BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007855
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 154/320 (48%), Gaps = 16/320 (5%)
Query: 259 EEKDYQGRSWVAPPKDAKAANDHCYIPKR----LVHTWSGHTKGVSAIRFFPKYGHLILS 314
EEK + + A P + +A P + L T +GHTK VS+++F P G + S
Sbjct: 4 EEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPN-GEWLAS 62
Query: 315 AGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374
+ D +KIW ++ GK +T GH + D+++ +D ++AS DK +K WD +G+
Sbjct: 63 SSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 121
Query: 375 IRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 432
++T G YV NP + N++++G D+ + WD+ T + + H V+ +
Sbjct: 122 LKTLK-GHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 177
Query: 433 TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 492
F + V+SS D R+W+ +K + + + + PN ++ A +LDN
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 237
Query: 493 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVF 551
+ ++ + L K + GH Y NFS G++++SG + + W+ ++ ++
Sbjct: 238 LKLWDYSKGKCL---KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 552 RTLKCHEGVCIGCEWHPLEQ 571
+ L+ H V I HP E
Sbjct: 295 QKLQGHTDVVISTACHPTEN 314
Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 120 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 177
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 178 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 234
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 235 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 294
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495
+ + + H + S + HP N +A+ +L+N I
Sbjct: 295 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 327
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 122 bits (307), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 85/320 (26%), Positives = 154/320 (48%), Gaps = 16/320 (5%)
Query: 259 EEKDYQGRSWVAPPKDAKAANDHCYIPKR----LVHTWSGHTKGVSAIRFFPKYGHLILS 314
EEK + + A P + +A P + L T +GHTK VS+++F P G + S
Sbjct: 6 EEKKPETEAARAQPTPSSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPN-GEWLAS 64
Query: 315 AGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374
+ D +KIW ++ GK +T GH + D+++ +D ++AS DK +K WD +G+
Sbjct: 65 SSADKLIKIWGAYD-GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC 123
Query: 375 IRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 432
++T G YV NP + N++++G D+ + WD+ T + + H V+ +
Sbjct: 124 LKTLK-GHSNYVFCCNFNP---QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAV 179
Query: 433 TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 492
F + V+SS D R+W+ +K + + + + PN ++ A +LDN
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT 239
Query: 493 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKSCKVF 551
+ ++ + L K + GH Y NFS G++++SG + + W+ ++ ++
Sbjct: 240 LKLWDYSKGKCL---KTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 552 RTLKCHEGVCIGCEWHPLEQ 571
+ L+ H V I HP E
Sbjct: 297 QKLQGHTDVVISTACHPTEN 316
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 122 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 179
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 180 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 236
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 237 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 296
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495
+ + + H + S + HP N +A+ +L+N I
Sbjct: 297 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 329
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L+ T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + H V+ + F + V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +G C++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAV 158
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNDLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALEN 304
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L+ T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 18 LMFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + H V+ + F + V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 101/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +G C++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGMCLKTLPAHSDPVSAV 158
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIV 275
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALEN 304
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 78
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 134
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 251
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 161
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 218
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 279 QKL-QGHTDVVISTACHPTENIIASAALEN 307
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 120 bits (300), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 78
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 134
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 251
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 161
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 218
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 279 QKL-QGHTDVVISTACHPTENIIASAALEN 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 21 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 78
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 79 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 134
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 135 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 194
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 195 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 251
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 252 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 298
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 103/214 (48%), Gaps = 11/214 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 104 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 161
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 162 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 218
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 219 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 278
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495
+ + + H + S + HP N +A+ +L+N I
Sbjct: 279 QKL-QGHTDVVISTACHPTENIIASAALENDKTI 311
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 20 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 77
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 78 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 133
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 134 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 193
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 194 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 250
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 251 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 297
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 103 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 160
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 161 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 217
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 218 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 277
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 278 QKL-QGHTDVVISTACHPTENIIASAALEN 306
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 16 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 73
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 74 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 129
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 130 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 189
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 190 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 246
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 247 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 293
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 99 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 156
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 157 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 213
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 214 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 273
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 274 QKL-QGHTDVVISTACHPTENIIASAALEN 302
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 72
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 128
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 245
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 155
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 212
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 273 QKL-QGHTDVVISTACHPTENIIASAALEN 301
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 120 bits (300), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 15 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 72
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 73 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 128
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 129 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 188
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 189 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 245
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 246 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 292
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 98 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 155
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 156 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 212
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 213 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 272
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 273 QKL-QGHTDVVISTACHPTENIIASAALEN 301
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 11 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 68
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 69 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 124
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 125 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 184
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 185 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 241
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 242 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 288
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 94 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 151
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 152 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 208
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 209 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 268
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 269 QKL-QGHTDVVISTACHPTENIIASAALEN 297
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 158
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALEN 304
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 32 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 89
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 90 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 145
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 146 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 205
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 206 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 262
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 263 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 309
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 115 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 172
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 173 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 229
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 230 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 289
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 290 QKL-QGHTDVVISTACHPTENIIASAALEN 318
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 119 bits (299), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 14 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 71
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 72 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 127
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 128 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 187
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 188 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 244
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 245 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 291
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 97 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 154
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 155 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 211
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 212 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 271
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 272 QKL-QGHTDVVISTACHPTENIIASAALEN 300
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 119 bits (298), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 78/287 (27%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + S+ D +KIW ++ GK +T GH + D++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 158
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALEN 304
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 118 bits (296), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 142/287 (49%), Gaps = 12/287 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T +GHTK VS+++F P G + ++ D +KIW ++ GK +T GH + D++
Sbjct: 18 LKFTLAGHTKAVSSVKFSPN-GEWLAASSADKLIKIWGAYD-GKFEKTISGHKLGISDVA 75
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSD 405
+ +D ++AS DK +K WD +G+ ++T G YV NP + N++++G D
Sbjct: 76 WSSDSNLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNP---QSNLIVSGSFD 131
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
+ + WD+ T + + H V+ + F + V+SS D R+W+ +K +
Sbjct: 132 ESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLI 191
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ + + PN ++ A +LDN + ++ + L K + GH Y NFS
Sbjct: 192 DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL---KTYTGHKNEKYCIFANFS 248
Query: 526 -PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571
G++++SG + + W+ ++ ++ + L+ H V I HP E
Sbjct: 249 VTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTEN 295
Score = 90.1 bits (222), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 102/210 (48%), Gaps = 11/210 (5%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+ + T GH+ V F P+ +LI+S D V+IWDV +GKC++T HS V +
Sbjct: 101 KCLKTLKGHSNYVFCCNFNPQ-SNLIVSGSFDESVRIWDV-KTGKCLKTLPAHSDPVSAV 158
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
F DG+ +++SYD + WDT +GQ ++T P V VK +P+ +LA
Sbjct: 159 HFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG---KYILAATL 215
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITF---VDNNRRFVTSSDDKSLRVWEFGIPVVI 461
D + WD + + + Y H I V + V+ S+D + +W ++
Sbjct: 216 DNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV 275
Query: 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
+ + + H + S + HP N +A+ +L+N
Sbjct: 276 QKL-QGHTDVVISTACHPTENIIASAALEN 304
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 105 bits (263), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 82/307 (26%), Positives = 149/307 (48%), Gaps = 29/307 (9%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+L+ T +GH+ V + F P G I SA D VK+W+ +G+ ++T GHS +VR +
Sbjct: 48 QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVRGV 104
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMS 404
+F DG +AS DK +K W+ GQ+++T TG V V +PD +A S
Sbjct: 105 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVWGVAFSPDGQT----IASAS 158
Query: 405 DKKIVQ-WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKY 463
D K V+ W+ N ++ Q H +V + F + + ++SDDK++++W ++
Sbjct: 159 DDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL 217
Query: 464 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523
H S+ ++ P+ +A+ S D + ++ N+ + + G++ VN
Sbjct: 218 TG--HSSSVRGVAFSPDGQTIASASDDKTVKLW--------NRNGQLL-QTLTGHSSSVN 266
Query: 524 ---FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580
F PDG+ + S + W+ ++ ++ +TL H G + P Q+ +A+ D
Sbjct: 267 GVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDD 324
Query: 581 GLIKYWD 587
+K W+
Sbjct: 325 KTVKLWN 331
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 147/302 (48%), Gaps = 19/302 (6%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+L+ T +GH+ V + F P G I SA D VK+W+ +G+ ++T GHS +V +
Sbjct: 294 QLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWN--RNGQHLQTLTGHSSSVWGV 350
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 406
+F DG +AS DK +K W+ GQ+++T TG V + D Q I A SD
Sbjct: 351 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTI--ASASDD 406
