Query 007855
Match_columns 587
No_of_seqs 1164 out of 2472
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 16:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007855.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007855hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0282 mRNA splicing factor [ 100.0 4.2E-87 9.1E-92 661.4 28.4 460 65-587 42-503 (503)
2 KOG0271 Notchless-like WD40 re 100.0 5.4E-44 1.2E-48 344.9 26.6 324 238-586 112-478 (480)
3 KOG0271 Notchless-like WD40 re 100.0 9.4E-44 2E-48 343.2 25.6 293 286-587 105-437 (480)
4 KOG0272 U4/U6 small nuclear ri 100.0 2.9E-41 6.4E-46 330.2 23.9 287 289-587 168-458 (459)
5 KOG0286 G-protein beta subunit 100.0 2.1E-39 4.5E-44 303.8 34.4 290 287-587 46-343 (343)
6 KOG0265 U5 snRNP-specific prot 100.0 1.6E-37 3.4E-42 292.3 27.8 293 288-585 39-334 (338)
7 KOG0318 WD40 repeat stress pro 100.0 4.7E-36 1E-40 300.5 35.3 339 236-587 134-558 (603)
8 KOG0272 U4/U6 small nuclear ri 100.0 2.6E-37 5.7E-42 302.5 24.8 278 244-544 178-458 (459)
9 KOG0285 Pleiotropic regulator 100.0 6E-37 1.3E-41 293.9 26.6 292 281-586 136-436 (460)
10 KOG0293 WD40 repeat-containing 100.0 5.1E-37 1.1E-41 299.1 24.0 295 282-586 210-510 (519)
11 KOG0279 G protein beta subunit 100.0 1.8E-35 3.9E-40 275.9 31.9 289 287-587 6-311 (315)
12 KOG0273 Beta-transducin family 100.0 3.2E-35 6.9E-40 291.3 30.7 321 249-587 187-521 (524)
13 KOG0295 WD40 repeat-containing 100.0 4.3E-36 9.3E-41 289.1 23.6 290 286-587 98-404 (406)
14 KOG0315 G-protein beta subunit 100.0 5.3E-35 1.1E-39 268.5 29.6 270 309-587 10-286 (311)
15 cd00200 WD40 WD40 domain, foun 100.0 6.3E-34 1.4E-38 282.9 38.1 287 289-587 2-289 (289)
16 KOG0316 Conserved WD40 repeat- 100.0 1.6E-34 3.6E-39 263.2 27.9 288 284-586 5-296 (307)
17 KOG0315 G-protein beta subunit 100.0 1E-33 2.2E-38 260.1 31.2 294 251-567 8-309 (311)
18 KOG0279 G protein beta subunit 100.0 4.3E-34 9.2E-39 266.8 29.2 280 253-546 28-313 (315)
19 KOG0296 Angio-associated migra 100.0 6.2E-34 1.4E-38 274.4 30.2 286 289-587 57-396 (399)
20 KOG0266 WD40 repeat-containing 100.0 5.8E-33 1.2E-37 297.7 33.5 291 288-587 150-452 (456)
21 KOG0284 Polyadenylation factor 100.0 1.6E-34 3.4E-39 281.8 18.7 291 284-587 83-378 (464)
22 KOG0291 WD40-repeat-containing 100.0 3E-32 6.5E-37 283.2 34.1 271 279-554 333-620 (893)
23 KOG0291 WD40-repeat-containing 100.0 8.4E-32 1.8E-36 279.9 35.5 299 282-587 131-506 (893)
24 KOG0263 Transcription initiati 100.0 1.4E-32 3E-37 288.6 29.2 278 281-568 363-695 (707)
25 KOG0273 Beta-transducin family 100.0 8.8E-32 1.9E-36 266.9 29.3 292 283-587 166-480 (524)
26 KOG0643 Translation initiation 100.0 4.4E-32 9.6E-37 251.7 23.8 284 291-586 5-314 (327)
27 KOG0319 WD40-repeat-containing 100.0 5.6E-32 1.2E-36 281.1 27.2 328 240-587 104-575 (775)
28 KOG0645 WD40 repeat protein [G 100.0 1.1E-30 2.4E-35 243.1 32.0 285 288-587 6-309 (312)
29 KOG0278 Serine/threonine kinas 100.0 1.5E-32 3.3E-37 252.3 17.7 283 290-586 8-294 (334)
30 PLN00181 protein SPA1-RELATED; 100.0 2.8E-30 6E-35 296.4 40.1 286 292-587 479-791 (793)
31 KOG0286 G-protein beta subunit 100.0 1.5E-30 3.2E-35 244.5 30.3 287 235-544 49-343 (343)
32 KOG0263 Transcription initiati 100.0 8.5E-32 1.8E-36 282.7 23.4 248 330-587 368-647 (707)
33 KOG0281 Beta-TrCP (transducin 100.0 1E-32 2.2E-37 263.8 14.3 267 295-587 196-475 (499)
34 KOG0275 Conserved WD40 repeat- 100.0 2.6E-32 5.7E-37 258.7 15.0 295 284-587 200-507 (508)
35 KOG0319 WD40-repeat-containing 100.0 1E-30 2.3E-35 271.7 26.1 291 285-586 312-616 (775)
36 KOG0313 Microtubule binding pr 100.0 1.8E-30 3.9E-35 251.6 25.0 278 294-586 103-415 (423)
37 KOG0772 Uncharacterized conser 100.0 5.6E-30 1.2E-34 256.2 27.6 299 282-586 153-484 (641)
38 KOG0295 WD40 repeat-containing 100.0 1.5E-30 3.3E-35 250.8 22.1 284 240-545 107-405 (406)
39 KOG0292 Vesicle coat complex C 100.0 1.1E-29 2.4E-34 267.5 27.1 284 291-583 4-316 (1202)
40 KOG0276 Vesicle coat complex C 100.0 3.2E-29 6.9E-34 255.8 28.0 286 288-585 5-295 (794)
41 KOG1407 WD40 repeat protein [F 100.0 4.2E-29 9.1E-34 231.3 26.1 283 290-586 14-308 (313)
42 KOG0285 Pleiotropic regulator 100.0 5E-30 1.1E-34 246.4 20.5 247 329-587 140-387 (460)
43 KOG0288 WD40 repeat protein Ti 100.0 1.9E-30 4.1E-35 253.7 17.3 294 281-586 160-458 (459)
44 KOG0276 Vesicle coat complex C 100.0 1.1E-29 2.4E-34 259.1 22.4 246 333-587 6-255 (794)
45 KOG0640 mRNA cleavage stimulat 100.0 1.8E-29 3.9E-34 238.5 22.1 291 288-586 104-423 (430)
46 KOG0268 Sof1-like rRNA process 100.0 3E-30 6.5E-35 248.5 15.5 286 285-586 55-342 (433)
47 KOG0318 WD40 repeat stress pro 100.0 6.7E-28 1.5E-32 242.2 32.4 293 287-587 50-348 (603)
48 KOG0284 Polyadenylation factor 100.0 1.6E-30 3.6E-35 253.8 13.3 255 280-545 122-379 (464)
49 KOG0266 WD40 repeat-containing 100.0 2.7E-28 5.9E-33 261.6 31.4 279 249-546 167-454 (456)
50 KOG0645 WD40 repeat protein [G 100.0 6.2E-28 1.3E-32 224.7 28.4 286 238-546 11-311 (312)
51 KOG0283 WD40 repeat-containing 100.0 1.2E-28 2.6E-33 261.1 26.9 252 287-546 257-576 (712)
52 KOG0306 WD40-repeat-containing 100.0 4.7E-28 1E-32 252.0 29.9 298 283-586 94-577 (888)
53 KOG0265 U5 snRNP-specific prot 100.0 2.4E-28 5.3E-33 230.4 24.6 284 237-543 43-335 (338)
54 KOG0316 Conserved WD40 repeat- 100.0 1.1E-28 2.3E-33 225.3 21.1 243 331-587 8-255 (307)
55 KOG0292 Vesicle coat complex C 100.0 3.8E-28 8.3E-33 256.0 28.0 307 266-582 21-389 (1202)
56 KOG1446 Histone H3 (Lys4) meth 100.0 8E-27 1.7E-31 222.3 34.2 287 287-586 5-300 (311)
57 cd00200 WD40 WD40 domain, foun 100.0 5.5E-27 1.2E-31 232.9 34.5 278 243-544 11-289 (289)
58 PLN00181 protein SPA1-RELATED; 100.0 4.2E-27 9.1E-32 270.2 38.4 288 247-545 489-792 (793)
59 KOG0299 U3 snoRNP-associated p 100.0 2.5E-28 5.3E-33 242.1 23.8 286 289-583 135-450 (479)
60 KOG0647 mRNA export protein (c 100.0 1.3E-27 2.7E-32 225.7 26.7 281 295-580 26-315 (347)
61 KOG0274 Cdc4 and related F-box 100.0 2.6E-27 5.6E-32 254.0 31.6 276 290-587 201-480 (537)
62 KOG0305 Anaphase promoting com 100.0 1.7E-27 3.7E-32 246.6 28.2 273 300-587 181-459 (484)
63 KOG0277 Peroxisomal targeting 100.0 1.1E-27 2.4E-32 221.0 22.4 280 300-587 12-307 (311)
64 KOG0306 WD40-repeat-containing 100.0 7.6E-27 1.6E-31 243.0 28.9 283 290-587 367-662 (888)
65 KOG0277 Peroxisomal targeting 100.0 1.7E-27 3.7E-32 219.8 20.0 268 263-545 36-308 (311)
66 KOG0310 Conserved WD40 repeat- 100.0 7.5E-27 1.6E-31 233.3 25.9 277 296-585 26-305 (487)
67 KOG4283 Transcription-coupled 100.0 1.1E-26 2.5E-31 218.3 24.8 292 293-586 40-362 (397)
68 PTZ00421 coronin; Provisional 100.0 1.6E-25 3.4E-30 239.8 35.1 264 297-568 21-313 (493)
69 KOG0281 Beta-TrCP (transducin 100.0 4E-28 8.7E-33 232.3 13.2 263 257-550 211-481 (499)
70 KOG0296 Angio-associated migra 100.0 6.5E-26 1.4E-30 219.1 27.0 283 238-546 61-398 (399)
71 KOG1446 Histone H3 (Lys4) meth 99.9 1.9E-25 4.1E-30 213.0 29.1 248 332-587 6-260 (311)
72 KOG0288 WD40 repeat protein Ti 99.9 5.2E-27 1.1E-31 229.8 17.7 258 275-543 196-458 (459)
73 KOG1273 WD40 repeat protein [G 99.9 1.1E-25 2.5E-30 213.4 25.9 297 283-587 12-320 (405)
74 KOG0300 WD40 repeat-containing 99.9 2.5E-26 5.5E-31 217.6 21.0 293 285-587 137-474 (481)
75 KOG0641 WD40 repeat protein [G 99.9 3.6E-24 7.8E-29 194.5 33.1 285 294-586 30-346 (350)
76 KOG0294 WD40 repeat-containing 99.9 2E-25 4.4E-30 212.0 25.7 250 280-587 27-279 (362)
77 KOG0289 mRNA splicing factor [ 99.9 8.9E-26 1.9E-30 222.2 23.8 263 275-545 240-505 (506)
78 KOG0973 Histone transcription 99.9 1.3E-25 2.9E-30 243.6 27.2 286 291-586 7-352 (942)
79 KOG0274 Cdc4 and related F-box 99.9 1.6E-25 3.4E-30 240.3 27.6 268 272-558 224-494 (537)
80 PTZ00420 coronin; Provisional 99.9 1.5E-24 3.3E-29 233.4 34.6 265 257-528 34-318 (568)
81 KOG0643 Translation initiation 99.9 8.4E-25 1.8E-29 203.4 27.4 286 239-547 8-318 (327)
82 PTZ00421 coronin; Provisional 99.9 4E-24 8.6E-29 229.1 36.0 230 291-527 70-314 (493)
83 PTZ00420 coronin; Provisional 99.9 9.1E-24 2E-28 227.5 36.2 247 315-569 50-317 (568)
84 KOG1408 WD40 repeat protein [F 99.9 2.9E-25 6.3E-30 229.5 22.2 293 290-586 363-710 (1080)
