BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007852
(587 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VE65|TAF12_MOUSE Transcription initiation factor TFIID subunit 12 OS=Mus musculus
GN=Taf12 PE=1 SV=1
Length = 161
Score = 129 bits (324), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 62/129 (48%), Positives = 90/129 (69%), Gaps = 3/129 (2%)
Query: 404 GSQPDATVSGTT--TPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEI 461
GS ++T G TPG E NQ+L K+K+QDLV +VD ++D +VE++LL+I
Sbjct: 29 GSMANSTTVGKIAGTPGTGGRLSPE-NNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQI 87
Query: 462 ADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSSDV 521
ADDFI+SV + AC LA+HRKSSTLE KD+ LHLE+ W++ +PGF SEE +K+ +++
Sbjct: 88 ADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEA 147
Query: 522 HSKRLEMIR 530
H +R+ +IR
Sbjct: 148 HKQRMALIR 156
>sp|Q16514|TAF12_HUMAN Transcription initiation factor TFIID subunit 12 OS=Homo sapiens
GN=TAF12 PE=1 SV=1
Length = 161
Score = 129 bits (323), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 60/122 (49%), Positives = 86/122 (70%), Gaps = 1/122 (0%)
Query: 409 ATVSGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDS 468
A V TPG E NQ+L K+K+QDLV +VD ++D +VE++LL+IADDFI+S
Sbjct: 36 AVVKIPGTPGAGGRLSPE-NNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIES 94
Query: 469 VTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSSDVHSKRLEM 528
V + AC LA+HRKSSTLE KD+ LHLE+ W++ +PGF SEE +K+ +++ H +R+ +
Sbjct: 95 VVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMAL 154
Query: 529 IR 530
IR
Sbjct: 155 IR 156
>sp|Q3T174|TAF12_BOVIN Transcription initiation factor TFIID subunit 12 OS=Bos taurus
GN=TAF12 PE=2 SV=1
Length = 161
Score = 128 bits (321), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 89/130 (68%), Gaps = 3/130 (2%)
Query: 401 SLTGSQPDATVSGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLE 460
S+ S + GT GG S NQ+L K+K+QDLV +VD ++D +VE++LL+
Sbjct: 30 SMANSTAVVKIPGTPGTGGRLSP---ENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQ 86
Query: 461 IADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSSD 520
IADDFI+SV + AC LA+HRKSSTLE KD+ LHLE+ W++ +PGF SEE +K+ +++
Sbjct: 87 IADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTE 146
Query: 521 VHSKRLEMIR 530
H +R+ +IR
Sbjct: 147 AHKQRMALIR 156
>sp|Q91858|TAF12_XENLA Transcription initiation factor TFIID subunit 12 OS=Xenopus laevis
GN=taf12 PE=2 SV=1
Length = 164
Score = 125 bits (315), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 61/130 (46%), Positives = 91/130 (70%), Gaps = 3/130 (2%)
Query: 401 SLTGSQPDATVSGTTTPGGSSSQGTEATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLE 460
++ S P V T GG +S EA NQ+L K+K+ DLV +VD ++D +VE++LL+
Sbjct: 33 AMANSTPVGKVPVPTAGGGRAS--PEA-NQVLSKKKLHDLVREVDPNEQLDEDVEEMLLQ 89
Query: 461 IADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSSD 520
IADDFI+SV S AC LA+HRKS+TLE KD+ LHLE+ W++ +PGF SEE +K+ +++
Sbjct: 90 IADDFIESVVSAACQLARHRKSNTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTE 149
Query: 521 VHSKRLEMIR 530
H +R+ +I+
Sbjct: 150 AHKQRMALIK 159
>sp|Q03761|TAF12_YEAST Transcription initiation factor TFIID subunit 12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TAF12 PE=1
