Query 007852
Match_columns 587
No_of_seqs 132 out of 191
Neff 2.6
Searched_HMMs 29240
Date Mon Mar 25 12:06:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007852.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007852hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h3o_B Transcription initiatio 100.0 3.3E-32 1.1E-36 225.9 8.8 75 428-502 2-76 (76)
2 2hue_C Histone H4; mini beta s 98.9 2.6E-09 8.8E-14 88.8 7.1 78 428-507 7-84 (84)
3 1id3_B Histone H4; nucleosome 98.8 5.7E-09 1.9E-13 90.1 7.5 78 428-507 25-102 (102)
4 1tzy_D Histone H4-VI; histone- 98.8 1.2E-08 4.2E-13 87.5 7.5 79 427-507 25-103 (103)
5 2yfw_B Histone H4, H4; cell cy 98.7 1.6E-08 5.4E-13 87.0 6.7 79 427-507 25-103 (103)
6 1ku5_A HPHA, archaeal histon; 98.6 6.1E-08 2.1E-12 77.5 7.0 65 430-495 5-69 (70)
7 1b67_A Protein (histone HMFA); 98.5 1.6E-07 5.4E-12 74.3 7.3 64 432-496 3-66 (68)
8 3b0c_W CENP-W, centromere prot 98.5 1.9E-07 6.5E-12 76.1 6.7 69 429-497 2-70 (76)
9 3b0c_T CENP-T, centromere prot 98.5 2.3E-07 7.8E-12 81.2 7.0 72 429-501 5-76 (111)
10 1n1j_A NF-YB; histone-like PAI 98.3 2.2E-06 7.4E-11 71.9 8.1 69 428-496 5-74 (93)
11 1taf_A TFIID TBP associated fa 98.2 3.5E-06 1.2E-10 68.8 8.0 62 435-497 5-66 (68)
12 2ly8_A Budding yeast chaperone 98.2 1.8E-06 6E-11 77.4 6.4 61 446-507 61-121 (121)
13 1f1e_A Histone fold protein; a 98.1 4.7E-06 1.6E-10 77.0 7.6 70 428-498 79-148 (154)
14 1jfi_B DR1 protein, transcript 98.1 8.5E-06 2.9E-10 77.0 8.1 71 426-496 10-80 (179)
15 3nqj_A Histone H3-like centrom 98.0 1.6E-05 5.3E-10 67.2 7.5 64 431-494 3-72 (82)
16 2l5a_A Histone H3-like centrom 98.0 1.3E-05 4.5E-10 78.6 7.8 74 432-507 154-235 (235)
17 2hue_B Histone H3; mini beta s 97.9 2.3E-05 7.8E-10 65.5 7.3 65 431-495 3-71 (77)
18 3r45_A Histone H3-like centrom 97.9 1.4E-05 4.9E-10 74.4 6.3 68 427-494 73-146 (156)
19 2yfv_A Histone H3-like centrom 97.9 2E-05 7E-10 68.5 6.5 68 427-494 23-97 (100)
20 3nqu_A Histone H3-like centrom 97.9 1.8E-05 6.2E-10 72.5 6.5 69 427-495 57-131 (140)
21 3b0b_B CENP-S, centromere prot 97.8 1.6E-05 5.3E-10 69.9 5.1 60 438-497 26-87 (107)
22 1f1e_A Histone fold protein; a 97.8 3.9E-05 1.3E-09 70.9 7.9 66 431-496 4-69 (154)
23 1tzy_C Histone H3; histone-fol 97.8 3.7E-05 1.3E-09 70.1 7.5 68 428-495 59-130 (136)
24 1taf_B TFIID TBP associated fa 97.8 8.5E-05 2.9E-09 61.0 8.3 66 429-495 4-69 (70)
25 3v9r_A MHF1, uncharacterized p 97.8 5.5E-05 1.9E-09 64.7 7.4 59 439-497 20-80 (90)
26 2byk_B Chrac-14; nucleosome sl 97.7 5.6E-05 1.9E-09 67.6 7.0 70 428-497 6-76 (128)
27 4dra_A Centromere protein S; D 97.5 0.00012 4E-09 65.2 5.8 52 447-498 45-96 (113)
28 1n1j_B NF-YC; histone-like PAI 97.4 0.00034 1.2E-08 59.4 7.5 74 428-501 16-89 (97)
29 3vh5_A CENP-S; histone fold, c 97.3 0.00024 8.2E-09 65.3 5.8 53 447-499 37-89 (140)
30 2nqb_D Histone H2B; nucleosome 97.3 0.00037 1.3E-08 62.9 6.6 66 435-504 37-102 (123)
31 1tzy_B Histone H2B; histone-fo 97.2 0.00052 1.8E-08 62.2 6.5 65 436-504 41-105 (126)
32 4g92_C HAPE; transcription fac 97.1 0.00094 3.2E-08 58.8 7.0 70 429-498 39-108 (119)
33 3b0b_C CENP-X, centromere prot 97.1 0.0014 4.8E-08 55.2 7.3 70 425-494 2-73 (81)
34 2jss_A Chimera of histone H2B. 97.0 0.0018 6.1E-08 60.9 8.1 64 434-497 6-69 (192)
35 2l5a_A Histone H3-like centrom 96.8 0.0041 1.4E-07 61.2 9.3 125 430-566 10-142 (235)
36 1jfi_A Transcription regulator 96.8 0.0017 5.8E-08 55.4 5.7 72 429-501 9-81 (98)
37 2f8n_G Core histone macro-H2A. 96.3 0.0087 3E-07 53.2 7.0 67 430-496 21-87 (120)
38 2nqb_C Histone H2A; nucleosome 96.3 0.0092 3.1E-07 53.2 7.2 67 430-496 22-88 (123)
39 4dra_E Centromere protein X; D 96.2 0.017 5.9E-07 49.1 7.9 66 429-494 10-77 (84)
40 1tzy_A Histone H2A-IV; histone 96.1 0.011 3.8E-07 53.1 7.1 67 430-496 24-90 (129)
41 1id3_C Histone H2A.1; nucleoso 96.1 0.0096 3.3E-07 53.7 6.6 67 430-496 24-90 (131)
42 2f8n_K Histone H2A type 1; nuc 96.1 0.011 3.8E-07 54.6 6.8 67 430-496 43-109 (149)
43 1f66_C Histone H2A.Z; nucleoso 95.6 0.022 7.6E-07 51.2 6.8 67 430-496 26-93 (128)
44 2byk_A Chrac-16; nucleosome sl 95.5 0.021 7.1E-07 52.0 6.0 74 428-501 16-90 (140)
45 2jss_A Chimera of histone H2B. 95.3 0.042 1.4E-06 51.7 7.8 67 430-496 104-171 (192)
46 1bh9_B TAFII28; histone fold, 95.2 0.073 2.5E-06 45.3 8.2 63 431-494 16-79 (89)
47 3uk6_A RUVB-like 2; hexameric 89.2 1.2 4.2E-05 42.2 8.4 67 432-498 259-331 (368)
48 3v9r_B MHF2, uncharacterized p 87.3 0.71 2.4E-05 39.9 4.9 60 431-490 1-69 (88)
49 1h3o_A Transcription initiatio 86.3 0.72 2.5E-05 38.6 4.3 49 434-483 9-57 (75)
50 2r44_A Uncharacterized protein 85.7 1.9 6.6E-05 40.6 7.5 73 429-502 207-302 (331)
51 2qby_A CDC6 homolog 1, cell di 83.7 4.2 0.00015 37.8 8.7 68 430-497 195-272 (386)
52 1g8p_A Magnesium-chelatase 38 81.9 3.6 0.00012 38.4 7.5 55 447-501 265-326 (350)
53 2v1u_A Cell division control p 80.6 2.3 7.9E-05 39.7 5.7 67 431-497 200-276 (387)
54 3aji_B S6C, proteasome (prosom 79.1 0.83 2.8E-05 36.1 1.9 52 457-513 27-82 (83)
55 1r6b_X CLPA protein; AAA+, N-t 74.6 14 0.00048 39.4 10.2 65 446-510 369-446 (758)
56 1fnn_A CDC6P, cell division co 74.1 6.1 0.00021 37.1 6.6 66 432-497 193-274 (389)
57 3vlf_B 26S protease regulatory 73.2 1.5 5.2E-05 35.6 2.0 48 456-507 26-77 (88)
58 3bos_A Putative DNA replicatio 73.2 7.2 0.00025 33.7 6.4 62 433-495 175-241 (242)
59 2qby_B CDC6 homolog 3, cell di 73.0 11 0.00039 35.5 8.2 65 431-497 196-270 (384)
60 3kw6_A 26S protease regulatory 73.0 1.7 5.8E-05 34.0 2.2 43 456-498 28-74 (78)
61 3nbx_X ATPase RAVA; AAA+ ATPas 69.4 13 0.00043 39.2 8.3 65 429-495 206-283 (500)
62 2ly8_A Budding yeast chaperone 69.2 7.9 0.00027 34.8 5.8 50 431-480 1-57 (121)
63 1lv7_A FTSH; alpha/beta domain 69.2 4.7 0.00016 36.6 4.5 64 433-496 183-251 (257)
64 3h4m_A Proteasome-activating n 69.0 5.6 0.00019 36.3 5.0 68 431-498 187-259 (285)
65 1fh1_A NODF, nodulation protei 68.4 2.5 8.4E-05 34.1 2.2 26 478-503 39-64 (92)
66 3k1j_A LON protease, ATP-depen 67.2 13 0.00045 39.1 7.9 51 446-496 311-374 (604)
67 2o1e_A YCDH; alpha-beta protei 66.4 4.1 0.00014 40.1 3.7 121 431-558 135-266 (312)
68 3pvs_A Replication-associated 66.2 10 0.00034 39.0 6.7 94 431-538 164-271 (447)
69 2prs_A High-affinity zinc upta 65.9 4.4 0.00015 38.9 3.8 121 431-558 119-250 (284)
70 1w5s_A Origin recognition comp 64.9 20 0.00067 34.1 8.0 69 430-498 213-294 (412)
71 2c9o_A RUVB-like 1; hexameric 63.0 15 0.00052 37.1 7.2 70 431-500 365-440 (456)
72 3cx3_A Lipoprotein; zinc-bindi 62.9 5.9 0.0002 38.1 4.0 121 431-558 122-253 (284)
73 3gi1_A LBP, laminin-binding pr 61.9 3.9 0.00013 39.7 2.6 120 432-558 125-255 (286)
74 1ixz_A ATP-dependent metallopr 59.2 5.9 0.0002 35.9 3.2 62 433-494 187-253 (254)
75 2qz4_A Paraplegin; AAA+, SPG7, 59.2 9.8 0.00034 34.0 4.6 66 432-497 177-249 (262)
76 2chg_A Replication factor C sm 57.8 15 0.00051 30.8 5.2 63 431-495 160-224 (226)
77 1elk_A Target of MYB1; superhe 57.0 22 0.00077 31.9 6.5 64 430-503 92-156 (157)
78 1x5b_A Signal transducing adap 57.0 25 0.00087 31.9 6.9 70 430-511 90-159 (163)
79 2i5u_A DNAD domain protein; st 55.8 43 0.0015 27.1 7.4 55 437-494 4-67 (83)
80 1pq4_A Periplasmic binding pro 55.5 6.6 0.00023 38.1 3.0 118 431-557 135-263 (291)
81 1iy2_A ATP-dependent metallopr 54.8 5.9 0.0002 36.7 2.4 62 433-494 211-277 (278)
82 1bh9_A TAFII18; histone fold, 54.6 40 0.0014 25.5 6.5 41 435-475 4-44 (45)
83 1hqc_A RUVB; extended AAA-ATPa 53.8 21 0.00072 33.0 6.0 67 430-496 166-237 (324)
84 2krk_A 26S protease regulatory 53.1 5 0.00017 32.7 1.5 42 456-497 36-81 (86)
85 3eie_A Vacuolar protein sortin 51.9 6.3 0.00022 37.6 2.2 60 432-491 184-249 (322)
86 1xvl_A Mn transporter, MNTC pr 51.4 13 0.00044 36.8 4.4 120 431-558 147-280 (321)
87 2lte_A Specialized acyl carrie 56.5 3.2 0.00011 34.9 0.0 27 479-505 54-80 (103)
88 3f8t_A Predicted ATPase involv 50.2 27 0.00091 37.8 6.8 67 429-495 391-481 (506)
89 1in4_A RUVB, holliday junction 50.2 28 0.00097 33.5 6.4 67 430-496 178-249 (334)
90 3ox6_A Calcium-binding protein 49.6 76 0.0026 25.0 7.9 29 471-499 91-119 (153)
91 3hh8_A Metal ABC transporter s 49.4 16 0.00056 35.5 4.7 121 431-558 126-259 (294)
92 2qp9_X Vacuolar protein sortin 47.6 19 0.00064 35.3 4.8 50 433-482 218-273 (355)
93 3f9v_A Minichromosome maintena 46.4 13 0.00045 39.5 3.8 47 449-495 521-585 (595)
94 3mfq_A TROA, high-affinity zin 45.9 22 0.00074 34.4 4.9 74 431-504 106-186 (282)
95 1ofh_A ATP-dependent HSL prote 45.5 21 0.00071 32.5 4.4 49 448-496 233-298 (310)
96 2l4b_A Acyl carrier protein; i 45.3 5.8 0.0002 31.2 0.7 29 476-504 37-65 (88)
97 1wwi_A Hypothetical protein TT 44.7 42 0.0014 31.3 6.3 59 431-490 2-60 (148)
98 1rr7_A Middle operon regulator 44.5 21 0.00072 31.5 4.2 54 438-503 12-72 (129)
99 1bu3_A Calcium-binding protein 44.3 61 0.0021 25.0 6.4 65 430-497 5-71 (109)
100 1toa_A Tromp-1, protein (perip 43.4 8.5 0.00029 37.9 1.7 101 431-538 140-247 (313)
101 2dhr_A FTSH; AAA+ protein, hex 42.7 9.6 0.00033 40.1 2.0 65 433-497 202-271 (499)
102 1njg_A DNA polymerase III subu 42.4 39 0.0013 28.4 5.4 60 431-494 184-248 (250)
103 1pva_A Parvalbumin; calcium bi 42.4 81 0.0028 24.3 6.9 65 430-497 5-71 (110)
104 1dv5_A APO-DCP, APO-D-alanyl c 41.7 5.7 0.00019 31.2 0.1 23 482-504 36-58 (80)
105 1rwy_A Parvalbumin alpha; EF-h 41.6 59 0.002 25.0 5.9 66 431-497 5-70 (109)
106 3vfd_A Spastin; ATPase, microt 40.8 30 0.001 33.9 5.0 65 432-496 282-364 (389)
107 2kwl_A ACP, acyl carrier prote 40.3 7.3 0.00025 30.2 0.5 26 479-504 38-63 (84)
108 4e2i_2 DNA polymerase alpha su 39.8 29 0.00099 29.3 4.1 49 437-487 5-61 (78)
109 3syl_A Protein CBBX; photosynt 39.3 25 0.00087 32.3 4.1 65 433-497 205-286 (309)
110 1juq_A ADP-ribosylation factor 39.2 52 0.0018 30.1 6.1 67 430-509 88-159 (171)
111 3h7c_X Agmatine deiminase; str 38.8 15 0.00051 38.2 2.6 68 469-537 175-264 (383)
112 1r4v_A Hypothetical protein AQ 38.0 37 0.0013 32.3 5.0 61 429-490 24-84 (171)
113 3pfi_A Holliday junction ATP-d 37.0 27 0.00094 32.7 4.0 66 431-496 183-253 (338)
114 3us6_A Histidine-containing ph 37.0 57 0.0019 29.2 5.8 49 434-482 7-66 (153)
115 2zyc_A Peptidoglycan hydrolase 35.9 22 0.00074 32.8 3.0 40 461-501 1-40 (170)
116 2pvb_A Protein (parvalbumin); 35.5 60 0.002 25.0 5.1 65 432-497 6-70 (108)
117 1yvi_A Histidine-containing ph 35.5 68 0.0023 28.2 6.0 45 434-478 7-63 (149)
118 2cgq_A Acyl carrier protein AC 35.4 2.6 8.9E-05 36.5 -3.0 29 475-503 50-78 (113)
119 3gzm_A Acyl carrier protein; h 35.3 7.7 0.00026 30.0 -0.1 27 478-504 33-59 (81)
120 2r62_A Cell division protease 35.2 3.9 0.00013 37.2 -2.1 32 465-496 221-252 (268)
121 1sxj_D Activator 1 41 kDa subu 35.0 25 0.00086 32.7 3.3 64 432-495 192-261 (353)
122 3ujp_A Mn transporter subunit; 34.7 26 0.00089 34.6 3.6 119 431-557 133-265 (307)
123 3fs7_A Parvalbumin, thymic; ca 34.3 55 0.0019 25.3 4.7 65 429-496 4-70 (109)
124 2dzn_B 26S protease regulatory 33.9 31 0.0011 27.2 3.3 32 466-497 37-68 (82)
125 4b4t_I 26S protease regulatory 33.6 23 0.0008 37.4 3.2 51 447-497 368-423 (437)
126 2keb_A DNA polymerase subunit 33.4 79 0.0027 28.0 5.9 59 432-497 26-91 (101)
127 3fi7_A LMO1076 protein; lister 33.1 40 0.0014 31.7 4.4 39 462-501 30-68 (183)
128 4b4t_K 26S protease regulatory 32.9 38 0.0013 35.2 4.6 49 449-497 361-414 (428)
129 1rro_A RAT oncomodulin; calciu 32.6 65 0.0022 24.8 4.9 67 430-497 4-70 (108)
130 4b4t_H 26S protease regulatory 32.4 25 0.00085 37.4 3.1 51 447-497 395-450 (467)
131 3cf0_A Transitional endoplasmi 32.3 11 0.00038 35.7 0.4 50 432-481 186-240 (301)
132 2qnw_A Acyl carrier protein; m 31.7 9 0.00031 29.6 -0.2 24 480-503 37-60 (82)
133 1mhq_A ADP-ribosylation factor 31.6 89 0.003 27.9 6.2 66 430-508 76-144 (148)
134 2i7a_A Calpain 13; calcium-dep 31.0 1.2E+02 0.0041 26.5 6.8 67 429-497 18-104 (174)
135 2ce7_A Cell division protein F 30.7 26 0.00089 36.7 2.9 50 448-497 202-256 (476)
136 2a7w_A PRA-PH, phosphoribosyl- 30.6 51 0.0017 29.4 4.4 59 452-523 55-113 (116)
137 3e46_A Ubiquitin-conjugating e 30.1 1.1E+02 0.0037 29.9 7.0 47 436-482 165-211 (253)
138 3ncv_A DNA mismatch repair pro 29.6 23 0.0008 33.6 2.2 46 469-515 161-206 (220)
139 3kdg_A DNA mismatch repair pro 29.3 36 0.0012 31.3 3.3 45 469-514 138-182 (197)
140 5pal_A Parvalbumin; calcium-bi 29.2 55 0.0019 25.3 3.9 66 429-497 3-70 (109)
141 2dnw_A Acyl carrier protein; A 28.7 5.2 0.00018 32.5 -2.2 23 481-503 46-68 (99)
142 2jq4_A AGR_C_4658P, hypothetic 28.0 5.4 0.00018 33.4 -2.2 23 481-503 54-76 (105)
143 3fwb_A Cell division control p 27.9 1.7E+02 0.0057 23.4 6.7 24 473-496 101-124 (161)
144 3k9o_A Ubiquitin-conjugating e 27.4 1.4E+02 0.0049 27.5 7.0 46 436-481 113-158 (201)
145 3ipq_A Oxysterols receptor LXR 27.3 32 0.0011 32.8 2.7 40 456-498 91-130 (283)
146 1x3o_A Acyl carrier protein; s 26.9 11 0.00038 28.4 -0.5 23 481-503 36-58 (80)
147 3hvm_A Agmatine deiminase; hyd 26.8 14 0.00047 37.7 0.0 68 469-537 153-242 (330)
148 2lol_A ACP, acyl carrier prote 26.7 8.4 0.00029 29.4 -1.2 25 480-504 36-60 (81)
149 2kyc_A Parvalbumin-3, parvalbu 26.4 68 0.0023 24.7 4.0 22 430-451 4-25 (108)
150 4hw4_A Induced myeloid leukemi 26.1 52 0.0018 30.0 3.7 46 435-483 56-111 (157)
151 4b4t_J 26S protease regulatory 26.1 38 0.0013 35.2 3.2 32 466-497 358-389 (405)
152 3b9p_A CG5977-PA, isoform A; A 26.0 73 0.0025 29.3 4.7 49 448-496 207-271 (297)
153 3pxi_A Negative regulator of g 25.9 1.7E+02 0.006 31.3 8.3 51 431-481 324-389 (758)
154 1sxj_B Activator 1 37 kDa subu 25.9 83 0.0028 28.6 5.0 63 431-495 165-229 (323)
155 3pxg_A Negative regulator of g 25.9 97 0.0033 31.5 6.1 66 431-496 324-405 (468)
156 1top_A Troponin C; contractIle 25.8 2E+02 0.0067 23.0 6.8 65 432-496 53-124 (162)
157 2chq_A Replication factor C sm 24.6 91 0.0031 28.3 5.1 63 431-495 160-224 (319)
158 2lnk_A Protein S100-A4; EF-han 24.2 2.3E+02 0.0078 23.9 7.2 43 431-473 40-95 (113)
159 2obh_A Centrin-2; DNA repair c 24.1 2.4E+02 0.0082 22.7 7.1 63 432-496 39-107 (143)
160 2aao_A CDPK, calcium-dependent 24.1 1E+02 0.0035 24.9 4.9 28 469-496 100-127 (166)
161 3cjh_B Mitochondrial import in 24.0 2.5E+02 0.0084 21.8 6.8 48 432-479 5-63 (64)
162 3ce7_A Specific mitochodrial a 23.8 5.1 0.00017 33.8 -3.2 26 479-504 52-77 (107)
163 3nnr_A Transcriptional regulat 23.7 21 0.00071 30.9 0.6 21 519-539 199-219 (228)
164 2kz2_A Calmodulin, CAM; TR2C, 23.3 2E+02 0.0069 22.3 6.2 63 432-494 26-91 (94)
165 3fes_A ATP-dependent CLP endop 22.8 67 0.0023 27.5 3.6 32 466-497 86-117 (145)
166 1af8_A Actinorhodin polyketide 22.7 46 0.0016 25.7 2.4 24 481-504 39-62 (86)
167 2iie_A Integration HOST factor 22.0 1.3E+02 0.0044 28.3 5.7 19 493-511 81-99 (204)
168 2bjv_A PSP operon transcriptio 21.8 1.2E+02 0.004 27.6 5.2 39 449-490 208-250 (265)
169 1q80_A SCP, sarcoplasmic calci 21.6 1.3E+02 0.0045 24.4 5.0 30 468-497 94-123 (174)
170 1f80_D Acyl carrier protein; t 21.3 10 0.00035 29.0 -1.7 23 481-503 38-60 (81)
171 2kr5_A PKS, aflatoxin biosynth 21.2 31 0.0011 26.6 1.1 24 481-504 41-64 (89)
172 3d8b_A Fidgetin-like protein 1 21.1 69 0.0024 31.1 3.7 45 433-477 252-298 (357)
173 1l0i_A Acyl carrier protein; a 21.1 11 0.00037 28.6 -1.6 23 481-503 34-56 (78)
174 3ejb_A Acyl carrier protein; p 21.0 15 0.0005 30.2 -0.9 26 479-504 51-76 (97)
175 2kgr_A Intersectin-1; structur 21.0 58 0.002 26.8 2.8 86 434-521 13-106 (111)
176 2vxy_A FTSZ, cell division pro 20.9 83 0.0028 32.5 4.4 94 436-541 150-253 (382)
177 1zpy_A Hypothetical protein NE 20.7 36 0.0012 29.6 1.5 33 447-479 42-74 (95)
178 3n1e_A Vacuolar protein sortin 20.6 1.4E+02 0.0047 27.3 5.4 70 436-511 63-135 (141)
179 3li6_A Calcium-binding protein 20.6 2.2E+02 0.0074 19.7 6.0 57 440-496 5-64 (66)
180 1c52_A Cytochrome-C552; electr 20.5 41 0.0014 28.2 1.8 44 483-526 76-126 (131)
181 3fh2_A Probable ATP-dependent 20.5 80 0.0027 26.9 3.6 32 466-497 86-117 (146)
182 4b4t_L 26S protease subunit RP 20.2 85 0.0029 32.7 4.4 42 456-497 377-422 (437)
No 1
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=3.3e-32 Score=225.91 Aligned_cols=75 Identities=55% Similarity=0.928 Sum_probs=73.0
Q ss_pred ccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccc
Q 007852 428 TNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTV 502 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~I 502 (587)
..+||+|++|++||++|||++.||+||||+|++||||||++|+++||+||||||++|||+|||+|||||+|||+|
T Consensus 2 s~~vl~k~~L~~Lv~~idp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~wni~i 76 (76)
T 1h3o_B 2 SHMVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWI 76 (76)
T ss_dssp -CCSSCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHTCCCC
T ss_pred CcccccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhhcCCcC
Confidence 468999999999999999999999999999999999999999999999999999999999999999999999996
No 2
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=98.89 E-value=2.6e-09 Score=88.80 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=72.5
Q ss_pred ccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCc
Q 007852 428 TNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSS 507 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFss 507 (587)
..+.|+|..+..|++..+. .+|.+|+.|.|.++.++|++.|+..|..+|+|-|..||+..||.+.|+|. +..+.||++
T Consensus 7 ~~~~ip~~~I~Riar~~Gv-~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~-g~~lYgf~~ 84 (84)
T 2hue_C 7 NIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGFGG 84 (84)
T ss_dssp GCCSSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT-CEEEESCC-
T ss_pred cCCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCCCCCC
Confidence 4577999999999999876 78999999999999999999999999999999999999999999999998 788899963
No 3
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.83 E-value=5.7e-09 Score=90.09 Aligned_cols=78 Identities=21% Similarity=0.292 Sum_probs=72.5
Q ss_pred ccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCc
Q 007852 428 TNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSS 507 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFss 507 (587)
..+.|+|..|..|++.... .+|.+|+.|.|.+++++|++.|+..|..+|+|-+-.||+..||.+.|+|. +..+.||++
T Consensus 25 ~i~~ip~~~I~Rlar~~Gv-~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~-g~~lYGf~~ 102 (102)
T 1id3_B 25 NIQGITKPAIRRLARRGGV-KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGFGG 102 (102)
T ss_dssp CGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT-TCCEESSCC
T ss_pred ccCCCCHHHHHHHHHHcCc-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCCCCCC
Confidence 4677999999999999865 78999999999999999999999999999999999999999999999998 678889863
No 4
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=98.77 E-value=1.2e-08 Score=87.54 Aligned_cols=79 Identities=19% Similarity=0.255 Sum_probs=73.0
Q ss_pred cccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCC
Q 007852 427 ATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFS 506 (587)
Q Consensus 427 ~tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFs 506 (587)
+..+.|++..|..|++.... .+|.+|+.|.|.++.++|+++|+..|..+|+|-+..||+..||.+.|++. +..+.||+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~-g~~lYGf~ 102 (103)
T 1tzy_D 25 DNIQGITKPAIRRLARRGGV-KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ-GRTLYGFG 102 (103)
T ss_dssp CGGGGSCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT-TCEEESCC
T ss_pred hhcccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc-CCCCcCCC
Confidence 34567999999999999987 78999999999999999999999999999999999999999999999998 67788986
Q ss_pred c
Q 007852 507 S 507 (587)
Q Consensus 507 s 507 (587)
+
T Consensus 103 ~ 103 (103)
T 1tzy_D 103 G 103 (103)
T ss_dssp C
T ss_pred C
Confidence 3
No 5
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=98.72 E-value=1.6e-08 Score=86.98 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=64.0
Q ss_pred cccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCC
Q 007852 427 ATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFS 506 (587)
Q Consensus 427 ~tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFs 506 (587)
+..+.|++..|..|++.... .+|.+|+.|.|.++.++|+++|+..|..+|+|-+..||+..||.+.|++. +..+.||+
T Consensus 25 ~~~~gip~~~I~Rlar~~G~-~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~-g~~lYGf~ 102 (103)
T 2yfw_B 25 DNIQGITKPAIRRLARRGGV-KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGFG 102 (103)
T ss_dssp -----CCHHHHHHHHHHTTC-CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH-C-------
T ss_pred hhhccCCHHHHHHHHHHcCc-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc-CCCCcCCC
Confidence 34566999999999999987 78999999999999999999999999999999999999999999999998 57788885
Q ss_pred c
Q 007852 507 S 507 (587)
Q Consensus 507 s 507 (587)
+
T Consensus 103 ~ 103 (103)
T 2yfw_B 103 G 103 (103)
T ss_dssp -
T ss_pred C
Confidence 3
No 6
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=98.63 E-value=6.1e-08 Score=77.51 Aligned_cols=65 Identities=18% Similarity=0.319 Sum_probs=61.3
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
