Query 007854
Match_columns 587
No_of_seqs 204 out of 824
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 12:09:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007854.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/007854hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 24.5 16 0.0011 32.4 2.2 117 123-252 12-130 (173)
2 d2bm3a1 b.2.2.2 (A:5-166) Scaf 24.1 9.8 0.00071 33.5 0.7 11 60-70 41-51 (162)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 18.6 34 0.0025 20.9 2.2 20 293-312 5-24 (27)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 17.4 17 0.0012 26.6 0.6 39 124-164 16-54 (57)
5 d1or7a2 a.177.1.1 (A:-1-111) S 12.5 51 0.0037 25.6 2.5 24 545-568 73-96 (113)
6 d1f2qa2 b.1.1.4 (A:86-174) IgE 8.5 84 0.0061 23.2 2.3 31 389-419 46-76 (89)
7 d1iray2 b.1.1.4 (Y:102-204) Ty 8.2 84 0.0061 24.2 2.3 26 391-416 57-82 (103)
8 d1jl0a_ d.156.1.1 (A:) S-adeno 7.6 71 0.0052 30.7 1.8 29 509-537 120-148 (325)
9 d1ug8a_ d.68.7.1 (A:) Poly(A)- 7.2 85 0.0062 24.6 1.7 21 422-442 8-28 (87)
10 d1f97a1 b.1.1.1 (A:27-128) Jun 6.5 86 0.0063 23.2 1.5 25 394-418 67-91 (102)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=24.52 E-value=16 Score=32.36 Aligned_cols=117 Identities=11% Similarity=0.098 Sum_probs=66.8
Q ss_pred HHHHHHhccc--hhhhccCCCcccCcccccccCcchHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHhCCCCceeEeeCC
Q 007854 123 PCLLLAYMGQ--AAYLMKYPDSANRIFYDSVPDSLFWPVFVLAALAAMIASQAMISATFSCIKQAMALGCFPRLKIIHTS 200 (587)
Q Consensus 123 P~Lll~Y~GQ--~A~l~~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qa~~Lg~fPr~kivhTS 200 (587)
|-|+++.+|+ +|+++.+-|+.-+-+- -=..+.|+ ++-++.-++||+.. ++-+++++|..-+-. .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~---~La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVT---ALAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTT---SCCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4455555554 4666665444333221 12356776 67788889999874 889999999643211 11
Q ss_pred CccCCccccchHHHHHHHHhheeeEEeCCchhHHhhhhchhhhHHHHHHHHH
Q 007854 201 RKRMGQIYIPVINWFLMIMCVVVVSIFQSTTDIANAYGIAEVGVMLVSSTLV 252 (587)
Q Consensus 201 ~~~~GQIYiP~vNw~Lmi~~i~v~~~F~~s~~l~~AYGiaV~~~m~iTT~L~ 252 (587)
+...-++.+-.+|=+.+...+.....+.+...++-+=|++...+|.+.+++=
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G 130 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVG 130 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2223456667777666555544444455555555555555555555555543
No 2
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=24.14 E-value=9.8 Score=33.47 Aligned_cols=11 Identities=45% Similarity=0.782 Sum_probs=4.9
Q ss_pred cCcceeeecCh
Q 007854 60 YDISVVRAFNP 70 (587)
Q Consensus 60 ~~p~Vl~A~nP 70 (587)
|||.||+|.||
T Consensus 41 YDP~vLQ~Vn~ 51 (162)
T d2bm3a1 41 YDPKVLMAVDP 51 (162)
T ss_dssp CCTTTEEEECT
T ss_pred eCHHHhccccc
Confidence 44444444444
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=18.61 E-value=34 Score=20.94 Aligned_cols=20 Identities=25% Similarity=0.712 Sum_probs=16.0
Q ss_pred ccHHHHHHHHHHHHHHHhhH
Q 007854 293 GWLPLAFASVFLCVMYIWNY 312 (587)
Q Consensus 293 GW~pl~ia~~~~~iM~~W~~ 312 (587)
||+.|+.-+.-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888888777888888854
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=17.36 E-value=17 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=25.4
Q ss_pred HHHHHhccchhhhccCCCcccCcccccccCcchHHHHHHHH
Q 007854 124 CLLLAYMGQAAYLMKYPDSANRIFYDSVPDSLFWPVFVLAA 164 (587)
Q Consensus 124 ~Lll~Y~GQ~A~l~~~p~~~~npFf~~~P~~~~~P~~vlAt 164 (587)
++++--++=+.|+.++.. ++.-|.++|+.++|-++-+.|
T Consensus 16 ~i~i~~~s~~~y~~E~~~--~~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 16 VIVLLAGSYLAVLAERGA--PGAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHTTS--TTCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhcCC--CCccccccchhhhhheeeeec
Confidence 444444555667777643 334599999999997765543
No 5
>d1or7a2 a.177.1.1 (A:-1-111) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=12.52 E-value=51 Score=25.61 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=20.9
Q ss_pred CChhHHHHHHHHHHHHhhhccCCC
Q 007854 545 SFFLKKLVINYFYAFLRRNCRAGA 568 (587)
Q Consensus 545 Ss~lKK~vIn~~Y~FLRkNcR~~~ 568 (587)
.+|+.+++-|.+.+++|++-|.+.