85 KOG0293 WD40 repeat-containing 99.9 2.6E-25 5.6E-30 217.6 20.7 276 249-547 232-514 (519)
86 KOG0289 mRNA splicing factor [ 99.9 1.6E-24 3.5E-29 213.4 26.2 280 296-586 219-503 (506)
87 KOG1407 WD40 repeat protein [F 99.9 1.8E-24 3.9E-29 200.6 24.7 271 244-537 23-293 (313)
88 KOG0282 mRNA splicing factor [ 99.9 4.3E-26 9.3E-31 227.5 15.0 249 329-587 203-460 (503)
89 KOG0301 Phospholipase A2-activ 99.9 1.7E-24 3.7E-29 224.2 27.2 278 286-586 4-285 (745)
90 KOG0308 Conserved WD40 repeat- 99.9 1.5E-25 3.3E-30 230.3 19.0 318 252-587 36-391 (735)
91 KOG2055 WD40 repeat protein [G 99.9 8.2E-24 1.8E-28 210.0 30.5 283 296-586 213-509 (514)
92 KOG1036 Mitotic spindle checkp 99.9 3.3E-24 7.2E-29 203.5 26.4 273 296-579 13-294 (323)
93 KOG0300 WD40 repeat-containing 99.9 6.3E-25 1.4E-29 208.2 21.3 289 237-548 144-478 (481)
94 KOG0310 Conserved WD40 repeat- 99.9 6.2E-25 1.3E-29 219.6 22.2 246 287-545 59-308 (487)
95 KOG0278 Serine/threonine kinas 99.9 1.1E-25 2.4E-30 207.3 15.0 253 285-551 48-302 (334)
96 KOG0639 Transducin-like enhanc 99.9 4.3E-25 9.4E-30 220.4 20.4 278 294-586 417-701 (705)
97 KOG1539 WD repeat protein [Gen 99.9 1.1E-23 2.3E-28 222.2 31.8 297 276-586 182-645 (910)
98 KOG2096 WD40 repeat protein [G 99.9 4.8E-24 1E-28 202.6 25.8 291 288-585 78-398 (420)
99 KOG0283 WD40 repeat-containing 99.9 1.5E-24 3.2E-29 230.2 24.4 247 335-587 261-574 (712)
100 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.4E-23 1.6E-27 207.3 35.4 269 310-587 2-277 (300)
101 KOG4328 WD40 protein [Function 99.9 3E-24 6.5E-29 213.0 23.8 302 283-586 173-492 (498)
102 KOG0308 Conserved WD40 repeat- 99.9 5.2E-25 1.1E-29 226.3 19.0 284 295-586 20-324 (735)
103 KOG0772 Uncharacterized conser 99.9 1.5E-24 3.3E-29 217.4 21.9 281 246-544 172-485 (641)
104 KOG1332 Vesicle coat complex C 99.9 8.8E-25 1.9E-29 200.9 18.0 251 292-546 7-286 (299)
105 KOG0299 U3 snoRNP-associated p 99.9 4.6E-24 1E-28 211.9 24.0 277 249-535 150-444 (479)
106 KOG0646 WD40 repeat protein [G 99.9 1.4E-24 3E-29 216.1 20.1 250 281-569 66-330 (476)
107 KOG0313 Microtubule binding pr 99.9 3.6E-24 7.8E-29 207.9 21.8 239 338-587 103-374 (423)
108 KOG0264 Nucleosome remodeling 99.9 5.8E-24 1.3E-28 211.3 22.3 255 292-587 120-402 (422)
109 KOG0321 WD40 repeat-containing 99.9 6.1E-24 1.3E-28 218.1 22.6 278 307-587 62-389 (720)
110 KOG1274 WD40 repeat protein [G 99.9 4.5E-23 9.9E-28 219.8 29.8 263 294-571 11-283 (933)
111 KOG0268 Sof1-like rRNA process 99.9 2E-24 4.4E-29 208.4 16.1 285 238-550 63-349 (433)
112 KOG0305 Anaphase promoting com 99.9 2.7E-23 5.8E-28 215.5 25.3 251 284-548 205-463 (484)
113 KOG0973 Histone transcription 99.9 4.5E-23 9.8E-28 224.1 27.3 289 249-547 21-356 (942)
114 KOG1063 RNA polymerase II elon 99.9 7E-23 1.5E-27 212.2 27.4 293 285-586 180-645 (764)
115 KOG0275 Conserved WD40 repeat- 99.9 6.1E-24 1.3E-28 202.0 16.8 291 238-544 210-507 (508)
116 KOG0647 mRNA export protein (c 99.9 8E-23 1.7E-27 193.4 23.4 238 338-587 25-279 (347)
117 KOG0641 WD40 repeat protein [G 99.9 6.9E-22 1.5E-26 179.6 27.9 292 247-546 38-349 (350)
118 KOG0650 WD40 repeat nucleolar 99.9 1.1E-22 2.3E-27 207.5 25.1 293 281-586 385-732 (733)
119 KOG1036 Mitotic spindle checkp 99.9 1.6E-22 3.5E-27 192.1 24.0 236 339-587 12-260 (323)
120 KOG1539 WD repeat protein [Gen 99.9 8.9E-22 1.9E-26 207.8 31.5 286 296-587 159-604 (910)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 7.9E-21 1.7E-25 192.5 37.4 267 287-568 22-300 (300)
122 KOG0269 WD40 repeat-containing 99.9 5.8E-23 1.3E-27 215.1 18.6 292 282-584 27-335 (839)
123 KOG0646 WD40 repeat protein [G 99.9 3.6E-22 7.8E-27 198.9 23.3 260 315-587 13-305 (476)
124 KOG0640 mRNA cleavage stimulat 99.9 2.1E-22 4.6E-27 190.8 19.7 299 240-546 111-426 (430)
125 KOG2445 Nuclear pore complex c 99.9 6.3E-21 1.4E-25 181.0 26.5 254 293-586 10-315 (361)
126 KOG0269 WD40 repeat-containing 99.9 7.7E-23 1.7E-27 214.2 14.0 245 298-548 89-342 (839)
127 KOG0264 Nucleosome remodeling 99.9 2.1E-21 4.5E-26 193.2 21.8 213 286-500 167-405 (422)
128 KOG2106 Uncharacterized conser 99.9 4.5E-20 9.7E-25 185.1 31.1 276 291-587 240-519 (626)
129 KOG2106 Uncharacterized conser 99.9 7.2E-20 1.6E-24 183.6 32.0 289 281-586 139-474 (626)
130 KOG2048 WD40 repeat protein [G 99.9 4.9E-20 1.1E-24 191.1 31.0 276 296-585 25-315 (691)
131 KOG2048 WD40 repeat protein [G 99.9 6.3E-20 1.4E-24 190.2 31.4 314 271-587 85-546 (691)
132 KOG0301 Phospholipase A2-activ 99.9 5.1E-21 1.1E-25 198.6 22.8 260 255-546 27-288 (745)
133 KOG1332 Vesicle coat complex C 99.9 4.6E-21 9.9E-26 176.5 18.4 246 336-586 7-283 (299)
134 KOG1274 WD40 repeat protein [G 99.9 2.1E-20 4.6E-25 199.6 26.2 243 338-587 11-260 (933)
135 KOG1063 RNA polymerase II elon 99.9 2.3E-20 5.1E-25 193.6 25.1 293 287-586 45-388 (764)
136 KOG1408 WD40 repeat protein [F 99.9 1.8E-20 3.9E-25 194.3 24.1 284 299-587 327-669 (1080)
137 KOG2055 WD40 repeat protein [G 99.9 2.9E-20 6.4E-25 184.9 24.5 285 242-546 214-512 (514)
138 KOG1034 Transcriptional repres 99.9 1.9E-20 4E-25 179.2 21.3 291 291-587 33-381 (385)
139 KOG0294 WD40 repeat-containing 99.9 3E-20 6.4E-25 177.0 22.1 229 252-501 52-283 (362)
140 KOG0267 Microtubule severing p 99.9 5E-22 1.1E-26 206.7 10.7 237 291-538 23-260 (825)
141 KOG0267 Microtubule severing p 99.9 8E-22 1.7E-26 205.1 10.1 254 309-579 4-258 (825)
142 KOG4378 Nuclear protein COP1 [ 99.8 6.3E-20 1.4E-24 183.6 20.8 260 298-568 36-303 (673)
143 KOG4227 WD40 repeat protein [G 99.8 1.3E-19 2.7E-24 176.5 22.3 292 290-587 50-385 (609)
144 KOG0302 Ribosome Assembly prot 99.8 9.1E-20 2E-24 177.3 20.4 249 291-582 146-432 (440)
145 KOG0322 G-protein beta subunit 99.8 3.1E-20 6.6E-25 172.9 15.5 298 284-587 2-321 (323)
146 KOG0650 WD40 repeat nucleolar 99.8 1.4E-19 3E-24 184.9 21.5 246 331-586 391-677 (733)
147 KOG0639 Transducin-like enhanc 99.8 4.4E-20 9.4E-25 184.9 16.6 236 338-586 417-660 (705)
148 KOG1188 WD40 repeat protein [G 99.8 9.6E-20 2.1E-24 175.3 18.3 272 310-586 41-343 (376)
149 KOG2096 WD40 repeat protein [G 99.8 5.2E-19 1.1E-23 168.5 22.7 245 334-586 80-357 (420)
150 KOG2919 Guanine nucleotide-bin 99.8 9.8E-19 2.1E-23 167.0 23.8 272 299-579 52-360 (406)
151 KOG1538 Uncharacterized conser 99.8 6E-19 1.3E-23 181.8 23.4 272 298-587 14-291 (1081)
152 KOG0270 WD40 repeat-containing 99.8 1.3E-19 2.7E-24 179.8 17.5 236 309-551 192-454 (463)
153 KOG1240 Protein kinase contain 99.8 1.4E-18 3E-23 190.2 26.9 304 283-586 1035-1430(1431)
154 COG2319 FOG: WD40 repeat [Gene 99.8 1.2E-16 2.6E-21 166.9 41.0 289 286-587 145-440 (466)
155 KOG0270 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 180.0 16.2 211 291-504 238-454 (463)
156 KOG1334 WD40 repeat protein [G 99.8 7E-20 1.5E-24 183.3 14.1 296 287-586 133-463 (559)
157 KOG0302 Ribosome Assembly prot 99.8 7.6E-19 1.7E-23 170.9 20.0 239 252-496 164-435 (440)
158 COG2319 FOG: WD40 repeat [Gene 99.8 1.1E-16 2.4E-21 167.3 38.1 286 291-587 60-357 (466)
159 KOG0642 Cell-cycle nuclear pro 99.8 2.1E-19 4.5E-24 183.1 16.1 261 288-587 286-559 (577)
160 KOG1034 Transcriptional repres 99.8 1.5E-19 3.3E-24 173.0 13.6 260 266-546 105-383 (385)
161 KOG0307 Vesicle coat complex C 99.8 1.2E-19 2.5E-24 198.5 13.9 279 301-586 11-324 (1049)
162 KOG1517 Guanine nucleotide bin 99.8 4.6E-18 1E-22 183.5 24.1 281 297-586 1065-1378(1387)
163 KOG4378 Nuclear protein COP1 [ 99.8 1.8E-18 4E-23 173.2 19.4 259 318-587 11-278 (673)
164 KOG1445 Tumor-specific antigen 99.8 3.8E-18 8.3E-23 175.0 21.1 152 255-415 94-249 (1012)
165 KOG1517 Guanine nucleotide bin 99.8 1.3E-17 2.8E-22 180.1 26.1 249 297-548 1110-1383(1387)
166 KOG4283 Transcription-coupled 99.8 7.7E-18 1.7E-22 159.0 21.0 209 337-549 40-279 (397)
167 KOG0321 WD40 repeat-containing 99.8 3E-18 6.4E-23 176.6 19.6 253 288-548 92-393 (720)
168 KOG1009 Chromatin assembly com 99.8 1.7E-17 3.6E-22 163.2 23.1 280 296-584 13-367 (434)
169 KOG0649 WD40 repeat protein [G 99.8 5E-17 1.1E-21 149.9 24.8 272 298-586 12-313 (325)
170 KOG0307 Vesicle coat complex C 99.8 5.8E-19 1.3E-23 193.1 12.6 248 297-549 65-330 (1049)
171 KOG1310 WD40 repeat protein [G 99.8 1.1E-17 2.4E-22 169.5 20.5 209 289-500 43-304 (758)