..|+|..+..|+|+++ ..++++++.+.|.+++++|+++|+..|+.+|+|-|..||+.+||.+.++
T Consensus 5 ~~lp~a~v~Rl~r~~g-~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 5 GELPIAPVDRLIRKAG-AERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CCSCHHHHHHHHHHTT-CSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred ccCChHHHHHHHHHcC-cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 3589999999999985 5899999999999999999999999999999999999999999999986
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=98.55 E-value=1.6e-07 Score=74.29 Aligned_cols=64 Identities=22% Similarity=0.303 Sum_probs=61.5
Q ss_pred CChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 432 LGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
|+|..+..|+|++ +...+..|+.++|.+.+++||..+++.|..+|+|.|..||..+||++.+++
T Consensus 3 lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 3 LPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp SCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 7899999999999 678999999999999999999999999999999999999999999999976
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=98.50 E-value=1.9e-07 Score=76.08 Aligned_cols=69 Identities=9% Similarity=0.081 Sum_probs=64.6
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.+.|++..+..+++++.|+..+.+|+.++|.+.+++||+.++..|..+|+|.+..||..+||...+|.-
T Consensus 2 ~~~LP~A~V~rI~K~~~p~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKPHLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCTTCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999999999999999999999999999999999999999999999999864
No 9
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=98.47 E-value=2.3e-07 Score=81.16 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=63.1
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcc
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
..-|+|..|..|+++. ...++.+|+.+.|.+++++|+++|+..|..+|+|-|..||+..||.+.|+|+-.+.
T Consensus 5 d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~ 76 (111)
T 3b0c_T 5 EPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVT 76 (111)
T ss_dssp -----CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSB
T ss_pred CCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcc
Confidence 4678999999999998 56899999999999999999999999999999999999999999999999985544
No 10
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=98.27 E-value=2.2e-06 Score=71.86 Aligned_cols=69 Identities=20% Similarity=0.354 Sum_probs=63.5
Q ss_pred ccccCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 428 TNQLLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
++..|++..+..++|++.| ..++..|+.++|.+.+++||..++..|...|+|.|..||..+||...+++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMST 74 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 4678999999999999944 67899999999999999999999999999999999999999999999983
No 11
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.22 E-value=3.5e-06 Score=68.83 Aligned_cols=62 Identities=23% Similarity=0.358 Sum_probs=56.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 435 RKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 435 rKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+-|..+++..+. +.++++|...|+|++.+|+.+|+..|..+|+|.|.+||++.||.|.++..
T Consensus 5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~~ 66 (68)
T 1taf_A 5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEVT 66 (68)
T ss_dssp HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHT
T ss_pred HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHhc
Confidence 457788888766 68999999999999999999999999999999999999999999999864
No 12
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.8e-06 Score=77.44 Aligned_cols=61 Identities=20% Similarity=0.343 Sum_probs=56.8
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCc
Q 007852 446 SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSS 507 (587)
Q Consensus 446 P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFss 507 (587)
.-.+|.+++.|.+.++.++|+++|+..|+.+|+|.|.+||++.||.+.|+|. |..+-|||+
T Consensus 61 GvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~-G~~lygf~~ 121 (121)
T 2ly8_A 61 GSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTLYGFGG 121 (121)
T ss_dssp CSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHT-TCGGGGCCC
T ss_pred CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhC-CCcCCCCCC
Confidence 3457999999999999999999999999999999999999999999999996 779999984
No 13
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=98.12 E-value=4.7e-06 Score=77.01 Aligned_cols=70 Identities=11% Similarity=0.233 Sum_probs=65.9
Q ss_pred ccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 428 TNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
....|++..+..|+|+. ...++..|+.+.|.+++++|++.|+..|+.+|+|-|..||..+||.+.|+++.
T Consensus 79 ~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~~ 148 (154)
T 1f1e_A 79 DGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYSM 148 (154)
T ss_dssp CSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHS
T ss_pred ccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhcC
Confidence 34578999999999998 67899999999999999999999999999999999999999999999999863
No 14
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=98.05 E-value=8.5e-06 Score=77.02 Aligned_cols=71 Identities=14% Similarity=0.326 Sum_probs=66.3
Q ss_pred ccccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 426 EATNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 426 e~tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
+.....|++..|..+++++-|+.+|.+|+.++|.+++.+||.-|+..|..+|+|.+..||..+||...|++
T Consensus 10 ~~eD~~LP~A~V~RImK~alp~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~ 80 (179)
T 1jfi_B 10 NDDDLTIPRAAINKMIKETLPNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALES 80 (179)
T ss_dssp --CCCCCCHHHHHHHHHHHSTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred chhhhhcCHHHHHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 34567899999999999998889999999999999999999999999999999999999999999999994
No 15
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.98 E-value=1.6e-05 Score=67.22 Aligned_cols=64 Identities=23% Similarity=0.160 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 431 LLGKRKIQDLVSQVD------SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 431 ILtKrKLqeLVrqID------P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
+|.|--+..|||+|. .+.++..++.+.|.+.+++|+.++.+.+...|+|.|.-||..|||+|..
T Consensus 3 LI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~ 72 (82)
T 3nqj_A 3 LIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLAR 72 (82)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHH
Confidence 578989999999997 5789999999999999999999999999999999999999999999975
No 16
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.3e-05 Score=78.61 Aligned_cols=74 Identities=18% Similarity=0.326 Sum_probs=65.3
Q ss_pred CChHHHHHHHHhcC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcccc
Q 007852 432 LGKRKIQDLVSQVD--------SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 432 LtKrKLqeLVrqID--------P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IP 503 (587)
=-++.|.|++. |+ .-.+|..++.|.+.++.++|+++|+..|+.+|+|.+..||++.||.+.|+|. |..+.
T Consensus 154 r~~~vLrD~i~-i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~-gr~lY 231 (235)
T 2l5a_A 154 KYTSVLRDIID-ISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ-GRTLY 231 (235)
T ss_dssp THHHHHHHHHH-HTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH-HHHHT
T ss_pred hHHHHHHHhhc-ccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc-CCccc
Confidence 34567778876 65 3458999999999999999999999999999999999999999999999997 58889
Q ss_pred CCCc
Q 007852 504 GFSS 507 (587)
Q Consensus 504 GFss 507 (587)
||+.
T Consensus 232 Gf~~ 235 (235)
T 2l5a_A 232 GFGG 235 (235)
T ss_dssp TCCC
T ss_pred cCCC
Confidence 9973
No 17
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=97.92 E-value=2.3e-05 Score=65.47 Aligned_cols=65 Identities=23% Similarity=0.233 Sum_probs=60.2
Q ss_pred cCChHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 431 LLGKRKIQDLVSQVD----SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 431 ILtKrKLqeLVrqID----P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
+|+|--+..|||+|. ++.++..++.+.|.+.+++|+..+.+.+..+|+|.|.-||.+|||+|...
T Consensus 3 li~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~r 71 (77)
T 2hue_B 3 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARR 71 (77)
T ss_dssp CSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHH
Confidence 578999999999992 35789999999999999999999999999999999999999999999864
No 18
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=97.89 E-value=1.4e-05 Score=74.37 Aligned_cols=68 Identities=24% Similarity=0.167 Sum_probs=61.8
Q ss_pred cccccCChHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 427 ATNQLLGKRKIQDLVSQVD------SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 427 ~tnqILtKrKLqeLVrqID------P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
+++-+|.|--+..||++|. .+..+..++.++|.+.+|+|+.++.+.+..+|+|.|--||.+|||+|+.
T Consensus 73 SteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLAr 146 (156)
T 3r45_A 73 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLAR 146 (156)
T ss_dssp --CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHH
Confidence 3567889999999999997 3567899999999999999999999999999999999999999999975
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=97.87 E-value=2e-05 Score=68.46 Aligned_cols=68 Identities=22% Similarity=0.236 Sum_probs=59.0
Q ss_pred cccccCChHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 427 ATNQLLGKRKIQDLVSQVDS-------QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 427 ~tnqILtKrKLqeLVrqIDP-------~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
+++-+|.|--+..||++|.. +..+..++.++|.+.+++|+..+.+.+..+|+|.|--||.+|||+|..
T Consensus 23 st~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~ 97 (100)
T 2yfv_A 23 STDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLAR 97 (100)
T ss_dssp -----CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred cchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHH
Confidence 35678999999999999972 568999999999999999999999999999999999999999999985
No 20
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=97.87 E-value=1.8e-05 Score=72.53 Aligned_cols=69 Identities=23% Similarity=0.166 Sum_probs=62.7
Q ss_pred cccccCChHHHHHHHHhcC------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 427 ATNQLLGKRKIQDLVSQVD------SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 427 ~tnqILtKrKLqeLVrqID------P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
+++-+|.|--+..||++|. .+..+..++.++|.+.+|+|+.++.+.+..+|+|.|--||.+|||+|+..
T Consensus 57 st~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArr 131 (140)
T 3nqu_A 57 STHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 131 (140)
T ss_dssp --CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHH
Confidence 4567889999999999997 46789999999999999999999999999999999999999999999753
No 21
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=97.83 E-value=1.6e-05 Score=69.93 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=53.4
Q ss_pred HHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 438 QDLVSQVDS--QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 438 qeLVrqIDP--~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
..+++++.. +..+.++|...|.+++.+|+++|...+..+|||-|..||+..||.|.++|+
T Consensus 26 ~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 26 GCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 344555433 578999999999999999999999999999999999999999999999996
No 22
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=97.82 E-value=3.9e-05 Score=70.91 Aligned_cols=66 Identities=14% Similarity=0.165 Sum_probs=62.4
Q ss_pred cCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 431 LLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
.|++..+..|+|+.=|..++..|+.+.|.+++.+|+..|+..|..+|+|.|..||..+||...|.+
T Consensus 4 ~LP~a~V~Riik~~lg~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 4 ELPKAAIERIFRQGIGERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp CCCHHHHHHHHHTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred cCCccHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 589999999999985559999999999999999999999999999999999999999999999966
No 23
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=97.82 E-value=3.7e-05 Score=70.08 Aligned_cols=68 Identities=24% Similarity=0.228 Sum_probs=63.0
Q ss_pred ccccCChHHHHHHHHhcC----CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 428 TNQLLGKRKIQDLVSQVD----SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 428 tnqILtKrKLqeLVrqID----P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
++-+|.|--+..||++|. .+..+..++.++|.+.+|+|+..+.+.+..+|.|.|--||.+|||+|...
T Consensus 59 t~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 130 (136)
T 1tzy_C 59 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARR 130 (136)
T ss_dssp CSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred hhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHH
Confidence 566889999999999992 46899999999999999999999999999999999999999999999864
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=97.78 E-value=8.5e-05 Score=61.04 Aligned_cols=66 Identities=15% Similarity=0.245 Sum_probs=62.1
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
..+|++..+.++++.++- ..+.+|+.+.|.+-++..+..|+..|+++++|-|..||+..||...|+
T Consensus 4 ~s~lp~~~v~~iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 457899999999999977 799999999999999999999999999999999999999999999875
No 25
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.77 E-value=5.5e-05 Score=64.71 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=52.9
Q ss_pred HHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 439 DLVSQVDS--QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 439 eLVrqIDP--~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.+|.++.+ +..+++++...|.+++.+|+++|...+..+|||-|.+||+..||.|.++||
T Consensus 20 ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn 80 (90)
T 3v9r_A 20 ERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQ 80 (90)
T ss_dssp HHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC
Confidence 45555543 367999999999999999999999999999999999999999999999997
No 26
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=97.72 E-value=5.6e-05 Score=67.58 Aligned_cols=70 Identities=26% Similarity=0.248 Sum_probs=62.1
Q ss_pred ccccCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 428 TNQLLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
....|++..|..+++.++| ...+..|+.++|.+.++.||..++..|..+|+|.+..||..+||...|++.
T Consensus 6 ~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l 76 (128)
T 2byk_B 6 EDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTEL 76 (128)
T ss_dssp -----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHT
T ss_pred ccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHc
Confidence 3567899999999998876 678999999999999999999999999999999999999999999999985
No 27
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=97.50 E-value=0.00012 Score=65.24 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=49.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 447 QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 447 ~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
+..+++++...|.+++.+|+++|...+..+|||-|.+||+..||.|.++|+=
T Consensus 45 ~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~ 96 (113)
T 4dra_A 45 EMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSN 96 (113)
T ss_dssp TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCH
Confidence 5679999999999999999999999999999999999999999999999973
No 28
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=97.43 E-value=0.00034 Score=59.38 Aligned_cols=74 Identities=22% Similarity=0.206 Sum_probs=63.5
Q ss_pred ccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcc
Q 007852 428 TNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
....|+-.++..+++.-....++..|+-.+|.+.++.||..+++.|+..|++.|..||..+||..++++...+.
T Consensus 16 ~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~ 89 (97)
T 1n1j_B 16 RVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFD 89 (97)
T ss_dssp ----CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGG
T ss_pred CCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHH
Confidence 34678999999999975444689999999999999999999999999999999999999999999998865544
No 29
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.33 E-value=0.00024 Score=65.30 Aligned_cols=53 Identities=19% Similarity=0.121 Sum_probs=50.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCC
Q 007852 447 QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWH 499 (587)
Q Consensus 447 ~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWN 499 (587)
+..+++++...|.+++.+|+++|...+..+|||-|..||+..||.|.++|+=.
T Consensus 37 ~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~ 89 (140)
T 3vh5_A 37 GVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNS 89 (140)
T ss_dssp TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHH
Confidence 56799999999999999999999999999999999999999999999999744
No 30
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.30 E-value=0.00037 Score=62.94 Aligned_cols=66 Identities=21% Similarity=0.345 Sum_probs=61.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccC
Q 007852 435 RKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 435 rKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
.-|..++++|.|+..|..++.++|-.+++|+.|.|...|++||+|.+..||..+||+...+- -+||
T Consensus 37 ~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL----lLpG 102 (123)
T 2nqb_D 37 IYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRL----LLPG 102 (123)
T ss_dssp HHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH----HSCH
T ss_pred HHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHH----hCcH
Confidence 45889999999999999999999999999999999999999999999999999999998764 4665
No 31
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.21 E-value=0.00052 Score=62.21 Aligned_cols=65 Identities=20% Similarity=0.355 Sum_probs=60.6
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccC
Q 007852 436 KIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 436 KLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
-|..++++|.|+..|..++-++|-.+++|+.|.|...|++||+|.+..||..+||+...+- -+||
T Consensus 41 YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrL----lLpG 105 (126)
T 1tzy_B 41 YVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL----LLPG 105 (126)
T ss_dssp HHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH----HSCH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----hCcH
Confidence 4889999999999999999999999999999999999999999999999999999998764 4665
No 32
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=97.11 E-value=0.00094 Score=58.80 Aligned_cols=70 Identities=24% Similarity=0.190 Sum_probs=63.5
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
+.-|+..+|..+++.-....++..|+-.+|...++.||..+++.|+..|+.+|..||..+||..++++.-
T Consensus 39 ~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 39 IHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp CCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred cCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 4558999999999975455689999999999999999999999999999999999999999999998753
No 33
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.06 E-value=0.0014 Score=55.16 Aligned_cols=70 Identities=16% Similarity=0.200 Sum_probs=58.8
Q ss_pred cccccccCChHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 425 TEATNQLLGKRKIQDLVSQV--DSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 425 ~e~tnqILtKrKLqeLVrqI--DP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
.|+.+..++++-|.+|++.. |.+.+|.+|+-+++-++.|-||...+.+|+..||-++.+.||+.|+.-++
T Consensus 2 ~~~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~ 73 (81)
T 3b0b_C 2 YEEREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVL 73 (81)
T ss_dssp -----CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred CCccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHH
Confidence 45567789999999999886 45778999999999999999999999999999999999999999975443
No 34
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=96.98 E-value=0.0018 Score=60.95 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=59.4
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 434 KRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 434 KrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+.-|..++++|.|+..+.+++.+.|-.+.+|+++.|+..|++|++|.+..|+..+||+...+..