T Consensus 73 ~~wl~~I~~n~~~d~~R~~~r~~~ 96 (113)
T d1or7a2 73 YTWLYRIAVNTAKNYLVAQGRRPP 96 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCC
Confidence 467999999999999999998654
No 6
>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.50 E-value=84 Score=23.19 Aligned_cols=31 Identities=10% Similarity=0.085 Sum_probs=24.0
Q ss_pred CCCceEEEEEecCCCCcEEEEEEEEeecccc
Q 007854 389 RLEERFLFRRVGPKDYHMFRCVTRYGYKDVR 419 (587)
Q Consensus 389 ~~~eR~~v~~l~~~~~~~yr~vvryGY~d~~ 419 (587)
....++.+..+...+.|.|+|.++.|+.+..
T Consensus 46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~ 76 (89)
T d1f2qa2 46 YENHNISITNATVEDSGTYYCTGKVWQLDYE 76 (89)
T ss_dssp CCSSEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred cccceEEEeeeeeecCcEEEEEEEeCCCCeE
Confidence 3445688888888788999999998876543
No 7
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.19 E-value=84 Score=24.23 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=20.9
Q ss_pred CceEEEEEecCCCCcEEEEEEEEeec
Q 007854 391 EERFLFRRVGPKDYHMFRCVTRYGYK 416 (587)
Q Consensus 391 ~eR~~v~~l~~~~~~~yr~vvryGY~ 416 (587)
+..+.|..+...+.|.|+|++++.|.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 44677888888888999999998764
No 8
>d1jl0a_ d.156.1.1 (A:) S-adenosylmethionine decarboxylase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.65 E-value=71 Score=30.69 Aligned_cols=29 Identities=14% Similarity=0.147 Sum_probs=25.0
Q ss_pred CCCCccHHHHHHHHHHHHhCCcEEEeeec
Q 007854 509 LDEDPSLEYELSALREAIDSGFTYLLAHG 537 (587)
Q Consensus 509 ~~~~~~v~eEl~~L~~A~eaGVvYIlG~s 537 (587)
...+.+-++|.+.|++....|..|++|+-
T Consensus 120 ~~pH~sf~~Ev~~L~~~f~~G~aY~~G~~ 148 (325)
T d1jl0a_ 120 GYPHRNFQEEIEFLNAIFPNGAGYCMGRM 148 (325)
T ss_dssp CTTCSSHHHHHHHHHTTCSSEEEEEESCT
T ss_pred CcccCCHHHHHHHHHHhCCCCceEEecCC
Confidence 33457799999999999999999999975
No 9
>d1ug8a_ d.68.7.1 (A:) Poly(A)-specific ribonuclease PARN {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.17 E-value=85 Score=24.64 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHHHHhh
Q 007854 422 DHHVFEQLLVASLEKFLRKEA 442 (587)
Q Consensus 422 ~~~~fe~~li~~L~~FI~~E~ 442 (587)
|..+|.++++++|.+|++.|.
T Consensus 8 d~k~fI~~v~erIe~fL~see 28 (87)
T d1ug8a_ 8 DQKKFIDQVIEKIEDFLQSEE 28 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHCSS
T ss_pred hHHHHHHHHHHHHHHHHcCcc
No 10
>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.53 E-value=86 Score=23.17 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=0.0
Q ss_pred EEEEEecCCCCcEEEEEEEEeeccc
Q 007854 394 FLFRRVGPKDYHMFRCVTRYGYKDV 418 (587)
Q Consensus 394 ~~v~~l~~~~~~~yr~vvryGY~d~ 418 (587)
..+..+...+.|.|+|.++..+...
T Consensus 67 L~I~~v~~~D~G~Y~C~a~n~~g~~ 91 (102)
T d1f97a1 67 ITFSSVTRKDNGEYTCMVSEEGGQN 91 (102)
T ss_dssp EEESCCCGGGCEEEEEEEEETTSSS
T ss_pred EEEeECCccCCEEEEEEEEECCCCE
Done!