38 (195)
475 3cbq_A GTP-binding protein REM 92.4 0.043 1.5E-06 51.5 1.9 23 177-199 24-46 (195)
476 2p5s_A RAS and EF-hand domain 92.4 0.065 2.2E-06 50.0 3.1 26 175-200 27-52 (199)
477 2ew1_A RAS-related protein RAB 92.4 0.063 2.2E-06 50.8 3.0 23 177-199 27-49 (201)
478 3a1s_A Iron(II) transport prot 92.4 0.063 2.2E-06 53.4 3.1 23 177-199 6-28 (258)
479 2iwr_A Centaurin gamma 1; ANK 92.4 0.052 1.8E-06 49.3 2.3 23 177-199 8-30 (178)
480 2o52_A RAS-related protein RAB 92.4 0.061 2.1E-06 50.4 2.9 23 177-199 26-48 (200)
481 2xtp_A GTPase IMAP family memb 92.4 0.075 2.6E-06 52.1 3.6 26 175-200 21-46 (260)
482 3c5c_A RAS-like protein 12; GD 92.3 0.071 2.4E-06 49.4 3.1 23 177-199 22-44 (187)
483 2wsm_A Hydrogenase expression/ 92.3 0.08 2.7E-06 50.2 3.6 25 176-200 30-54 (221)
484 2e87_A Hypothetical protein PH 92.3 0.062 2.1E-06 55.9 3.0 26 175-200 166-191 (357)
485 3t34_A Dynamin-related protein 92.3 0.059 2E-06 56.0 2.8 22 178-199 36-57 (360)
486 1j8m_F SRP54, signal recogniti 92.3 0.046 1.6E-06 55.8 1.9 26 176-201 98-123 (297)
487 2ohf_A Protein OLA1, GTP-bindi 92.2 0.066 2.3E-06 57.0 3.2 25 175-199 21-45 (396)
488 2h57_A ADP-ribosylation factor 92.2 0.049 1.7E-06 50.3 1.9 25 176-200 21-45 (190)
489 2f7s_A C25KG, RAS-related prot 92.2 0.07 2.4E-06 50.4 3.0 23 177-199 26-48 (217)
490 1gwn_A RHO-related GTP-binding 92.2 0.071 2.4E-06 50.5 3.0 23 177-199 29-51 (205)
491 2fv8_A H6, RHO-related GTP-bin 92.2 0.073 2.5E-06 50.1 3.1 23 177-199 26-48 (207)
492 4ag6_A VIRB4 ATPase, type IV s 92.1 0.071 2.4E-06 55.9 3.3 27 175-201 34-60 (392)
493 3sr0_A Adenylate kinase; phosp 92.1 0.077 2.6E-06 51.2 3.2 24 178-201 2-25 (206)
494 3i8s_A Ferrous iron transport 92.1 0.071 2.4E-06 53.4 3.0 23 177-199 4-26 (274)
495 1p5z_B DCK, deoxycytidine kina 92.0 0.056 1.9E-06 53.4 2.2 27 175-201 23-49 (263)
496 3foz_A TRNA delta(2)-isopenten 92.0 0.098 3.3E-06 54.0 4.0 27 175-201 9-35 (316)
497 3a8t_A Adenylate isopentenyltr 92.0 0.099 3.4E-06 54.5 4.0 27 175-201 39-65 (339)
498 2fh5_B SR-beta, signal recogni 92.0 0.079 2.7E-06 49.9 3.1 24 176-199 7-30 (214)
499 2q3h_A RAS homolog gene family 91.9 0.087 3E-06 48.9 3.3 25 175-199 19-43 (201)
500 3t5d_A Septin-7; GTP-binding p 91.9 0.064 2.2E-06 53.5 2.5 22 178-199 10-31 (274)
No 1
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.85 E-value=1.6e-21 Score=199.47 Aligned_cols=146 Identities=16% Similarity=0.189 Sum_probs=110.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHH--H-HHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKI--N-EHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v--~-~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+||||||||||+++|+|+++| .+|.|.+++. ++ . ..... .++.+|++||++...++.
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p---~~G~I~~~G~--~i~~~~~~~~~-------~~~~ig~v~Q~~~~~~~~ 99 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLFQNFNGILKP---SSGRILFDNK--PIDYSRKGIMK-------LRESIGIVFQDPDNQLFS 99 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ECCCSHHHHHH-------HHHSEEEECSSGGGTCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCCCC---CCeEEEECCE--ECCcccccHHH-------HhCcEEEEEcCccccccc
Confidence 46899999999999999999999999986 3567777663 22 0 01111 124689999986556668
Q ss_pred CcHHHHHHHHHhhhh--HHH----Hhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHH
Q 007851 251 SKVMEWVAAEEKYKQ--EVQ----MKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAI 307 (587)
Q Consensus 251 ~tV~eni~~~~~~~~--~~~----~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a 307 (587)
+||.+|+.++....+ ..+ ... .+..++++.+.+||||| .+|+||+||||++ +|+..+
T Consensus 100 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~ 179 (275)
T 3gfo_A 100 ASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179 (275)
T ss_dssp SBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHH
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 999999998765322 111 111 22345677788999997 7999999999999 999999
Q ss_pred HHHHHHHHHHH-hCCcEEEEecCCC
Q 007851 308 VALSGIVSRLL-STGTVLVATSNRA 331 (587)
Q Consensus 308 ~~L~~Ll~~L~-~~G~vvV~TSn~~ 331 (587)
..+.++|..+. ++|.+||++||..
T Consensus 180 ~~i~~~l~~l~~~~g~tvi~vtHdl 204 (275)
T 3gfo_A 180 SEIMKLLVEMQKELGITIIIATHDI 204 (275)
T ss_dssp HHHHHHHHHHHHHHCCEEEEEESCC
T ss_pred HHHHHHHHHHHhhCCCEEEEEecCH
Confidence 99999999997 5688777777765
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.84 E-value=3.6e-21 Score=192.35 Aligned_cols=148 Identities=13% Similarity=0.126 Sum_probs=107.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHH-HH-HHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML-KI-NEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~-~v-~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|+||||||||||+++++|+++| .+|.|.+++.-. .. .......+ ++.+|++||++ .+++.+
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~~~~~~~~~~~~------~~~i~~v~Q~~-~l~~~~ 98 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLDKP---TEGEVYIDNIKTNDLDDDELTKIR------RDKIGFVFQQF-NLIPLL 98 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTEECTTCCHHHHHHHH------HHHEEEECTTC-CCCTTS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC---CceEEEECCEEcccCCHHHHHHHh------hccEEEEecCC-ccCCCC
Confidence 47899999999999999999999999986 356777765210 00 01111111 23589999984 567789
Q ss_pred cHHHHHHHHHhhh---h--HHH----HhccHH-----H-HHhHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 252 KVMEWVAAEEKYK---Q--EVQ----MKNILP-----A-VADKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 252 tV~eni~~~~~~~---~--~~~----~~~~L~-----~-la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
||.||+.++.... . ... ....+. . .+++.+.+||||| .+|+||+||||++ +|+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 9999999865322 1 111 111111 1 2356788999997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
..+..+.+++.++.++ |.+||++||..
T Consensus 179 ~~~~~i~~~l~~l~~~~g~tvi~vtHd~ 206 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDI 206 (235)
T ss_dssp HHHHHHHHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 9999999999999765 88877777763
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.83 E-value=4.1e-21 Score=204.48 Aligned_cols=144 Identities=17% Similarity=0.148 Sum_probs=112.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+++| ..|+|.+++. ++. . .....+.+|+|||++ .+++.+||
T Consensus 27 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~--~~~----~----~~~~~r~ig~VfQ~~-~l~p~ltV 92 (381)
T 3rlf_A 27 HEGEFVVFVGPSGCGKSTLLRMIAGLETI---TSGDLFIGEK--RMN----D----TPPAERGVGMVFQSY-ALYPHLSV 92 (381)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECT----T----CCGGGSCEEEECTTC-CCCTTSCH
T ss_pred CCCCEEEEEcCCCchHHHHHHHHHcCCCC---CCeEEEECCE--ECC----C----CCHHHCCEEEEecCC-cCCCCCCH
Confidence 47899999999999999999999999986 3567777662 221 0 112235799999984 67889999
Q ss_pred HHHHHHHHhhhh--HHH----Hhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EVQ----MKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~~----~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ ..+ ... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l 172 (381)
T 3rlf_A 93 AENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQM 172 (381)
T ss_dssp HHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH
Confidence 999999876432 111 111 12345677889999997 6999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |+++|++||..
T Consensus 173 ~~~l~~l~~~~g~tii~vTHd~ 194 (381)
T 3rlf_A 173 RIEISRLHKRLGRTMIYVTHDQ 194 (381)
T ss_dssp HHHHHHHHHHHCCEEEEECSCH
T ss_pred HHHHHHHHHhCCCEEEEEECCH
Confidence 9999999765 88887777764
No 4
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.83 E-value=4.8e-21 Score=202.86 Aligned_cols=145 Identities=14% Similarity=0.184 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
.+|+.++|+||||||||||+++|+|+++| .+|.|.+++. ++. ..+.. .++.+||+||++ .+++
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~~p---~~G~I~i~G~--~i~~~~~~~~~~-------~r~~Ig~v~Q~~-~l~~ 118 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLERP---TEGSVLVDGQ--ELTTLSESELTK-------ARRQIGMIFQHF-NLLS 118 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECSSCCHHHHHH-------HHTTEEEECSSC-CCCT
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCCCC---CceEEEECCE--ECCcCCHHHHHH-------HhCcEEEEeCCC-ccCC
Confidence 57899999999999999999999999986 3567777662 221 11111 125699999984 6788
Q ss_pred CCcHHHHHHHHHhhhh--HHH----Hhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 250 DSKVMEWVAAEEKYKQ--EVQ----MKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~--~~~----~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+||.+|+.++....+ ..+ .... +...+++++.+||||| .+|+||+|||||+ ||+..
T Consensus 119 ~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~ 198 (366)
T 3tui_C 119 SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198 (366)
T ss_dssp TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHH
T ss_pred CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 8999999999865432 111 1111 2345677788999997 7999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
+..+.++|+.+.++ |++||++||..
T Consensus 199 ~~~i~~lL~~l~~~~g~Tii~vTHdl 224 (366)
T 3tui_C 199 TRSILELLKDINRRLGLTILLITHEM 224 (366)
T ss_dssp HHHHHHHHHHHHHHSCCEEEEEESCH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 99999999999764 88887777764
No 5
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.83 E-value=2.5e-20 Score=189.18 Aligned_cols=144 Identities=18% Similarity=0.199 Sum_probs=108.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH--------------HHHHHHhhhhhhcccceee
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN--------------EHMHRLWKNQVAEKSLRSS 239 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~--------------~~l~~~~~~~~~~~~~ig~ 239 (587)
.+|+.++|+||||||||||+++|+|.++| ..|+|.+++. ++. ...... ++.+++
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~--~~~~~~~~~~~~~~~~~~~~~~~-------~~~i~~ 97 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEKP---SEGAIIVNGQ--NINLVRDKDGQLKVADKNQLRLL-------RTRLTM 97 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ECCEEECTTSSEEESCHHHHHHH-------HHHEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--EccccccccccccccChhhHHHH-------hcceEE
Confidence 47899999999999999999999999986 3567777652 111 000111 235899
Q ss_pred eeccCCCCCCCCcHHHHHHHHH-hhhh--H----HHHhc-----cHHHH-HhHhhhhhcccC-----------CCccEEE
Q 007851 240 ISGWITNLPFDSKVMEWVAAEE-KYKQ--E----VQMKN-----ILPAV-ADKFLVDQHADQ-----------RGASILC 295 (587)
Q Consensus 240 v~q~~~~~~~~~tV~eni~~~~-~~~~--~----~~~~~-----~L~~l-a~~l~~~LSgGq-----------~~p~LL~ 295 (587)
+||+ ..+++.+||.+|+.++. ...+ . ..... .+... +++.+.+||||| .+|+||+
T Consensus 98 v~Q~-~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 176 (262)
T 1b0u_A 98 VFQH-FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLL 176 (262)
T ss_dssp ECSS-CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EecC-cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9997 45677899999999853 2211 1 11111 22345 788889999997 8999999
Q ss_pred EeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 296 FDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 296 LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
||||++ +|+..+..+.++|..+.++|.+||++||.
T Consensus 177 LDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 177 FDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 999999 99999999999999998778877777775
No 6
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.83 E-value=1.4e-20 Score=186.61 Aligned_cols=145 Identities=13% Similarity=0.107 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH----HHHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN----EHMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~----~~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
.+|+.++|+||||||||||+++++|.++| .+|.|.+++. ++. ......+ .+.+++++|++ .+++
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~~~~~~~~~~~------~~~i~~v~q~~-~l~~ 95 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLLYILGLLDAP---TEGKVFLEGK--EVDYTNEKELSLLR------NRKLGFVFQFH-YLIP 95 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHHHHHTTSSCC---SEEEEEETTE--ECCSSCHHHHHHHH------HHHEEEECSSC-CCCT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--ECCCCCHHHHHHHH------hCcEEEEecCc-ccCC
Confidence 46899999999999999999999999985 3567777652 111 0000111 13589999974 5677
Q ss_pred CCcHHHHHHHHHhhhh--HH----HHhccH-----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 250 DSKVMEWVAAEEKYKQ--EV----QMKNIL-----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~--~~----~~~~~L-----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.+||.||+.++....+ .. .....+ ...+++.+.+||||| .+|+||+||||++ +|+..
T Consensus 96 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~ 175 (224)
T 2pcj_A 96 ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSAN 175 (224)
T ss_dssp TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHH
T ss_pred CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHH
Confidence 8999999988654321 01 111112 233566678999997 8999999999999 99999
Q ss_pred HHHHHHHHHHHHhCCcEEEEecCC
Q 007851 307 IVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+..+.++|.++.++|.+||++||.
T Consensus 176 ~~~~~~~l~~l~~~g~tvi~vtHd 199 (224)
T 2pcj_A 176 TKRVMDIFLKINEGGTSIVMVTHE 199 (224)
T ss_dssp HHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCC
Confidence 999999999998778888777776
No 7
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.83 E-value=3.1e-20 Score=187.99 Aligned_cols=145 Identities=13% Similarity=0.130 Sum_probs=108.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++...... .++.+++++|+. .+++.+||
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~--~~~~~~~~-------~~~~i~~v~q~~-~l~~~ltv 105 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLIKP---SSGIVTVFGK--NVVEEPHE-------VRKLISYLPEEA-GAYRNMQG 105 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ETTTCHHH-------HHTTEEEECTTC-CCCTTSBH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCCCC---CceEEEECCE--ECCccHHH-------HhhcEEEEcCCC-CCCCCCcH
Confidence 47899999999999999999999999985 3567777652 22110011 124689999974 46677899
Q ss_pred HHHHHHHHhhhh--HH----HHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.+.....+ .. ..... +...+++.+.+||||| .+|+||+||||++ +|+..+..+
T Consensus 106 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l 185 (256)
T 1vpl_A 106 IEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREV 185 (256)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHH
Confidence 999988653321 11 11111 2234566778999997 8999999999999 999999999
Q ss_pred HHHHHHHHhCCcEEEEecCCC
Q 007851 311 SGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++|..+.++|.+||++||..
T Consensus 186 ~~~l~~l~~~g~tiiivtHd~ 206 (256)
T 1vpl_A 186 RKILKQASQEGLTILVSSHNM 206 (256)
T ss_dssp HHHHHHHHHTTCEEEEEECCH
T ss_pred HHHHHHHHhCCCEEEEEcCCH
Confidence 999999987888887777763
No 8
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.82 E-value=2.3e-20 Score=189.80 Aligned_cols=144 Identities=19% Similarity=0.190 Sum_probs=109.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++... .. ++.+++++|++...++.+||
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p---~~G~I~~~g~--~~~~~--~~-------~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLIEP---TSGDVLYDGE--RKKGY--EI-------RRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ECCHH--HH-------GGGEEEECSSGGGGCCCSSH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCcEEEECCE--ECchH--Hh-------hhhEEEEeccchhhcCCCcH
Confidence 47899999999999999999999999985 3567777652 22111 11 24689999985445677999
Q ss_pred HHHHHHHHhhh-h----HHHHh-----ccHH--HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEEKYK-Q----EVQMK-----NILP--AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~~~~-~----~~~~~-----~~L~--~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.+|+.++.... . ..... ..+. ..+++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 99999864321 1 11111 1234 56677788999997 8999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|.++.++|.+||++||..
T Consensus 177 l~~~l~~l~~~g~tii~vtHd~ 198 (266)
T 2yz2_A 177 LLRIVEKWKTLGKTVILISHDI 198 (266)
T ss_dssp HHHHHHHHHHTTCEEEEECSCC
T ss_pred HHHHHHHHHHcCCEEEEEeCCH
Confidence 9999999987788777777764
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.82 E-value=1.2e-20 Score=199.54 Aligned_cols=144 Identities=18% Similarity=0.198 Sum_probs=110.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|+++| .+|+|.+++. ++.. ....++.+|++||++ .+++.+||
T Consensus 39 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~i~~--------~~~~~r~ig~v~Q~~-~l~~~ltv 104 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTILRLIAGLERP---TKGDVWIGGK--RVTD--------LPPQKRNVGLVFQNY-ALFQHMTV 104 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECTT--------CCGGGSSEEEECGGG-CCCTTSCH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC---CccEEEECCE--ECCc--------CChhhCcEEEEecCc-ccCCCCCH
Confidence 46899999999999999999999999986 3567777662 2210 111235799999984 57888999
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ .. .... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 105 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 184 (355)
T 1z47_A 105 YDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRREL 184 (355)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999999765432 11 1111 12345677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |.++|++||..
T Consensus 185 ~~~l~~l~~~~g~tvi~vTHd~ 206 (355)
T 1z47_A 185 RTFVRQVHDEMGVTSVFVTHDQ 206 (355)
T ss_dssp HHHHHHHHHHHTCEEEEECSCH
T ss_pred HHHHHHHHHhcCCEEEEECCCH
Confidence 9999999765 88777777763
No 10
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.82 E-value=1.3e-20 Score=199.39 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=109.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+++| .+|+|.+++. ++. . .....+.+||+||++ .+++.+||
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~i~----~----~~~~~r~ig~v~Q~~-~l~~~ltv 92 (359)
T 2yyz_A 27 KDGEFVALLGPSGCGKTTTLLMLAGIYKP---TSGEIYFDDV--LVN----D----IPPKYREVGMVFQNY-ALYPHMTV 92 (359)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECT----T----SCGGGTTEEEECSSC-CCCTTSCH
T ss_pred cCCCEEEEEcCCCchHHHHHHHHHCCCCC---CccEEEECCE--ECC----C----CChhhCcEEEEecCc-ccCCCCCH
Confidence 47899999999999999999999999985 3577877762 221 0 011235799999984 67788999
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ .. .... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (359)
T 2yyz_A 93 FENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIM 172 (359)
T ss_dssp HHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 999999764322 11 1111 22345677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |.++|++||..
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~ 194 (359)
T 2yyz_A 173 RAEIKHLQQELGITSVYVTHDQ 194 (359)
T ss_dssp HHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHHHHHhcCCEEEEEcCCH
Confidence 9999999764 88777777753
No 11
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.82 E-value=2.5e-20 Score=189.46 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=107.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|+++| .+|.|.+++. ++. ... ......++.+++++|+. .+++.+||
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~--~i~--~~~--~~~~~~~~~i~~v~Q~~-~l~~~~tv 117 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLEDF---DEGEIIIDGI--NLK--AKD--TNLNKVREEVGMVFQRF-NLFPHMTV 117 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ESS--STT--CCHHHHHHHEEEECSSC-CCCTTSCH
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCCCC---CCcEEEECCE--ECC--Ccc--ccHHHHhCcEEEEeCCC-cCCCCCCH
Confidence 47899999999999999999999999986 3567777662 210 000 00000123589999974 56778899
Q ss_pred HHHHHHHH-hhhh--H----HHHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 254 MEWVAAEE-KYKQ--E----VQMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 254 ~eni~~~~-~~~~--~----~~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.||+.++. ...+ . ...... +...+++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 118 ~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 197 (263)
T 2olj_A 118 LNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGE 197 (263)
T ss_dssp HHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHH
Confidence 99999854 2211 1 111111 2234566778999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+.++|.++.++|.+||++||.
T Consensus 198 ~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 198 VLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp HHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHhCCCEEEEEcCC
Confidence 999999998778888877776
No 12
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.82 E-value=2.7e-20 Score=196.87 Aligned_cols=148 Identities=15% Similarity=0.102 Sum_probs=109.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|+++| .+|+|.+++. ++.. ........++.+|+|||++ .+++.+||
T Consensus 28 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~p---~~G~I~i~G~--~i~~----~~~~~~~~~r~ig~vfQ~~-~l~p~ltV 97 (359)
T 3fvq_A 28 DPGEILFIIGASGCGKTTLLRCLAGFEQP---DSGEISLSGK--TIFS----KNTNLPVRERRLGYLVQEG-VLFPHLTV 97 (359)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTSSCC---SEEEEEETTE--EEES----SSCBCCGGGSCCEEECTTC-CCCTTSCH
T ss_pred cCCCEEEEECCCCchHHHHHHHHhcCCCC---CCcEEEECCE--ECcc----cccccchhhCCEEEEeCCC-cCCCCCCH
Confidence 47899999999999999999999999986 3567777652 1100 0001112345799999984 67889999
Q ss_pred HHHHHHHHhhhh--H----HHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--E----VQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~----~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ . ..... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 98 ~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l 177 (359)
T 3fvq_A 98 YRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQI 177 (359)
T ss_dssp HHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 999999764321 0 11111 22345778889999997 7999999999999 999999999
Q ss_pred HHHHHHHH-hCCcEEEEecCCC
Q 007851 311 SGIVSRLL-STGTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~-~~G~vvV~TSn~~ 331 (587)
..++.++. +.|+++|++||..
T Consensus 178 ~~~l~~~~~~~g~tvi~vTHd~ 199 (359)
T 3fvq_A 178 REDMIAALRANGKSAVFVSHDR 199 (359)
T ss_dssp HHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHHHHHHhCCCEEEEEeCCH
Confidence 98777765 4688887777764
No 13
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.82 E-value=1.6e-20 Score=199.04 Aligned_cols=144 Identities=16% Similarity=0.212 Sum_probs=109.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|+++| .+|+|.+++. ++.. .....+.+||+||++ .+++.+||
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~i~~--------~~~~~r~ig~v~Q~~-~l~~~ltv 92 (362)
T 2it1_A 27 KDGEFMALLGPSGSGKSTLLYTIAGIYKP---TSGKIYFDEK--DVTE--------LPPKDRNVGLVFQNW-ALYPHMTV 92 (362)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECTT--------SCGGGTTEEEECTTC-CCCTTSCH
T ss_pred CCCCEEEEECCCCchHHHHHHHHhcCCCC---CceEEEECCE--ECCc--------CCHhHCcEEEEecCc-ccCCCCCH
Confidence 46899999999999999999999999985 3577877662 2210 011235799999984 57788999
Q ss_pred HHHHHHHHhhhh--HH----HHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ .. ..... +..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (362)
T 2it1_A 93 YKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV 172 (362)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 999999865422 11 11111 2334677788999997 8999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |.++|++||..
T Consensus 173 ~~~l~~l~~~~g~tvi~vTHd~ 194 (362)
T 2it1_A 173 RAELKRLQKELGITTVYVTHDQ 194 (362)
T ss_dssp HHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHhCCCEEEEECCCH
Confidence 9999999764 88777777753
No 14
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.82 E-value=2.2e-20 Score=196.93 Aligned_cols=144 Identities=15% Similarity=0.169 Sum_probs=109.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|+.+| .+|+|.+++. ++.. . ...++.+||+||++ .+++.+||
T Consensus 24 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~~~g~--~i~~----~----~~~~r~ig~v~Q~~-~l~~~ltv 89 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFLELIAGFHVP---DSGRILLDGK--DVTD----L----SPEKHDIAFVYQNY-SLFPHMNV 89 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHHHHHHTSSCC---SEEEEEETTE--ECTT----S----CHHHHTCEEECTTC-CCCTTSCH
T ss_pred cCCCEEEEECCCCccHHHHHHHHHcCCCC---CCcEEEECCE--ECCC----C----chhhCcEEEEecCc-ccCCCCCH
Confidence 47899999999999999999999999986 3577877762 2211 0 01124689999984 67788999
Q ss_pred HHHHHHHHhhhh---HHHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ---EVQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 254 ~eni~~~~~~~~---~~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
.||+.++....+ ...... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+.++
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 999999765321 111111 22345677888999997 7999999999999 999999999999
Q ss_pred HHHHHh-CCcEEEEecCCC
Q 007851 314 VSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~-~G~vvV~TSn~~ 331 (587)
|+++.+ .|+++|++||..
T Consensus 170 l~~l~~~~g~tii~vTHd~ 188 (348)
T 3d31_A 170 LSVLHKKNKLTVLHITHDQ 188 (348)
T ss_dssp HHHHHHHTTCEEEEEESCH
T ss_pred HHHHHHhcCCEEEEEeCCH
Confidence 999976 488777777753
No 15
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.82 E-value=2.3e-20 Score=188.84 Aligned_cols=146 Identities=17% Similarity=0.128 Sum_probs=107.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++++|.++| .+|.|.+++. ++... ... ..++.+++++|+. .+++.+|
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p---~~G~i~~~g~--~~~~~~~~~------~~~~~i~~v~q~~-~l~~~~t 98 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLKA---DEGRVYFENK--DITNKEPAE------LYHYGIVRTFQTP-QPLKEMT 98 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ECTTCCHHH------HHHHTEEECCCCC-GGGGGSB
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEECCE--ECCCCCHHH------HHhCCEEEEccCC-ccCCCCc
Confidence 47899999999999999999999999985 3567777652 21100 000 0124589999974 5566799
Q ss_pred HHHHHHHHHhh--hh--------------H---HHHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEe
Q 007851 253 VMEWVAAEEKY--KQ--------------E---VQMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFD 297 (587)
Q Consensus 253 V~eni~~~~~~--~~--------------~---~~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LD 297 (587)
|.||+.++... .+ . ...... +...+++.+.+||||| .+|+||+||
T Consensus 99 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLD 178 (257)
T 1g6h_A 99 VLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMD 178 (257)
T ss_dssp HHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred HHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999886422 01 0 011111 2234566778999997 899999999
Q ss_pred CCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 298 EIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 298 EPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
||++ +|+..+..+.++|.++.++|.+||++||..
T Consensus 179 EPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 213 (257)
T 1g6h_A 179 EPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRL 213 (257)
T ss_dssp STTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred CCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCH
Confidence 9999 999999999999999988788777777764
No 16
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.81 E-value=1.9e-20 Score=199.21 Aligned_cols=150 Identities=15% Similarity=0.162 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+++| .+|+|.+++. ++... ..........+.+|||||++ .+++.+||
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~~~~~--~~~~~~~~~~r~ig~v~Q~~-~l~~~ltv 98 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEP---SRGQIYIGDK--LVADP--EKGIFVPPKDRDIAMVFQSY-ALYPHMTV 98 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSCC---SEEEEEETTE--EEEEG--GGTEECCGGGSSEEEECSCC-CCCTTSCH
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCCC---CccEEEECCE--ECccc--cccccCCHhHCCEEEEeCCC-ccCCCCCH
Confidence 46899999999999999999999999986 3567777652 11100 00000111235799999984 57788999
Q ss_pred HHHHHHHHhhhh--HH----HHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.+|+.++....+ .. ..... +..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 99 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 178 (372)
T 1g29_1 99 YDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRM 178 (372)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHH
Confidence 999999865432 11 11111 2344677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |.++|++||..
T Consensus 179 ~~~l~~l~~~~g~tvi~vTHd~ 200 (372)
T 1g29_1 179 RAELKKLQRQLGVTTIYVTHDQ 200 (372)
T ss_dssp HHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHhcCCEEEEECCCH
Confidence 9999999764 88777777753
No 17
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.81 E-value=1.6e-20 Score=199.57 Aligned_cols=144 Identities=18% Similarity=0.179 Sum_probs=105.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+++| .+|+|.+++. ++. . .....+.+|||||++ .+++.+||
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~i~----~----~~~~~r~ig~v~Q~~-~l~~~ltv 100 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLEEP---TEGRIYFGDR--DVT----Y----LPPKDRNISMVFQSY-AVWPHMTV 100 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECT----T----SCGGGGTEEEEEC-------CCCH
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCC---CceEEEECCE--ECC----C----CChhhCcEEEEecCc-ccCCCCCH
Confidence 47899999999999999999999999985 3577877662 221 0 011235799999984 57788999
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ .. .... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 101 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 180 (372)
T 1v43_A 101 YENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAM 180 (372)
T ss_dssp HHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHH
Confidence 999998754321 11 1111 22345677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |.++|++||..
T Consensus 181 ~~~l~~l~~~~g~tvi~vTHd~ 202 (372)
T 1v43_A 181 RAEIKKLQQKLKVTTIYVTHDQ 202 (372)
T ss_dssp HHHHHHHHHHHTCEEEEEESCH
T ss_pred HHHHHHHHHhCCCEEEEEeCCH
Confidence 9999999765 88777777753
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=2.8e-20 Score=186.30 Aligned_cols=145 Identities=13% Similarity=0.179 Sum_probs=105.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++... .... .++.++|++|+. .+++.+|
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~l~~~lt 97 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTLSAIAGLVRA---QKGKIIFNGQ--DITNKPAHVI------NRMGIALVPEGR-RIFPELT 97 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ECTTCCHHHH------HHTTEEEECSSC-CCCTTSB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCceEEECCE--ECCCCCHHHH------HhCCEEEEecCC-ccCCCCc
Confidence 46899999999999999999999999985 3567777652 21100 0000 123589999974 5677789
Q ss_pred HHHHHHHHHhhh---hH--HHHhc------cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 253 VMEWVAAEEKYK---QE--VQMKN------ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 253 V~eni~~~~~~~---~~--~~~~~------~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|.||+.++.... .. ..... .+...+++.+.+||||| .+|+||+||||++ +|+..+..
T Consensus 98 v~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~ 177 (240)
T 1ji0_A 98 VYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177 (240)
T ss_dssp HHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 999999864111 01 11111 13334556677999997 8999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+.++|.++.+.|.+||++||.
T Consensus 178 l~~~l~~~~~~g~tvi~vtHd 198 (240)
T 1ji0_A 178 VFEVIQKINQEGTTILLVEQN 198 (240)
T ss_dssp HHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHHHHCCCEEEEEecC
Confidence 999999998778777666775
No 19
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.81 E-value=1.5e-20 Score=198.66 Aligned_cols=149 Identities=17% Similarity=0.164 Sum_probs=110.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+|||||||||||++|+|+++| .+|+|.+++. ++... . .......++.+||+||++ .+++.+||
T Consensus 29 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~p---~~G~I~i~g~--~i~~~--~-~~~~~~~~r~ig~v~Q~~-~l~~~ltv 99 (353)
T 1oxx_K 29 ENGERFGILGPSGAGKTTFMRIIAGLDVP---STGELYFDDR--LVASN--G-KLIVPPEDRKIGMVFQTW-ALYPNLTA 99 (353)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHTSSCC---SEEEEEETTE--EEEET--T-EESSCGGGSCEEEEETTS-CCCTTSCH
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCCCCC---CceEEEECCE--ECccc--c-cccCChhhCCEEEEeCCC-ccCCCCCH
Confidence 46899999999999999999999999986 3567777652 11100 0 000112245799999984 67788999
Q ss_pred HHHHHHHHhhhh--HH----HHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHH
Q 007851 254 MEWVAAEEKYKQ--EV----QMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVAL 310 (587)
Q Consensus 254 ~eni~~~~~~~~--~~----~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L 310 (587)
.||+.++....+ .. .... .+..++++.+.+||||| .+|+||+||||++ ||+..+..+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l 179 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHH
Confidence 999999764321 11 1111 12345677788999997 7999999999999 999999999
Q ss_pred HHHHHHHHhC-CcEEEEecCCC
Q 007851 311 SGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 311 ~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.++|+++.++ |+++|++||..
T Consensus 180 ~~~l~~l~~~~g~tvi~vTHd~ 201 (353)
T 1oxx_K 180 RALVKEVQSRLGVTLLVVSHDP 201 (353)
T ss_dssp HHHHHHHHHHHCCEEEEEESCH
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999764 88777777753
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.81 E-value=3.9e-20 Score=185.58 Aligned_cols=142 Identities=15% Similarity=0.152 Sum_probs=105.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+ +.++|+||||||||||+++++|.++| .+|.|.+++. ++.. . ...++.+++++|+. .+++.+||
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~--~~~~----~----~~~~~~i~~v~q~~-~l~~~ltv 87 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVKP---DRGEVRLNGA--DITP----L----PPERRGIGFVPQDY-ALFPHLSV 87 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSCC---SEEEEEETTE--ECTT----S----CTTTSCCBCCCSSC-CCCTTSCH
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCCC---CceEEEECCE--ECCc----C----chhhCcEEEEcCCC-ccCCCCcH
Confidence 46 89999999999999999999999985 3567777662 2210 0 11235689999974 56777899
Q ss_pred HHHHHHHHhhhh----HHHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----EVQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 254 ~eni~~~~~~~~----~~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
.||+.++....+ ...... .+...+++.+.+||||| .+|++|+||||++ +|+..+..+.+
T Consensus 88 ~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~ 167 (240)
T 2onk_A 88 YRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167 (240)
T ss_dssp HHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 999988643211 111111 12334567788999997 8999999999999 99999999999
Q ss_pred HHHHHHhC-CcEEEEecCC
Q 007851 313 IVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 313 Ll~~L~~~-G~vvV~TSn~ 330 (587)
++..+.++ |.+||++||.