T Consensus 6 ~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~ 69 (192)
T 2jss_A 6 SSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLI 69 (192)
T ss_dssp HHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHh
Confidence 3457889999999999999999999999999999999999999999999999999999988753
No 35
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.81 E-value=0.0041 Score=61.21 Aligned_cols=125 Identities=21% Similarity=0.144 Sum_probs=88.7
Q ss_pred ccCChHHHHHHHHhcCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccc
Q 007852 430 QLLGKRKIQDLVSQVDS-------QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTV 502 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP-------~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~I 502 (587)
-+|.|--+..|||+|.. ..++..++..+|-+.++.|+-...+.+...|.|.|--||..|||+|+. |-.|.+.
T Consensus 10 ~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLar-rirg~~~ 88 (235)
T 2l5a_A 10 LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLAR-RIRGQFL 88 (235)
T ss_dssp -CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHH-TSSCSCC
T ss_pred ccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHH-HHhhccC
Confidence 46788899999999933 468999999999999999999999999999999999999999999986 4456665
Q ss_pred cCCCccccccccCCCCcHHHHHHHHHH-HHhhccCCcccccCChHHHHhhccCCCCccCcccccC
Q 007852 503 PGFSSEERNHQRKSLSSDVHSKRLEMI-RALMEPSQSETITNDPREMIRQGLGNPVGVNTHMKSS 566 (587)
Q Consensus 503 PGFssDEir~yrK~~pTeaHkQRMAlI-RK~m~ss~se~~~~~~~~~~~~g~~n~~~~~h~~r~~ 566 (587)
.++...| ++....+.-|.+.+-| .|+=+ -..+.+.. ---.|+-++-|..+|-.
T Consensus 89 ~p~evme----~~~~~~~~~k~~~~~i~~ky~~-~~~~gd~i------dl~tG~iv~dnGh~~~l 142 (235)
T 2l5a_A 89 VPRGSME----RHKLADENMRKVWSNIISKYES-IEEQGDLV------DLKTGEIVEDNGHIKTL 142 (235)
T ss_dssp CCSSSCH----HHHHHHHHHHHHHHHHHHHHTT-CCCCSCCC------SSSSCCCCCCCCCCCSC
T ss_pred CchhHHH----HHHHHHHHHHHHHHHHHHHHhc-ccCCCCcc------cCCCCceeeeCcHHHHh
Confidence 4444322 3344556667777754 55433 21111111 12256666666666655
No 36
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=96.79 E-value=0.0017 Score=55.40 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=57.2
Q ss_pred cccCChHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcc
Q 007852 429 NQLLGKRKIQDLVSQVDSQ-GKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~-~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
+-.|+-.++..+++. |+. ..+..|+--+|-..++-||.++++.|+..|+++|..||..+||..+++++-.+.
T Consensus 9 ~~~fPvaRIkrimK~-~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~ 81 (98)
T 1jfi_A 9 NARFPPARIKKIMQT-DEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPA 81 (98)
T ss_dssp -CCCCHHHHHHHHTT-STTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC------
T ss_pred CCCCChHHHHHHHHc-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhh
Confidence 345788899999997 554 689999999999999999999999999999999999999999999998754443
No 37
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=96.26 E-value=0.0087 Score=53.20 Aligned_cols=67 Identities=10% Similarity=0.221 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.++..++++-.-.+++..++-..|..+.|.|+.+|++.|...|+|.|..+|..+||++.+..
T Consensus 21 LqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 21 VIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp CSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred ccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4578889999999987778999999999999999999999999999999999999999999998764
No 38
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=96.26 E-value=0.0092 Score=53.24 Aligned_cols=67 Identities=15% Similarity=0.218 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.++..++++-...+++..++-..|..+.|.|+.+|++.|...|+|.+..+|..+||++.+..
T Consensus 22 L~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 22 LQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp CSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 4578899999999986778999999999999999999999999999999999999999999998764
No 39
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=96.15 E-value=0.017 Score=49.09 Aligned_cols=66 Identities=15% Similarity=0.193 Sum_probs=58.0
Q ss_pred cccCChHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 429 NQLLGKRKIQDLVSQV--DSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 429 nqILtKrKLqeLVrqI--DP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
...++++-|.+|++.. |.+.+|.+|+-.++-++.|-||...+.+|+..|+-.+...||+.|+.-+|
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~ 77 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVL 77 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 4678899999999865 56778999999999999999999999999999999999999999975443
No 40
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=96.14 E-value=0.011 Score=53.15 Aligned_cols=67 Identities=12% Similarity=0.211 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.++..++++-...+++..++-..|..+.|.|+.+|++.|...|+|.+..+|..+||++.+..
T Consensus 24 LqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 24 LQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp CSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 4678899999999976778999999999999999999999999999999999999999999998763
No 41
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=96.11 E-value=0.0096 Score=53.69 Aligned_cols=67 Identities=10% Similarity=0.209 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.++..++++-...+++..++-..|..+.|.|+.+|++.|+..|+|.+..+|..+||++.+..
T Consensus 24 LqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 24 LTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp CSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred eecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 4678899999999976777999999999999999999999999999999999999999999998764
No 42
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=96.05 E-value=0.011 Score=54.59 Aligned_cols=67 Identities=12% Similarity=0.213 Sum_probs=62.1
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.++..++++-...++++.++-..|..+.|.|+.+|++.|...|+|.+..+|..+||++.+..
T Consensus 43 LqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 43 LQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp CSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred eeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 3578889999999987778999999999999999999999999999999999999999999998763
No 43
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=95.64 E-value=0.022 Score=51.16 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=60.7
Q ss_pred ccCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.+++.++++-.- .++++.++-..|..+.|.|+.+|++.|...|+|.|..+|..+||++.+..
T Consensus 26 LqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 26 LQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp CSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred ccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 46788899999998653 46899999999999999999999999999999999999999999998764
No 44
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=95.46 E-value=0.021 Score=51.97 Aligned_cols=74 Identities=16% Similarity=0.235 Sum_probs=53.8
Q ss_pred ccccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hhcCCCCccchhHHHHHhhcCCcc
Q 007852 428 TNQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLA-KHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 428 tnqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLA-KHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
....|+-.+|..+++.-.....+..++-.++-..++-||..++..|+..| +.+|..||..+||..++++.-.+.
T Consensus 16 ~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~d 90 (140)
T 2byk_A 16 AETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLE 90 (140)
T ss_dssp -------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTG
T ss_pred cCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhh
Confidence 34677888899999874334689999999999999999999999999999 999999999999999999754444
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=95.30 E-value=0.042 Score=51.67 Aligned_cols=67 Identities=15% Similarity=0.207 Sum_probs=60.8
Q ss_pred ccCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-.|+-.++..++++-.. .++++.++-..|..+.|.|+.+|++.|...|||.|..+|..+||++.+..
T Consensus 104 l~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 104 LQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp CCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 46788899999998743 47999999999999999999999999999999999999999999998764
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=95.21 E-value=0.073 Score=45.31 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=51.0
Q ss_pred cCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-CCccchhHHHHH
Q 007852 431 LLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKS-STLESKDILLHL 494 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKS-dTLEvKDVQLhL 494 (587)
-|+|+++..|+..|. +.++.++|..+|--||..||-++|+.|..+.+.++. .-|..+.|.-.+
T Consensus 16 ~f~k~~vKrl~~~~~-~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~ 79 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT-GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAV 79 (89)
T ss_dssp CCCHHHHHHHHHHHH-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc-CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHH
Confidence 579999999999996 568999999999999999999999999999887753 234444443333
No 47
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=89.16 E-value=1.2 Score=42.15 Aligned_cols=67 Identities=10% Similarity=0.143 Sum_probs=54.7
Q ss_pred CChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 432 LGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIADD----FIDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 432 LtKrKLqeLVrqID--P~~kLD~DVEELLLeIADD----FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
+++..+.++++..- .+..+++++.+.|.++++. .+.+++..|+.+|..++.+.|+.+||.-.++.-.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHSB
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhc
Confidence 46677777776432 3467999999999999983 7788999999999999999999999998887543
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=87.35 E-value=0.71 Score=39.88 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=44.1
Q ss_pred cCChHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------CCccchhH
Q 007852 431 LLGKRKIQDLVSQV--DSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKS-------STLESKDI 490 (587)
Q Consensus 431 ILtKrKLqeLVrqI--DP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKS-------dTLEvKDV 490 (587)
.|+|.-|.+|+..- +.+.+|.+|+-+++-++.|-||...+-+|..-.+--+. -.|++.|+
T Consensus 1 ~ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDL 69 (88)
T 3v9r_B 1 MLSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDL 69 (88)
T ss_dssp CCCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHH
Confidence 36777788888744 66778999999999999999999999998644433222 26777774
No 49
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=86.26 E-value=0.72 Score=38.61 Aligned_cols=49 Identities=12% Similarity=0.237 Sum_probs=33.8
Q ss_pred hHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Q 007852 434 KRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSS 483 (587)
Q Consensus 434 KrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSd 483 (587)
++||.+..++-+ -..+++||++++---+++-+.++++.-+.+|+||...
T Consensus 9 qkri~~I~~k~g-l~~~~~dv~~~iS~a~qeRLr~llekl~~~a~~R~~~ 57 (75)
T 1h3o_A 9 QRRILEIGKKHG-ITELHPDVVSYVSHATQQRLQNLVEKISETAQQKNFS 57 (75)
T ss_dssp HHHHHHHHHTTT-CCEECTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHhcC-CCcCChhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 456667766532 2458999999999999999999999999999999874
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=85.65 E-value=1.9 Score=40.63 Aligned_cols=73 Identities=10% Similarity=0.149 Sum_probs=55.5
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhhhcCCCCc
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDF-----------------------IDSVTSFACNLAKHRKSSTL 485 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDF-----------------------VdsVvt~ACrLAKHRKSdTL 485 (587)
..+++.+.|.++-+.+ .+..+++++.+.+.+++.+. ...++..+..+|+.++.+.|
T Consensus 207 ~~~~~~~~i~~~~~~~-~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v 285 (331)
T 2r44_A 207 QKIVSKNDVLEIRNEI-NKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYV 285 (331)
T ss_dssp CCCSCHHHHHHHHHHH-HTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBC
T ss_pred cccCCHHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCC
Confidence 3567777777776554 46789999999999988543 33567777788999999999
Q ss_pred cchhHHHHHhhcCCccc
Q 007852 486 ESKDILLHLEKNWHLTV 502 (587)
Q Consensus 486 EvKDVQLhLERnWNI~I 502 (587)
+..||.-.++.-+..++
T Consensus 286 ~~~dv~~~~~~vl~~r~ 302 (331)
T 2r44_A 286 LPEDIKEVAYDILNHRI 302 (331)
T ss_dssp CHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHHHHhHhhc
Confidence 99999988876655443
No 51
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.70 E-value=4.2 Score=37.80 Aligned_cols=68 Identities=12% Similarity=0.162 Sum_probs=52.9
Q ss_pred ccCChHHHHHHHHhc----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 430 QLLGKRKIQDLVSQV----DSQGKVDPEVEDLLLEIAD------DFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 430 qILtKrKLqeLVrqI----DP~~kLD~DVEELLLeIAD------DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.-+++..+.++++.. .....+++++.+.|.++++ .++.+++..++.+|..++..+|+.+||.-.+++.
T Consensus 195 ~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 195 PPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 345677777777642 2346899999999999998 2455788999999998888899999998777654
No 52
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=81.89 E-value=3.6 Score=38.42 Aligned_cols=55 Identities=5% Similarity=-0.175 Sum_probs=45.8
Q ss_pred CCCCCHHHHHHHHHHHHH-------HHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcc
Q 007852 447 QGKVDPEVEDLLLEIADD-------FIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 447 ~~kLD~DVEELLLeIADD-------FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
...|++++.+.|.+++.. -+.+++..|+.+|+.++.++|+..||.-.++.-+.-+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r 326 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHR 326 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhc
Confidence 458999999999999875 5778999999999999999999999987776544433
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=80.59 E-value=2.3 Score=39.71 Aligned_cols=67 Identities=15% Similarity=0.211 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHhc----CCCCCCCHHHHHHHHHHHH------HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 431 LLGKRKIQDLVSQV----DSQGKVDPEVEDLLLEIAD------DFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 431 ILtKrKLqeLVrqI----DP~~kLD~DVEELLLeIAD------DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
-+++..+.++++.. -....+++++.+.+.+.++ .++.+++..++.+|..++.++|+.+||.-.+++.
T Consensus 200 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 200 PYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 45677777777644 1346799999999999998 5677899999999998898999999998887664
No 54
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=79.09 E-value=0.83 Score=36.12 Aligned_cols=52 Identities=15% Similarity=0.095 Sum_probs=33.5
Q ss_pred HHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCccccccc
Q 007852 457 LLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQ 513 (587)
Q Consensus 457 LLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFssDEir~y 513 (587)
.|.+.++.| |..+|..|+..|-.|+...|+.+|+.-.|++- .|+.. ++++.|
T Consensus 27 ~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~----~ps~~-~~l~~y 82 (83)
T 3aji_B 27 DYVARPDKISGADINSICQESGMLAVRENRYIVLAKDFEKAYKTV----IKKDE-QEHEFY 82 (83)
T ss_dssp HHHTSSCCCCHHHHHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH----CC----------
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH----ccCch-HHHHhc
Confidence 344444444 67899999999999998999999998888873 57666 565544
No 55
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=74.59 E-value=14 Score=39.42 Aligned_cols=65 Identities=15% Similarity=0.138 Sum_probs=50.9
Q ss_pred CCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHhhh----cCCCCccchhHHHHHhhcCCccccCCCcccc
Q 007852 446 SQGKVDPEVEDLLLEIADDF---------IDSVTSFACNLAKH----RKSSTLESKDILLHLEKNWHLTVPGFSSEER 510 (587)
Q Consensus 446 P~~kLD~DVEELLLeIADDF---------VdsVvt~ACrLAKH----RKSdTLEvKDVQLhLERnWNI~IPGFssDEi 510 (587)
....+++++.+.+.++++.| +.++++.+|..++. .+...|+.+||.-++++..++.++.+..+|+
T Consensus 369 ~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~~~ip~~~~~~~~~ 446 (758)
T 1r6b_X 369 HDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDR 446 (758)
T ss_dssp HTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHHSCCCCCCSSSSHH
T ss_pred cCCCCCHHHHHHHHHHhhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHhcCCCccccchhHH
Confidence 35679999999999999886 34678888888776 3456799999999999987777666665553
No 56
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.11 E-value=6.1 Score=37.13 Aligned_cols=66 Identities=11% Similarity=0.190 Sum_probs=51.3
Q ss_pred CChHHHHHHHHhcC----CCCCCCHHHHHHHHHHH---------H---HHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 432 LGKRKIQDLVSQVD----SQGKVDPEVEDLLLEIA---------D---DFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 432 LtKrKLqeLVrqID----P~~kLD~DVEELLLeIA---------D---DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
+++..+.++++..- ....+++++.+.|.+.+ + .++.+++..++.+|..++.++++.+||.-.++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 45566666665431 23579999999999999 2 34688899999999999999999999988877
Q ss_pred hc
Q 007852 496 KN 497 (587)
Q Consensus 496 Rn 497 (587)
..
T Consensus 273 ~~ 274 (389)
T 1fnn_A 273 EV 274 (389)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 57
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=73.22 E-value=1.5 Score=35.60 Aligned_cols=48 Identities=21% Similarity=0.334 Sum_probs=37.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCc
Q 007852 456 DLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSS 507 (587)
Q Consensus 456 ELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFss 507 (587)
+.|.+.++.| |..+|..|+..|-+|+...|+.+|+.-.|++- +||...
T Consensus 26 ~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v----~~~~~~ 77 (88)
T 3vlf_B 26 ELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV----ISGYKK 77 (88)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHH----TC----
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHH----hcCccc
Confidence 4466666667 89999999999999999999999999999884 455443
No 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=73.19 E-value=7.2 Score=33.73 Aligned_cols=62 Identities=10% Similarity=-0.056 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhc--CCCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 433 GKRKIQDLVSQV--DSQGKVDPEVEDLLLEIAD---DFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 433 tKrKLqeLVrqI--DP~~kLD~DVEELLLeIAD---DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
+.+.+.++++.+ ..+..+++++.+.|.+.++ .-+.++++.+|..|...+ .+|+.+||.-.|+
T Consensus 175 ~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 175 MDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 334444444433 2245799999999988876 356678888888887665 4599999987765
No 59
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=73.05 E-value=11 Score=35.47 Aligned_cols=65 Identities=12% Similarity=0.111 Sum_probs=50.9
Q ss_pred cCChHHHHHHHHhc----CCCCCCCHHHHHHHHHHHH---H---HHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 431 LLGKRKIQDLVSQV----DSQGKVDPEVEDLLLEIAD---D---FIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 431 ILtKrKLqeLVrqI----DP~~kLD~DVEELLLeIAD---D---FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
-+++..+.++++.. -....+++++.+.+.++++ - .+.+++..++.+|. +..+|+.+||.-.+++.
T Consensus 196 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 196 PYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 45788888888764 2346799999999999987 2 45678888888888 66789999998888764
No 60
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=72.96 E-value=1.7 Score=34.03 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=36.8
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 456 DLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 456 ELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
+.|.+.++.| |..++..|+..|-.|+...|+.+|+.-.|++-.
T Consensus 28 ~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v~ 74 (78)
T 3kw6_A 28 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVM 74 (78)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 4466777777 899999999999999999999999999998753
No 61
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.45 E-value=13 Score=39.22 Aligned_cols=65 Identities=9% Similarity=0.093 Sum_probs=53.5
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADD-------------FIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADD-------------FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
..+++.+.|.++.+.+.. ..++++|.+.+.+++.+ ....++..|..+|+.++.+.|+..||. .+.
T Consensus 206 ~~~~~~e~l~~~~~~~~~-v~v~d~v~e~i~~l~~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~ 283 (500)
T 3nbx_X 206 ALQVTDEEYERWQKEIGE-ITLPDHVFELIFMLRQQLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLK 283 (500)
T ss_dssp TTSBCHHHHHHHHHHHTT-CBCCHHHHHHHHHHHHHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGG
T ss_pred cceecHHHHHHHHhcCCc-ccCchHHHHHHHHHHHHhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHH
Confidence 457788888888877754 78999999999999853 445688889999999999999999999 443
No 62
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=69.21 E-value=7.9 Score=34.79 Aligned_cols=50 Identities=20% Similarity=0.200 Sum_probs=43.4
Q ss_pred cCChHHHHHHHHhcC----C---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007852 431 LLGKRKIQDLVSQVD----S---QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHR 480 (587)
Q Consensus 431 ILtKrKLqeLVrqID----P---~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHR 480 (587)
+|.|--...|||+|- . ..++..++...|.+.+++|+-...+.+-..|.|.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA 57 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHL 57 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcC
Confidence 466777888998872 2 5689999999999999999999999999999997
No 63
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.17 E-value=4.7 Score=36.63 Aligned_cols=64 Identities=8% Similarity=0.082 Sum_probs=43.2
Q ss_pred ChHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 433 GKRKIQDLVSQVDSQGKVDPEV-EDLLLEIADD----FIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 433 tKrKLqeLVrqIDP~~kLD~DV-EELLLeIADD----FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
+.+...++++..-....+++++ .+++.+..+. -|++++..|+.+|..++.++|+.+|+.-.+++
T Consensus 183 ~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 183 DVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 3444445555544444555554 3344333333 46789999999999999999999999988876
No 64
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=69.00 E-value=5.6 Score=36.35 Aligned_cols=68 Identities=7% Similarity=0.025 Sum_probs=47.3
Q ss_pred cCChHHHHHHHHhcCCCCCCCHH-HHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 431 LLGKRKIQDLVSQVDSQGKVDPE-VEDLLLEIADD----FIDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP~~kLD~D-VEELLLeIADD----FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
..+.+...++++..-....++++ ..+.|.+.++. -|+.++..|+..|..++.++|+.+||.-.|++..