Query: 407 KIVQ-WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
K V+ W+ N ++ Q H +V + F +++ ++SDDK++++W ++
Sbjct: 407 KTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTG 465
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
H S+ ++ P+ +A+ S D + +++ + + GH + V FS
Sbjct: 466 --HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFS 517
Query: 526 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585
PDG+ + S + W+ ++ ++ +TL H G + P Q+ +A+ D +K
Sbjct: 518 PDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASSDKTVKL 575
Query: 586 WD 587
W+
Sbjct: 576 WN 577
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 78/294 (26%), Positives = 140/294 (47%), Gaps = 19/294 (6%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTK 354
H+ V + F P G I SA D VK+W+ +G+ ++T GHS +V ++F DG
Sbjct: 15 HSSSVRGVAFSPD-GQTIASASDDKTVKLWN--RNGQLLQTLTGHSSSVWGVAFSPDGQT 71
Query: 355 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ-WDM 413
+AS DK +K W+ GQ+++T TG V + D Q I A SD K V+ W+
Sbjct: 72 IASASDDKTVKLWN-RNGQLLQTL-TGHSSSVRGVAFSPDGQTI--ASASDDKTVKLWNR 127
Query: 414 NTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 473
N ++ Q H +V + F + + ++SDDK++++W ++ H S+
Sbjct: 128 N-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSVW 184
Query: 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 533
++ P+ +A+ S D + +++ + + GH + V FSPDG+ + S
Sbjct: 185 GVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFSPDGQTIAS 238
Query: 534 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ W+ ++ ++ +TL H G + P Q+ +A+ D +K W+
Sbjct: 239 ASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQT-IASASDDKTVKLWN 290
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/175 (21%), Positives = 78/175 (44%), Gaps = 11/175 (6%)
Query: 413 MNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 472
M KE + H +V + F + + ++SDDK++++W ++ H S+
Sbjct: 4 MGVKE-RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG--HSSSV 60
Query: 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532
++ P+ +A+ S D + +++ + + GH + V FSPDG+ +
Sbjct: 61 WGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGH--SSSVRGVAFSPDGQTIA 114
Query: 533 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
S + W+ ++ ++ +TL H G + P Q+ +A+ D +K W+
Sbjct: 115 SASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKLWN 167
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 89.4 bits (220), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 134/317 (42%), Gaps = 35/317 (11%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG 352
SGH V+ + F P + +++SA D +K+WD + +G RT GH+ +V+DISF + G
Sbjct: 105 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWD-YETGDFERTLKGHTDSVQDISFDHSG 162
Query: 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQ 410
+ S D IK WD + + IRT G V V + P+ D +++ DK I
Sbjct: 163 KLLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDH---IVSASRDKTIKM 218
Query: 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 470
W++ T + + H V + + + S+D+++RVW + E H H
Sbjct: 219 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-HRH 277
Query: 471 SMPSISLHPNTNW--------------------LAAQSLDNQILIYSTRERFQLNKKKRF 510
+ IS P +++ L + S D I ++ L
Sbjct: 278 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMT---L 334
Query: 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 570
GH + V F G+F++S + WD+K+ + +TL HE ++H
Sbjct: 335 VGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT- 391
Query: 571 QSKVATCGWDGLIKYWD 587
V T D +K W+
Sbjct: 392 APYVVTGSVDQTVKVWE 408
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 57/229 (24%), Positives = 102/229 (44%), Gaps = 21/229 (9%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
+ T GH VS++ P H I+SA D +K+W+V +G C++T+ GH + VR +
Sbjct: 185 IRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEV-QTGYCVKTFTGHREWVRMVRP 242
Query: 349 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNI--------- 398
DGT + S D+ ++ W T + + + + P+ +I
Sbjct: 243 NQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETK 302
Query: 399 --------LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSL 450
LL+G DK I WD++T H V + F + ++ +DDK+L
Sbjct: 303 KSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTL 362
Query: 451 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499
RVW++ +K ++ H H + S+ H ++ S+D + ++ R
Sbjct: 363 RVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/171 (32%), Positives = 86/171 (50%), Gaps = 17/171 (9%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
+H GH V+A+R G ++S D VK+WD + C+ T GH+ V + F
Sbjct: 232 LHVLMGH---VAAVRCVQYDGRRVVSGAYDFMVKVWDP-ETETCLHTLQGHTNRVYSLQF 287
Query: 349 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 408
DG ++ S D +I+ WD ETG I T TG + D NIL++G +D +
Sbjct: 288 --DGIHVVSGSLDTSIRVWDVETGNCIHTL-TGHQSLTSGMELKD---NILVSGNADSTV 341
Query: 409 VQWDMNTKEITQEY---DQHLGAVNTITFVDNNRRFV-TSSDDKSLRVWEF 455
WD+ T + Q ++H AV + F N+ FV TSSDD ++++W+
Sbjct: 342 KIWDIKTGQCLQTLQGPNKHQSAVTCLQF---NKNFVITSSDDGTVKLWDL 389
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 93/208 (44%), Gaps = 12/208 (5%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
+HT GHT V + K ++S D +++WD+ +G+C+ MGH AVR + +
Sbjct: 192 IHTLYGHTSTVRCMHLHEKR---VVSGSRDATLRVWDI-ETGQCLHVLMGHVAAVRCVQY 247
Query: 349 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 408
DG + ++ +YD +K WD ET + T G V L D +++G D I
Sbjct: 248 --DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQFDGIH---VVSGSLDTSI 301
Query: 409 VQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 468
WD+ T H + + DN V+ + D ++++W+ ++ + P+
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 469 MHSMPSISLHPNTNWLAAQSLDNQILIY 496
H L N N++ S D + ++
Sbjct: 360 KHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 127/284 (44%), Gaps = 29/284 (10%)
Query: 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368
G+ I+S D +K+W +GKC+RT +GH+ V ++ ++ S D+ +K W+
Sbjct: 129 GNRIVSGSDDNTLKVWSAV-TGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWN 185
Query: 369 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 428
ETG+ I T G V ++ + + +++G D + WD+ T + H+ A
Sbjct: 186 AETGECIHTLY-GHTSTVRCMHLHEKR---VVSGSRDATLRVWDIETGQCLHVLMGHVAA 241
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V + + + RR V+ + D ++VW+ P + H+ SL + + + S
Sbjct: 242 VRCVQY--DGRRVVSGAYDFMVKVWD---PETETCLHTLQGHTNRVYSLQFDGIHVVSGS 296
Query: 489 LDNQILIYSTRERFQLNKKKRFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546
LD I ++ N GH + +G + N ++SG+ + WD K
Sbjct: 297 LDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKDN------ILVSGNADSTVKIWDIK 347
Query: 547 SCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ + +TL+ H+ +++ ++ V T DG +K WD
Sbjct: 348 TGQCLQTLQGPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWD 388
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 9/95 (9%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG---HSKAVRD 345
+HT +GH S + ++++S D+ VKIWD+ +G+C++T G H AV
Sbjct: 312 IHTLTGHQSLTSGMEL---KDNILVSGNADSTVKIWDI-KTGQCLQTLQGPNKHQSAVTC 367
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 380
+ F + +T+S D +K WD +TG+ IR T
Sbjct: 368 LQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVT 400
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 114/298 (38%), Gaps = 58/298 (19%)
Query: 305 FPKYGHLILSAGMDTKVKIWDVFNSGK------CMRTYMGHSKAVRDISFCNDG-TKFLT 357
F G + G+D+ I+++ + R GH + D T+ +T
Sbjct: 116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLIT 175
Query: 358 ASYDKNIKYWDTETGQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 413
S D+ WD TGQ I F + G V+ L+ + N+ ++G D + WD+
Sbjct: 176 GSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDL 235
Query: 414 N-TKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 472
T + Y H G +N++ F + +RF T SDD + R+++ H +
Sbjct: 236 RITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG-----------HQL 284
Query: 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532
+ P+ N DN++ I ++ V FS GR +
Sbjct: 285 QVYNREPDRN-------DNELPIVTS-----------------------VAFSISGRLLF 314
Query: 533 SGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586
+G G C+ WD ++ L HEG I C + S + T WD +K W
Sbjct: 315 AGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGR-ISCLGLSSDGSALCTGSWDKNLKIW 371
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 79/173 (45%), Gaps = 11/173 (6%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG 352
SGHT V ++ ++ +S DT V++WD+ + + +RTY GH + + F DG
Sbjct: 202 SGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG 261
Query: 353 TKFLTASYDKNIKYWDTETGQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSDK 406
+F T S D + +D TG ++ ++ ++P V + + +L AG S+
Sbjct: 262 QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGR-LLFAGYSNG 320
Query: 407 KIVQWDMNTKEITQEY----DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455
WD E+ + H G ++ + + T S DK+L++W F
Sbjct: 321 DCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAF 373
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 57/129 (44%), Gaps = 12/129 (9%)
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525
+ H + S+ P NW+ + S D ++++++ L +K A + + + F+
Sbjct: 63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNA-----LTSQKTHAIKLHCPWVMECAFA 117
Query: 526 PDGRFVMSGDGEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578
P+G+ V G + C ++ S V R L H+G C++ P +++++ T
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 579 WDGLIKYWD 587
D WD
Sbjct: 178 GDQTCVLWD 186
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 107/244 (43%), Gaps = 30/244 (12%)
Query: 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410
D K ++ D IK WD T + R TG V+ L D + +++ G SD +
Sbjct: 142 DDQKIVSGLRDNTIKIWDKNTLECKRIL-TGHTGSVLCLQYD---ERVIITGSSDSTVRV 197
Query: 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 468
WD+NT E+ H AV + F NN VT S D+S+ VW+ P + ++ + H
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH 255
Query: 469 MHSMPSISLHPNTNWLAAQSLDNQILIY--STRERFQ-LNKKKRFAGHIVAGYACQVNFS 525
++ + + ++ + S D I ++ ST E + LN KR G AC
Sbjct: 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-------GIAC---LQ 303
Query: 526 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV--CIGCEWHPLEQSKVATCGWDGLI 583
R V+SG + WD + R L+ HE + CI + ++ + +DG I
Sbjct: 304 YRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI-----RFDNKRIVSGAYDGKI 358
Query: 584 KYWD 587
K WD
Sbjct: 359 KVWD 362
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 6/81 (7%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
V T +GH +G++ +++ + L++S D +++WD+ G C+R GH + VR I
Sbjct: 288 FVRTLNGHKRGIACLQYRDR---LVVSGSSDNTIRLWDI-ECGACLRVLEGHEELVRCIR 343
Query: 348 FCNDGTKFLTASYDKNIKYWD 368
F D + ++ +YD IK WD
Sbjct: 344 F--DNKRIVSGAYDGKIKVWD 362
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS--------GKCMRTYMGHSKAVRD 345
GH + V IRF K I+S D K+K+WD+ + C+RT + HS V
Sbjct: 334 GHEELVRCIRFDNKR---IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFR 390
Query: 346 ISFCNDGTKFLTASYDKNIKYWD 368
+ F D + +++S+D I WD
Sbjct: 391 LQF--DEFQIVSSSHDDTILIWD 411
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 57/300 (19%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------------------------- 378
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 379 STGKIPYV-----------------VKLNP----DDDKQNILLAGMSDKKIVQWDMNTKE 417
T K+ + V++ P DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477
I ++ H +NT+T + ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 478 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 534
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSAAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 52/236 (22%)
Query: 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 428
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V T + +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 489 LDNQILIYSTR-----------------------------------------ERFQLNKK 507
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 508 KRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 57/300 (19%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------------------------- 378
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 379 STGKIPYV-----------------VKLNP----DDDKQNILLAGMSDKKIVQWDMNTKE 417
T K+ + V++ P DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477
I ++ H +NT+T + ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 478 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 534
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 52/236 (22%)
Query: 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 428
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V T + +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 489 LDNQILIYSTR-----------------------------------------ERFQLNKK 507
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 508 KRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 57/300 (19%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------------------------- 378
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 122
Query: 379 STGKIPYV-----------------VKLNP----DDDKQNILLAGMSDKKIVQWDMNTKE 417
T K+ + V++ P DDD I+ AG +DK + W++N +
Sbjct: 123 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 181
Query: 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477
I ++ H +NT+T + ++ D + +W + +S + S++
Sbjct: 182 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 239
Query: 478 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 534
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 240 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 298
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 52/236 (22%)
Query: 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 428
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V T + +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 120
Query: 489 LDNQILIYSTR-----------------------------------------ERFQLNKK 507
D I +++ + + + LN+
Sbjct: 121 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 180
Query: 508 KRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 181 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 234
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 57/300 (19%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------------------------- 378
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 379 STGKIPYV-----------------VKLNP----DDDKQNILLAGMSDKKIVQWDMNTKE 417
T K+ + V++ P DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477
I ++ H +NT+T + ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 478 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 534
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 52/236 (22%)
Query: 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 428
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V T + +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 489 LDNQILIYSTR-----------------------------------------ERFQLNKK 507
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 508 KRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 127/300 (42%), Gaps = 57/300 (19%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------------------------- 378
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRD 128
Query: 379 STGKIPYV-----------------VKLNP----DDDKQNILLAGMSDKKIVQWDMNTKE 417
T K+ + V++ P DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKMVKAWNLNQFQ 187
Query: 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477
I ++ H +NT+T + ++ D + +W + +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAF 245
Query: 478 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 534
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 42/236 (17%), Positives = 83/236 (35%), Gaps = 52/236 (22%)
Query: 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 428
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V T + +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGS 126
Query: 489 LDNQILIYSTR-----------------------------------------ERFQLNKK 507
D I +++ + + + LN+
Sbjct: 127 RDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF 186
Query: 508 KRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560
+ A I G+ +N SPDG + S +G+ W+ + K TL + V
Sbjct: 187 QIEADFI--GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDEV 240
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 70/300 (23%), Positives = 126/300 (42%), Gaps = 57/300 (19%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T GH V+++ +L+LSA D + W + G +R++ GHS V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------------------------- 378
+D + DG L+AS+DK ++ WD TG+ + F
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRD 128
Query: 379 STGKIPYV-----------------VKLNP----DDDKQNILLAGMSDKKIVQWDMNTKE 417
T K+ + V++ P DDD I+ AG +DK + W++N +
Sbjct: 129 KTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG-NDKXVKAWNLNQFQ 187
Query: 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477
I ++ H +NT+T + ++ D + +W +S + S++
Sbjct: 188 IEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSA--QDEVFSLAF 245