SV=1
Length = 539
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 78/107 (72%), Gaps = 5/107 (4%)
Query: 428 TNQLLGKRKIQDLVSQV-----DSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKS 482
T +++ KRK+++LV V D + +D +VE+LLL++ADDF+ +VT+F+C LAKHRKS
Sbjct: 411 TQRVMSKRKLRELVKTVGIDEGDGETVIDGDVEELLLDLADDFVTNVTAFSCRLAKHRKS 470
Query: 483 STLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSSDVHSKRLEMI 529
LE++DI LHLE+NW++ +PG+S++E RK S ++++L+ I
Sbjct: 471 DNLEARDIQLHLERNWNIRIPGYSADEIRSTRKWNPSQNYNQKLQSI 517
>sp|O13722|TAF12_SCHPO Transcription initiation factor TFIID subunit 12
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=taf12 PE=1 SV=1
Length = 450
Score = 107 bits (266), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 59/111 (53%), Positives = 86/111 (77%), Gaps = 3/111 (2%)
Query: 401 SLTGSQPDATVSGTTTPGGSSSQGTEATN--QLLGKRKIQDLVSQVDSQGKVDPEVEDLL 458
+LTG ++ G +TPG S + E N +LL KRK+ DL+ Q+DS+ K++PEVE+LL
Sbjct: 311 TLTGGYASGSI-GLSTPGLSRAPHYELDNGNRLLSKRKLHDLLQQIDSEEKIEPEVEELL 369
Query: 459 LEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEE 509
LEIAD+F++SVT+FAC LAKHRKS TL+ +D+ LHLE+NW++ +PGF+S++
Sbjct: 370 LEIADEFVESVTNFACRLAKHRKSDTLDVRDVQLHLERNWNIRLPGFASDD 420
>sp|Q555L9|TAF12_DICDI Transcription initiation factor TFIID subunit 12 OS=Dictyostelium
discoideum GN=TAF12 PE=3 SV=2
Length = 627
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 60/80 (75%)
Query: 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKD 489
++LGKRK+ +L+ Q+ K+D + ED+L +ADDF++S +FAC LAKHR S+TLE KD
Sbjct: 440 EVLGKRKLIELLQQISPNEKMDEDAEDILSVLADDFVESTVAFACTLAKHRNSTTLEVKD 499
Query: 490 ILLHLEKNWHLTVPGFSSEE 509
+ HLEKNW++ VPGF + E
Sbjct: 500 LQCHLEKNWNIRVPGFGNVE 519
>sp|P49905|TAF12_DROME Transcription initiation factor TFIID subunit 12 OS=Drosophila
melanogaster GN=Taf12 PE=1 SV=1
Length = 196
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 81/135 (60%), Gaps = 11/135 (8%)
Query: 411 VSGTTTPGGSSSQGTEATNQ-----------LLGKRKIQDLVSQVDSQGKVDPEVEDLLL 459
VSG T G S G++++N +L K ++ +LV +VD+ ++D +VE+LLL
Sbjct: 60 VSGLGTGTGPISGGSKSSNHTSSAAGSENTPMLTKPRLTELVREVDTTTQLDEDVEELLL 119
Query: 460 EIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSS 519
+I DDF++ AKHRKS+ +E +D+ LH E+ +++ +PGF ++E +++ +
Sbjct: 120 QIIDDFVEDTVKSTSAFAKHRKSNKIEVRDVQLHFERKYNMWIPGFGTDELRPYKRAAVT 179
Query: 520 DVHSKRLEMIRALME 534
+ H +RL +IR ++
Sbjct: 180 EAHKQRLALIRKTIK 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.307 0.120 0.329
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 206,030,516
Number of Sequences: 539616
Number of extensions: 8847763
Number of successful extensions: 197341
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1409
Number of HSP's successfully gapped in prelim test: 1305
Number of HSP's that attempted gapping in prelim test: 57751
Number of HSP's gapped (non-prelim): 41326
length of query: 587
length of database: 191,569,459
effective HSP length: 123
effective length of query: 464
effective length of database: 125,196,691
effective search space: 58091264624
effective search space used: 58091264624
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 64 (29.3 bits)