T Consensus 187 ~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~ 259 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIM 259 (285)
T ss_dssp CCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHH
Confidence 34566666777665444444333 23445555554 4778899999999999999999999999998753
No 65
>1fh1_A NODF, nodulation protein F; ROOT nodulation factor, protein backbone fold, lipid binding protein; NMR {Rhizobium leguminosarum} SCOP: i.11.1.1
Probab=68.43 E-value=2.5 Score=34.09 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=12.7
Q ss_pred hhcCCCCccchhHHHHHhhcCCcccc
Q 007852 478 KHRKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 478 KHRKSdTLEvKDVQLhLERnWNI~IP 503 (587)
..-+-+.|++-++...||+.||+.||
T Consensus 39 ~dlg~DSl~~vel~~~lE~~fgi~i~ 64 (92)
T 1fh1_A 39 TSLGIDSLGLADVLWDLEQLYGIKIE 64 (92)
T ss_dssp -------CTTTTHHHHHHHC------
T ss_pred hhcCCChHHHHHHHHHHHHHhCCccC
Confidence 34467889999999999999999998
No 66
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=67.21 E-value=13 Score=39.09 Aligned_cols=51 Identities=12% Similarity=0.163 Sum_probs=42.6
Q ss_pred CCCCCCHHHHHHHHHHHH-------------HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 446 SQGKVDPEVEDLLLEIAD-------------DFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 446 P~~kLD~DVEELLLeIAD-------------DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
....+++++.+.|++.+. ..+.+++..|+.+|+.++++.|+.+||.-.+++
T Consensus 311 ~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 311 KIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp SSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 345799999998888763 457789999999999999999999999877754
No 67
>2o1e_A YCDH; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.60A {Bacillus subtilis}
Probab=66.44 E-value=4.1 Score=40.09 Aligned_cols=121 Identities=12% Similarity=0.176 Sum_probs=74.9
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCCccchhHHHHHhhcCCccccCC
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSF----ACNLAKHRKSSTLESKDILLHLEKNWHLTVPGF 505 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~----ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGF 505 (587)
-++......+++.|.. -.++||+-.+...+=++.|++.+-.. .-.+++.++...|...|.--||.|.||+.+-|+
T Consensus 135 Wldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yfa~~yGl~~~~~ 214 (312)
T 2o1e_A 135 WLSPVLAQKEVKNITAQIVKQDPDNKEYYEKNSKEYIAKLQDLDKLYRTTAKKAEKKEFITQHTAFGYLAKEYGLKQVPI 214 (312)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCEEEESSCTTHHHHHHTTCEEEEC
T ss_pred ccCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCEEEEECCchHHHHHHCCCeEEEe
Confidence 3455555566655522 23466677777777777777766543 334666666667889999999999999986554
Q ss_pred CccccccccCCCCcHHHHHHHHHHHHhhccCCcc----cccCCh--HHHHhhccCCCCc
Q 007852 506 SSEERNHQRKSLSSDVHSKRLEMIRALMEPSQSE----TITNDP--REMIRQGLGNPVG 558 (587)
Q Consensus 506 ssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~se----~~~~~~--~~~~~~g~~n~~~ 558 (587)
-. +.+-..+.+ ++|+.|.+.++..... +...+. -+.++..+|-+++
T Consensus 215 ~~--~~~~~eps~-----~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~e~g~~v~ 266 (312)
T 2o1e_A 215 AG--LSPDQEPSA-----ASLAKLKTYAKEHNVKVIYFEEIASSKVADTLASEIGAKTE 266 (312)
T ss_dssp SS--CCSSSCCCH-----HHHHHHHHHTTSSCCCEEECSSCCCHHHHHHHHHHTCCEEE
T ss_pred ec--cCCCCCCCH-----HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCcEE
Confidence 32 222233333 6777788888777662 122333 3556666665543
No 68
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=66.21 E-value=10 Score=38.98 Aligned_cols=94 Identities=11% Similarity=0.099 Sum_probs=61.3
Q ss_pred cCChHHHHHHHHhc--C-------CCCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhhhc--CCCCccchhHHHHHhh
Q 007852 431 LLGKRKIQDLVSQV--D-------SQGKVDPEVEDLLLEIADD---FIDSVTSFACNLAKHR--KSSTLESKDILLHLEK 496 (587)
Q Consensus 431 ILtKrKLqeLVrqI--D-------P~~kLD~DVEELLLeIADD---FVdsVvt~ACrLAKHR--KSdTLEvKDVQLhLER 496 (587)
.+++..+.++++.+ + ....|++++.+.|.++++- -+.++++.++.+|..+ +..+|+..||.-.|.+
T Consensus 164 ~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 164 SLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 45677777777655 1 3356999999999999763 4556777788888755 4567999999888865
Q ss_pred cCCccccCCCccccccccCCCCcHHHHHHHHHHHHhhccCCc
Q 007852 497 NWHLTVPGFSSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS 538 (587)
Q Consensus 497 nWNI~IPGFssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s 538 (587)
.- +. |.| ..+.|-.-+..+-|.|..+..
T Consensus 244 ~~----~~--------~dk--~gd~~yd~isal~ksirgsd~ 271 (447)
T 3pvs_A 244 RS----AR--------FDN--KGDRFYDLISALHKSVRGSAP 271 (447)
T ss_dssp CC----CC-------------CCHHHHHHHHHHHHHHHTTCH
T ss_pred hh----hc--------cCC--ccchHHHHHHHHHHHHhCCCH
Confidence 41 11 111 245566666666665655543
No 69
>2prs_A High-affinity zinc uptake system protein ZNUA; protein consists of two (beta/ALFA)4 domains, metal transport; 1.70A {Escherichia coli} PDB: 2osv_A 2ps0_A 2ps3_A 2ps9_A 2ogw_A 2xy4_A* 2xqv_A* 2xh8_A
Probab=65.95 E-value=4.4 Score=38.94 Aligned_cols=121 Identities=19% Similarity=0.164 Sum_probs=71.9
Q ss_pred cCChHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCCccchhHHHHHhhcCCccccCC
Q 007852 431 LLGKRKIQDLVSQVD-SQGKVDPEVEDLLLEIADDFIDSVTSF----ACNLAKHRKSSTLESKDILLHLEKNWHLTVPGF 505 (587)
Q Consensus 431 ILtKrKLqeLVrqID-P~~kLD~DVEELLLeIADDFVdsVvt~----ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGF 505 (587)
-++......+++.|. .-.++||+=.+...+=++.|+..+-.. ...+++.++...|...|.--||.|.||+.+-|+
T Consensus 119 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~ 198 (284)
T 2prs_A 119 WLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGH 198 (284)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCCEEEEESCCHHHHHHHTCCCCEE
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEECccHHHHHHHCCCeEeEe
Confidence 445555656665552 223466677777777777777765543 345666667778899999999999999986543
Q ss_pred CccccccccCCCCcHHHHHHHHHHHHhhccCCc-----cccc-CChHHHHhhccCCCCc
Q 007852 506 SSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETIT-NDPREMIRQGLGNPVG 558 (587)
Q Consensus 506 ssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~-~~~~~~~~~g~~n~~~ 558 (587)
- ++.+-+ .|+. ++|+.|.+.++.... |... ...-+.++.++|-+++
T Consensus 199 ~--~~~~~~--eps~---~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 250 (284)
T 2prs_A 199 F--TVNPEI--QPGA---QRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMG 250 (284)
T ss_dssp E--ESSTTS--CCCH---HHHHHHHHHHHHTTCCEEEECTTSCSHHHHHHTTTSCCEEE
T ss_pred e--ccCCCC--CCCH---HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeEE
Confidence 2 222222 2344 455555555555544 3322 2234555666666554
No 70
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=64.91 E-value=20 Score=34.07 Aligned_cols=69 Identities=13% Similarity=0.145 Sum_probs=53.3
Q ss_pred ccCChHHHHHHHHh----cCCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQ----VDSQGKVDPEVEDLLLEIAD---------DFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrq----IDP~~kLD~DVEELLLeIAD---------DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
.-++.+.+.++++. ......+++++.+.+.++++ -++..++..++.+|..++...++.+||.-.+++
T Consensus 213 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 213 PAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34567777777743 23335689999999999998 378899999999999888889999998877766
Q ss_pred cC
Q 007852 497 NW 498 (587)
Q Consensus 497 nW 498 (587)
..
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 71
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=62.95 E-value=15 Score=37.08 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=55.1
Q ss_pred cCChHHHHHHHHhcC--CCCCCCHHHHHHHHHHH-H---HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCc
Q 007852 431 LLGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIA-D---DFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHL 500 (587)
Q Consensus 431 ILtKrKLqeLVrqID--P~~kLD~DVEELLLeIA-D---DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI 500 (587)
-+++..+.+.++.+. .+..+++++.++|.+++ + ....++++.|..+|..++.++|+.+||.-.++.-+|.
T Consensus 365 ~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~ 440 (456)
T 2c9o_A 365 LYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDA 440 (456)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcCh
Confidence 457778887776543 24569999999999998 4 2566778888899999999999999999988775553
No 72
>3cx3_A Lipoprotein; zinc-binding, transport, lipid binding protein, metal binding protein; 2.40A {Streptococcus pneumoniae}
Probab=62.91 E-value=5.9 Score=38.12 Aligned_cols=121 Identities=15% Similarity=0.218 Sum_probs=70.9
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCCccchhHHHHHhhcCCccccCC
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSF----ACNLAKHRKSSTLESKDILLHLEKNWHLTVPGF 505 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~----ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGF 505 (587)
-++......+++.|.. -.++||+-.+...+=++.|+..+-.. ...+++.++...|...|.--||.|.||+.+-|+
T Consensus 122 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~ 201 (284)
T 3cx3_A 122 WLDPEKAGEEAQIIADKLSEVDSEHKETYQKNAQAFIKKAQELTKKFQPKFEKATQKTFVTQHTAFSYLAKRFGLNQLGI 201 (284)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCEEEEESCCHHHHHHTTCCEEEE
T ss_pred ccCHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHcCCEEeec
Confidence 3455555555555522 23466676677777777777765543 334666666778899999999999999986543
Q ss_pred CccccccccCCCCcHHHHHHHHHHHHhhccCCc-----cccc-CChHHHHhhccCCCCc
Q 007852 506 SSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETIT-NDPREMIRQGLGNPVG 558 (587)
Q Consensus 506 ssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~-~~~~~~~~~g~~n~~~ 558 (587)
- ++.+-..+.+ ++|+.|.+.++.... |... ...-+.++..+|-+++
T Consensus 202 ~--~~~~~~eps~-----~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 253 (284)
T 3cx3_A 202 A--GISPEQEPSP-----RQLTEIQEFVKTYKVKTIFTESNASSKVAETLVKSTGVGLK 253 (284)
T ss_dssp E--CSSTTCCCCS-----HHHHHHHHHHHHTTCCCEEECSSSCCHHHHHHHSSSSCCEE
T ss_pred c--CCCCCCCCCH-----HHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCeEE
Confidence 2 2332333333 455555555555444 3332 2233456666665543
No 73
>3gi1_A LBP, laminin-binding protein of group A streptococci; zinc-binding receptor, metal-binding, helical backbone, alpha/beta domains; 2.45A {Streptococcus pyogenes} PDB: 3hjt_A
Probab=61.91 E-value=3.9 Score=39.67 Aligned_cols=120 Identities=17% Similarity=0.221 Sum_probs=69.9
Q ss_pred CChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCCccchhHHHHHhhcCCccccCCC
Q 007852 432 LGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSF----ACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFS 506 (587)
Q Consensus 432 LtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~----ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFs 506 (587)
++.+....+++.|-. -.++||+-.+...+=++.|+..+-.. .-.+++.++...|...|.--||.|.||+.+-|+-
T Consensus 125 ldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~~ 204 (286)
T 3gi1_A 125 TDPVLAGEEAVNIAKELGRLDPKHKDSYTKNAKAFKKEAEQLTEEYTQKFKKVRSKTFVTQHTAFSYLAKRFGLKQLGIS 204 (286)
T ss_dssp GSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEEEESCCHHHHHHTTCEEEEEE
T ss_pred cCHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCchHHHHHHCCCeEeecc
Confidence 455555556555522 23466676676777777777766443 3346666666678889999999999999865432
Q ss_pred ccccccccCCCCcHHHHHHHHHHHHhhccCCc-----cccc-CChHHHHhhccCCCCc
Q 007852 507 SEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETIT-NDPREMIRQGLGNPVG 558 (587)
Q Consensus 507 sDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~-~~~~~~~~~g~~n~~~ 558 (587)
++.+-.. |+. ++|+.|.+.|+.... |... ...-+.++..+|-+++
T Consensus 205 --~~~~~~e--ps~---~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~la~~~g~~v~ 255 (286)
T 3gi1_A 205 --GISPEQE--PSP---RQLKEIQDFVKEYNVKTIFAEDNVNPKIAHAIAKSTGAKVK 255 (286)
T ss_dssp --CSCC-----CCH---HHHHHHHHHHHHTTCCEEEECTTSCTHHHHHHHHTTTCEEE
T ss_pred --ccCCCCC--CCH---HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHhCCeEE
Confidence 1221122 333 556666666665555 3222 2233556666776554
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=59.15 E-value=5.9 Score=35.88 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 433 GKRKIQDLVSQVDSQGKVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 433 tKrKLqeLVrqIDP~~kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
+.+...++++.......+++|+ .+.|.+..+.| +++++..|+.+|..++..+|+.+|+.-.|
T Consensus 187 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 187 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3344444555444445565554 44555555443 67889999999998888889999986554
No 75
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=59.15 E-value=9.8 Score=33.97 Aligned_cols=66 Identities=11% Similarity=0.068 Sum_probs=34.6
Q ss_pred CChHHHHHHHHhcCC--CCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 432 LGKRKIQDLVSQVDS--QGKVDPEV-EDLLLEIADD----FIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 432 LtKrKLqeLVrqIDP--~~kLD~DV-EELLLeIADD----FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.+.+...++++..-. ....++++ .+.|.+..+. -|..++..|+..|..++..+|+.+|+.-.|++.
T Consensus 177 p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 177 PTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 344444455543322 22333333 2444444333 477888999999999989999999999888874
No 76
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=57.80 E-value=15 Score=30.83 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 431 LLGKRKIQDLVSQVDS--QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP--~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
-+++..+.++++++-. +..+++++.+.|.+.++.-+..++...++++... ++|+.+||.-.+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 3556667777665422 3458999988888887765555555555554432 6899999877664
No 77
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=57.04 E-value=22 Score=31.92 Aligned_cols=64 Identities=16% Similarity=0.258 Sum_probs=38.2
Q ss_pred ccCChHHHHH-HHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcccc
Q 007852 430 QLLGKRKIQD-LVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 430 qILtKrKLqe-LVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IP 503 (587)
.|-+|+-|.+ ||+-|.+....+.+|.+-++++...|-+.. ++ ..+--.+.|+--.|++. |+.+|
T Consensus 92 eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f--------~~-~p~l~~i~~~Y~~Lk~~-G~~FP 156 (157)
T 1elk_A 92 LVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF--------RS-SPDLTGVVTIYEDLRRK-GLEFP 156 (157)
T ss_dssp HHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH--------TT-CTTCHHHHHHHHHHHHH-TCCCC
T ss_pred HHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc--------CC-CcchHHHHHHHHHHHHc-CCCCC
Confidence 3556777777 677776665556677777777777766542 11 11112255666666665 66665
No 78
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=57.01 E-value=25 Score=31.89 Aligned_cols=70 Identities=11% Similarity=0.205 Sum_probs=46.4
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCccc
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEE 509 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFssDE 509 (587)
.|-+|+-|++|++-+++ +.+++|.+-++++...|-+.. .++ .+--.++|+--.|++. |+.+|....+.
T Consensus 90 evas~~Fl~el~~l~~~--~~~~~Vk~kil~li~~W~~~f-------~~~--~~l~~i~~~Y~~Lk~~-G~~FP~~~~~~ 157 (163)
T 1x5b_A 90 EVCSRDFATEVRAVIKN--KAHPKVCEKLKSLMVEWSEEF-------QKD--PQFSLISATIKSMKEE-GITFPPAGSQT 157 (163)
T ss_dssp HHTSHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHHHHHT-------TTC--STTHHHHHHHHHHHTT-TCCCCCCSSCC
T ss_pred HHhhHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHh-------cCC--cccHHHHHHHHHHHHc-CCCCCCCCCCC
Confidence 45578888888887764 467888888888887776542 111 1112356777777776 88888876655
Q ss_pred cc
Q 007852 510 RN 511 (587)
Q Consensus 510 ir 511 (587)
..
T Consensus 158 ~~ 159 (163)
T 1x5b_A 158 SG 159 (163)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 79
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=55.82 E-value=43 Score=27.06 Aligned_cols=55 Identities=13% Similarity=0.039 Sum_probs=38.4
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHHHHHHH---------HHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 437 IQDLVSQVDSQGKVDPEVEDLLLEIADDF---------IDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 437 LqeLVrqIDP~~kLD~DVEELLLeIADDF---------VdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
|-++..+..-+ .|.+-..+.|.+..||| -.++|..||+.|...+.. ..+=|.-+|
T Consensus 4 ~~~~~e~~g~g-~ls~~e~e~i~~w~~~~~~~~~~~~~~~elI~~A~~~av~~~~~--~~~Yi~~IL 67 (83)
T 2i5u_A 4 IRSIWENNGFG-LMSSKTMTDFDYWISDFEKIGASQKEAEQLIVKAIEIAIDANAR--NYNYINAIL 67 (83)
T ss_dssp HHHHHHTTTSC-SCCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTCC--SHHHHHHHH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHcCCC--CHHHHHHHH
Confidence 44455544334 78888888889999988 789999999999877543 333333344
No 80
>1pq4_A Periplasmic binding protein component of AN ABC T uptake transporter; ZNUA, loop, metal-binding, metal binding protein; 1.90A {Synechocystis SP} SCOP: c.92.2.2 PDB: 2ov3_A 2ov1_A
Probab=55.54 E-value=6.6 Score=38.06 Aligned_cols=118 Identities=14% Similarity=0.160 Sum_probs=71.7
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCCccchhHHHHHhhcCCccccCC
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSF----ACNLAKHRKSSTLESKDILLHLEKNWHLTVPGF 505 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~----ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGF 505 (587)
-++......+++.|-. -.++||+-.+...+=++.|+..+-.. ...++..++...|..-|.--||.|.||+.+-|+
T Consensus 135 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~v~~H~af~Yf~~~yGl~~~~~ 214 (291)
T 1pq4_A 135 WLSPTLVKRQATTIAKELAELDPDNRDQYEANLAAFLAELERLNQELGQILQPLPQRKFIVFHPSWAYFARDYNLVQIPI 214 (291)
T ss_dssp GGCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSCCEEEESSCCCHHHHHHTTCEEEES
T ss_pred cCCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEECCchHHHHHHCCCEEeec
Confidence 3456666666665532 23466677777777788888776543 334555566667888999999999999987554
Q ss_pred CccccccccCCCCcHHHHHHHHHHHHhhccCCc-----cccc-CChHHHHhhccCCCC
Q 007852 506 SSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETIT-NDPREMIRQGLGNPV 557 (587)
Q Consensus 506 ssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~-~~~~~~~~~g~~n~~ 557 (587)
-..+ ..|+. ++|+.|.+.++.... |... ...-+.++.++|-++
T Consensus 215 ~~~~------~eps~---~~l~~l~~~ik~~~v~~If~e~~~~~~~~~~ia~~~g~~v 263 (291)
T 1pq4_A 215 EVEG------QEPSA---QELKQLIDTAKENNLTMVFGETQFSTKSSEAIAAEIGAGV 263 (291)
T ss_dssp CBTT------BCCCH---HHHHHHHHHHHTTTCCEEEEETTSCCHHHHHHHHHHTCEE
T ss_pred ccCC------CCCCH---HHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHcCCeE
Confidence 3322 23344 556666666665554 2222 223345556666544
No 81
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=54.75 E-value=5.9 Score=36.68 Aligned_cols=62 Identities=15% Similarity=0.152 Sum_probs=40.6
Q ss_pred ChHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 433 GKRKIQDLVSQVDSQGKVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 433 tKrKLqeLVrqIDP~~kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
+.+...++++.......+++|+ .+.|.+..+.| |++++..|+.+|..++..+|+.+|+.-.|
T Consensus 211 ~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 211 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 4444455555444445566555 44444444433 56889999999998888889999986554
No 82
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=54.60 E-value=40 Score=25.49 Aligned_cols=41 Identities=17% Similarity=0.258 Sum_probs=34.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 007852 435 RKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACN 475 (587)
Q Consensus 435 rKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACr 475 (587)
+.|+.|+--.+-...-.+|..++|=||.-+||.+++..|++
T Consensus 4 ~ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 4 KELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35788887766666777889999999999999999999986
No 83
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=53.76 E-value=21 Score=32.97 Aligned_cols=67 Identities=7% Similarity=-0.003 Sum_probs=50.4
Q ss_pred ccCChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIAD---DFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqID--P~~kLD~DVEELLLeIAD---DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
..++.+.+.++++.+- .+..+++++.+.|.+.++ ..+.+++..++.+|..++.+.|+..|+.-.++.
T Consensus 166 ~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 166 EYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 3456777777776653 245799999998888763 356677888888888888888999998877765
No 84
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=53.12 E-value=5 Score=32.72 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=33.1
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 456 DLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 456 ELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+.|.+.++.| |..||..|+..|-.|....|+.+|+.-.|++.
T Consensus 36 ~~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 36 RKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3355555555 67788999999999988999999999888874
No 85
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=51.88 E-value=6.3 Score=37.58 Aligned_cols=60 Identities=13% Similarity=-0.000 Sum_probs=38.9
Q ss_pred CChHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHH
Q 007852 432 LGKRKIQDLVSQVDS--QGKVDPEVEDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDIL 491 (587)
Q Consensus 432 LtKrKLqeLVrqIDP--~~kLD~DVEELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQ 491 (587)
.+.+...++++..-. ...++++..+.|.+.++.| |..++..|+..|..|..+.++.++|.
T Consensus 184 p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~~~~~ 249 (322)
T 3eie_A 184 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVS 249 (322)
T ss_dssp CCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEEEECC
T ss_pred CCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 344555555554422 2356788888888877764 66777788888877776666655553
No 86
>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} SCOP: c.92.2.2
Probab=51.37 E-value=13 Score=36.83 Aligned_cols=120 Identities=11% Similarity=0.163 Sum_probs=71.0
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHh--hhcCCCCccchhHHHHHhhcCCcccc
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFAC----NLA--KHRKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~AC----rLA--KHRKSdTLEvKDVQLhLERnWNI~IP 503 (587)
-++......+++.|.. -.++||+=.+...+=++.|++.+-...- .++ ++++...|...|.--||.|.||+.+-
T Consensus 147 Wldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~~~~~r~~v~~H~af~Yfa~~yGL~~~ 226 (321)
T 1xvl_A 147 WMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEI 226 (321)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEEEEESTTHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCEEEEECchHHHHHHHCCCeEE
Confidence 4466666666665522 2346667777777777888776654332 344 23444567788999999999999865
Q ss_pred CCCccccccccCCCCcHHHHHHHHHHHHhhccCCc-----ccccCChH--HHHhhccCCCCc
Q 007852 504 GFSSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETITNDPR--EMIRQGLGNPVG 558 (587)
Q Consensus 504 GFssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~~~~~--~~~~~g~~n~~~ 558 (587)
|+- .+.+-. .|+. ++|+.|.+.++.... |.. .+.+ +.++.++|-+++
T Consensus 227 ~~~--~~~~~~--eps~---~~l~~l~~~ik~~~v~~If~e~~-~~~~~~~~iA~e~g~~v~ 280 (321)
T 1xvl_A 227 YMW--PINAEQ--QFTP---KQVQTVIEEVKTNNVPTIFCEST-VSDKGQKQVAQATGARFG 280 (321)
T ss_dssp EEE--SSSSSC--SCCH---HHHHHHHHHHHTTTCSEEEEETT-SCSHHHHHHHTTTCCEEE
T ss_pred Eee--ccCCCC--CCCH---HHHHHHHHHHHHcCCcEEEEeCC-CChHHHHHHHHhcCCcee
Confidence 432 122222 2333 455666666666554 333 3333 567777776654
No 87
>2lte_A Specialized acyl carrier protein; APO protein, transferase; NMR {Pseudomonas aeruginosa}
Probab=56.51 E-value=3.2 Score=34.86 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=23.1
Q ss_pred hcCCCCccchhHHHHHhhcCCccccCC
Q 007852 479 HRKSSTLESKDILLHLEKNWHLTVPGF 505 (587)
Q Consensus 479 HRKSdTLEvKDVQLhLERnWNI~IPGF 505 (587)
--+-|.|++-++...||+.||+.||-.