Query: 478 HPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVAG--YACQVNFSPDGRFVMSG 534
PN WLAA + I ++S ++ ++ + FAG+ A +A + +S DG+ + +G
Sbjct: 246 SPNRYWLAAATATG-IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAG 304
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/131 (19%), Positives = 54/131 (41%), Gaps = 6/131 (4%)
Query: 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-----TQEYDQHLGA 428
V+R G +V L + N+LL+ DK ++ W + + + + H
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
V T + +++S DK+LR+W+ + H + S+ + + + + S
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFV-GHKSDVXSVDIDKKASXIISGS 126
Query: 489 LDNQILIYSTR 499
D I +++ +
Sbjct: 127 RDKTIKVWTIK 137
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 61/243 (25%), Positives = 106/243 (43%), Gaps = 14/243 (5%)
Query: 299 VSAIRFFPKYGHLILSAGMDTKVKIWDV-FNSGKCM----RTYMGHSKAVRDISFCNDGT 353
V A + P G I G+D K ++ + F+ + M ++ H+ + SF N
Sbjct: 109 VMACAYAPS-GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM 167
Query: 354 KFLTASYDKNIKYWDTETGQVIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 412
+ LTAS D WD E+GQ++++F G + L P + N ++G DKK + WD
Sbjct: 168 QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE-TGNTFVSGGCDKKAMVWD 226
Query: 413 MNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHS 471
M + + Q ++ H VN++ + + F + SDD + R+++ V Y E +
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 531
S+ + L A D I ++ + + ++ GH + SPDG
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVW---DVLKGSRVSILFGH--ENRVSTLRVSPDGTAF 341
Query: 532 MSG 534
SG
Sbjct: 342 CSG 344
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 20/187 (10%)
Query: 410 QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 469
Q+ M T+ + H V + + + RR V+SS D + VW+ ++ H
Sbjct: 51 QFVMKTRRTLK---GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT------NKEHA 101
Query: 470 HSMP-----SISLHPNTNWLAAQSLDNQILIYST---RERFQLNKKKRFAGHIVAGYACQ 521
+MP + + P+ +A LDN+ +Y + KKK A H Y
Sbjct: 102 VTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMH--TNYLSA 159
Query: 522 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV-ATCGWD 580
+F+ +++ G+G C WD +S ++ ++ H + + P E + G D
Sbjct: 160 CSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCD 219
Query: 581 GLIKYWD 587
WD
Sbjct: 220 KKAMVWD 226
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 62/304 (20%), Positives = 106/304 (34%), Gaps = 53/304 (17%)
Query: 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET------------------- 371
K RT GH V + +C D + +++S D + WD+ T
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 372 ---GQVIRTFSTGKIPYVVKLNPDDDKQ------------NILLAGM---SDKKIVQ--- 410
G I V L D ++ N L A SD +I+
Sbjct: 115 APSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG 174
Query: 411 ------WDMNTKEITQEYDQHLGAVNTITFV--DNNRRFVTSSDDKSLRVWEFGIPVVIK 462
WD+ + ++ Q + H V + + FV+ DK VW+ ++
Sbjct: 175 DGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234
Query: 463 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522
E H + S+ +P+ + A+ S D +Y R ++ + + I+ G A V
Sbjct: 235 AF-ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKES--IIFG-ASSV 290
Query: 523 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 582
+FS GR + +G + WD L HE P + + + WD
Sbjct: 291 DFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHT 349
Query: 583 IKYW 586
++ W
Sbjct: 350 LRVW 353
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 33/272 (12%)
Query: 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358
+ ++ F P G + + D ++IWD+ N K + GH + + + + G K ++
Sbjct: 126 IRSVCFSPD-GKFLATGAEDRLIRIWDIENR-KIVMILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 359 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418
S D+ ++ WD TGQ T S V ++P D K + AG D+ + WD T +
Sbjct: 184 SGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSLDRAVRVWDSETGFL 241
Query: 419 TQEYDQ-------HLGAVNTITFVDNNRRFVTSSDDKSLRVWEF-------------GIP 458
+ D H +V ++ F + + V+ S D+S+++W
Sbjct: 242 VERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 301
Query: 459 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH----I 514
+ YI H + S++ N ++ + S D +L + + N GH I
Sbjct: 302 CEVTYIG--HKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVI 356
Query: 515 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546
A + P+ +G G+ K W +K
Sbjct: 357 SVAVANGSSLGPEYNVFATGSGDCKARIWKYK 388
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 93/236 (39%), Gaps = 21/236 (8%)
Query: 343 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLA 401
+R + F DG T + D+ I+ WD E +++ + Y + P DK L++
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK---LVS 182
Query: 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVI 461
G D+ + WD+ T + + G + + S D+++RVW+ ++
Sbjct: 183 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 242
Query: 462 KYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK------- 508
+ + H S+ S+ + + + SLD + +++ + + K
Sbjct: 243 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 302
Query: 509 --RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 562
+ GH + V + + +++SG + FWD KS L+ H I
Sbjct: 303 EVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVI 356
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 99/237 (41%), Gaps = 32/237 (13%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRD 345
+++V GH + + ++ +FP G ++S D V+IWD +G+C T
Sbjct: 155 RKIVMILQGHEQDIYSLDYFPS-GDKLVSGSGDRTVRIWD-LRTGQCSLTLSIEDGVTTV 212
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF------STGKIPYVVKLNPDDDKQNIL 399
DG S D+ ++ WD+ETG ++ TG V + D Q++
Sbjct: 213 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSV- 271
Query: 400 LAGMSDKKIVQWDM------------NTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447
++G D+ + W++ N+ Y H V ++ N+ ++ S D
Sbjct: 272 VSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKD 331
Query: 448 KSLRVWE--FGIPVVIKYISEPHMHSMPSI------SLHPNTNWLAAQSLDNQILIY 496
+ + W+ G P+++ + H +S+ S+ SL P N A S D + I+
Sbjct: 332 RGVLFWDKKSGNPLLML---QGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 26/182 (14%)
Query: 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR------TYMGHSKAVRDISFCND 351
GV+ + P G I + +D V++WD R + GH +V + F D
Sbjct: 208 GVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRD 267
Query: 352 GTKFLTASYDKNIKYWDTE------------TGQVIRTFSTGKIPYVVKLNPDDDKQNIL 399
G ++ S D+++K W+ + +G T+ G +V+ + + + I
Sbjct: 268 GQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYI- 325
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR------FVTSSDDKSLRVW 453
L+G D+ ++ WD + H +V ++ + + F T S D R+W
Sbjct: 326 LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIW 385
Query: 454 EF 455
++
Sbjct: 386 KY 387
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Query: 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 577
Y V FSPDG+F+ +G + WD ++ K+ L+ HE ++ P V+
Sbjct: 125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGS 184
Query: 578 GWDGLIKYWD 587
G D ++ WD
Sbjct: 185 G-DRTVRIWD 193
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 10/220 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVFNSGKCMRTYMGHSKAV 343
L T GH V+ I P++ +ILSA D + +W D N G R GHS V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 403
D+ +DG L+ S+D ++ WD TG R F G V+ + D + I ++G
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQI-VSGS 124
Query: 404 SDKKIVQWD-MNTKEITQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIPVV 460
DK I W+ + + T + + H V+ + F N N V+ DK ++VW
Sbjct: 125 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCK 183
Query: 461 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500
+K H + ++++ P+ + A+ D Q +++ E
Sbjct: 184 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 223
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 41/168 (24%)
Query: 441 FVTSSDDKSLRVWE-------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493
+++S DK++ +W+ +GIP + H H + + + + + + S D +
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYGIP---QRALRGHSHFVSDVVISSDGQFALSGSWDGTL 87
Query: 494 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 553
++ +RF GH V FS D R ++SG + K+ K++ T
Sbjct: 88 RLWDLTTG---TTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRD--------KTIKLWNT 134
Query: 554 LKCHEGVC------------IGCEWHPLEQSK--VATCGWDGLIKYWD 587
L GVC + C S + +CGWD L+K W+
Sbjct: 135 L----GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 178
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 10/220 (4%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVFNSGKCMRTYMGHSKAV 343
L T GH V+ I P++ +ILSA D + +W D N G R GHS V
Sbjct: 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 403
D+ +DG L+ S+D ++ WD TG R F G V+ + D + I ++G
Sbjct: 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF-VGHTKDVLSVAFSSDNRQI-VSGS 147
Query: 404 SDKKIVQWD-MNTKEITQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIPVV 460
DK I W+ + + T + + H V+ + F N N V+ DK ++VW
Sbjct: 148 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLA-NCK 206
Query: 461 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500
+K H + ++++ P+ + A+ D Q +++ E
Sbjct: 207 LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 68/168 (40%), Gaps = 41/168 (24%)
Query: 441 FVTSSDDKSLRVWE-------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493
+++S DK++ +W+ +GIP + H H + + + + + + S D +
Sbjct: 54 ILSASRDKTIIMWKLTRDETNYGIP---QRALRGHSHFVSDVVISSDGQFALSGSWDGTL 110
Query: 494 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 553
++ +RF GH V FS D R ++SG + K+ K++ T
Sbjct: 111 RLWDLTTG---TTTRRFVGH--TKDVLSVAFSSDNRQIVSGSRD--------KTIKLWNT 157
Query: 554 LKCHEGVC------------IGCEWHPLEQSK--VATCGWDGLIKYWD 587
L GVC + C S + +CGWD L+K W+
Sbjct: 158 L----GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWN 201
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 67/285 (23%), Positives = 107/285 (37%), Gaps = 57/285 (20%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAV 343
L T HT V+AI +I+SA D + +W + G R GHS V
Sbjct: 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFV 433
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 403
D+ +DG L+ S+D ++ WD L AG+
Sbjct: 434 EDVVLSSDGQFALSGSWDGELRLWD------------------------------LAAGV 463
Query: 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE-FG-IPVVI 461
S ++ V H V ++ F +NR+ V++S D+++++W G I
Sbjct: 464 STRRFV--------------GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI 509
Query: 462 KYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519
E H + + PNT + + S D + +++ + AGH GY
Sbjct: 510 SEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLS---NCKLRSTLAGH--TGYV 564
Query: 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 564
V SPDG SG +G WD K +L+ + + C
Sbjct: 565 STVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALC 609
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/269 (22%), Positives = 115/269 (42%), Gaps = 24/269 (8%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG 352
+GH+ V + G LS D ++++WD+ +G R ++GH+K V ++F D
Sbjct: 427 TGHSHFVEDV-VLSSDGQFALSGSWDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDN 484
Query: 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-----VVKLNPDDDKQNILLAGMSDKK 407
+ ++AS D+ IK W+T G+ T S G + V+ +P+ + I+ A DK
Sbjct: 485 RQIVSASRDRTIKLWNT-LGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW-DKT 542
Query: 408 IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467
+ W+++ ++ H G V+T+ + + D + +W+ K S
Sbjct: 543 VKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGK--KLYSLE 600
Query: 468 HMHSMPSISLHPNTNWLAAQS--------LDNQILIYSTRERFQLNKKKRFAGHIVAG-- 517
+ ++ PN WL A + L+++ ++ + + +K A
Sbjct: 601 ANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKR 660
Query: 518 ---YACQVNFSPDGRFVMSGDGEGKCWFW 543
Y +N+S DG + SG +G W
Sbjct: 661 KVIYCTSLNWSADGSTLFSGYTDGVIRVW 689
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 121/286 (42%), Gaps = 28/286 (9%)
Query: 260 EKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 319
+D SW P D ++ +P R + GH+ VS + G+ +SA D
Sbjct: 35 SRDKTLLSW-GPNPDRHSSECSYGLPDRRLE---GHSAFVSDVAL-SNNGNFAVSASWDH 89
Query: 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 379
+++W++ N G+C ++GH+K V ++F D + ++ D ++ W+ + G+ + T S
Sbjct: 90 SLRLWNLQN-GQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLS 147
Query: 380 TGKIP---YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 436
G V+ +P D ++++G D + WD+ T + + H V ++T
Sbjct: 148 RGAHTDWVSCVRFSPSLDAP-VIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSP 206
Query: 437 NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-------- 488
+ +S D R+W+ + ++ + I PN W+ A +
Sbjct: 207 DGSLCASSDKDGVARLWDLTKGEALSEMAAG--APINQICFSPNRYWMCAATEKGIRIFD 264
Query: 489 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 534
L+N+ +I Q +KK + + +S DG + SG
Sbjct: 265 LENKDIIVELAPEHQGSKK-------IVPECVSIAWSADGSTLYSG 303
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 76/213 (35%), Gaps = 51/213 (23%)
Query: 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393
R GHS V D++ N+G ++AS+D +++ W+ + GQ F
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLG------------- 107
Query: 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453
+TK++ ++ F +NR+ V+ D +LRVW
Sbjct: 108 --------------------HTKDVL-----------SVAFSPDNRQIVSGGRDNALRVW 136
Query: 454 EFGIPVVIKYISEPHMHSMPSISLHPNTN--WLAAQSLDNQILIYSTRERFQLNKKKRFA 511
+ H + + P+ + + + DN + ++ + K
Sbjct: 137 NVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLK--- 193
Query: 512 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544
GH Y V SPDG S D +G WD
Sbjct: 194 GH--TNYVTSVTVSPDGSLCASSDKDGVARLWD 224
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/161 (24%), Positives = 68/161 (42%), Gaps = 21/161 (13%)
Query: 440 RFVTSSDDKSLRVW-----------EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488
+ V++S DK+L W +G+P E H + ++L N N+ + S
Sbjct: 30 KVVSTSRDKTLLSWGPNPDRHSSECSYGLP---DRRLEGHSAFVSDVALSNNGNFAVSAS 86
Query: 489 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS- 547
D+ + +++ + + +F GH V FSPD R ++SG + W+ K
Sbjct: 87 WDHSLRLWNLQNG---QCQYKFLGH--TKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGE 141
Query: 548 CKVFRTLKCHEGVCIGCEWHP-LEQSKVATCGWDGLIKYWD 587
C + H + P L+ + + GWD L+K WD
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 124/308 (40%), Gaps = 14/308 (4%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I R T GH + A+ + L+LSA D K+ IWD + + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 399
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV 459
+G D WD+ T + T + H G V +++ + R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 460 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 580 DGLIKYWD 587
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 74/308 (24%), Positives = 124/308 (40%), Gaps = 14/308 (4%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I R T GH + A+ + L+LSA D K+ IWD + + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 399
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV 459
+G D WD+ T + T + H G V +++ + R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 460 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 580 DGLIKYWD 587
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 14/308 (4%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I R T GH + A+ + L++SA D K+ IWD + + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 399
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV 459
+G D WD+ T + T + H G V +++ + R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 460 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 580 DGLIKYWD 587
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 14/308 (4%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I R T GH + A+ + L++SA D K+ IWD + + K + S V
Sbjct: 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 100
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 399
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 159
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV 459
+G D WD+ T + T + H G V +++ + R FV+ + D S ++W+ +
Sbjct: 160 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217
Query: 460 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 218 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 274
Query: 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 275 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 332
Query: 580 DGLIKYWD 587
D +K W+
Sbjct: 333 DSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 124/308 (40%), Gaps = 14/308 (4%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I R T GH + A+ + L++SA D K+ IWD + + K + S V
Sbjct: 54 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIPL-RSSWV 111
Query: 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNIL 399
++ G D ++ +T + V R + G Y+ DD Q +
Sbjct: 112 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELA-GHTGYLSCCRFLDDNQIVT 170
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV 459
+G D WD+ T + T + H G V +++ + R FV+ + D S ++W+ +
Sbjct: 171 SSG--DTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 228