172 KOG1273 WD40 repeat protein [G 99.8 4E-17 8.6E-22 155.6 21.6 263 276-546 45-322 (405)
173 KOG0303 Actin-binding protein 99.8 1.7E-17 3.7E-22 162.4 19.4 208 291-501 76-296 (472)
174 KOG1009 Chromatin assembly com 99.8 5.1E-17 1.1E-21 159.8 22.2 283 255-551 28-377 (434)
175 KOG4328 WD40 protein [Function 99.8 2.1E-17 4.5E-22 164.6 19.2 253 288-546 226-495 (498)
176 KOG2445 Nuclear pore complex c 99.8 1.2E-16 2.6E-21 152.1 23.5 213 286-499 49-318 (361)
177 PRK11028 6-phosphogluconolacto 99.8 8.5E-16 1.9E-20 158.8 32.2 271 311-587 4-302 (330)
178 KOG1007 WD repeat protein TSSC 99.7 2.8E-16 6E-21 148.3 21.7 260 317-585 38-357 (370)
179 KOG1587 Cytoplasmic dynein int 99.7 3.3E-16 7.3E-21 167.3 23.2 246 296-547 242-517 (555)
180 KOG1587 Cytoplasmic dynein int 99.7 1.3E-15 2.9E-20 162.8 27.3 262 318-587 221-514 (555)
181 KOG0642 Cell-cycle nuclear pro 99.7 5.9E-17 1.3E-21 165.4 16.1 252 243-504 296-566 (577)
182 KOG2919 Guanine nucleotide-bin 99.7 2.2E-15 4.9E-20 144.3 24.2 279 248-537 57-361 (406)
183 KOG1963 WD40 repeat protein [G 99.7 3.3E-15 7.1E-20 160.0 28.0 287 294-587 203-536 (792)
184 KOG0644 Uncharacterized conser 99.7 3.6E-18 7.7E-23 180.3 5.0 239 287-587 181-424 (1113)
185 KOG1538 Uncharacterized conser 99.7 3.1E-16 6.8E-21 162.0 19.0 242 286-545 43-292 (1081)
186 PRK01742 tolB translocation pr 99.7 7.9E-16 1.7E-20 164.6 22.9 234 318-568 183-425 (429)
187 KOG0303 Actin-binding protein 99.7 8.3E-16 1.8E-20 150.7 19.8 254 309-568 44-319 (472)
188 PRK11028 6-phosphogluconolacto 99.7 2.2E-14 4.9E-19 148.2 31.4 270 259-546 8-304 (330)
189 KOG0290 Conserved WD40 repeat- 99.7 3.2E-15 6.9E-20 141.4 22.3 284 289-580 38-357 (364)
190 KOG0290 Conserved WD40 repeat- 99.7 2E-15 4.2E-20 142.8 20.5 252 331-587 36-316 (364)
191 KOG2110 Uncharacterized conser 99.7 6E-14 1.3E-18 137.0 31.2 236 296-546 5-248 (391)
192 KOG0771 Prolactin regulatory e 99.7 4E-16 8.6E-21 154.7 15.3 198 300-500 148-355 (398)
193 KOG0771 Prolactin regulatory e 99.7 6.6E-15 1.4E-19 146.1 22.9 196 385-585 148-350 (398)
194 KOG1524 WD40 repeat-containing 99.7 1E-15 2.2E-20 155.0 15.6 209 309-544 75-284 (737)
195 KOG1523 Actin-related protein 99.7 1.1E-14 2.3E-19 139.7 21.7 247 290-580 4-269 (361)
196 KOG1007 WD repeat protein TSSC 99.7 3.4E-15 7.4E-20 141.0 17.5 215 281-499 107-361 (370)
197 KOG1188 WD40 repeat protein [G 99.6 4.3E-15 9.2E-20 143.5 16.6 256 286-545 60-345 (376)
198 KOG0322 G-protein beta subunit 99.6 3.5E-15 7.5E-20 139.4 13.6 278 255-545 16-322 (323)
199 KOG4227 WD40 repeat protein [G 99.6 4.2E-14 9.1E-19 138.3 21.4 295 237-545 52-386 (609)
200 PF02239 Cytochrom_D1: Cytochr 99.6 5.9E-13 1.3E-17 138.5 31.2 276 309-587 5-345 (369)
201 PRK03629 tolB translocation pr 99.6 3.6E-13 7.8E-18 143.9 29.8 235 319-568 179-427 (429)
202 KOG1963 WD40 repeat protein [G 99.6 1.4E-13 3.1E-18 147.7 26.1 275 302-585 22-318 (792)
203 KOG2321 WD40 repeat protein [G 99.6 1.1E-13 2.3E-18 141.7 24.0 277 294-585 49-339 (703)
204 KOG2110 Uncharacterized conser 99.6 1.5E-12 3.2E-17 127.4 30.4 252 298-557 48-343 (391)
205 KOG1445 Tumor-specific antigen 99.6 1.6E-14 3.6E-19 148.7 15.9 231 315-549 599-847 (1012)
206 KOG2394 WD40 protein DMR-N9 [G 99.6 1E-13 2.3E-18 140.9 20.6 218 343-567 126-383 (636)
207 KOG1240 Protein kinase contain 99.6 1.9E-13 4.2E-18 150.5 23.7 254 324-587 1034-1332(1431)
208 KOG1310 WD40 repeat protein [G 99.6 2.8E-14 6.1E-19 145.0 15.2 218 334-552 44-309 (758)
209 PRK04922 tolB translocation pr 99.6 6.2E-13 1.3E-17 142.5 26.1 235 319-568 184-432 (433)
210 KOG2111 Uncharacterized conser 99.6 2.7E-12 5.9E-17 123.3 26.3 178 319-501 75-258 (346)
211 KOG2111 Uncharacterized conser 99.6 6.3E-12 1.4E-16 120.8 28.6 270 299-583 8-316 (346)
212 KOG3881 Uncharacterized conser 99.6 3.1E-13 6.7E-18 132.9 20.1 262 296-568 55-341 (412)
213 PRK02889 tolB translocation pr 99.6 1.2E-12 2.6E-17 139.9 26.2 235 319-568 176-424 (427)
214 KOG4497 Uncharacterized conser 99.6 1.5E-13 3.2E-18 132.1 16.7 273 297-586 49-388 (447)
215 KOG1272 WD40-repeat-containing 99.5 1.6E-14 3.5E-19 144.4 10.3 257 297-570 130-391 (545)
216 PRK05137 tolB translocation pr 99.5 4.8E-12 1E-16 135.8 29.9 234 319-568 182-432 (435)
217 KOG2139 WD40 repeat protein [G 99.5 1.6E-12 3.4E-17 126.7 23.2 242 296-545 140-430 (445)
218 KOG1272 WD40-repeat-containing 99.5 2.9E-14 6.2E-19 142.6 11.0 228 343-586 132-359 (545)
219 KOG2139 WD40 repeat protein [G 99.5 5.4E-12 1.2E-16 123.0 25.8 280 298-586 100-428 (445)
220 PF02239 Cytochrom_D1: Cytochr 99.5 1.7E-11 3.6E-16 127.7 31.6 264 285-555 25-356 (369)
221 KOG0649 WD40 repeat protein [G 99.5 1.7E-12 3.6E-17 120.3 20.5 231 342-586 12-271 (325)
222 KOG1524 WD40 repeat-containing 99.5 1.9E-13 4.1E-18 138.8 14.7 220 338-568 12-237 (737)
223 KOG0644 Uncharacterized conser 99.5 2.6E-14 5.7E-19 151.5 8.8 260 270-550 206-472 (1113)
224 PRK01742 tolB translocation pr 99.5 1.7E-12 3.7E-17 138.9 22.8 219 290-527 197-426 (429)
225 KOG1409 Uncharacterized conser 99.5 4.9E-12 1.1E-16 122.6 20.9 312 257-587 40-392 (404)
226 KOG4497 Uncharacterized conser 99.5 2.9E-13 6.4E-18 130.1 12.4 222 345-586 13-237 (447)
227 KOG1334 WD40 repeat protein [G 99.5 4.7E-13 1E-17 134.8 14.1 255 332-587 134-422 (559)
228 KOG1354 Serine/threonine prote 99.5 8.9E-12 1.9E-16 120.7 21.0 273 296-587 25-357 (433)
229 KOG3881 Uncharacterized conser 99.5 7.1E-12 1.5E-16 123.4 20.5 209 291-504 100-325 (412)
230 KOG1523 Actin-related protein 99.5 3.4E-12 7.5E-17 122.6 17.6 204 339-586 9-233 (361)
231 TIGR02800 propeller_TolB tol-p 99.4 7.3E-11 1.6E-15 126.1 28.3 234 318-566 169-416 (417)
232 KOG2315 Predicted translation 99.4 6.3E-11 1.4E-15 121.8 26.1 269 296-587 34-388 (566)
233 PF10282 Lactonase: Lactonase, 99.4 1.4E-09 2.9E-14 113.1 36.4 266 319-587 13-320 (345)
234 KOG2394 WD40 protein DMR-N9 [G 99.4 3.5E-12 7.6E-17 129.9 15.8 194 309-525 185-383 (636)
235 PRK00178 tolB translocation pr 99.4 1.9E-10 4.2E-15 123.3 28.9 234 320-568 180-427 (430)
236 PRK04792 tolB translocation pr 99.4 2.2E-10 4.7E-15 123.1 29.1 234 320-568 199-446 (448)
237 PRK04922 tolB translocation pr 99.4 1E-10 2.2E-15 125.5 25.0 203 290-501 197-413 (433)
238 KOG2314 Translation initiation 99.4 7.1E-11 1.5E-15 120.9 21.6 268 299-582 213-560 (698)
239 PF08662 eIF2A: Eukaryotic tra 99.4 3.3E-11 7.2E-16 114.2 18.3 147 430-587 9-177 (194)
240 PF10282 Lactonase: Lactonase, 99.4 4.9E-09 1.1E-13 108.9 35.6 265 297-566 37-345 (345)
241 PRK03629 tolB translocation pr 99.4 3.1E-10 6.6E-15 121.4 27.3 221 291-526 193-427 (429)
242 PF08662 eIF2A: Eukaryotic tra 99.4 9.7E-11 2.1E-15 111.0 20.7 118 425-554 58-186 (194)
243 PRK05137 tolB translocation pr 99.4 2.9E-10 6.2E-15 122.1 26.9 204 289-501 194-414 (435)
244 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.6E-09 7.8E-14 108.0 32.6 259 319-587 27-328 (352)
245 KOG2321 WD40 repeat protein [G 99.3 6.3E-11 1.4E-15 121.7 19.5 243 338-587 49-300 (703)
246 KOG4190 Uncharacterized conser 99.3 5.8E-12 1.3E-16 128.3 11.1 282 288-585 727-1032(1034)
247 KOG1064 RAVE (regulator of V-A 99.3 1.5E-11 3.2E-16 139.9 14.6 252 309-582 2180-2439(2439)
248 TIGR03300 assembly_YfgL outer 99.3 2.7E-09 5.7E-14 112.5 29.4 259 309-586 105-376 (377)
249 PRK02889 tolB translocation pr 99.3 6.2E-10 1.3E-14 119.1 24.5 200 290-499 189-403 (427)
250 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.2E-08 4.8E-13 102.3 33.7 252 287-554 38-338 (352)
251 KOG0974 WD-repeat protein WDR6 99.3 2.2E-10 4.7E-15 125.5 19.2 200 341-547 88-289 (967)
252 COG5354 Uncharacterized protei 99.3 4.4E-09 9.5E-14 107.2 27.2 275 295-587 31-393 (561)
253 KOG1912 WD40 repeat protein [G 99.2 1.8E-09 3.9E-14 114.6 24.2 212 284-499 43-304 (1062)
254 KOG0974 WD-repeat protein WDR6 99.2 3.7E-10 8.1E-15 123.7 19.2 182 397-587 100-286 (967)
255 KOG4547 WD40 repeat-containing 99.2 3.5E-09 7.5E-14 110.0 24.1 227 350-584 3-265 (541)
256 PRK01029 tolB translocation pr 99.2 1.3E-08 2.9E-13 108.6 29.4 238 319-568 165-424 (428)
257 TIGR03300 assembly_YfgL outer 99.2 9.9E-09 2.1E-13 108.2 28.3 258 309-587 65-336 (377)