T Consensus 54 dLGlDSL~~veL~~~lE~~fgi~i~~~ 80 (103)
T 2lte_A 54 DLAFDSLVVSELSLKLRKEFGVTGVDD 80 (103)
Confidence 346788999999999999999999853
No 88
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=50.22 E-value=27 Score=37.80 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=50.3
Q ss_pred cccCChHHHHHHHHhcC---CCCCCCHHHHHHHHHHHHHH---------------------HHHHHHHHHHHhhhcCCCC
Q 007852 429 NQLLGKRKIQDLVSQVD---SQGKVDPEVEDLLLEIADDF---------------------IDSVTSFACNLAKHRKSST 484 (587)
Q Consensus 429 nqILtKrKLqeLVrqID---P~~kLD~DVEELLLeIADDF---------------------VdsVvt~ACrLAKHRKSdT 484 (587)
..+++...|.+++..+. ....+++++++.|.++..+- ++.++..|..+||.|+++.
T Consensus 391 ~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~ 470 (506)
T 3f8t_A 391 TEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDD 470 (506)
T ss_dssp ---CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSE
T ss_pred CCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCC
Confidence 46788888887776554 25689999999999885543 2346778889999999999
Q ss_pred ccchhHHHHHh
Q 007852 485 LESKDILLHLE 495 (587)
Q Consensus 485 LEvKDVQLhLE 495 (587)
|+..||+..++
T Consensus 471 V~~eDV~~Ai~ 481 (506)
T 3f8t_A 471 VEPEDVDIAAE 481 (506)
T ss_dssp ECHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99999977664
No 89
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=50.16 E-value=28 Score=33.46 Aligned_cols=67 Identities=6% Similarity=0.193 Sum_probs=47.7
Q ss_pred ccCChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHH---HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 430 QLLGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIAD---DFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 430 qILtKrKLqeLVrqID--P~~kLD~DVEELLLeIAD---DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
...++..+.++++++- -+..+|+++.+.|.+.++ ..+.+++..+...|..++...|+..+|.-.|++
T Consensus 178 d~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 178 DFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp CCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4456777777776552 245688888777766543 235566677777777777788999999999987
No 90
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=49.65 E-value=76 Score=24.98 Aligned_cols=29 Identities=3% Similarity=-0.063 Sum_probs=15.2
Q ss_pred HHHHHHhhhcCCCCccchhHHHHHhhcCC
Q 007852 471 SFACNLAKHRKSSTLESKDILLHLEKNWH 499 (587)
Q Consensus 471 t~ACrLAKHRKSdTLEvKDVQLhLERnWN 499 (587)
..+++..-..++..|+..++.-.|...+|
T Consensus 91 ~~~F~~~D~d~~G~i~~~el~~~l~~~~~ 119 (153)
T 3ox6_A 91 RDAFREFDTNGDGEISTSELREAMRALLG 119 (153)
T ss_dssp HHHHHHHCTTCSSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHHhc
Confidence 33444444445556666666666655333
No 91
>3hh8_A Metal ABC transporter substrate-binding lipoprote; lipoprotein, metal binding, cell membrane, copper transport, iron; 1.87A {Streptococcus pyogenes serotype M1} SCOP: c.92.2.2 PDB: 1psz_A 3ztt_A
Probab=49.44 E-value=16 Score=35.51 Aligned_cols=121 Identities=10% Similarity=0.113 Sum_probs=70.3
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHhhhcC--CCCccchhHHHHHhhcCCcccc
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFAC----NLAKHRK--SSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~AC----rLAKHRK--SdTLEvKDVQLhLERnWNI~IP 503 (587)
-++......+++.|.. -.++||+-.+...+=++.|+..+-...- .+++..+ ...+...|.--||.|.||+.+-
T Consensus 126 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yf~~~yGl~~~ 205 (294)
T 3hh8_A 126 WLNLENGIIYSKNIAKQLIAKDPKNKETYEKNLKAYVAKLEKLDKEAKSKFDAIAENKKLIVTSEGCFKYFSKAYGVPSA 205 (294)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCGGGCCEEEEESCCHHHHHHHTCCEE
T ss_pred eCCHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCcEEEEECChHHHHHHHcCCcee
Confidence 3455666666655532 2346667777777777777777655432 3454443 5557778988899999999864
Q ss_pred CCCccccccccCCCCcHHHHHHHHHHHHhhccCCc-----cccc-CChHHHHhhccCCCCc
Q 007852 504 GFSSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETIT-NDPREMIRQGLGNPVG 558 (587)
Q Consensus 504 GFssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~-~~~~~~~~~g~~n~~~ 558 (587)
|+ .++.+-. .|+. ++|+.|.+.++.... |... ...-+.++.++|-+++
T Consensus 206 ~~--~~~~~~~--eps~---~~l~~l~~~ik~~~v~~if~e~~~~~~~~~~ia~~~g~~v~ 259 (294)
T 3hh8_A 206 YI--WEINTEE--EGTP---DQISSLIEKLKVIKPSALFVESSVDRRPMETVSKDSGIPIY 259 (294)
T ss_dssp EE--ESSCCSC--CCCH---HHHHHHHHHHHHSCCSCEEEETTSCSHHHHHHHHHHCCCEE
T ss_pred ec--cccCCCC--CCCH---HHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHhCCcEE
Confidence 42 2222222 2344 455555555555544 3222 2223566777777765
No 92
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=47.58 E-value=19 Score=35.28 Aligned_cols=50 Identities=10% Similarity=-0.015 Sum_probs=33.7
Q ss_pred ChHHHHHHHHhcCCC--CCCCHHHHHHHHHHHHHH----HHHHHHHHHHHhhhcCC
Q 007852 433 GKRKIQDLVSQVDSQ--GKVDPEVEDLLLEIADDF----IDSVTSFACNLAKHRKS 482 (587)
Q Consensus 433 tKrKLqeLVrqIDP~--~kLD~DVEELLLeIADDF----VdsVvt~ACrLAKHRKS 482 (587)
+.+...++++.+-.. ..++++..+.|.+.++.| |+.++..|+..|-+|..
T Consensus 218 ~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~ 273 (355)
T 2qp9_X 218 DLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQ 273 (355)
T ss_dssp CHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444455555544222 246788888888888875 77888888888887754
No 93
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=46.38 E-value=13 Score=39.48 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=40.5
Q ss_pred CCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 449 KVDPEVEDLLLEIADD------------------FIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 449 kLD~DVEELLLeIADD------------------FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
.|++++.++|.++..+ -+++++..|..+||.+++++|+.+||.-+++
T Consensus 521 ~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~ 585 (595)
T 3f9v_A 521 KITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAIN 585 (595)
T ss_dssp CCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHH
Confidence 7889999999888654 2678999999999999999999999987764
No 94
>3mfq_A TROA, high-affinity zinc uptake system protein ZNUA; metal binding protein; 2.60A {Streptococcus suis} SCOP: c.92.2.0
Probab=45.88 E-value=22 Score=34.38 Aligned_cols=74 Identities=8% Similarity=0.165 Sum_probs=50.8
Q ss_pred cCChHHHHHHHHhc-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHhhh--cCCCCccchhHHHHHhhcCCcccc
Q 007852 431 LLGKRKIQDLVSQV-DSQGKVDPEVEDLLLEIADDFIDSVTSFAC----NLAKH--RKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 431 ILtKrKLqeLVrqI-DP~~kLD~DVEELLLeIADDFVdsVvt~AC----rLAKH--RKSdTLEvKDVQLhLERnWNI~IP 503 (587)
-++......+++.| |.-.++||+-.+...+=++.|+..+-...- .+++. ++..-|..-|.--||.|.||+.+-
T Consensus 106 Wldp~~~~~~a~~I~~~L~~~dP~~a~~y~~N~~~~~~~L~~ld~~~~~~l~~~~~~~~~~vt~H~af~Y~~~~yGl~~~ 185 (282)
T 3mfq_A 106 WFSIPLYKSAVAVASEELQKLLPAKAEMIQKNTEKYQAQLDDLHAWVEKELSVIPKESRYLVTPHDAFNYFAASYDFTLY 185 (282)
T ss_dssp GGSHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCEEECSSSCCHHHHHHTTCEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCcEEEEECchHHHHHHHCCCeEe
Confidence 45666777777776 334578888888888888888887755433 34543 223335567888899999999854
Q ss_pred C
Q 007852 504 G 504 (587)
Q Consensus 504 G 504 (587)
|
T Consensus 186 ~ 186 (282)
T 3mfq_A 186 A 186 (282)
T ss_dssp C
T ss_pred c
Confidence 3
No 95
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=45.46 E-value=21 Score=32.50 Aligned_cols=49 Identities=8% Similarity=0.002 Sum_probs=30.4
Q ss_pred CCCCHHHHHHHHHHHHH-----------HHHHHHHHHHHH-----hhhcCC-CCccchhHHHHHhh
Q 007852 448 GKVDPEVEDLLLEIADD-----------FIDSVTSFACNL-----AKHRKS-STLESKDILLHLEK 496 (587)
Q Consensus 448 ~kLD~DVEELLLeIADD-----------FVdsVvt~ACrL-----AKHRKS-dTLEvKDVQLhLER 496 (587)
..+|+++.+.|.+.+.. -+.++++.++.- +...+. .+|+.+||.-+|++
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 36899999999888743 245555555532 221121 14788888777765
No 96
>2l4b_A Acyl carrier protein; infectious disease, human granulocytic anaplasmosis, ssgcid, structural genomics; NMR {Anaplasma phagocytophilum}
Probab=45.26 E-value=5.8 Score=31.17 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=23.0
Q ss_pred HhhhcCCCCccchhHHHHHhhcCCccccC
Q 007852 476 LAKHRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 476 LAKHRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
|-..-+-+.|++-++...||+.||+.||-
T Consensus 37 l~~dlglDSl~~vel~~~lE~~fgi~i~~ 65 (88)
T 2l4b_A 37 LAKDFNLDSLDFVDLIMSLEERFSLEISD 65 (88)
T ss_dssp TTTTTTCCHHHHHHHHHHHHHHTTCCCCH
T ss_pred hhhccCCcHHHHHHHHHHHHHHHCCCcCH
Confidence 33345667788889999999999999873
No 97
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=44.73 E-value=42 Score=31.30 Aligned_cols=59 Identities=15% Similarity=0.105 Sum_probs=48.8
Q ss_pred cCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhH
Q 007852 431 LLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDI 490 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDV 490 (587)
|++=.++.+|.|.... .-+|++=.+-+.+++++=+.|...-|-.-||.-+.++++..|+
T Consensus 2 vm~~~~~e~lFR~aa~-LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG-LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHC-CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 4566789999987654 5566665566889999999999999999999999999998886
No 98
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=44.53 E-value=21 Score=31.53 Aligned_cols=54 Identities=20% Similarity=0.342 Sum_probs=23.7
Q ss_pred HHHHHhcCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCC---cccc
Q 007852 438 QDLVSQVDSQGKVDPEVE----DLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWH---LTVP 503 (587)
Q Consensus 438 qeLVrqIDP~~kLD~DVE----ELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWN---I~IP 503 (587)
.+++..+|- |++++ |+|.+|||-+.. .|.+| +-+..++-++...|-+.|+ +.||
T Consensus 12 ~~~~~~l~~----~~~~~~~~Pe~L~el~~~ig~-------~L~~~-Gi~~~~~ie~~~~L~~~~gG~~iYIP 72 (129)
T 1rr7_A 12 DTILAHLDN----PAEDTSRFPALLAELNDLLRG-------ELSRL-GVDPAHSLEIVVAICKHLGGGQVYIP 72 (129)
T ss_dssp -------------------CHHHHHHHHHHHHHH-------HHHHT-SSCTTSHHHHHHHHHHHHCSSCCCCC
T ss_pred hHHHHHhcC----hHHHHHHhHHHHHHHHHHHHH-------HHHHc-CCCHHHHHHHHHHHHHHHCCeeEEee
Confidence 556666665 66666 777777775544 44454 4343444477777777776 5555
No 99
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=44.30 E-value=61 Score=25.04 Aligned_cols=65 Identities=11% Similarity=0.166 Sum_probs=41.2
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIA--DDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIA--DDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.-+++..|.++++.+|.+..|+-+ |++.-+. .+- ..-+..++++.-..++..|+.+|+.-.|.+.
T Consensus 5 ~~~~~~e~~~~~~~~d~~g~i~~~--eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (109)
T 1bu3_A 5 GILADADVAAALKACEAADSFNYK--AFFAKVGLTAKS-ADDIKKAFFVIDQDKSGFIEEDELKLFLQVF 71 (109)
T ss_dssp CSSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTGGGSC-HHHHHHHHHHHCTTCSSSEEHHHHHTHHHHH
T ss_pred ccCCHHHHHHHHHHhCCCCcCcHH--HHHHHHHcChhh-HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 347889999999999977777744 2222111 111 2234455555555667778888887777653
No 100
>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC trans binding protein; 1.80A {Treponema pallidum} SCOP: c.92.2.2 PDB: 1k0f_A
Probab=43.45 E-value=8.5 Score=37.89 Aligned_cols=101 Identities=9% Similarity=0.106 Sum_probs=60.5
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHH----HHHHhhhc--CCCCccchhHHHHHhhcCCcccc
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSF----ACNLAKHR--KSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~----ACrLAKHR--KSdTLEvKDVQLhLERnWNI~IP 503 (587)
-++......+++.|.. -.++||+=.+...+=++.|++.+-.. .-.+++.. +...|...|.--||.|.||+.+-
T Consensus 140 Wldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~N~~~~~~~L~~Ld~~~~~~l~~~~~~~~~~v~~H~af~Yfa~~yGl~~~ 219 (313)
T 1toa_A 140 WFDVKLWSYSVKAVYESLCKLLPGKTREFTQRYQAYQQQLDKLDAYVRRKAQSLPAERRVLVTAHDAFGYFSRAYGFEVK 219 (313)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCGGGCEEEEEESCCHHHHHHHTCEEE
T ss_pred eCCHHHHHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccCCEEEEECCcHHHHHHHCCCeEE
Confidence 3466666666655532 23466677777777777777665543 23455433 55678889999999999999865
Q ss_pred CCCccccccccCCCCcHHHHHHHHHHHHhhccCCc
Q 007852 504 GFSSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS 538 (587)
Q Consensus 504 GFssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s 538 (587)
|+ .++.+-. .|+. ++|+.|.+.++....
T Consensus 220 ~~--~~~~~~~--eps~---~~l~~l~~~ik~~~v 247 (313)
T 1toa_A 220 GL--QGVSTAS--EASA---HDMQELAAFIAQRKL 247 (313)
T ss_dssp EE--ECSSCSS--CCCH---HHHHHHHHHHHHTTC
T ss_pred Ee--eccCCCC--CCCH---HHHHHHHHHHHHcCC
Confidence 43 2222222 2344 455555555555544
No 101
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=42.75 E-value=9.6 Score=40.14 Aligned_cols=65 Identities=14% Similarity=0.162 Sum_probs=46.1
Q ss_pred ChHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 433 GKRKIQDLVSQVDSQGKVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 433 tKrKLqeLVrqIDP~~kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+.+...++++..-....+++|| .+.|....+.| +++++..|+.+|..++...|+.+|+.-.+++-
T Consensus 202 d~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 202 DVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp CHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 4444455666554455677666 45555554444 56889999999998888899999999998874
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=42.45 E-value=39 Score=28.44 Aligned_cols=60 Identities=17% Similarity=0.183 Sum_probs=38.9
Q ss_pred cCChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHH---HHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 431 LLGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIADDFI---DSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 431 ILtKrKLqeLVrqID--P~~kLD~DVEELLLeIADDFV---dsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
-++++.+.++++.+- .+..+++++.+.|.+.++..+ ..++..++..++ ++|+.+||.-.|
T Consensus 184 ~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~----~~i~~~~v~~~~ 248 (250)
T 1njg_A 184 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGD----GQVSTQAVSAML 248 (250)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTT----SSBCHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccC----ceecHHHHHHHh
Confidence 356777777776542 345789998888888887543 444455544432 378888876554
No 103
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=42.40 E-value=81 Score=24.26 Aligned_cols=65 Identities=12% Similarity=0.175 Sum_probs=40.7
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIA--DDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIA--DDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.-+++..|.++++.+|.+..|+-+ |++.-+. ++- ..-+..++++.-..++..|+.+|+.-.|.+.
T Consensus 5 ~~~t~~e~~~~~~~~d~~g~i~~~--ef~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 71 (110)
T 1pva_A 5 DLLKADDIKKALDAVKAEGSFNHK--KFFALVGLKAMS-ANDVKKVFKAIDADASGFIEEEELKFVLKSF 71 (110)
T ss_dssp HHSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTCTTSC-HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred ccCCHHHHHHHHHhcCCCCcCcHH--HHHHHHccCcch-HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 347889999999999977777743 3322221 111 2234455555555666778888887777653
No 104
>1dv5_A APO-DCP, APO-D-alanyl carrier protein; 3-helix bundle, transport protein; NMR {Lactobacillus casei} SCOP: a.28.1.3 PDB: 1hqb_A
Probab=41.73 E-value=5.7 Score=31.15 Aligned_cols=23 Identities=17% Similarity=0.417 Sum_probs=20.2
Q ss_pred CCCccchhHHHHHhhcCCccccC
Q 007852 482 SSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 482 SdTLEvKDVQLhLERnWNI~IPG 504 (587)
-+.|++-++...||+.||+.||-
T Consensus 36 lDSl~~velv~~lE~~fgi~i~~ 58 (80)
T 1dv5_A 36 LDSMGTVQLLLELQSQFGVDAPV 58 (80)
T ss_dssp CCSHHHHHHHHHHTTTSCCCCCC
T ss_pred cChHHHHHHHHHHHHHhCCcCCH
Confidence 67788888899999999999983
No 105
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=41.57 E-value=59 Score=25.02 Aligned_cols=66 Identities=12% Similarity=0.110 Sum_probs=41.2
Q ss_pred cCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 431 LLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
-+++..|.+|++.+|.+..|+-+---.++.+..+- ...+..++++.-..+...|+.+|+.-.|.+.
T Consensus 5 ~~t~~e~~~~~~~~d~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (109)
T 1rwy_A 5 LLSAEDIKKAIGAFTAADSFDHKKFFQMVGLKKKS-ADDVKKVFHILDKDKSGFIEEDELGSILKGF 70 (109)
T ss_dssp HSCHHHHHHHHHTTCSTTCCCHHHHHHHHTGGGSC-HHHHHHHHHHHSTTCSSEECHHHHHTHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCcEeHHHHHHHHhcCcch-HHHHHHHHHHHCCCCCCeEcHHHHHHHHHHH
Confidence 46889999999999977777644211111111111 2334455565555667778888888777764
No 106
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=40.85 E-value=30 Score=33.86 Aligned_cols=65 Identities=11% Similarity=0.057 Sum_probs=37.7
Q ss_pred CChHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHhhhc------------CCCCccchhHHHH
Q 007852 432 LGKRKIQDLVSQVDS--QGKVDPEVEDLLLEIADDFID----SVTSFACNLAKHR------------KSSTLESKDILLH 493 (587)
Q Consensus 432 LtKrKLqeLVrqIDP--~~kLD~DVEELLLeIADDFVd----sVvt~ACrLAKHR------------KSdTLEvKDVQLh 493 (587)
.+.+...++++.+-. ...+++++.+.|.+.++.|.. .++..|+..|..+ ....|+.+|+.-+
T Consensus 282 p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~a 361 (389)
T 3vfd_A 282 PNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTES 361 (389)
T ss_dssp CCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHH
Confidence 455555566654422 356888888888888777554 4444444444443 2234666666666
Q ss_pred Hhh
Q 007852 494 LEK 496 (587)
Q Consensus 494 LER 496 (587)
|++
T Consensus 362 l~~ 364 (389)
T 3vfd_A 362 LKK 364 (389)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 107
>2kwl_A ACP, acyl carrier protein; structural genomics, seattle structura genomics center for infectious disease, ssgcid, lipid bindi protein; NMR {Borrelia burgdorferi}
Probab=40.31 E-value=7.3 Score=30.16 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=21.9
Q ss_pred hcCCCCccchhHHHHHhhcCCccccC
Q 007852 479 HRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 479 HRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
.-+-+.|++-++...||+.||+.||-
T Consensus 38 dlG~DSl~~vel~~~le~~fgi~i~~ 63 (84)
T 2kwl_A 38 DLNADSLDIYELLYLLEEAFDDKIPE 63 (84)
T ss_dssp TSSSCHHHHHHHHHHHHHHHTCCTTT
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCcCH
Confidence 34667788889999999999999884
No 108
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=39.82 E-value=29 Score=29.29 Aligned_cols=49 Identities=16% Similarity=0.298 Sum_probs=35.3
Q ss_pred HHHHHHhcCC-CCCCCHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhcCCCCccc
Q 007852 437 IQDLVSQVDS-QGKVDPEVEDLLLEIA-------DDFIDSVTSFACNLAKHRKSSTLES 487 (587)
Q Consensus 437 LqeLVrqIDP-~~kLD~DVEELLLeIA-------DDFVdsVvt~ACrLAKHRKSdTLEv 487 (587)
+++|..++|. +...+++|.|=|.+|+ ||||++.+.|++.. |...=|++.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~~~e~V~ew~Afs~s~--~~~~lt~~~ 61 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTST--HKVGLTSEI 61 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCCHHHHHHHHTTHHHHT--TCCCCCTTT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCCCCHHH
Confidence 4556666555 4467778999999885 99999999999984 544444443
No 109
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=39.26 E-value=25 Score=32.29 Aligned_cols=65 Identities=17% Similarity=0.228 Sum_probs=41.1
Q ss_pred ChHHHHHHHHhc--CCCCCCCHHHHHHHHHHHH-----------HHHHHHHHHHHHHhhhc----CCCCccchhHHHHHh
Q 007852 433 GKRKIQDLVSQV--DSQGKVDPEVEDLLLEIAD-----------DFIDSVTSFACNLAKHR----KSSTLESKDILLHLE 495 (587)
Q Consensus 433 tKrKLqeLVrqI--DP~~kLD~DVEELLLeIAD-----------DFVdsVvt~ACrLAKHR----KSdTLEvKDVQLhLE 495 (587)
++..+.++++.+ .....+++++.+.|.++++ ..+.++++.+|..+..| +.+.++..|+.....