Query: 460 VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519
+ + H + +I PN N A S D ++ R +L +I+ G
Sbjct: 229 CRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH--DNIICGIT 285
Query: 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579
V+FS GR +++G + C WD L H+ + C + VAT W
Sbjct: 286 -SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVTDDGMAVATGSW 343
Query: 580 DGLIKYWD 587
D +K W+
Sbjct: 344 DSFLKIWN 351
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/395 (20%), Positives = 154/395 (38%), Gaps = 107/395 (27%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHSKAVRD 345
+LVHT+ H++ V+ F K HL+L+ G D +K+WD+ N +C T GH+ +V
Sbjct: 697 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNH 755
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETG------QVIRTFSTGKIP-----YVVKL---NP 391
F D + S D ++ WD + V R F + + P +VK +
Sbjct: 756 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 815
Query: 392 DDDKQNI---------------LLA------------------------GMSDKKIVQWD 412
D DK + LLA +S + W+
Sbjct: 816 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 875
Query: 413 MNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF----------------- 455
++++ + HL V+ + F + F+T+SDD+++RVWE
Sbjct: 876 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 935
Query: 456 ----------------GIPVV------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493
G+ ++ I Y+ E + L P+ ++A D I
Sbjct: 936 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAI 992
Query: 494 LIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 552
I +L + F+ + A + + F+ DG+ ++S + W+W++ +
Sbjct: 993 KI------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YV 1045
Query: 553 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
L+ H+ ++ L+ S++ + +DG +K W+
Sbjct: 1046 FLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWN 1078
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 305 FPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364
F + G I S G D ++++ +G+ + H V +F +D + T S DK +
Sbjct: 630 FSQDGQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 688
Query: 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 424
K WD+ TG+++ T+ + +L G +D + WD+N KE
Sbjct: 689 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 748
Query: 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
H +VN F ++ + S D +LR+W+
Sbjct: 749 HTNSVNHCRFSPDDELLASCSADGTLRLWD 778
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 326 VFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY 385
VF+SG +GH KAVR I F DG +++S D I+ W+ +TG + + +
Sbjct: 1002 VFSSG------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1055
Query: 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS 445
+L D LL+ D + W++ T I +++ H G V + + +F ++S
Sbjct: 1056 DFRLLQDSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1111
Query: 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505
DK+ ++W F + + + + H + + + LA + +I I++ + L+
Sbjct: 1112 ADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1170
Query: 506 K------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 541
++ A H G+ V FSPD + ++S G K W
Sbjct: 1171 SCAPISVEEGTATH--GGWVTDVCFSPDSKTLVSAGGYLKWW 1210
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 398
H+ AV F DG + + DK ++ + ETG+ + + + DD +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SY 678
Query: 399 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--NNRRFVTSSDDKSLRVWEFG 456
+ +DKK+ WD T ++ YD+H VN F + N+ T S+D L++W+
Sbjct: 679 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 738
Query: 457 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 510
+ H +S+ P+ LA+ S D + ++ R ER +N K+ F
Sbjct: 739 QKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 794
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 21/171 (12%)
Query: 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 484
H AV F + +R + DK+L+V++ + I + H + + + +++
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 679
Query: 485 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY--------ACQVNFSPDGRFVMSGDG 536
A S D ++ I+ + G +V Y C + + +G
Sbjct: 680 ATCSADKKVKIWDSA-----------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 537 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ WD + T+ H C + P + +A+C DG ++ WD
Sbjct: 729 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 778
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 82/395 (20%), Positives = 154/395 (38%), Gaps = 107/395 (27%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHSKAVRD 345
+LVHT+ H++ V+ F K HL+L+ G D +K+WD+ N +C T GH+ +V
Sbjct: 690 KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNH 748
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETG------QVIRTFSTGKIP-----YVVKL---NP 391
F D + S D ++ WD + V R F + + P +VK +
Sbjct: 749 CRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA 808
Query: 392 DDDKQNI---------------LLA------------------------GMSDKKIVQWD 412
D DK + LLA +S + W+
Sbjct: 809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWN 868
Query: 413 MNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF----------------- 455
++++ + HL V+ + F + F+T+SDD+++RVWE
Sbjct: 869 IDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDV 928
Query: 456 ----------------GIPVV------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493
G+ ++ I Y+ E + L P+ ++A D I
Sbjct: 929 VFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQ---VSCCCLSPHLEYVAFGDEDGAI 985
Query: 494 LIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 552
I +L + F+ + A + + F+ DG+ ++S + W+W++ +
Sbjct: 986 KI------IELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGD-YV 1038
Query: 553 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
L+ H+ ++ L+ S++ + +DG +K W+
Sbjct: 1039 FLQAHQETVK--DFRLLQDSRLLSWSFDGTVKVWN 1071
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 67/150 (44%), Gaps = 1/150 (0%)
Query: 305 FPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364
F + G I S G D ++++ +G+ + H V +F +D + T S DK +
Sbjct: 623 FSQDGQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKV 681
Query: 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 424
K WD+ TG+++ T+ + +L G +D + WD+N KE
Sbjct: 682 KIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG 741
Query: 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
H +VN F ++ + S D +LR+W+
Sbjct: 742 HTNSVNHCRFSPDDELLASCSADGTLRLWD 771
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/222 (24%), Positives = 101/222 (45%), Gaps = 19/222 (8%)
Query: 326 VFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY 385
VF+SG +GH KAVR I F DG +++S D I+ W+ +TG + + +
Sbjct: 995 VFSSG------VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK 1048
Query: 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS 445
+L D LL+ D + W++ T I +++ H G V + + +F ++S
Sbjct: 1049 DFRLLQDSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTS 1104
Query: 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505
DK+ ++W F + + + + H + + + LA + +I I++ + L+
Sbjct: 1105 ADKTAKIWSFDLLSPLHEL-KGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLH 1163
Query: 506 K------KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 541
++ A H G+ V FSPD + ++S G K W
Sbjct: 1164 SCAPISVEEGTATH--GGWVTDVCFSPDSKTLVSAGGYLKWW 1203
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 398
H+ AV F DG + + DK ++ + ETG+ + + + DD +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDD--SY 671
Query: 399 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--NNRRFVTSSDDKSLRVWEFG 456
+ +DKK+ WD T ++ YD+H VN F + N+ T S+D L++W+
Sbjct: 672 IATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLN 731
Query: 457 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKKRF 510
+ H +S+ P+ LA+ S D + ++ R ER +N K+ F
Sbjct: 732 QKEC-RNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFF 787
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 32/171 (18%), Positives = 64/171 (37%), Gaps = 21/171 (12%)
Query: 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 484
H AV F + +R + DK+L+V++ + I + H + + + +++
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDI-KAHEDEVLCCAFSSDDSYI 672
Query: 485 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY--------ACQVNFSPDGRFVMSGDG 536
A S D ++ I+ + G +V Y C + + +G
Sbjct: 673 ATCSADKKVKIWDSA-----------TGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 721
Query: 537 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ WD + T+ H C + P + +A+C DG ++ WD
Sbjct: 722 DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWD 771
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 65.9 bits (159), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT 353
H ++ ++FFP G ++S+ D ++KIW V G RT +GH V DI+ + G
Sbjct: 134 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGR 191
Query: 354 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 408
L+AS D I+ W+ TG I TF+ K NP D +I L +D+++
Sbjct: 192 NVLSASLDGTIRLWECGTGTTIHTFNR-------KENPHDGVNSIALFVGTDRQL 239
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 59/115 (51%), Gaps = 9/115 (7%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT 353
H ++ ++FFP G ++S+ D ++KIW V G RT +GH V DI+ + G
Sbjct: 137 AHVSEITKLKFFPS-GEALISSSQDMQLKIWSV-KDGSNPRTLIGHRATVTDIAIIDRGR 194
Query: 354 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 408
L+AS D I+ W+ TG I TF+ K NP D +I L +D+++
Sbjct: 195 NVLSASLDGTIRLWECGTGTTIHTFNR-------KENPHDGVNSIALFVGTDRQL 242
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 78/337 (23%), Positives = 133/337 (39%), Gaps = 54/337 (16%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
+HT GH + F P+ HL + A V++W+ + K + GH V + F
Sbjct: 841 IHT--GHHSTIQYCDFSPQ-NHLAVVALSQYCVELWNTDSRSK-VADCRGHLSWVHGVMF 896
Query: 349 CNDGTKFLTASYDKNIKYWDT-------------------ETGQV-------IRTFS--- 379
DG+ FLT+S D+ I+ W+T + +V IR
Sbjct: 897 SPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLIN 956
Query: 380 --TGKIPYVVK-------LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 430
TG+I Y+ + L+P + G + I ++ I Q QH V
Sbjct: 957 GRTGQIDYLTEAQVSCCCLSP---HLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVW 1013
Query: 431 TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 490
I F + + ++SSDD ++VW + + I H ++ L N+ L + S D
Sbjct: 1014 HIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLRGHQETVKDFRLLKNSR-LLSWSFD 1070
Query: 491 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550
+ +++ NK+K F H +C ++ S D K W +D
Sbjct: 1071 GTVKVWNI---ITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL--LLP 1125
Query: 551 FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
L+ H G C+ C ++ + +AT +G I+ W+
Sbjct: 1126 LHELRGHNG-CVRCSAFSVDSTLLATGDDNGEIRIWN 1161
Score = 59.3 bits (142), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 71/151 (47%), Gaps = 3/151 (1%)
Query: 305 FPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364
F + G I S G D ++++ +G+ + H V +F D T S DK +
Sbjct: 629 FSEDGQRIASCGADKTLQVFKA-ETGEKLLEIKAHEDEVLCCAFSTDDRFIATCSVDKKV 687
Query: 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA-GMSDKKIVQWDMNTKEITQEYD 423
K W++ TG+++ T+ V + + ++LLA G SD + WD+N KE
Sbjct: 688 KIWNSMTGELVHTYDEHS-EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF 746
Query: 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
H +VN F +++ + S D +L++W+
Sbjct: 747 GHTNSVNHCRFSPDDKLLASCSADGTLKLWD 777
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 81/403 (20%), Positives = 148/403 (36%), Gaps = 125/403 (31%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
LVHT+ H++ V+ F HL+L+ G D +K+WD+ N +C T GH+ +V
Sbjct: 697 LVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDL-NQKECRNTMFGHTNSVNHC 755
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL------- 399
F D + S D +K WD + ++ + + ++ +P +D + I+
Sbjct: 756 RFSPDDKLLASCSADGTLKLWDATSANERKSINVKQF-FLNLEDPQEDMEVIVKCCSWSA 814
Query: 400 ----LAGMSDKKIVQWDMNTKEITQEYDQ------------------------------- 424
+ + KI +D++T + E
Sbjct: 815 DGARIMVAAKNKIFLFDIHTSGLLGEIHTGHHSTIQYCDFSPQNHLAVVALSQYCVELWN 874
Query: 425 ------------HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG-------------IPV 459
HL V+ + F + F+TSSDD+++R+WE + V
Sbjct: 875 TDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDV 934
Query: 460 V-----IKYISEPHMHSMPSIS------------------LHPNTNWLAAQSLDNQILIY 496
V + ++ H+ + I+ L P+ ++A + I I
Sbjct: 935 VFQENEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEIL 994
Query: 497 ST------RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG--DGEGKCWFWDWKSC 548
+ RFQ K+ HI F+ D + ++S D E + W W C
Sbjct: 995 ELVNNRIFQSRFQ---HKKTVWHI--------QFTADEKTLISSSDDAEIQVWNWQLDKC 1043
Query: 549 KVFR----TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
R T+K ++ L+ S++ + +DG +K W+
Sbjct: 1044 IFLRGHQETVK---------DFRLLKNSRLLSWSFDGTVKVWN 1077
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 76/177 (42%), Gaps = 8/177 (4%)
Query: 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 398
H+ AV F DG + + DK ++ + ETG+ + + + DD+
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDR--F 677
Query: 399 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV--TSSDDKSLRVWEFG 456
+ DKK+ W+ T E+ YD+H VN F +++ + T S D L++W+
Sbjct: 678 IATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 457 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY---STRERFQLNKKKRF 510
+ H +S+ P+ LA+ S D + ++ S ER +N K+ F
Sbjct: 738 QKEC-RNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFF 793
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 97/224 (43%), Gaps = 9/224 (4%)
Query: 321 VKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 380
++I ++ N+ + ++ H K V I F D +++S D I+ W+ + + I F
Sbjct: 991 IEILELVNN-RIFQSRFQHKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI--FLR 1047
Query: 381 GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440
G V K + LL+ D + W++ T +++ H G V + + +
Sbjct: 1048 GHQETVKDFRLL--KNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATK 1105
Query: 441 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY--ST 498
F ++S DK+ ++W F + + + + H + + ++ LA + +I I+ S
Sbjct: 1106 FSSTSADKTAKIWSFDLLLPLHEL-RGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSN 1164
Query: 499 RERFQLNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCW 541
E L G G+ + FSPDG+ ++S G K W
Sbjct: 1165 GELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGGYIKWW 1208
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 21/171 (12%)
Query: 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 484
H AV F ++ +R + DK+L+V++ + I + H + + + ++
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEI-KAHEDEVLCCAFSTDDRFI 678
Query: 485 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY---ACQVN---FSPDGRFVMSGDGEG 538
A S+D ++ I+++ G +V Y + QVN F+ ++ G
Sbjct: 679 ATCSVDKKVKIWNS-----------MTGELVHTYDEHSEQVNCCHFTNSSHHLLLATGSS 727
Query: 539 KCWF--WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
C+ WD + T+ H C + P + +A+C DG +K WD
Sbjct: 728 DCFLKLWDLNQKECRNTMFGHTNSVNHCRFSP-DDKLLASCSADGTLKLWD 777
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDT-KVKIWDVFNSGKCMRTYM--------GH 339
+H GH V F +L+ G D +++IW+V N G+ + H
Sbjct: 1126 LHELRGHNGCVRCSAF--SVDSTLLATGDDNGEIRIWNVSN-GELLHLCAPLSEEGAATH 1182
Query: 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPD 392
V D+ F DG ++A IK+W+ TG+ +TF T G + ++PD
Sbjct: 1183 GGWVTDLCFSPDGKMLISAG--GYIKWWNVVTGESSQTFYTNGTNLKKIHVSPD 1234
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 108/232 (46%), Gaps = 19/232 (8%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRD--- 345
++T GH V ++ F +++S D K+W G + H+ +V D
Sbjct: 97 LYTLIGHQGNVCSLSF---QDGVVISGSWDKTAKVW---KEGSLVYNLQAHNASVWDAKV 150
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 405
+SF + KFLTAS DK IK W + +VI+TFS V L DD I +
Sbjct: 151 VSFSEN--KFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGL 206
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465
K+V D +T ++ + Y+ H V I + N V+ +D+++R+W + + I+
Sbjct: 207 IKLV--DXHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVIT 263
Query: 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517
P + S+ S+ N + + S DN + I+S +E+ + + G + +G
Sbjct: 264 LPAI-SIWSVDCXSNGDIIVGSS-DNLVRIFS-QEKSRWASEDEIKGELRSG 312
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 110/258 (42%), Gaps = 12/258 (4%)
Query: 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453
++N ++ G D +I ++ NT E +++ H + +I ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 454 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRE---RFQLNKKKR 509
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 570 EQSKVATCGWDGLIKYWD 587
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 93/207 (44%), Gaps = 14/207 (6%)
Query: 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358
V A +F + +I+ + D ++++++ +N+G+ + + H +R I+ L+
Sbjct: 58 VRAGKFIARKNWIIVGSD-DFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 359 SYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416
S D +K W+ E + G +V V NP D + +G D+ + W +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVKVWSLG-- 171