T Consensus 168 ~l~~l~~~~g~tvi~vtHd 186 (240)
T 2onk_A 168 ELRFVQREFDVPILHVTHD 186 (240)
T ss_dssp HHHHHHHHHTCCEEEEESC
T ss_pred HHHHHHHhcCCEEEEEeCC
Confidence 99999764 7777666775
No 21
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.80 E-value=9.1e-20 Score=179.90 Aligned_cols=140 Identities=15% Similarity=0.140 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++. ..++.++|++|++ .+++.+||
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~--~~~-----------~~~~~i~~v~q~~-~~~~~~tv 95 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLLKTISTYLKP---LKGEIIYNGV--PIT-----------KVKGKIFFLPEEI-IVPRKISV 95 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTE--EGG-----------GGGGGEEEECSSC-CCCTTSBH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCeEEEECCE--Ehh-----------hhcCcEEEEeCCC-cCCCCCCH
Confidence 46899999999999999999999999985 3567777662 221 0135689999974 45677899
Q ss_pred HHHHHHHHhhhh----HHHHhccH-----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----EVQMKNIL-----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 254 ~eni~~~~~~~~----~~~~~~~L-----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
.||+.++....+ .......+ ... ++.+.+||||| .+|+||+||||++ +|+..+..+.+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~ 174 (214)
T 1sgw_A 96 EDYLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLK 174 (214)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHH
Confidence 999988653221 11111111 223 56678999997 7999999999999 99999999999
Q ss_pred HHHHHHhCCcEEEEecCCC
Q 007851 313 IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 313 Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|.++.++|.+||++||..
T Consensus 175 ~l~~~~~~g~tiiivtHd~ 193 (214)
T 1sgw_A 175 SILEILKEKGIVIISSREE 193 (214)
T ss_dssp HHHHHHHHHSEEEEEESSC
T ss_pred HHHHHHhCCCEEEEEeCCH
Confidence 9999986677777667754
No 22
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.79 E-value=2.3e-19 Score=181.20 Aligned_cols=132 Identities=16% Similarity=0.243 Sum_probs=102.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++++|.++| .+|.|.. .+.+++++|++ .+++.+||
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~---------------------~~~i~~v~q~~-~~~~~~tv 83 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHRP---IQGKIEV---------------------YQSIGFVPQFF-SSPFAYSV 83 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSCC---SEEEEEE---------------------CSCEEEECSCC-CCSSCCBH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCcEEEE---------------------eccEEEEcCCC-ccCCCCCH
Confidence 46899999999999999999999999986 2456640 13589999974 45567899
Q ss_pred HHHHHHHHhhh-------hH---HHHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYK-------QE---VQMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~-------~~---~~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.||+.++.... .. ...... +...+++.+.+||||| .+|+||+||||++ +|+..
T Consensus 84 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~ 163 (253)
T 2nq2_C 84 LDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLAN 163 (253)
T ss_dssp HHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHH
T ss_pred HHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 99999864211 11 111111 2334566778999997 8999999999999 99999
Q ss_pred HHHHHHHHHHHHhC-CcEEEEecCC
Q 007851 307 IVALSGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
+..+.++|..+.++ |.+||++||.
T Consensus 164 ~~~l~~~l~~l~~~~g~tvi~vtHd 188 (253)
T 2nq2_C 164 QDIVLSLLIDLAQSQNMTVVFTTHQ 188 (253)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEESC
T ss_pred HHHHHHHHHHHHHhcCCEEEEEecC
Confidence 99999999999876 8877777775
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.79 E-value=5.9e-20 Score=186.91 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=105.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++++|+++| .+|.|.+++. ++... ... ..+.+++++|+. .+++.+|
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g~--~~~~~~~~~-------~~~~i~~v~q~~-~~~~~~t 101 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLLRLLTGYLSP---SHGECHLLGQ--NLNSWQPKA-------LARTRAVMRQYS-ELAFPFS 101 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHHHHHTSSSCC---SSCEEEETTE--ETTTSCHHH-------HHHHEEEECSCC-CCCSCCB
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECCE--ECCcCCHHH-------HhheEEEEecCC-ccCCCCC
Confidence 47899999999999999999999999986 2456777653 22110 001 123579999974 4567799
Q ss_pred HHHHHHHHHhhhh----HHHHhc-----cHHHHHhHhhhhhcccC-----------C------CccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQ----EVQMKN-----ILPAVADKFLVDQHADQ-----------R------GASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~----~~~~~~-----~L~~la~~l~~~LSgGq-----------~------~p~LL~LDEPt~-lD~~ 305 (587)
|.||+.++..... ...... .+..++++.+.+||||| . +|+||+||||++ +|+.
T Consensus 102 v~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~ 181 (266)
T 4g1u_C 102 VSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLY 181 (266)
T ss_dssp HHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHH
T ss_pred HHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHH
Confidence 9999998754221 111111 12234567778999997 6 999999999999 9999
Q ss_pred HHHHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+..+.++|.++.++ |.+||++||..
T Consensus 182 ~~~~i~~~l~~l~~~~~~tvi~vtHdl 208 (266)
T 4g1u_C 182 HQQHTLRLLRQLTRQEPLAVCCVLHDL 208 (266)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECSCH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEEEcCH
Confidence 999999999999876 56777777753
No 24
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.79 E-value=1.9e-19 Score=181.15 Aligned_cols=143 Identities=11% Similarity=0.105 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++.. .... .++.+++++|++. + +..|
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~i~g~--~~~~~~~~~-------~~~~i~~v~Q~~~-l-~~~t 98 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFYIP---ENGQVLIDGH--DLALADPNW-------LRRQVGVVLQDNV-L-LNRS 98 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTE--ETTTSCHHH-------HHHHEEEECSSCC-C-TTSB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCcEEEECCE--EhhhCCHHH-------HHhcEEEEeCCCc-c-cccc
Confidence 47899999999999999999999999986 3567777652 2210 0011 1235899999743 3 3579
Q ss_pred HHHHHHHHHhhhhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|.||+.++.......... ..+..+++++ +.+||||| .+|+||+||||++ +|+
T Consensus 99 v~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~ 178 (247)
T 2ff7_A 99 IIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDY 178 (247)
T ss_dssp HHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 999998753211111111 1223344443 36899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..+..+.++|..+. +|.+||++||..
T Consensus 179 ~~~~~i~~~l~~~~-~g~tviivtH~~ 204 (247)
T 2ff7_A 179 ESEHVIMRNMHKIC-KGRTVIIIAHRL 204 (247)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEECSSG
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEeCCH
Confidence 99999999999994 588777777764
No 25
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.78 E-value=1.4e-19 Score=182.51 Aligned_cols=143 Identities=22% Similarity=0.285 Sum_probs=105.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++++|.++| . |.|.+++. ++.. .... .++.++|++|+. .+++.+|
T Consensus 24 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~--~~~~~~~~~-------~~~~i~~v~q~~-~~~~~~t 89 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQ--PLEAWSATK-------LALHRAYLSQQQ-TPPFATP 89 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTE--EGGGSCHHH-------HHHHEEEECSCC-CCCTTCB
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCE--ECCcCCHHH-------HhceEEEECCCC-ccCCCCc
Confidence 46899999999999999999999999985 3 67777652 2110 0001 123589999974 4567789
Q ss_pred HHHHHHHHHhhh-hHHHHhc-----cHHHHHhHhhhhhcccC-----------CCcc-------EEEEeCCCC-CCHHHH
Q 007851 253 VMEWVAAEEKYK-QEVQMKN-----ILPAVADKFLVDQHADQ-----------RGAS-------ILCFDEIQT-VDVFAI 307 (587)
Q Consensus 253 V~eni~~~~~~~-~~~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~-------LL~LDEPt~-lD~~~a 307 (587)
|.||+.++.... ....... .+...+++.+.+||||| .+|+ ||+||||++ +|+..+
T Consensus 90 v~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~ 169 (249)
T 2qi9_C 90 VWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQ 169 (249)
T ss_dssp HHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHH
T ss_pred HHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHH
Confidence 999998753111 1111111 22344566778999997 6888 999999999 999999
Q ss_pred HHHHHHHHHHHhCCcEEEEecCC
Q 007851 308 VALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 308 ~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
..+.++|..+.++|.+||++||.
T Consensus 170 ~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 170 SALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHHhCCCEEEEEeCC
Confidence 99999999998778888777886
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.78 E-value=4.7e-19 Score=180.68 Aligned_cols=143 Identities=12% Similarity=0.067 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+||||||||||+++|+|+++| .+|.|.+++. ++... ... .++.++|++|++ . ++..|
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p---~~G~I~~~g~--~i~~~~~~~-------~~~~i~~v~Q~~-~-l~~~t 108 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGE--PLVQYDHHY-------LHTQVAAVGQEP-L-LFGRS 108 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC---SEEEEEETTE--EGGGBCHHH-------HHHHEEEECSSC-C-CCSSB
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCCEEEECCE--EcccCCHHH-------HhccEEEEecCC-c-ccccc
Confidence 57899999999999999999999999985 3567777652 22110 001 124589999974 3 34469
Q ss_pred HHHHHHHHHhhhhH-H---H--HhccHHH-----------HHhHhhhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 253 VMEWVAAEEKYKQE-V---Q--MKNILPA-----------VADKFLVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 253 V~eni~~~~~~~~~-~---~--~~~~L~~-----------la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|.||+.++...... . . ....+.. .+++.+.+||||| .+|+||+||||++ +|
T Consensus 109 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD 188 (271)
T 2ixe_A 109 FRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188 (271)
T ss_dssp HHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCC
T ss_pred HHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 99999885321110 0 0 0011111 1345567999997 8999999999999 99
Q ss_pred HHHHHHHHHHHHHHHh-CCcEEEEecCC
Q 007851 304 VFAIVALSGIVSRLLS-TGTVLVATSNR 330 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~-~G~vvV~TSn~ 330 (587)
+..+..+.++|..+.+ .|.+||++||.
T Consensus 189 ~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 189 AGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 9999999999999865 47877777775
No 27
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.78 E-value=3e-19 Score=185.27 Aligned_cols=142 Identities=11% Similarity=0.183 Sum_probs=101.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++|+|+++| ..|.|.+++. ++.. .... .++.+++|+|++ .++..|
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p---~~G~I~i~G~--~i~~~~~~~-------~r~~i~~v~Q~~--~lf~~T 143 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDI---SSGCIRIDGQ--DISQVTQAS-------LRSHIGVVPQDT--VLFNDT 143 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCC---SEEEEEETTE--ETTSBCHHH-------HHHTEEEECSSC--CCCSEE
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCC---CCcEEEECCE--EcccCCHHH-------HhcceEEEecCC--ccCccc
Confidence 57899999999999999999999999986 3567777663 2211 0011 134689999974 455789
Q ss_pred HHHHHHHHHhhhhHHHHh-----ccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMK-----NILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~-----~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|+|||.++.......... ..+....+.++ .+||||| .+|+||+|||||+ +|+
T Consensus 144 v~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~ 223 (306)
T 3nh6_A 144 IADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDT 223 (306)
T ss_dssp HHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCH
T ss_pred HHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCH
Confidence 999999875332211111 11222333332 4799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.....+.++|..+.+ |.++|+++|+
T Consensus 224 ~~~~~i~~~l~~l~~-~~Tvi~itH~ 248 (306)
T 3nh6_A 224 SNERAIQASLAKVCA-NRTTIVVAHR 248 (306)
T ss_dssp HHHHHHHHHHHHHHT-TSEEEEECCS
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEEcC
Confidence 999999999999865 4566566665
No 28
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.77 E-value=2e-19 Score=184.20 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=103.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCC-CCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLP-FDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~-~~~t 252 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++. ++... ... ....++.+++++|+....+ ..+|
T Consensus 45 ~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g~--~~~~~--~~~--~~~~~~~i~~v~Q~~~~~~~~~lt 115 (279)
T 2ihy_A 45 AKGDKWILYGLNGAGKTTLLNILNAYEPA---TSGTVNLFGK--MPGKV--GYS--AETVRQHIGFVSHSLLEKFQEGER 115 (279)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEETTB--CCC-----CC--HHHHHTTEEEECHHHHTTSCTTSB
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC---CCeEEEECCE--Ecccc--cCC--HHHHcCcEEEEEcCcccccCCCCC
Confidence 47899999999999999999999999986 3567777652 11100 000 0011246899999753322 3579
Q ss_pred HHHHHHHHHhh----h---hH---HHHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKY----K---QE---VQMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~----~---~~---~~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|.||+.++... . .. ...... +...+++.+.+||||| .+|+||+||||++ +|+.
T Consensus 116 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~ 195 (279)
T 2ihy_A 116 VIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFI 195 (279)
T ss_dssp HHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHH
T ss_pred HHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHH
Confidence 99999875211 0 01 011111 2234566778999997 8999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEE--EEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVL--VATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vv--V~TSn~~ 331 (587)
.+..+.++|.++.++|.+| |++||..
T Consensus 196 ~~~~l~~~l~~l~~~g~tv~~iivtHd~ 223 (279)
T 2ihy_A 196 ARESLLSILDSLSDSYPTLAMIYVTHFI 223 (279)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCG
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEecCH
Confidence 9999999999997767655 6666653
No 29
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.77 E-value=4.2e-19 Score=178.81 Aligned_cols=146 Identities=12% Similarity=0.096 Sum_probs=99.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhc--cCCcccceEEEEEehhHHHHHHH-HHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGA--TEGIVKHRQRFHFHEAMLKINEH-MHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~--l~~~~~~k~rvhf~~fm~~v~~~-l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+||||||||||+++|+|. ++| .+|.|.+++. ++... .... .+..+++++|++ .+++.
T Consensus 27 ~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~--~~~~~~~~~~------~~~~i~~v~q~~-~~~~~ 94 (250)
T 2d2e_A 27 PKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGE--NILELSPDER------ARKGLFLAFQYP-VEVPG 94 (250)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTE--ECTTSCHHHH------HHTTBCCCCCCC-C-CCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCE--ECCCCCHHHH------HhCcEEEeccCC-ccccC
Confidence 46899999999999999999999998 543 3567777652 21100 0000 113478899974 45677
Q ss_pred CcHHHHHHHHHhh-hh----H----HHHhcc-----H-HHHHhHhhhh-hcccC-----------CCccEEEEeCCCC-C
Q 007851 251 SKVMEWVAAEEKY-KQ----E----VQMKNI-----L-PAVADKFLVD-QHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 251 ~tV~eni~~~~~~-~~----~----~~~~~~-----L-~~la~~l~~~-LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
+||.+|+.++... .+ . ...... + ..++++.+.+ ||||| .+|+||+||||++ +
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~L 174 (250)
T 2d2e_A 95 VTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGL 174 (250)
T ss_dssp CBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTT
T ss_pred CCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCC
Confidence 9999999875421 11 0 111111 2 1334556677 99997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|+..+..+.++|..+.++|.+||++||..
T Consensus 175 D~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 203 (250)
T 2d2e_A 175 DIDALKVVARGVNAMRGPNFGALVITHYQ 203 (250)
T ss_dssp CHHHHHHHHHHHHHHCSTTCEEEEECSSS
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999999999976788777777764
No 30
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.76 E-value=1e-18 Score=177.17 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=99.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+++ .|.|.+++. ++.. .. ....++.+++++|++ .++..||
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~--~i~~----~~--~~~~~~~i~~v~Q~~--~l~~~tv 109 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGK--NVNK----YN--RNSIRSIIGIVPQDT--ILFNETI 109 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTE--EGGG----BC--HHHHHTTEEEECSSC--CCCSEEH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCE--Ehhh----cC--HHHHhccEEEEcCCC--cccccCH
Confidence 47899999999999999999999999862 367777652 2210 00 001124689999974 2345799
Q ss_pred HHHHHHHHhhhhHHHHhc-----cHHHHHh-----------HhhhhhcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 254 MEWVAAEEKYKQEVQMKN-----ILPAVAD-----------KFLVDQHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~-----~L~~la~-----------~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
.+|+.++........... .+....+ +.+.+||||| .+|+||+||||++ +|+.
T Consensus 110 ~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~ 189 (260)
T 2ghi_A 110 KYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSK 189 (260)
T ss_dssp HHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHH
T ss_pred HHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 999987532111111111 1122221 2346899997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+.++|..+.+ |.+||++||..
T Consensus 190 ~~~~i~~~l~~l~~-~~tviivtH~~ 214 (260)
T 2ghi_A 190 TEYLFQKAVEDLRK-NRTLIIIAHRL 214 (260)
T ss_dssp HHHHHHHHHHHHTT-TSEEEEECSSG
T ss_pred HHHHHHHHHHHhcC-CCEEEEEcCCH
Confidence 99999999999854 77777777763
No 31
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.74 E-value=5.5e-19 Score=177.20 Aligned_cols=143 Identities=14% Similarity=0.142 Sum_probs=99.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| . +|.|.+++. ++. ... ....++.+++++|++ . ++..||
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p-~--~G~i~~~g~--~~~----~~~--~~~~~~~i~~v~q~~-~-l~~~tv 92 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQP-T--AGEITIDGQ--PID----NIS--LENWRSQIGFVSQDS-A-IMAGTI 92 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSCC-S--BSCEEETTE--EST----TTS--CSCCTTTCCEECCSS-C-CCCEEH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CcEEEECCE--Ehh----hCC--HHHHHhhEEEEcCCC-c-cccccH
Confidence 47899999999999999999999999986 2 355666552 211 000 011235689999974 3 344699
Q ss_pred HHHHHHHHh-hhhHHHHhccH-----HHHHh-----------HhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEEK-YKQEVQMKNIL-----PAVAD-----------KFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~~-~~~~~~~~~~L-----~~la~-----------~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
.||+.++.. ..........+ ..+++ +.+.+||||| .+|+||+||||++ +|+
T Consensus 93 ~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~ 172 (243)
T 1mv5_A 93 RENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDS 172 (243)
T ss_dssp HHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCS
T ss_pred HHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 999987521 11111111111 11122 2245899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
..+..+.++|..+. +|.+||++||.
T Consensus 173 ~~~~~i~~~l~~~~-~~~tvi~vtH~ 197 (243)
T 1mv5_A 173 ESESMVQKALDSLM-KGRTTLVIAHR 197 (243)
T ss_dssp SSCCHHHHHHHHHH-TTSEEEEECCS
T ss_pred HHHHHHHHHHHHhc-CCCEEEEEeCC
Confidence 99999999999987 68877777775
No 32
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.74 E-value=5.2e-18 Score=168.71 Aligned_cols=130 Identities=18% Similarity=0.206 Sum_probs=93.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++ .++|++|++ .+ +..||
T Consensus 32 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g---------------------~i~~v~q~~-~~-~~~tv 85 (229)
T 2pze_A 32 ERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------------------RISFCSQFS-WI-MPGTI 85 (229)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC---SEEEEEECS---------------------CEEEECSSC-CC-CSBCH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC---CccEEEECC---------------------EEEEEecCC-cc-cCCCH
Confidence 47899999999999999999999999986 356776654 368999974 33 34699
Q ss_pred HHHHHHHHhhhhH--HH--HhccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQ--MKNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~--~~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.||+.++...... .. ....+....+.+ +.+||||| .+|+||+||||++ +|+..
T Consensus 86 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~ 165 (229)
T 2pze_A 86 KENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 165 (229)
T ss_dssp HHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHH
T ss_pred HHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHH
Confidence 9999875321110 00 011122222222 36899997 7999999999999 99999
Q ss_pred HHHHHHH-HHHHHhCCcEEEEecCC
Q 007851 307 IVALSGI-VSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~L-l~~L~~~G~vvV~TSn~ 330 (587)
+..+.++ +..+. .|.+||++||.
T Consensus 166 ~~~i~~~l~~~~~-~~~tvi~vtH~ 189 (229)
T 2pze_A 166 EKEIFESCVCKLM-ANKTRILVTSK 189 (229)
T ss_dssp HHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred HHHHHHHHHHHhh-CCCEEEEEcCC
Confidence 9999886 45553 47777777775
No 33
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.74 E-value=3.3e-18 Score=171.04 Aligned_cols=131 Identities=15% Similarity=0.145 Sum_probs=96.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++ .+++++|++ .++.+||
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p---~~G~I~~~g---------------------~i~~v~Q~~--~~~~~tv 82 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEMDK---VEGHVAIKG---------------------SVAYVPQQA--WIQNDSL 82 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCSEE---EEEEEEECS---------------------CEEEECSSC--CCCSEEH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC---CCceEEECC---------------------EEEEEcCCC--cCCCcCH
Confidence 47899999999999999999999999975 356776654 269999974 3568899
Q ss_pred HHHHHHHHhhhhH--HH---HhccHHHH----------HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQ---MKNILPAV----------ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~---~~~~L~~l----------a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.||+.++...... .. .......+ +++.+.+||||| .+|+||+||||++ +|+..
T Consensus 83 ~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~ 162 (237)
T 2cbz_A 83 RENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162 (237)
T ss_dssp HHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHH
T ss_pred HHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHH
Confidence 9999875421110 00 11111111 134457899997 7999999999999 99999
Q ss_pred HHHHHHHHH---HHHhCCcEEEEecCCC
Q 007851 307 IVALSGIVS---RLLSTGTVLVATSNRA 331 (587)
Q Consensus 307 a~~L~~Ll~---~L~~~G~vvV~TSn~~ 331 (587)
+..+.+++. .+ .+|.+||++||..
T Consensus 163 ~~~i~~~l~~~~~~-~~~~tviivtH~~ 189 (237)
T 2cbz_A 163 GKHIFENVIGPKGM-LKNKTRILVTHSM 189 (237)
T ss_dssp HHHHHHHTTSTTST-TTTSEEEEECSCS
T ss_pred HHHHHHHHHHHHhh-cCCCEEEEEecCh
Confidence 999998884 34 3577777777764
No 34
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.73 E-value=3e-18 Score=174.35 Aligned_cols=149 Identities=10% Similarity=0.034 Sum_probs=102.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|+... ....|.|.+++. ++...-...+ .+..+++++|++ .+++.+||
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~--~i~~~~~~~~-----~~~~i~~v~Q~~-~l~~~~tv 114 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGK--DLLALSPEDR-----AGEGIFMAFQYP-VEIPGVSN 114 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTE--EGGGSCHHHH-----HHHTEEEECSSC-CCCTTCBH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCE--ECCcCCHHHH-----hhCCEEEEccCc-cccccccH
Confidence 47899999999999999999999998521 013567877662 2210000000 013479999974 56678999
Q ss_pred HHHHHHHHh-h---hh-----HH----HHhccHH------HHHhHhhh-hhcccC-----------CCccEEEEeCCCC-
Q 007851 254 MEWVAAEEK-Y---KQ-----EV----QMKNILP------AVADKFLV-DQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 254 ~eni~~~~~-~---~~-----~~----~~~~~L~------~la~~l~~-~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
.+|+.+... . .+ .. .....+. .++++.+. +||||| .+|+||+||||++
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~ 194 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSG 194 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTT
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCC
Confidence 999976431 1 00 11 1111111 23344555 599997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+..+..+.++|..+.++|.+||++||..
T Consensus 195 LD~~~~~~l~~~l~~l~~~g~tviivtHd~ 224 (267)
T 2zu0_C 195 LDIDALKVVADGVNSLRDGKRSFIIVTHYQ 224 (267)
T ss_dssp CCHHHHHHHHHHHHTTCCSSCEEEEECSSG
T ss_pred CCHHHHHHHHHHHHHHHhcCCEEEEEeeCH
Confidence 999999999999999876788877777763
No 35
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.73 E-value=1.5e-18 Score=185.57 Aligned_cols=142 Identities=15% Similarity=0.212 Sum_probs=102.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|||||||||||++|+|+++ . .|.|.+++. ++.. .... .++.+++|||++ .++.+|
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~--~i~~~~~~~-------~rr~ig~v~Q~~--~lf~~t 109 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGV--SWDSITLEQ-------WRKAFGVIPQKV--FIFSGT 109 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSC--BTTSSCHHH-------HHHTEEEESCCC--CCCSEE
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCE--ECCcCChHH-------HhCCEEEEcCCc--ccCccC
Confidence 5789999999999999999999999985 2 467777762 2211 0011 124689999984 344589
Q ss_pred HHHHHHHHHhhhh-HH-H--HhccHHHHHhHhhhh-----------hcccC-----------CCccEEEEeCCCC-CCHH
Q 007851 253 VMEWVAAEEKYKQ-EV-Q--MKNILPAVADKFLVD-----------QHADQ-----------RGASILCFDEIQT-VDVF 305 (587)
Q Consensus 253 V~eni~~~~~~~~-~~-~--~~~~L~~la~~l~~~-----------LSgGq-----------~~p~LL~LDEPt~-lD~~ 305 (587)
|++|+.+...... .. + ....+..++++++.+ ||||| .+|+||+||||++ ||+.
T Consensus 110 v~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~ 189 (390)
T 3gd7_A 110 FRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPV 189 (390)
T ss_dssp HHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHH
T ss_pred HHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 9999974322111 00 0 112345677888877 99997 7999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+..+..+|+.+. .|.++|++||..
T Consensus 190 ~~~~l~~~l~~~~-~~~tvi~vtHd~ 214 (390)
T 3gd7_A 190 TYQIIRRTLKQAF-ADCTVILCEARI 214 (390)
T ss_dssp HHHHHHHHHHTTT-TTSCEEEECSSS
T ss_pred HHHHHHHHHHHHh-CCCEEEEEEcCH
Confidence 9999999998864 466666666654
No 36
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.72 E-value=6.8e-18 Score=171.49 Aligned_cols=136 Identities=17% Similarity=0.107 Sum_probs=99.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhccccee-eeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRS-SISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig-~v~q~~~~~~~~~ 251 (587)
.. |+.++|+||||||||||+++++|.+ |. .+.|.+++. ++.. . .. ++.++ +++|++. + .+
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~--~~~~-------~-~~-~~~i~~~v~Q~~~--l-~~ 88 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGM--EVRK-------I-RN-YIRYSTNLPEAYE--I-GV 88 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTE--EGGG-------C-SC-CTTEEECCGGGSC--T-TS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCE--ECcc-------h-HH-hhheEEEeCCCCc--c-CC
Confidence 36 8999999999999999999999999 62 467777652 2211 0 11 35689 9999743 3 89
Q ss_pred cHHHHHHHHHhhhh--HHHHhc-----cHH-HHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 252 KVMEWVAAEEKYKQ--EVQMKN-----ILP-AVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 252 tV~eni~~~~~~~~--~~~~~~-----~L~-~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
||.||+.+...... ...... .+. ..+++.+.+||||| .+|+||+||||++ +|+..+..+.
T Consensus 89 tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~ 168 (263)
T 2pjz_A 89 TVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVIS 168 (263)
T ss_dssp BHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHH
T ss_pred cHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHH
Confidence 99999988653211 111111 223 44567788999997 8999999999999 9999999999
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 007851 312 GIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 312 ~Ll~~L~~~G~vvV~TSn~ 330 (587)
++|..+.+ +||++||.
T Consensus 169 ~~L~~~~~---tviivtHd 184 (263)
T 2pjz_A 169 RYIKEYGK---EGILVTHE 184 (263)
T ss_dssp HHHHHSCS---EEEEEESC
T ss_pred HHHHHhcC---cEEEEEcC
Confidence 99988744 55555664
No 37
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.71 E-value=2.7e-17 Score=184.37 Aligned_cols=144 Identities=16% Similarity=0.191 Sum_probs=101.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
++|+.++|+||||||||||+++++|..+| . +|+|.+++. ++... . ....++.+++++|++ .+++.||
T Consensus 367 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p-~--~G~i~~~g~--~~~~~----~--~~~~~~~i~~v~Q~~--~l~~~tv 433 (582)
T 3b5x_A 367 PQGKTVALVGRSGSGKSTIANLFTRFYDV-D--SGSICLDGH--DVRDY----K--LTNLRRHFALVSQNV--HLFNDTI 433 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC-C--CCEEEECCE--EhhhC----C--HHHHhcCeEEEcCCC--ccccccH
Confidence 57899999999999999999999999986 2 356666652 22210 0 011235689999974 3445799
Q ss_pred HHHHHHHH-hhhhHHHHh-----ccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEE-KYKQEVQMK-----NILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~-~~~~~~~~~-----~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
+||+.++. ......+.. ..+.+..+++ ..+||||| .+|+||+||||++ +|+
T Consensus 434 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~ 513 (582)
T 3b5x_A 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDT 513 (582)
T ss_pred HHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 99999864 111111111 1223333333 36899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+.++.+ |.++|++||+.
T Consensus 514 ~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b5x_A 514 ESERAIQAALDELQK-NKTVLVIAHRL 539 (582)
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 999999999999865 77777677763
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.70 E-value=3.3e-17 Score=183.67 Aligned_cols=143 Identities=19% Similarity=0.211 Sum_probs=102.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|..+| .+|+|.+++. ++.. .... .++.+++++|++ .+++.|
T Consensus 367 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~--~~~~~~~~~-------~~~~i~~v~Q~~--~l~~~t 432 (582)
T 3b60_A 367 PAGKTVALVGRSGSGKSTIASLITRFYDI---DEGHILMDGH--DLREYTLAS-------LRNQVALVSQNV--HLFNDT 432 (582)
T ss_dssp CTTCEEEEEECTTSSHHHHHHHHTTTTCC---SEEEEEETTE--ETTTBCHHH-------HHHTEEEECSSC--CCCSSB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhhccCC---CCCeEEECCE--EccccCHHH-------HHhhCeEEccCC--cCCCCC
Confidence 57899999999999999999999999986 3567777662 2211 0011 124689999974 345579
Q ss_pred HHHHHHHHH-hhhhHHHH-----hccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 253 VMEWVAAEE-KYKQEVQM-----KNILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 253 V~eni~~~~-~~~~~~~~-----~~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
|+||+.++. ......+. ...+.+..++++ .+||||| .+|+||+||||++ +|
T Consensus 433 v~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD 512 (582)
T 3b60_A 433 VANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 512 (582)
T ss_dssp HHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCC
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCC
Confidence 999999864 11111111 112334444433 5899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.+++.++.+ |.++|++||+.
T Consensus 513 ~~~~~~i~~~l~~~~~-~~tvi~itH~~ 539 (582)
T 3b60_A 513 TESERAIQAALDELQK-NRTSLVIAHRL 539 (582)
T ss_dssp HHHHHHHHHHHHHHHT-TSEEEEECSCG
T ss_pred HHHHHHHHHHHHHHhC-CCEEEEEeccH
Confidence 9999999999999865 77777777764
No 39
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.69 E-value=4.5e-17 Score=167.72 Aligned_cols=129 Identities=19% Similarity=0.195 Sum_probs=91.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .+|.|.+++ .++|++|++ .+ +..||
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p---~~G~I~~~g---------------------~i~~v~Q~~-~l-~~~tv 115 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELEP---SEGKIKHSG---------------------RISFCSQNS-WI-MPGTI 115 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSCE---EEEEEECCS---------------------CEEEECSSC-CC-CSSBH
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCCC---CCcEEEECC---------------------EEEEEeCCC-cc-CcccH
Confidence 47899999999999999999999999985 356776653 368999974 33 44699
Q ss_pred HHHHHHHHhhhhH--HH--HhccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCHHH
Q 007851 254 MEWVAAEEKYKQE--VQ--MKNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDVFA 306 (587)
Q Consensus 254 ~eni~~~~~~~~~--~~--~~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~ 306 (587)
.||+. +...... .. ....+....+.+ +.+||||| .+|+||+||||++ +|+..
T Consensus 116 ~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~ 194 (290)
T 2bbs_A 116 KENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194 (290)
T ss_dssp HHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHH
Confidence 99998 4211110 00 011122222222 36899997 7999999999999 99999
Q ss_pred HHHHHHH-HHHHHhCCcEEEEecCC
Q 007851 307 IVALSGI-VSRLLSTGTVLVATSNR 330 (587)
Q Consensus 307 a~~L~~L-l~~L~~~G~vvV~TSn~ 330 (587)
+..+.++ +..+. .|.+||++||.
T Consensus 195 ~~~i~~~ll~~~~-~~~tviivtHd 218 (290)
T 2bbs_A 195 EKEIFESCVCKLM-ANKTRILVTSK 218 (290)
T ss_dssp HHHHHHHCCCCCT-TTSEEEEECCC
T ss_pred HHHHHHHHHHHhh-CCCEEEEEecC
Confidence 9999886 44553 47777777775
No 40
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.69 E-value=3.2e-17 Score=184.25 Aligned_cols=143 Identities=18% Similarity=0.226 Sum_probs=102.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|.++| .+|.|.+++. ++.. .... .++.+++++|++ .+++.|
T Consensus 368 ~~G~~~~ivG~sGsGKSTLl~~l~g~~~p---~~G~i~~~g~--~i~~~~~~~-------~~~~i~~v~Q~~--~l~~~t 433 (595)
T 2yl4_A 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDP---ASGTISLDGH--DIRQLNPVW-------LRSKIGTVSQEP--ILFSCS 433 (595)
T ss_dssp CTTCEEEEECCTTSSSTHHHHHHTTSSCC---SEEEEEETTE--ETTTBCHHH-------HHHSEEEECSSC--CCCSSB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCcEEEECCE--EhhhCCHHH-------HHhceEEEccCC--cccCCC
Confidence 57899999999999999999999999986 3567777662 2211 0011 124689999974 345679
Q ss_pred HHHHHHHHHhh---hhHHHHhc-----cHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-
Q 007851 253 VMEWVAAEEKY---KQEVQMKN-----ILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT- 301 (587)
Q Consensus 253 V~eni~~~~~~---~~~~~~~~-----~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~- 301 (587)
|+||+.++... ....+... .+.++.++++ .+||||| .+|+||+||||++
T Consensus 434 v~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~illlDEpts~ 513 (595)
T 2yl4_A 434 IAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513 (595)
T ss_dssp HHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSS
T ss_pred HHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccC
Confidence 99999986432 11111111 1223333332 5899997 7999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 302 VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.....+.+++.++.+ |.++|++||+.