T Consensus 205 ~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~~i~~ 284 (309)
T 3syl_A 205 SDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLFTASSGPLDARALSTIAE 284 (309)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHHEECH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHhhccH
Confidence 445556665443 2356799999999998854 35667888888766665 446677777654444
Q ss_pred hc
Q 007852 496 KN 497 (587)
Q Consensus 496 Rn 497 (587)
..
T Consensus 285 ~d 286 (309)
T 3syl_A 285 ED 286 (309)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 110
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=39.23 E-value=52 Score=30.13 Aligned_cols=67 Identities=15% Similarity=0.277 Sum_probs=48.1
Q ss_pred ccCChHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccc--cC
Q 007852 430 QLLGKRKIQDLVSQVDSQ---GKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTV--PG 504 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~---~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~I--PG 504 (587)
.|-+|+-|.+|++-|.+. ...+.+|.+-++++...|-+..- + ...++|+--.|++. |+.+ |.
T Consensus 88 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~-------~-----~~~i~~~y~~Lk~~-G~~f~~P~ 154 (171)
T 1juq_A 88 EVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP-------E-----EAKIKDAYHMLKRQ-GIVQSDPP 154 (171)
T ss_dssp HHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT-------T-----CHHHHHHHHHHHHT-TSCSSCCC
T ss_pred HHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHcC-------C-----CcHHHHHHHHHHHC-CCCCCCCC
Confidence 466888889999988764 35788999999999888876531 1 12478887777776 6665 77
Q ss_pred CCccc
Q 007852 505 FSSEE 509 (587)
Q Consensus 505 FssDE 509 (587)
+..|+
T Consensus 155 ~~~~~ 159 (171)
T 1juq_A 155 IPVDR 159 (171)
T ss_dssp BCCCT
T ss_pred CCccc
Confidence 66444
No 111
>3h7c_X Agmatine deiminase; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; HET: MSE 211 1PE; 1.50A {Arabidopsis thaliana} SCOP: d.126.1.6 PDB: 1vkp_A* 2q3u_A* 3h7k_A*
Probab=38.78 E-value=15 Score=38.20 Aligned_cols=68 Identities=19% Similarity=0.273 Sum_probs=50.1
Q ss_pred HHHHHHHHhhhcCCCCccchhHHHHHhhcCC----cccc-CCCccc-c----cc-----------c-cCCCCcHHHHHHH
Q 007852 469 VTSFACNLAKHRKSSTLESKDILLHLEKNWH----LTVP-GFSSEE-R----NH-----------Q-RKSLSSDVHSKRL 526 (587)
Q Consensus 469 Vvt~ACrLAKHRKSdTLEvKDVQLhLERnWN----I~IP-GFssDE-i----r~-----------y-rK~~pTeaHkQRM 526 (587)
+++..|.|-++|+-. +.-.+|.-.|++.+| ||+| |+-.|| - .. + .-..+.+.|-.++
T Consensus 175 ltTe~cLLn~nRNP~-lsk~eIE~~L~~~LGv~kvIWL~~Gl~gDddTdgHID~larFv~pg~Vl~~~~~d~~dp~y~~~ 253 (383)
T 3h7c_X 175 LVTEECLLNKNRNPH-MSKEQIEEELKKYLGVQSFIWLPRGLYGDEDTNGHIDNMCCFARPGVVLLSWTDDETDPQYERS 253 (383)
T ss_dssp EEEHHHHTCTTTCTT-SCHHHHHHHHHHHHCCCEEEEESCCCTTCGGGTCCGGGTEEEEETTEEEEEECCCTTSHHHHHH
T ss_pred EEEhhhccCCCCCCC-CCHHHHHHHHHHHhCCcEEEEeCCCcCCCCCcCcceeeeEEecCCCEEEEEccCCCCCcCHHHH
Confidence 457899999999976 899999999999999 6889 776653 1 01 1 1123556677888
Q ss_pred HHHHHhhccCC
Q 007852 527 EMIRALMEPSQ 537 (587)
Q Consensus 527 AlIRK~m~ss~ 537 (587)
..+.+.+++..
T Consensus 254 ~~~~~~L~~~t 264 (383)
T 3h7c_X 254 VEALSVLSNSI 264 (383)
T ss_dssp HHHHHHHHTCB
T ss_pred HHHHHHHHhhh
Confidence 88888777654
No 112
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=38.01 E-value=37 Score=32.33 Aligned_cols=61 Identities=15% Similarity=0.055 Sum_probs=52.0
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhH
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDI 490 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDV 490 (587)
..|++=.++.+|.|.... .-+|++=.+-+.+++++=+.|.+.-|-.-||.-+.++++..|+
T Consensus 24 m~vmg~~kferlFR~aag-LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 24 LRPKGFDKLDHYFRTELD-IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp TSCTTHHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HhcCChHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 458899999999998654 5667776667889999999999999999999999999988885
No 113
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=37.01 E-value=27 Score=32.71 Aligned_cols=66 Identities=5% Similarity=0.020 Sum_probs=48.6
Q ss_pred cCChHHHHHHHHhcCC--CCCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 431 LLGKRKIQDLVSQVDS--QGKVDPEVEDLLLEIADD---FIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP--~~kLD~DVEELLLeIADD---FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
.++.+.+.++++.+-. ...+++++.+.|.+.... .+.+++..++.+|..++.+.++..|+.-.+++
T Consensus 183 ~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 183 FYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp CCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 3456666676665532 345889988888875443 46677888888898888889999999888876
No 114
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=36.98 E-value=57 Score=29.16 Aligned_cols=49 Identities=16% Similarity=0.280 Sum_probs=33.1
Q ss_pred hHHHHHHHHhcCCCCCCCHH-----------HHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007852 434 KRKIQDLVSQVDSQGKVDPE-----------VEDLLLEIADDFIDSVTSFACNLAKHRKS 482 (587)
Q Consensus 434 KrKLqeLVrqIDP~~kLD~D-----------VEELLLeIADDFVdsVvt~ACrLAKHRKS 482 (587)
.++|.++++.+.....||+. -.|++.+|.+.|++++-..-..|.+.-..
T Consensus 7 ~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~ 66 (153)
T 3us6_A 7 RRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQ 66 (153)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35677777777666677742 23577888899999987766666555433
No 115
>2zyc_A Peptidoglycan hydrolase FLGJ; 1.74A {Sphingomonas SP} PDB: 3k3t_A
Probab=35.86 E-value=22 Score=32.81 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcc
Q 007852 461 IADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 461 IADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
|.++||+.+...|.+.+|.-+-. ..+-=.+-.||-.||-+
T Consensus 1 ~~~~FI~~~~~~A~~~~~~~gI~-~sv~lAQA~LESgwG~S 40 (170)
T 2zyc_A 1 MAQAFVDATWPQAAKAAQSLGVP-AHFLVAQAALETGWGKS 40 (170)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTSC-HHHHHHHHHHHHTTTTT
T ss_pred CHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHcCCCCC
Confidence 46899999999999999987765 23333366789888754
No 116
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=35.53 E-value=60 Score=25.04 Aligned_cols=65 Identities=12% Similarity=0.084 Sum_probs=40.7
Q ss_pred CChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 432 LGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+++..|.+|++.+|.+..|+-+---.++.+..+ -...+..+.++.-..+...|+.+|+.-.|.+.
T Consensus 6 ~~~~e~~~l~~~~d~~g~i~~~eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 2pvb_A 6 LKDADVAAALAACSAADSFKHKEFFAKVGLASK-SLDDVKKAFYVIDQDKSGFIEEDELKLFLQNF 70 (108)
T ss_dssp SCHHHHHHHHHHTCSTTCCCHHHHHHHHTGGGS-CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGT
T ss_pred CCHHHHHHHHHHhCCCCcCcHHHHHHHHhCChh-HHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 789999999999997777775422112211111 12334555565555667778888887777653
No 117
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=35.48 E-value=68 Score=28.16 Aligned_cols=45 Identities=24% Similarity=0.373 Sum_probs=26.2
Q ss_pred hHHHHHHHHhcCCCCCCCHHH------------HHHHHHHHHHHHHHHHHHHHHHhh
Q 007852 434 KRKIQDLVSQVDSQGKVDPEV------------EDLLLEIADDFIDSVTSFACNLAK 478 (587)
Q Consensus 434 KrKLqeLVrqIDP~~kLD~DV------------EELLLeIADDFVdsVvt~ACrLAK 478 (587)
++.|.++++.+.....||++. ++++.+|.+.|++++-..--.|.+
T Consensus 7 ~~~~~~~~~~~~~~~~lD~~~~~L~~L~~~~~~~~~~~elv~~Fl~d~~~~l~~L~~ 63 (149)
T 1yvi_A 7 RDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIAT 63 (149)
T ss_dssp HHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccccHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777776666777551 244556666666666544444433
No 118
>2cgq_A Acyl carrier protein ACPA; RV0033, protein transport, phosphopant; 1.83A {Mycobacterium tuberculosis}
Probab=35.40 E-value=2.6 Score=36.47 Aligned_cols=29 Identities=14% Similarity=0.277 Sum_probs=23.3
Q ss_pred HHhhhcCCCCccchhHHHHHhhcCCcccc
Q 007852 475 NLAKHRKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 475 rLAKHRKSdTLEvKDVQLhLERnWNI~IP 503 (587)
.|-.--+-|.|++-++...||+.||+.||
T Consensus 50 ~l~~dLGlDSLd~veLi~~LEe~FgI~I~ 78 (113)
T 2cgq_A 50 VLVDDLGFDSLKLFQLITELEDEFDIAIS 78 (113)
T ss_dssp BTTTTTCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred chhhhcCCCHHHHHHHHHHHHHHhCCCcC
Confidence 33334567788889999999999999988
No 119
>3gzm_A Acyl carrier protein; helix bundle, phosphopantetheine, fatty acid biosynthesis, L synthesis, transit peptide, biosynthetic protein; HET: PNS; 1.80A {Plasmodium falciparum} SCOP: a.28.1.0 PDB: 3gzl_A* 2fq0_A* 2fq2_A*
Probab=35.32 E-value=7.7 Score=30.01 Aligned_cols=27 Identities=19% Similarity=0.481 Sum_probs=22.0
Q ss_pred hhcCCCCccchhHHHHHhhcCCccccC
Q 007852 478 KHRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 478 KHRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
..-+-+.|++-++...||+.||+.||-
T Consensus 33 ~dlg~DSl~~vel~~~le~~fgi~i~~ 59 (81)
T 3gzm_A 33 KDLGADSLDLVELIMALEEKFNVTISD 59 (81)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred hhcCCCHHHHHHHHHHHHHHHCCCcCH
Confidence 344667788889999999999999873
No 120
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=35.19 E-value=3.9 Score=37.19 Aligned_cols=32 Identities=13% Similarity=0.158 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 465 FIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 465 FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
-|.+++..|+.+|..++.+.|+.+|+.-.+++
T Consensus 221 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 252 (268)
T 2r62_A 221 DLANIINEAALLAGRNNQKEVRQQHLKEAVER 252 (268)
T ss_dssp HHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTT
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHH
Confidence 36789999999999888889999997655554
No 121
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=35.04 E-value=25 Score=32.68 Aligned_cols=64 Identities=16% Similarity=0.093 Sum_probs=41.2
Q ss_pred CChHHHHHHHHhc--CCCCCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhhhcCCC-CccchhHHHHHh
Q 007852 432 LGKRKIQDLVSQV--DSQGKVDPEVEDLLLEIADDFIDSVTS---FACNLAKHRKSS-TLESKDILLHLE 495 (587)
Q Consensus 432 LtKrKLqeLVrqI--DP~~kLD~DVEELLLeIADDFVdsVvt---~ACrLAKHRKSd-TLEvKDVQLhLE 495 (587)
++...+.+.++.+ ..+..+|+++.+.|.++++.-+..++. .++.++..++.+ .|+.+||.-.+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 192 LDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 4555666666554 234579999999999998755555444 444444433333 688899876665
No 122
>3ujp_A Mn transporter subunit; manganese binding protein, metal binding protein; 2.70A {Synechocystis SP} PDB: 1xvl_A 3v63_A
Probab=34.71 E-value=26 Score=34.58 Aligned_cols=119 Identities=10% Similarity=0.144 Sum_probs=67.5
Q ss_pred cCChHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHH----Hhhh--cCCCCccchhHHHHHhhcCCcccc
Q 007852 431 LLGKRKIQDLVSQVDS-QGKVDPEVEDLLLEIADDFIDSVTSFACN----LAKH--RKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP-~~kLD~DVEELLLeIADDFVdsVvt~ACr----LAKH--RKSdTLEvKDVQLhLERnWNI~IP 503 (587)
-++......+++.|-. -.++||+=.+...+=++.|+..+-...-. |++. ++...|...|.--||.|.||+.+-
T Consensus 133 Wldp~n~~~~a~~I~~~L~~~DP~~a~~Y~~Na~~~~~~L~~Ld~~~~~~l~~~p~~~~~~v~~H~af~Yfa~~yGl~~~ 212 (307)
T 3ujp_A 133 WMSPRNALVYVENIRQAFVELDPDNAKYYNANAAVYSEQLKAIDRQLGADLEQVPANQRFLVSCEGAFSYLARDYGMEEI 212 (307)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGCEEEEEESTTHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCEEEEECchHHHHHHHCCCcEE
Confidence 3466666666665532 23466676777777777777776554333 3432 334456678999999999999864
Q ss_pred CCCccccccccCCCCcHHHHHHHHHHHHhhccCCc-----ccccCChH--HHHhhccCCCC
Q 007852 504 GFSSEERNHQRKSLSSDVHSKRLEMIRALMEPSQS-----ETITNDPR--EMIRQGLGNPV 557 (587)
Q Consensus 504 GFssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~s-----e~~~~~~~--~~~~~g~~n~~ 557 (587)
++- .+.+-. .|+. ++|+.|.+.|+.... |.. .+.| +.++..+|-+.
T Consensus 213 ~~~--~i~~~~--ePs~---~~l~~l~~~ik~~~v~~If~e~~-~~~k~~~~ia~e~g~~v 265 (307)
T 3ujp_A 213 YMW--PINAEQ--QFTP---KQVQTVIEEVKTNNVPTIFCEST-VSDKGQKQVAQATGARF 265 (307)
T ss_dssp EEE--SSCCSS--CCCH---HHHHHHHHHHHTTTCSEEEEETT-SCSHHHHHTTTTTCCEE
T ss_pred Eee--ccCCCC--CCCH---HHHHHHHHHHHhcCCcEEEEeCC-CChHHHHHHHHHhCCce
Confidence 321 122222 2333 556666666666655 322 3333 45555566554
No 123
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=34.33 E-value=55 Score=25.31 Aligned_cols=65 Identities=12% Similarity=0.267 Sum_probs=39.4
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIA--DDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIA--DDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
...+++..|.+|++.+|.+..|+-+ |++.-+. .+ -..-+..++++--..+...|+.+++.-.|..
T Consensus 4 ~~~~~~~ei~~~~~~~D~~g~i~~~--eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~ 70 (109)
T 3fs7_A 4 TDILSAKDIESALSSCQAADSFNYK--SFFSTVGLSSK-TPDQIKKVFGILDQDKSGFIEEEELQLFLKN 70 (109)
T ss_dssp GGTSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTCTTC-CHHHHHHHHHHHSTTCSSSBCHHHHHTTGGG
T ss_pred cCcCCHHHHHHHHHhcCCCCcCcHH--HHHHHHhcCCC-cHHHHHHHHHHHCCCCCCeEeHHHHHHHHHH
Confidence 3568899999999999987778753 2222211 01 1222344555555556667777777666654
No 124
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=33.90 E-value=31 Score=27.24 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 466 IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 466 VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
|..||..|+..|-+|+...|+.+|+.-.|++.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 56788899999999998999999999999885
No 125
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.62 E-value=23 Score=37.36 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=37.1
Q ss_pred CCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 447 QGKVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 447 ~~kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
...+++|| .+.|.+.++.| |..||..|+.+|-.++...|+.+|+.-.++|-
T Consensus 368 ~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv 423 (437)
T 4b4t_I 368 KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERV 423 (437)
T ss_dssp TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 33444443 34455555544 78899999999988999999999999888873
No 126
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=33.40 E-value=79 Score=27.97 Aligned_cols=59 Identities=14% Similarity=0.268 Sum_probs=37.7
Q ss_pred CChHHHHHHHHhcCCCCCCCHHHHHHHHHH-------HHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 432 LGKRKIQDLVSQVDSQGKVDPEVEDLLLEI-------ADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~~kLD~DVEELLLeI-------ADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
++-..|.+-+..+ +...|++|.|=++|| +++||+.-+.|++. +| ...+++.. +--+||+
T Consensus 26 Vsae~L~eEfdef--Gi~~~d~VldKc~ELC~~y~lda~e~VeeWmAFsts--~~--g~~pT~en-L~~FEhE 91 (101)
T 2keb_A 26 ASAQQLAEELQIF--GLDCEEALIEKLVELCVQYGQNEEGMVGELIAFCTS--TH--KVGLTSEI-LNSFEHE 91 (101)
T ss_dssp CCHHHHHHHHHHH--TCBCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HT--CSBCCHHH-HHHHHHH
T ss_pred ccHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cC--CCCCCHHH-HHHHHHH
Confidence 3444555555444 455778899988888 79999999999663 44 33354443 3345554
No 127
>3fi7_A LMO1076 protein; listeria monocytogenes, autolysin, N acetylglucosaminidase, peptidoglycan hydrolase, autoinhibition, GH73, hydrolase; 2.35A {Undefined}
Probab=33.06 E-value=40 Score=31.71 Aligned_cols=39 Identities=26% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCcc
Q 007852 462 ADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLT 501 (587)
Q Consensus 462 ADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~ 501 (587)
.++||+.+...|.+.+|.-+-. ..+-=.+-+||-.||-+
T Consensus 30 ~~~FI~~i~~~A~~~~~~~gi~-~s~~laQa~lESgwG~s 68 (183)
T 3fi7_A 30 QQTFINSISTQAMDLCKKYNLY-PSVMIAQAALESNWGRS 68 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHTTTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHccCCCC
Confidence 5689999999999999987765 33434477889888754
No 128
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.91 E-value=38 Score=35.17 Aligned_cols=49 Identities=18% Similarity=0.172 Sum_probs=36.7
Q ss_pred CCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 449 KVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 449 kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
.+++|| .+.|.+.++.| |..+|..|+..|-.|+...|+.+|+.-.+++.
T Consensus 361 ~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~ 414 (428)
T 4b4t_K 361 SLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 414 (428)
T ss_dssp CBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHh
Confidence 344443 34455555554 78899999999999999999999998888774
No 129
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=32.57 E-value=65 Score=24.82 Aligned_cols=67 Identities=12% Similarity=0.136 Sum_probs=39.5
Q ss_pred ccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
..+++..|.++++.+|.+..|+-+---.++.+..+- ..-+..+.++--..+...|+.+++.-.|.+.
T Consensus 4 ~~~t~~e~~~~~~~~d~~g~i~~~eF~~~~~~~~~~-~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~ 70 (108)
T 1rro_A 4 DILSAEDIAAALQECQDPDTFEPQKFFQTSGLSKMS-ASQVKDIFRFIDNDQSGYLDGDELKYFLQKF 70 (108)
T ss_dssp GTSCHHHHHHHHHHTCSTTCCCHHHHHHHHSGGGSC-HHHHHHHHHHHCTTCSSEECTHHHHTGGGGT
T ss_pred ccCCHHHHHHHHHHccCCCCcCHHHHHHHHhcCccc-HHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH
Confidence 347899999999999987788754221122111111 2223445555545556677777777666553
No 130
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.44 E-value=25 Score=37.42 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=37.4
Q ss_pred CCCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 447 QGKVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 447 ~~kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+..++++| .+.|.+.++.| |..||..|+.+|-.++...|+.+|+.-.|+|-
T Consensus 395 ~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 395 SMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp TSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 33444433 34466665554 78899999999988889999999999988873
No 131
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=32.34 E-value=11 Score=35.69 Aligned_cols=50 Identities=14% Similarity=0.236 Sum_probs=25.9
Q ss_pred CChHHHHHHHHhcCCCCCCCHHH-HHHHHHHHHH----HHHHHHHHHHHHhhhcC
Q 007852 432 LGKRKIQDLVSQVDSQGKVDPEV-EDLLLEIADD----FIDSVTSFACNLAKHRK 481 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~~kLD~DV-EELLLeIADD----FVdsVvt~ACrLAKHRK 481 (587)
.+.+...++++..-....+++++ .+.|.+.++. =|++++..||.+|..|.
T Consensus 186 p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 186 PDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp CCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34444455554443323232221 2334444433 36788888888887664
No 132
>2qnw_A Acyl carrier protein; malaria, SGC, structural genomics CONS fatty acid biosynthesis, lipid synthesis, phosphopantethein transit peptide; 1.90A {Toxoplasma gondii}
Probab=31.70 E-value=9 Score=29.60 Aligned_cols=24 Identities=17% Similarity=0.580 Sum_probs=20.3
Q ss_pred cCCCCccchhHHHHHhhcCCcccc
Q 007852 480 RKSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 480 RKSdTLEvKDVQLhLERnWNI~IP 503 (587)
-+-+.|.+-++...||+.||+.||
T Consensus 37 lG~DSl~~vel~~~le~~fgi~i~ 60 (82)
T 2qnw_A 37 LDADSLDSVELVMAFEEKFGVSIP 60 (82)
T ss_dssp SCCCHHHHHHHHHHHHHHHTCCCC
T ss_pred cCCcHHHHHHHHHHHHHHHCCcCC
Confidence 366777888899999999999987
No 133
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=31.59 E-value=89 Score=27.94 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=47.5
Q ss_pred ccCChHHHHHHHHhcCCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCC
Q 007852 430 QLLGKRKIQDLVSQVDSQ---GKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFS 506 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~---~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFs 506 (587)
.|-+|+-|.+|++-|.+. ...+++|.+-++++...|-+..- +...++|+---|++. |+.+|.-.