Query: 417 EITQEYDQHLGAVNTITFVD-----NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471
+ T + G + +VD + +T+SDD ++++W++ + + E HM +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYST 498
+ HP + + S D + I+++
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 33/265 (12%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 348 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 403
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVDNNRRFVTSSDDKSLRVWEFGIPVVIK 462
D + W+ +T ++ + + L I T + ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG------ 301
Query: 463 YISEPHMHSMPSISLHPNTNWL------AAQSLDNQILIYSTRERFQ---LNKKKRFAGH 513
+ P++SL P + AA S +I E Q L+ + + G
Sbjct: 302 -------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 514 IVAGYACQVNFSPDGRFV-MSGDGE 537
+ + + SP+GRFV + GDGE
Sbjct: 355 VDV-FPQSLAHSPNGRFVTVVGDGE 378
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 110/247 (44%), Gaps = 29/247 (11%)
Query: 311 LILSAGMDTKVKIWDVFNS------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364
+++S D V IW ++ G + GH+ V D++ + +++S+DK +
Sbjct: 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTL 100
Query: 365 KYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQE 421
+ WD TG + F + Y V +PD+ + IL AG ++++I W++ K + E
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDN--RQILSAG-AEREIKLWNILGECKFSSAE 157
Query: 422 YDQHLGAVNTITFVDNNRR----------FVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471
+ H V+ + + + F + D L+VW I+Y + H +
Sbjct: 158 KENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ--IRYTFKAHESN 215
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 531
+ +S+ PN ++A D ++LI+ +++ AG + Q+ F+P ++V
Sbjct: 216 VNHLSISPNGKYIATGGKDKKLLIWDIL-NLTYPQREFDAGSTIN----QIAFNPKLQWV 270
Query: 532 MSGDGEG 538
G +G
Sbjct: 271 AVGTDQG 277
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 69/167 (41%), Gaps = 28/167 (16%)
Query: 441 FVTSSDDKSLRVWE---------FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
++ S DK++ +W+ FGIP H H + ++L + + S D
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIP---HKALTGHNHFVSDLALSQENCFAISSSWDK 98
Query: 492 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD-WKSCKV 550
+ ++ R KRF GH Y+ V FSPD R ++S E + W+ CK
Sbjct: 99 TLRLWDLRTG---TTYKRFVGHQSEVYS--VAFSPDNRQILSAGAEREIKLWNILGECKF 153
Query: 551 FRTLKCHEGVCIGC-EWHPLEQSK---------VATCGWDGLIKYWD 587
K + + C + P+ +S A+ GWDG +K W+
Sbjct: 154 SSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN 200
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 70/153 (45%), Gaps = 21/153 (13%)
Query: 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464
DK + WD+ T + + H V ++ F +NR+ +++ ++ +++W I K+
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWN--ILGECKFS 154
Query: 465 S-EPHMHS-----------MPSIS-LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 511
S E HS M S + + P + A+ D ++ +++T FQ+ + F
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN--FQI--RYTFK 210
Query: 512 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544
H ++ SP+G+++ +G + K WD
Sbjct: 211 AH--ESNVNHLSISPNGKYIATGGKDKKLLIWD 241
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 40/85 (47%), Gaps = 3/85 (3%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
++ +T+ H V+ + P G I + G D K+ IWD+ N R + S + I
Sbjct: 204 QIRYTFKAHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTYPQREFDAGS-TINQI 261
Query: 347 SFCNDGTKFLTASYDKNIKYWDTET 371
+F N +++ D+ +K ++ T
Sbjct: 262 AF-NPKLQWVAVGTDQGVKIFNLMT 285
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 110/258 (42%), Gaps = 12/258 (4%)
Query: 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453
++N ++ G D +I ++ NT E +++ H + +I ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 454 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 509
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 570 EQSKVATCGWDGLIKYWD 587
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 93/207 (44%), Gaps = 14/207 (6%)
Query: 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358
V A +F + +I+ + D ++++++ +N+G+ + + H +R I+ L+
Sbjct: 58 VRAGKFIARKNWIIVGSD-DFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 359 SYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416
S D +K W+ E + G +V V NP D + +G D+ + W +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVKVWSLG-- 171
Query: 417 EITQEYDQHLGAVNTITFVD-----NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471
+ T + G + +VD + +T+SDD ++++W++ + + E HM +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYST 498
+ HP + + S D + I+++
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 9/174 (5%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 348 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 403
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVDNNRRFVTSSDDKSLRVWEFG 456
D + W+ +T ++ + + L I T + ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 110/258 (42%), Gaps = 12/258 (4%)
Query: 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453
++N ++ G D +I ++ NT E +++ H + +I ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 454 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYS---TRERFQLNKKKR 509
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 570 EQSKVATCGWDGLIKYWD 587
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 93/207 (44%), Gaps = 14/207 (6%)
Query: 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358
V A +F + +I+ + D ++++++ +N+G+ + + H +R I+ L+
Sbjct: 58 VRAGKFIARKNWIIVGSD-DFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 359 SYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416
S D +K W+ E + G +V V NP D + +G D+ + W +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVKVWSLG-- 171
Query: 417 EITQEYDQHLGAVNTITFVD-----NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471
+ T + G + +VD + +T+SDD ++++W++ + + E HM +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYST 498
+ HP + + S D + I+++
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 9/174 (5%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 348 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 403
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVDNNRRFVTSSDDKSLRVWEFG 456
D + W+ +T ++ + + L I T + ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG 301
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 110/258 (42%), Gaps = 12/258 (4%)
Query: 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393
+T+ S V+ I F LT Y ++ W+ ET +R+ + P V+
Sbjct: 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP--VRAGKFI 64
Query: 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453
++N ++ G D +I ++ NT E +++ H + +I ++ SDD ++++W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 454 EFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRE---RFQLNKKKR 509
+ ++ E H H + ++ +P + + A+ LD + ++S + F L +
Sbjct: 125 NWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE 184
Query: 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569
+ V Y PD ++++ + WD+++ TL+ H +HP
Sbjct: 185 RGVNYVDYYPL-----PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP- 238
Query: 570 EQSKVATCGWDGLIKYWD 587
+ + DG +K W+
Sbjct: 239 TLPIIISGSEDGTLKIWN 256
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 93/207 (44%), Gaps = 14/207 (6%)
Query: 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358
V A +F + +I+ + D ++++++ +N+G+ + + H +R I+ L+
Sbjct: 58 VRAGKFIARKNWIIVGSD-DFRIRVFN-YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSG 115
Query: 359 SYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416
S D +K W+ E + G +V V NP D + +G D+ + W +
Sbjct: 116 SDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKD--PSTFASGCLDRTVKVWSLG-- 171
Query: 417 EITQEYDQHLGAVNTITFVD-----NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471
+ T + G + +VD + +T+SDD ++++W++ + + E HM +
Sbjct: 172 QSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL-EGHMSN 230
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYST 498
+ HP + + S D + I+++
Sbjct: 231 VSFAVFHPTLPIIISGSEDGTLKIWNS 257
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 33/265 (12%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
L T+ GH V + F PK S +D VK+W + S G + V +
Sbjct: 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVD 191
Query: 348 F--CNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM 403
+ D +TAS D IK WD +T + T + + V +P I+++G
Sbjct: 192 YYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAV-FHP---TLPIIISGS 247
Query: 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTI-TFVDNNRRFVTSSDDKSLRVWEFGIPVVIK 462
D + W+ +T ++ + + L I T + ++ S D V G
Sbjct: 248 EDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLG------ 301
Query: 463 YISEPHMHSMPSISLHPNTNWL------AAQSLDNQILIYSTRERFQ---LNKKKRFAGH 513
+ P++SL P + AA S +I E Q L+ + + G
Sbjct: 302 -------NDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGS 354
Query: 514 IVAGYACQVNFSPDGRFV-MSGDGE 537
+ + + SP+GRFV + GDGE
Sbjct: 355 VDV-FPQSLAHSPNGRFVTVVGDGE 378
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG---HSKAVRD 345
V T GHTK V + + P +++LSAG D + +WDV +G + T +G H +
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDV-GTGAAVLT-LGPDVHPDTIYS 181
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETGQVI----RTFSTGKIPYVVKLNPDDDKQNILLA 401
+ + DG T+ DK ++ + G V+ R + + V ++ + IL
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----EGKILTT 237
Query: 402 G---MSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455
G MS++++ WD E QE D G + D N ++ D S+R +E
Sbjct: 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR------TYMGHSKAVRDIS 347
GHT V I + P ++I S D V +W++ + G + T GH+K V ++
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 348 FCNDGTK-FLTASYDKNIKYWDTETGQVIRTF 378
+ L+A D I WD TG + T
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTGAAVLTL 170
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG---HSKAVRD 345
V T GHTK V + + P +++LSAG D + +WDV +G + T +G H +
Sbjct: 124 VITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDV-GTGAAVLT-LGPDVHPDTIYS 181
Query: 346 ISFCNDGTKFLTASYDKNIKYWDTETGQVI----RTFSTGKIPYVVKLNPDDDKQNILLA 401
+ + DG T+ DK ++ + G V+ R + + V ++ + IL
Sbjct: 182 VDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----EGKILTT 237
Query: 402 G---MSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455
G MS++++ WD E QE D G + D N ++ D S+R +E
Sbjct: 238 GFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEI 297
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 40/92 (43%), Gaps = 7/92 (7%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR------TYMGHSKAVRDIS 347
GHT V I + P ++I S D V +W++ + G + T GH+K V ++
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 348 FCNDGTK-FLTASYDKNIKYWDTETGQVIRTF 378
+ L+A D I WD TG + T
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTL 170
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 267 SWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 326
++V D K + I K+ + SGH GV A+++ +G +++S D V++WD+
Sbjct: 133 NYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDI 190
Query: 327 FNSGKCMRTYMGHSKAVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVI--------- 375
G C + GH+ VR DI + +T S D + W +
Sbjct: 191 -KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 376 -RTFST-GKIPYVV--------KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 425
F T + PY V + NI+++G D ++ WD+ + H
Sbjct: 250 PLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGH 309
Query: 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455
+ + + +R +++S D ++R+W+
Sbjct: 310 TDRIYSTIYDHERKRCISASXDTTIRIWDL 339
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 67/141 (47%), Gaps = 10/141 (7%)
Query: 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 359
+++R +G++++S D + +WDV KC+ GH+ + + ++ + ++AS
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQX-KCLYILSGHTDRIYSTIYDHERKRCISAS 329
Query: 360 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 419
D I+ WD E G++ T G V L D L++ +D I WD N + +
Sbjct: 330 XDTTIRIWDLENGELXYTLQ-GHTALVGLLRLSD---KFLVSAAADGSIRGWDAN--DYS 383
Query: 420 QEYDQH---LGAVNTITFVDN 437
+++ H L A+ T DN
Sbjct: 384 RKFSYHHTNLSAITTFYVSDN 404
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY------------- 336
H GH + + A+ + P+Y +++ +A D++VK+WDV + C+ T
Sbjct: 180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVES 239
Query: 337 --MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 373
H+ V + F +DG LT D ++ W++ G+
Sbjct: 240 ANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 78/179 (43%), Gaps = 24/179 (13%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS------- 347
H G++ + P G +LS G D + ++D+ NS + ++Y KAV I
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR--QSYYT-CKAVCSIGRDHPDVH 98
Query: 348 ---------FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNI 398
+ +D F ++S+DK +K WDT T Q F+ + Y ++P K +
Sbjct: 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCL 158
Query: 399 LLAGMSDKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
+ G K+ D+ + I Q + Q + AV+ D T+S D +++W+
Sbjct: 159 VAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYD--YILATASADSRVKLWD 215
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 8/160 (5%)
Query: 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL 356
K + +I + P G + S +D + I+D+ +GK + T GH+ +R ++F D +
Sbjct: 165 KFILSIAYSPD-GKYLASGAIDGIINIFDI-ATGKLLHTLEGHAMPIRSLTFSPDSQLLV 222
Query: 357 TASYDKNIKYWDTETGQVIRTFSTGKIPYV--VKLNPDDDKQNILLAGMSDKKIVQWDMN 414
TAS D IK +D + + T S G +V V PDD ++ SDK + WD+
Sbjct: 223 TASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTH---FVSSSSDKSVKVWDVG 278
Query: 415 TKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
T+ + H V + + N + V+ DD+ + +++
Sbjct: 279 TRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/278 (19%), Positives = 113/278 (40%), Gaps = 12/278 (4%)
Query: 312 ILSAGMDTKVKIWDVFNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370
+++ +D VK+W + ++ + GH V + + ++S D +I+ WD E
Sbjct: 51 VVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE 110
Query: 371 TGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 429
G+ I++ G + + + +PD L G K+ + + + + D +
Sbjct: 111 NGKQIKSIDAGPVDAWTLAFSPD---SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167
Query: 430 NTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489
+I + + + + + D + +++ ++ + E H + S++ P++ L S
Sbjct: 168 LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL-EGHAMPIRSLTFSPDSQLLVTASD 226
Query: 490 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 549
D I IY + N +GH A + V F PD +S + WD +
Sbjct: 227 DGYIKIYDVQHA---NLAGTLSGH--ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRT 281
Query: 550 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
T H+ G +++ SK+ + G D I +D
Sbjct: 282 CVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
+L+HT GH + ++ F P L+++A D +KI+DV T GH+ V ++
Sbjct: 197 KLLHTLEGHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDV-QHANLAGTLSGHASWVLNV 254
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 378
+FC D T F+++S DK++K WD T + TF
Sbjct: 255 AFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/202 (20%), Positives = 89/202 (44%), Gaps = 14/202 (6%)
Query: 390 NPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK 448
N ++ + ++ + D K+ +W ++ + H V ++ +SS D
Sbjct: 43 NKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDA 102
Query: 449 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY---STRERFQLN 505
+R+W+ IK I + + +++ P++ +LA + ++ I+ S ++ + L+
Sbjct: 103 HIRLWDLENGKQIKSIDAGPVDAW-TLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD 161
Query: 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 565
+ +F + +SPDG+++ SG +G +D + K+ TL+ H
Sbjct: 162 TRGKFI--------LSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLT 213
Query: 566 WHPLEQSKVATCGWDGLIKYWD 587
+ P Q V T DG IK +D
Sbjct: 214 FSPDSQLLV-TASDDGYIKIYD 234
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 13/153 (8%)
Query: 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDIS 347
V GH ++++R +G++++S D + +WDV KC+ GH+ +
Sbjct: 262 FVGVLRGH---MASVRTVSGHGNIVVSGSYDNTLIVWDVAQM-KCLYILSGHTDRIYSTI 317
Query: 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 407
+ ++ + ++AS D I+ WD E G+++ T G V L D L++ +D
Sbjct: 318 YDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHTALVGLLRLSD---KFLVSAAADGS 373
Query: 408 IVQWDMNTKEITQEYDQH---LGAVNTITFVDN 437
I WD N + ++++ H L A+ T DN
Sbjct: 374 IRGWDAN--DYSRKFSYHHTNLSAITTFYVSDN 404
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 87/210 (41%), Gaps = 24/210 (11%)
Query: 267 SWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 326
++V D K + I K+ + SGH GV A+++ +G +++S D V++WD+
Sbjct: 133 NYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDI 190
Query: 327 FNSGKCMRTYMGHSKAVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVI--------- 375
G C + GH+ VR DI + +T S D + W +
Sbjct: 191 -KKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY 249
Query: 376 -RTFST-GKIPYVV--------KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 425
F T + PY V + NI+++G D ++ WD+ + H