T Consensus 514 LD~~~~~~i~~~l~~~~~-~~tvi~itH~~ 542 (595)
T 2yl4_A 514 LDAENEYLVQEALDRLMD-GRTVLVIAHRL 542 (595)
T ss_dssp CCHHHHHHHHHHHHHHHT-TSEEEEECCCH
T ss_pred CCHHHHHHHHHHHHHHhc-CCEEEEEecCH
Confidence 999999999999999876 67777777763
No 41
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.68 E-value=3e-17 Score=183.95 Aligned_cols=143 Identities=13% Similarity=0.118 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||++++.|.++| .+|+|.+++. ++.. .... .++.+++++|++ .+++.|
T Consensus 365 ~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~--~~~~~~~~~-------~r~~i~~v~Q~~--~l~~~t 430 (578)
T 4a82_A 365 EKGETVAFVGMSGGGKSTLINLIPRFYDV---TSGQILIDGH--NIKDFLTGS-------LRNQIGLVQQDN--ILFSDT 430 (578)
T ss_dssp CTTCEEEEECSTTSSHHHHHTTTTTSSCC---SEEEEEETTE--EGGGSCHHH-------HHHTEEEECSSC--CCCSSB
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCCCC---CCcEEEECCE--EhhhCCHHH-------HhhheEEEeCCC--ccCccc
Confidence 57899999999999999999999999986 3567777663 2211 0011 134689999973 455679
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|+||+.++.......+. ...+.+..+.+ ..+||||| .+|++|+||||++ +|+
T Consensus 431 v~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~ 510 (578)
T 4a82_A 431 VKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510 (578)
T ss_dssp HHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCH
Confidence 99999886432111111 11112223322 35899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+++..+.+ |.++|+++|+.
T Consensus 511 ~~~~~i~~~l~~~~~-~~t~i~itH~l 536 (578)
T 4a82_A 511 ESESIIQEALDVLSK-DRTTLIVAHRL 536 (578)
T ss_dssp HHHHHHHHHHHHHTT-TSEEEEECSSG
T ss_pred HHHHHHHHHHHHHcC-CCEEEEEecCH
Confidence 999999999988854 56666666654
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.68 E-value=3.4e-17 Score=184.16 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=102.5
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.++|+.++|+||||||||||+++++|.++| .+|.|.+++. ++.. .... .++.+++++|++ .+++.
T Consensus 378 i~~G~~~~ivG~sGsGKSTll~~l~g~~~p---~~G~i~~~g~--~i~~~~~~~-------~r~~i~~v~Q~~--~lf~~ 443 (598)
T 3qf4_B 378 IKPGQKVALVGPTGSGKTTIVNLLMRFYDV---DRGQILVDGI--DIRKIKRSS-------LRSSIGIVLQDT--ILFST 443 (598)
T ss_dssp CCTTCEEEEECCTTSSTTHHHHHHTTSSCC---SEEEEEETTE--EGGGSCHHH-------HHHHEEEECTTC--CCCSS
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCcCC---CCeEEEECCE--EhhhCCHHH-------HHhceEEEeCCC--ccccc
Confidence 357899999999999999999999999986 3567777663 2211 0111 124689999974 45678
Q ss_pred cHHHHHHHHHhhhhHH---HH--hccHHHHHhHh-----------hhhhcccC-----------CCccEEEEeCCCC-CC
Q 007851 252 KVMEWVAAEEKYKQEV---QM--KNILPAVADKF-----------LVDQHADQ-----------RGASILCFDEIQT-VD 303 (587)
Q Consensus 252 tV~eni~~~~~~~~~~---~~--~~~L~~la~~l-----------~~~LSgGq-----------~~p~LL~LDEPt~-lD 303 (587)
||+||+.++....... +. ...+.+..+.+ ..+||||| .+|+||+||||++ +|
T Consensus 444 tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD 523 (598)
T 3qf4_B 444 TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVD 523 (598)
T ss_dssp BHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCC
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCC
Confidence 9999998763211110 10 01122333333 35899997 7999999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 304 VFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 304 ~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.....+.+.+.++. +|.++|+++|+.
T Consensus 524 ~~~~~~i~~~l~~~~-~~~t~i~itH~l 550 (598)
T 3qf4_B 524 TKTEKSIQAAMWKLM-EGKTSIIIAHRL 550 (598)
T ss_dssp HHHHHHHHHHHHHHH-TTSEEEEESCCT
T ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence 999999999999986 477777777764
No 43
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.66 E-value=6.8e-17 Score=181.37 Aligned_cols=143 Identities=14% Similarity=0.188 Sum_probs=100.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|.++| .+|.|.+++. ++.. .... .++.+++++|++ .+++.|
T Consensus 367 ~~Ge~~~ivG~sGsGKSTll~~l~g~~~~---~~G~i~i~g~--~i~~~~~~~-------~r~~i~~v~Q~~--~lf~~t 432 (587)
T 3qf4_A 367 KPGSLVAVLGETGSGKSTLMNLIPRLIDP---ERGRVEVDEL--DVRTVKLKD-------LRGHISAVPQET--VLFSGT 432 (587)
T ss_dssp CTTCEEEEECSSSSSHHHHHHTTTTSSCC---SEEEEEESSS--BGGGBCHHH-------HHHHEEEECSSC--CCCSEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCccC---CCcEEEECCE--EcccCCHHH-------HHhheEEECCCC--cCcCcc
Confidence 57899999999999999999999999986 3567777663 2211 0111 124689999974 455679
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHH-----------hHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVA-----------DKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la-----------~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|+||+.++.......+. ...+.+.. .+...+||||| .+|+||+||||++ +|+
T Consensus 433 v~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~ 512 (587)
T 3qf4_A 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDP 512 (587)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCH
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH
Confidence 99999876432111110 01111222 22235899997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.+.++. +|.++|+++|+.
T Consensus 513 ~~~~~i~~~l~~~~-~~~tvi~itH~l 538 (587)
T 3qf4_A 513 ITEKRILDGLKRYT-KGCTTFIITQKI 538 (587)
T ss_dssp HHHHHHHHHHHHHS-TTCEEEEEESCH
T ss_pred HHHHHHHHHHHHhC-CCCEEEEEecCh
Confidence 99999999999874 577776667763
No 44
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.64 E-value=8.6e-16 Score=172.97 Aligned_cols=132 Identities=18% Similarity=0.268 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| ..| .|.+ ...++|++|+. ...+.+||
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p-~~G--~I~~---------------------~~~i~~v~Q~~-~~~~~~tv 434 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEG--KVEW---------------------DLTVAYKPQYI-KAEYEGTV 434 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBS--CCCC---------------------CCCEEEECSSC-CCCCSSBH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCC-Cce--EEEE---------------------eeEEEEEecCc-cCCCCCcH
Confidence 46899999999999999999999999986 233 3422 12579999974 34578999
Q ss_pred HHHHHHH-Hh-hhhHHHHhccH-----HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAE-EK-YKQEVQMKNIL-----PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~-~~-~~~~~~~~~~L-----~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+++... .. ..........+ ...+++.+.+||||| .+|+||+||||++ ||+..+..+.++|
T Consensus 435 ~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l 514 (607)
T 3bk7_A 435 YELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 514 (607)
T ss_dssp HHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence 9988654 11 11111111222 234667788999997 7999999999999 9999999999999
Q ss_pred HHHHh-CCcEEEEecCC
Q 007851 315 SRLLS-TGTVLVATSNR 330 (587)
Q Consensus 315 ~~L~~-~G~vvV~TSn~ 330 (587)
+.+.+ .|.+||++||.
T Consensus 515 ~~l~~~~g~tvi~vsHd 531 (607)
T 3bk7_A 515 RHLMEKNEKTALVVEHD 531 (607)
T ss_dssp HHHHHHTTCEEEEECSC
T ss_pred HHHHHhCCCEEEEEeCC
Confidence 99974 57777777775
No 45
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.64 E-value=3.5e-16 Score=173.85 Aligned_cols=134 Identities=15% Similarity=0.170 Sum_probs=100.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| .. |.|.+. ...+++++|.. ...+..||
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p-~~--G~i~~~--------------------~~~i~~~~q~~-~~~~~~tv 347 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEITA-DE--GSVTPE--------------------KQILSYKPQRI-FPNYDGTV 347 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSSCC-SB--CCEESS--------------------CCCEEEECSSC-CCCCSSBH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CC--cEEEEC--------------------CeeeEeechhc-ccccCCCH
Confidence 46899999999999999999999999986 33 445322 13578888863 23457899
Q ss_pred HHHHHHHHhhh--h-H---HH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 254 MEWVAAEEKYK--Q-E---VQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 254 ~eni~~~~~~~--~-~---~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
.+|+....... . . .. ....+...+++.+.+||||| .+|+||+|||||+ +|+..+..+.++
T Consensus 348 ~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~ 427 (538)
T 3ozx_A 348 QQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKA 427 (538)
T ss_dssp HHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence 99997642111 0 0 00 01123445677889999997 7999999999999 999999999999
Q ss_pred HHHHHh-CCcEEEEecCCC
Q 007851 314 VSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~-~G~vvV~TSn~~ 331 (587)
|.++.+ .|.+||++||..
T Consensus 428 l~~l~~~~g~tvi~vsHdl 446 (538)
T 3ozx_A 428 IKRVTRERKAVTFIIDHDL 446 (538)
T ss_dssp HHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHhCCCEEEEEeCCH
Confidence 999975 577777777753
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.62 E-value=6.3e-16 Score=171.89 Aligned_cols=132 Identities=17% Similarity=0.218 Sum_probs=98.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++| ..| .|.+ ...++|++|+.. ..+.+||
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p-~~G--~i~~---------------------~~~i~~v~Q~~~-~~~~~tv 364 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEP-TEG--KIEW---------------------DLTVAYKPQYIK-ADYEGTV 364 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCC-SBC--CCCC---------------------CCCEEEECSSCC-CCCSSBH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCe--EEEE---------------------CceEEEEecCCc-CCCCCcH
Confidence 36899999999999999999999999986 233 4422 125799999753 3577899
Q ss_pred HHHHHHH-Hhhhh-HHHHh-----ccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHH
Q 007851 254 MEWVAAE-EKYKQ-EVQMK-----NILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIV 314 (587)
Q Consensus 254 ~eni~~~-~~~~~-~~~~~-----~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll 314 (587)
.+++... ..... ..... ..+...+++.+.+||||+ .+|+||+|||||+ +|+..+..+.++|
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l 444 (538)
T 1yqt_A 365 YELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAI 444 (538)
T ss_dssp HHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHH
T ss_pred HHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 8887653 11111 11111 112345677788999996 7999999999999 9999999999999
Q ss_pred HHHHh-CCcEEEEecCC
Q 007851 315 SRLLS-TGTVLVATSNR 330 (587)
Q Consensus 315 ~~L~~-~G~vvV~TSn~ 330 (587)
.++.+ .|.+||++||.
T Consensus 445 ~~l~~~~g~tvi~vsHd 461 (538)
T 1yqt_A 445 RHLMEKNEKTALVVEHD 461 (538)
T ss_dssp HHHHHHHTCEEEEECSC
T ss_pred HHHHHhCCCEEEEEeCC
Confidence 99974 57777777775
No 47
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.59 E-value=1.2e-15 Score=169.58 Aligned_cols=152 Identities=13% Similarity=0.170 Sum_probs=97.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEE-------EEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF-------HFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT 245 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rv-------hf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~ 245 (587)
..+|+.++|+|||||||||||++|+|.++| ..|.... .+.+ ..+.. ...........+++++|...
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p-~~G~~~~~~~~~~~~~~g--~~~~~----~~~~~~~~~~~~~~~~q~~~ 116 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIP-NLCGDNDSWDGVIRAFRG--NELQN----YFEKLKNGEIRPVVKPQYVD 116 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTTTCCSHHHHHHHTTT--STHHH----HHHHHHTTSCCCEEECSCGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCccCcchhhhHHhhCC--ccHHH----HHHHHHHHhhhhhhhhhhhh
Confidence 357999999999999999999999999976 3443100 0111 01110 00000011234677777532
Q ss_pred CC--CCCCcHHHHHHHHHhhhhHHH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 246 NL--PFDSKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 246 ~~--~~~~tV~eni~~~~~~~~~~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
.. ....++.+++..........+ ....+...+++.+.+||||| .+|+||+|||||+ ||+..+..
T Consensus 117 ~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~ 196 (538)
T 1yqt_A 117 LIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLN 196 (538)
T ss_dssp GSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHH
T ss_pred hcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 11 112488888753211000000 01112334667788999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|+.+.+.|++||++||+.
T Consensus 197 l~~~L~~l~~~g~tvi~vsHd~ 218 (538)
T 1yqt_A 197 AARAIRRLSEEGKSVLVVEHDL 218 (538)
T ss_dssp HHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHHhcCCEEEEEeCCH
Confidence 9999999988888777777753
No 48
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.58 E-value=8e-16 Score=170.96 Aligned_cols=158 Identities=13% Similarity=0.143 Sum_probs=92.7
Q ss_pred CCCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEE--EehhHHHHH-HHHHHHhhhhhhcccceeeeeccC--CC
Q 007851 172 APPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFH--FHEAMLKIN-EHMHRLWKNQVAEKSLRSSISGWI--TN 246 (587)
Q Consensus 172 ~~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvh--f~~fm~~v~-~~l~~~~~~~~~~~~~ig~v~q~~--~~ 246 (587)
.+.+|+.++|+|||||||||||++|+|.++|. .|..... .......+. ..+.............+....|.. ..
T Consensus 21 ~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~-~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 21 TPKNNTILGVLGKNGVGKTTVLKILAGEIIPN-FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CCCTTEEEEEECCTTSSHHHHHHHHTTSSCCC-TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhcCCCCC-CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 35679999999999999999999999999863 3432100 000000000 000000000000011222223221 12
Q ss_pred CCCCCcHHHHHHHHHhhhhHHH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHH
Q 007851 247 LPFDSKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSG 312 (587)
Q Consensus 247 ~~~~~tV~eni~~~~~~~~~~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~ 312 (587)
.++..++.+++........... ....+...+++.+.+||||| .+|+||+|||||+ ||+..+..+.+
T Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~ 179 (538)
T 3ozx_A 100 KFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAK 179 (538)
T ss_dssp TTCCSBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHH
T ss_pred hhccCcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHH
Confidence 2334577776543211000000 11122345677788999997 7999999999999 99999999999
Q ss_pred HHHHHHhCCcEEEEecCCC
Q 007851 313 IVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 313 Ll~~L~~~G~vvV~TSn~~ 331 (587)
+|+.+.+ |.+||++||+.
T Consensus 180 ~l~~l~~-g~tii~vsHdl 197 (538)
T 3ozx_A 180 AIRELLK-NKYVIVVDHDL 197 (538)
T ss_dssp HHHHHCT-TSEEEEECSCH
T ss_pred HHHHHhC-CCEEEEEEeCh
Confidence 9999965 88887777764
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.58 E-value=1.2e-15 Score=171.68 Aligned_cols=152 Identities=16% Similarity=0.184 Sum_probs=98.4
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEE-------EEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF-------HFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT 245 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rv-------hf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~ 245 (587)
..+|+.++|+||||||||||+++|+|.++| ..|.... .+.+ ..+....... ......+++++|...
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p-~~G~~~~~~~~~~~~~~G--~~~~~~~~~~----~~~~~~i~~~~q~~~ 186 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIP-NLCEDNDSWDNVIRAFRG--NELQNYFERL----KNGEIRPVVKPQYVD 186 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSSCC-CTTTTCCCHHHHHHHTTT--STHHHHHHHH----HHTSCCCEEECSCGG
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCCCC-CCCccccccchhhheeCC--Eehhhhhhhh----hhhhcceEEeechhh
Confidence 457999999999999999999999999986 3443100 1111 1111100000 011234667777532
Q ss_pred C--CCCCCcHHHHHHHHHhhhhHHH--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHH
Q 007851 246 N--LPFDSKVMEWVAAEEKYKQEVQ--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 246 ~--~~~~~tV~eni~~~~~~~~~~~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~ 309 (587)
. ..+..||.+|+..........+ ....+...+++.+.+||||| .+|+||+|||||+ ||+..+..
T Consensus 187 ~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~ 266 (607)
T 3bk7_A 187 LLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266 (607)
T ss_dssp GGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHH
T ss_pred hchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 1 1223489998864211000000 11123345677888999997 7999999999999 99999999
Q ss_pred HHHHHHHHHhCCcEEEEecCCC
Q 007851 310 LSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+.++|+.+.+.|.+||++||+.
T Consensus 267 l~~~L~~l~~~g~tvIivsHdl 288 (607)
T 3bk7_A 267 VARVIRRLANEGKAVLVVEHDL 288 (607)
T ss_dssp HHHHHHHHHHTTCEEEEECSCH
T ss_pred HHHHHHHHHhcCCEEEEEecCh
Confidence 9999999988888777777753
No 50
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.58 E-value=3.7e-15 Score=180.74 Aligned_cols=143 Identities=15% Similarity=0.183 Sum_probs=100.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||++++.|.++| ..|.|.+++. ++.. ....+ ++.+++|+|++ .+++.|
T Consensus 414 ~~G~~~~ivG~sGsGKSTl~~ll~g~~~~---~~G~i~i~g~--~i~~~~~~~~-------r~~i~~v~Q~~--~l~~~t 479 (1284)
T 3g5u_A 414 KSGQTVALVGNSGCGKSTTVQLMQRLYDP---LDGMVSIDGQ--DIRTINVRYL-------REIIGVVSQEP--VLFATT 479 (1284)
T ss_dssp CTTCEEEEECCSSSSHHHHHHHTTTSSCC---SEEEEEETTE--EGGGSCHHHH-------HHHEEEECSSC--CCCSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCC---CCeEEEECCE--EHHhCCHHHH-------HhheEEEcCCC--ccCCcc
Confidence 57899999999999999999999999986 3467776652 2211 01111 24689999974 556779
Q ss_pred HHHHHHHHHhhhhHHHH-----hccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQM-----KNILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~-----~~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
|+|||.++.......+. ...+.+....++ .+||||| .+|+||+|||||+ +|+
T Consensus 480 i~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~ 559 (1284)
T 3g5u_A 480 IAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559 (1284)
T ss_dssp HHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCH
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 99999987432111111 011122222222 3799997 6999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.....+.+.++.+. +|.++|+.+|+.
T Consensus 560 ~~~~~i~~~l~~~~-~~~t~i~itH~l 585 (1284)
T 3g5u_A 560 ESEAVVQAALDKAR-EGRTTIVIAHRL 585 (1284)
T ss_dssp HHHHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred HHHHHHHHHHHHHc-CCCEEEEEecCH
Confidence 99999999998875 467666666763
No 51
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.55 E-value=4.6e-15 Score=179.90 Aligned_cols=144 Identities=15% Similarity=0.223 Sum_probs=101.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|..+| .+|+|.+++. ++.. .... .++.+++|+|++ .+++.|
T Consensus 1057 ~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p---~~G~I~i~g~--~i~~~~~~~-------~r~~i~~v~Q~~--~l~~~t 1122 (1284)
T 3g5u_A 1057 KKGQTLALVGSSGCGKSTVVQLLERFYDP---MAGSVFLDGK--EIKQLNVQW-------LRAQLGIVSQEP--ILFDCS 1122 (1284)
T ss_dssp CSSSEEEEECSSSTTHHHHHHHHTTSSCC---SEEEEESSSS--CTTSSCHHH-------HTTSCEEEESSC--CCCSSB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCcCC---CCCEEEECCE--EcccCCHHH-------HHhceEEECCCC--cccccc
Confidence 57899999999999999999999999986 3567777663 2211 0111 235789999974 567899
Q ss_pred HHHHHHHHHhhh--hHHHH-----hccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-C
Q 007851 253 VMEWVAAEEKYK--QEVQM-----KNILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 253 V~eni~~~~~~~--~~~~~-----~~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
|+||+.++.... ...+. ...+.+..++++ .+||||| .+|+||+|||||+ +
T Consensus 1123 i~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~l 1202 (1284)
T 3g5u_A 1123 IAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSAL 1202 (1284)
T ss_dssp HHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSC
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999998753211 11110 111222333332 3799997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
|+.....+.++++.+ ..|.++|+.||+..
T Consensus 1203 D~~~~~~i~~~l~~~-~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1203 DTESEKVVQEALDKA-REGRTCIVIAHRLS 1231 (1284)
T ss_dssp CHHHHHHHHHHHHHH-SSSSCEEEECSCTT
T ss_pred CHHHHHHHHHHHHHh-CCCCEEEEEecCHH
Confidence 999999999999875 45776666667653
No 52
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.54 E-value=5.5e-15 Score=179.63 Aligned_cols=142 Identities=13% Similarity=0.186 Sum_probs=100.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||+|||||||+++|.|..+| .+|.|.+++. ++.. ....+ ++.+++|+|+ +.+++.|
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~~~---~~G~I~idG~--~i~~~~~~~l-------r~~i~~v~Q~--~~Lf~~T 507 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYYDV---LKGKITIDGV--DVRDINLEFL-------RKNVAVVSQE--PALFNCT 507 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSSCC---SEEEEEETTE--ETTTSCHHHH-------HHHEEEECSS--CCCCSEE
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccccc---ccCcccCCCc--cchhccHHHH-------hhcccccCCc--ceeeCCc
Confidence 57899999999999999999999999986 3567776652 2211 01112 2468999996 6788999
Q ss_pred HHHHHHHHHhhhhHHHHhc-----cHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 253 VMEWVAAEEKYKQEVQMKN-----ILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~-----~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
++|||.++.......+... .+.+....++ .+||||| ++|+||+||||++ +|.
T Consensus 508 I~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 508 IEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCT
T ss_pred hhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCH
Confidence 9999998754222211111 1122333332 3799997 7999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 305 FAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 305 ~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
.....+.+.|..+.+..++|++||+
T Consensus 588 ~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 588 ESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp TTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred HHHHHHHHHHHHHhCCCEEEEEccc
Confidence 9999999999888754445555544
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.2e-14 Score=163.59 Aligned_cols=131 Identities=18% Similarity=0.161 Sum_probs=94.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
|+.++|+||||||||||+++|+|+++|. .|. . + ....+++++|+. ...+..||.+
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~-~G~--~--------~-------------~~~~i~~~~q~~-~~~~~~tv~e 432 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGALKPD-EGQ--D--------I-------------PKLNVSMKPQKI-APKFPGTVRQ 432 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSSCCS-BCC--C--------C-------------CSCCEEEECSSC-CCCCCSBHHH
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCCCCC-CCc--C--------c-------------cCCcEEEecccc-cccCCccHHH
Confidence 4679999999999999999999999863 332 1 0 013578888863 3445679999
Q ss_pred HHHHHHhh--hhHHHHhcc-----HHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHH
Q 007851 256 WVAAEEKY--KQEVQMKNI-----LPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSR 316 (587)
Q Consensus 256 ni~~~~~~--~~~~~~~~~-----L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~ 316 (587)
++...... ......... +...+++.+.+||||| .+|+||+|||||+ +|+..+..+.++|++
T Consensus 433 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~ 512 (608)
T 3j16_B 433 LFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512 (608)
T ss_dssp HHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 87643211 011111111 2234567778999996 7999999999999 999999999999999
Q ss_pred HHh-CCcEEEEecCCC
Q 007851 317 LLS-TGTVLVATSNRA 331 (587)
Q Consensus 317 L~~-~G~vvV~TSn~~ 331 (587)
+.+ .|.+||++||..
T Consensus 513 l~~~~g~tviivtHdl 528 (608)
T 3j16_B 513 FILHNKKTAFIVEHDF 528 (608)
T ss_dssp HHHHHTCEEEEECSCH
T ss_pred HHHhCCCEEEEEeCCH
Confidence 864 588777777753
No 54
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.52 E-value=3.2e-14 Score=134.57 Aligned_cols=135 Identities=18% Similarity=0.184 Sum_probs=88.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
.+++++|+||||||||||++++++.+.+ ..+ ..+.|... .++...+......
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~~g-~~~~~~~~-~~~~~~~~~~~~~------------------------- 88 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYE-KKG-IRGYFFDT-KDLIFRLKHLMDE------------------------- 88 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHH-HSC-CCCCEEEH-HHHHHHHHHHHHH-------------------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-HcC-CeEEEEEH-HHHHHHHHHHhcC-------------------------
Confidence 4789999999999999999999998752 122 12222211 1221111111000
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
.....+.+.+ .+|++|+||||+. +|......+.+++..+.++|.++|+|||..|
T Consensus 89 ----------------~~~~~~~~~~--------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 89 ----------------GKDTKFLKTV--------LNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp ----------------TCCSHHHHHH--------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred ----------------chHHHHHHHh--------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 0001122223 3689999999984 8999999999999999888999999999999
Q ss_pred cccccCCc------hhHHhHHHHHhhccceeEEec
Q 007851 333 WDLNQDGM------QREIFQKLVAKLEKHCEIIPI 361 (587)
Q Consensus 333 edLy~~gl------~r~~F~p~I~~L~~~~~Vv~l 361 (587)
++|+++++ ....-...++.|...|+++.+
T Consensus 145 ~~~~~~~~~~~~~l~~~~~~~i~~rl~~~~~~i~~ 179 (180)
T 3ec2_A 145 QREEESSVRISADLASRLGENVVSKIYEMNELLVI 179 (180)
T ss_dssp CC---CHHHHHHHHHHHHCHHHHHHHHHHEEEECC
T ss_pred hHhhhhccchhhHHHHHHHHHHHHHHHhcCeeeee
Confidence 99876442 222224567788889998875
No 55
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.52 E-value=3.1e-15 Score=181.76 Aligned_cols=143 Identities=16% Similarity=0.189 Sum_probs=100.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHH-HHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINE-HMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~-~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+|++|||||||+++|.+.++| .. |+|.+++. ++.. .++.+ ++.+++|+|+ +.+|+.|
T Consensus 1103 ~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p-~~--G~I~iDG~--di~~i~~~~l-------R~~i~~V~Qd--p~LF~gT 1168 (1321)
T 4f4c_A 1103 EPGQTLALVGPSGCGKSTVVALLERFYDT-LG--GEIFIDGS--EIKTLNPEHT-------RSQIAIVSQE--PTLFDCS 1168 (1321)
T ss_dssp CTTCEEEEECSTTSSTTSHHHHHTTSSCC-SS--SEEEETTE--ETTTBCHHHH-------HTTEEEECSS--CCCCSEE
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCccC-CC--CEEEECCE--EhhhCCHHHH-------HhheEEECCC--CEeeCcc
Confidence 57899999999999999999999999986 23 55666652 3221 11222 3578999996 5788999
Q ss_pred HHHHHHHHHhh--hhHHHHh-----ccHHHHHhHhh-----------hhhcccC-----------CCccEEEEeCCCC-C
Q 007851 253 VMEWVAAEEKY--KQEVQMK-----NILPAVADKFL-----------VDQHADQ-----------RGASILCFDEIQT-V 302 (587)
Q Consensus 253 V~eni~~~~~~--~~~~~~~-----~~L~~la~~l~-----------~~LSgGq-----------~~p~LL~LDEPt~-l 302 (587)
+++||.++..- ....+.. ..+.++...++ .+||||| ++|+||+|||||+ +
T Consensus 1169 IreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaL 1248 (1321)
T 4f4c_A 1169 IAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSAL 1248 (1321)
T ss_dssp HHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCST
T ss_pred HHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccC
Confidence 99999876321 1111111 11222222222 3699997 7999999999999 9
Q ss_pred CHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 303 DVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 303 D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
|..+...+.+.|+++++ |.|+|+.+||.
T Consensus 1249 D~~tE~~Iq~~l~~~~~-~~TvI~IAHRL 1276 (1321)
T 4f4c_A 1249 DTESEKVVQEALDRARE-GRTCIVIAHRL 1276 (1321)
T ss_dssp TSHHHHHHHHHHTTTSS-SSEEEEECSSS
T ss_pred CHHHHHHHHHHHHHHcC-CCEEEEeccCH
Confidence 99999999888887764 56666666764
No 56
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.7e-14 Score=160.70 Aligned_cols=149 Identities=17% Similarity=0.217 Sum_probs=89.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHH---------HHHHHHHHHhhhhhhccccee--eee
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAML---------KINEHMHRLWKNQVAEKSLRS--SIS 241 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~---------~v~~~l~~~~~~~~~~~~~ig--~v~ 241 (587)
+.+|+.++|+|||||||||||++|+|.++| ..|. |....-.. .+........ ...+. +.+
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P-~~G~--i~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~ 170 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKP-NLGR--FDDPPEWQEIIKYFRGSELQNYFTKML------EDDIKAIIKP 170 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCC-CTTT--TCCSSCHHHHHHHTTTSTHHHHHHHHH------HTSCCCEEEC
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCC-CCce--EecccchhhhhheecChhhhhhhhHHH------HHhhhhhhch
Confidence 467999999999999999999999999986 3443 31100000 0100000000 01111 112
Q ss_pred ccCCCC-----CCCCcHHHHHHHHHhhhhHHHHhc-----cHHHHHhHhhhhhcccC-----------CCccEEEEeCCC
Q 007851 242 GWITNL-----PFDSKVMEWVAAEEKYKQEVQMKN-----ILPAVADKFLVDQHADQ-----------RGASILCFDEIQ 300 (587)
Q Consensus 242 q~~~~~-----~~~~tV~eni~~~~~~~~~~~~~~-----~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt 300 (587)
|..... -...++.+++....... ...... .+...+++.+.+||||| .+|+||+||||+
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPt 249 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKLRMEKS-PEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPS 249 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHHHCCSC-HHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTT
T ss_pred hhhhhhhhhhcchhhHHHHHHhhhhhhH-HHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcc
Confidence 211100 11124555443221100 000111 12334667788999997 799999999999
Q ss_pred C-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 301 T-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 301 ~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+ ||+..+..+.++++.+.+.|.+||++||+.
T Consensus 250 s~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl 281 (608)
T 3j16_B 250 SYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281 (608)
T ss_dssp TTCCHHHHHHHHHHHHGGGTTTCEEEEECSCH
T ss_pred cCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCH
Confidence 9 999999999999999988888877777764
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.47 E-value=2.5e-14 Score=162.76 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=47.7
Q ss_pred HhHhhhhhcccC-----------CCcc--EEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 277 ADKFLVDQHADQ-----------RGAS--ILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~p~--LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+++.+.+||||| .+|+ ||+||||++ ||+..+..|.++|+.+.++|.+||++||..
T Consensus 196 ~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~ 264 (670)
T 3ux8_A 196 LSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 264 (670)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred hcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 356688999997 6777 999999999 999999999999999988888777777753
No 58
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.43 E-value=3.1e-13 Score=158.38 Aligned_cols=127 Identities=16% Similarity=0.164 Sum_probs=90.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHh-ccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYG-ATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g-~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.+|+.++|+|||||||||||++|+| .+. + + .. .. ...+++++|+....++.+|
T Consensus 459 ~~Ge~v~LiGpNGsGKSTLLk~LagG~i~----g--------~--~~-------~~-----~~~~~~v~q~~~~~~~~lt 512 (986)
T 2iw3_A 459 KRARRYGICGPNGCGKSTLMRAIANGQVD----G--------F--PT-------QE-----ECRTVYVEHDIDGTHSDTS 512 (986)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHTCST----T--------C--CC-------TT-----TSCEEETTCCCCCCCTTSB
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcC----C--------C--cc-------cc-----ceeEEEEcccccccccCCc
Confidence 4789999999999999999999985 221 1 0 00 00 0124666665445677899
Q ss_pred HHHHHHHHHhhhh-HHHH-----hccH-HHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHH
Q 007851 253 VMEWVAAEEKYKQ-EVQM-----KNIL-PAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGI 313 (587)
Q Consensus 253 V~eni~~~~~~~~-~~~~-----~~~L-~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~L 313 (587)
|.+|+.+. ..+ .... ...+ ....++.+.+||||| .+|+||+||||++ ||+..+..|.++
T Consensus 513 v~e~l~~~--~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~ 590 (986)
T 2iw3_A 513 VLDFVFES--GVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNY 590 (986)
T ss_dssp HHHHHHTT--CSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHH
T ss_pred HHHHHHHh--hcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHH
Confidence 99999751 100 1111 1123 346778889999997 7999999999999 999999999999
Q ss_pred HHHHHhCCcEEEEecCCC
Q 007851 314 VSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 314 l~~L~~~G~vvV~TSn~~ 331 (587)
|.. .|.+||++||..
T Consensus 591 L~~---~g~tvIivSHdl 605 (986)
T 2iw3_A 591 LNT---CGITSITISHDS 605 (986)
T ss_dssp HHH---SCSEEEEECSCH
T ss_pred HHh---CCCEEEEEECCH
Confidence 987 577777777753
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.39 E-value=9.3e-13 Score=154.33 Aligned_cols=51 Identities=14% Similarity=0.182 Sum_probs=40.5
Q ss_pred HhHhhhhhcccC-----------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 277 ADKFLVDQHADQ-----------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.++.+.+||||| .+|+||+|||||+ ||+.....|.++|..+ |.+||++||.
T Consensus 895 ~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD 957 (986)
T 2iw3_A 895 SHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHS 957 (986)
T ss_dssp HHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSC
T ss_pred cCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECC
Confidence 466678999997 7999999999999 9999988777777554 4566556664
No 60
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.36 E-value=4.9e-13 Score=152.17 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=58.9
Q ss_pred CCcHHHHHHHHHhhhhHHHHhccHHH------HHhHhhhhhcccC-----------CC---ccEEEEeCCCC-CCHHHHH
Q 007851 250 DSKVMEWVAAEEKYKQEVQMKNILPA------VADKFLVDQHADQ-----------RG---ASILCFDEIQT-VDVFAIV 308 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~~~~~~~~L~~------la~~l~~~LSgGq-----------~~---p~LL~LDEPt~-lD~~~a~ 308 (587)
.+||.+|+.+.............+.. .+++.+.+||||| .+ |+||+|||||+ ||+..+.
T Consensus 504 ~ltv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~ 583 (670)
T 3ux8_A 504 DMTVEDALDFFASIPKIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIA 583 (670)
T ss_dssp TSBHHHHHHHTTTCHHHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHH
T ss_pred hCCHHHHHHHHHHhhhHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHH
Confidence 47899998775432211111111111 2356678999997 34 57999999999 9999999
Q ss_pred HHHHHHHHHHhCCcEEEEecCCC
Q 007851 309 ALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 309 ~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+.++|.++.+.|.+||+++|..
T Consensus 584 ~i~~~l~~l~~~g~tvi~vtHd~ 606 (670)
T 3ux8_A 584 RLLDVLHRLVDNGDTVLVIEHNL 606 (670)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCH
Confidence 99999999988888777777764
No 61
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.35 E-value=3.2e-13 Score=132.35 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=81.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
+|+.++|+||||||||||+++++|. +| ..|.... ... . ......++.+++++|+. .