258 KOG0280 Uncharacterized conser 99.2 3.9E-09 8.5E-14 100.8 21.3 258 318-586 45-330 (339)
259 KOG1409 Uncharacterized conser 99.2 6.9E-10 1.5E-14 107.9 15.8 246 331-587 15-268 (404)
260 PLN02919 haloacid dehalogenase 99.2 4.4E-08 9.4E-13 115.0 34.1 245 300-550 571-892 (1057)
261 TIGR02800 propeller_TolB tol-p 99.2 7.1E-09 1.5E-13 110.8 25.6 201 290-499 183-397 (417)
262 KOG4547 WD40 repeat-containing 99.2 9.4E-09 2E-13 106.8 24.7 191 306-500 2-221 (541)
263 KOG4532 WD40-like repeat conta 99.2 1.1E-08 2.5E-13 96.4 22.9 243 317-568 50-312 (344)
264 KOG2041 WD40 repeat protein [G 99.2 2.9E-09 6.3E-14 111.9 20.5 275 296-585 14-333 (1189)
265 PRK00178 tolB translocation pr 99.1 1.5E-08 3.2E-13 108.9 26.4 202 290-500 192-407 (430)
266 KOG2315 Predicted translation 99.1 1.3E-08 2.9E-13 104.9 23.0 249 300-568 129-410 (566)
267 PRK04792 tolB translocation pr 99.1 3.3E-08 7.2E-13 106.3 25.4 201 291-500 212-426 (448)
268 PRK01029 tolB translocation pr 99.1 5.6E-08 1.2E-12 103.7 26.8 222 263-502 163-406 (428)
269 KOG1064 RAVE (regulator of V-A 99.1 1E-09 2.2E-14 125.5 13.3 193 291-504 2203-2403(2439)
270 PF13360 PQQ_2: PQQ-like domai 99.1 2E-07 4.4E-12 91.2 27.9 221 318-553 2-237 (238)
271 PF04762 IKI3: IKI3 family; I 99.1 9.2E-08 2E-12 110.3 28.9 273 295-586 74-376 (928)
272 PF08450 SGL: SMP-30/Gluconola 99.0 5.9E-07 1.3E-11 88.7 29.3 223 345-577 4-244 (246)
273 PLN02919 haloacid dehalogenase 99.0 2.7E-07 5.8E-12 108.4 30.7 239 344-587 571-886 (1057)
274 KOG0882 Cyclophilin-related pe 99.0 9.4E-09 2E-13 103.3 15.5 256 295-554 8-313 (558)
275 COG5170 CDC55 Serine/threonine 99.0 1.7E-08 3.8E-13 96.9 16.5 271 296-585 26-363 (460)
276 PRK11138 outer membrane biogen 99.0 3.8E-07 8.2E-12 96.7 28.6 260 309-586 120-391 (394)
277 KOG1354 Serine/threonine prote 99.0 1.4E-08 3.1E-13 98.8 15.7 200 297-501 85-361 (433)
278 KOG0309 Conserved WD40 repeat- 99.0 7.1E-09 1.5E-13 109.6 14.0 285 296-586 24-336 (1081)
279 KOG0280 Uncharacterized conser 99.0 6.6E-08 1.4E-12 92.6 19.2 202 295-501 68-286 (339)
280 PRK04043 tolB translocation pr 99.0 6.2E-07 1.3E-11 95.3 28.9 225 320-562 170-415 (419)
281 COG2706 3-carboxymuconate cycl 99.0 4.9E-06 1.1E-10 82.4 32.2 269 294-567 37-345 (346)
282 COG2706 3-carboxymuconate cycl 99.0 3.2E-06 6.9E-11 83.7 30.9 266 318-586 15-318 (346)
283 KOG4190 Uncharacterized conser 98.9 1.6E-09 3.4E-14 110.8 7.8 138 417-556 775-916 (1034)
284 COG4946 Uncharacterized protei 98.9 1.2E-06 2.5E-11 89.0 27.6 176 304-488 327-507 (668)
285 PF04762 IKI3: IKI3 family; I 98.9 7.2E-07 1.6E-11 103.0 29.8 247 295-547 119-457 (928)
286 COG5354 Uncharacterized protei 98.9 8.4E-07 1.8E-11 90.9 25.2 259 298-580 73-420 (561)
287 KOG1912 WD40 repeat protein [G 98.9 1.4E-07 3.1E-12 100.5 20.2 244 295-547 14-305 (1062)
288 KOG2041 WD40 repeat protein [G 98.9 1.6E-07 3.5E-12 99.2 19.9 244 288-544 63-335 (1189)
289 KOG0309 Conserved WD40 repeat- 98.9 2.1E-08 4.5E-13 106.1 12.3 258 283-547 56-340 (1081)
290 KOG3914 WD repeat protein WDR4 98.8 8.4E-08 1.8E-12 95.6 15.1 161 343-505 65-229 (390)
291 KOG4714 Nucleoporin [Nuclear s 98.8 5E-08 1.1E-12 91.9 12.0 165 290-457 83-255 (319)
292 PF07433 DUF1513: Protein of u 98.8 6.7E-06 1.4E-10 81.5 27.4 233 342-581 6-278 (305)
293 KOG1832 HIV-1 Vpr-binding prot 98.8 2.4E-09 5.2E-14 114.9 3.1 225 283-534 1088-1319(1516)
294 KOG2695 WD40 repeat protein [G 98.8 2E-08 4.4E-13 97.9 8.5 165 400-568 228-402 (425)
295 PF15492 Nbas_N: Neuroblastoma 98.8 6.8E-06 1.5E-10 79.2 25.4 238 302-559 3-272 (282)
296 KOG1645 RING-finger-containing 98.8 3E-07 6.4E-12 91.6 16.4 259 321-586 175-458 (463)
297 PF13360 PQQ_2: PQQ-like domai 98.7 5.1E-06 1.1E-10 81.3 24.9 215 361-587 2-228 (238)
298 KOG4714 Nucleoporin [Nuclear s 98.7 2.4E-07 5.2E-12 87.3 14.3 197 299-500 39-255 (319)
299 PRK11138 outer membrane biogen 98.7 2.5E-06 5.3E-11 90.5 23.8 258 309-587 69-351 (394)
300 KOG2066 Vacuolar assembly/sort 98.7 5E-07 1.1E-11 97.2 17.6 186 296-499 39-233 (846)
301 COG4946 Uncharacterized protei 98.7 3.2E-05 7E-10 78.8 28.6 246 313-576 240-505 (668)
302 KOG1275 PAB-dependent poly(A) 98.7 2.8E-07 6.2E-12 100.0 15.0 185 351-544 146-340 (1118)
303 KOG1920 IkappaB kinase complex 98.7 4.6E-06 1E-10 93.7 24.4 271 297-586 69-362 (1265)
304 KOG4532 WD40-like repeat conta 98.7 5.9E-06 1.3E-10 78.4 20.7 234 309-546 84-331 (344)
305 PRK04043 tolB translocation pr 98.6 3.1E-05 6.7E-10 82.4 27.4 200 362-578 169-386 (419)
306 PF08450 SGL: SMP-30/Gluconola 98.6 0.00015 3.2E-09 71.6 30.2 218 301-535 4-244 (246)
307 PF00400 WD40: WD domain, G-be 98.6 2E-07 4.3E-12 63.4 6.5 38 287-325 2-39 (39)
308 KOG3914 WD repeat protein WDR4 98.5 1E-06 2.2E-11 88.0 12.9 153 428-587 64-221 (390)
309 KOG2314 Translation initiation 98.5 1.5E-05 3.3E-10 82.6 21.5 247 298-556 251-574 (698)
310 PF07433 DUF1513: Protein of u 98.5 0.0003 6.6E-09 69.9 28.9 231 300-544 8-283 (305)
311 PF00400 WD40: WD domain, G-be 98.5 4.4E-07 9.5E-12 61.7 6.4 39 330-368 1-39 (39)
312 KOG2695 WD40 repeat protein [G 98.5 6.8E-07 1.5E-11 87.5 9.4 150 313-467 228-387 (425)
313 KOG1275 PAB-dependent poly(A) 98.5 2.5E-06 5.4E-11 92.9 14.2 152 296-455 177-341 (1118)
314 cd00216 PQQ_DH Dehydrogenases 98.4 0.00013 2.9E-09 79.4 28.0 263 309-587 61-422 (488)
315 KOG1832 HIV-1 Vpr-binding prot 98.4 1.5E-07 3.3E-12 101.5 4.7 215 331-568 1092-1311(1516)
316 KOG2114 Vacuolar assembly/sort 98.4 6E-05 1.3E-09 82.2 22.1 195 298-501 27-245 (933)
317 PF06433 Me-amine-dh_H: Methyl 98.3 0.00089 1.9E-08 67.4 28.4 244 301-557 40-331 (342)
318 KOG4649 PQQ (pyrrolo-quinoline 98.3 0.00054 1.2E-08 65.2 25.2 105 309-416 63-167 (354)
319 PF08553 VID27: VID27 cytoplas 98.3 0.00053 1.1E-08 76.9 28.6 145 351-498 492-646 (794)
320 cd00216 PQQ_DH Dehydrogenases 98.3 0.00069 1.5E-08 73.8 29.0 237 310-557 111-435 (488)
321 KOG2066 Vacuolar assembly/sort 98.3 2.3E-05 5E-10 84.8 16.7 186 340-546 39-233 (846)
322 KOG1008 Uncharacterized conser 98.3 4.7E-07 1E-11 95.1 3.8 198 296-499 56-275 (783)
323 PF15492 Nbas_N: Neuroblastoma 98.3 0.00022 4.8E-09 69.0 21.6 186 299-502 46-262 (282)
324 KOG2114 Vacuolar assembly/sort 98.3 0.00012 2.6E-09 79.9 21.7 207 347-560 30-258 (933)
325 PF00780 CNH: CNH domain; Int 98.2 0.0022 4.7E-08 64.3 28.2 230 309-558 7-267 (275)
326 PF06433 Me-amine-dh_H: Methyl 98.2 0.0013 2.8E-08 66.3 25.5 258 319-587 17-318 (342)
327 PRK02888 nitrous-oxide reducta 98.2 0.00069 1.5E-08 73.4 24.4 153 404-559 213-427 (635)
328 KOG0882 Cyclophilin-related pe 98.1 1.6E-05 3.4E-10 80.6 10.7 213 338-554 7-239 (558)
329 KOG3617 WD40 and TPR repeat-co 98.1 5.3E-05 1.1E-09 82.1 14.9 254 299-569 62-366 (1416)
330 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0027 5.9E-08 60.6 24.4 185 305-497 19-205 (354)
331 PF03178 CPSF_A: CPSF A subuni 98.1 0.00077 1.7E-08 69.4 23.2 215 362-585 2-261 (321)
332 COG3391 Uncharacterized conser 98.1 0.0078 1.7E-07 63.4 30.7 262 298-568 32-308 (381)
333 KOG1645 RING-finger-containing 98.1 9E-05 2E-09 74.3 14.9 83 289-373 186-269 (463)
334 PRK02888 nitrous-oxide reducta 98.1 0.00041 9E-09 75.1 20.4 182 304-500 200-405 (635)
335 PF08596 Lgl_C: Lethal giant l 98.0 0.0017 3.6E-08 68.3 24.3 235 298-536 3-326 (395)
336 PF11768 DUF3312: Protein of u 98.0 0.0012 2.6E-08 69.9 23.0 89 451-546 239-329 (545)
337 PF14583 Pectate_lyase22: Olig 98.0 0.02 4.4E-07 58.9 31.0 274 303-586 42-378 (386)
338 KOG1008 Uncharacterized conser 98.0 6E-06 1.3E-10 87.0 4.9 203 341-546 57-275 (783)
339 PF14727 PHTB1_N: PTHB1 N-term 98.0 0.028 6E-07 59.2 32.1 274 306-585 34-356 (418)
340 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.012 2.6E-07 64.6 30.2 192 309-504 69-338 (527)
341 COG5170 CDC55 Serine/threonine 98.0 4.1E-05 8.8E-10 74.2 9.2 235 339-587 25-307 (460)
342 KOG1920 IkappaB kinase complex 97.9 0.0016 3.5E-08 74.0 22.5 233 340-586 68-319 (1265)
343 COG3391 Uncharacterized conser 97.9 0.025 5.4E-07 59.6 30.4 248 321-577 13-270 (381)
344 COG0823 TolB Periplasmic compo 97.9 0.0016 3.5E-08 69.1 21.3 228 330-568 182-423 (425)
345 PF11768 DUF3312: Protein of u 97.9 0.00061 1.3E-08 72.1 17.7 122 374-500 198-330 (545)
346 PF04053 Coatomer_WDAD: Coatom 97.9 0.0041 8.9E-08 66.3 23.8 224 292-546 28-262 (443)