Sbjct: 250 PLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGH 309
Query: 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455
+ + + +R +++S D ++R+W+
Sbjct: 310 TDRIYSTIYDHERKRCISASMDTTIRIWDL 339
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 24/225 (10%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT------YMGHSKAVRDIS 347
GH K + + P +LSA D + +WD+ + K R + GH+ V D++
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 348 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 404
+ + F + + D+ + WDT + T V L+ + + IL G +
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 405 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI----- 457
DK + WD+ N K ++ H + + + +N + SS D+ L VW+
Sbjct: 299 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 358
Query: 458 --------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 494
P + +I H + S +PN W+ ++ I+
Sbjct: 359 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 403
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 438 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 194 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 253
Query: 492 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 546
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 254 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 308
Query: 547 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 350
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF--NSGKCMRTYMGHSKAVRDISFC 349
++GHT V + + + L S D K+ IWD N+ K T H+ V +SF
Sbjct: 227 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF- 285
Query: 350 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 405
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 286 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 343
Query: 406 KKIVQWDMN 414
+++ WD++
Sbjct: 344 RRLHVWDLS 352
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
HT HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 271 HTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 329
Query: 349 CNDGTKFLTAS-YDKNIKYWD 368
L +S D+ + WD
Sbjct: 330 SPHNETILASSGTDRRLHVWD 350
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT---------- 335
K +H++ H + +++ P ++ S+G D ++ +WD+ G+ T
Sbjct: 311 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 370
Query: 336 ---YMGHSKAVRDISFC-NDGTKFLTASYDKNIKYW 367
+ GH+ + D S+ N+ + S D ++ W
Sbjct: 371 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 24/225 (10%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT------YMGHSKAVRDIS 347
GH K + + P +LSA D + +WD+ + K R + GH+ V D++
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 348 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 404
+ + F + + D+ + WDT + T V L+ + + IL G +
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 405 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI----- 457
DK + WD+ N K ++ H + + + +N + SS D+ L VW+
Sbjct: 301 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 360
Query: 458 --------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 494
P + +I H + S +PN W+ ++ I+
Sbjct: 361 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 405
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 438 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 196 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 255
Query: 492 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 546
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 256 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 310
Query: 547 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 352
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF--NSGKCMRTYMGHSKAVRDISFC 349
++GHT V + + + L S D K+ IWD N+ K T H+ V +SF
Sbjct: 229 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF- 287
Query: 350 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 405
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 288 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 345
Query: 406 KKIVQWDMN 414
+++ WD++
Sbjct: 346 RRLHVWDLS 354
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
HT HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 273 HTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 331
Query: 349 CNDGTKFLTAS-YDKNIKYWD 368
L +S D+ + WD
Sbjct: 332 SPHNETILASSGTDRRLHVWD 352
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT---------- 335
K +H++ H + +++ P ++ S+G D ++ +WD+ G+ T
Sbjct: 313 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 372
Query: 336 ---YMGHSKAVRDISFC-NDGTKFLTASYDKNIKYW 367
+ GH+ + D S+ N+ + S D ++ W
Sbjct: 373 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 24/225 (10%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT------YMGHSKAVRDIS 347
GH K + + P +LSA D + +WD+ + K R + GH+ V D++
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 348 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 404
+ + F + + D+ + WDT + T V L+ + + IL G +
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 405 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI----- 457
DK + WD+ N K ++ H + + + +N + SS D+ L VW+
Sbjct: 303 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQ 362
Query: 458 --------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 494
P + +I H + S +PN W+ ++ I+
Sbjct: 363 STEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM 407
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/162 (21%), Positives = 69/162 (42%), Gaps = 17/162 (10%)
Query: 438 NRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491
N +++SDD ++ +W+ + K I H + ++ H L D+
Sbjct: 198 NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD 257
Query: 492 Q-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWK 546
Q ++I+ TR N H V + +VN F+P F++ +G + WD +
Sbjct: 258 QKLMIWDTR-----NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR 312
Query: 547 SCKV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+ K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWD 354
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF--NSGKCMRTYMGHSKAVRDISFC 349
++GHT V + + + L S D K+ IWD N+ K T H+ V +SF
Sbjct: 231 FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSF- 289
Query: 350 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 405
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 290 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 347
Query: 406 KKIVQWDMN 414
+++ WD++
Sbjct: 348 RRLHVWDLS 356
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
HT HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 275 HTVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 333
Query: 349 CNDGTKFLTAS-YDKNIKYWD 368
L +S D+ + WD
Sbjct: 334 SPHNETILASSGTDRRLHVWD 354
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT---------- 335
K +H++ H + +++ P ++ S+G D ++ +WD+ G+ T
Sbjct: 315 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPEL 374
Query: 336 ---YMGHSKAVRDISFC-NDGTKFLTASYDKNIKYW 367
+ GH+ + D S+ N+ + S D ++ W
Sbjct: 375 LFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 8/172 (4%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW-DVFNSGKC--MRTYMGHSKAVRD 345
V T SGH++ V +R+ P HL S G D V +W G ++T+ H AV+
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 346 ISFCNDGTKFLT---ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 402
+++C + L + D++I+ W+ +G + + +P K+ I G
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKELISGHG 351
Query: 403 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
+ ++V W T E H V ++T + +++ D++LR+W
Sbjct: 352 FAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 312 ILSAGMDT-KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370
ILS+G + + DV + + T GHS+ V + + DG + D + W +
Sbjct: 212 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 271
Query: 371 TGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLA---GMSDKKIVQWDMNTKEITQEYD 423
G+ ++TF+ + VK Q+ +LA G SD+ I W++ + D
Sbjct: 272 PGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 329
Query: 424 QHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN 480
H V +I + + + ++ L +W++ P + K + H + S+++ P+
Sbjct: 330 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPD 386
Query: 481 TNWLAAQSLDNQILIYSTRERFQLNKKKR 509
+A+ + D + ++ F+L+ +R
Sbjct: 387 GATVASAAADETLRLWRC---FELDPARR 412
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 15/187 (8%)
Query: 274 DAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW-DVFNSGKC 332
D + A H V T SGH++ V +R+ P HL S G D V +W G
Sbjct: 215 DVRVAEHH-------VATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGW 266
Query: 333 --MRTYMGHSKAVRDISFCNDGTKFLT---ASYDKNIKYWDTETGQVIRTFSTGKIPYVV 387
++T+ H AV+ +++C + L + D++I+ W+ +G + +
Sbjct: 267 VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSI 326
Query: 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447
+P K+ I G + ++V W T E H V ++T + +++ D
Sbjct: 327 LWSP-HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAAD 385
Query: 448 KSLRVWE 454
++LR+W
Sbjct: 386 ETLRLWR 392
Score = 32.3 bits (72), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 44/209 (21%), Positives = 91/209 (43%), Gaps = 19/209 (9%)
Query: 312 ILSAGMDT-KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370
ILS+G + + DV + + T GHS+ V + + DG + D + W +
Sbjct: 201 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 260
Query: 371 TGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLA---GMSDKKIVQWDMNTKEITQEYD 423
G+ ++TF+ + VK Q+ +LA G SD+ I W++ + D
Sbjct: 261 PGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD 318
Query: 424 QHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN 480
H V +I + + + ++ L +W++ P + K + H + S+++ P+
Sbjct: 319 AH-SQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPD 375
Query: 481 TNWLAAQSLDNQILIYSTRERFQLNKKKR 509
+A+ + D + ++ F+L+ +R
Sbjct: 376 GATVASAAADETLRLWRC---FELDPARR 401
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 8/177 (4%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW-DVFNSGKC--MRTYMGHS 340
+ + V T SGH++ V +R+ P HL S G D V +W G ++T+ H
Sbjct: 138 VAEHHVATLSGHSQEVCGLRWAPDGRHLA-SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ 196
Query: 341 KAVRDISFCNDGTKFLT---ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 397
AV+ +++C + L + D++I+ W+ +G + + +P K+
Sbjct: 197 GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSP-HYKEL 255
Query: 398 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454
I G + ++V W T E H V ++T + +++ D++LR+W
Sbjct: 256 ISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 40/199 (20%), Positives = 82/199 (41%), Gaps = 14/199 (7%)
Query: 312 ILSAGMDT-KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370
ILS+G + + DV + + T GHS+ V + + DG + D + W +
Sbjct: 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSA 180
Query: 371 TGQ----VIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 424
G+ ++TF+ G + V P G SD+ I W++ + D
Sbjct: 181 PGEGGWVPLQTFTQHQGAVK-AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA 239
Query: 425 HLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNT 481
H V +I + + + ++ L +W++ P + K + H + S+++ P+
Sbjct: 240 H-SQVCSILWSPHYKELISGHGFAQNQLVIWKY--PTMAKVAELKGHTSRVLSLTMSPDG 296
Query: 482 NWLAAQSLDNQILIYSTRE 500
+A+ + D + ++ E
Sbjct: 297 ATVASAAADETLRLWRCFE 315
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 94/219 (42%), Gaps = 14/219 (6%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD--VFNSGKCMRTYMGHSKAVRDISFCN 350
SGH++ ++A ++ G D V + F RT+ VRD+ F
Sbjct: 157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216
Query: 351 DGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD--DKQNILLAGMSDKK 407
D +F +T D+ I +D ++G+ ++ + P + D Q G +D
Sbjct: 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADAT 275
Query: 408 IVQWDMNTKEITQEY---DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464
I WD+ T + Q++ Q LG N R ++ S D +L +E G V+K I
Sbjct: 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTI 335
Query: 465 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503
S H + +++++P L + S D +I+ +S+ Q
Sbjct: 336 S-GHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 369
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 65/311 (20%), Positives = 122/311 (39%), Gaps = 39/311 (12%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
++ T SGH KG++A+ P ++S D ++ W S M + HS + +
Sbjct: 330 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEW----SSSSM--HQDHSNLIVSL 378
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 406
D +K A +I + DT I G P V N +D +L D
Sbjct: 379 ----DNSK---AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN--NDGFTAVLTNDDDL 429
Query: 407 KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE 466
I+Q T +I + L + + + N V + +++V++ + + + +
Sbjct: 430 LILQ--SFTGDIIKSV--RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDLK 484
Query: 467 PHMHSMPS-ISLHPNTNWLAAQSLDNQILIYSTRER--------FQLNKKKRFAGHIVAG 517
+ + PS IS+ P+ ++AA + +IL+Y + R F+ +K +
Sbjct: 485 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544
Query: 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576
A + D V +G + + + K K+ + L H+ W S + +
Sbjct: 545 GANEEEIEED--LVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE--TPSTLVS 600
Query: 577 CGWDGLIKYWD 587
G D IK W+
Sbjct: 601 SGADACIKRWN 611
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/234 (22%), Positives = 95/234 (40%), Gaps = 25/234 (10%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF---NSGKCM---RTYMGHSKAVRDIS 347
GH K + + P +LSA D + +WD+ GK + + GH+ V D+S
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 348 F-CNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMS 404
+ + F + + D+ + WDT + + + V L+ + + IL G +
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSA 294
Query: 405 DKKIVQWDM-NTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI----- 457
DK + WD+ N K ++ H + + + +N + SS D+ L VW+
Sbjct: 295 DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQ 354
Query: 458 --------PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERF 502
P + +I H + S +PN W + + S DN + ++ E
Sbjct: 355 SPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENI 408
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 17/160 (10%)
Query: 440 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ- 492
+++SDD ++ +W+ G V K I H + +S H L D+Q
Sbjct: 192 HLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFGSVADDQK 251
Query: 493 ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 548
++I+ TR N K H V + +VN F+P F++ +G + WD ++
Sbjct: 252 LMIWDTRSN---NTSK--PSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 306
Query: 549 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
K+ + + H+ +W P ++ +A+ G D + WD
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD 346
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF--NSGKCMRTYMGHSKAVRDISFC 349
++GHT V + + + L S D K+ IWD N+ K + H+ V +SF
Sbjct: 223 FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSF- 281
Query: 350 NDGTKFL--TASYDKNIKYWDTETGQV-IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 405
N ++F+ T S DK + WD ++ + +F + K + V+ +P + + IL + +D
Sbjct: 282 NPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHN--ETILASSGTD 339
Query: 406 KKIVQWDMN 414
+++ WD++
Sbjct: 340 RRLNVWDLS 348
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
H+ HT V+ + F P Y IL+ G D V +WD+ N + ++ H + + +
Sbjct: 267 HSVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 325
Query: 349 CNDGTKFLTAS-YDKNIKYWD 368
L +S D+ + WD
Sbjct: 326 SPHNETILASSGTDRRLNVWD 346
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/96 (18%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG-------------KC 332
K +H++ H + +++ P ++ S+G D ++ +WD+ G +
Sbjct: 307 KLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPEL 366
Query: 333 MRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYW 367
+ + GH+ + D S+ N+ + S D ++ W
Sbjct: 367 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 77/176 (43%), Gaps = 19/176 (10%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVFNSGKCMRTYMGHSKAVRDISFC 349
GH + V + + P G+ + SA D IW D F +C+ T GH V+ +++
Sbjct: 59 GHQRTVRKVAWSP-CGNYLASASFDATTCIWKKNQDDF---ECVTTLEGHENEVKSVAWA 114
Query: 350 NDGTKFLTASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMS 404
G T S DK++ W+ + S T + +VV +P Q +L +
Sbjct: 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV-WHP---SQELLASASY 170
Query: 405 DK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP 458
D K+ + + + + H V ++ F + +R + SDD+++R+W +P
Sbjct: 171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLP 226
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 16/90 (17%)
Query: 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--------------KCMRTY 336
T GH V ++ F P G + S D V+IW + G KC+ T
Sbjct: 189 TLEGHESTVWSLAFDPS-GQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTL 247
Query: 337 MG-HSKAVRDISFCNDGTKFLTASYDKNIK 365
G HS+ + DI++C TA D I+
Sbjct: 248 SGFHSRTIYDIAWCQLTGALATACGDDAIR 277
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 5/106 (4%)
Query: 441 FVTSSDDKSLRVW--EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498
+ D+ +R+W E + +SE H ++ ++ P N+LA+ S D I+