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl-~p-~~G~I~~--~~~----~-------~~~~~~~~~ig~v~q~~---------~ 76 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ-AL-QSKQVSR--IIL----T-------RPAVEAGEKLGFLPGTL---------N 76 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH-HH-HTTSCSE--EEE----E-------ECSCCTTCCCCSSCC------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC-CC-cCCeeee--EEe----c-------CCchhhhcceEEecCCH---------H
Confidence 5799999999999999999999999 75 3444321 110 0 00001234688998863 3
Q ss_pred HHH-HHHHhhhhHH-H--HhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCCCCHHHHHHHHHHHHHHHh
Q 007851 255 EWV-AAEEKYKQEV-Q--MKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQTVDVFAIVALSGIVSRLLS 319 (587)
Q Consensus 255 eni-~~~~~~~~~~-~--~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~ 319 (587)
+|+ .+........ . ....+..+.+. ..|| .+|+||+||||++- ....+.++|..+ +
T Consensus 77 enl~~~~~~~~~~~~~~~~~~~~~~~l~~-----glGq~qrv~lAraL~~~p~lllLDEPts~---~~~~l~~~l~~l-~ 147 (208)
T 3b85_A 77 EKIDPYLRPLHDALRDMVEPEVIPKLMEA-----GIVEVAPLAYMRGRTLNDAFVILDEAQNT---TPAQMKMFLTRL-G 147 (208)
T ss_dssp ---CTTTHHHHHHHTTTSCTTHHHHHHHT-----TSEEEEEGGGGTTCCBCSEEEEECSGGGC---CHHHHHHHHTTB-C
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHh-----CCchHHHHHHHHHHhcCCCEEEEeCCccc---cHHHHHHHHHHh-c
Confidence 444 2211000000 0 00112222222 2254 79999999999988 677788888888 6
Q ss_pred CCcEEEEecCCCccc-cc--cCCchhHHhHHHHHhhc--cceeEEecCCc
Q 007851 320 TGTVLVATSNRAPWD-LN--QDGMQREIFQKLVAKLE--KHCEIIPIGSE 364 (587)
Q Consensus 320 ~G~vvV~TSn~~Ped-Ly--~~gl~r~~F~p~I~~L~--~~~~Vv~l~~~ 364 (587)
+|.+||+||+....+ .| +|| +..+++.++ ..+.++.++.+
T Consensus 148 ~g~tiivtHd~~~~~~~~~~~~G-----~~~~~~~~~~~~~~~~~~~~~~ 192 (208)
T 3b85_A 148 FGSKMVVTGDITQVDLPGGQKSG-----LRLVRHILRGVDDVHFSELTSS 192 (208)
T ss_dssp TTCEEEEEEC------------C-----CHHHHHHTTTCTTEEEEECCGG
T ss_pred CCCEEEEECCHHHHhCcCCCCCc-----HHHHHHHhcCCCCccEEEeecc
Confidence 788777444432212 12 244 344555565 45666666543
No 62
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.29 E-value=1.3e-12 Score=125.32 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=56.4
Q ss_pred CccEEEEeCCCC--CCHHHHH-HHHHHHHHHHhCCcEEEEecCCCccccccC-------CchhHHhHHHHHhhccceeEE
Q 007851 290 GASILCFDEIQT--VDVFAIV-ALSGIVSRLLSTGTVLVATSNRAPWDLNQD-------GMQREIFQKLVAKLEKHCEII 359 (587)
Q Consensus 290 ~p~LL~LDEPt~--lD~~~a~-~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~-------gl~r~~F~p~I~~L~~~~~Vv 359 (587)
++++|||||+.. .+..... .+..++......+..+|+|||..|++|... +.++....+++++|.++|.++
T Consensus 115 ~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~~~~~l~~~~~~~~~~~~~~~~~~~~~~Rl~~~~~~~ 194 (202)
T 2w58_A 115 KVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTYSQRGEEEKVKAARIMERIRYLAYPI 194 (202)
T ss_dssp HSSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESSCHHHHHHHSCCCC-----CCHHHHHHHHHHHHEEEE
T ss_pred CCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCCCHHHHHHHHhhhccCcchhHHHHHHHHHHHHhceEE
Confidence 467999999965 3322233 445677777677788899999999988752 123445778899999999999
Q ss_pred ecCCchhhh
Q 007851 360 PIGSEVDYR 368 (587)
Q Consensus 360 ~l~~~~DyR 368 (587)
.++++ |||
T Consensus 195 ~~~g~-~~R 202 (202)
T 2w58_A 195 EITGP-NRR 202 (202)
T ss_dssp ECCSC-CCC
T ss_pred eecCC-CCC
Confidence 99875 887
No 63
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.25 E-value=3e-12 Score=130.30 Aligned_cols=132 Identities=11% Similarity=0.133 Sum_probs=79.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHH
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWV 257 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni 257 (587)
.++|+|||||||||||++|+|...+. .+.+.+.+. ++ . .....+.+++++|. ..+++.+||.+|+
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~--~i-------~--~~~~~~~i~~v~q~-~~~~~~ltv~d~~ 68 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREE--KI-------P--KTVEIKAIGHVIEE-GGVKMKLTVIDTP 68 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------C-------C--CCCSCCEEEESCC-----CCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCc--cc-------C--cceeeeeeEEEeec-CCCcCCceEEech
Confidence 58899999999999999999998752 345554431 11 1 11123568999986 4566778999998
Q ss_pred HHHHhhhhH---HH-HhccHHHHHhHhhhhhcccCC--------CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEE
Q 007851 258 AAEEKYKQE---VQ-MKNILPAVADKFLVDQHADQR--------GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVL 324 (587)
Q Consensus 258 ~~~~~~~~~---~~-~~~~L~~la~~l~~~LSgGq~--------~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vv 324 (587)
.++...... .. .........+.+..+||+|+. .+.++++|||+. +|+.+. .+++.|.+. +.+
T Consensus 69 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~----~~l~~L~~~-~~v 143 (270)
T 3sop_A 69 GFGDQINNENCWEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL----EFMKHLSKV-VNI 143 (270)
T ss_dssp C--CCSBCTTCSHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH----HHHHHHHTT-SEE
T ss_pred hhhhhcccHHHHHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH----HHHHHHHhc-CcE
Confidence 876432211 01 111224567778889999984 678999999987 998884 455556555 544
Q ss_pred EEecC
Q 007851 325 VATSN 329 (587)
Q Consensus 325 V~TSn 329 (587)
|+..|
T Consensus 144 I~Vi~ 148 (270)
T 3sop_A 144 IPVIA 148 (270)
T ss_dssp EEEET
T ss_pred EEEEe
Confidence 33334
No 64
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.24 E-value=5.8e-11 Score=125.74 Aligned_cols=51 Identities=12% Similarity=0.080 Sum_probs=44.4
Q ss_pred hhhhhcccC-----------------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 280 FLVDQHADQ-----------------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 280 l~~~LSgGq-----------------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+.+||||+ .+|++|+||||++ +|+.....+.++|..+.+.|.+||++||.
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 455899996 3999999999999 99999999999999998888877777775
No 65
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.23 E-value=7.4e-12 Score=119.59 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=40.7
Q ss_pred CCccEEEEeC--CCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC-CccccccCCchhHHhHHHHHhhccc--eeEEecC
Q 007851 289 RGASILCFDE--IQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR-APWDLNQDGMQREIFQKLVAKLEKH--CEIIPIG 362 (587)
Q Consensus 289 ~~p~LL~LDE--Pt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~-~PedLy~~gl~r~~F~p~I~~L~~~--~~Vv~l~ 362 (587)
.+|++|+||| |+. +|+.....+.+++.. .+.++|+++|. +. .++++.+..+ |+++++.
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~---~~~~~i~~~H~~h~-------------~~~~~~i~~r~~~~i~~~~ 161 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHD---PNVNVVATIPIRDV-------------HPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTC---TTSEEEEECCSSCC-------------SHHHHHHHTCTTCEEEECC
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhc---CCCeEEEEEccCCC-------------chHHHHHHhcCCcEEEEec
Confidence 5899999999 998 999888777777754 46645555542 21 1245555555 7888876
Q ss_pred Cc
Q 007851 363 SE 364 (587)
Q Consensus 363 ~~ 364 (587)
..
T Consensus 162 ~~ 163 (178)
T 1ye8_A 162 PE 163 (178)
T ss_dssp TT
T ss_pred Cc
Confidence 43
No 66
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.22 E-value=3e-11 Score=128.76 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=40.2
Q ss_pred hcccC-----------CCc--cEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 284 QHADQ-----------RGA--SILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 284 LSgGq-----------~~p--~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
||||| .+| +||+||||++ ||+..+..|.++|..+. +|.+||++||.
T Consensus 296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~ 355 (415)
T 4aby_A 296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHL 355 (415)
T ss_dssp SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSC
T ss_pred cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCc
Confidence 79997 588 9999999999 99999999999999997 57766666675
No 67
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.22 E-value=7.4e-12 Score=116.14 Aligned_cols=96 Identities=20% Similarity=0.284 Sum_probs=70.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
+++.++|+||||+|||||++++++.+.+ .+...+.+... + . .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~--~g~~~~~~~~~--~-------~---------------------~------ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE--AGKNAAYIDAA--S-------M---------------------P------ 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT--TTCCEEEEETT--T-------S---------------------C------
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh--cCCcEEEEcHH--H-------h---------------------h------
Confidence 5789999999999999999999998753 23212222210 0 0 0
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcE-EEEecCCCcc
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTV-LVATSNRAPW 333 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~v-vV~TSn~~Pe 333 (587)
.. .+. .+|+|||+|||+.++......|..++..+.++|.+ +|+|||..|.
T Consensus 77 ---------------~~-------~~~-------~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 77 ---------------LT-------DAA-------FEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQ 127 (149)
T ss_dssp ---------------CC-------GGG-------GGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTT
T ss_pred ---------------HH-------HHH-------hCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHH
Confidence 00 011 35899999999997776688999999999988876 8899999998
Q ss_pred cccc
Q 007851 334 DLNQ 337 (587)
Q Consensus 334 dLy~ 337 (587)
+|..
T Consensus 128 ~l~~ 131 (149)
T 2kjq_A 128 QLVI 131 (149)
T ss_dssp TSSC
T ss_pred Hccc
Confidence 8654
No 68
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.21 E-value=2.8e-12 Score=126.18 Aligned_cols=45 Identities=20% Similarity=0.101 Sum_probs=35.7
Q ss_pred CCccEEEEeCCCC-CC-----HHHHHHHHHHHHHHHhCCcEEEEecCCCcc
Q 007851 289 RGASILCFDEIQT-VD-----VFAIVALSGIVSRLLSTGTVLVATSNRAPW 333 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD-----~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Pe 333 (587)
.+|++|++|||++ +| ......+..++..+.+.|++||++||...+
T Consensus 134 ~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~ 184 (251)
T 2ehv_A 134 INAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDP 184 (251)
T ss_dssp TTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC--
T ss_pred hCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCC
Confidence 5799999999998 65 555666999999998889988888887544
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.19 E-value=7.4e-12 Score=118.15 Aligned_cols=50 Identities=12% Similarity=0.059 Sum_probs=39.5
Q ss_pred HHHhHhhhhhcccCCCccEEEEeCCCC-CCHH----------------HHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 275 AVADKFLVDQHADQRGASILCFDEIQT-VDVF----------------AIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 275 ~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~----------------~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|..+. .+|++|+||||++ +|+. ....+.+++..+.++|.++|+++|..
T Consensus 93 ~iAral~-------~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~ 159 (171)
T 4gp7_A 93 EMAKDYH-------CFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSP 159 (171)
T ss_dssp HHHHHTT-------CEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSH
T ss_pred HHHHHcC-------CcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCH
Confidence 4566654 6899999999998 9998 55888888888887788766666653
No 70
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.18 E-value=1.2e-10 Score=136.20 Aligned_cols=53 Identities=13% Similarity=0.293 Sum_probs=44.9
Q ss_pred hHhhhhhcccC-----------C---CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 278 DKFLVDQHADQ-----------R---GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 278 ~~l~~~LSgGq-----------~---~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+.+.+||||| . +|+||+|||||+ ||+.+...|.++|.++.+.|.+||+++|+
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 34567899996 3 468999999999 99999999999999999888877777775
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.14 E-value=8.5e-13 Score=144.01 Aligned_cols=129 Identities=11% Similarity=0.074 Sum_probs=80.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceE-E-EEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCC--CCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQ-R-FHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWIT--NLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~-r-vhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~--~~~~ 249 (587)
.+|+.++|+||||||||||+++|+|.+++ .. + + |.+++ + .++.+++++|... ....
T Consensus 136 ~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p-~~--G~~pI~vdg---~--------------~~~~i~~vpq~~~l~~~~~ 195 (460)
T 2npi_A 136 FEGPRVVIVGGSQTGKTSLSRTLCSYALK-FN--AYQPLYINL---D--------------PQQPIFTVPGCISATPISD 195 (460)
T ss_dssp SSCCCEEEEESTTSSHHHHHHHHHHTTHH-HH--CCCCEEEEC---C--------------TTSCSSSCSSCCEEEECCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCcccc-cC--CceeEEEcC---C--------------ccCCeeeeccchhhccccc
Confidence 36899999999999999999999999875 23 4 4 55543 1 1245788888743 2334
Q ss_pred CCcHHHHHHHHHhh-hhH---HHHh-----ccHHHHHhHhhhhhcccC-------------CCccE----EEEeC-CCC-
Q 007851 250 DSKVMEWVAAEEKY-KQE---VQMK-----NILPAVADKFLVDQHADQ-------------RGASI----LCFDE-IQT- 301 (587)
Q Consensus 250 ~~tV~eni~~~~~~-~~~---~~~~-----~~L~~la~~l~~~LSgGq-------------~~p~L----L~LDE-Pt~- 301 (587)
.+++.+|+ ++... .+. .... ..+...++ ..+||||+ .+|++ |+||| |++
T Consensus 196 ~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~ 272 (460)
T 2npi_A 196 ILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQ 272 (460)
T ss_dssp CCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGG
T ss_pred ccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccc
Confidence 46888877 53321 000 0000 01111122 45666664 58999 99999 998
Q ss_pred CCHHHHHHHHHHHHHHHhCCc-EEEEecC
Q 007851 302 VDVFAIVALSGIVSRLLSTGT-VLVATSN 329 (587)
Q Consensus 302 lD~~~a~~L~~Ll~~L~~~G~-vvV~TSn 329 (587)
+|+. ...|.++++.+ |. +||+||+
T Consensus 273 LD~~-~~~l~~l~~~~---~~tviiVth~ 297 (460)
T 2npi_A 273 LDEN-LAELHHIIEKL---NVNIMLVLCS 297 (460)
T ss_dssp SCSS-CHHHHHHHHHT---TCCEEEEECC
T ss_pred cChh-HHHHHHHHHHh---CCCEEEEEcc
Confidence 9998 55666666543 55 4455544
No 72
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.13 E-value=9.6e-11 Score=136.66 Aligned_cols=54 Identities=19% Similarity=0.287 Sum_probs=46.3
Q ss_pred HhHhhhhhcccC-----------CC---ccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 277 ADKFLVDQHADQ-----------RG---ASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~---p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+++.+.+||||+ .+ |+||+|||||+ +|+.+...|.++|..+.+.|.+||++||.
T Consensus 839 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 907 (972)
T 2r6f_A 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 907 (972)
T ss_dssp TTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 455677999996 33 69999999999 99999999999999999888877777775
No 73
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.13 E-value=7e-11 Score=137.02 Aligned_cols=53 Identities=17% Similarity=0.347 Sum_probs=46.1
Q ss_pred hHhhhhhcccC-----------C---CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 278 DKFLVDQHADQ-----------R---GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 278 ~~l~~~LSgGq-----------~---~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
++.+.+||||+ . +|+||+|||||+ +|+.+...|.++|..|.+.|.+||++||.
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHd 792 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 55677999996 4 379999999999 99999999999999999888877777775
No 74
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=99.12 E-value=9.3e-12 Score=128.84 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=56.0
Q ss_pred CccEEEEeCCCC--CCHHHHH-HHHHHHHHHHhCCcEEEEecCCCccccccC------CchhHHhHHHHHhhccceeEEe
Q 007851 290 GASILCFDEIQT--VDVFAIV-ALSGIVSRLLSTGTVLVATSNRAPWDLNQD------GMQREIFQKLVAKLEKHCEIIP 360 (587)
Q Consensus 290 ~p~LL~LDEPt~--lD~~~a~-~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~------gl~r~~F~p~I~~L~~~~~Vv~ 360 (587)
+++|||+||+.. .+..... .+..++......+..+|+|||.+|++|... |.++....+++++|.++|.++.
T Consensus 214 ~~~lLiiDdig~~~~~~~~~~~ll~~ll~~r~~~~~~~IitSN~~~~~l~~~~~~~~~g~~~~~~~~i~dRl~~~~~~i~ 293 (308)
T 2qgz_A 214 NVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEELPTFFTSNYSFADLERKWATIKGSDETWQAKRVMERVRYLAREFH 293 (308)
T ss_dssp TSSEEEEETCCC------CTTTTHHHHHHHHHHHTCCEEEEESSCHHHHHTTCC--------CCCCSHHHHHHHHEEEEE
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHhhccCccchhhhHHHHHHHHHhCEEEE
Confidence 578999999976 4433333 455588776656678899999999998763 3333345678999999999999
Q ss_pred cCCchhhhhh
Q 007851 361 IGSEVDYRRL 370 (587)
Q Consensus 361 l~~~~DyR~~ 370 (587)
++|+ +||..
T Consensus 294 l~g~-s~R~~ 302 (308)
T 2qgz_A 294 LEGA-NRRLE 302 (308)
T ss_dssp CCSC-CCC--
T ss_pred ecCC-ccccc
Confidence 9987 89974
No 75
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.10 E-value=8.7e-11 Score=129.96 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=87.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHH--HHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCC--CC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDM--FYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNL--PF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l--~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~--~~ 249 (587)
++|+.++|+||||||||||+++ ++|+.++ ..+...+.+.+ ....+... .+.+|+++|+.... +.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~-~~g~i~v~g~~----~~~~~~~~-------~~~~g~~~q~~~~~~~l~ 104 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEF-DEPGVFVTFEE----TPQDIIKN-------ARSFGWDLAKLVDEGKLF 104 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHH-CCCEEEEESSS----CHHHHHHH-------HGGGTCCHHHHHHTTSEE
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEEeC----CHHHHHHH-------HHHcCCChHHhhccCcEE
Confidence 4789999999999999999999 5788864 23334443332 11111111 13456776653210 00
Q ss_pred CCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC------CCHHHHHHHHHHHHHHHhCCcE
Q 007851 250 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT------VDVFAIVALSGIVSRLLSTGTV 323 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~------lD~~~a~~L~~Ll~~L~~~G~v 323 (587)
..++.+ ..... ..-....+..++++++.+||+|+ |++|+||||++ +|+..+..|.++++.+.+.|++
T Consensus 105 ~~~~~~----~~~~~-~~l~~~~l~~~~~~~~~~LS~g~--~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~t 177 (525)
T 1tf7_A 105 ILDASP----DPEGQ-EVVGGFDLSALIERINYAIQKYR--ARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGAT 177 (525)
T ss_dssp EEECCC----CSSCC-SCCSSHHHHHHHHHHHHHHHHHT--CSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCE
T ss_pred EEecCc----ccchh-hhhcccCHHHHHHHHHHHHHHcC--CCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCE
Confidence 000000 00000 00001124567788888999875 78999999986 4888999999999999888998
Q ss_pred EEEecCCCcc
Q 007851 324 LVATSNRAPW 333 (587)
Q Consensus 324 vV~TSn~~Pe 333 (587)
||+++|+..+
T Consensus 178 vl~itH~~~~ 187 (525)
T 1tf7_A 178 TVMTTERIEE 187 (525)
T ss_dssp EEEEEECSSS
T ss_pred EEEEecCCCC
Confidence 8888887644
No 76
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.09 E-value=3e-10 Score=132.90 Aligned_cols=54 Identities=13% Similarity=0.224 Sum_probs=46.1
Q ss_pred HhHhhhhhcccC-----------CC---ccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 277 ADKFLVDQHADQ-----------RG---ASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~---p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+++.+.+||||+ .+ |+||+|||||+ +|+.+...|.++|..+.+.|.+||++||.
T Consensus 857 l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHd 925 (993)
T 2ygr_A 857 LGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHN 925 (993)
T ss_dssp TTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred ccCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 345677999996 33 69999999999 99999999999999998888877777775
No 77
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.08 E-value=2e-12 Score=125.43 Aligned_cols=142 Identities=8% Similarity=-0.154 Sum_probs=84.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.++. +...+.+. . +.........++++||+.. .++.+++
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~~-i~~~~~~~--~------------~~~~~~~~~~i~~~~q~~~-~~~~~~~ 81 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSAT--T------------RAPRPGEVDGVDYHFIDPT-RFQQLID 81 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEE--S------------SCCCTTCCBTTTBEECCHH-HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc-eEEccccc--c------------cCCcccccCCCeeEecCHH-HHHHHHh
Confidence 57899999999999999999999999852 21111110 0 0000011245677777532 2233344
Q ss_pred HHHHHHH----H--hhhh----H--HHH-----------hccHHHHHhHhhhhhcccCCCccEEEEeCCCC-C----CHH
Q 007851 254 MEWVAAE----E--KYKQ----E--VQM-----------KNILPAVADKFLVDQHADQRGASILCFDEIQT-V----DVF 305 (587)
Q Consensus 254 ~eni~~~----~--~~~~----~--~~~-----------~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-l----D~~ 305 (587)
.+++... . ..++ . ... ...+..+++.++.+||.-..+|++++||||+. + |+.
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~ 161 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADV 161 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHH
Confidence 3333110 0 0000 0 000 01234556777777876667899999999986 4 788
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 306 AIVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 306 ~a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.+..+.+++.++.+ .|.++|+++|..
T Consensus 162 ~~~~l~~~l~~l~~~~g~tvi~vtHdl 188 (207)
T 1znw_A 162 IQRRLDTARIELAAQGDFDKVVVNRRL 188 (207)
T ss_dssp HHHHHHHHHHHHHGGGGSSEEEECSSH
T ss_pred HHHHHHHHHHHHhhhccCcEEEECCCH
Confidence 88899999999975 477666666653
No 78
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.03 E-value=1.7e-10 Score=111.94 Aligned_cols=142 Identities=12% Similarity=0.107 Sum_probs=71.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcc----cceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIV----KHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~----~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
++|+.++|+||||||||||+++|+|.+.++. ..++.+.+..........+... +|. ..+.+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~~~~i~~~--------------~~~-~~~~~ 87 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREI--------------AQN-RGLDP 87 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHH--------------HHH-TTSCH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCCHHHHHHH--------------HHH-cCCCH
Confidence 4689999999999999999999999654311 1233555544210001111111 111 01111
Q ss_pred CCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHH--------H----HHHHHHHHHH
Q 007851 250 DSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVF--------A----IVALSGIVSR 316 (587)
Q Consensus 250 ~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~--------~----a~~L~~Ll~~ 316 (587)
.++.+|+.+........ ....+.. +......+.....+|++|++|||+. +|+. . ...+.+.|..
T Consensus 88 -~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~ 164 (231)
T 4a74_A 88 -DEVLKHIYVARAFNSNH-QMLLVQQ-AEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHR 164 (231)
T ss_dssp -HHHHHTEEEEECCSHHH-HHHHHHH-HHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhcEEEEecCChHH-HHHHHHH-HHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHH
Confidence 15556554321111100 0000111 1111111111135899999999998 6652 1 2245555555
Q ss_pred HHh-CCcEEEEecCCCcc
Q 007851 317 LLS-TGTVLVATSNRAPW 333 (587)
Q Consensus 317 L~~-~G~vvV~TSn~~Pe 333 (587)
+.+ .|++||+++|...+
T Consensus 165 ~~~~~g~tvi~vtH~~~~ 182 (231)
T 4a74_A 165 LANLYDIAVFVTNQVQAN 182 (231)
T ss_dssp HHHHHTCEEEEEEECC--
T ss_pred HHHHCCCeEEEEeecccC
Confidence 554 48888887776533
No 79
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.02 E-value=2.1e-10 Score=120.83 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=79.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc--CCcccc--eEE-EEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT--EGIVKH--RQR-FHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l--~~~~~~--k~r-vhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
++|+.+.|+||||||||||+..+++.+ ++ ..| ++. +.+..-......++. +++|.. .+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~-~~Gg~~G~vi~i~~e~~~~~~~i~--------------~i~q~~-~~- 191 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPP-EEGGLNGSVIWIDTENTFRPERIR--------------EIAQNR-GL- 191 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCG-GGTSCSCEEEEEESSSCCCHHHHH--------------HHHHTT-TC-
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccch-hcCCCCCeEEEEeCCCCCCHHHHH--------------HHHHHc-CC-
Confidence 578999999999999999999999987 43 221 234 444331100011121 122211 11
Q ss_pred CCCcHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHH--------H----HHHHHHHHH
Q 007851 249 FDSKVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVF--------A----IVALSGIVS 315 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~--------~----a~~L~~Ll~ 315 (587)
+..++.+|+.+...... ..... +...+..++.++|+|+.+|++|++|||++ +|+. . ...+.+.|.
T Consensus 192 ~~~~v~~ni~~~~~~~~-~~~~~-~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~ 269 (349)
T 1pzn_A 192 DPDEVLKHIYVARAFNS-NHQML-LVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLH 269 (349)
T ss_dssp CHHHHGGGEEEEECCSH-HHHHH-HHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHhhCEEEEecCCh-HHHHH-HHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHH
Confidence 11244444433211100 00111 22346677889999999999999999998 7663 1 233344444
Q ss_pred HHHh-CCcEEEEecCCC
Q 007851 316 RLLS-TGTVLVATSNRA 331 (587)
Q Consensus 316 ~L~~-~G~vvV~TSn~~ 331 (587)
.+.+ .|++||+|+|..
T Consensus 270 ~la~~~~~tvii~~h~~ 286 (349)
T 1pzn_A 270 RLANLYDIAVFVTNQVQ 286 (349)
T ss_dssp HHHHHTTCEEEEEEECC
T ss_pred HHHHHcCcEEEEEcccc
Confidence 5444 588888887754
No 80
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.00 E-value=6.6e-10 Score=115.27 Aligned_cols=51 Identities=12% Similarity=0.217 Sum_probs=42.3
Q ss_pred hhhhhcccC---------------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 280 FLVDQHADQ---------------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 280 l~~~LSgGq---------------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+.+||+|+ .+|+||+||||++ ||+.....|.+++..+ ..|.++|++||+.
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~-~~~~~vi~~tH~~ 282 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN-SKHTQFIVITHNK 282 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH-TTTSEEEEECCCT
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-cCCCeEEEEECCH
Confidence 356899995 2689999999999 9999999999999998 4577777777763
No 81
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.95 E-value=7.8e-11 Score=121.77 Aligned_cols=140 Identities=10% Similarity=0.052 Sum_probs=79.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH-----HHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN-----EHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~-----~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.+|+.++|+||||||||||+++++|.+++ .. ++|.+.+. ++. +.+..+. .+..+++++|+....+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~--g~V~l~g~--d~~r~~a~~ql~~~~-----~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EG--TKVLMAAG--DTFRAAASDQLEIWA-----ERTGCEIVVAEGDKAK 167 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHHHH-TT--CCEEEECC--CCSCHHHHHHHHHHH-----HHHTCEEECCC--CCC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHH-cC--CeEEEEee--cccchhHHHHHHHHH-----HhcCceEEEecCCccC
Confidence 46899999999999999999999999874 23 44554431 111 1111111 1235789998743256
Q ss_pred CCCcHHHHHHHHHhhhhHHH-H-hccHHHHHhHhhhhhccc--------CCCcc--EEEEeCCCC-CCHHHHHHHHHHHH
Q 007851 249 FDSKVMEWVAAEEKYKQEVQ-M-KNILPAVADKFLVDQHAD--------QRGAS--ILCFDEIQT-VDVFAIVALSGIVS 315 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~~-~-~~~L~~la~~l~~~LSgG--------q~~p~--LL~LDEPt~-lD~~~a~~L~~Ll~ 315 (587)
+..++.+|+.++........ . ...+....+.++.+||.- ..+|+ +|++| |++ +|+... +.
T Consensus 168 ~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~~------~~ 240 (302)
T 3b9q_A 168 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AR 240 (302)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH------HH
T ss_pred HHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH------HH
Confidence 67899999987532110000 0 000001112222223200 15799 99999 998 987654 24
Q ss_pred HHHh-CCcEEEEecCC
Q 007851 316 RLLS-TGTVLVATSNR 330 (587)
Q Consensus 316 ~L~~-~G~vvV~TSn~ 330 (587)
.+.+ .|.++|+.||.
T Consensus 241 ~~~~~~g~t~iiiThl 256 (302)
T 3b9q_A 241 EFNEVVGITGLILTKL 256 (302)
T ss_dssp HHHHHTCCCEEEEECC
T ss_pred HHHHhcCCCEEEEeCC
Confidence 4543 47765555564
No 82
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.88 E-value=1.8e-10 Score=121.74 Aligned_cols=140 Identities=10% Similarity=0.052 Sum_probs=80.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH-----HHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN-----EHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~-----~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
.+|+.++|+||||||||||+++|+|.+++ .. ++|.+.+. ++. ..+..+. .+..+++++|+.....
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~-~~--G~V~l~g~--D~~r~~a~eql~~~~-----~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKN-EG--TKVLMAAG--DTFRAAASDQLEIWA-----ERTGCEIVVAEGDKAK 224 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHH-TT--CCEEEECC--CCSCHHHHHHHHHHH-----HHHTCEEECCSSSSCC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccc-cC--CEEEEecc--cccccchhHHHHHHH-----HhcCeEEEEecccccC
Confidence 46899999999999999999999999874 23 44555442 111 1111111 1235889998743256
Q ss_pred CCCcHHHHHHHHHhhhhHHH-H-hccHHHHHhHhhhhhccc--------CCCcc--EEEEeCCCC-CCHHHHHHHHHHHH
Q 007851 249 FDSKVMEWVAAEEKYKQEVQ-M-KNILPAVADKFLVDQHAD--------QRGAS--ILCFDEIQT-VDVFAIVALSGIVS 315 (587)
Q Consensus 249 ~~~tV~eni~~~~~~~~~~~-~-~~~L~~la~~l~~~LSgG--------q~~p~--LL~LDEPt~-lD~~~a~~L~~Ll~ 315 (587)
+..++.+|+.++........ . ...+....++++.+||.- ..+|+ +|++| |++ +|+... +.
T Consensus 225 p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~~------~~ 297 (359)
T 2og2_A 225 AATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ------AR 297 (359)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHH------HH
T ss_pred hhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHH------HH
Confidence 67899999987542110000 0 000001111222222200 15799 99999 998 987654 23
Q ss_pred HHHh-CCcEEEEecCC
Q 007851 316 RLLS-TGTVLVATSNR 330 (587)
Q Consensus 316 ~L~~-~G~vvV~TSn~ 330 (587)
.+.+ .|.++|+.||.
T Consensus 298 ~~~~~~g~t~iiiThl 313 (359)
T 2og2_A 298 EFNEVVGITGLILTKL 313 (359)
T ss_dssp HHHHHTCCCEEEEESC
T ss_pred HHHHhcCCeEEEEecC
Confidence 4443 47765555563
No 83
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.87 E-value=4.4e-11 Score=128.69 Aligned_cols=132 Identities=10% Similarity=0.037 Sum_probs=81.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
+..++|+||||||||||+++|+|..++ ..| .|.+++. ++ . ..++++|. ..++.+++.|
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p-~~G--sI~~~g~--~~-------t--------~~~~v~q~--~~~~~ltv~D 126 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNE-EEG--AAKTGVV--EV-------T--------MERHPYKH--PNIPNVVFWD 126 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTT-STT--SCCCCC---------------------CCCEEEEC--SSCTTEEEEE
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCc-cCc--eEEECCe--ec-------c--------eeEEeccc--cccCCeeehH
Confidence 348999999999999999999999875 233 3333321 11 0 12567775 2345566666
Q ss_pred HHHHHHhhhhHHH--HhccHHHHHhHhhhhhccc--C-----------C----------CccEEEEeCCCC-CCHHHHHH
Q 007851 256 WVAAEEKYKQEVQ--MKNILPAVADKFLVDQHAD--Q-----------R----------GASILCFDEIQT-VDVFAIVA 309 (587)
Q Consensus 256 ni~~~~~~~~~~~--~~~~L~~la~~l~~~LSgG--q-----------~----------~p~LL~LDEPt~-lD~~~a~~ 309 (587)
|+.++.......+ ....+... +.... +|+| + . +|++|++|||++ +|+.....
T Consensus 127 ~~g~~~~~~~~~~~L~~~~L~~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~ 204 (413)
T 1tq4_A 127 LPGIGSTNFPPDTYLEKMKFYEY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEK 204 (413)
T ss_dssp CCCGGGSSCCHHHHHHHTTGGGC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHH
T ss_pred hhcccchHHHHHHHHHHcCCCcc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHH
Confidence 6544321000000 00001111 11122 6776 3 3 899999999999 99999999
Q ss_pred HHHHHHHHH-----hCC----cEEEEecCCC
Q 007851 310 LSGIVSRLL-----STG----TVLVATSNRA 331 (587)
Q Consensus 310 L~~Ll~~L~-----~~G----~vvV~TSn~~ 331 (587)
+.+++..+. +.| .++++++|..
T Consensus 205 l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l 235 (413)
T 1tq4_A 205 VLQDIRLNCVNTFRENGIAEPPIFLLSNKNV 235 (413)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCEEECCTTCT
T ss_pred HHHHHHHHHHHHHHhcCCCCCcEEEEecCcC
Confidence 999998885 333 4677888864
No 84
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.85 E-value=1.6e-09 Score=112.38 Aligned_cols=101 Identities=12% Similarity=0.052 Sum_probs=65.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.++|.||||||||||+++|+|.+++ ..|. ..+++++|+. .+++. |+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~-~~G~---------------------------~~v~~v~qd~-~~~~~-t~ 137 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR-WDHH---------------------------PRVDLVTTDG-FLYPN-AE 137 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT-STTC---------------------------CCEEEEEGGG-GBCCH-HH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc-cCCC---------------------------CeEEEEecCc-cCCcc-cH
Confidence 46899999999999999999999999874 2221 2357777763 23334 88
Q ss_pred HHHHHHHHhh--hh---HHHHhccHHHHH----hHhhhhhcccC-----------CCccEEEEeCCCC-CCH
Q 007851 254 MEWVAAEEKY--KQ---EVQMKNILPAVA----DKFLVDQHADQ-----------RGASILCFDEIQT-VDV 304 (587)
Q Consensus 254 ~eni~~~~~~--~~---~~~~~~~L~~la----~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~ 304 (587)
.+|+.+.... .. .......+..+. +..+..||+|+ .+|+||++|||+. .|.