347 PF04841 Vps16_N: Vps16, N-ter 97.8 0.041 9E-07 58.5 29.3 167 320-499 62-246 (410)
348 KOG3621 WD40 repeat-containing 97.7 0.00022 4.8E-09 76.4 11.4 141 427-567 34-179 (726)
349 PF03178 CPSF_A: CPSF A subuni 97.7 0.014 3E-07 60.1 23.8 214 320-542 3-261 (321)
350 PF04841 Vps16_N: Vps16, N-ter 97.7 0.021 4.5E-07 60.8 25.5 191 363-568 62-269 (410)
351 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.02 4.4E-07 59.6 25.1 245 318-579 22-301 (353)
352 PF06977 SdiA-regulated: SdiA- 97.7 0.027 5.8E-07 55.2 23.9 216 290-543 15-247 (248)
353 KOG3617 WD40 and TPR repeat-co 97.7 0.00071 1.5E-08 73.7 13.6 109 344-456 19-131 (1416)
354 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.049 1.1E-06 59.8 28.2 240 310-558 121-502 (527)
355 PF02897 Peptidase_S9_N: Proly 97.6 0.043 9.3E-07 58.5 27.3 243 298-551 125-409 (414)
356 PF08596 Lgl_C: Lethal giant l 97.6 0.014 3.1E-07 61.3 22.9 230 342-586 3-287 (395)
357 PF04053 Coatomer_WDAD: Coatom 97.6 0.039 8.4E-07 58.9 26.1 222 338-586 30-259 (443)
358 COG3490 Uncharacterized protei 97.6 0.044 9.5E-07 53.3 23.2 209 342-555 69-319 (366)
359 PF05096 Glu_cyclase_2: Glutam 97.6 0.068 1.5E-06 52.3 25.1 198 373-577 34-249 (264)
360 PF08553 VID27: VID27 cytoplas 97.6 0.004 8.7E-08 70.0 18.7 136 403-545 501-646 (794)
361 COG3386 Gluconolactonase [Carb 97.6 0.042 9.1E-07 55.7 24.5 224 347-578 31-274 (307)
362 KOG2395 Protein involved in va 97.5 0.004 8.8E-08 65.0 16.8 145 351-498 344-499 (644)
363 KOG3621 WD40 repeat-containing 97.5 0.013 2.7E-07 63.4 20.2 141 299-445 36-188 (726)
364 smart00320 WD40 WD40 repeats. 97.5 0.00032 7E-09 45.6 5.6 38 287-325 3-40 (40)
365 KOG2444 WD40 repeat protein [G 97.5 0.00021 4.6E-09 67.0 5.9 142 439-587 31-175 (238)
366 PF00930 DPPIV_N: Dipeptidyl p 97.4 0.17 3.8E-06 52.7 27.6 261 296-579 42-348 (353)
367 COG3386 Gluconolactonase [Carb 97.4 0.11 2.4E-06 52.7 24.7 217 303-535 31-274 (307)
368 KOG1897 Damage-specific DNA bi 97.4 0.099 2.1E-06 58.9 25.5 280 296-586 530-853 (1096)
369 PF14870 PSII_BNR: Photosynthe 97.3 0.22 4.7E-06 50.3 26.9 272 296-586 16-301 (302)
370 smart00320 WD40 WD40 repeats. 97.3 0.00077 1.7E-08 43.7 6.1 39 548-587 2-40 (40)
371 KOG4499 Ca2+-binding protein R 97.3 0.066 1.4E-06 50.7 20.0 211 354-568 29-263 (310)
372 KOG1897 Damage-specific DNA bi 97.3 0.22 4.8E-06 56.2 26.9 276 299-585 586-894 (1096)
373 KOG4640 Anaphase-promoting com 97.3 0.0014 3E-08 69.7 9.7 79 297-378 21-100 (665)
374 PF06977 SdiA-regulated: SdiA- 97.2 0.076 1.6E-06 52.1 21.2 197 384-586 24-247 (248)
375 PF14783 BBS2_Mid: Ciliary BBS 97.2 0.029 6.4E-07 47.1 15.3 104 299-409 2-109 (111)
376 KOG2395 Protein involved in va 97.2 0.015 3.3E-07 60.8 16.1 141 397-545 347-499 (644)
377 PF02897 Peptidase_S9_N: Proly 97.2 0.28 6.1E-06 52.3 26.8 230 343-577 126-389 (414)
378 KOG2444 WD40 repeat protein [G 97.1 0.0011 2.3E-08 62.3 6.3 143 311-456 32-177 (238)
379 KOG2079 Vacuolar assembly/sort 97.0 0.005 1.1E-07 69.3 11.2 109 297-409 90-200 (1206)
380 PF00780 CNH: CNH domain; Int 97.0 0.36 7.9E-06 48.1 24.2 218 350-587 5-253 (275)
381 PF14783 BBS2_Mid: Ciliary BBS 97.0 0.061 1.3E-06 45.2 14.9 100 343-451 2-109 (111)
382 PF05096 Glu_cyclase_2: Glutam 97.0 0.41 8.9E-06 46.9 22.9 198 332-535 35-249 (264)
383 PHA02713 hypothetical protein; 96.9 0.13 2.8E-06 57.0 22.1 198 351-559 303-546 (557)
384 COG0823 TolB Periplasmic compo 96.9 0.049 1.1E-06 57.9 17.5 186 295-489 191-389 (425)
385 TIGR03074 PQQ_membr_DH membran 96.8 0.38 8.1E-06 55.0 24.8 236 309-555 194-486 (764)
386 PF14655 RAB3GAP2_N: Rab3 GTPa 96.7 0.76 1.7E-05 48.5 24.1 42 518-559 309-350 (415)
387 KOG4640 Anaphase-promoting com 96.7 0.0079 1.7E-07 64.2 9.2 94 382-479 21-115 (665)
388 PRK13616 lipoprotein LpqB; Pro 96.7 0.19 4.1E-06 55.8 20.5 189 338-542 347-564 (591)
389 PHA02713 hypothetical protein; 96.6 0.17 3.7E-06 56.1 19.9 181 397-586 305-530 (557)
390 KOG4441 Proteins containing BT 96.5 0.3 6.6E-06 54.1 21.1 229 309-548 285-548 (571)
391 PRK13616 lipoprotein LpqB; Pro 96.5 0.11 2.4E-06 57.7 17.4 175 405-586 328-522 (591)
392 KOG2079 Vacuolar assembly/sort 96.5 0.0092 2E-07 67.3 8.8 103 475-582 93-198 (1206)
393 PF05694 SBP56: 56kDa selenium 96.5 0.46 1E-05 49.6 20.3 152 305-458 138-344 (461)
394 KOG1916 Nuclear protein, conta 96.4 0.00053 1.1E-08 75.3 -1.5 199 317-551 109-328 (1283)
395 PF05694 SBP56: 56kDa selenium 96.4 1.6 3.5E-05 45.7 24.8 195 351-548 86-344 (461)
396 PF15390 DUF4613: Domain of un 96.3 1.3 2.9E-05 47.7 22.9 146 297-455 20-185 (671)
397 KOG4441 Proteins containing BT 96.2 0.23 4.9E-06 55.1 17.6 216 351-582 284-534 (571)
398 PF14655 RAB3GAP2_N: Rab3 GTPa 96.2 2.2 4.7E-05 45.1 25.3 88 469-557 307-409 (415)
399 PF14583 Pectate_lyase22: Olig 96.1 1.8 4E-05 44.8 22.2 224 346-580 41-303 (386)
400 COG3204 Uncharacterized protei 96.0 0.32 7E-06 47.9 15.6 161 423-583 82-257 (316)
401 COG3204 Uncharacterized protei 96.0 1.5 3.2E-05 43.4 19.8 197 300-501 46-265 (316)
402 PHA03098 kelch-like protein; P 96.0 0.39 8.5E-06 53.1 18.4 182 309-500 295-512 (534)
403 TIGR03118 PEPCTERM_chp_1 conse 95.9 2.2 4.7E-05 42.5 24.6 228 298-526 24-307 (336)
404 PRK10115 protease 2; Provision 95.8 4.8 0.0001 45.9 32.6 241 298-549 128-397 (686)
405 PF10647 Gmad1: Lipoprotein Lp 95.8 0.75 1.6E-05 45.4 17.5 145 428-579 25-185 (253)
406 PF14727 PHTB1_N: PTHB1 N-term 95.5 4.1 8.9E-05 43.2 27.2 145 352-498 37-203 (418)
407 PRK13684 Ycf48-like protein; P 95.2 4.5 9.7E-05 41.8 31.3 272 296-587 45-329 (334)
408 TIGR03074 PQQ_membr_DH membran 95.2 4.2 9E-05 46.7 22.9 114 352-466 194-354 (764)
409 COG1520 FOG: WD40-like repeat 95.1 5.1 0.00011 41.9 23.0 197 351-557 68-279 (370)
410 KOG3630 Nuclear pore complex, 95.1 0.23 5E-06 56.8 12.2 143 342-487 102-261 (1405)
411 PHA03098 kelch-like protein; P 95.1 1.2 2.7E-05 49.1 18.4 190 351-549 294-514 (534)
412 PHA02790 Kelch-like protein; P 95.0 2 4.3E-05 46.8 19.4 180 309-499 272-470 (480)
413 PRK10115 protease 2; Provision 95.0 8.4 0.00018 44.0 27.8 112 341-455 127-254 (686)
414 COG3490 Uncharacterized protei 95.0 4 8.6E-05 40.2 19.7 160 371-534 57-243 (366)
415 PF10168 Nup88: Nuclear pore c 94.9 3.8 8.2E-05 46.6 21.4 76 341-416 85-181 (717)
416 PF12894 Apc4_WD40: Anaphase-p 94.8 0.093 2E-06 37.0 5.4 34 516-550 11-44 (47)
417 COG5276 Uncharacterized conser 94.5 5.6 0.00012 39.4 22.5 151 339-500 85-242 (370)
418 COG5167 VID27 Protein involved 94.5 0.46 1E-05 50.0 11.7 145 351-499 478-632 (776)
419 PF14761 HPS3_N: Hermansky-Pud 94.3 3.2 7E-05 39.3 16.0 142 399-545 31-213 (215)
420 COG3823 Glutamine cyclotransfe 94.2 3 6.5E-05 39.2 15.3 176 397-578 57-248 (262)
421 PF12234 Rav1p_C: RAVE protein 94.2 1.3 2.9E-05 49.0 15.3 99 398-498 43-155 (631)
422 PF12894 Apc4_WD40: Anaphase-p 94.2 0.15 3.2E-06 36.0 5.2 34 340-374 11-44 (47)
423 TIGR02604 Piru_Ver_Nterm putat 94.0 2.1 4.5E-05 44.9 16.1 146 427-578 14-202 (367)
424 KOG1916 Nuclear protein, conta 93.8 0.18 4E-06 56.2 7.8 159 423-587 129-321 (1283)
425 PF10168 Nup88: Nuclear pore c 93.7 10 0.00022 43.3 21.6 74 427-501 85-181 (717)
426 KOG2280 Vacuolar assembly/sort 93.7 2.8 6E-05 46.5 16.3 195 296-503 43-250 (829)
427 KOG3630 Nuclear pore complex, 93.6 0.58 1.3E-05 53.7 11.3 127 404-533 122-260 (1405)
428 TIGR03548 mutarot_permut cycli 93.5 10 0.00022 38.8 20.2 104 397-501 74-196 (323)
429 PF08728 CRT10: CRT10; InterP 93.4 1.5 3.1E-05 49.2 13.8 117 470-587 101-244 (717)
430 PF15390 DUF4613: Domain of un 93.3 3.1 6.7E-05 45.0 15.5 154 340-500 19-187 (671)
431 PHA02790 Kelch-like protein; P 93.3 6.8 0.00015 42.7 19.0 142 351-500 271-424 (480)
432 PF07995 GSDH: Glucose / Sorbo 93.2 12 0.00025 38.6 23.9 233 299-541 4-330 (331)
433 PF08728 CRT10: CRT10; InterP 92.9 4.4 9.5E-05 45.5 16.7 102 396-498 114-245 (717)
434 PF12234 Rav1p_C: RAVE protein 92.9 2.6 5.6E-05 46.8 14.8 117 426-545 29-155 (631)
435 COG5276 Uncharacterized conser 92.6 12 0.00025 37.3 27.5 273 296-587 86-367 (370)
436 PF14781 BBS2_N: Ciliary BBSom 92.4 5.7 0.00012 34.7 13.3 118 300-420 2-131 (136)
437 PF14870 PSII_BNR: Photosynthe 92.4 14 0.0003 37.4 25.7 230 339-584 15-256 (302)