Sbjct: 31 LASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWK- 89
Query: 499 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544
+ + GH V ++P G + + + W W+
Sbjct: 90 KNQDDFECVTTLEGH--ENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 40/226 (17%)
Query: 309 GHLILSAGMDTKVKIWDVFNSG-------KCMRTYMGHSKAVRDISF-CNDGTKFLTASY 360
GHL LSA D V +WD+ N+G + GHS V D+++ + F + +
Sbjct: 193 GHL-LSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 361 DKNIKYWDTETGQVIRTFSTGKIPYVVK--------LNPDDDKQNILLAGMSDKKIVQWD 412
D+ + WDT R+ +T K ++V L+ + + IL G +DK + WD
Sbjct: 251 DQKLMIWDT------RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 413 M-NTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI------------- 457
+ N K ++ H + + + +N + SS D+ L VW+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 458 PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERF 502
P + +I H + S +PN W + + S DN + I+ E
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAENI 410
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 17/160 (10%)
Query: 440 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ- 492
+++SDD ++ +W+ G V K I H + ++ H L D+Q
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 493 ILIYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 548
++I+ TR + H+V + +VN F+P F++ +G + WD ++
Sbjct: 254 LMIWDTR-----SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 549 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
K+ T + H+ W P ++ +A+ G D + WD
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 35.8 bits (81), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
H HT V+ + F P Y IL+ G D V +WD+ N + T+ H + + +
Sbjct: 269 HLVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 349 CNDGTKFLTAS-YDKNIKYWD 368
L +S D+ + WD
Sbjct: 328 SPHNETILASSGTDRRLNVWD 348
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 41/96 (42%), Gaps = 14/96 (14%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG-------------KC 332
K +HT+ H + + + P ++ S+G D ++ +WD+ G +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 333 MRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYW 367
+ + GH+ + D S+ N+ + S D ++ W
Sbjct: 369 LFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KSCKVF---RTLK 555
+ N R GH GY N + G + + D C WD K K+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFT 226
Query: 556 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
H V WH L +S + D + WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLMIWD 258
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/195 (22%), Positives = 71/195 (36%), Gaps = 25/195 (12%)
Query: 311 LILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370
+ S D + +WD+ N +R + GH+ I NDGTK T D ++ WD
Sbjct: 155 VCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLR 213
Query: 371 TGQVI-------RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 423
G+ + + FS G P L GM + +N + +Y
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCP----------TGEWLAVGMESSNVEVLHVNKPD---KYQ 260
Query: 424 QHL--GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 481
HL V ++ F + FV++ D L W P S+ S + +
Sbjct: 261 LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR--TPYGASIFQSKESSSVLSCDISVDD 318
Query: 482 NWLAAQSLDNQILIY 496
++ S D + +Y
Sbjct: 319 KYIVTGSGDKKATVY 333
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/226 (24%), Positives = 94/226 (41%), Gaps = 40/226 (17%)
Query: 309 GHLILSAGMDTKVKIWDVFNSG-------KCMRTYMGHSKAVRDISF-CNDGTKFLTASY 360
GHL LSA D V +WD+ N+G + GHS V D+++ + F + +
Sbjct: 193 GHL-LSASDDHTVCLWDI-NAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVAD 250
Query: 361 DKNIKYWDTETGQVIRTFSTGKIPYVVK--------LNPDDDKQNILLAGMSDKKIVQWD 412
D+ + WDT R+ +T K ++V L+ + + IL G +DK + WD
Sbjct: 251 DQKLXIWDT------RSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWD 304
Query: 413 M-NTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI------------- 457
+ N K ++ H + + + +N + SS D+ L VW+
Sbjct: 305 LRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDG 364
Query: 458 PVVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTRERF 502
P + +I H + S +PN W + + S DN I+ E
Sbjct: 365 PPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAENI 410
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 68/160 (42%), Gaps = 17/160 (10%)
Query: 440 RFVTSSDDKSLRVWEF------GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493
+++SDD ++ +W+ G V K I H + ++ H L D+Q
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVADDQK 253
Query: 494 L-IYSTRERFQLNKKKRFAGHIVAGYACQVN---FSPDGRFVM-SGDGEGKCWFWDWKSC 548
L I+ TR + H+V + +VN F+P F++ +G + WD ++
Sbjct: 254 LXIWDTR-----SNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNL 308
Query: 549 KV-FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
K+ T + H+ W P ++ +A+ G D + WD
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWD 348
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 290 HTWSGHTKGVSAIRFFPKYGHLILSAG-MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
H HT V+ + F P Y IL+ G D V +WD+ N + T+ H + + +
Sbjct: 269 HLVDAHTAEVNCLSFNP-YSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 349 CNDGTKFLTAS-YDKNIKYWD 368
L +S D+ + WD
Sbjct: 328 SPHNETILASSGTDRRLNVWD 348
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 13/76 (17%)
Query: 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG-------------KC 332
K +HT+ H + + + P ++ S+G D ++ +WD+ G +
Sbjct: 309 KLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPEL 368
Query: 333 MRTYMGHSKAVRDISF 348
+ + GH+ + D S+
Sbjct: 369 LFIHGGHTAKISDFSW 384
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KSCKVF---RTLK 555
+ N R GH GY N + G + + D C WD K K+
Sbjct: 168 ECNPDLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVC-LWDINAGPKEGKIVDAKAIFT 226
Query: 556 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
H V WH L +S + D + WD
Sbjct: 227 GHSAVVEDVAWHLLHESLFGSVADDQKLXIWD 258
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 88/209 (42%), Gaps = 14/209 (6%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD--VFNSGKCMRTYMGHSKAVRDISFCN 350
SGH++ ++A + G D V + F RT+ VRD+ F
Sbjct: 157 SGHSQRINACHLKQSRPXRSXTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP 216
Query: 351 DGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD--DKQNILLAGMSDKK 407
D +F +T D+ I +D ++G+ ++ + P + D Q G +D
Sbjct: 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVG-ADAT 275
Query: 408 IVQWDMNTKEITQEY---DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464
I WD+ T + Q++ Q LG N R ++ S D +L +E G V+K I
Sbjct: 276 IRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTI 335
Query: 465 SEPHMHSMPSISLHPNTNWLAAQSLDNQI 493
S H + +++++P L + S D +I
Sbjct: 336 S-GHNKGITALTVNP----LISGSYDGRI 359
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 63/311 (20%), Positives = 120/311 (38%), Gaps = 39/311 (12%)
Query: 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDI 346
++ T SGH KG++A+ P ++S D ++ W + HS + +
Sbjct: 330 EVLKTISGHNKGITALTVNP-----LISGSYDGRIXEW------SSSSXHQDHSNLIVSL 378
Query: 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 406
D +K A +I + DT I G P V N +D +L D
Sbjct: 379 ----DNSK---AQEYSSISWDDTLKVNGITKHEFGSQPKVASAN--NDGFTAVLTNDDDL 429
Query: 407 KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE 466
I+Q T +I + L + + + N V + +++V++ + + + +
Sbjct: 430 LILQ--SFTGDIIKSV--RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLS-DLEVSFDLK 484
Query: 467 PHMHSMPS-ISLHPNTNWLAAQSLDNQILIYSTRER--------FQLNKKKRFAGHIVAG 517
+ + PS IS+ P+ ++AA + +IL+Y + R F+ +K +
Sbjct: 485 TPLRAKPSYISISPSETYIAAGDVXGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 544
Query: 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576
A + D V +G + + + K K+ + L H+ W S + +
Sbjct: 545 GANEEEIEED--LVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWE--TPSTLVS 600
Query: 577 CGWDGLIKYWD 587
G D IK W+
Sbjct: 601 SGADACIKRWN 611
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Query: 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC------MRTYMG 338
P + T+ HTK V ++R+ P G L S G D + +++ + K +
Sbjct: 179 PFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA 237
Query: 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 381
HS +V +++ DGTK +AS DK IK W+ T +V +T G
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVG 280
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/300 (19%), Positives = 111/300 (37%), Gaps = 47/300 (15%)
Query: 330 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKL 389
G + GH+KA+ +S DG +A + +I WD TG R F + +
Sbjct: 314 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 373
Query: 390 NPD----------DDKQNILLAGMS---DKKIVQWDMNTK----EITQEYDQHLGAV--- 429
DD ++ AG S K V ++++ ++ + D + A
Sbjct: 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433
Query: 430 -----------------NTITFVDNNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHS 471
++ + N+++FV D + V++ V + + H
Sbjct: 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 493
Query: 472 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 531
+ S++ N +L A +++ YS F+L + H A AC V++SPD +
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFH-TAKVAC-VSWSPDNVRL 551
Query: 532 MSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
+G + W+ + + V W L ++ + + G D IK+W+
Sbjct: 552 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN-SVIW--LNETTIVSAGQDSNIKFWN 608
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/205 (21%), Positives = 89/205 (43%), Gaps = 22/205 (10%)
Query: 363 NIKYWDT-ETGQVIRTFSTGKIPY----VVKLNPDDDKQNILLAGMSDKK---IVQWDMN 414
N++ WDT +T +++T IP V ++ D + + I G ++ + +D
Sbjct: 82 NVRIWDTTQTTHILKT----TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG 137
Query: 415 TKEITQEYDQHLGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 473
T A+N++ F + R ++ SDD ++ ++E G P K H +
Sbjct: 138 TSN--GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVH 194
Query: 474 SISLHPNTNWLAAQSLDNQILIYS----TRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529
S+ +P+ + A+ D I++Y+ T+ + + H +G + +SPDG
Sbjct: 195 SVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAH--SGSVFGLTWSPDGT 252
Query: 530 FVMSGDGEGKCWFWDWKSCKVFRTL 554
+ S + W+ + KV +T+
Sbjct: 253 KIASASADKTIKIWNVATLKVEKTI 277
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 67/153 (43%), Gaps = 15/153 (9%)
Query: 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS--YDKNIKYW 367
+ G D+KV ++ + + + H + ++F N+G FL A+ K I Y
Sbjct: 461 QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG-AFLVATDQSRKVIPYS 519
Query: 368 DTETGQVIR----TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQ 420
++ TF T K+ V +PD+ + L G D ++ W+MN I
Sbjct: 520 VANNFELAHTNSWTFHTAKVA-CVSWSPDNVR---LATGSLDNSVIVWNMNKPSDHPIII 575
Query: 421 EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453
+ + +VN++ ++ N V++ D +++ W
Sbjct: 576 KGAHAMSSVNSVIWL-NETTIVSAGQDSNIKFW 607
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 61/308 (19%), Positives = 113/308 (36%), Gaps = 76/308 (24%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG 352
+G + ++++ F P I+S D V I++ K T+ H+K V + + DG
Sbjct: 144 TGQARAMNSVDFKPSRPFRIISGSDDNTVAIFE-GPPFKFKSTFGEHTKFVHSVRYNPDG 202
Query: 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 412
+ F + D I ++ G F DD +N+
Sbjct: 203 SLFASTGGDGTIVLYNGVDGTKTGVFE------------DDSLKNV-------------- 236
Query: 413 MNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW-------EFGIPVVIKYIS 465
H G+V +T+ + + ++S DK++++W E IPV + I
Sbjct: 237 -----------AHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTR-IE 284
Query: 466 EPHM------HSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAG 517
+ + ++ SIS + N++ + S+D + R+ NK
Sbjct: 285 DQQLGIIWTKQALVSISANGFINFVNPELGSID--------QVRYGHNKA---------- 326
Query: 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVAT 576
++ S DG+ + S D EG WD + R H + G + + + T
Sbjct: 327 -ITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK--TTSKGDLFT 383
Query: 577 CGWDGLIK 584
WD +K
Sbjct: 384 VSWDDHLK 391
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 47/95 (49%), Gaps = 3/95 (3%)
Query: 285 PKRLVHTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVFNSGKCM-RTYMGHSK 341
P + + S + + F P G+ +++ V+ W+V +SG+ + + H+
Sbjct: 28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTG 87
Query: 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376
V D+ + +DG+K TAS DK K WD + Q I+
Sbjct: 88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ 122
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 10/121 (8%)
Query: 386 VVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQEYDQHLGAVNTITFVDNNRRFVT 443
+ +P N L+AG + W++ + + I + H G V + + D+ + T
Sbjct: 44 CLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103
Query: 444 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH----PNTNWLAAQSLDNQILIYSTR 499
+S DK+ ++W+ I+ H P ++H PN + + S D + + TR
Sbjct: 104 ASCDKTAKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTR 159
Query: 500 E 500
Sbjct: 160 S 160
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKY 366
G + +A D K+WD+ +S + ++ H V+ I + + + +T S+DK +K+
Sbjct: 98 GSKVFTASCDKTAKMWDL-SSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKF 155
Query: 367 WDTET 371
WDT +
Sbjct: 156 WDTRS 160
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 471 SMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 527
S+ +S P T N+L A S N + + ++ Q K A + G V +S D
Sbjct: 41 SIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK---AQQMHTGPVLDVCWSDD 97
Query: 528 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW-HPLEQSKVATCGWDGLIKYW 586
G V + + WD S + + + H+ W S V T WD +K+W
Sbjct: 98 GSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFW 156
Query: 587 D 587
D
Sbjct: 157 D 157
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 67/160 (41%), Gaps = 15/160 (9%)
Query: 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368
G I++ D K+ +DV N+ + + + H K++ D+ F D T F+T+S D N D
Sbjct: 187 GKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVD 246
Query: 369 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ-------------WDMNT 415
T QV++ + T + P K+ I+L G + K V +
Sbjct: 247 VSTLQVLKKYETDCPLNTAVITP--LKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIF 304
Query: 416 KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455
+E H G +NT+ + + +D +R+ F
Sbjct: 305 EEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHF 344
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG 352
+GH + ++ +++ K G L+ S D+ +W N G+ + T GH+ + I
Sbjct: 29 TGHERPLTQVKY-NKEGDLLFSCSKDSSASVWYSLN-GERLGTLDGHTGTIWSIDVDCFT 86
Query: 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 412
+T S D +IK WD GQ + T+ K P VK N LA + +
Sbjct: 87 KYCVTGSADYSIKLWDVSNGQCVATW---KSPVPVKRVEFSPCGNYFLAILDNVMKNPGS 143
Query: 413 MNTKEITQEYDQH 425
+N EI ++ H
Sbjct: 144 INIYEIERDSATH 156
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 6/183 (3%)
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DNNRRFVTSSDDKSLRVWEFGIP 458
++G D + WD++ K + + Y+ H VN + + F++ +D + +W+ P
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKP 214
Query: 459 VVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517
I ++P S++ HP + A + + + + + G
Sbjct: 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITG 274
Query: 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 577
A + SP F+ S + D +VFR L H G W PL+ SK T
Sbjct: 275 LAYSYHSSP---FLASISEDCTVAVLDADFSEVFRDLS-HRDFVTGVAWSPLDHSKFTTV 330
Query: 578 GWD 580
GWD
Sbjct: 331 GWD 333
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG---HSKAVRDISFCNDGTK 354
GV+ + + + G IL A V++W++ + H V+ +S +DGT+
Sbjct: 96 GVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQ 153
Query: 355 FLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWD 412
++ D ++K WD V+++++ V P K I L+ D +I+ WD
Sbjct: 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP--GKDTIFLSCGEDGRILLWD 210
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 79/181 (43%), Gaps = 25/181 (13%)
Query: 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK------CMRTYMGHSKAVRDI 346
+ H K + ++ + P + L+ + D+ V IW S + GH V+ +
Sbjct: 55 TAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGV 113
Query: 347 SFCNDGTKFLTASYDKNIKYWDT-ETGQVIRTFSTGKIPYVVKLNPDDDKQNI------L 399
++ NDG T S DK++ W+T E+G+ S V++ + D K I L
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECIS------VLQEHSQDVKHVIWHPSEAL 167
Query: 400 LAGMS-DKKIVQW-DMNTK-EITQEYDQHLGAVNTITF--VDNNRRFVTSSDDKSLRVWE 454
LA S D + W D + E + H G V + F + R + SDD ++RVW+
Sbjct: 168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWK 227
Query: 455 F 455
+
Sbjct: 228 Y 228
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 57/128 (44%), Gaps = 11/128 (8%)
Query: 467 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER----FQLNKKKRFAGHIVAGYACQV 522
H ++ S++ P+T+ LAA S D+ + I++ E F+++ GH V
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGH--ENEVKGV 113
Query: 523 NFSPDGRFVMSGDGEGKCWFWDW----KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578
+S DG ++ + + W W+ + + L+ H WHP E + +A+
Sbjct: 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSS 172