T Consensus 138 ~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 138 LQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp HHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCc
Confidence 8887542110 00 011112222222 12345899997 6899999999998 653
No 85
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.83 E-value=5.3e-09 Score=105.74 Aligned_cols=111 Identities=14% Similarity=0.143 Sum_probs=64.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+++.++|+||||||||||+++++|.+++ . ..++|.+.+. .+. .. .+...+++.|.....- ..+.
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~-~-~~G~I~~~g~--~i~----~~------~~~~~~~v~q~~~gl~-~~~l 87 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQ-T-KSYHIITIED--PIE----YV------FKHKKSIVNQREVGED-TKSF 87 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHH-H-CCCEEEEEES--SCC----SC------CCCSSSEEEEEEBTTT-BSCH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCC-C-CCCEEEEcCC--cce----ee------cCCcceeeeHHHhCCC-HHHH
Confidence 36889999999999999999999999864 2 1345555441 110 00 0111233443210000 0000
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
-..++..+. .+|++|++|||+ |...... +++. ...|.+|++|+|..
T Consensus 88 -------------------~~~la~aL~-------~~p~illlDEp~--D~~~~~~---~l~~-~~~g~~vl~t~H~~ 133 (261)
T 2eyu_A 88 -------------------ADALRAALR-------EDPDVIFVGEMR--DLETVET---ALRA-AETGHLVFGTLHTN 133 (261)
T ss_dssp -------------------HHHHHHHHH-------HCCSEEEESCCC--SHHHHHH---HHHH-HHTTCEEEEEECCS
T ss_pred -------------------HHHHHHHHh-------hCCCEEEeCCCC--CHHHHHH---HHHH-HccCCEEEEEeCcc
Confidence 112344443 479999999999 8776543 3443 35688888887764
No 86
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.82 E-value=5.2e-09 Score=109.33 Aligned_cols=106 Identities=13% Similarity=0.100 Sum_probs=64.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
+++.++|+||||||||||+++++|.+++ . .+.|.+.+.. ++ . .......++++++ ...+.
T Consensus 170 ~g~~v~i~G~~GsGKTTll~~l~g~~~~-~--~g~i~i~~~~-e~-------~--~~~~~~~i~~~~g------gg~~~- 229 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYIKSIMEFIPK-E--ERIISIEDTE-EI-------V--FKHHKNYTQLFFG------GNITS- 229 (330)
T ss_dssp HTCCEEEEESTTSCHHHHHHHGGGGSCT-T--SCEEEEESSC-CC-------C--CSSCSSEEEEECB------TTBCH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcC-C--CcEEEECCee-cc-------c--cccchhEEEEEeC------CChhH-
Confidence 5789999999999999999999999985 2 3456555420 00 0 0001233455532 01111
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
-..++..+. .+|++|++|||+.. .+.++|+.+...+.++|+|+|..
T Consensus 230 ------------------r~~la~aL~-------~~p~ilildE~~~~------e~~~~l~~~~~g~~tvi~t~H~~ 275 (330)
T 2pt7_A 230 ------------------ADCLKSCLR-------MRPDRIILGELRSS------EAYDFYNVLCSGHKGTLTTLHAG 275 (330)
T ss_dssp ------------------HHHHHHHTT-------SCCSEEEECCCCST------HHHHHHHHHHTTCCCEEEEEECS
T ss_pred ------------------HHHHHHHhh-------hCCCEEEEcCCChH------HHHHHHHHHhcCCCEEEEEEccc
Confidence 122344443 68999999999972 24566777765444556666653
No 87
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.81 E-value=3e-10 Score=112.00 Aligned_cols=121 Identities=9% Similarity=-0.003 Sum_probs=70.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC-cccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG-IVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~-~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
++|+.++|+||||||||||+++++|..++ ...+ .|.+.+. . . .......++|+||.. ..+..++
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g--~v~~ttr--~--------~--~~~e~~gi~y~fq~~-~~f~~~~ 78 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV--SVSHTTR--Q--------P--RPGEVHGEHYFFVNH-DEFKEMI 78 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE--CCCEECS--C--------C--CTTCCBTTTBEECCH-HHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE--EEEecCC--C--------C--CcccccCceEEECCH-HHHHHHH
Confidence 46899999999999999999999999874 2222 3332220 0 0 011234578888862 1122222
Q ss_pred H----HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEec
Q 007851 253 V----MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATS 328 (587)
Q Consensus 253 V----~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TS 328 (587)
+ .||+.+....++. ....+ .... ..+++++|| +|+..+..+.+++. .|++|++++
T Consensus 79 ~~~~f~E~~~~~~~~yg~-----~~~~v-~~~l-------~~G~illLD----LD~~~~~~i~~~l~----~~~tI~i~t 137 (219)
T 1s96_A 79 SRDAFLEHAEVFGNYYGT-----SREAI-EQVL-------ATGVDVFLD----IDWQGAQQIRQKMP----HARSIFILP 137 (219)
T ss_dssp HTTCEEEEEEETTEEEEE-----EHHHH-HHHH-------TTTCEEEEE----CCHHHHHHHHHHCT----TCEEEEEEC
T ss_pred hcCHHHHHHHHHhccCCC-----CHHHH-HHHH-------hcCCeEEEE----ECHHHHHHHHHHcc----CCEEEEEEC
Confidence 2 2222111111110 01111 1122 356999999 99999998888775 578888777
Q ss_pred CC
Q 007851 329 NR 330 (587)
Q Consensus 329 n~ 330 (587)
|.
T Consensus 138 h~ 139 (219)
T 1s96_A 138 PS 139 (219)
T ss_dssp SS
T ss_pred CC
Confidence 75
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=98.80 E-value=1.8e-08 Score=105.26 Aligned_cols=51 Identities=22% Similarity=0.141 Sum_probs=43.6
Q ss_pred hhhhhcccC-----------------CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 280 FLVDQHADQ-----------------RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 280 l~~~LSgGq-----------------~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+.+||||+ .+|++|+||||++ +|+..+..+.++|..+.+.|.+||++||.
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~ 313 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHD 313 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESC
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECh
Confidence 356799997 3799999999999 99999999999999987777777777775
No 89
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.77 E-value=5.7e-09 Score=120.84 Aligned_cols=123 Identities=14% Similarity=0.049 Sum_probs=67.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
..|+.++|+||||+||||||++++|.......|. .+ . .....++++.+ ++..+++
T Consensus 605 ~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~-~v----------------p----a~~~~i~~~~~----i~~~~~~ 659 (800)
T 1wb9_A 605 PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS-YV----------------P----AQKVEIGPIDR----IFTRVGA 659 (800)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC-CB----------------S----SSEEEECCCCE----EEEEEC-
T ss_pred CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc-cc----------------c----hhcccceeHHH----HHhhCCH
Confidence 3678999999999999999999998642100000 00 0 00112333322 2344566
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHhC-CcEEEEecCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQT-VDVFAIVAL-SGIVSRLLST-GTVLVATSNR 330 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~~-G~vvV~TSn~ 330 (587)
.+|+..+...... +. ..+..+++. ..+|+||+||||+. +|+.+...+ ..+++.+.+. |.++|++||.
T Consensus 660 ~d~l~~~~stf~~-e~-~~~~~il~~--------a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~ 729 (800)
T 1wb9_A 660 ADDLASGRSTFMV-EM-TETANILHN--------ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHY 729 (800)
T ss_dssp ----------CHH-HH-HHHHHHHHH--------CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred HHHHHhhhhhhhH-HH-HHHHHHHHh--------ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCC
Confidence 7776554321110 01 011222222 16899999999987 887766554 7889998874 8877777776
Q ss_pred C
Q 007851 331 A 331 (587)
Q Consensus 331 ~ 331 (587)
.
T Consensus 730 ~ 730 (800)
T 1wb9_A 730 F 730 (800)
T ss_dssp G
T ss_pred H
Confidence 4
No 90
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.76 E-value=7.5e-09 Score=121.20 Aligned_cols=43 Identities=9% Similarity=0.226 Sum_probs=35.9
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHH-HHHHHHHh-CCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALS-GIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~-~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.+|+||+||||+. +|+.+...+. .+++.+.+ .|.++|++||..
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~ 796 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP 796 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH
Confidence 6899999999999 9999888886 88888865 588777777764
No 91
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.75 E-value=7.4e-09 Score=121.52 Aligned_cols=43 Identities=14% Similarity=0.210 Sum_probs=35.3
Q ss_pred CCccEEEEeCCCC-CCHHHHHHH-HHHHHHHHh-CCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVAL-SGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L-~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.+|+||+||||+. +|+.+...+ ..+++.+.+ .|.++|++||..
T Consensus 740 ~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~ 785 (934)
T 3thx_A 740 TKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH 785 (934)
T ss_dssp CTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH
Confidence 5899999999999 999988777 788888876 487777777764
No 92
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.74 E-value=1.6e-08 Score=97.70 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=33.7
Q ss_pred CCcc--EEEEeCCCC-C--CHHHHHHHHHHHHHHHh-CCcEEEEecCCC
Q 007851 289 RGAS--ILCFDEIQT-V--DVFAIVALSGIVSRLLS-TGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~--LL~LDEPt~-l--D~~~a~~L~~Ll~~L~~-~G~vvV~TSn~~ 331 (587)
.+|+ +|++|||+. + |+.....+.+.|..+.+ .|++||+++|..
T Consensus 120 ~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 120 LGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp HCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred hCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 3789 999999997 4 88777888888888864 588888888865
No 93
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=3.7e-08 Score=102.14 Aligned_cols=62 Identities=13% Similarity=0.190 Sum_probs=45.6
Q ss_pred CCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 288 QRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 288 q~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
..+|+||++|||+.+|...+..|.++++... .++++|+++|.+.. .+..|..+|.++.+...
T Consensus 132 ~~~~~vlilDE~~~L~~~~~~~L~~~le~~~-~~~~~Il~t~~~~~--------------l~~~l~sR~~~~~~~~~ 193 (354)
T 1sxj_E 132 AHRYKCVIINEANSLTKDAQAALRRTMEKYS-KNIRLIMVCDSMSP--------------IIAPIKSQCLLIRCPAP 193 (354)
T ss_dssp --CCEEEEEECTTSSCHHHHHHHHHHHHHST-TTEEEEEEESCSCS--------------SCHHHHTTSEEEECCCC
T ss_pred CCCCeEEEEeCccccCHHHHHHHHHHHHhhc-CCCEEEEEeCCHHH--------------HHHHHHhhceEEecCCc
Confidence 4589999999999999999988888888753 45677777776432 13346678888887654
No 94
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.73 E-value=6.2e-09 Score=117.25 Aligned_cols=138 Identities=9% Similarity=0.047 Sum_probs=76.4
Q ss_pred EEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHHHH
Q 007851 179 LYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEWVA 258 (587)
Q Consensus 179 lyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~eni~ 258 (587)
++|+||||||||||+++|+|...|. +.|.|.+.+. ++. +.. .......+..+++++|+ ..+++.++|.+|+.
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P~--~sG~vt~~g~--~i~--~~~-~~~~~~~~~~i~~v~Q~-~~l~~~~tv~e~i~ 119 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALPR--GSGIVTRCPL--VLK--LKK-LVNEDKWRGKVSYQDYE-IEISDASEVEKEIN 119 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCE--EEE--EEE-CSSSSCCEEEESCC----CCCCCHHHHHTTHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCCC--CCCeEEEcCE--EEE--Eec-CCccccceeEEeeeccc-ccCCCHHHHHHHHH
Confidence 9999999999999999999997542 2344444331 100 000 00001223568889886 34566788999987
Q ss_pred HHHhhhhHHHHhccHHHHHhHhh-hhhcccCCCccEEEEeCC------CC-CCHHHHHHHHHHHHHHHhC--CcEEEEec
Q 007851 259 AEEKYKQEVQMKNILPAVADKFL-VDQHADQRGASILCFDEI------QT-VDVFAIVALSGIVSRLLST--GTVLVATS 328 (587)
Q Consensus 259 ~~~~~~~~~~~~~~L~~la~~l~-~~LSgGq~~p~LL~LDEP------t~-lD~~~a~~L~~Ll~~L~~~--G~vvV~TS 328 (587)
+.....+... .. +..... ..+ .+...|+++++||| +. +|+.....+.+++..+..+ ++++++++
T Consensus 120 ~~~~~~~~~~--~~---~s~~~i~l~i-~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt 193 (608)
T 3szr_A 120 KAQNAIAGEG--MG---ISHELITLEI-SSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVP 193 (608)
T ss_dssp HHHHHHHCSS--SC---CCSCCEEEEE-EESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEE
T ss_pred HHHHHhcCCc--cc---cchHHHHHHh-cCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEe
Confidence 6533211000 00 000000 000 01257999999999 76 9999999999999997554 45555555
Q ss_pred CC
Q 007851 329 NR 330 (587)
Q Consensus 329 n~ 330 (587)
|.
T Consensus 194 ~~ 195 (608)
T 3szr_A 194 SN 195 (608)
T ss_dssp SS
T ss_pred cc
Confidence 43
No 95
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.71 E-value=3.3e-08 Score=101.85 Aligned_cols=46 Identities=20% Similarity=0.308 Sum_probs=37.4
Q ss_pred CccEEEEeCCCCCC--HHHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 290 GASILCFDEIQTVD--VFAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 290 ~p~LL~LDEPt~lD--~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
++.+|++||++.+. ......+..++..+.+.|..+|+|++.+|.++
T Consensus 98 ~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l 145 (324)
T 1l8q_A 98 SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKL 145 (324)
T ss_dssp TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGC
T ss_pred CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHH
Confidence 58999999999843 36777888999988888888888888777764
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=98.71 E-value=3.6e-09 Score=116.96 Aligned_cols=120 Identities=12% Similarity=0.091 Sum_probs=72.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccce--EEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHR--QRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k--~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.+|+.++|.|+||||||||+++|++..++ .+. ..+.|.+-...+.... . .. .+
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~--~G~~vi~~~~ee~~~~l~~~~---~--------~~------------g~ 333 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACA--NKERAILFAYEESRAQLLRNA---Y--------SW------------GM 333 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHT--TTCCEEEEESSSCHHHHHHHH---H--------TT------------SC
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEEEeCCHHHHHHHH---H--------Hc------------CC
Confidence 57899999999999999999999998764 233 2233332111111111 0 00 01
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccC-----------CCccEEEEeCCCC-CCHH-----HHHHHHHHH
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQ-----------RGASILCFDEIQT-VDVF-----AIVALSGIV 314 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq-----------~~p~LL~LDEPt~-lD~~-----~a~~L~~Ll 314 (587)
.+.+....+ +..+.+..+.+||+|+ .+|++|++| |+. +|.. .+..+.+++
T Consensus 334 ~~~~~~~~g------------~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll 400 (525)
T 1tf7_A 334 DFEEMERQN------------LLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVT 400 (525)
T ss_dssp CHHHHHHTT------------SEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHH
T ss_pred CHHHHHhCC------------CEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHH
Confidence 111110000 0001111223344442 689999999 998 8988 888999999
Q ss_pred HHHHhCCcEEEEecCCC
Q 007851 315 SRLLSTGTVLVATSNRA 331 (587)
Q Consensus 315 ~~L~~~G~vvV~TSn~~ 331 (587)
..+.+.|+++|+++|..
T Consensus 401 ~~l~~~g~tvilvsh~~ 417 (525)
T 1tf7_A 401 GYAKQEEITGLFTNTSD 417 (525)
T ss_dssp HHHHHTTCEEEEEEECS
T ss_pred HHHHhCCCEEEEEECcc
Confidence 99988898777777764
No 97
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.6e-08 Score=108.13 Aligned_cols=142 Identities=23% Similarity=0.270 Sum_probs=80.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
.++|+|+.||||+|||||+|.+++++.+..+ -..+....++.. . .++
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~---f~~v~~s~l~sk-------~---vGe-------------------- 225 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCK---FIRVSGAELVQK-------Y---IGE-------------------- 225 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCE---EEEEEGGGGSCS-------S---TTH--------------------
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCC---ceEEEhHHhhcc-------c---cch--------------------
Confidence 3578999999999999999999999987531 122221111000 0 000
Q ss_pred HHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCC-----------CHHHHHHHHHHHHHHHh--
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTV-----------DVFAIVALSGIVSRLLS-- 319 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~l-----------D~~~a~~L~~Ll~~L~~-- 319 (587)
...+ . ..+...|+. ..|.||+|||..++ |......+..+|..+-.
T Consensus 226 se~~------------v-r~lF~~Ar~---------~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 283 (405)
T 4b4t_J 226 GSRM------------V-RELFVMARE---------HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE 283 (405)
T ss_dssp HHHH------------H-HHHHHHHHH---------TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT
T ss_pred HHHH------------H-HHHHHHHHH---------hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC
Confidence 0000 0 012233444 36999999999752 22334456677766632
Q ss_pred --CCcEEEEecCCCcccccc-----CCchhHHhHH------HHHhhccceeEEecCCchhhhhh
Q 007851 320 --TGTVLVATSNRAPWDLNQ-----DGMQREIFQK------LVAKLEKHCEIIPIGSEVDYRRL 370 (587)
Q Consensus 320 --~G~vvV~TSn~~PedLy~-----~gl~r~~F~p------~I~~L~~~~~Vv~l~~~~DyR~~ 370 (587)
.+++||+|||++ +.|.+ +++.+..++| ...+++.++.-+.++.+.|+...
T Consensus 284 ~~~~V~vIaATNrp-d~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~l 346 (405)
T 4b4t_J 284 TSKNIKIIMATNRL-DILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKV 346 (405)
T ss_dssp CCCCEEEEEEESCS-SSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHH
T ss_pred CCCCeEEEeccCCh-hhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHH
Confidence 356889999984 44443 4555444333 23455555555566666666654
No 98
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.69 E-value=2.3e-08 Score=118.52 Aligned_cols=43 Identities=16% Similarity=0.195 Sum_probs=36.0
Q ss_pred CCccEEEEeCCCC-CCHHHH-HHHHHHHHHHHhC-CcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAI-VALSGIVSRLLST-GTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a-~~L~~Ll~~L~~~-G~vvV~TSn~~ 331 (587)
.+|.||+||||+. +|+.+. .++..+++.+.+. |.++|++||..
T Consensus 867 ~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~ 912 (1022)
T 2o8b_B 867 TAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH 912 (1022)
T ss_dssp CTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH
T ss_pred CCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 6899999999998 999884 5678999999876 88777777764
No 99
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.69 E-value=7e-09 Score=119.53 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=63.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHH
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVME 255 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~e 255 (587)
|+.++|+||||+||||||++++|.......|. +. . .....+++++| .+..+++.+
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~--~v---------------p----a~~~~i~~v~~----i~~~~~~~d 630 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVGS--FV---------------P----AEEAHLPLFDG----IYTRIGASD 630 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC--CB---------------S----SSEEEECCCSE----EEEECCC--
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccCc--ee---------------e----hhccceeeHHH----hhccCCHHH
Confidence 78999999999999999999999753111121 10 0 01123455544 344567888
Q ss_pred HHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCC---CC-CCHHHH-HHHHHHHHHHHhCCcEEEEecCC
Q 007851 256 WVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEI---QT-VDVFAI-VALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 256 ni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEP---t~-lD~~~a-~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
|+..+..... .+ +..++..+. . ..+|++|+|||| |+ +|.... ..+.+.+.. .|.++|++||.
T Consensus 631 ~l~~g~S~~~-~e----~~~la~il~-~----a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~---~g~~vl~~TH~ 697 (765)
T 1ewq_A 631 DLAGGKSTFM-VE----MEEVALILK-E----ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE---RRAYTLFATHY 697 (765)
T ss_dssp ----CCSHHH-HH----HHHHHHHHH-H----CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH---HTCEEEEECCC
T ss_pred HHHhcccHHH-HH----HHHHHHHHH-h----ccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh---CCCEEEEEeCC
Confidence 8766432110 00 111222110 0 168999999999 66 787653 345555443 57766667775
Q ss_pred C
Q 007851 331 A 331 (587)
Q Consensus 331 ~ 331 (587)
.
T Consensus 698 ~ 698 (765)
T 1ewq_A 698 F 698 (765)
T ss_dssp H
T ss_pred H
Confidence 3
No 100
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.68 E-value=2.5e-08 Score=101.54 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+|+.++|.||||+|||||++.|++.+.+
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999999998864
No 101
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.67 E-value=1.8e-08 Score=109.26 Aligned_cols=151 Identities=11% Similarity=0.115 Sum_probs=90.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh-HHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f-m~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
...|+.++|+||||||||||+++|+|..++ ..+.|.+.+. ..++........ ......+.+++++|.....++.+
T Consensus 154 i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~---~~G~i~~~G~r~~ev~~~~~~~~-~~~~l~r~i~~v~q~~~~~~~~~ 229 (438)
T 2dpy_A 154 VGRGQRMGLFAGSGVGKSVLLGMMARYTRA---DVIVVGLIGERGREVKDFIENIL-GPDGRARSVVIAAPADVSPLLRM 229 (438)
T ss_dssp CBTTCEEEEEECTTSSHHHHHHHHHHHSCC---SEEEEEEESCCHHHHHHHHHTTT-HHHHHHTEEEEEECTTSCHHHHH
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhcccCC---CeEEEEEeceecHHHHHHHHhhc-cccccCceEEEEECCCCCHHHHH
Confidence 357899999999999999999999999875 3456666652 113322111100 01112356899999645556678
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCC--CC-CCHHHHHHHHHHHHHHHh---C-Cc--
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEI--QT-VDVFAIVALSGIVSRLLS---T-GT-- 322 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEP--t~-lD~~~a~~L~~Ll~~L~~---~-G~-- 322 (587)
++.+|+.+...+..... ...+ .+.+. +..||+|+++-.+. +.|| +. +|+.....+.++++++.+ . |.
T Consensus 230 ~v~~~~~~~ae~~~~~~-~~v~-~~ld~-l~~lS~g~qrvslA-l~~p~~t~glD~~~~~~l~~ll~r~~~~~~~~GsiT 305 (438)
T 2dpy_A 230 QGAAYATRIAEDFRDRG-QHVL-LIMDS-LTRYAMAQREIALA-IGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSIT 305 (438)
T ss_dssp HHHHHHHHHHHHHHTTT-CEEE-EEEEC-HHHHHHHHHHHHHH-TTCCCCSSSCCTTHHHHHHHHHTTCSCCSTTSCEEE
T ss_pred HHHHHHHHHHHHHHhCC-CCHH-HHHHh-HHHHHHHHHHHHHH-hCCCcccccCCHHHHHHHHHHHHHHHhccCCCCccc
Confidence 99999887654332110 0000 00011 23445554222222 3333 44 999999999999999876 3 63
Q ss_pred ---EEEEecCCC
Q 007851 323 ---VLVATSNRA 331 (587)
Q Consensus 323 ---vvV~TSn~~ 331 (587)
+|++++|+.
T Consensus 306 ~~~tVlv~tHdl 317 (438)
T 2dpy_A 306 AFYTVLTEGDDQ 317 (438)
T ss_dssp EEEEEECSSSCS
T ss_pred ceeEEEEeCCCc
Confidence 677777764
No 102
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.67 E-value=3.2e-08 Score=95.34 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
|+.++|+||||||||||+++++|.++
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc
Confidence 46789999999999999999999886
No 103
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.67 E-value=3.7e-08 Score=106.55 Aligned_cols=29 Identities=38% Similarity=0.643 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|+|++||||+|||||+|.+++++.+.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~ 240 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG 240 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 35789999999999999999999998775
No 104
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.67 E-value=6.6e-08 Score=104.68 Aligned_cols=46 Identities=26% Similarity=0.339 Sum_probs=38.4
Q ss_pred CccEEEEeCCCCC--CHHHHHHHHHHHHHHHhCCcEEEEecCCCcccc
Q 007851 290 GASILCFDEIQTV--DVFAIVALSGIVSRLLSTGTVLVATSNRAPWDL 335 (587)
Q Consensus 290 ~p~LL~LDEPt~l--D~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedL 335 (587)
+++||++||++.+ +......+..+|..+.+.|..||+|+|.+|.++
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 6899999999973 336677889999999888888888999888775
No 105
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.66 E-value=5e-08 Score=102.98 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVM 254 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~ 254 (587)
++..++|.|||||||||||+++.|.+++. . ++.+...+-..+ .. .....+++.|.... ....+..
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~-~-~~~i~t~ed~~e-------~~-----~~~~~~~v~q~~~~-~~~~~~~ 186 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNT-K-YHHILTIEDPIE-------FV-----HESKKCLVNQREVH-RDTLGFS 186 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHH-C-CCEEEEEESSCC-------SC-----CCCSSSEEEEEEBT-TTBSCHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCC-C-CcEEEEccCcHH-------hh-----hhccccceeeeeec-cccCCHH
Confidence 45689999999999999999999998742 2 233322110000 00 01122334432110 0111111
Q ss_pred HHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 255 EWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 255 eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
..++..+. .+|++|++|||+ |.... +++..+...|.++++|+|..
T Consensus 187 -------------------~~La~aL~-------~~PdvillDEp~--d~e~~----~~~~~~~~~G~~vl~t~H~~ 231 (356)
T 3jvv_A 187 -------------------EALRSALR-------EDPDIILVGEMR--DLETI----RLALTAAETGHLVFGTLHTT 231 (356)
T ss_dssp -------------------HHHHHHTT-------SCCSEEEESCCC--SHHHH----HHHHHHHHTTCEEEEEESCS
T ss_pred -------------------HHHHHHhh-------hCcCEEecCCCC--CHHHH----HHHHHHHhcCCEEEEEEccC
Confidence 13444443 689999999998 54443 33344466788888888875
No 106
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=98.66 E-value=2.9e-08 Score=100.34 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCccEEEEeCCCC---CCHHH---HHHHHHHHHHHH-hCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT---VDVFA---IVALSGIVSRLL-STGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~---lD~~~---a~~L~~Ll~~L~-~~G~vvV~TSn~~ 331 (587)
.+|++|++|||+. +|... ...+.+.|..+. +.|++||++||..
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 4799999999997 66533 366677777775 4588888877764
No 107
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.63 E-value=2.2e-08 Score=108.32 Aligned_cols=29 Identities=41% Similarity=0.642 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|+|++||||+|||||+|.+++++.+.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~ 240 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTN 240 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999999775
No 108
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.63 E-value=1e-08 Score=106.07 Aligned_cols=76 Identities=13% Similarity=0.081 Sum_probs=50.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHH-----HHHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKIN-----EHMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~-----~~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
.|+.++|+||||||||||+++++|.+++ .. ++|.+.+. ++. ..+..+. .+..+++++|.. ...+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~-~~--g~V~l~g~--D~~r~~a~~ql~~~~-----~~~~i~~v~q~~-~~~p 169 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN-LG--KKVMFCAG--DTFRAAGGTQLSEWG-----KRLSIPVIQGPE-GTDS 169 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT-TT--CCEEEECC--CCSSTTTTHHHHHHH-----HHHTCCEECCCT-TCCH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh-cC--CEEEEEee--cCCChhHHHHHHHHH-----HhcCceEEEeCC-CCCH
Confidence 5789999999999999999999999975 23 44555442 111 1111111 123578899863 4456
Q ss_pred CCcHHHHHHHHH
Q 007851 250 DSKVMEWVAAEE 261 (587)
Q Consensus 250 ~~tV~eni~~~~ 261 (587)
..++.+|+.++.
T Consensus 170 ~~~v~~~v~~~~ 181 (304)
T 1rj9_A 170 AALAYDAVQAMK 181 (304)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 678999987653
No 109
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.63 E-value=1.3e-08 Score=104.84 Aligned_cols=134 Identities=10% Similarity=0.102 Sum_probs=68.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc-cCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcHHHH
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA-TEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKVMEW 256 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~-l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV~en 256 (587)
.++|+|+||+|||||+++|+|. ..+ .. + +.+.+ ..+.... ....+++++|. ......+++.|+
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g~~~~~-~~--g-i~~~g--~~~~~t~---------~~~~~~~~~q~-~~~~~~ltv~Dt 83 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFLTDLYP-ER--V-ISGAA--EKIERTV---------QIEASTVEIEE-RGVKLRLTVVDT 83 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC---------------------------------------CEEEEC----CCEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccC-CC--C-cccCC--cccCCcc---------eEeeEEEEecC-CCcccCcchhhh
Confidence 4699999999999999999986 543 22 2 33222 1111100 01235666664 233445666666
Q ss_pred HHHHHhhhhHHH---HhccHHHHHhHhhhhhcccC----CCcc---EEEEeCCCC--CCHHHHHHHHHHHHHHHhC-CcE
Q 007851 257 VAAEEKYKQEVQ---MKNILPAVADKFLVDQHADQ----RGAS---ILCFDEIQT--VDVFAIVALSGIVSRLLST-GTV 323 (587)
Q Consensus 257 i~~~~~~~~~~~---~~~~L~~la~~l~~~LSgGq----~~p~---LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~-G~v 323 (587)
+.++........ ....+....+.++.++|+|+ ..++ +|++|||+. +|+.+. ++++.+... +++
T Consensus 84 ~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~----~~l~~l~~~~~ii 159 (301)
T 2qnr_A 84 PGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDV----AFMKAIHNKVNIV 159 (301)
T ss_dssp C-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHH----HHHHHHTTTSCEE
T ss_pred hhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHH----HHHHHHHhcCCEE
Confidence 554322110000 11113344567888999997 3333 899999974 999873 556666544 677
Q ss_pred EEEecCCC
Q 007851 324 LVATSNRA 331 (587)
Q Consensus 324 vV~TSn~~ 331 (587)
+|++.|..
T Consensus 160 lV~~K~Dl 167 (301)
T 2qnr_A 160 PVIAKADT 167 (301)
T ss_dssp EEECCGGG
T ss_pred EEEEeCCC
Confidence 88877754
No 110
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.62 E-value=4.9e-08 Score=96.91 Aligned_cols=120 Identities=11% Similarity=0.008 Sum_probs=73.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|..++|.||||||||||+++|+|.+.. + .+ + . ..+.+++++|+ .++..+++
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~-~----~~--~-----------~-------~~~~i~~v~~d--~~~~~l~~ 75 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQ-N----EV--E-----------Q-------RQRKVVILSQD--RFYKVLTA 75 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTG-G----GS--C-----------G-------GGCSEEEEEGG--GGBCCCCH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhch-h----cc--c-----------c-------cCCceEEEeCC--cCccccCH
Confidence 46789999999999999999999997631 1 00 1 0 12457888887 35566889
Q ss_pred HHHHHHHHhhhh----H----HHHhccHHHH---HhHhhhhhcccC----------CCccEEEEeCCCC-CCHHHHHHHH
Q 007851 254 MEWVAAEEKYKQ----E----VQMKNILPAV---ADKFLVDQHADQ----------RGASILCFDEIQT-VDVFAIVALS 311 (587)
Q Consensus 254 ~eni~~~~~~~~----~----~~~~~~L~~l---a~~l~~~LSgGq----------~~p~LL~LDEPt~-lD~~~a~~L~ 311 (587)
.+++.+...... . ......+..+ ....+..||+|+ .+|++|++|||.. .+.. +
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~----l- 150 (245)
T 2jeo_A 76 EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQE----I- 150 (245)
T ss_dssp HHHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHH----H-
T ss_pred hHhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHH----H-
Confidence 888865432111 0 0011112212 122234688886 3689999999987 4642 1
Q ss_pred HHHHHHHhCCcEEEEecCC
Q 007851 312 GIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 312 ~Ll~~L~~~G~vvV~TSn~ 330 (587)
..+ .+.+|++++|.
T Consensus 151 ---~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 151 ---RDM--FHLRLFVDTDS 164 (245)
T ss_dssp ---HTT--CSEEEEEECCH
T ss_pred ---HHh--cCeEEEEECCH
Confidence 122 36777777774
No 111
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.59 E-value=4e-08 Score=105.74 Aligned_cols=29 Identities=41% Similarity=0.678 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|+|+.||||+|||||+|.+++++.+.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~ 241 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTS 241 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence 35789999999999999999999998775
No 112
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.55 E-value=4.1e-07 Score=88.68 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
++|+.+.|+||||||||||+..|++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 46899999999999999999999984
No 113
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=98.54 E-value=1e-07 Score=101.05 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=66.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+++.++|+||||||||||++++.+.+++ .++++|...+- .+ .. .....+++++|.....-+ .+
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~~--~~~g~I~~~e~--~~-----e~-----~~~~~~~~v~Q~~~g~~~-~~- 197 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYINQ--TKSYHIITIED--PI-----EY-----VFKHKKSIVNQREVGEDT-KS- 197 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHHH--HSCCEEEEEES--SC-----CS-----CCCCSSSEEEEEEBTTTB-SC-
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcCc--CCCcEEEEecc--cH-----hh-----hhccCceEEEeeecCCCH-HH-
Confidence 46788999999999999999999999874 22355543331 11 00 112356777773111000 00
Q ss_pred HHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 254 MEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 254 ~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.-..++..+. .+|++|++|||+ |.... ..+++. ...|..+++|+|..