438 KOG2280 Vacuolar assembly/sort 92.3 4.9 0.00011 44.7 15.6 194 362-568 64-269 (829)
439 PF03022 MRJP: Major royal jel 92.3 14 0.0003 37.3 19.1 170 363-534 35-253 (287)
440 KOG2063 Vacuolar assembly/sort 92.1 14 0.0003 42.8 19.6 235 309-555 26-277 (877)
441 COG5167 VID27 Protein involved 91.9 3.1 6.7E-05 44.1 12.9 140 397-545 481-631 (776)
442 COG3823 Glutamine cyclotransfe 91.7 12 0.00025 35.4 15.1 172 309-487 56-247 (262)
443 TIGR02604 Piru_Ver_Nterm putat 91.4 20 0.00044 37.4 25.8 144 297-447 14-204 (367)
444 PF10313 DUF2415: Uncharacteri 91.3 0.96 2.1E-05 31.0 5.8 31 297-327 1-33 (43)
445 KOG4460 Nuclear pore complex, 90.9 5.9 0.00013 42.2 13.9 96 342-461 105-203 (741)
446 COG1520 FOG: WD40-like repeat 90.8 23 0.0005 37.0 29.3 191 310-506 69-275 (370)
447 PLN02193 nitrile-specifier pro 90.8 28 0.0006 37.8 23.5 193 351-550 175-414 (470)
448 PF13449 Phytase-like: Esteras 90.6 16 0.00034 37.6 17.2 149 425-575 18-230 (326)
449 PF07995 GSDH: Glucose / Sorbo 90.1 25 0.00054 36.2 26.7 236 342-584 3-330 (331)
450 PF07250 Glyoxal_oxid_N: Glyox 90.1 7 0.00015 38.2 13.0 147 408-556 48-207 (243)
451 PF14761 HPS3_N: Hermansky-Pud 89.8 19 0.00041 34.3 17.0 129 310-458 29-165 (215)
452 KOG2377 Uncharacterized conser 89.7 9.2 0.0002 40.1 13.9 142 429-575 25-169 (657)
453 PF10433 MMS1_N: Mono-function 89.6 36 0.00078 37.3 27.9 248 308-568 221-503 (504)
454 PLN02153 epithiospecifier prot 89.5 28 0.00061 35.9 24.0 147 351-501 85-286 (341)
455 KOG4659 Uncharacterized conser 89.5 39 0.00084 40.3 19.7 82 292-377 343-434 (1899)
456 TIGR03547 muta_rot_YjhT mutatr 89.2 29 0.00063 35.7 21.3 51 397-447 65-128 (346)
457 KOG2247 WD40 repeat-containing 88.7 0.077 1.7E-06 55.4 -1.6 148 425-582 33-181 (615)
458 TIGR03606 non_repeat_PQQ dehyd 88.4 17 0.00036 39.1 15.5 116 422-537 25-166 (454)
459 PF10313 DUF2415: Uncharacteri 87.9 2 4.4E-05 29.4 5.4 31 341-371 1-34 (43)
460 PF02333 Phytase: Phytase; In 87.7 39 0.00084 35.3 22.5 196 386-587 58-288 (381)
461 PLN00033 photosystem II stabil 87.7 41 0.00089 35.6 33.1 151 429-586 241-396 (398)
462 PF07569 Hira: TUP1-like enhan 87.6 3.1 6.8E-05 40.0 8.8 72 476-548 17-97 (219)
463 PF03022 MRJP: Major royal jel 87.5 34 0.00073 34.4 18.8 161 406-568 34-243 (287)
464 KOG1900 Nuclear pore complex, 87.4 15 0.00032 43.7 15.1 170 282-457 65-273 (1311)
465 KOG4499 Ca2+-binding protein R 87.4 29 0.00062 33.5 17.9 136 340-479 108-263 (310)
466 KOG1898 Splicing factor 3b, su 87.3 33 0.00071 39.9 17.3 108 311-418 551-677 (1205)
467 TIGR03548 mutarot_permut cycli 87.3 37 0.0008 34.6 21.5 106 351-460 72-198 (323)
468 PF10647 Gmad1: Lipoprotein Lp 87.0 33 0.00071 33.8 21.9 150 384-539 26-188 (253)
469 COG4590 ABC-type uncharacteriz 86.9 3.8 8.3E-05 42.8 9.2 169 330-502 210-389 (733)
470 PF14781 BBS2_N: Ciliary BBSom 86.8 21 0.00045 31.3 13.4 114 432-554 4-133 (136)
471 TIGR02276 beta_rpt_yvtn 40-res 86.0 4.2 9.1E-05 27.2 6.5 40 350-389 1-41 (42)
472 PF13449 Phytase-like: Esteras 85.6 46 0.001 34.1 17.9 161 296-487 19-232 (326)
473 smart00036 CNH Domain found in 85.0 47 0.001 33.7 28.6 234 310-556 14-280 (302)
474 KOG1900 Nuclear pore complex, 84.9 6.2 0.00013 46.6 10.6 137 446-587 97-270 (1311)
475 PF07569 Hira: TUP1-like enhan 84.6 6.6 0.00014 37.8 9.3 65 434-499 18-95 (219)
476 PF10214 Rrn6: RNA polymerase 84.5 87 0.0019 36.4 26.8 158 338-500 77-277 (765)
477 PF10214 Rrn6: RNA polymerase 84.4 88 0.0019 36.3 26.1 117 426-547 145-277 (765)
478 COG5290 IkappaB kinase complex 84.3 11 0.00024 42.2 11.5 92 343-438 249-348 (1243)
479 KOG4460 Nuclear pore complex, 84.2 7.3 0.00016 41.6 9.8 71 517-587 104-196 (741)
480 PF11635 Med16: Mediator compl 83.7 79 0.0017 36.6 19.1 71 470-541 260-345 (753)
481 PF08801 Nucleoporin_N: Nup133 83.7 15 0.00033 39.1 12.8 31 470-500 190-220 (422)
482 PLN02153 epithiospecifier prot 83.7 56 0.0012 33.6 23.1 64 397-460 87-171 (341)
483 PF08801 Nucleoporin_N: Nup133 83.6 29 0.00062 37.0 14.8 31 517-547 190-220 (422)
484 KOG1898 Splicing factor 3b, su 83.2 77 0.0017 37.1 17.8 174 363-545 854-1047(1205)
485 PF11715 Nup160: Nucleoporin N 83.2 6.5 0.00014 43.6 9.9 72 309-380 158-258 (547)
486 COG3292 Predicted periplasmic 83.1 76 0.0017 34.6 21.0 197 341-547 290-492 (671)
487 PRK13684 Ycf48-like protein; P 82.6 62 0.0014 33.3 24.6 140 399-544 186-329 (334)
488 KOG2377 Uncharacterized conser 82.3 72 0.0016 33.8 16.7 140 316-458 40-187 (657)
489 PF11635 Med16: Mediator compl 82.3 1E+02 0.0023 35.6 20.5 69 426-494 259-345 (753)
490 PF05935 Arylsulfotrans: Aryls 82.2 81 0.0018 34.3 20.7 151 404-558 126-313 (477)
491 KOG3616 Selective LIM binding 82.0 3.9 8.4E-05 45.2 7.0 67 297-368 15-81 (1636)
492 PF02333 Phytase: Phytase; In 81.6 73 0.0016 33.4 25.3 200 351-554 67-299 (381)
493 PF05935 Arylsulfotrans: Aryls 81.5 86 0.0019 34.1 27.5 140 318-466 127-311 (477)
494 TIGR03118 PEPCTERM_chp_1 conse 81.4 63 0.0014 32.5 25.8 235 342-580 24-324 (336)
495 PRK14131 N-acetylneuraminic ac 80.9 77 0.0017 33.2 20.6 51 397-447 86-149 (376)
496 PF11715 Nup160: Nucleoporin N 80.8 7.1 0.00015 43.3 9.1 77 479-555 156-257 (547)
497 KOG2247 WD40 repeat-containing 80.5 0.26 5.6E-06 51.6 -2.2 139 344-486 38-176 (615)
498 PRK14131 N-acetylneuraminic ac 80.3 80 0.0017 33.0 23.0 39 407-446 190-230 (376)
499 TIGR02276 beta_rpt_yvtn 40-res 80.0 8.8 0.00019 25.5 6.1 40 526-566 1-41 (42)
500 KOG1983 Tomosyn and related SN 80.0 65 0.0014 38.5 16.8 29 297-326 36-64 (993)
No 1
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.2e-87 Score=661.45 Aligned_cols=460 Identities=50% Similarity=0.916 Sum_probs=429.8
Q ss_pred ccccCCCCceEEeCcchhhhcCCCCCCCCCCCCccccccccccccceeeeeecCchhhhhhcceeeeeeeeeCCCCCccc
Q 007855 65 SRPIDPSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYI 144 (587)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 144 (587)
...+||+.++|.|||+|++|++|+.||+|||++.++ .++|
T Consensus 42 v~~~dp~~ke~~~np~~~~l~~p~~Gp~n~f~s~q~----------------------------------------~~~v 81 (503)
T KOG0282|consen 42 VAIVDPKTKEIKSNPKFDQLFKPESGPVNHFKSEQQ----------------------------------------TRFV 81 (503)
T ss_pred ccccCCcchhhccCCchhhhcccccCCCCcchhhhh----------------------------------------hhhc
Confidence 467999999999999999999999999999996643 5689
Q ss_pred CChhHhhhccCcceeecchhHHHHHHHHHhhhhcCCCCCccccCCCCCCCCCCccccccccCCCCCCCccCccccccHHH
Q 007855 145 GDLDALEKNNAISVYNIRQNEQKKRKLERKQEAEGGDGMAVDVDPAEVNNPATDSWLMKNRKSPWAGKKEGVQTELTEEQ 224 (587)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~~~~~~ee~ 224 (587)
|+.+.++++.|.++|+..++.+++||+++. ++.+.+++|.|||..|.+ |..+.++++++
T Consensus 82 g~~~~ae~~~g~t~fe~~~k~~~~Rk~~~~-------------dd~~~idg~~gpWsr~~d--------E~~vak~~~~~ 140 (503)
T KOG0282|consen 82 GDVKKAEAEKGVSLFESKKKGGEQRKRVGN-------------DDSADIDGYSGPWSRYVD--------EKTVAKPTPEE 140 (503)
T ss_pred cchhhhhcccCceeecccccccchhhhccC-------------CChhhccCCCCCcccccc--------cccccCCCcch
Confidence 999999999999999998877766665532 344568999999999987 55566778888
Q ss_pred HHHHHHHHhhhhccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccC--CCcccCCCceEEEEcCCCCCeEEE
Q 007855 225 KKYAEEYAKKKEDKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAA--NDHCYIPKRLVHTWSGHTKGVSAI 302 (587)
Q Consensus 225 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~--~~~~~~p~~~i~tl~gH~~~V~~l 302 (587)
++.+++...++++++......+...++.+.+|+++..|||+|+|+++|.+.... ...||+|++++++|.||+.+|+++
T Consensus 141 ~~~~de~~~k~~e~~~~~e~~~~~~ee~s~~h~k~~~dyq~r~~l~~P~dv~vnlR~~rc~~Pkk~~~~~~gH~kgvsai 220 (503)
T KOG0282|consen 141 QKQMDEIVKKRQEKKKEKEDSEHMAEESSTLHGKSLFDYQGRSYLQKPKDVGVNLREERCYLPKKLSHNLSGHTKGVSAI 220 (503)
T ss_pred hhhhhhhhhhhhhhccccccccccccccccccccchhhccccccccCCcccCCccccceeeccHhheeeccCCccccchh
Confidence 888888888888777666666667889999999999999999999999997554 469999999999999999999999
Q ss_pred EEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC
Q 007855 303 RFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK 382 (587)
Q Consensus 303 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~ 382 (587)
.|+|..+++|+||++|+.|+||+++..+.++++|.+|..+|.+++|+++|..|+|+|+|+.|++||+++|+++..|..+.