T Consensus 76 evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~------------~~p~i~~~y~~Lk~~-G~~Fp~~~ 142 (148)
T 1mhq_A 76 EVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFP------------EDIKIRDAYQMLKKQ-GIIKQDPK 142 (148)
T ss_dssp HHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCT------------TCHHHHHHHHHHHHT-TSSCSCCC
T ss_pred HHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcC------------CCchHHHHHHHHHHc-CCCCCCCC
Confidence 456788889999988764 35789999999999888866521 113378877777776 88888654
Q ss_pred cc
Q 007852 507 SE 508 (587)
Q Consensus 507 sD 508 (587)
-+
T Consensus 143 ~~ 144 (148)
T 1mhq_A 143 LP 144 (148)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 134
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=30.99 E-value=1.2e+02 Score=26.52 Aligned_cols=67 Identities=13% Similarity=0.179 Sum_probs=40.0
Q ss_pred cccCChHHHHHHHHhcCC----CCCCCHH-HHHHHHHHH----------HHHHHH-----HHHHHHHHhhhcCCCCccch
Q 007852 429 NQLLGKRKIQDLVSQVDS----QGKVDPE-VEDLLLEIA----------DDFIDS-----VTSFACNLAKHRKSSTLESK 488 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP----~~kLD~D-VEELLLeIA----------DDFVds-----Vvt~ACrLAKHRKSdTLEvK 488 (587)
+-.|++..|..+++.+.+ ...++++ |++ |+..+ +||+.- -+..+.++-- .++.+|+.+
T Consensus 18 dG~I~~~EL~~~l~~l~~~~~~g~~~~~~~~~~-l~~~~D~d~~G~I~f~EF~~~~~~~~~l~~aF~~fD-d~~G~I~~~ 95 (174)
T 2i7a_A 18 GSDIDATQLQGLLNQELLTGPPGDMFSLDECRS-LVALMELKVNGRLDQEEFARLWKRLVHYQHVFQKVQ-TSPGVLLSS 95 (174)
T ss_dssp CCCEEHHHHHHHHHHHHC-----CCCCHHHHHH-HHHHHCSSCSSEECHHHHHHHHHHHHHHHHHHHHHC-SBTTBEEGG
T ss_pred CCcCCHHHHHHHHHHHHhccCCCCCCCHHHHHH-HHHHHCCCCCCcCCHHHHHHHHHHHHHHHHHHHHhc-CCCCcCCHH
Confidence 445666777777776632 2234433 333 33333 255542 2445677777 788889999
Q ss_pred hHHHHHhhc
Q 007852 489 DILLHLEKN 497 (587)
Q Consensus 489 DVQLhLERn 497 (587)
++.-.|+..
T Consensus 96 El~~~l~~l 104 (174)
T 2i7a_A 96 DLWKAIENT 104 (174)
T ss_dssp GHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 998888763
No 135
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=30.71 E-value=26 Score=36.70 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=36.3
Q ss_pred CCCCHHH-HHHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 448 GKVDPEV-EDLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 448 ~kLD~DV-EELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
..+++++ .+.|.+....| |.+++..|+.+|..++.+.|+.+|+.-.+++-
T Consensus 202 ~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 202 KPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp SCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 3444443 34454444444 57889999999998888999999999999875
No 136
>2a7w_A PRA-PH, phosphoribosyl-ATP pyrophosphatase; structural genomics, PSI, protein structure initiative; 2.80A {Chromobacterium violaceum} SCOP: a.204.1.4
Probab=30.61 E-value=51 Score=29.41 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCccccccccCCCCcHHHH
Q 007852 452 PEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRKSLSSDVHS 523 (587)
Q Consensus 452 ~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFssDEir~yrK~~pTeaHk 523 (587)
++-++++-|+||=|- ...-|..+++ |++.||.-.|+|..+. .|-+|. ..|+..+.+-|.
T Consensus 55 ~d~~el~~E~ADLlY-----HllVlL~~~g---v~l~dV~~eL~~R~~~----sg~~eK-~~R~~~~~~~~~ 113 (116)
T 2a7w_A 55 KDKLHLVREVADLWF-----HTMVLLTYHG---LRPEDVVMELHRREGI----SGLDEK-ASRKPTALEHHH 113 (116)
T ss_dssp TCHHHHHHHHHHHHH-----HHHHHHHHTT---CCHHHHHHHHHHHCC------------------------
T ss_pred CCHHHHHHHHHHHHH-----HHHHHHHHcC---CCHHHHHHHHHHHhcc----cCcchh-ccCCCchhhhcc
Confidence 445555666665332 2333333333 7899999999999876 233443 356666666553
No 137
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=30.14 E-value=1.1e+02 Score=29.92 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 007852 436 KIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKS 482 (587)
Q Consensus 436 KLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKS 482 (587)
.|..|+..-+|+..++.|+.+++.+=-++|...|-....+.|+....
T Consensus 165 sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~~~~ 211 (253)
T 3e46_A 165 SLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPVS 211 (253)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCSCC
T ss_pred HHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhcccccC
Confidence 47788888888899999999999999999999999999998886443
No 138
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=29.56 E-value=23 Score=33.58 Aligned_cols=46 Identities=11% Similarity=0.074 Sum_probs=33.5
Q ss_pred HHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCccccccccC
Q 007852 469 VTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQRK 515 (587)
Q Consensus 469 Vvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFssDEir~yrK 515 (587)
+.+.||+.|-..+ +.|+...+.--|++-..+..|.+...-..++.+
T Consensus 161 ~as~ACr~AIk~g-~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~ 206 (220)
T 3ncv_A 161 LATMSCHGSIRAG-RRLTLPEMNALLRDMENTPRSNQCNHGRPTWVK 206 (220)
T ss_dssp HHHHTTCSSSCSS-CCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEE
T ss_pred HHHHHHHhhhhcC-CCCCHHHHHHHHHHHHhCCCCCcCCCCCcEEEE
Confidence 4567899887555 569988888888888888888776655444433
No 139
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=29.30 E-value=36 Score=31.31 Aligned_cols=45 Identities=13% Similarity=0.096 Sum_probs=28.8
Q ss_pred HHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCCCcccccccc
Q 007852 469 VTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGFSSEERNHQR 514 (587)
Q Consensus 469 Vvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGFssDEir~yr 514 (587)
+.+.||+.|-..+ +.|+...+.--|++-..+..|.....-..++.
T Consensus 138 ~~~~ACr~AIk~g-~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~ 182 (197)
T 3kdg_A 138 AIMMSCKGSIKAN-RHLRNDEIKALLDDLRSTSDPFTCPHGRPIII 182 (197)
T ss_dssp HHHHHHCC----C-CCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEE
T ss_pred HHHHhhHhhccCC-CCCCHHHHHHHHHHHHcCCCCCcCCCCCcEEE
Confidence 5578999987655 56888888777777777777776665444433
No 140
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=29.16 E-value=55 Score=25.28 Aligned_cols=66 Identities=14% Similarity=0.201 Sum_probs=42.0
Q ss_pred cccCChHHHHHHHHhcCCCCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 429 NQLLGKRKIQDLVSQVDSQGKVDPEVEDLLLEIA--DDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 429 nqILtKrKLqeLVrqIDP~~kLD~DVEELLLeIA--DDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
...+++..|.+|++.+|.+..|+-+ |++.-+. .+ -..-+..++++.-..+...|+.+++.-.|...
T Consensus 3 ~~~~s~~ei~~~~~~~d~~g~i~~~--eF~~~~~~~~~-~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~ 70 (109)
T 5pal_A 3 TKVLKADDINKAISAFKDPGTFDYK--RFFHLVGLKGK-TDAQVKEVFEILDKDQSGFIEEEELKGVLKGF 70 (109)
T ss_dssp GGTSCHHHHHHHHHHTCSTTCCCHH--HHHHHHTCTTC-CHHHHHHHHHHHCTTCSSEECHHHHHTHHHHH
T ss_pred CCcCCHHHHHHHHHHhCCCCcCcHH--HHHHHHhhccC-cHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 4578999999999999997777743 3222221 00 02234445555555666778888887777653
No 141
>2dnw_A Acyl carrier protein; ACP, fatty acid biosynthesis, mitochondria, NADH:ubiquinone oxidereductase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.70 E-value=5.2 Score=32.51 Aligned_cols=23 Identities=17% Similarity=0.553 Sum_probs=19.6
Q ss_pred CCCCccchhHHHHHhhcCCcccc
Q 007852 481 KSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IP 503 (587)
+-+.|++-++...||+.||+.||
T Consensus 46 G~DSL~~vel~~~le~~fgi~i~ 68 (99)
T 2dnw_A 46 GLDSLDQVEIIMAMEDEFGFEIP 68 (99)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCC
Confidence 55677788889999999999987
No 142
>2jq4_A AGR_C_4658P, hypothetical protein ATU2571; ATC2521, unknown function, ATC, S genomics, PSI-2, protein structure initiative; NMR {Agrobacterium tumefaciens} SCOP: a.28.1.1
Probab=27.98 E-value=5.4 Score=33.42 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.8
Q ss_pred CCCCccchhHHHHHhhcCCcccc
Q 007852 481 KSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IP 503 (587)
+-+.|++-++...||+.||+.||
T Consensus 54 GlDSL~~veLv~~lE~~fgI~i~ 76 (105)
T 2jq4_A 54 GLSSFASVQLMLGIEEAFDIEFP 76 (105)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCcC
Confidence 57778889999999999999987
No 143
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=27.91 E-value=1.7e+02 Score=23.38 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=12.5
Q ss_pred HHHHhhhcCCCCccchhHHHHHhh
Q 007852 473 ACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 473 ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
+++..-..++..|+..++.-+|+.
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~ 124 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKE 124 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHH
Confidence 333333344555666666666653
No 144
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=27.42 E-value=1.4e+02 Score=27.51 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=40.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 007852 436 KIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRK 481 (587)
Q Consensus 436 KLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRK 481 (587)
.|..|+..-+|+..++.|+.+++.+=-++|.+.|-....+.|+...
T Consensus 113 ~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a~~~~ 158 (201)
T 3k9o_A 113 SLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGAPV 158 (201)
T ss_dssp HHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccccc
Confidence 4778888878889999999999999999999999999888888643
No 145
>3ipq_A Oxysterols receptor LXR-alpha; LXR homodimer, LXR signaling, alternative DNA-binding, metal-binding, nucleus, polymorphism, receptor transcription; HET: 965; 2.00A {Homo sapiens} PDB: 3ips_A* 3ipu_A* 3fc6_B* 3fal_B* 1uhl_B* 2acl_B* 1upv_A* 1upw_A* 1p8d_A* 1pq9_A* 1pq6_A* 1pqc_A* 3kfc_A* 4dk7_A* 4dk8_A* 3l0e_A*
Probab=27.25 E-value=32 Score=32.83 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcC
Q 007852 456 DLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNW 498 (587)
Q Consensus 456 ELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnW 498 (587)
..+.++++.=|..+|++|-.+. +...|...|=..-|+..|
T Consensus 91 ~~l~e~~~~~l~~~VewaK~lP---~F~~L~~~DQ~~LLk~~~ 130 (283)
T 3ipq_A 91 AHFTELAIVSVQEIVDFAKQLP---GFLQLSREDQIALLKTSA 130 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHST---TGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc---ChhhCCHHHHHHHHHHHH
Confidence 3455555555566666655544 345688888544444443
No 146
>1x3o_A Acyl carrier protein; structural genomics, riken structural genomics/proteomics in RSGI, NPPSFA; 1.50A {Thermus thermophilus}
Probab=26.91 E-value=11 Score=28.37 Aligned_cols=23 Identities=17% Similarity=0.534 Sum_probs=18.8
Q ss_pred CCCCccchhHHHHHhhcCCcccc
Q 007852 481 KSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IP 503 (587)
+-+.|.+-++...||+.||+.||
T Consensus 36 G~DSl~~~~l~~~le~~fgi~i~ 58 (80)
T 1x3o_A 36 GADSLDTVELIMGLEDEFGLEIS 58 (80)
T ss_dssp CCCHHHHHHHHHHHHHHHCCCCC
T ss_pred CccHHHHHHHHHHHHHHHCCCcC
Confidence 45667777888999999999987
No 147
>3hvm_A Agmatine deiminase; hydrolase; 2.10A {Helicobacter pylori} SCOP: d.126.1.6 PDB: 2cmu_A
Probab=26.79 E-value=14 Score=37.70 Aligned_cols=68 Identities=21% Similarity=0.293 Sum_probs=47.7
Q ss_pred HHHHHHHHhhhcCCCCccchhHHHHHhhcCC----cccc-C-CCccccc----c-----------c-cCCCCcHHHHHHH
Q 007852 469 VTSFACNLAKHRKSSTLESKDILLHLEKNWH----LTVP-G-FSSEERN----H-----------Q-RKSLSSDVHSKRL 526 (587)
Q Consensus 469 Vvt~ACrLAKHRKSdTLEvKDVQLhLERnWN----I~IP-G-FssDEir----~-----------y-rK~~pTeaHkQRM 526 (587)
+++.+|.|-++|+-. ++-.+|.-.|++.+| ||+| | +..||-. . + .-..+.+.|-.++
T Consensus 153 ltTe~clLn~nRNP~-lsk~eiE~~L~~~LGv~kviWL~~G~l~~DdTdgHID~larFv~p~~v~~~~~~d~~d~~y~~~ 231 (330)
T 3hvm_A 153 LTNTQCLLEKNRNPH-LNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLDKDTIVYSACEDKNDEHYTAL 231 (330)
T ss_dssp EEEHHHHTCTTTSTT-SCHHHHHHHHHHHHCCSEEEEECCCCCTTCCSSCCGGGTEEEEETTEEEEEECCCTTSTTHHHH
T ss_pred EEEeehhcCCCCCCC-CCHHHHHHHHHHHhCCCEEEEECCCCcCCCCCCccchheeEecCCCEEEEEcCCCCCCccHHHH
Confidence 467889999999976 899999999999999 6789 7 5554311 0 1 1123455566777
Q ss_pred HHHHHhhccCC
Q 007852 527 EMIRALMEPSQ 537 (587)
Q Consensus 527 AlIRK~m~ss~ 537 (587)
..+.+.+++..
T Consensus 232 ~~~~~~L~~~~ 242 (330)
T 3hvm_A 232 KKMQEELKTFK 242 (330)
T ss_dssp HHHHHHHHHCB
T ss_pred HHHHHHHHhhh
Confidence 77777776653
No 148
>2lol_A ACP, acyl carrier protein; lipid transport; NMR {Rickettsia prowazekii str}
Probab=26.67 E-value=8.4 Score=29.42 Aligned_cols=25 Identities=16% Similarity=0.571 Sum_probs=20.6
Q ss_pred cCCCCccchhHHHHHhhcCCccccC
Q 007852 480 RKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 480 RKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
-+-+.|.+-++...||+.||+.||-
T Consensus 36 lG~DSl~~~el~~~le~~fgi~i~~ 60 (81)
T 2lol_A 36 LKADSLDTVELMMAIEVEYGIDIPD 60 (81)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCCCCG
T ss_pred cCCcHHHHHHHHHHHHHHHCCCCCH
Confidence 3666777888899999999999873
No 149
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Probab=26.36 E-value=68 Score=24.72 Aligned_cols=22 Identities=9% Similarity=0.232 Sum_probs=18.7
Q ss_pred ccCChHHHHHHHHhcCCCCCCC
Q 007852 430 QLLGKRKIQDLVSQVDSQGKVD 451 (587)
Q Consensus 430 qILtKrKLqeLVrqIDP~~kLD 451 (587)
..+++..|.+|++.+|.+..||
T Consensus 4 ~~~~~~e~~~l~~~~d~~g~i~ 25 (108)
T 2kyc_A 4 DILSPSDIAAALRDCQAPDSFS 25 (108)
T ss_dssp SSSCHHHHHHHHTTSCSTTTCC
T ss_pred ccCCHHHHHHHHHHcCCCCcCC
Confidence 4578999999999999777777
No 150
>4hw4_A Induced myeloid leukemia cell differentiation Pro 1; anti-apoptotic protein, BH3 peptides, apoptosis; 1.53A {Homo sapiens} PDB: 3kj0_A 2pqk_A 3kj1_A 3kj2_A 3kz0_A 3mk8_A 2kbw_A 4hw3_A* 4hw2_A* 3d7v_A 3io9_A 2nl9_A* 2nla_A 4g35_A* 1wsx_A 2jm6_B 2roc_A 2rod_A 3mk8_B
Probab=26.07 E-value=52 Score=29.97 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH-H---------HHHHHHHhhhcCCC
Q 007852 435 RKIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDS-V---------TSFACNLAKHRKSS 483 (587)
Q Consensus 435 rKLqeLVrqIDP~~kLD~DVEELLLeIADDFVds-V---------vt~ACrLAKHRKSd 483 (587)
+.+.+++++++.+. +++.+.+.++||+..+| | +.|++.||+|-.+.
T Consensus 56 ~~f~~m~~~L~it~---~~a~~~F~~Va~elF~dGi~NWGRIVaLfaFgg~la~~~~~~ 111 (157)
T 4hw4_A 56 TAFQGMLRKLDIKN---EDDVKSLSRVMIHVFSDGVTNWGRIVTLISFGAFVAKHLKTI 111 (157)
T ss_dssp HHHHHHHHHHCCCS---HHHHHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhcCCCC---chHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777766543 34556689999985554 3 77999999987653
No 151
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=26.06 E-value=38 Score=35.19 Aligned_cols=32 Identities=19% Similarity=0.165 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 466 IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 466 VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
|..||..|+..|-.++...|+.+|+...|+|-
T Consensus 358 i~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v 389 (405)
T 4b4t_J 358 VKGVCTEAGMYALRERRIHVTQEDFELAVGKV 389 (405)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 78899999999988888899999999998874
No 152
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=26.04 E-value=73 Score=29.25 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCCCHHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCC------------CCccchhHHHHHhh
Q 007852 448 GKVDPEVEDLLLEIADDFI----DSVTSFACNLAKHRKS------------STLESKDILLHLEK 496 (587)
Q Consensus 448 ~kLD~DVEELLLeIADDFV----dsVvt~ACrLAKHRKS------------dTLEvKDVQLhLER 496 (587)
..++++..+.|.+.++.|. ..++..|+..|..+.. ..|+.+|+.-.|++
T Consensus 207 ~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~ 271 (297)
T 3b9p_A 207 SPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKR 271 (297)
T ss_dssp CCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHH
Confidence 3578888888888777654 4566666666665532 34566665555443
No 153
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=25.93 E-value=1.7e+02 Score=31.31 Aligned_cols=51 Identities=8% Similarity=0.130 Sum_probs=36.9
Q ss_pred cCChHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHH---------HHHHHHHHHHhhhcC
Q 007852 431 LLGKRKIQDLVSQVDS------QGKVDPEVEDLLLEIADDFI---------DSVTSFACNLAKHRK 481 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP------~~kLD~DVEELLLeIADDFV---------dsVvt~ACrLAKHRK 481 (587)
..+...+.++++.+-. +..+++++.+.+.++++.|+ -+++..||..++.+.
T Consensus 324 ~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a~~~~~~~~ 389 (758)
T 3pxi_A 324 QPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRS 389 (758)
T ss_dssp CCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHHHHHHHhhc
Confidence 3467777888876533 45799999999999998774 356777877666553
No 154
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=25.90 E-value=83 Score=28.62 Aligned_cols=63 Identities=6% Similarity=0.053 Sum_probs=41.1
Q ss_pred cCChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 431 LLGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 431 ILtKrKLqeLVrqID--P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
-++.+.+.++++.+- .+..+|+++.+.|.+.++.-+..++...++++... ..++.+||.-.+.
T Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 165 KLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGH--GLVNADNVFKIVD 229 (323)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--SSBCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--CCcCHHHHHHHHC
Confidence 456777777776542 24568999999999998866655555555554332 3577777765554
No 155
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=25.88 E-value=97 Score=31.55 Aligned_cols=66 Identities=9% Similarity=0.164 Sum_probs=45.6
Q ss_pred cCChHHHHHHHHhcCC------CCCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHhhhcCCC-CccchhHHHHH
Q 007852 431 LLGKRKIQDLVSQVDS------QGKVDPEVEDLLLEIADDFID---------SVTSFACNLAKHRKSS-TLESKDILLHL 494 (587)
Q Consensus 431 ILtKrKLqeLVrqIDP------~~kLD~DVEELLLeIADDFVd---------sVvt~ACrLAKHRKSd-TLEvKDVQLhL 494 (587)
..+...+.++++.+-. +..+++++.+.+.++++.|+. +++..+|..++.+... .-+++++.-.|
T Consensus 324 ~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~~~~~~p~~i~~l~~~i 403 (468)
T 3pxg_A 324 QPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSFTTPPNLKELEQKL 403 (468)
T ss_dssp CCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHHHTTSCCSSTHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHhccCCCchHHHHHHHHH
Confidence 3466777777776643 357999999999999998763 4677788877776653 34555555444
Q ss_pred hh
Q 007852 495 EK 496 (587)
Q Consensus 495 ER 496 (587)
++
T Consensus 404 ~~ 405 (468)
T 3pxg_A 404 DE 405 (468)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 156
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=25.83 E-value=2e+02 Score=22.97 Aligned_cols=65 Identities=11% Similarity=0.190 Sum_probs=34.4
Q ss_pred CChHHHHHHHHhcCCCC--CCCHH-HHHHHHHHHHH----HHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 432 LGKRKIQDLVSQVDSQG--KVDPE-VEDLLLEIADD----FIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~~--kLD~D-VEELLLeIADD----FVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
+++..+..+++.+|.+. .|+-+ ...++..+..+ .....+..+.+..-..+...|+..++.-.|..
T Consensus 53 ~~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~e~~~~l~~ 124 (162)
T 1top_A 53 PTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSEEELANCFRIFDKNADGFIDIEELGEILRA 124 (162)
T ss_dssp CCHHHHHHHHHHHCTTSCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcCCCCCcEeHHHHHHHHHHHhccccccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35566666777666543 34321 22222221111 13344555666665666777888888777764
No 157
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=24.55 E-value=91 Score=28.28 Aligned_cols=63 Identities=10% Similarity=0.052 Sum_probs=41.1
Q ss_pred cCChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh
Q 007852 431 LLGKRKIQDLVSQVD--SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE 495 (587)
Q Consensus 431 ILtKrKLqeLVrqID--P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE 495 (587)
-++.+.+.++++.+- .+..+|+++.+.|.+.++.-+..++...++++.. ...++.+||.-.+.