T Consensus 198 ------------------~~~~l~~~L~-------~~pd~illdE~~--d~e~~---~~~l~~-~~~g~~vi~t~H~~ 244 (372)
T 2ewv_A 198 ------------------FADALRAALR-------EDPDVIFVGEMR--DLETV---ETALRA-AETGHLVFGTLHTN 244 (372)
T ss_dssp ------------------SHHHHHHHTT-------SCCSEEEESCCC--SHHHH---HHHHHH-HTTTCEEEECCCCC
T ss_pred ------------------HHHHHHHHhh-------hCcCEEEECCCC--CHHHH---HHHHHH-HhcCCEEEEEECcc
Confidence 0012333332 579999999998 65543 334444 35688888888863
No 114
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.54 E-value=4.1e-09 Score=101.53 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|+.++|.||||||||||+++|+|.+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999999875
No 115
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.52 E-value=8.1e-08 Score=104.22 Aligned_cols=28 Identities=39% Similarity=0.695 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+|++||||+|||||+|.+++++.+.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~ 268 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD 268 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence 5789999999999999999999998775
No 116
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.50 E-value=1.1e-07 Score=102.61 Aligned_cols=29 Identities=41% Similarity=0.743 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|+|++||||+|||||+|.+++++.+.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~ 231 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK 231 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999998775
No 117
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.50 E-value=3.1e-07 Score=88.24 Aligned_cols=25 Identities=28% Similarity=0.085 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHh
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g 198 (587)
++|+.+.|+||||+|||||+..+++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999999998
No 118
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.49 E-value=7.2e-08 Score=93.31 Aligned_cols=46 Identities=15% Similarity=0.336 Sum_probs=35.0
Q ss_pred CccEEEEeCCCCCCH--HHHHHHHHHHHHHHhCCcE-EEEecCCCcccc
Q 007851 290 GASILCFDEIQTVDV--FAIVALSGIVSRLLSTGTV-LVATSNRAPWDL 335 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~--~~a~~L~~Ll~~L~~~G~v-vV~TSn~~PedL 335 (587)
++.+|++||+..++. .....|..++..+...+.+ +|+|+|..+..+
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 578999999988543 3377788899888877764 888888776543
No 119
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.42 E-value=1.8e-07 Score=100.24 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=28.3
Q ss_pred hhhccccCCCCCCCCCCcEEEEEcCCCChHHHHHHHHH--hccC
Q 007851 160 RKLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFY--GATE 201 (587)
Q Consensus 160 ~~~~~~~~~~~~~~~~pkglyL~GpnGsGKTTLm~l~~--g~l~ 201 (587)
..||.+++. ..++++.+.|+||+|||||||+..|+ +..+
T Consensus 165 ~~LD~lLgG---GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 165 KNLDTLLGG---GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp HHHHHHTTT---SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred hhHHHHhcC---CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 345665532 23578999999999999999999654 4444
No 120
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.41 E-value=5.3e-08 Score=96.54 Aligned_cols=130 Identities=11% Similarity=0.030 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH---hccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFY---GATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDS 251 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~---g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 251 (587)
.|+.++|+||||||||||+++|+ |...+. . +.+.+.+. . ... .....++.++|. ...++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~-~--G~i~~~~~--~-------~~~---~~~~~i~~~~~~-~~~~~~~ 89 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS-S--GHFLRENI--K-------AST---EVGEMAKQYIEK-SLLVPDH 89 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE-H--HHHHHHHH--H-------TTC---HHHHHHHHHHHT-TCCCCHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec-H--HHHHHHHH--h-------cCC---hHHHHHHHHHHc-CCCCCHH
Confidence 36899999999999999999999 776531 1 11211110 0 000 000111222332 2345556
Q ss_pred cHHHHHHHHHh--------hhh----HH---HHh--c--------------cHHHHHhHhhhhhccc-----CCCccEEE
Q 007851 252 KVMEWVAAEEK--------YKQ----EV---QMK--N--------------ILPAVADKFLVDQHAD-----QRGASILC 295 (587)
Q Consensus 252 tV~eni~~~~~--------~~~----~~---~~~--~--------------~L~~la~~l~~~LSgG-----q~~p~LL~ 295 (587)
++.+++..... ..+ .. ... . .+..+.++.+..|||- ..+|++++
T Consensus 90 ~v~~~l~~~l~~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~ll 169 (246)
T 2bbw_A 90 VITRLMMSELENRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHG 169 (246)
T ss_dssp HHHHHHHHHHHTCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTT
T ss_pred HHHHHHHHHHHhcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCcccc
Confidence 77777765321 000 00 000 0 0334445555567763 57899999
Q ss_pred Ee----CCCC-CCHHHHHHHHHHHHHHHhC
Q 007851 296 FD----EIQT-VDVFAIVALSGIVSRLLST 320 (587)
Q Consensus 296 LD----EPt~-lD~~~a~~L~~Ll~~L~~~ 320 (587)
+| ||++ +|......+.+.+..+.+.
T Consensus 170 lD~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 170 IDDVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp BCTTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccccCCCCcHHHHHHHHHHHHHh
Confidence 99 9998 9988888888888776543
No 121
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.41 E-value=3.9e-07 Score=96.16 Aligned_cols=112 Identities=10% Similarity=0.042 Sum_probs=66.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeee-ccCCC-CCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSIS-GWITN-LPFDS 251 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~-q~~~~-~~~~~ 251 (587)
.+|+.++|.||||||||||++++.|.+++ ..+.|.+.+. .+ +. .......+++++ |.... .++..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll~~l~~~~~~---~~g~I~ie~~-~e-------~~--~~~~~~~v~~v~~q~~~~~~~~~~ 239 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLMKALMQEIPF---DQRLITIEDV-PE-------LF--LPDHPNHVHLFYPSEAKEEENAPV 239 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHHHHHHTTSCT---TSCEEEEESS-SC-------CC--CTTCSSEEEEECC----------C
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHhcCCC---CceEEEECCc-cc-------cC--ccccCCEEEEeecCcccccccccc
Confidence 36789999999999999999999999985 2345655541 11 00 011234578888 54321 12556
Q ss_pred cHHHHHHHHHhhhhHHHHhccHHHHHhHhhhhhcccCCCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 252 KVMEWVAAEEKYKQEVQMKNILPAVADKFLVDQHADQRGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 252 tV~eni~~~~~~~~~~~~~~~L~~la~~l~~~LSgGq~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
|+.+||.... . ..|+.+++||+..- .+.+++..+.....+++.|.|.
T Consensus 240 t~~~~i~~~l-------------------~-------~~pd~~l~~e~r~~------~~~~~l~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 240 TAATLLRSCL-------------------R-------MKPTRILLAELRGG------EAYDFINVAASGHGGSITSCHA 286 (361)
T ss_dssp CHHHHHHHHT-------------------T-------SCCSEEEESCCCST------HHHHHHHHHHTTCCSCEEEEEC
T ss_pred CHHHHHHHHH-------------------h-------cCCCEEEEcCchHH------HHHHHHHHHhcCCCeEEEEECC
Confidence 7777664321 1 46899999999852 2345666664433355555554
No 122
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.40 E-value=4.4e-07 Score=99.30 Aligned_cols=27 Identities=41% Similarity=0.714 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|+|++|+||+|||||||++++++...
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999998764
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.39 E-value=6.2e-08 Score=91.46 Aligned_cols=36 Identities=28% Similarity=0.433 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
.+|+.++|+||||||||||+++|++... .+.|++++
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~-----~g~i~i~~ 42 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPG-----VPKVHFHS 42 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS-----SCEEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccC-----CCeEEEcc
Confidence 4689999999999999999999999732 24566654
No 124
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.37 E-value=4.2e-07 Score=82.82 Aligned_cols=51 Identities=10% Similarity=0.046 Sum_probs=39.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCch
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQ 341 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~ 341 (587)
+..+|++||+..++......|.++++.....++.+|+|||..++++ ..|+.
T Consensus 75 ~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~-~~~~~ 125 (143)
T 3co5_A 75 EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSD-GISCE 125 (143)
T ss_dssp TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC---CHH
T ss_pred CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHH-HhCcc
Confidence 3568999999999888888888888776445678999999998888 66643
No 125
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.34 E-value=3.7e-08 Score=102.86 Aligned_cols=79 Identities=13% Similarity=0.006 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhH---HHHHHHHHHHhhhhhhcccceeeeeccCCCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAM---LKINEHMHRLWKNQVAEKSLRSSISGWITNLPFD 250 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm---~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~ 250 (587)
.+|+.++|+||||||||||+++|+|.+++ .. ++|.+.+.. ......+..+.. .-.+.+++|. ....+.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~-~~--g~V~l~g~D~~r~~a~eql~~~~~-----~~gv~~v~q~-~~~~p~ 197 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN-HG--FSVVIAASDTFRAGAIEQLEEHAK-----RIGVKVIKHS-YGADPA 197 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH-TT--CCEEEEEECCSSTTHHHHHHHHHH-----HTTCEEECCC-TTCCHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-cC--CEEEEEeecccccchHHHHHHHHH-----HcCceEEecc-ccCCHH
Confidence 46899999999999999999999999875 23 345444310 001111211111 1234566665 455667
Q ss_pred CcHHHHHHHHH
Q 007851 251 SKVMEWVAAEE 261 (587)
Q Consensus 251 ~tV~eni~~~~ 261 (587)
.+|.+|+.++.
T Consensus 198 ~~v~e~l~~~~ 208 (328)
T 3e70_C 198 AVAYDAIQHAK 208 (328)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 89999998764
No 126
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.33 E-value=8.1e-07 Score=93.40 Aligned_cols=140 Identities=13% Similarity=0.122 Sum_probs=76.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh-HHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA-MLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSK 252 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f-m~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~t 252 (587)
..|+.++|+|||||||||||++|+|...+. .+.+.+.+. ..++...+... . .....+.+.++++.. ..
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~-~-~~~~~~~v~~~~~~~------~~ 137 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALL-P-QSTLSKCVLVVTTSD------RP 137 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTS-C-HHHHTTEEEEEECTT------SC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhh-h-hhhhhceEEEEECCC------CC
Confidence 468999999999999999999999998752 345555432 12222211110 0 011123456666532 12
Q ss_pred HHHHHHHHHhhhhHHHHhccHHH-HHh---------HhhhhhcccCCCccEEEEeCC--CC-CCHHHHHHHHHHHHHHHh
Q 007851 253 VMEWVAAEEKYKQEVQMKNILPA-VAD---------KFLVDQHADQRGASILCFDEI--QT-VDVFAIVALSGIVSRLLS 319 (587)
Q Consensus 253 V~eni~~~~~~~~~~~~~~~L~~-la~---------~l~~~LSgGq~~p~LL~LDEP--t~-lD~~~a~~L~~Ll~~L~~ 319 (587)
..+.+........ +.+ +.+ +.+..||+|+++-.+. +-|| +. +|+.....+.++++++.+
T Consensus 138 ~~~r~~~~~~~~~-------~ae~~~~~~~~vl~~ld~~~~lS~g~r~v~la-l~~p~~t~Gldp~~~~~l~~ller~~~ 209 (347)
T 2obl_A 138 ALERMKAAFTATT-------IAEYFRDQGKNVLLMMDSVTRYARAARDVGLA-SGEPDVRGGFPPSVFSSLPKLLERAGP 209 (347)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHTTTCEEEEEEETHHHHHHHHHHHHHH-TTCCCCBTTBCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHHHH-------HHHHHHhccccHHHHHhhHHHHHHHHHHHHHH-cCCCCcccCCCHHHHHHHHHHHHHHhC
Confidence 2222221110000 000 011 2234455554222222 2233 34 999999999999999874
Q ss_pred --CCc-----EEEEecCCCc
Q 007851 320 --TGT-----VLVATSNRAP 332 (587)
Q Consensus 320 --~G~-----vvV~TSn~~P 332 (587)
.|. +|++++|...
T Consensus 210 ~~~GsiT~~~tVl~~thdl~ 229 (347)
T 2obl_A 210 APKGSITAIYTVLLESDNVN 229 (347)
T ss_dssp CSSSEEEEEEEEECCSSCCC
T ss_pred CCCCCeeeEEEEEEeCCCCC
Confidence 476 6777777653
No 127
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.31 E-value=1.3e-06 Score=89.31 Aligned_cols=28 Identities=21% Similarity=0.451 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+.|.+++|+||+|+|||+|.++++..+.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4679999999999999999999998774
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.30 E-value=5.9e-07 Score=90.22 Aligned_cols=27 Identities=44% Similarity=0.774 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+++|+||+|+|||||+++++..+.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 578999999999999999999998775
No 129
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.28 E-value=1.6e-06 Score=85.51 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..+.+++|+||+|+|||||+++++..+.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999998764
No 130
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.24 E-value=3e-06 Score=88.23 Aligned_cols=43 Identities=9% Similarity=-0.007 Sum_probs=34.1
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHh---CCcEEEEecCCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLS---TGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~---~G~vvV~TSn~~ 331 (587)
.+|.||++||++.+|......|.+++..+.. .++.+|+++|..
T Consensus 124 ~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 4588999999999988877777777776655 577788888864
No 131
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.22 E-value=1.5e-06 Score=91.42 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
++.++|+||||||||||+++|+|.+++
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999999999875
No 132
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.20 E-value=3.2e-06 Score=83.70 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|++|+||||||||||++++++.+.
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999875
No 133
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.17 E-value=3.3e-06 Score=86.36 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++++++|+||+|||||||++++++.+.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3579999999999999999999998774
No 134
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.16 E-value=5.6e-06 Score=75.38 Aligned_cols=51 Identities=10% Similarity=0.022 Sum_probs=36.7
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchh
Q 007851 291 ASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQR 342 (587)
Q Consensus 291 p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r 342 (587)
..+|++||+..++......|.+++... ...+.+|+|+|..++++-..|.-+
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~~~~~~~~~~~ 127 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQSQE-HRPFRLIGIGDTSLVELAASNHII 127 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHHSS-SCSSCEEEEESSCHHHHHHHSCCC
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHhhc-CCCEEEEEECCcCHHHHHHcCCCC
Confidence 468999999999988877777776221 224578899999888775544333
No 135
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.15 E-value=8.2e-06 Score=82.68 Aligned_cols=28 Identities=32% Similarity=0.494 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.++|++|+||||||||||++++++.+.+
T Consensus 43 ~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 43 TPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 5678999999999999999999998763
No 136
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=98.14 E-value=8.5e-06 Score=76.95 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=31.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++.+|++||+..++......|..++... ..+..+|+|+|..
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~~~~~ 142 (226)
T 2chg_A 101 APFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYV 142 (226)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCG
T ss_pred cCceEEEEeChhhcCHHHHHHHHHHHHhc-CCCCeEEEEeCCh
Confidence 46889999999998887777777777653 3356777788754
No 137
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.11 E-value=3.2e-06 Score=87.58 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++++++|+||+|||||||+++++..+
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 357999999999999999999999876
No 138
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.11 E-value=1.3e-06 Score=94.16 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|+|+||+|||||+++|+|...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 369999999999999999999875
No 139
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=98.09 E-value=2.3e-06 Score=95.04 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
+++.++|+||||||||||++++++.+.+ ..+++.+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~---~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR---KFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC---EEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC---CeEEEEecc
Confidence 5789999999999999999999998864 235555444
No 140
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.07 E-value=5.3e-06 Score=83.55 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|++|+||||||||||++++++.+.
T Consensus 72 ~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 72 IPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 457899999999999999999999875
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.06 E-value=3.8e-06 Score=86.69 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++.+++|+||+|||||+|+++++..+.
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 3578999999999999999999998764
No 142
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.05 E-value=3.2e-06 Score=92.55 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=51.9
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh--HHH-HHHHHHHHhhhhhhcccceeeeeccCCCCCC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA--MLK-INEHMHRLWKNQVAEKSLRSSISGWITNLPF 249 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f--m~~-v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~ 249 (587)
...|+.++|+|+||||||||+++|+|.+.+ .. ++|.+.+. ... -...+..+ ..+..+++++|.. ...+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~-~~--G~V~l~g~D~~r~aa~eQL~~~-----~~r~~I~vV~Q~~-~~~p 360 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQ-QG--KSVMLAAGDTFRAAAVEQLQVW-----GQRNNIPVIAQHT-GADS 360 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHH-TT--CCEEEECCCTTCHHHHHHHHHH-----HHHHTCCEECCST-TCCH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhh-cC--CeEEEecCcccchhhHHHHHHH-----HHhcCceEEeccc-CcCH
Confidence 356899999999999999999999999874 23 44544321 110 00111111 0124688999863 4456
Q ss_pred CCcHHHHHHHHH
Q 007851 250 DSKVMEWVAAEE 261 (587)
Q Consensus 250 ~~tV~eni~~~~ 261 (587)
..++.+|+.+..
T Consensus 361 ~~tV~e~l~~a~ 372 (503)
T 2yhs_A 361 ASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688999998764
No 143
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.05 E-value=2.7e-06 Score=98.28 Aligned_cols=29 Identities=34% Similarity=0.662 Sum_probs=26.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..+|+|++|+||+|||||||.+++++.+.
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999999998775
No 144
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.04 E-value=3.7e-07 Score=86.34 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
|+.++|+||||||||||++++++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc
Confidence 467899999999999999999873
No 145
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.03 E-value=8e-06 Score=89.82 Aligned_cols=28 Identities=39% Similarity=0.580 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|+|++|+||+|||||||++++++.+.
T Consensus 62 ~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 62 RIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3568899999999999999999999875
No 146
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.01 E-value=7e-06 Score=82.95 Aligned_cols=27 Identities=37% Similarity=0.603 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+++|+||+|||||||++++++.+.
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 478999999999999999999998764
No 147
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=98.00 E-value=3.4e-06 Score=78.10 Aligned_cols=43 Identities=23% Similarity=0.196 Sum_probs=37.3
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.+|++|+||||++ +|+.....+.+++..+.+.|.+||++||..
T Consensus 80 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~ 123 (148)
T 1f2t_B 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE 123 (148)
T ss_dssp SSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG
T ss_pred CCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH
Confidence 5799999999999 999999999999999877777777777753
No 148
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.00 E-value=1.8e-06 Score=80.63 Aligned_cols=66 Identities=17% Similarity=0.166 Sum_probs=43.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCCCCCcH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLPFDSKV 253 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~~~~tV 253 (587)
.+|+.++|+||||||||||+++|+|.+ + .. +.|.+.++. +. .. . ....+++|+. .++ .+||
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~-~~--G~V~~~g~~--i~-------~~--~--~~~~~~~q~~-~l~-~ltv 91 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI-G-HQ--GNVKSPTYT--LV-------EE--Y--NIAGKMIYHF-DLY-RLAD 91 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT-T-CC--SCCCCCTTT--CE-------EE--E--EETTEEEEEE-ECT-TCSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC-C-CC--CeEEECCEe--ee-------ee--c--cCCCcceecc-ccc-cCCc
Confidence 468999999999999999999999998 4 33 345555531 10 00 0 0012567763 334 7787
Q ss_pred HHHHH
Q 007851 254 MEWVA 258 (587)
Q Consensus 254 ~eni~ 258 (587)
.+|+.
T Consensus 92 ~e~l~ 96 (158)
T 1htw_A 92 PEELE 96 (158)
T ss_dssp TTHHH
T ss_pred HHHHH
Confidence 77774
No 149
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.99 E-value=1e-05 Score=80.18 Aligned_cols=27 Identities=37% Similarity=0.710 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+++++|+||+|||||||++++++.+.
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998765
No 150
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.99 E-value=2.6e-06 Score=78.75 Aligned_cols=26 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+||+|+|||||++.++..+
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35789999999999999999998765
No 151
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.99 E-value=9.5e-06 Score=85.13 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++.+++|+||+|||||||+++++..+.
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 3578999999999999999999998764
No 152
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.95 E-value=1.7e-06 Score=93.23 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.0
Q ss_pred CCCcE--EEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKG--LYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkg--lyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+|.. ++|+|||||||||||++|+|..
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred cCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 46888 9999999999999999999974
No 153
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.94 E-value=3.2e-05 Score=75.24 Aligned_cols=43 Identities=16% Similarity=0.100 Sum_probs=29.7
Q ss_pred CccEEEEeCCCC-C--CHHH-HHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 290 GASILCFDEIQT-V--DVFA-IVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 290 ~p~LL~LDEPt~-l--D~~~-a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
+|+++++|+++. . |... ...+..+.+.+.+.|++||+++|...
T Consensus 128 ~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~ 174 (247)
T 2dr3_A 128 NAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSV 174 (247)
T ss_dssp TCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred CCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 689999999998 3 5432 34455555555567888888888654
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.94 E-value=5.2e-06 Score=76.57 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+||+|+|||||++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 45789999999999999999998765
No 155
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.93 E-value=1.1e-05 Score=83.47 Aligned_cols=26 Identities=31% Similarity=0.544 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+||+|+|||||++.++..+
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998766
No 156
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.92 E-value=2.3e-05 Score=77.94 Aligned_cols=48 Identities=17% Similarity=0.148 Sum_probs=34.9
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCcccccc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWDLNQ 337 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~----------~~G~vvV~TSn~~PedLy~ 337 (587)
+..+|+|||+..++......|.++++.-. ..++.+|+|+|..+.++..
T Consensus 100 ~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~ 157 (265)
T 2bjv_A 100 DGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVN 157 (265)
T ss_dssp TTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHH
T ss_pred CCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHH
Confidence 35799999999988877777777766421 1246789999988776543
No 157
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.90 E-value=7.5e-06 Score=94.65 Aligned_cols=29 Identities=31% Similarity=0.564 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..+++|++|+||+|||||+|.+++++.+.
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 35689999999999999999999998875
No 158
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.88 E-value=5e-05 Score=72.26 Aligned_cols=42 Identities=10% Similarity=0.126 Sum_probs=29.2
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++.+|++||++.++......|..++... ..+..+|+|+|..
T Consensus 125 ~~~~vlviDe~~~l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~ 166 (250)
T 1njg_A 125 GRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDP 166 (250)
T ss_dssp SSSEEEEEETGGGSCHHHHHHHHHHHHSC-CTTEEEEEEESCG
T ss_pred CCceEEEEECcccccHHHHHHHHHHHhcC-CCceEEEEEeCCh
Confidence 46789999999998877666665555432 2356777777763
No 159
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.88 E-value=3.8e-05 Score=78.59 Aligned_cols=60 Identities=15% Similarity=0.342 Sum_probs=42.9
Q ss_pred CccEEEEeCCCCCC-HHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 290 GASILCFDEIQTVD-VFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 290 ~p~LL~LDEPt~lD-~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
++.+|++||+..+. ......|.++++... .++.+|+|+|..+ . +...|..+|.++.+...
T Consensus 105 ~~~vliiDEi~~l~~~~~~~~L~~~le~~~-~~~~iI~~~n~~~-~-------------l~~~l~sR~~~i~~~~~ 165 (324)
T 3u61_B 105 RQKVIVIDEFDRSGLAESQRHLRSFMEAYS-SNCSIIITANNID-G-------------IIKPLQSRCRVITFGQP 165 (324)
T ss_dssp CEEEEEEESCCCGGGHHHHHHHHHHHHHHG-GGCEEEEEESSGG-G-------------SCTTHHHHSEEEECCCC
T ss_pred CCeEEEEECCcccCcHHHHHHHHHHHHhCC-CCcEEEEEeCCcc-c-------------cCHHHHhhCcEEEeCCC
Confidence 68999999999977 777777777776653 3567888888753 1 23456667888877654
No 160
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.87 E-value=1.7e-05 Score=83.07 Aligned_cols=27 Identities=33% Similarity=0.683 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++++++|+||+|+|||||+++++..+.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999998764
No 161
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.84 E-value=1.4e-05 Score=86.42 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++++++|+||+|||||||+++++..+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 357999999999999999999999876
No 162
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.83 E-value=5.7e-06 Score=85.57 Aligned_cols=27 Identities=26% Similarity=0.678 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|+||+|+|||||++.+++.+.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 567999999999999999999998764
No 163
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.83 E-value=2.4e-05 Score=79.27 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++..++|+||+|+|||||+++++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999999988765
No 164
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=3.2e-05 Score=80.05 Aligned_cols=60 Identities=22% Similarity=0.282 Sum_probs=41.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
+.+|+++||...+....+..|..+++... ..+.+|+++|.. .. .+..|..+|.++.+...
T Consensus 110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~-~~~~~il~~n~~-~~-------------i~~~i~sR~~~~~~~~l 169 (340)
T 1sxj_C 110 GFKLIILDEADAMTNAAQNALRRVIERYT-KNTRFCVLANYA-HK-------------LTPALLSQCTRFRFQPL 169 (340)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTT-TTEEEEEEESCG-GG-------------SCHHHHTTSEEEECCCC
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhcCC-CCeEEEEEecCc-cc-------------cchhHHhhceeEeccCC
Confidence 47999999999877777777777776643 345666777753 11 23456678988887653
No 165
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.80 E-value=5.3e-05 Score=82.12 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=23.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..++|+||+|+|||||+++|+..+.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 6899999999999999999998875
No 166
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.80 E-value=2.3e-05 Score=85.98 Aligned_cols=28 Identities=36% Similarity=0.707 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++.+++|+||+|||||+|+++++....
T Consensus 236 ~~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 236 KPPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 3578999999999999999999988764
No 167
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=97.77 E-value=1.2e-05 Score=76.28 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|+.++|+||||||||||+++|+|..+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 578999999999999999999999874
No 168
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.76 E-value=5.1e-05 Score=80.22 Aligned_cols=27 Identities=37% Similarity=0.678 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+++|+||+|+|||+|+++++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 468999999999999999999987654
No 169
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.75 E-value=2.4e-05 Score=79.21 Aligned_cols=43 Identities=23% Similarity=0.191 Sum_probs=31.9
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHHHHh----------CCcEEEEecCCCcc
Q 007851 291 ASILCFDEIQTVDVFAIVALSGIVSRLLS----------TGTVLVATSNRAPW 333 (587)
Q Consensus 291 p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~----------~G~vvV~TSn~~Pe 333 (587)
..+|+|||+..++......|..+++.-.- .++++|+|||..+.
T Consensus 120 ~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~ 172 (311)
T 4fcw_A 120 YSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSP 172 (311)
T ss_dssp SEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHH
T ss_pred CeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHH
Confidence 47999999999988887777777765320 24568999998543
No 170
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.74 E-value=2e-05 Score=80.71 Aligned_cols=28 Identities=25% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..++|.|++|||||||+++|.+.+.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3578999999999999999999998875
No 171
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.71 E-value=4.1e-05 Score=80.39 Aligned_cols=27 Identities=26% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
++++.+.|+||+|+|||||+..++..+
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999988877544
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.71 E-value=0.00012 Score=82.17 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.++.++|+||+|||||||+++|++.+++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 4679999999999999999999999875
No 173
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.70 E-value=1.9e-05 Score=81.27 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=39.2
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
++.||++||+..++......|.++++.... ...+|+++|.+ .. .++.|..+|.++.+..
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~-~~-------------l~~~l~sR~~~i~~~~ 191 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTMETYSG-VTRFCLICNYV-TR-------------IIDPLASQCSKFRFKA 191 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCG-GG-------------SCHHHHHHSEEEECCC
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHhcCC-CceEEEEeCch-hh-------------CcchhhccCceEEeCC
Confidence 567999999988888877777777776533 34555566643 22 1234556777776654
No 174
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.69 E-value=0.00011 Score=74.35 Aligned_cols=60 Identities=17% Similarity=0.303 Sum_probs=40.6
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
.++.++++||+..++......|.++++.. ..++.+|+++|..+ . ....|..+|.++.+..
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~-~-------------l~~~l~sr~~~~~~~~ 168 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTMEMF-SSNVRFILSCNYSS-K-------------IIEPIQSRCAIFRFRP 168 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHHHT-TTTEEEEEEESCGG-G-------------SCHHHHHTEEEEECCC
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCCcc-c-------------cCHHHHhhCcEEEecC
Confidence 35789999999998887777777777653 23567777777642 1 1234556777777754
No 175
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.68 E-value=1e-05 Score=83.62 Aligned_cols=46 Identities=9% Similarity=0.022 Sum_probs=32.4
Q ss_pred hhcccC---CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 283 DQHADQ---RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 283 ~LSgGq---~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++|+|+ ..+++++++.+..+|.. ..+.++++.+. .+.+|+++||..
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~de~--~~l~~~l~~l~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVAGEA--EKLHERLARIN-ARAPVYTVTHGD 189 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTCSCT--HHHHHHHHHHC-SSSCEEECCSSC
T ss_pred hchHHHHHHHhCCEEEEECcccCCHH--HHHHHHHHHhC-CCCeEEEecccC
Confidence 677775 46788888888775533 56777787764 577777777753
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.68 E-value=1.7e-05 Score=76.38 Aligned_cols=42 Identities=21% Similarity=0.185 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA 215 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f 215 (587)
.+|+.++|.||||||||||+++|+|.+++.-...+.|+.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 468999999999999999999999998631012467776665
No 177
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.67 E-value=3.7e-05 Score=76.90 Aligned_cols=27 Identities=26% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+++|+||+|+|||||+++++....
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 568999999999999999999998654
No 178
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.65 E-value=1.7e-05 Score=75.04 Aligned_cols=26 Identities=19% Similarity=0.497 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
|+.++|+||||||||||+++|.|.++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46799999999999999999999886
No 179
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=97.65 E-value=1.9e-05 Score=76.97 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+.++|+||||||||||+++|+|..+
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999999873
No 180
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.63 E-value=0.00016 Score=74.26 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++..++|+||+|+|||||++.++....
T Consensus 54 ~~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999987764
No 181
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.62 E-value=6.3e-05 Score=77.21 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=34.2
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccccccCC
Q 007851 291 ASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWDLNQDG 339 (587)
Q Consensus 291 p~LL~LDEPt~lD~~~a~~L~~Ll~~L~----------~~G~vvV~TSn~~PedLy~~g 339 (587)
..+|+|||+..+.......|.++++... ...+.||+|+|..+.++...|
T Consensus 97 ~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g 155 (304)
T 1ojl_A 97 GGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAG 155 (304)
T ss_dssp TSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHT
T ss_pred CCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhC
Confidence 4689999999988877666666665431 123678999998876654443
No 182
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.62 E-value=4.2e-05 Score=88.84 Aligned_cols=29 Identities=34% Similarity=0.689 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+|++++|+||+|||||||++++++.+..
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 57899999999999999999999998763
No 183
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.62 E-value=0.00018 Score=74.57 Aligned_cols=26 Identities=19% Similarity=0.134 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|.++||+||+|+|||++++.++..+
T Consensus 44 ~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp CCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998766
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.60 E-value=2e-05 Score=75.59 Aligned_cols=27 Identities=26% Similarity=0.581 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|+.++|+||||||||||++++.|..+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 468899999999999999999999764
No 185
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=97.58 E-value=5.6e-05 Score=71.65 Aligned_cols=41 Identities=20% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
..|++++||||++ +|+.....+.+++..+.+.+.+||+|||
T Consensus 85 ~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~ 126 (173)
T 3kta_B 85 KPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLR 126 (173)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSC
T ss_pred CCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEec
Confidence 3578999999999 9999999999999998766656666655
No 186
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.54 E-value=4.3e-05 Score=71.94 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|+.++|+||||||||||+++|.+..+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3578999999999999999999999875
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.53 E-value=0.00023 Score=73.80 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+++|+||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 468999999999999999999998765
No 188
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.50 E-value=0.00018 Score=72.58 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=40.7
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
++.|+++||...++......|..+++.. ..++++|+++|.. .. + ...|..+|.++.+...
T Consensus 107 ~~~viiiDe~~~l~~~~~~~L~~~le~~-~~~~~~il~~~~~-~~----------l---~~~l~sr~~~i~~~~~ 166 (323)
T 1sxj_B 107 KHKIVILDEADSMTAGAQQALRRTMELY-SNSTRFAFACNQS-NK----------I---IEPLQSQCAILRYSKL 166 (323)
T ss_dssp CCEEEEEESGGGSCHHHHHTTHHHHHHT-TTTEEEEEEESCG-GG----------S---CHHHHTTSEEEECCCC
T ss_pred CceEEEEECcccCCHHHHHHHHHHHhcc-CCCceEEEEeCCh-hh----------c---hhHHHhhceEEeecCC
Confidence 4889999999988877776777777653 2356677777652 21 1 2345677888888654
No 189
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.47 E-value=0.00011 Score=76.20 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999998765
No 190
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.46 E-value=0.00037 Score=76.63 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|+||+|+|||||+++++..+.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999998763
No 191
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.44 E-value=6.5e-05 Score=88.05 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=46.2
Q ss_pred HhHhhhhhcccC-----------CCcc--EEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 277 ADKFLVDQHADQ-----------RGAS--ILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~p~--LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+++.+.+||||| .+|+ ||+||||++ ||+.+...|.++|+.|.+.|.+||+++|.
T Consensus 458 l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVtHd 525 (916)
T 3pih_A 458 LSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEHD 525 (916)
T ss_dssp TTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEECCC
T ss_pred ccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 356677999997 4555 999999999 99999999999999998888877777775
No 192
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.44 E-value=0.00014 Score=85.52 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=47.0
Q ss_pred hHhhhhhcccC-----------CC--ccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 278 DKFLVDQHADQ-----------RG--ASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 278 ~~l~~~LSgGq-----------~~--p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++.+.+||||| .+ |.||+||||++ ||+.+...|.++|+.|.+.|.+||+++|+.
T Consensus 516 ~r~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 583 (993)
T 2ygr_A 516 SRAAATLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDE 583 (993)
T ss_dssp TCBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH
T ss_pred CCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCH
Confidence 45567999996 44 68999999999 999999999999999999999888888863
No 193
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.43 E-value=0.0002 Score=73.51 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEe
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFH 213 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~ 213 (587)
+..++|+||+|+|||+|++.++..+.. .-.++.++
T Consensus 46 ~~~vll~G~pGtGKT~la~~la~~~~~---~~~~i~~~ 80 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSVNTLAKTMDL---DFHRIQFT 80 (331)
T ss_dssp TCCEEEESCCCHHHHHHHHHHHHHTTC---CEEEEECC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC---CeEEEecC
Confidence 468999999999999999999987753 22455543
No 194
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=97.42 E-value=4.6e-05 Score=74.38 Aligned_cols=28 Identities=21% Similarity=0.218 Sum_probs=18.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHH-hccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFY-GATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~-g~l~ 201 (587)
.+|+.++|+||||||||||+++|+ +..+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 468999999999999999999999 9873
No 195
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.39 E-value=0.00035 Score=73.55 Aligned_cols=28 Identities=25% Similarity=0.336 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++|+.+.|+||+|||||||+..++..+.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999998764
No 196
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.38 E-value=0.0001 Score=75.62 Aligned_cols=73 Identities=12% Similarity=0.133 Sum_probs=46.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC--CcccceEEEEE---ehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE--GIVKHRQRFHF---HEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNLP 248 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~--~~~~~k~rvhf---~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~~ 248 (587)
..|+.++|.||||||||||+++|+|.+. + ..| .|.+ +++-.. . ... ..++++ |. ...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~-~~G--~i~vi~~d~~~~~--~---~~~-------~~~~~v-q~-~~~~ 140 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWP-EHR--RVELITTDGFLHP--N---QVL-------KERGLM-KK-KGFP 140 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTST-TCC--CEEEEEGGGGBCC--H---HHH-------HHHTCT-TC-TTSG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCC-CCC--eEEEEecCCccCc--H---HHH-------HhCCEe-ec-CCCC
Confidence 4678999999999999999999999876 4 233 4444 443211 0 001 123455 43 3445
Q ss_pred CCCcHHHHHHHHHhh
Q 007851 249 FDSKVMEWVAAEEKY 263 (587)
Q Consensus 249 ~~~tV~eni~~~~~~ 263 (587)
..+++.+|+.+....