T Consensus 221 ~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~ 300 (503)
T KOG0282|consen 221 QWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK 300 (503)
T ss_pred hhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC
Confidence 99996699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEE
Q 007855 383 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK 462 (587)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 462 (587)
.++|+.+.|++ .++|++|+.|+.|+.||++++++++++..|.+.|..|.|.++|++|+++++|++|+||+.+.+..++
T Consensus 301 ~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik 378 (503)
T KOG0282|consen 301 VPTCVKFHPDN--QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIK 378 (503)
T ss_pred CceeeecCCCC--CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccch
Confidence 99999999987 5899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 463 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 463 ~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
.+....+..++++..+|+++++++.+.|+.|.+|.+....++...+.+.||...++.+.+.|||||++|++|+.+|.+++
T Consensus 379 ~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~ 458 (503)
T KOG0282|consen 379 NIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNF 458 (503)
T ss_pred hhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 543 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 543 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
||+++.+++..+++|.++|+.+.|||...+.|||||+||.|+|||
T Consensus 459 wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 459 WDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred eechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999999999999999999999997
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.4e-44 Score=344.87 Aligned_cols=324 Identities=23% Similarity=0.423 Sum_probs=283.2
Q ss_pred cCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeC
Q 007855 238 KGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 317 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~ 317 (587)
.|+.+.+....+.+++...++++.|.+.|.|.... ..++++.+||...|.||+|+|+ |..||||+.
T Consensus 112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-------------eTp~~t~KgH~~WVlcvawsPD-gk~iASG~~ 177 (480)
T KOG0271|consen 112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-------------ETPLFTCKGHKNWVLCVAWSPD-GKKIASGSK 177 (480)
T ss_pred CCCCCcEEEEEecCCCceEEecCCCceEEeeccCC-------------CCcceeecCCccEEEEEEECCC-cchhhcccc
Confidence 35555566666777888899999999999995543 3467899999999999999999 999999999
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEec-----CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEcc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNP 391 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-----dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~ 391 (587)
||+|++||....+...+.+.+|...|++++|.| ..++|++++.||.|+|||+..+.++..+..+.. +.|++|--
T Consensus 178 dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG 257 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG 257 (480)
T ss_pred CCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC
Confidence 999999999656677789999999999999976 577999999999999999999999988876543 34555532
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEe-----------cC-----------------------
Q 007855 392 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-----------DN----------------------- 437 (587)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s-----------p~----------------------- 437 (587)
..++++|+.|++|++|+...|.+...+++|...|+.|+++ |.
T Consensus 258 ----~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~ 333 (480)
T KOG0271|consen 258 ----EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLK 333 (480)
T ss_pred ----CceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhc
Confidence 3689999999999999999999999999999999999887 22
Q ss_pred --CCEEEEEECCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccc
Q 007855 438 --NRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 514 (587)
Q Consensus 438 --~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 514 (587)
+.+|++|++|.++.+|+-.... ++... ..|..-|..+.|+|+++++|+++.|..|++|+.++++.+ ..|.||.
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rm-tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l---asfRGHv 409 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRM-TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL---ASFRGHV 409 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhh-hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh---hhhhhcc
Confidence 2459999999999999976544 44444 469999999999999999999999999999999998655 6678885
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 515 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 515 ~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
..|..++||.|.++|++|+.|.+|++|++++.++...+.+|...|.++.|+| ++..+++||.|..+++|
T Consensus 410 --~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwsp-DG~rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 410 --AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSP-DGQRVASGGKDKVLRLW 478 (480)
T ss_pred --ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecC-CCceeecCCCceEEEee
Confidence 5678899999999999999999999999999999999999999999999999 78899999999999999
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.4e-44 Score=343.22 Aligned_cols=293 Identities=23% Similarity=0.417 Sum_probs=257.8
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
.++..++.||.++|.|++|+|+ +..|+||+.|.++++||+ .+..++.+.++|...|.|++|+|||+.|++|+.||+|+
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~-g~~l~tGsGD~TvR~WD~-~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~ 182 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPT-GSRLVTGSGDTTVRLWDL-DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIR 182 (480)
T ss_pred ceeccccCCCCCcEEEEEecCC-CceEEecCCCceEEeecc-CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEE
Confidence 4567789999999999999998 999999999999999999 78999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeecCCc--ceEEEEccCC--CCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 366 YWDTETGQVIRTFSTGKI--PYVVKLNPDD--DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~~~--~~~~~~~~~~--~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
+||..+|+++..--.++. +.+++|.|.. ....+|++++.||.|+|||+..+.++..+.+|..+|+|+.|--+| +|
T Consensus 183 lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-li 261 (480)
T KOG0271|consen 183 LWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LI 261 (480)
T ss_pred EecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eE
Confidence 999999988765544444 4455665532 233589999999999999999999999999999999999997554 89
Q ss_pred EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEe-----------CCCC-------------------------EEE
Q 007855 442 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH-----------PNTN-------------------------WLA 485 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~s-----------p~g~-------------------------~l~ 485 (587)
+++|.|++|++|+...+.++..+. +|.+.|+.++++ |.++ .|+
T Consensus 262 ySgS~DrtIkvw~a~dG~~~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlV 340 (480)
T KOG0271|consen 262 YSGSQDRTIKVWRALDGKLCRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLV 340 (480)
T ss_pred EecCCCceEEEEEccchhHHHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeE
Confidence 999999999999999888877664 588889888876 3333 499
Q ss_pred EEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEE
Q 007855 486 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 565 (587)
Q Consensus 486 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~ 565 (587)
+|+.|.++.+|+..... .++....+| ...|..+.||||++|||+++-|..|++|+.++|+.+.+|++|-+.|..++
T Consensus 341 SgsDd~tlflW~p~~~k--kpi~rmtgH--q~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqva 416 (480)
T KOG0271|consen 341 SGSDDFTLFLWNPFKSK--KPITRMTGH--QALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVA 416 (480)
T ss_pred EecCCceEEEecccccc--cchhhhhch--hhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEE
Confidence 99999999999865332 234566777 56788999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCEEEEEECCCcEEEcC
Q 007855 566 WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 566 ~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|+. +.++|++|+.|.+|+|||
T Consensus 417 wsa-DsRLlVS~SkDsTLKvw~ 437 (480)
T KOG0271|consen 417 WSA-DSRLLVSGSKDSTLKVWD 437 (480)
T ss_pred ecc-CccEEEEcCCCceEEEEE
Confidence 999 888999999999999997
No 4
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.9e-41 Score=330.16 Aligned_cols=287 Identities=24% Similarity=0.395 Sum_probs=263.2
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC--CCeEEEEeCCCeEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKY 366 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d--g~~l~s~s~Dg~I~v 366 (587)
...-.|-+.+|..+.|+++ +..|+|||.+|.++||+. .....+.+|.+|...|.++.|+|. +..|+||+.||++++
T Consensus 168 ~~SQ~gd~rPis~~~fS~d-s~~laT~swsG~~kvW~~-~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvkl 245 (459)
T KOG0272|consen 168 VCSQVGDTRPISGCSFSRD-SKHLATGSWSGLVKVWSV-PQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKL 245 (459)
T ss_pred hhhhccCCCcceeeEeecC-CCeEEEeecCCceeEeec-CCcceeEEEeccccceeeEEEccCCCccceeeeccCCceee
Confidence 3444577889999999999 999999999999999999 777999999999999999999995 679999999999999
Q ss_pred EECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 367 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
|++++..++..+..+ ..+..++|+|++ .+|.+++.|.+-++||++++..+....+|...|.+|+|.++|..+++|+
T Consensus 246 w~~~~e~~l~~l~gH~~RVs~VafHPsG---~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGG 322 (459)
T KOG0272|consen 246 WKLSQETPLQDLEGHLARVSRVAFHPSG---KFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGG 322 (459)
T ss_pred eccCCCcchhhhhcchhhheeeeecCCC---ceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccC
Confidence 999998888888755 345567888865 5899999999999999999998888899999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
.|..-+|||++++.++..+.. |...|.++.|+|+|..||+|+.|++++|||++.... ...+.+| ...|+.+.|+
T Consensus 323 lD~~~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~---ly~ipAH--~nlVS~Vk~~ 396 (459)
T KOG0272|consen 323 LDSLGRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE---LYTIPAH--SNLVSQVKYS 396 (459)
T ss_pred ccchhheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCCcEEEeeeccccc---ceecccc--cchhhheEec
Confidence 999999999999999988864 999999999999999999999999999999987655 3556667 5678889999
Q ss_pred C-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 526 P-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 526 p-dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
| .|.+|++++.|++++||...++.+++.+.+|.+.|.++.+++ ++..++|++.|.+|++|.
T Consensus 397 p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~-d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 397 PQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISP-DSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEecc-CCceEEEeccCceeeecc
Confidence 9 889999999999999999999999999999999999999999 788999999999999994
No 5
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.1e-39 Score=303.84 Aligned_cols=290 Identities=23% Similarity=0.370 Sum_probs=257.0
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
+.-++|+||.+.|.++.|+++ .++|+|+|.||.+.|||. -+....+.+.-....|..++|+|.|+++++|+.|....|
T Consensus 46 ~~rr~LkGH~~Ki~~~~ws~D-sr~ivSaSqDGklIvWDs-~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 46 RTRRTLKGHLNKIYAMDWSTD-SRRIVSASQDGKLIVWDS-FTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSI 123 (343)
T ss_pred eeEEEecccccceeeeEecCC-cCeEEeeccCCeEEEEEc-ccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEE
Confidence 344899999999999999999 999999999999999999 566666777778899999999999999999999999999
Q ss_pred EECCCC--c---EEEEeecCCcce--EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-CC
Q 007855 367 WDTETG--Q---VIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-NN 438 (587)
Q Consensus 367 Wd~~t~--~---~i~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~~ 438 (587)
|++.+. + .+.+.-.++..+ ++.|..+ +.|++++.|.+..+||+.+++.++.|.+|.+.|.+|.++| ++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD----~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ 199 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD----NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDG 199 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcCC----CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCC
Confidence 999855 2 233333344444 4444442 4699999999999999999999999999999999999999 99
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
+.|++|+.|+..+|||++.+.+.+.+. .|...|.+++|.|+|.-|++|+.|++.++||++....+.. +........
T Consensus 200 ntFvSg~cD~~aklWD~R~~~c~qtF~-ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~---ys~~~~~~g 275 (343)
T KOG0286|consen 200 NTFVSGGCDKSAKLWDVRSGQCVQTFE-GHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV---YSHDSIICG 275 (343)
T ss_pred CeEEecccccceeeeeccCcceeEeec-ccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee---eccCcccCC
Confidence 999999999999999999998888875 5999999999999999999999999999999998766533 334444577
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|++++||..|++|++|..|..+.+||.-.++.+..+.+|.+.|.++..+| ++..|+||++|.+||||.