Query: 579 WDGLIKYW 586
+D ++ W
Sbjct: 173 YDDTVRIW 180
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368
G+ I++ + ++++W+ +G + H + + + DGT ++ + W+
Sbjct: 120 GNSIVTGVENGELRLWN--KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWN 177
Query: 369 TETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIV---------QWDMNTK 416
+G V++ F TG + + D + + + D K V + + K
Sbjct: 178 VISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEK 237
Query: 417 EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG 456
T + H G ++ + F D N+ +++SDD +LR+W G
Sbjct: 238 TPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG 277
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 9/163 (5%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFC-NDGT 353
H VS + G +S D +K+WD+ + +Y H+ V ++ + +
Sbjct: 126 HDDIVSTVSVL-SSGTQAVSGSKDICIKVWDLAQQ-VVLSSYRAHAAQVTCVAASPHKDS 183
Query: 354 KFLTASYDKNIKYWDTET---GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410
FL+ S D I WDT I + G +P + +P + + + G + +
Sbjct: 184 VFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHP--QQSEVFVFGDENGTVSL 241
Query: 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS-SDDKSLRV 452
D + H V + F ++ F+ S S+D SL V
Sbjct: 242 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 67/184 (36%), Gaps = 8/184 (4%)
Query: 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIP 458
++G D I WD+ + + Y H V + + + F++ S+D + +W+ P
Sbjct: 143 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP 202
Query: 459 VVIKYISEPHMHSMP-SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517
I +P S++ HP + + +N + + V G
Sbjct: 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTG 262
Query: 518 YACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576
FSP F+ S + D ++FR+ + H W PL S + T
Sbjct: 263 LV----FSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRDFVRDATWSPLNHSLLTT 317
Query: 577 CGWD 580
GWD
Sbjct: 318 VGWD 321
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 139 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 196
Query: 344 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 375
RD D G K ++ D ++K W + +++
Sbjct: 197 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 232
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 98 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 155
Query: 344 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 375
RD D G K ++ D ++K W + +++
Sbjct: 156 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 191
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.4 bits (80), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 103 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 160
Query: 344 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 375
RD D G K ++ D ++K W + +++
Sbjct: 161 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 196
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 159
Query: 344 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 375
RD D G K ++ D ++K W + +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.4 bits (80), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/96 (19%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAV 343
I + + + GH ++ ++F P+ +L+LS D +++W++ + G +
Sbjct: 102 ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNI--QTDTLVAIFGGVEGH 159
Query: 344 RDISFCND----GTKFLTASYDKNIKYWDTETGQVI 375
RD D G K ++ D ++K W + +++
Sbjct: 160 RDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMM 195
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRTY-MGHSKAVRDISFCNDG 352
H K V+ + P + +A +D VKIWD+ GK Y + H V F DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 353 TKFLTASYDKNIKY-----WDTETGQV 374
+ LT I+ WD G +
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLI 335
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRTY-MGHSKAVRDISFCNDG 352
H K V+ + P + +A +D VKIWD+ GK Y + H V F DG
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 353 TKFLTASYDKNIKY-----WDTETGQV 374
+ LT I+ WD G +
Sbjct: 309 ARLLTTDQKSEIRVYSASQWDCPLGLI 335
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 35/87 (40%), Gaps = 7/87 (8%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRTY-MGHSKAVRDISFCNDG 352
H K V+ + P + +A +D VKIWD+ GK Y + H V F DG
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 353 TKFLTASYDKNIKY-----WDTETGQV 374
+ LT I+ WD G +
Sbjct: 310 ARLLTTDQKSEIRVYSASQWDCPLGLI 336
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCN 350
WS H+K + + FP D + IW +SG + + H V +
Sbjct: 311 WSPHSKEIMSTHGFP-----------DNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP 359
Query: 351 DGTKFLTASYDKNIKYWDTETG-QVIRTFSTGKIP 384
DG TA+ D+N+K+W G V R K P
Sbjct: 360 DGRILSTAASDENLKFWRVYDGDHVKRPIPITKTP 394
Score = 32.0 bits (71), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 86/211 (40%), Gaps = 12/211 (5%)
Query: 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF 348
+ T +GH V + + H++ S + DV + + T GHS V +++
Sbjct: 169 LRTMAGHQARVGCLSW---NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAW 225
Query: 349 CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA---GMSD 405
+DG + + D ++ WD + I F+ VK Q+ LLA G D
Sbjct: 226 RSDGLQLASGGNDNVVQIWDARSS--IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMD 283
Query: 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKY 463
K+I W+ T D V ++ + +++ +++ D +L +W + + K
Sbjct: 284 KQIHFWNAATGARVNTVDAG-SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342
Query: 464 ISEP-HMHSMPSISLHPNTNWLAAQSLDNQI 493
+ P H + +L P+ L+ + D +
Sbjct: 343 VDIPAHDTRVLYSALSPDGRILSTAASDENL 373
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 308 YGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCND--GTKFLTASYDKNI 364
YG + + D VKI+DV N G+ + + GH V +++ + G + SYD+ +
Sbjct: 24 YGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKV 83
Query: 365 KYWDTETG 372
W E G
Sbjct: 84 IIWREENG 91
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWL 484
A + + N ++F S + + + F V K+I +P ++ S+ HPN+ L
Sbjct: 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
Query: 485 AAQSLDNQILIYS 497
AA S D + I+S
Sbjct: 158 AAGSCDFKCRIFS 170
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWL 484
A + + N ++F S + + + F V K+I +P ++ S+ HPN+ L
Sbjct: 98 AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLL 157
Query: 485 AAQSLDNQILIYS 497
AA S D + I+S
Sbjct: 158 AAGSCDFKCRIFS 170
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 288 LVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWD 325
L +W H + AI + P+YG +I SA D VK+W+
Sbjct: 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 288 LVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWD 325
L +W H + AI + P+YG +I SA D VK+W+
Sbjct: 47 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 85
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 288 LVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWD 325
L +W H + AI + P+YG +I SA D VK+W+
Sbjct: 49 LSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE 87
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 337 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 378
HS V +SF + G +A +D +++WD +T + I T
Sbjct: 298 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 339
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 335 TYMGHSKAVRDISFCNDGTKFLTASYDKN----IKYWDTETGQVIRTFST---------- 380
+ + +S ++R + F G+ L ++D N I ++TE G+ I + S
Sbjct: 238 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 296
Query: 381 --GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 425
+V+ L+ +D + + AG D K+ WD+ TKE + H
Sbjct: 297 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 342
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 337 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 378
HS V +SF + G +A +D +++WD +T + I T
Sbjct: 288 FAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTL 329
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 18/107 (16%)
Query: 335 TYMGHSKAVRDISFCNDGTKFLTASYDKN----IKYWDTETGQVIRTFST---------- 380
+ + +S ++R + F G+ L ++D N I ++TE G+ I + S
Sbjct: 228 SMINNSNSIRSVKFSPQGS-LLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLG 286
Query: 381 --GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 425
+V+ L+ +D + + AG D K+ WD+ TKE + H
Sbjct: 287 EFAHSSWVMSLSFNDSGETLCSAGW-DGKLRFWDVKTKERITTLNMH 332
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 287 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVFNSG-KCMRTYMGHSKAVR 344
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 103
Query: 345 DISFC--NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 401
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 104 SVQWAPHEYGPLLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 143
Query: 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF---GIP 458
W T E E +H G +R+FVT D +++W++
Sbjct: 144 HAIGVNSASWAPATIE---EDGEHNGT-------KESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 459 VVIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515
V++ E H + ++ P ++LA+ S D +I++ KK
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 516 AGYACQVNFSPDGRFVMSGDGEGKCWFW 543
+ ++S G + G+ K W
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Query: 306 PKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNI 364
P H++ + G D + IWDV + H + ++ F + L T S D ++
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 365 KYWDTET 371
+WD T
Sbjct: 306 WHWDAST 312
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 65/156 (41%), Gaps = 6/156 (3%)
Query: 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 494
V NN VT +D + ++ ++ I ++ +++ L S+ Q+
Sbjct: 157 VCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILTVNSI-GQLK 215
Query: 495 IYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-GKCWFWDWKSCKV-F 551
I+ R++ + ++ G V + V+ P+ + V++ G+ G WD + +
Sbjct: 216 IWDFRQQGNEPSQILSLTGDRVPLHC--VDRHPNQQHVVATGGQDGMLSIWDVRQGTMPV 273
Query: 552 RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
LK HE +HP + TC DG + +WD
Sbjct: 274 SLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 325
GH KG+ ++ + + HL+LS+G D V +W+
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWN 291
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 45/241 (18%), Positives = 97/241 (40%), Gaps = 38/241 (15%)
Query: 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND 351
+S H+ V ++F K +++ S G + ++ IWD+ KC + ++ S
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDM---NKCTESPSNYTPLTPGQSM--- 162
Query: 352 GTKFLTASYDKNIKY-WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410
+S D+ I W+ V + + + L K+ I L+ S ++
Sbjct: 163 ------SSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA--KKEVIHLSYTSPNSGIK 214
Query: 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF-GIPVVIKYISEPHM 469
++ + + + ++ V T T DN D S+ +W+ ++ +++ H
Sbjct: 215 QQLS---VVEWHPKNSTRVATATGSDN---------DPSILIWDLRNANTPLQTLNQGHQ 262
Query: 470 HSMPSIS-LHPNTNWLAAQSLDNQILIYSTRERFQLNK---------KKRFAGHIVAGYA 519
+ S+ H + + L + DN +L+++ QL++ K +FA +A
Sbjct: 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFA 322
Query: 520 C 520
C
Sbjct: 323 C 323
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 287 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVFNSG-KCMRTYMGHSKAVR 344
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVN 103
Query: 345 DISFC--NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 401
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 104 SVQWAPHEYGPMLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 143
Query: 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF---GIP 458
W T E E +H G +R+FVT D +++W++
Sbjct: 144 HAIGVNSASWAPATIE---EDGEHNGT-------KESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 459 VVIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515
V++ E H + ++ P +++A+ S D +I++ KK
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 516 AGYACQVNFSPDGRFVMSGDGEGKCWFW 543
+ ++S G + G+ K W
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|1L0Q|A Chain A, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|B Chain B, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|C Chain C, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
pdb|1L0Q|D Chain D, Tandem Yvtn Beta-Propeller And Pkd Domains From An
Archaeal Surface Layer Protein
Length = 391
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 346 ISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS 404
++ DG K ++T + DK + +T T VI T S G+ P + + PD K + +A
Sbjct: 121 LALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTK--VYVANFD 178
Query: 405 DKKIVQWDMNTKEI 418
I D T +
Sbjct: 179 SXSISVIDTVTNSV 192
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY---MGHSKAVRDISFC-N 350
H V+ F P+ L+ ++ +D VK+WD+ N K +Y M H K V F
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI-KDKNSYIAEMPHEKPVNAAYFNPT 260
Query: 351 DGTKFLTASYDKNIKYWDT 369
D TK LT I+ + +
Sbjct: 261 DSTKLLTTDQRNEIRVYSS 279
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 491 NQILIYSTRERFQLNKKKRFAGHIVAGYA---------CQVNFSPDGRFVMSGDGEGKCW 541
NQ+ + S R L + F+G ++ +A C V+ S + + +GD G+
Sbjct: 131 NQLFVSSIRGATTL---RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 187
Query: 542 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
++F+ K H+ E++P +AT D +K WD
Sbjct: 188 LLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 232
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 98/268 (36%), Gaps = 41/268 (15%)
Query: 287 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVFNSG-KCMRTYMGHSKAVR 344
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 44 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVN 103
Query: 345 DISFC--NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 401
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 104 SVQWAPHEYGPXLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 143
Query: 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF---GIP 458
W T E E +H G +R+FVT D +++W++
Sbjct: 144 HAIGVNSASWAPATIE---EDGEHNG-------TKESRKFVTGGADNLVKIWKYNSDAQT 193
Query: 459 VVIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515
V++ E H + ++ P ++ A+ S D +I++ KK
Sbjct: 194 YVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 253
Query: 516 AGYACQVNFSPDGRFVMSGDGEGKCWFW 543
+ ++S G + G+ K W
Sbjct: 254 PDVLWRASWSLSGNVLALSGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 57/268 (21%), Positives = 99/268 (36%), Gaps = 41/268 (15%)
Query: 287 RLVHTWSGHTKGVSAIRF-FPKYGHLILSAGMDTKVKIWDVFNSG-KCMRTYMGHSKAVR 344
+L+ T +GH V + + PK+G ++ S D KV IW N + + HS +V
Sbjct: 46 KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVN 105
Query: 345 DISFC--NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILL-A 401
+ + G L AS D GK+ VV+ + I++ A
Sbjct: 106 SVQWAPHEYGPLLLVASSD-------------------GKVS-VVEFKENGTTSPIIIDA 145
Query: 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF---GIP 458
W T E E +H G +R+FVT D +++W++
Sbjct: 146 HAIGVNSASWAPATIE---EDGEHNG-------TKESRKFVTGGADNLVKIWKYNSDAQT 195
Query: 459 VVIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515
V++ E H + ++ P ++LA+ S D +I++ KK
Sbjct: 196 YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKF 255
Query: 516 AGYACQVNFSPDGRFVMSGDGEGKCWFW 543
+ ++S G + G+ K W
Sbjct: 256 PDVLWRASWSLSGNVLALSGGDNKVTLW 283
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY---MGHSKAVRDISFC-N 350
H V+ F P+ L+ ++ +D VK+WD+ N K +Y M H K V F
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNI-KDKNSYIAEMPHEKPVNAAYFNPT 261
Query: 351 DGTKFLTASYDKNIKYWDT 369
D TK LT I+ + +
Sbjct: 262 DSTKLLTTDQRNEIRVYSS 280
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 13/106 (12%)
Query: 491 NQILIYSTRERFQLNKKKRFAGHIVAGYA---------CQVNFSPDGRFVMSGDGEGKCW 541
NQ+ + S R L + F+G ++ +A C V+ S + + +GD G+
Sbjct: 132 NQLFVSSIRGATTL---RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLL 188
Query: 542 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587
++F+ K H+ E++P +AT D +K WD
Sbjct: 189 LLGLDGHEIFKE-KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWD 233
>pdb|2DR1|A Chain A, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
pdb|2DR1|B Chain B, Crystal Structure Of The Ph1308 Protein From Pyrococcus
Horikoshii Ot3
Length = 386
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 16/121 (13%)
Query: 363 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA----GMSDKKIVQWDMNTKEI 418
I Y +T TG + +P + K+ + DK + A G +D K +W ++ +
Sbjct: 151 TITYNETSTGVL------NPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKWGLDV--V 202
Query: 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHSMPS 474
+ G + + RF+ ++ R W F IP+ +KY+ E P MP
Sbjct: 203 FSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ 262
Query: 475 I 475
+
Sbjct: 263 V 263
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,647,382
Number of Sequences: 62578
Number of extensions: 776550
Number of successful extensions: 2789
Number of sequences better than 100.0: 105
Number of HSP's better than 100.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1758
Number of HSP's gapped (non-prelim): 384
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)