T Consensus 141 ~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 141 ESYDMHRLVKFVSDL 155 (308)
T ss_dssp GGBCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHH
Confidence 668999998765443
No 197
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.37 E-value=7e-05 Score=77.32 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++|+.++|+||||||||||+++|+|.+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3578999999999999999999999987
No 198
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.36 E-value=0.00013 Score=85.42 Aligned_cols=54 Identities=9% Similarity=0.093 Sum_probs=46.8
Q ss_pred hHhhhhhcccC-----------CC--ccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 278 DKFLVDQHADQ-----------RG--ASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 278 ~~l~~~LSgGq-----------~~--p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
++.+.+||||| .+ |.||+||||++ ||+.+...|.++|+.|.+.|.+||+++|+.
T Consensus 499 dR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl 566 (972)
T 2r6f_A 499 SRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDE 566 (972)
T ss_dssp SSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred CCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 44567999996 44 69999999999 999999999999999998899888888863
No 199
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.36 E-value=0.00033 Score=80.49 Aligned_cols=45 Identities=20% Similarity=0.163 Sum_probs=33.3
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHH----------hCCcEEEEecCCCccc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLL----------STGTVLVATSNRAPWD 334 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~----------~~G~vvV~TSn~~Ped 334 (587)
.+.+|+|||...+++.....|.++|+.-. ..++.||+|||..+..
T Consensus 579 ~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~ 633 (758)
T 3pxi_A 579 PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASE 633 (758)
T ss_dssp SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTC
T ss_pred CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhh
Confidence 46799999999888877777777776621 0245889999986653
No 200
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.35 E-value=8.9e-06 Score=94.45 Aligned_cols=28 Identities=32% Similarity=0.612 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++++++|+||+|||||||++++++.+.
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999998874
No 201
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=97.34 E-value=4.3e-05 Score=83.57 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=28.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
+.++|+|||||||||||++|+|+++| ..| .|.+++
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G--~I~~~g 64 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALIP-DLT--LLNFRN 64 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHCC-CTT--TCCCCC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCCC-CCC--EEEECC
Confidence 89999999999999999999999986 233 454444
No 202
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.34 E-value=0.00018 Score=73.72 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.|+.+.++|+||+||||++..+++.+.+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998863
No 203
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.34 E-value=0.00012 Score=69.39 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|+.++|+||||||||||+++|++.+.
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 578999999999999999999999884
No 204
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.34 E-value=7.3e-05 Score=75.41 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=39.3
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
.++.++++||...++......|.++++.. ..++++|+++|... . +...|..+|.++.+...
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~-~~~~~~i~~~~~~~-~-------------l~~~l~sr~~~i~~~~~ 161 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTMEMY-SKSCRFILSCNYVS-R-------------IIEPIQSRCAVFRFKPV 161 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTSSS-SSSEEEEEEESCGG-G-------------SCHHHHTTCEEEECCCC
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHHhc-CCCCeEEEEeCChh-h-------------cchHHHhhCeEEEecCC
Confidence 45899999999988776655555555432 13457777777532 1 13345677888887654
No 205
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.31 E-value=0.00018 Score=73.80 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|+.+.|+|+||+||||++..+++.+.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999999875
No 206
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.31 E-value=0.00013 Score=70.26 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
++|+.++|+||||||||||+++|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 35789999999999999999999998763
No 207
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.31 E-value=9.7e-05 Score=70.50 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+|+.++|+|+||||||||+++|++.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999999876
No 208
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.30 E-value=0.00018 Score=83.60 Aligned_cols=55 Identities=15% Similarity=0.138 Sum_probs=47.3
Q ss_pred HhHhhhhhcccC-----------CCc--cEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 277 ADKFLVDQHADQ-----------RGA--SILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 277 a~~l~~~LSgGq-----------~~p--~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
.++.+.+||||+ .+| .||+||||++ ||+.+...|.++++.|.+.|.+||+++|+.
T Consensus 373 l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl 441 (842)
T 2vf7_A 373 LDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDL 441 (842)
T ss_dssp TTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCH
T ss_pred ccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 456677999996 566 5999999999 999999999999999998898887777763
No 209
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.30 E-value=0.00024 Score=72.21 Aligned_cols=27 Identities=30% Similarity=0.391 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|+||+|+|||||++.++....
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~ 63 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELG 63 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987653
No 210
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.26 E-value=0.00019 Score=78.86 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+..+.|+||+|+|||+|++.++..+.
T Consensus 41 ~~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 41 GESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TCEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CCeeEeecCchHHHHHHHHHHHHHHh
Confidence 56899999999999999999998774
No 211
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.19 E-value=0.00016 Score=69.03 Aligned_cols=28 Identities=21% Similarity=0.179 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+|+.++|+|++|||||||++++++.+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999999999875
No 212
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.17 E-value=0.00021 Score=66.68 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=23.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
...+|+||||||||||+++|++++.+
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 38899999999999999999998764
No 213
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.17 E-value=0.00028 Score=82.24 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..++|+||+|+|||+|.++|+..+.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998764
No 214
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=97.16 E-value=0.00035 Score=72.23 Aligned_cols=61 Identities=8% Similarity=0.132 Sum_probs=38.5
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
.++.||++||.+.++......|..+++.. ..++++|++++..+ . + ...+..+|.++.+...
T Consensus 118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~-~~~~~~Il~~~~~~-~----------l---~~~l~sr~~~i~~~~l 178 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSRHSFNALLKTLEEP-PEHVKFLLATTDPQ-K----------L---PVTILSRCLQFHLKAL 178 (373)
T ss_dssp SSSEEEEEECGGGSCHHHHHHHHHHHHSC-CSSEEEEEEESCGG-G----------S---CHHHHTTSEEEECCCC
T ss_pred CCeEEEEEECcchhcHHHHHHHHHHHhcC-CCceEEEEEeCChH-h----------C---cHHHHhheeEeeCCCC
Confidence 45789999999998877766665555432 13456777777432 1 1 2234567777777543
No 215
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.16 E-value=0.00018 Score=66.36 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.++|+|++|||||||+++|++.+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999999875
No 216
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.14 E-value=0.0025 Score=66.38 Aligned_cols=36 Identities=22% Similarity=0.290 Sum_probs=27.6
Q ss_pred hhccccCCCCCCCCCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 161 KLDSLVGRCPTAPPAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 161 ~~~~~~~~~~~~~~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.||.+++. ..++|+.+.|+||+|+|||||+..++..
T Consensus 110 ~LD~~LgG---Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGG---GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTS---SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcC---CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35555431 2346889999999999999999988875
No 217
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.14 E-value=0.0016 Score=67.01 Aligned_cols=29 Identities=21% Similarity=0.183 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+|+.+.|+|+|||||||++..+++.+.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 46789999999999999999999998863
No 218
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.11 E-value=0.00026 Score=68.46 Aligned_cols=28 Identities=21% Similarity=0.396 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
-.|+.++|+||+|||||||+++|.+..+
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999999998765
No 219
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.10 E-value=0.0013 Score=75.31 Aligned_cols=47 Identities=21% Similarity=0.220 Sum_probs=30.9
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHH--h--------CCcEEEEecCCCccccc
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLL--S--------TGTVLVATSNRAPWDLN 336 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~--~--------~G~vvV~TSn~~PedLy 336 (587)
...+|||||+..+.+.....|.++|+.-. . .+++||+|||.....+.
T Consensus 557 ~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~ 613 (758)
T 1r6b_X 557 PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 613 (758)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECSSCC---
T ss_pred CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCcchhhhh
Confidence 46899999999887776666666665421 0 23468999998665543
No 220
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.10 E-value=0.00021 Score=67.94 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=36.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
++++|++||.+.+++. +.+.+..+.+.|..||+|....+ +++..|-+...++...-.|..+..
T Consensus 76 ~~dvviIDE~Q~~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~-------f~~~~f~~~~~ll~~ad~v~~l~~ 138 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPS----LFEVVKDLLDRGIDVFCAGLDLT-------HKQNPFETTALLLSLADTVIKKKA 138 (184)
T ss_dssp TEEEEEECCGGGSCTT----HHHHHHHHHHTTCEEEEEEESBC-------TTSCBCHHHHHHHHHCSEEEECCB
T ss_pred CCCEEEEECcccCCHH----HHHHHHHHHHCCCCEEEEeeccc-------cccCCccchHHHHHHhhheEEeee
Confidence 5789999999987653 33455666667886666655321 233345554444433223444443
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.10 E-value=0.0022 Score=69.23 Aligned_cols=28 Identities=11% Similarity=0.003 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++|+.+.|.|++|+|||||+..+++.+.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999987654
No 222
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.08 E-value=0.00029 Score=77.64 Aligned_cols=37 Identities=14% Similarity=0.137 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
.|++++|.|||||||||||+++.|.+++ ..+.|.+.+
T Consensus 259 ~g~~i~I~GptGSGKTTlL~aL~~~i~~---~~giitied 295 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTLNAIMMFIPP---DAKVVSIED 295 (511)
T ss_dssp TTCCEEEEESTTSSHHHHHHHHGGGSCT---TCCEEEEES
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCC---CCCEEEEcC
Confidence 5788999999999999999999999975 234454443
No 223
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00031 Score=65.02 Aligned_cols=26 Identities=23% Similarity=0.192 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+++.++|+|++|||||||+++|++.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999865
No 224
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.06 E-value=0.00025 Score=69.40 Aligned_cols=27 Identities=33% Similarity=0.520 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..+|+.++|.|++|||||||+++|++.
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 356889999999999999999999987
No 225
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.06 E-value=0.00026 Score=72.51 Aligned_cols=28 Identities=21% Similarity=0.165 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.++.++|+||||||||||+++|+|...+
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~~ 195 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLKL 195 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhcccccc
Confidence 4689999999999999999999999875
No 226
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.04 E-value=6.1e-05 Score=74.50 Aligned_cols=35 Identities=29% Similarity=0.272 Sum_probs=26.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
+.++|+||||||||||+++|+|.+.+. .| .|.|++
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~-~G--~i~~~g 62 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPD-LT--LLHFRN 62 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCC-TT--TC----
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccC-CC--eEEECC
Confidence 567899999999999999999999863 33 455554
No 227
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.03 E-value=0.0013 Score=72.53 Aligned_cols=72 Identities=18% Similarity=0.273 Sum_probs=40.8
Q ss_pred Ccc-EEEEeCCCC-CCHHHHHHHHHHHHHHHh----CCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 290 GAS-ILCFDEIQT-VDVFAIVALSGIVSRLLS----TGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 290 ~p~-LL~LDEPt~-lD~~~a~~L~~Ll~~L~~----~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
.|. +|++||++. ++.. ...+.++|..+.+ .|+.+|++++++..+.....+ ...+.. --++.+.+
T Consensus 296 lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i--------~~n~~~-RI~lrv~s 365 (512)
T 2ius_A 296 EPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLI--------KANIPT-RIAFTVSS 365 (512)
T ss_dssp CCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHH--------HHHCCE-EEEECCSS
T ss_pred CCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHH--------HhhcCC-eEEEEcCC
Confidence 465 899999987 5532 2345555655543 377888999987644222111 111111 12455677
Q ss_pred chhhhhhh
Q 007851 364 EVDYRRLI 371 (587)
Q Consensus 364 ~~DyR~~~ 371 (587)
..|.|...
T Consensus 366 ~~dsr~il 373 (512)
T 2ius_A 366 KIDSRTIL 373 (512)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 77777653
No 228
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.03 E-value=0.00026 Score=76.10 Aligned_cols=28 Identities=18% Similarity=0.160 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
++..++|.|||||||||||+++.|.+++
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 5678999999999999999999999875
No 229
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.00 E-value=0.00053 Score=69.36 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+..++.|+||+|+|||+|.++++..+.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 346899999999999999999998654
No 230
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.00 E-value=0.00026 Score=73.31 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+++.++|+||||+|||||++++++.+.
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~ 76 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQ 76 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 357899999999999999999999874
No 231
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.96 E-value=0.00035 Score=68.90 Aligned_cols=38 Identities=18% Similarity=0.289 Sum_probs=28.2
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCC
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRA 331 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~ 331 (587)
+++++++||.+.++.. +.+++..+.+.|+.||++-++.
T Consensus 89 ~~dvViIDEaQ~l~~~----~ve~l~~L~~~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDR----ICEVANILAENGFVVIISGLDK 126 (223)
T ss_dssp TCCEEEECSGGGSCTH----HHHHHHHHHHTTCEEEEECCSB
T ss_pred CCCEEEEecCccCcHH----HHHHHHHHHhCCCeEEEEeccc
Confidence 5899999999987653 3345566666788888887754
No 232
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.95 E-value=0.00087 Score=70.17 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++..++|+||+|+|||||+++++..+.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999998774
No 233
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.93 E-value=0.0013 Score=63.50 Aligned_cols=61 Identities=13% Similarity=0.261 Sum_probs=40.4
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecC
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIG 362 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~ 362 (587)
+.++|++||.|-+ . + +.+++..|.+.|+.||++.-+. -++++.|-+...+|.-.-.|..+.
T Consensus 91 ~~DvIlIDEaQFf-k-~---~ve~~~~L~~~gk~VI~~GL~~-------DF~~~~F~~~~~Ll~~Ad~v~kl~ 151 (195)
T 1w4r_A 91 GVAVIGIDEGQFF-P-D---IVEFCEAMANAGKTVIVAALDG-------TFQRKPFGAILNLVPLAESVVKLT 151 (195)
T ss_dssp TCSEEEESSGGGC-T-T---HHHHHHHHHHTTCEEEEEEESB-------CTTSSBCTTGGGGGGGCSEEEECC
T ss_pred CCCEEEEEchhhh-H-H---HHHHHHHHHHCCCeEEEEeccc-------ccccccchhHHHHHHhcCeEEEee
Confidence 5799999999987 2 2 4566688888898777765542 144566766666665444455443
No 234
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.92 E-value=0.00038 Score=72.56 Aligned_cols=36 Identities=17% Similarity=0.185 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEE
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRF 210 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rv 210 (587)
..+..++|+|+||||||||+++++|.+.+ ..++..|
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~-~~g~v~i 88 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTA-AGHKVAV 88 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhh-CCCEEEE
Confidence 35789999999999999999999998864 2344444
No 235
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.90 E-value=0.00049 Score=75.68 Aligned_cols=47 Identities=23% Similarity=0.361 Sum_probs=41.3
Q ss_pred hh-cccC-----------CCc--cEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 283 DQ-HADQ-----------RGA--SILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 283 ~L-SgGq-----------~~p--~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.| |||+ .+| ++|+||||++ +|+..+..+.++|..+.+ |.+||++||.
T Consensus 396 ~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 396 DVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp SSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred hcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 46 9997 588 9999999999 999999999999999987 7777777775
No 236
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.89 E-value=0.0029 Score=65.78 Aligned_cols=25 Identities=32% Similarity=0.278 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
++..+.|+||+|+|||||+..++..
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 4567899999999999999988754
No 237
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.89 E-value=0.00053 Score=72.26 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC-C
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE-G 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~-~ 202 (587)
.|+.++|+||||+|||||+++|.|... +
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~ 242 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEI 242 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccccc
Confidence 478999999999999999999999887 5
No 238
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.89 E-value=0.0016 Score=67.50 Aligned_cols=29 Identities=21% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.+|+.+.|+|+||+||||++..+++.+.+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999998863
No 239
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.87 E-value=0.0013 Score=76.76 Aligned_cols=26 Identities=23% Similarity=0.324 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.+++|+||+|+|||||++.++..+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 34678999999999999999999765
No 240
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.85 E-value=0.00032 Score=66.17 Aligned_cols=38 Identities=21% Similarity=0.103 Sum_probs=28.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
+.++|+|++|||||||++++.+.+++.--..+.|.+++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg 40 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHA 40 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcC
Confidence 57999999999999999999999874200145666554
No 241
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.81 E-value=0.00059 Score=65.22 Aligned_cols=28 Identities=25% Similarity=0.160 Sum_probs=25.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..++|.|++|||||||+++|.+.++
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999999999875
No 242
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.80 E-value=0.00046 Score=66.74 Aligned_cols=45 Identities=11% Similarity=0.141 Sum_probs=30.0
Q ss_pred CCccEEEEeCCCC---CCHHHHHHHHHHHHHHHhCCcEEEEecCCCccc
Q 007851 289 RGASILCFDEIQT---VDVFAIVALSGIVSRLLSTGTVLVATSNRAPWD 334 (587)
Q Consensus 289 ~~p~LL~LDEPt~---lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~Ped 334 (587)
.+.++|+|||+.. ++.-+...+.+++.... .++-||+|+|.+|.+
T Consensus 119 ~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp-~~~~vIlTGr~ap~~ 166 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAYDYLPLEEVISALNARP-GHQTVIITGRGCHRD 166 (196)
T ss_dssp TTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSC-TTCEEEEECSSCCHH
T ss_pred CCCCEEEEeCCCccccCCCCCHHHHHHHHHhCc-CCCEEEEECCCCcHH
Confidence 4689999999953 33333334555554321 356899999999886
No 243
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.76 E-value=0.00092 Score=63.74 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++..++|.|++|||||||+++|.+.++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998763
No 244
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.76 E-value=0.0043 Score=64.11 Aligned_cols=61 Identities=15% Similarity=0.192 Sum_probs=40.0
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCCc
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGSE 364 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~~ 364 (587)
.+.+|+++||...+....+..|...+++- ..++++|+++|.+ +. . +..|..+|.++.+...
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lEep-~~~~~~Il~t~~~-~~----------l---~~ti~SRc~~~~~~~~ 167 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLEEP-PAETWFFLATREP-ER----------L---LATLRSRCRLHYLAPP 167 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHTSC-CTTEEEEEEESCG-GG----------S---CHHHHTTSEEEECCCC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhcCC-CCCeEEEEEeCCh-Hh----------C---cHHHhhcceeeeCCCC
Confidence 46799999999998777666555554431 1245667777652 22 2 3356689999998754
No 245
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.76 E-value=0.00072 Score=67.18 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHh
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g 198 (587)
++..++|.||+|||||||+++|+.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~ 49 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAE 49 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999993
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=96.75 E-value=0.00079 Score=68.99 Aligned_cols=72 Identities=13% Similarity=-0.082 Sum_probs=41.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEE-ehhHHHHHHHHHHHhhhhhhcccceeeeeccCCCC----CC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHF-HEAMLKINEHMHRLWKNQVAEKSLRSSISGWITNL----PF 249 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf-~~fm~~v~~~l~~~~~~~~~~~~~ig~v~q~~~~~----~~ 249 (587)
.++.++|+||||+|||||+++|. ...+ ..|...+.. .+ .++. ... .......+|+++|.+... ++
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~~-~~G~i~~~~~~G--~~~t----~~~--~~~~~~~~g~v~d~pg~~~~~l~~ 233 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEEL-RTQEVSEKTERG--RHTT----TGV--RLIPFGKGSFVGDTPGFSKVEATM 233 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCCC-CCSCC-----------CC----CCE--EEEEETTTEEEESSCCCSSCCGGG
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-HhhC-cccccccccCCC--CCce----eeE--EEEEcCCCcEEEECcCcCcCcccc
Confidence 47899999999999999999999 7765 234333210 11 1100 000 000112578999875221 25
Q ss_pred CCcHHHHH
Q 007851 250 DSKVMEWV 257 (587)
Q Consensus 250 ~~tV~eni 257 (587)
.+|+ +|+
T Consensus 234 ~lt~-e~l 240 (302)
T 2yv5_A 234 FVKP-REV 240 (302)
T ss_dssp TSCG-GGG
T ss_pred cCCH-HHH
Confidence 6788 777
No 247
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.72 E-value=0.0011 Score=70.92 Aligned_cols=41 Identities=12% Similarity=0.310 Sum_probs=35.7
Q ss_pred CccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 290 GASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 290 ~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+|++|+||||++ ||+.....|.+++..+...|.++|+|||.
T Consensus 355 ~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~ 396 (430)
T 1w1w_A 355 PSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLK 396 (430)
T ss_dssp CCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSC
T ss_pred CCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 799999999999 99999999999999986667767777775
No 248
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.70 E-value=0.00086 Score=61.52 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+...+|+||||+|||||+++|+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999987543
No 249
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.68 E-value=0.00087 Score=69.58 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|-.++|.||||||||||+++|.+.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3567999999999999999999999875
No 250
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.65 E-value=0.0011 Score=69.83 Aligned_cols=41 Identities=15% Similarity=0.204 Sum_probs=32.8
Q ss_pred CC-ccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 289 RG-ASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 ~~-p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+ |++|+||||++ +|+..+..+.+++..+... .+||+|||.
T Consensus 303 ~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~vi~~th~ 345 (371)
T 3auy_A 303 GNRVECIILDEPTVYLDENRRAKLAEIFRKVKSI-PQMIIITHH 345 (371)
T ss_dssp SSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSC-SEEEEEESC
T ss_pred cCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccC-CeEEEEECh
Confidence 36 99999999999 9999999999999886433 345555564
No 251
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.65 E-value=0.00039 Score=71.81 Aligned_cols=28 Identities=21% Similarity=0.236 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
+++.++|+||||+|||||+++|.|...+
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~~~ 199 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPELGL 199 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccccc
Confidence 5789999999999999999999998875
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.62 E-value=0.008 Score=61.89 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
++|+.+.|+||+|+|||||+..++..+
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 468899999999999999999888654
No 253
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.62 E-value=0.001 Score=71.23 Aligned_cols=28 Identities=25% Similarity=0.192 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
.|+.++|+||||||||||+++|++++.+
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 4689999999999999999999998864
No 254
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.61 E-value=0.0016 Score=70.73 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+||+|+|||+|++.|+..+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 35688999999999999999999765
No 255
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=96.60 E-value=0.0012 Score=69.01 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.2
Q ss_pred CCcEEEE--EcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYL--YGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL--~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++| +||.|+|||||++.++..+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 4578899 99999999999999987653
No 256
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.59 E-value=0.00099 Score=63.35 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+++.++|+|++||||||+.+.|++.+.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999999998764
No 257
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.58 E-value=0.0061 Score=64.02 Aligned_cols=27 Identities=33% Similarity=0.404 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+++..+.|+|++|+|||||+-.++..+
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998877544
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.57 E-value=0.0011 Score=63.78 Aligned_cols=26 Identities=23% Similarity=0.285 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+..++|.||+||||||++++|++.+.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999998653
No 259
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.51 E-value=0.0038 Score=78.21 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEehh
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHEA 215 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~f 215 (587)
++++++.|+||+|||||||...++..... .+.++.|..+
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~---~G~~v~Fi~~ 1463 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQR---EGKTCAFIDA 1463 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHT---TTCCEEEECT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEEc
Confidence 46899999999999999999988764431 2345555543
No 260
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.50 E-value=0.0057 Score=65.98 Aligned_cols=27 Identities=30% Similarity=0.212 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|..+.+.|++|+||||++..|+..+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~ 122 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK 122 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999998775
No 261
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.48 E-value=0.00077 Score=63.73 Aligned_cols=27 Identities=11% Similarity=0.196 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..+..++|+|+||+|||||++.|.|..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999998875
No 262
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.48 E-value=0.0014 Score=62.65 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|+.++|.||+|||||||++.|...++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 578999999999999999999987764
No 263
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.46 E-value=0.0015 Score=69.20 Aligned_cols=28 Identities=25% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+++++++|+||+|||||||++++++...
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4688999999999999999999998653
No 264
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.44 E-value=0.0015 Score=62.18 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g 198 (587)
..++|.|++||||||+.++|++
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999988
No 265
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.42 E-value=0.0016 Score=61.23 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
-.++|+|+||+|||||++.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~~ 54 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNEF 54 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCCC
Confidence 4689999999999999999998754
No 266
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.36 E-value=0.0016 Score=61.42 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
-.++|+|++|+|||||++.|.|..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 368999999999999999999874
No 267
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.36 E-value=0.0017 Score=61.48 Aligned_cols=21 Identities=38% Similarity=0.659 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHh
Q 007851 178 GLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g 198 (587)
.++|.|++||||||+.++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999998
No 268
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.35 E-value=0.002 Score=59.90 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|+.++|.|++||||||++++|++.+.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 578999999999999999999998764
No 269
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=96.35 E-value=0.0047 Score=71.33 Aligned_cols=25 Identities=28% Similarity=0.336 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
++.+.|.||+||||||++.++....
T Consensus 109 ~~~vii~gpTGSGKTtllp~ll~~~ 133 (773)
T 2xau_A 109 NQIMVFVGETGSGKTTQIPQFVLFD 133 (773)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999988886543
No 270
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=96.29 E-value=0.0097 Score=76.79 Aligned_cols=37 Identities=30% Similarity=0.437 Sum_probs=25.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccCCcccceEEEEEeh
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATEGIVKHRQRFHFHE 214 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~~~~~~k~rvhf~~ 214 (587)
++++.|+||+|||||+|++.+....+. ..-..++|+.
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~--~~~~~infsa 1303 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSL--YDVVGINFSK 1303 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSS--CEEEEEECCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCC--CceEEEEeec
Confidence 689999999999999999544443332 1234566654
No 271
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.29 E-value=0.0019 Score=61.22 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|.|++|||||||.+.|++.+.
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987653
No 272
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.27 E-value=0.0022 Score=61.78 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+...+|+||||||||||+++|.-.+
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999987544
No 273
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.27 E-value=0.007 Score=61.41 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..+.|+||.|+|||||++.++....
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 5899999999999999999987653
No 274
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.22 E-value=0.002 Score=67.89 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.++|+||||+|||||+++|+++
T Consensus 28 ~~~i~G~nG~GKttll~ai~~~ 49 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLLEAAYLA 49 (359)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCChhHHHHHHHHh
Confidence 8999999999999999999974
No 275
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.22 E-value=0.0025 Score=58.75 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
|..++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 46899999999999999999998775
No 276
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.22 E-value=0.0011 Score=65.51 Aligned_cols=27 Identities=41% Similarity=0.704 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+++++|+||+|+|||||+++++..+.
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 467899999999999999999998654
No 277
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.13 E-value=0.0031 Score=58.95 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..++|.|++||||||+.+.++..+.
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998875
No 278
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.12 E-value=0.0055 Score=60.09 Aligned_cols=62 Identities=16% Similarity=0.266 Sum_probs=36.4
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEec
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPI 361 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l 361 (587)
.+.+++++||.|-+|.. +.+.+..+.+.|+.||+.-=+ .-++++.|-+...+|.-.-.|..+
T Consensus 100 ~~~dvV~IDEaQFf~~~----~v~~l~~la~~gi~Vi~~GLd-------~DF~~~~F~~~~~Ll~~Ad~v~kl 161 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDE----IVSIVEKLSADGHRVIVAGLD-------MDFRGEPFEPMPKLMAVSEQVTKL 161 (219)
T ss_dssp TTCSEEEECCGGGSCTH----HHHHHHHHHHTTCEEEEEEES-------BCTTSCBCTTHHHHHHHCSEEEEE
T ss_pred cCCCEEEEechhcCCHH----HHHHHHHHHHCCCEEEEeecc-------cccccCCCccHHHHHHhcceEEEe
Confidence 36789999999997754 334455555678855443221 123445566665555444444444
No 279
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.10 E-value=0.022 Score=55.42 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFY 197 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~ 197 (587)
.++.+.+.||+||||||++.++.
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHHH
Confidence 36889999999999999887664
No 280
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.07 E-value=0.0097 Score=62.73 Aligned_cols=27 Identities=26% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+++..+.|+|++|+|||||+-.++..+
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 468899999999999999987776443
No 281
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.03 E-value=0.0021 Score=71.48 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=26.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
..|+.++|+|+||||||||+++|++.+.+
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 46789999999999999999999999874
No 282
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.96 E-value=0.0062 Score=69.88 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..+.|+||+|+|||++.+.++..+
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999998765
No 283
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.96 E-value=0.0044 Score=58.11 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..+..++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 35678999999999999999999876
No 284
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.90 E-value=0.004 Score=56.73 Aligned_cols=25 Identities=12% Similarity=-0.035 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..+.|.|++||||||+.+.|+..+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987653
No 285
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.87 E-value=0.0041 Score=59.59 Aligned_cols=28 Identities=21% Similarity=0.148 Sum_probs=25.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..+.|.|++||||||+++.+++.+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3578999999999999999999998875
No 286
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.87 E-value=0.04 Score=56.25 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
++++.+.|+|++|+|||||+..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999887753
No 287
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.83 E-value=0.0039 Score=62.26 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.++|+|++||||||+.++|++.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999999998764
No 288
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=95.82 E-value=0.0038 Score=65.67 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCccEEEEeCCCC-CCHHHHHHHHHHHHHHHhCCcEEEEecC
Q 007851 289 RGASILCFDEIQT-VDVFAIVALSGIVSRLLSTGTVLVATSN 329 (587)
Q Consensus 289 ~~p~LL~LDEPt~-lD~~~a~~L~~Ll~~L~~~G~vvV~TSn 329 (587)
.+|+||+||||++ ||+..+..|.+++..+. .++|++||
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th 329 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTE 329 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESS
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEe
Confidence 4899999999999 99999999999988763 67777777
No 289
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.81 E-value=0.0042 Score=57.68 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|..+.|.|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998654
No 290
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.81 E-value=0.017 Score=55.79 Aligned_cols=24 Identities=33% Similarity=0.584 Sum_probs=20.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHH
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFY 197 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~ 197 (587)
++|..+.|.|++|+|||+|+--|+
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 468999999999999999976543
No 291
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.80 E-value=0.0098 Score=58.18 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=41.0
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEecCC
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPIGS 363 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l~~ 363 (587)
+.+++++||.+-+|.... +++..+...|+.||++-.+. -++++.|-+.-.+|.-.-.|..|..
T Consensus 101 ~~dvViIDEaQF~~~~~V----~~l~~l~~~~~~Vi~~Gl~~-------DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIV----EVVQVLANRGYRVIVAGLDQ-------DFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGGSCTTHH----HHHHHHHHTTCEEEEEECSB-------CTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECcccCCHHHH----HHHHHHhhCCCEEEEEeccc-------ccccCccccHHHHHHhcccEEeeee
Confidence 478999999999765432 55666667788777776643 1445566666666654445555543
No 292
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.78 E-value=0.0051 Score=56.45 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g 198 (587)
|..+.|.|++||||||+.+.++.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 46799999999999999999987
No 293
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.74 E-value=0.005 Score=60.80 Aligned_cols=43 Identities=19% Similarity=0.129 Sum_probs=30.4
Q ss_pred CccEEEEeCCCC--CCHHHHHHHHHHHHHHHhCCcEEEEecCCCc
Q 007851 290 GASILCFDEIQT--VDVFAIVALSGIVSRLLSTGTVLVATSNRAP 332 (587)
Q Consensus 290 ~p~LL~LDEPt~--lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~P 332 (587)
.|+++++||+.. .+......++..+..+...|.-|++|+|.-.