T Consensus 160 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~--~~~i~~~~v~~~~~ 224 (319)
T 2chq_A 160 PVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI--GEVVDADTIYQITA 224 (319)
T ss_dssp CCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS--SSCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHC
Confidence 346667777776552 3456899999998888776666666555555543 34577777765543
No 158
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal binding protein, binding protein; NMR {Homo sapiens} PDB: 3c1v_A
Probab=24.19 E-value=2.3e+02 Score=23.95 Aligned_cols=43 Identities=14% Similarity=0.360 Sum_probs=22.8
Q ss_pred cCChHHHHHHHHh-cCC--CCCC-CHHHHHHHHHH---------HHHHHHHHHHHH
Q 007852 431 LLGKRKIQDLVSQ-VDS--QGKV-DPEVEDLLLEI---------ADDFIDSVTSFA 473 (587)
Q Consensus 431 ILtKrKLqeLVrq-IDP--~~kL-D~DVEELLLeI---------ADDFVdsVvt~A 473 (587)
.|++..|..+++. +.. ...+ +.+|++++.++ .+|||.-+...+
T Consensus 40 ~Is~~EL~~~l~~~l~~~lg~~~t~~ev~~li~~~D~dgdG~Idf~EF~~~m~~~~ 95 (113)
T 2lnk_A 40 KLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQEYCVFLSCIA 95 (113)
T ss_dssp CBCHHHHHHHHHHHCGGGGTTCCCTTHHHHHHHHHCSSSSSCBCHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHcchhcCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHH
Confidence 6777777777764 210 1222 34566655544 246666555443
No 159
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=24.14 E-value=2.4e+02 Score=22.69 Aligned_cols=63 Identities=17% Similarity=0.249 Sum_probs=34.3
Q ss_pred CChHHHHHHHHhcCCCC--CCCHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 432 LGKRKIQDLVSQVDSQG--KVDPEVEDLLLEIAD----DFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~~--kLD~DVEELLLeIAD----DFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
+++..+.++++.+|.+. .|+- +|++.-+.. .-....+..+.++.-..++..|+..++.-.|..
T Consensus 39 ~~~~~~~~~~~~~d~~~~g~i~~--~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~ 107 (143)
T 2obh_A 39 PKKEEIKKMISEIDKEGTGKMNF--GDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKE 107 (143)
T ss_dssp CCHHHHHHHHHHHTTTCCSEEEH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCeeeH--HHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 45666777777776543 2332 222221111 111234555666666666777888888776643
No 160
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=24.14 E-value=1e+02 Score=24.94 Aligned_cols=28 Identities=11% Similarity=0.005 Sum_probs=17.1
Q ss_pred HHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 469 VTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 469 Vvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
.+..+.+..-..+...|+..|+.-.|..
T Consensus 100 ~~~~~F~~~D~d~~G~i~~~e~~~~l~~ 127 (166)
T 2aao_A 100 HLFAAFTYFDKDGSGYITPDELQQACEE 127 (166)
T ss_dssp HHHHHHHHHCTTCSSSBCHHHHHHHTCC
T ss_pred HHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 3445555555556666777777666653
No 161
>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}
Probab=24.00 E-value=2.5e+02 Score=21.84 Aligned_cols=48 Identities=19% Similarity=0.289 Sum_probs=36.9
Q ss_pred CChHHHHHHHHhc----------C-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007852 432 LGKRKIQDLVSQV----------D-SQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKH 479 (587)
Q Consensus 432 LtKrKLqeLVrqI----------D-P~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKH 479 (587)
+-+..+.+|+.++ + |+..||..-+.=|-..+|.|+|.-..-+-++++.
T Consensus 5 ~~~~~~~~~~~~lt~~Cf~kCv~~~~~~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~~ 63 (64)
T 3cjh_B 5 NSKQKVQMSIHQFTNICFKKCVESVNDSNLSSQEEQCLSNCVNRFLDTNIRIVNGLQNT 63 (64)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHCCCCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCcCChhHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4566777777665 4 6778999999999999999999876666666554
No 162
>3ce7_A Specific mitochodrial acyl carrier protein; malaria, mitochondrial, ACP, fatty acid biosynthesis, lipid synthesis, phosphopantetheine; 1.64A {Toxoplasma}
Probab=23.76 E-value=5.1 Score=33.82 Aligned_cols=26 Identities=27% Similarity=0.505 Sum_probs=21.9
Q ss_pred hcCCCCccchhHHHHHhhcCCccccC
Q 007852 479 HRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 479 HRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
.-+-+.|++-++...||+.||+.||-
T Consensus 52 dLglDSL~~veli~~lE~~fgi~i~~ 77 (107)
T 3ce7_A 52 DRLWDCLDTVEFVLDVEEIFDVTVPD 77 (107)
T ss_dssp SSBCCHHHHHHHHHHHHHHHTCCCCH
T ss_pred ccCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 34677788889999999999999983
No 163
>3nnr_A Transcriptional regulator, TETR family; TETR-family transcriptional regulator, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.49A {Marinobacter aquaeolei}
Probab=23.73 E-value=21 Score=30.86 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHHHhhccCCcc
Q 007852 519 SDVHSKRLEMIRALMEPSQSE 539 (587)
Q Consensus 519 TeaHkQRMAlIRK~m~ss~se 539 (587)
++.-+.....+++..+....+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~ 219 (228)
T 3nnr_A 199 TPEYRERVLALREKYRPTLPE 219 (228)
T ss_dssp CHHHHHHHHHHHHTTCC----
T ss_pred CHHHHHHHHHHHHHHHhcCch
Confidence 344455555555555554443
No 164
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=23.30 E-value=2e+02 Score=22.27 Aligned_cols=63 Identities=8% Similarity=0.184 Sum_probs=33.1
Q ss_pred CChHHHHHHHHhcCCC--CCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHH
Q 007852 432 LGKRKIQDLVSQVDSQ--GKVDPE-VEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHL 494 (587)
Q Consensus 432 LtKrKLqeLVrqIDP~--~kLD~D-VEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhL 494 (587)
-++.+|.++.+.+|.+ ..|+.+ ...+|..+...+-+..+...++.+-..+...|+..+..-.+
T Consensus 26 ~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~ 91 (94)
T 2kz2_A 26 DSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMM 91 (94)
T ss_dssp SCHHHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 3567788888887764 356643 55555544322223333333333333445556666654444
No 165
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=22.85 E-value=67 Score=27.47 Aligned_cols=32 Identities=16% Similarity=0.271 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 466 IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 466 VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+..|+..|...|+.++.+.|++.++.+.|-++
T Consensus 86 ~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~ 117 (145)
T 3fes_A 86 SKQILELSGMFANKLKTNYIGTEHILLAIIQE 117 (145)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHHhC
Confidence 45788899999999999999999999998654
No 166
>1af8_A Actinorhodin polyketide synthase acyl carrier Pro; acyl carrier protein, solution STR antibiotic biosynthesis; NMR {Streptomyces coelicolor} SCOP: a.28.1.1 PDB: 2af8_A 2k0x_A* 2k0y_A 2kg6_A* 2kg8_A* 2kg9_A* 2kga_A* 2kgc_A* 2kgd_A* 2kge_A*
Probab=22.73 E-value=46 Score=25.65 Aligned_cols=24 Identities=17% Similarity=0.343 Sum_probs=21.9
Q ss_pred CCCCccchhHHHHHhhcCCccccC
Q 007852 481 KSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IPG 504 (587)
+-+.|.+-++...||+.||+.||-
T Consensus 39 G~DSL~~vel~~~le~~fgi~i~~ 62 (86)
T 1af8_A 39 GYDSLALMETAARLESRYGVSIPD 62 (86)
T ss_dssp TCCTTTHHHHHHHHTTTTCSCCCT
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCH
Confidence 678899999999999999999985
No 167
>2iie_A Integration HOST factor; DNA kinking, bending, U-turn, intercalation, divalent, metal, recombination/DNA complex; HET: DNA; 2.41A {Escherichia coli} PDB: 2iif_A*
Probab=22.01 E-value=1.3e+02 Score=28.28 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=14.2
Q ss_pred HHhhcCCccccCCCccccc
Q 007852 493 HLEKNWHLTVPGFSSEERN 511 (587)
Q Consensus 493 hLERnWNI~IPGFssDEir 511 (587)
+|.+.+.+.|+|||.=+++
T Consensus 81 ~L~~G~~V~L~GfGtF~v~ 99 (204)
T 2iie_A 81 ALENGEQVKLSGFGNFDLR 99 (204)
T ss_dssp HHHTTCEEEETTTEEEEEE
T ss_pred HHhCCCeEEecCCEEEEEE
Confidence 4556677899999996554
No 168
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=21.79 E-value=1.2e+02 Score=27.57 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=25.8
Q ss_pred CCCHHHHHHHHHHH--H--HHHHHHHHHHHHHhhhcCCCCccchhH
Q 007852 449 KVDPEVEDLLLEIA--D--DFIDSVTSFACNLAKHRKSSTLESKDI 490 (587)
Q Consensus 449 kLD~DVEELLLeIA--D--DFVdsVvt~ACrLAKHRKSdTLEvKDV 490 (587)
.+++++.+.|.... . .-+.+|++.+|.+++ .+.|+.+|+
T Consensus 208 ~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 208 GFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred CcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 68888888877543 1 245677777777765 345777775
No 169
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=21.57 E-value=1.3e+02 Score=24.42 Aligned_cols=30 Identities=0% Similarity=0.000 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 468 SVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 468 sVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
..+..+.+..-..++..|+..++.-.|...
T Consensus 94 ~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~ 123 (174)
T 1q80_A 94 GPLPLFFRAVDTNEDNNISRDEYGIFFGML 123 (174)
T ss_dssp THHHHHHHHHCTTSSSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHHc
Confidence 334445555545555667777766666553
No 170
>1f80_D Acyl carrier protein; transferase; HET: PN2; 2.30A {Bacillus subtilis} SCOP: a.28.1.1 PDB: 2x2b_A* 1hy8_A
Probab=21.34 E-value=10 Score=28.95 Aligned_cols=23 Identities=13% Similarity=0.445 Sum_probs=19.7
Q ss_pred CCCCccchhHHHHHhhcCCcccc
Q 007852 481 KSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IP 503 (587)
+-+.|++-++...||+.||+.||
T Consensus 38 G~DSl~~vel~~~le~~fgi~i~ 60 (81)
T 1f80_D 38 GADXLDVVELVMELEDEFDMEIS 60 (81)
T ss_dssp CCCHHHHHHHHHHHHHHTTCCCC
T ss_pred CCcHHHHHHHHHHHHHHhCCccC
Confidence 56677788889999999999987
No 171
>2kr5_A PKS, aflatoxin biosynthesis polyketide synthase; acyl carrrier protein, holo, phosphopantetheine, transport protein; HET: PNS; NMR {Aspergillus parasiticus}
Probab=21.22 E-value=31 Score=26.56 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.0
Q ss_pred CCCCccchhHHHHHhhcCCccccC
Q 007852 481 KSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IPG 504 (587)
+-+.|.+-++...||+.|++.||-
T Consensus 41 G~DSL~~~~l~~~l~~~~g~~l~~ 64 (89)
T 2kr5_A 41 GIDSLSSMVIGSRFREDLGLDLGP 64 (89)
T ss_dssp TCCHHHHHHHHHHHHHTTCCCCCS
T ss_pred CccHHHHHHHHHHHHHHHCCCCCc
Confidence 567777888889999999999874
No 172
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=21.08 E-value=69 Score=31.14 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=25.4
Q ss_pred ChHHHHHHHHhcC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007852 433 GKRKIQDLVSQVD--SQGKVDPEVEDLLLEIADDFIDSVTSFACNLA 477 (587)
Q Consensus 433 tKrKLqeLVrqID--P~~kLD~DVEELLLeIADDFVdsVvt~ACrLA 477 (587)
+.+...++++.+- ....+++++.+.|.+.++.|.-..+...|..|
T Consensus 252 ~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a 298 (357)
T 3d8b_A 252 EASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREA 298 (357)
T ss_dssp CHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 3444444444332 23457888888888877766554444444443
No 173
>1l0i_A Acyl carrier protein; acyl chain binding, fatty acid biosynt lipid transport; HET: PSR; 1.20A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ny7_B* 2fhs_C 1l0h_A* 1acp_A 1t8k_A 2fac_A* 2fad_A* 2fae_A* 2k92_A 2k93_A 2k94_A 2l0q_A
Probab=21.07 E-value=11 Score=28.59 Aligned_cols=23 Identities=17% Similarity=0.592 Sum_probs=18.7
Q ss_pred CCCCccchhHHHHHhhcCCcccc
Q 007852 481 KSSTLESKDILLHLEKNWHLTVP 503 (587)
Q Consensus 481 KSdTLEvKDVQLhLERnWNI~IP 503 (587)
+-+.|.+-++...||+.||+.||
T Consensus 34 G~DSl~~~el~~~le~~fgi~i~ 56 (78)
T 1l0i_A 34 GADSLDTVELVMALEEEFDTEIP 56 (78)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCC
Confidence 45666777888899999999987
No 174
>3ejb_A Acyl carrier protein; protein-protein complex, cytochrome P450 fold, carrier protein, 4-helix bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Escherichia coli} SCOP: a.28.1.1 PDB: 3ejd_A* 3eje_A*
Probab=21.02 E-value=15 Score=30.22 Aligned_cols=26 Identities=15% Similarity=0.502 Sum_probs=22.1
Q ss_pred hcCCCCccchhHHHHHhhcCCccccC
Q 007852 479 HRKSSTLESKDILLHLEKNWHLTVPG 504 (587)
Q Consensus 479 HRKSdTLEvKDVQLhLERnWNI~IPG 504 (587)
.-+-+.|++-++...||+.||+.||-
T Consensus 51 dLGlDSL~~vel~~~lE~~fgi~i~~ 76 (97)
T 3ejb_A 51 DLGADSLDTVELVMALEEEFDTEIPD 76 (97)
T ss_dssp TTCCCTTHHHHHHHHHHHHTTCCCCH
T ss_pred hcCCCHHHHHHHHHHHHHHHCCCCCH
Confidence 34777888999999999999999873
No 175
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=20.99 E-value=58 Score=26.76 Aligned_cols=86 Identities=13% Similarity=0.194 Sum_probs=42.2
Q ss_pred hHHHHHHHHhcCC--CCCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHh----hcCCccccCCC
Q 007852 434 KRKIQDLVSQVDS--QGKVDPE-VEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLE----KNWHLTVPGFS 506 (587)
Q Consensus 434 KrKLqeLVrqIDP--~~kLD~D-VEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLE----RnWNI~IPGFs 506 (587)
+.+|.++.+.+|. +..|+.+ +.++|. ...+-++.+...++.+-..+..+|+..+....+. ..-|..||..-
T Consensus 13 ~~~l~~~F~~~D~d~dG~I~~~El~~~l~--~~~~~~~~~~~i~~~~D~d~dG~I~~~EF~~~~~~~~~~~~G~~lp~~l 90 (111)
T 2kgr_A 13 RLKYRQLFNSHDKTMSGHLTGPQARTILM--QSSLPQAQLASIWNLSDIDQDGKLTAEEFILAMHLIDVAMSGQPLPPVL 90 (111)
T ss_dssp HHHHHHHHHTTSCSSCCEEEHHHHHHHHH--TTCCCHHHHHHHHHHHCSSCCSEEEHHHHHHHHHHHHHHHTTCCCCSSC
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHH--hCCCCHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHHHHHHCCCCCcccc
Confidence 4456666666665 3345544 333332 1112222333334445555666677776533332 12367788766
Q ss_pred ccccc-cccCCCCcHH
Q 007852 507 SEERN-HQRKSLSSDV 521 (587)
Q Consensus 507 sDEir-~yrK~~pTea 521 (587)
.+.+- +.++..+.|-
T Consensus 91 p~~l~pps~~~~~~~~ 106 (111)
T 2kgr_A 91 PPEYIPPSFRRVRLEH 106 (111)
T ss_dssp CGGGSCTTTTCCCCCC
T ss_pred CcccCCCccCCCcccc
Confidence 65553 4444444443
No 176
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=20.92 E-value=83 Score=32.55 Aligned_cols=94 Identities=12% Similarity=0.103 Sum_probs=60.0
Q ss_pred HHHHHHHhcCCCCCCCHHHH-HH---------HHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhhcCCccccCC
Q 007852 436 KIQDLVSQVDSQGKVDPEVE-DL---------LLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEKNWHLTVPGF 505 (587)
Q Consensus 436 KLqeLVrqIDP~~kLD~DVE-EL---------LLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLERnWNI~IPGF 505 (587)
-|++|.+.+|--..||.|.. |+ -.+.+|+.|-.++.....+-+.-+.-.+|+.||.-.|.. .++.+.|+
T Consensus 150 ~l~~L~e~~D~~ividNeaL~~i~~~~l~i~~af~~~N~ll~~~vsgIt~~ir~pG~iNvD~~dv~t~L~~-~g~a~~g~ 228 (382)
T 2vxy_A 150 GISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSN-KGSALMGI 228 (382)
T ss_dssp HHHHHHHHCSEEEEEEHHHHHHHSCTTCCHHHHHHHHHHHHHHHHHHHHTTTSSCCTTCCCHHHHHHHTTC-SSEEEEEE
T ss_pred HHHHHHHhCCEEEEEccHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCccccCHHHHHHhccC-CCceEEEE
Confidence 36677777777666666531 11 245566666666665555556667778999999999986 68888888
Q ss_pred CccccccccCCCCcHHHHHHHHHHHHhhccCCcccc
Q 007852 506 SSEERNHQRKSLSSDVHSKRLEMIRALMEPSQSETI 541 (587)
Q Consensus 506 ssDEir~yrK~~pTeaHkQRMAlIRK~m~ss~se~~ 541 (587)
+...-+ ..-.+++++.+++-..+++
T Consensus 229 g~a~g~-----------~r~~ea~~~a~~s~ll~~d 253 (382)
T 2vxy_A 229 GIATGE-----------NRAAEAAKKAISSPLLEAA 253 (382)
T ss_dssp EEEEST-----------THHHHHHHHHHTCTTSCSC
T ss_pred Eecccc-----------cHHHHHHHHHHhCcCcCCC
Confidence 743211 1124467777765544544
No 177
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A
Probab=20.71 E-value=36 Score=29.59 Aligned_cols=33 Identities=12% Similarity=0.110 Sum_probs=26.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007852 447 QGKVDPEVEDLLLEIADDFIDSVTSFACNLAKH 479 (587)
Q Consensus 447 ~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKH 479 (587)
..+=|++|.++|.+|||+=.+-|..+---|-+.
T Consensus 42 ~~t~D~evk~vl~~iadEEkeH~g~~l~~Lrr~ 74 (95)
T 1zpy_A 42 NACKDKELKAILAHNRDEEKEHAAMLLEWIRRC 74 (95)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346799999999999999888887776666554
No 178
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=20.64 E-value=1.4e+02 Score=27.28 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=49.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---ccchhHHHHHhhcCCccccCCCccccc
Q 007852 436 KIQDLVSQVDSQGKVDPEVEDLLLEIADDFIDSVTSFACNLAKHRKSST---LESKDILLHLEKNWHLTVPGFSSEERN 511 (587)
Q Consensus 436 KLqeLVrqIDP~~kLD~DVEELLLeIADDFVdsVvt~ACrLAKHRKSdT---LEvKDVQLhLERnWNI~IPGFssDEir 511 (587)
+|++.+..+=| +++|..++..+-..|-+...+.-.++.-...... +-+.||.|+.++-= .|+||+..|+.
T Consensus 63 kLH~~Ls~~LP----~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~--~L~g~~d~~l~ 135 (141)
T 3n1e_A 63 KMHEAIFDLLP----EEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQ--ALKGLKDLDLN 135 (141)
T ss_dssp HHHHHHTTTSC----HHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHH--TSTTCTTCCCC
T ss_pred HHHHHHHhhCC----HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhc--ccCCCCccccc
Confidence 56666654433 5569999999999999998887666543222221 34599999999863 46788887765
No 179
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=20.58 E-value=2.2e+02 Score=19.65 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=32.5
Q ss_pred HHHhcCC--CCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCccchhHHHHHhh
Q 007852 440 LVSQVDS--QGKVDP-EVEDLLLEIADDFIDSVTSFACNLAKHRKSSTLESKDILLHLEK 496 (587)
Q Consensus 440 LVrqIDP--~~kLD~-DVEELLLeIADDFVdsVvt~ACrLAKHRKSdTLEvKDVQLhLER 496 (587)
+.+.+|. +..|+. |...+|..+...+-+..+....+.+-..+...|+..+..-.+.+
T Consensus 5 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 5 LFKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp HHHHHCTTCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred HHHHHCCCCCCcccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 3444443 345553 35555555555555555565666665566677888887655543
No 180
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=20.50 E-value=41 Score=28.17 Aligned_cols=44 Identities=23% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCccchhHHHHHhhcCCcc-----ccCCCccccccccCCCCc--HHHHHHH
Q 007852 483 STLESKDILLHLEKNWHLT-----VPGFSSEERNHQRKSLSS--DVHSKRL 526 (587)
Q Consensus 483 dTLEvKDVQLhLERnWNI~-----IPGFssDEir~yrK~~pT--eaHkQRM 526 (587)
+.=|++||.-||...|+-. .+-+..++++..|+...+ +.|+.|-
T Consensus 76 sd~ei~~l~~Yl~~~~~~~~~~~~~~~~t~~~v~~~r~~~~~~~~~~~~r~ 126 (131)
T 1c52_A 76 KDEEIAAVLNHIATAWGDAKKVKGFKPFTAEEVKKLRAKKLTPQQVLAERK 126 (131)
T ss_dssp CHHHHHHHHHHHHHTTSTGGGSTTCCCCCHHHHHHHTTSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCccCCCCCCCCCHHHHHHHHhccCCHHHHHHHHH
Confidence 4456777788888888765 455677888777766554 5555553
No 181
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=20.50 E-value=80 Score=26.93 Aligned_cols=32 Identities=13% Similarity=0.112 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 466 IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 466 VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+..|++.|...|+.++.+.|++.++.+.|-++
T Consensus 86 ~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~ 117 (146)
T 3fh2_A 86 AKKVLELSLREGLQMGHKYIGTEFLLLGLIRE 117 (146)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhC
Confidence 35678889999999999999999999998654
No 182
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.18 E-value=85 Score=32.72 Aligned_cols=42 Identities=17% Similarity=0.296 Sum_probs=33.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHhhhcCCCCccchhHHHHHhhc
Q 007852 456 DLLLEIADDF----IDSVTSFACNLAKHRKSSTLESKDILLHLEKN 497 (587)
Q Consensus 456 ELLLeIADDF----VdsVvt~ACrLAKHRKSdTLEvKDVQLhLERn 497 (587)
+.|.+.++.| |..||..|+.+|-.++.+.|+.+|+.-.|+|-
T Consensus 377 ~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v 422 (437)
T 4b4t_L 377 EAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKV 422 (437)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 3455554443 77899999999988999999999999888873
Done!