T Consensus 84 ~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~Nlqh 128 (228)
T 2r8r_A 84 APSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVNVQH 128 (228)
T ss_dssp CCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEccccc
Confidence 589999999975 3433334445555667788988889999653
No 294
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.73 E-value=0.0056 Score=56.98 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|..+.|.|++||||||+.+.++..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 46889999999999999999998755
No 295
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.71 E-value=0.0055 Score=56.48 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
++..+.|+|++|+|||||++.|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45789999999999999999999853
No 296
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.65 E-value=0.0097 Score=56.99 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=26.9
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
+.++|++||.+-+|+.. ...++.+...|+.||++..+
T Consensus 81 ~~dvViIDEaqfl~~~~----v~~l~~l~~~~~~Vi~~Gl~ 117 (191)
T 1xx6_A 81 DTEVIAIDEVQFFDDEI----VEIVNKIAESGRRVICAGLD 117 (191)
T ss_dssp TCSEEEECSGGGSCTHH----HHHHHHHHHTTCEEEEEECS
T ss_pred cCCEEEEECCCCCCHHH----HHHHHHHHhCCCEEEEEecc
Confidence 46899999999887543 34566666778877777654
No 297
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.63 E-value=0.0052 Score=55.95 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..+.|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999853
No 298
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=95.62 E-value=0.01 Score=63.24 Aligned_cols=37 Identities=5% Similarity=-0.097 Sum_probs=28.1
Q ss_pred CCc--cEEEEeCCCC-CCHHHHHHHHHHHHHH-HhCCcEEE
Q 007851 289 RGA--SILCFDEIQT-VDVFAIVALSGIVSRL-LSTGTVLV 325 (587)
Q Consensus 289 ~~p--~LL~LDEPt~-lD~~~a~~L~~Ll~~L-~~~G~vvV 325 (587)
.+| +++++||++. .|+.........+..+ ...|.+++
T Consensus 138 ~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~ 178 (392)
T 1ni3_A 138 VDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE 178 (392)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS
T ss_pred cCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 478 8999999988 8888887777777777 55565543
No 299
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.61 E-value=0.0069 Score=56.16 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++.+.|+|++||||||+.+.++..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998655
No 300
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.60 E-value=0.0059 Score=55.21 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=18.6
Q ss_pred cEEEEEcCCCChHHHHHHHH
Q 007851 177 KGLYLYGNVGSGKTMLMDMF 196 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~ 196 (587)
..++|.|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 301
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.60 E-value=0.0064 Score=56.46 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+.|+|++||||||+.+.|+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999987653
No 302
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.59 E-value=0.014 Score=57.89 Aligned_cols=60 Identities=13% Similarity=0.263 Sum_probs=37.6
Q ss_pred CccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCCCccccccCCchhHHhHHHHHhhccceeEEec
Q 007851 290 GASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNRAPWDLNQDGMQREIFQKLVAKLEKHCEIIPI 361 (587)
Q Consensus 290 ~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~~PedLy~~gl~r~~F~p~I~~L~~~~~Vv~l 361 (587)
+.+++++||.+-+.. +.++++.+.+.|+.||+|-.+. -++++.|-+.-.+|...-.|..|
T Consensus 90 ~~dvViIDEaQF~~~-----v~el~~~l~~~gi~VI~~GL~~-------DF~~~~F~~~~~Ll~~AD~Vtel 149 (234)
T 2orv_A 90 GVAVIGIDEGQFFPD-----IVEFCEAMANAGKTVIVAALDG-------TFQRKPFGAILNLVPLAESVVKL 149 (234)
T ss_dssp TCSEEEESSGGGCTT-----HHHHHHHHHHTTCEEEEECCSB-------CTTSSBCTTGGGGGGGCSEEEEC
T ss_pred cCCEEEEEchhhhhh-----HHHHHHHHHhCCCEEEEEeccc-------ccccCCcccHHHHHHhcccEEee
Confidence 579999999998531 5666666667899888877652 13344555544454433334433
No 303
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.59 E-value=0.0066 Score=56.24 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+..+.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999987553
No 304
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.57 E-value=0.0054 Score=61.39 Aligned_cols=27 Identities=26% Similarity=0.463 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|+||+|+|||+|++.++..+.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999998764
No 305
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.56 E-value=0.0059 Score=63.75 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|+|++|+|||||++.|.+.+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~ 99 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLT 99 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999998765
No 306
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.54 E-value=0.0074 Score=58.85 Aligned_cols=27 Identities=15% Similarity=0.165 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..+..++|.|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999999755
No 307
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.53 E-value=0.019 Score=71.26 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=25.1
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++++.+.|+||+|+|||||+..++..+.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999999887653
No 308
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.53 E-value=0.0054 Score=60.71 Aligned_cols=28 Identities=25% Similarity=0.368 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..+.|.|++||||||+.+.++..+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3578999999999999999999998764
No 309
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.45 E-value=0.0085 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+..++|.|++||||||+.++|+..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4678999999999999999999875
No 310
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.42 E-value=0.0084 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.455 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
...+.|+|++|+|||||++.|.+.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999874
No 311
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.40 E-value=0.0087 Score=58.62 Aligned_cols=28 Identities=25% Similarity=0.312 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..+.|.|++||||||+++.++..+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4678999999999999999999998875
No 312
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.40 E-value=0.006 Score=56.35 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=19.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|..+.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987654
No 313
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.39 E-value=0.0076 Score=57.57 Aligned_cols=22 Identities=23% Similarity=0.572 Sum_probs=19.5
Q ss_pred EEEEcCCCChHHHHHHHHHhcc
Q 007851 179 LYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 179 lyL~GpnGsGKTTLm~l~~g~l 200 (587)
|.|.||+|+|||||++.+....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999887544
No 314
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.35 E-value=0.01 Score=55.69 Aligned_cols=26 Identities=19% Similarity=0.006 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|..+.|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999999876
No 315
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.35 E-value=0.0068 Score=56.23 Aligned_cols=22 Identities=41% Similarity=0.656 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.|+|++|+|||||++.|.+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999885
No 316
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.33 E-value=0.0087 Score=56.01 Aligned_cols=24 Identities=21% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998653
No 317
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.33 E-value=0.014 Score=65.01 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.+.|.|++|+||||++..+...+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~ 229 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAE 229 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 47899999999999999999987654
No 318
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.31 E-value=0.0097 Score=55.46 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|.|++||||||+.+.|+..+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987653
No 319
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.29 E-value=0.0085 Score=55.33 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.|.|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 589999999999999999987664
No 320
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.28 E-value=0.0096 Score=55.19 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
|..+.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998654
No 321
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.27 E-value=0.038 Score=69.49 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
+.++.+.|+||+|||||||+..|.-.
T Consensus 1079 ~~g~~vll~G~~GtGKT~la~~~~~e 1104 (2050)
T 3cmu_A 1079 PMGRIVEIYGPESSGKTTLTLQVIAA 1104 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999988743
No 322
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.24 E-value=0.0095 Score=56.11 Aligned_cols=26 Identities=23% Similarity=0.152 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
|..++|.|++||||||+.+.|+..+.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 57899999999999999999998765
No 323
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.22 E-value=0.0098 Score=60.33 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..+.|.||+|||||||.+.+...++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3578899999999999999999987653
No 324
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.21 E-value=0.011 Score=56.51 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHh
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g 198 (587)
+..++|.|++||||||+.++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999999999987
No 325
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.20 E-value=0.0095 Score=61.97 Aligned_cols=27 Identities=30% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+++|+||+|||||+|.++++..+.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 568999999999999999999998774
No 326
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.14 E-value=0.13 Score=55.26 Aligned_cols=28 Identities=11% Similarity=-0.094 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++|..+.|.|++|+|||||+.-|+...
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999998887654
No 327
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.12 E-value=0.01 Score=58.86 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+.+.|+||+|||||||.+.|++.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3688999999999999999987654
No 328
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.10 E-value=0.011 Score=62.15 Aligned_cols=43 Identities=2% Similarity=0.037 Sum_probs=28.1
Q ss_pred Hhc-cCEEEEcCCCCCCcCChhhHhhhhhhHhhhhccceeEEEeeCC
Q 007851 452 AHN-YHTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS 497 (587)
Q Consensus 452 a~~-f~ti~i~~VP~l~~~~~n~arRFItLID~lYe~~~kL~~sa~~ 497 (587)
+.. -.++++|++- +.-+...+..+..+|..+-+. ..++|++..
T Consensus 302 ~~~~~~~lllDEp~--~~LD~~~~~~l~~~l~~~~~~-~~vi~~th~ 345 (371)
T 3auy_A 302 IGNRVECIILDEPT--VYLDENRRAKLAEIFRKVKSI-PQMIIITHH 345 (371)
T ss_dssp HSSCCSEEEEESTT--TTCCHHHHHHHHHHHHHCCSC-SEEEEEESC
T ss_pred hcCCCCeEEEeCCC--CcCCHHHHHHHHHHHHHhccC-CeEEEEECh
Confidence 456 7889998763 334567777888888876433 346665544
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.10 E-value=0.011 Score=54.71 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+.+.|.|++||||||+.+.|+..+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999987664
No 330
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.09 E-value=0.015 Score=54.90 Aligned_cols=27 Identities=15% Similarity=0.263 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..+..+.|.|+.||||||+.+.|+..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998665
No 331
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=95.08 E-value=0.0096 Score=64.23 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|.++.|+||+|||||||.++++..+.
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 578999999999999999999998775
No 332
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.07 E-value=0.014 Score=55.20 Aligned_cols=26 Identities=19% Similarity=0.086 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|..++|.|+.||||||+.+.|+..+
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46889999999999999999998654
No 333
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.05 E-value=0.015 Score=54.99 Aligned_cols=28 Identities=18% Similarity=0.138 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..|..+.|.|++||||||+.+.|+..+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3567899999999999999999987653
No 334
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.01 E-value=0.013 Score=55.31 Aligned_cols=26 Identities=19% Similarity=0.064 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|..++|.|+.||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999998654
No 335
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.01 E-value=0.012 Score=54.85 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+..++|.|++||||||+.+.|+..+.
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 57899999999999999999987653
No 336
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=95.00 E-value=0.061 Score=56.77 Aligned_cols=55 Identities=24% Similarity=0.264 Sum_probs=40.7
Q ss_pred ccEEEEeCCCCCCHHHHHHHHHHHHHHH-h---------CCcEEEEecCCCccccccCCchhHHh
Q 007851 291 ASILCFDEIQTVDVFAIVALSGIVSRLL-S---------TGTVLVATSNRAPWDLNQDGMQREIF 345 (587)
Q Consensus 291 p~LL~LDEPt~lD~~~a~~L~~Ll~~L~-~---------~G~vvV~TSn~~PedLy~~gl~r~~F 345 (587)
.-.|+|||...++...+..|.++++.-. . -.+.||++||..++++...|.-|+.+
T Consensus 232 ~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl 296 (387)
T 1ny5_A 232 GGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDL 296 (387)
T ss_dssp TSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHH
Confidence 4589999999999998888888887621 1 13458999999888877666555443
No 337
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.00 E-value=0.032 Score=69.17 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=52.5
Q ss_pred CCeEEEeHHH-----------------hhCCCCChhhHHHHHh------ccCEEEEcCCCCCCcCC-hh----------h
Q 007851 428 NGVARFTFEY-----------------LCGRPVGAADYIAVAH------NYHTVFITNIPVMSMRI-RD----------K 473 (587)
Q Consensus 428 ~~va~f~F~e-----------------LC~~plg~aDYl~la~------~f~ti~i~~VP~l~~~~-~n----------~ 473 (587)
+.+|+++|++ ||.+|-.--+-|++++ ..+.|+||-|.-|.... -+ +
T Consensus 1460 ~~~~~i~~e~~~~~~~~~~~Gv~~~~l~~~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~al~~~~e~~~~~~~~~~~~~ 1539 (1706)
T 3cmw_A 1460 KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 1539 (1706)
T ss_dssp CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCTTTTC-------CCHH
T ss_pred CeEEEEecCCCCCHHHHHHcCCCHHHeEEeCCCcHHHHHHHHHHHHHcCCCCEEEEccHHhCCccccccccccccchhHH
Confidence 4578899963 4556766666677765 57899999998887642 23 5
Q ss_pred Hhhh----hhhHhhhhccceeEEEeeCCC--hhhhccC
Q 007851 474 ARRF----ITLIDELYNHHCCLFCSAASS--IDDLFQG 505 (587)
Q Consensus 474 arRF----ItLID~lYe~~~kL~~sa~~~--~~~Lf~~ 505 (587)
||.+ .-|.+.+-..+|-+++..... +.-.|..
T Consensus 1540 ar~m~~~lr~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ 1577 (1706)
T 3cmw_A 1540 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGN 1577 (1706)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEECBC--------C
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEeeccccccceecCC
Confidence 6665 667899999999999887653 3344543
No 338
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.99 E-value=0.037 Score=59.61 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.|.|+.|+||||++..+...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~ 70 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALI 70 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 899999999999999999887653
No 339
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.98 E-value=0.013 Score=55.26 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.+.|.|++|||||||++.+.+.+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 36899999999999999999988754
No 340
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.91 E-value=0.012 Score=58.21 Aligned_cols=27 Identities=19% Similarity=0.170 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|..++|.||+||||||+.++|+..+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999999999987653
No 341
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.90 E-value=0.014 Score=54.00 Aligned_cols=26 Identities=23% Similarity=0.346 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998755
No 342
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.84 E-value=0.014 Score=56.20 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..+.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356899999999999999999987653
No 343
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.82 E-value=0.0067 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.|.|++|||||||++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999988764
No 344
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=94.79 E-value=0.0092 Score=64.02 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+|+|||||||||++|++..
T Consensus 156 ~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 156 LIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp CSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 45679999999999999999999874
No 345
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.77 E-value=0.18 Score=54.43 Aligned_cols=27 Identities=30% Similarity=0.322 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+|..+.+.|++|+||||++..++..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987664
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.73 E-value=0.016 Score=55.95 Aligned_cols=27 Identities=22% Similarity=0.169 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..+.|.|++||||||+.+.|+..+.
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999987653
No 347
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.70 E-value=0.018 Score=55.27 Aligned_cols=27 Identities=19% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|..+.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999987653
No 348
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=94.64 E-value=0.015 Score=62.80 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
++.++.|+||+|||||||.++++..+..
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~ 76 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA 76 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4688999999999999999999998763
No 349
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=94.63 E-value=0.014 Score=56.83 Aligned_cols=26 Identities=19% Similarity=0.248 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..++.|+||+|+||||+..+++..+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988764
No 350
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.62 E-value=0.016 Score=59.09 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..++|+|++|+|||||++.|.|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 47999999999999999999985
No 351
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.62 E-value=0.016 Score=52.96 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+.++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999987653
No 352
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.57 E-value=0.023 Score=57.27 Aligned_cols=25 Identities=28% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHh
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g 198 (587)
..+..|+|.|++||||||+.+.|..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3467899999999999999999983
No 353
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.52 E-value=0.017 Score=53.62 Aligned_cols=25 Identities=28% Similarity=0.222 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987653
No 354
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.47 E-value=0.016 Score=59.18 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
++++-.|+|+|.+|+|||||++.|.|.
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 345567999999999999999999984
No 355
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=94.47 E-value=0.021 Score=52.23 Aligned_cols=26 Identities=35% Similarity=0.332 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
-+.++|.|+.||||||+.+.|+..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999987653
No 356
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.46 E-value=0.018 Score=54.85 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=20.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976553
No 357
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.46 E-value=0.021 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.148 Sum_probs=21.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
No 358
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.43 E-value=0.018 Score=59.71 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..++|+|++|+|||||++.+++.+.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~ 81 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLI 81 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 568899999999999999999998764
No 359
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.43 E-value=0.026 Score=55.19 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..++.+.|+||+||||||..+.|+..+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998765
No 360
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=94.41 E-value=0.019 Score=55.82 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.-.|.|+|++|+|||||++.|.|...
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHcCCCc
Confidence 45799999999999999999998654
No 361
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.41 E-value=0.021 Score=53.23 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.|.|+.||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.35 E-value=0.024 Score=55.78 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.|..+.|.||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 46889999999999999999998654
No 363
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=94.34 E-value=0.019 Score=57.21 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..++|+|++|||||||++.|.|..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 364
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=94.33 E-value=0.02 Score=54.60 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999986653
No 365
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.24 E-value=0.024 Score=52.51 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998755
No 366
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=94.22 E-value=0.011 Score=60.37 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=22.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+++|+||+|+|||+|++.++..+.
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCc
Confidence 4599999999999999999998764
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.21 E-value=0.023 Score=53.44 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
...+.|.|++|||||||+..+...+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhH
Confidence 46899999999999999999987664
No 368
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.21 E-value=0.024 Score=50.69 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 369
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.19 E-value=0.024 Score=50.23 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.++|+.|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 370
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.17 E-value=0.011 Score=64.72 Aligned_cols=45 Identities=7% Similarity=0.001 Sum_probs=29.9
Q ss_pred HHHhcc--CEEEEcCCCCCCcCChhhHhhhhhhHhhhhccceeEEEeeCC
Q 007851 450 AVAHNY--HTVFITNIPVMSMRIRDKARRFITLIDELYNHHCCLFCSAAS 497 (587)
Q Consensus 450 ~la~~f--~ti~i~~VP~l~~~~~n~arRFItLID~lYe~~~kL~~sa~~ 497 (587)
+|+..- .++++|.. .-+. +...+.++..+|..+-+ ++.++|....
T Consensus 411 ~l~~~~~~~~lilDEp-~~gl-d~~~~~~i~~~l~~~~~-~~~vi~itH~ 457 (517)
T 4ad8_A 411 STVLGADTPSVVFDEV-DAGI-GGAAAIAVAEQLSRLAD-TRQVLVVTHL 457 (517)
T ss_dssp HHHHCCCSSEEEECSC-SSSC-CTHHHHHHHHHHHHHHH-HSEEEEECCC
T ss_pred HHHhCCCCCEEEEeCC-cCCC-CHHHHHHHHHHHHHHhC-CCEEEEEecC
Confidence 455566 77777654 3333 45678889999998877 5666665554
No 371
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.031 Score=51.67 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.|+|+.|+|||||++.+.+..
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998764
No 372
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.14 E-value=0.024 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.619 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|++|+|||||++.|.+.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46899999999999999999864
No 373
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.12 E-value=0.026 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=20.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999998754
No 374
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.11 E-value=0.028 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=20.6
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.++|+.|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998753
No 375
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.10 E-value=0.028 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+..+.|.|++||||||+.+.++..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999998764
No 376
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.09 E-value=0.027 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=21.2
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987553
No 377
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.07 E-value=0.026 Score=50.47 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.++|+.|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 378
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=94.07 E-value=0.036 Score=50.20 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+..+.|+|+.|+|||||++.|.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999864
No 379
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.06 E-value=0.022 Score=59.82 Aligned_cols=25 Identities=24% Similarity=0.379 Sum_probs=22.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
..++|+|++|||||||.+++++.+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4599999999999999999998763
No 380
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.06 E-value=0.026 Score=50.14 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.++|+.|+|||||++.+.+.
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 381
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.97 E-value=0.028 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
-.+.++|+.|+|||||++.+.+..
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998754
No 382
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.94 E-value=0.029 Score=50.11 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.++|+.|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 383
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.94 E-value=0.25 Score=64.10 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
...|..+.||.|+|||++.+.++..+.
T Consensus 644 ~~~~~~l~GpaGtGKTe~vk~LA~~lg 670 (2695)
T 4akg_A 644 QKYGGCFFGPAGTGKTETVKAFGQNLG 670 (2695)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred hCCCCcccCCCCCCcHHHHHHHHHHhC
Confidence 467899999999999999999998875
No 384
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.92 E-value=0.023 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.587 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.|+|+.|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 58999999999999999997643
No 385
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.92 E-value=0.028 Score=51.87 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..-.+.|+|++|+|||||++.+.+.
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999865
No 386
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.92 E-value=0.032 Score=54.88 Aligned_cols=27 Identities=19% Similarity=0.162 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..|+|.|++||||||+.+.|+..+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 457899999999999999999987553
No 387
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.91 E-value=0.035 Score=50.22 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.|.+.
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999875
No 388
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.90 E-value=0.029 Score=50.19 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 389
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.89 E-value=0.03 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.|+|+.|+|||||++.+.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 390
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.88 E-value=0.03 Score=50.65 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 391
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.87 E-value=0.035 Score=53.88 Aligned_cols=27 Identities=19% Similarity=0.070 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..+.|.|+.||||||+.+.|+..+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 457899999999999999999987653
No 392
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.87 E-value=0.03 Score=50.16 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.++|+.|+|||||++.+.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 393
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.84 E-value=0.031 Score=50.61 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.|+|+.|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 3569999999999999999987643
No 394
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=93.83 E-value=0.038 Score=50.71 Aligned_cols=25 Identities=16% Similarity=0.381 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
...+.|+|+.|+|||||++.|.+.-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHcCc
Confidence 3478999999999999999998753
No 395
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.81 E-value=0.038 Score=50.99 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..-.+.|+|+.|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999865
No 396
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.80 E-value=0.13 Score=53.60 Aligned_cols=27 Identities=19% Similarity=0.033 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+|+.+.|.|++|+|||||+.-|+..+
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998887654
No 397
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.76 E-value=0.031 Score=50.19 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.|+|+.|+|||||++.|.+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4789999999999999999754
No 398
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=93.72 E-value=0.028 Score=60.22 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+-.++|+|++|+|||||++.|.|..
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred CceEEEECCCCCCHHHHHHHHhCCc
Confidence 4579999999999999999999864
No 399
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.71 E-value=0.033 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.343 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 400
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.65 E-value=0.034 Score=50.83 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.++|+|+.|+|||||++.|.+.
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 401
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.64 E-value=0.036 Score=55.65 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
|..+.|.|++||||||+.+.|+..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 367899999999999999999864
No 402
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=93.61 E-value=0.029 Score=50.79 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 403
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=93.59 E-value=0.036 Score=50.91 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.++|+|+.|+|||||++.|.+.
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 404
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.53 E-value=0.036 Score=51.25 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.++|+|+.|+|||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 405
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.50 E-value=0.031 Score=51.72 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
....|.|+|+.|+|||||++.|.+.
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999999764
No 406
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.47 E-value=0.039 Score=49.21 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=19.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.|+|+.|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999753
No 407
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.46 E-value=0.039 Score=50.35 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999864
No 408
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=93.46 E-value=0.034 Score=50.95 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=19.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999999875
No 409
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.45 E-value=0.04 Score=49.82 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 410
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.44 E-value=0.039 Score=49.80 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 411
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.41 E-value=0.035 Score=55.80 Aligned_cols=23 Identities=39% Similarity=0.592 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.++|+|++|+|||||++.|.|.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999985
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=93.38 E-value=0.041 Score=49.66 Aligned_cols=24 Identities=25% Similarity=0.467 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
-.+.|+|+.|+|||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 469999999999999999998643
No 413
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.38 E-value=0.039 Score=51.43 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g 198 (587)
-.+.|+|++|+|||||++.+.+
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4789999999999999999987
No 414
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=93.38 E-value=0.043 Score=52.61 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+..+.|.|+.||||||+.+.|+..+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999998765
No 415
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=93.37 E-value=0.041 Score=52.47 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
...++|.|+.||||||+.+.|...+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999998753
No 416
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.35 E-value=0.042 Score=53.10 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998655
No 417
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.34 E-value=0.028 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g 198 (587)
-.+.|+|++|+|||||++.+.+
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999975
No 418
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.34 E-value=0.038 Score=52.74 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+.|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998755
No 419
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.33 E-value=0.042 Score=49.96 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.|.|+|+.|+|||||++.|.+.
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 356999999999999999999864
No 420
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.33 E-value=0.044 Score=51.99 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHh
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g 198 (587)
.+.|+.|.|++|+|||||.-.+..
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 479999999999999999988754
No 421
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=93.31 E-value=0.031 Score=58.58 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhcc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l 200 (587)
.++|+|++|+|||||++.|++..
T Consensus 39 ~I~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 39 TLMVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp CEEECCCTTSCHHHHHHHHTTCC
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 47999999999999999998753
No 422
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.31 E-value=0.052 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.+.+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999763
No 423
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=93.30 E-value=0.046 Score=50.16 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=22.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
-.+.|+|+.|+|||||++.+.+...
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhcc
Confidence 4689999999999999999988654
No 424
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=93.30 E-value=0.036 Score=58.22 Aligned_cols=25 Identities=32% Similarity=0.469 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhccC
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
+.+.|+|++|+|||||++.+.|...
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC--
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCc
Confidence 4599999999999999999998653
No 425
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.29 E-value=0.031 Score=51.00 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHh
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g 198 (587)
..-.+.|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999999874
No 426
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.28 E-value=0.036 Score=59.55 Aligned_cols=28 Identities=29% Similarity=0.246 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccCC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATEG 202 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~~ 202 (587)
+|+.+.++|++|+||||++..+++.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999998864
No 427
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.27 E-value=0.042 Score=50.20 Aligned_cols=23 Identities=30% Similarity=0.566 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 428
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.25 E-value=0.043 Score=50.50 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.++|+.|+|||||++.|.+.
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.21 E-value=0.046 Score=49.56 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.+.+.
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 430
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.19 E-value=0.075 Score=54.37 Aligned_cols=41 Identities=12% Similarity=0.061 Sum_probs=27.3
Q ss_pred CCccEEEEeCCCCCCHHHHHHHHHHHHHHHhCCcEEEEecCC
Q 007851 289 RGASILCFDEIQTVDVFAIVALSGIVSRLLSTGTVLVATSNR 330 (587)
Q Consensus 289 ~~p~LL~LDEPt~lD~~~a~~L~~Ll~~L~~~G~vvV~TSn~ 330 (587)
.+.+|+++||...+....+..|...+++-- ..+++|++++.
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LEep~-~~t~fIl~t~~ 121 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALEEPP-EYAVIVLNTRR 121 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHHSCC-TTEEEEEEESC
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHhCCC-CCeEEEEEECC
Confidence 357899999999987777666665555321 24566666654
No 431
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.18 E-value=0.046 Score=49.60 Aligned_cols=23 Identities=39% Similarity=0.575 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 432
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=93.18 E-value=0.15 Score=52.90 Aligned_cols=22 Identities=23% Similarity=-0.032 Sum_probs=17.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHH
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFY 197 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~ 197 (587)
+| .+.|+||+|+|||||+--++
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHH
T ss_pred CC-eEEEECCCCCCHHHHHHHHH
Confidence 45 78899999999999955444
No 433
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.13 E-value=0.054 Score=56.13 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
++.+.|+||+|||||||...++..+.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999998764
No 434
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=93.12 E-value=0.046 Score=50.33 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|++|+|||||++.+.+.
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 435
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.09 E-value=0.058 Score=50.95 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.|+|+.|+|||||++.|.+..
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998754
No 436
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.07 E-value=0.048 Score=50.35 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.++|+|+.|+|||||++.|.+.
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 437
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=93.05 E-value=0.054 Score=57.66 Aligned_cols=27 Identities=19% Similarity=0.153 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..|+.++|+||+|||||||+.+|+..+
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 468999999999999999999998765
No 438
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=93.03 E-value=0.048 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.|.|+|+.|+|||||++.|.+.
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 439
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=93.00 E-value=0.049 Score=50.57 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
-.++|+|+.|+|||||++.|.+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHCC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 469999999999999999998643
No 440
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.00 E-value=0.05 Score=49.49 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999998853
No 441
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=92.96 E-value=0.063 Score=57.22 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 174 PAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 174 ~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..+..|.|+|++||||||+.+.++..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 457889999999999999999997654
No 442
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.96 E-value=0.051 Score=50.41 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|++|+|||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999876653
No 443
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.95 E-value=0.051 Score=50.63 Aligned_cols=25 Identities=28% Similarity=0.485 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.|+|+.|+|||||++.|.+..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998753
No 444
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.93 E-value=0.061 Score=49.06 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 445
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=92.92 E-value=0.06 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.505 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
|..+.|.|+.||||||+++.|+..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 57899999999999999999997764
No 446
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.88 E-value=0.05 Score=52.71 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.++++.|.||+|+|||||...++..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999999988754
No 447
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.88 E-value=0.052 Score=49.99 Aligned_cols=23 Identities=35% Similarity=0.470 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 448
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.84 E-value=0.052 Score=51.70 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
|..++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3579999999999999999998765
No 449
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.83 E-value=0.054 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.383 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.|.+.
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 357999999999999999999863
No 450
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.81 E-value=0.054 Score=50.69 Aligned_cols=23 Identities=35% Similarity=0.619 Sum_probs=20.5
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|++|+|||||++.|.+.
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 451
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.79 E-value=0.056 Score=49.06 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 452
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.76 E-value=0.056 Score=53.72 Aligned_cols=22 Identities=36% Similarity=0.478 Sum_probs=20.5
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+.|+|.+|||||||++.|.|.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999886
No 453
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=92.75 E-value=0.07 Score=51.17 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..-.|.|+|+.|+|||||++.|.+.
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999764
No 454
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.74 E-value=0.74 Score=49.92 Aligned_cols=28 Identities=4% Similarity=-0.124 Sum_probs=23.0
Q ss_pred CCCCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 173 PPAPKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 173 ~~~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..+|+.+.|.|++|+|||||+--|+-.+
T Consensus 239 l~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 3578999999999999999987766443
No 455
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=92.74 E-value=0.055 Score=50.41 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 456
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.74 E-value=0.057 Score=49.78 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999753
No 457
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.73 E-value=0.056 Score=50.06 Aligned_cols=24 Identities=29% Similarity=0.351 Sum_probs=21.2
Q ss_pred cEEEEEcCCCChHHHHHHHHHhcc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~l 200 (587)
-.++|+|+.|+|||||++.|.+..
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 469999999999999999998754
No 458
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=92.71 E-value=0.032 Score=56.64 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=19.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
+..++|.||+||||||+.+.|...+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 459
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=92.71 E-value=0.055 Score=49.64 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.|.+.
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999864
No 460
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.67 E-value=0.045 Score=50.92 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=19.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC-
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999754
No 461
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=92.64 E-value=0.053 Score=49.69 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.++|+.|+|||||++.+.+..
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4679999999999999999998643
No 462
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.63 E-value=0.059 Score=49.81 Aligned_cols=23 Identities=30% Similarity=0.319 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.|.|+|+.|+|||||++.|.+.
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999864
No 463
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.63 E-value=0.058 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.|+|+.|+|||||++.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3569999999999999999998743
No 464
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=92.63 E-value=0.059 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 465
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.61 E-value=0.06 Score=49.02 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=20.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHh
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYG 198 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g 198 (587)
-.+.|+|+.|+|||||++.|.+
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4689999999999999999984
No 466
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=92.57 E-value=0.048 Score=51.63 Aligned_cols=25 Identities=12% Similarity=0.319 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
...|.|+|+.|+|||||++.|.+.-
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 4579999999999999999998753
No 467
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=92.53 E-value=0.059 Score=53.06 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.|.|+|.+|+|||||++.|.|.-
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999998854
No 468
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=92.50 E-value=0.061 Score=50.31 Aligned_cols=23 Identities=39% Similarity=0.498 Sum_probs=20.7
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
No 469
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=92.49 E-value=0.2 Score=52.53 Aligned_cols=54 Identities=17% Similarity=0.169 Sum_probs=39.8
Q ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHHH-h-C--------CcEEEEecCCCccccccCCchhHHh
Q 007851 292 SILCFDEIQTVDVFAIVALSGIVSRLL-S-T--------GTVLVATSNRAPWDLNQDGMQREIF 345 (587)
Q Consensus 292 ~LL~LDEPt~lD~~~a~~L~~Ll~~L~-~-~--------G~vvV~TSn~~PedLy~~gl~r~~F 345 (587)
-.|+|||...++...+..|.++++.-. . - .+-+|++||..+..+...|.-|+.+
T Consensus 224 gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL 287 (368)
T 3dzd_A 224 GTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDL 287 (368)
T ss_dssp SEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHH
T ss_pred CeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHH
Confidence 579999999999999888888886531 0 0 2348899998888777766655443
No 470
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.49 E-value=0.064 Score=49.83 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.+.+.
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 471
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.49 E-value=0.063 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.|+|+|+.|+|||||++.|.+.
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 472
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.48 E-value=0.062 Score=49.45 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.+.+.
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999853
No 473
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=92.46 E-value=0.064 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 474
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.46 E-value=0.065 Score=49.21 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.8
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 475
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=92.43 E-value=0.043 Score=51.47 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|++|+|||||++.|.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEEECCCCCCHHHHHHHHHhc
Confidence 46899999999999999999653
No 476
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.42 E-value=0.065 Score=50.02 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..-.+.|+|+.|+|||||++.+.+..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34679999999999999999998653
No 477
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.42 E-value=0.063 Score=50.79 Aligned_cols=23 Identities=39% Similarity=0.527 Sum_probs=20.4
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|++|+|||||++.|.+.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999988754
No 478
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.40 E-value=0.063 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.9
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.++|+|++|+|||||++.|.|.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g~ 28 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTGT 28 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 46899999999999999999874
No 479
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.39 E-value=0.052 Score=49.30 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 480
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=92.38 E-value=0.061 Score=50.40 Aligned_cols=23 Identities=26% Similarity=0.525 Sum_probs=20.1
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.|.|+|+.|+|||||++.|.+.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC-
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999753
No 481
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=92.35 E-value=0.075 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
..-.|+|+|++|+|||||++.|.+.-
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCC
Confidence 34679999999999999999998743
No 482
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.30 E-value=0.071 Score=49.41 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.3
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.|.|+|+.|+|||||++.+.+.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 46999999999999999888764
No 483
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.29 E-value=0.08 Score=50.17 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
...+.|+|+.|+|||||++.|.+..
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999988764
No 484
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.29 E-value=0.062 Score=55.89 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.+..++|+|++|+|||||++.+.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 45689999999999999999998754
No 485
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=92.27 E-value=0.059 Score=55.98 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.9
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.|.|+|++|||||||++.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999993
No 486
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.25 E-value=0.046 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
|+.+.++|++|+||||++..+++.+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999998875
No 487
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=92.24 E-value=0.066 Score=56.97 Aligned_cols=25 Identities=12% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.+..++|+|++|+|||||+++|.+.
T Consensus 21 ~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp SCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4567999999999999999999986
No 488
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=92.21 E-value=0.049 Score=50.28 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhcc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGAT 200 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~l 200 (587)
.-.+.|+|+.|+|||||++.|.+..
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 21 EVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3569999999999999999998654
No 489
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.17 E-value=0.07 Score=50.37 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.6
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.|.|+|+.|+|||||++.|.+.
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 490
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.16 E-value=0.071 Score=50.54 Aligned_cols=23 Identities=26% Similarity=0.424 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.|.+.
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 56999999999999999999875
No 491
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.073 Score=50.09 Aligned_cols=23 Identities=35% Similarity=0.457 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.+.|+|+.|+|||||++.+.+.
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 57999999999999999999874
No 492
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.14 E-value=0.071 Score=55.94 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
....+.|+|++|+|||||++.+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~ 60 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY 60 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH
Confidence 356789999999999999999987654
No 493
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=92.13 E-value=0.077 Score=51.20 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhccC
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+.|+||+||||+|..+.|+....
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 478999999999999999987653
No 494
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=92.09 E-value=0.071 Score=53.37 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=21.0
Q ss_pred cEEEEEcCCCChHHHHHHHHHhc
Q 007851 177 KGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 177 kglyL~GpnGsGKTTLm~l~~g~ 199 (587)
-.++|+|.+|||||||++.|.|.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999875
No 495
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=92.02 E-value=0.056 Score=53.42 Aligned_cols=27 Identities=22% Similarity=0.431 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.+..|+|.|+.||||||+.+.|+..+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 468899999999999999999987764
No 496
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=92.02 E-value=0.098 Score=53.98 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.|+.+.|.||+|||||||...++...+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC
Confidence 467899999999999999999987664
No 497
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.96 E-value=0.099 Score=54.49 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhccC
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGATE 201 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~l~ 201 (587)
.++.+.|+||.|||||||...|+..+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 457899999999999999999997764
No 498
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.96 E-value=0.079 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.405 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCChHHHHHHHHHhc
Q 007851 176 PKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 176 pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
.-.+.|+|+.|+|||||++.|.+.
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999864
No 499
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.94 E-value=0.087 Score=48.95 Aligned_cols=25 Identities=24% Similarity=0.193 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCChHHHHHHHHHhc
Q 007851 175 APKGLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 175 ~pkglyL~GpnGsGKTTLm~l~~g~ 199 (587)
..-.+.|+|+.|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457999999999999999998753
No 500
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=91.93 E-value=0.064 Score=53.49 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHHhc
Q 007851 178 GLYLYGNVGSGKTMLMDMFYGA 199 (587)
Q Consensus 178 glyL~GpnGsGKTTLm~l~~g~ 199 (587)
.|.|+|.+|+|||||++.+++.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999998764
Done!