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~-DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP-DGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECC-CCcEEEecchhHheeecC
Confidence 89999999999999999999999999999999999999999999999999 888999999999999995
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-37 Score=292.31 Aligned_cols=293 Identities=24% Similarity=0.472 Sum_probs=259.5
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
++..+.||.+.|+.+.|+|+ |.+||||+.|..|.||+++...+-...+.+|+++|..+.|.+|++.|++++.|.+|+.|
T Consensus 39 p~m~l~gh~geI~~~~F~P~-gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPD-GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW 117 (338)
T ss_pred hhhhcCCCcceEEEEEECCC-CCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence 34567899999999999997 99999999999999999988888888999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 368 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
|+++|++++.+..+.... -.+.|...+..++.+|+.|+++++||+++...++.+. ...+++++.|...+..+++|+-|
T Consensus 118 D~~tG~~~rk~k~h~~~v-Ns~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggId 195 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFV-NSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGID 195 (338)
T ss_pred ecccceeeehhcccccee-eecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeecccc
Confidence 999999999998665433 3333666677889999999999999999998888774 45789999999999999999999
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc-cceecccccc--cceEEEEE
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGHIVA--GYACQVNF 524 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~--~~i~~l~~ 524 (587)
+.|++||++.......+. +|...|+.+..+|+|.++.+-++|+++++||++......+ ...+.++... .....++|
T Consensus 196 n~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~csw 274 (338)
T KOG0265|consen 196 NDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSW 274 (338)
T ss_pred CceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeec
Confidence 999999999888776654 6999999999999999999999999999999986544433 5566666543 33456899
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 525 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
||++.++.+|+.|..+++||..+...+..+.+|.+.|+++.|+| ...+|.+|+.|.+|.+
T Consensus 275 sp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp-~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 275 SPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP-TEPIILSCSSDKTIYL 334 (338)
T ss_pred cCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC-CCcEEEEeccCceeEe
Confidence 99999999999999999999999999999999999999999999 6779999999999976
No 7
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=4.7e-36 Score=300.53 Aligned_cols=339 Identities=22% Similarity=0.333 Sum_probs=283.2
Q ss_pred hccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEE
Q 007855 236 EDKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA 315 (587)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sg 315 (587)
-+.+.+.++...+.......+.+..|.++ +...+++..+.++.-+|+|.-.+++.|.+-|.|++|+|+ |.+++|+
T Consensus 134 ~DSG~SvGei~GhSr~ins~~~KpsRPfR----i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPD-G~~Fat~ 208 (603)
T KOG0318|consen 134 WDSGNSVGEITGHSRRINSVDFKPSRPFR----IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPD-GSRFATA 208 (603)
T ss_pred ecCCCccceeeccceeEeeeeccCCCceE----EEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCC-CCeEEEe
Confidence 34555666666666666777777777775 667778888888888999999999999999999999999 9999999
Q ss_pred eCCCeEEEEecCCCCeeeEEEc---ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc--eEEEEc
Q 007855 316 GMDTKVKIWDVFNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLN 390 (587)
Q Consensus 316 s~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~~~~~ 390 (587)
+.||+|.|||- .+++.+..+. +|.+.|.+|+|+||++.|+++|.|.+++|||+.+.++++++..+... ..+.+.
T Consensus 209 gsDgki~iyDG-ktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~l 287 (603)
T KOG0318|consen 209 GSDGKIYIYDG-KTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCL 287 (603)
T ss_pred cCCccEEEEcC-CCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEE
Confidence 99999999999 7899988888 89999999999999999999999999999999999999999887662 333334
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEE--------
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK-------- 462 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~-------- 462 (587)
+.. ..|++.+.+|.|.+++.........+.+|...|++++.++++.+|++|+.||.|.-|+..++..-+
T Consensus 288 Wqk---d~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~n 364 (603)
T KOG0318|consen 288 WQK---DHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTN 364 (603)
T ss_pred EeC---CeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccc
Confidence 432 358999999999999999999999999999999999999999999999999999999975421110
Q ss_pred -----------------------Eee-------------------------------------------------cCCCc
Q 007855 463 -----------------------YIS-------------------------------------------------EPHMH 470 (587)
Q Consensus 463 -----------------------~~~-------------------------------------------------~~~~~ 470 (587)
.+. .+...
T Consensus 365 qI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y 444 (603)
T KOG0318|consen 365 QIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGY 444 (603)
T ss_pred eEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeecccc
Confidence 000 00122
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
...+++++|++..+++|+.|+.|+||.+....... ......| .+.+++++||||+.||++|+..+.+.+||+.+.+.
T Consensus 445 ~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~e-e~~~~~h--~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~ 521 (603)
T KOG0318|consen 445 ESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKE-EAKLLEH--RAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV 521 (603)
T ss_pred ccceEEEcCCCCEEEEecccceEEEEEecCCcccc-eeeeecc--cCCceEEEECCCCcEEEEeccCCcEEEEEcccCce
Confidence 35678899999999999999999999998754432 2223334 57899999999999999999999999999998876
Q ss_pred EEE-EecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 551 FRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 551 ~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
... +--|...|.+++|+| +..+||||+.|-.|.||+
T Consensus 522 ~~~~w~FHtakI~~~aWsP-~n~~vATGSlDt~Viiys 558 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAWSP-NNKLVATGSLDTNVIIYS 558 (603)
T ss_pred ecceeeeeeeeEEEEEeCC-CceEEEeccccceEEEEE
Confidence 433 345999999999999 778999999999999995
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.6e-37 Score=302.49 Aligned_cols=278 Identities=24% Similarity=0.403 Sum_probs=245.2
Q ss_pred CCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccC-CCcEEEEEeCCCeEE
Q 007855 244 EKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVK 322 (587)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~-~g~~L~sgs~Dg~I~ 322 (587)
+-.-.+...+...+++.-+...+.|-.+. ...+++|.||+..|.++.|+|. ++..||||+.||+|+
T Consensus 178 is~~~fS~ds~~laT~swsG~~kvW~~~~-------------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 178 ISGCSFSRDSKHLATGSWSGLVKVWSVPQ-------------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred ceeeEeecCCCeEEEeecCCceeEeecCC-------------cceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 33344556666667777777777775543 3578999999999999999998 477999999999999
Q ss_pred EEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcEEEE
Q 007855 323 IWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 323 iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~s 401 (587)
+|++ ....++..+.+|...|..++|+|+|++|+|+|+|.+-++||++++..+..... ...+..++|.+++ .++++
T Consensus 245 lw~~-~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DG---SL~~t 320 (459)
T KOG0272|consen 245 LWKL-SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDG---SLAAT 320 (459)
T ss_pred eecc-CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCC---ceeec
Confidence 9999 67789999999999999999999999999999999999999999987665554 3456788888866 58999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-C
Q 007855 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-N 480 (587)
Q Consensus 402 g~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~ 480 (587)
|+.|..-+|||++++.++..+.+|..+|.++.|+|+|..|+|||.|++++|||++....+..+. .|..-|+.++|+| .
T Consensus 321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~ 399 (459)
T KOG0272|consen 321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQE 399 (459)
T ss_pred cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccC
Confidence 9999999999999999999999999999999999999999999999999999999988866664 6999999999999 7
Q ss_pred CCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 481 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 481 g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
|.+|++++.|++++||...+..++ +.+.|| .+.|.++++++++.++++++.|.++++|.
T Consensus 400 g~fL~TasyD~t~kiWs~~~~~~~---ksLaGH--e~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 400 GYFLVTASYDNTVKIWSTRTWSPL---KSLAGH--EGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred CeEEEEcccCcceeeecCCCcccc---hhhcCC--ccceEEEEeccCCceEEEeccCceeeecc
Confidence 899999999999999998876554 677888 67799999999999999999999999995
No 9
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6e-37 Score=293.89 Aligned_cols=292 Identities=26% Similarity=0.468 Sum_probs=260.7
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 360 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~ 360 (587)
..-.|.++.+.+.||.+.|.||++.|. ..+|++|+.|++|+|||+ .++++..++.||-..|+.+++|+-..||++++.
T Consensus 136 eWHapwKl~rVi~gHlgWVr~vavdP~-n~wf~tgs~DrtikIwDl-atg~LkltltGhi~~vr~vavS~rHpYlFs~ge 213 (460)
T KOG0285|consen 136 EWHAPWKLYRVISGHLGWVRSVAVDPG-NEWFATGSADRTIKIWDL-ATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGE 213 (460)
T ss_pred cccCcceehhhhhhccceEEEEeeCCC-ceeEEecCCCceeEEEEc-ccCeEEEeecchhheeeeeeecccCceEEEecC
Confidence 445788999999999999999999999 899999999999999999 899999999999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC
Q 007855 361 DKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR 439 (587)
Q Consensus 361 Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~ 439 (587)
|+.|+.||++..+.++.+..+ +.++|+.++|.. ..|++|+.|..+++||+++...+..+.+|..+|.++.+.|-+.
T Consensus 214 dk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl---dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dp 290 (460)
T KOG0285|consen 214 DKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL---DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDP 290 (460)
T ss_pred CCeeEEEechhhhhHHHhccccceeEEEeccccc---eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCC
Confidence 999999999999999888655 456788888765 4799999999999999999999999999999999999999999
Q ss_pred EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccce
Q 007855 440 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i 519 (587)
.+++||.|++|++||++.++....+. .|...+.+++.+|....|++++.|+ |+-|++..+..+.. +.+| ...+
T Consensus 291 qvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~n---lsgh--~~ii 363 (460)
T KOG0285|consen 291 QVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQN---LSGH--NAII 363 (460)
T ss_pred ceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhc---cccc--ccee
Confidence 99999999999999999999888776 4889999999999999999998776 89999987765533 5566 4667
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--------CCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 520 ~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
..++...|| ++++|+.+|.|.+||+++|..++.++. ....|.+.+|.. .+..|+||..|.+|++|
T Consensus 364 ntl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk-tg~rlit~eadKtIk~~ 436 (460)
T KOG0285|consen 364 NTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK-TGSRLITGEADKTIKMY 436 (460)
T ss_pred eeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc-cCceEEeccCCcceEEE
Confidence 778887776 888999999999999999987766632 234688889988 78899999999999999
No 10
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.1e-37 Score=299.11 Aligned_cols=295 Identities=22% Similarity=0.405 Sum_probs=260.6
Q ss_pred ccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEecCCCeEEEEe
Q 007855 282 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTAS 359 (587)
Q Consensus 282 ~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~dg~~l~s~s 359 (587)
..+|.+-.+++..|+..|.-+.||++ |++|||++.|.+..||.+.... ++..++.+|..+|.-|.||||.++|++|+
T Consensus 210 ~qip~qt~qil~~htdEVWfl~FS~n-GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg 288 (519)
T KOG0293|consen 210 LQIPSQTWQILQDHTDEVWFLQFSHN-GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACG 288 (519)
T ss_pred ccCCchhhhhHhhCCCcEEEEEEcCC-CeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecC
Confidence 34778888999999999999999999 9999999999999999984433 56788999999999999999999999999
Q ss_pred CCCeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC-CCCeeEEEEec
Q 007855 360 YDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVD 436 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h-~~~I~~i~~sp 436 (587)
.|..+.+||+.+|.+...+..+ ..+.+++|.|++. .+++|+.|+.|..||+.... ....++- ...|.+++..+
T Consensus 289 ~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~---~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~ 364 (519)
T KOG0293|consen 289 FDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF---RFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITY 364 (519)
T ss_pred chHheeeccCCcchhhhhcccCcCCCcceeEEccCCc---eeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcC
Confidence 9999999999999999888766 6677899999775 49999999999999997543 3333332 35689999999
Q ss_pred CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccc
Q 007855 437 NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
||+++++.+.|..|++++.........+. ...+|++++++.+++++++.-.+..|++||+..... ...+.||...
T Consensus 365 Dgk~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l---v~kY~Ghkq~ 439 (519)
T KOG0293|consen 365 DGKYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL---VRKYFGHKQG 439 (519)
T ss_pred CCcEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH---HHHhhccccc
Confidence 99999999999999999998877765553 566899999999999999999999999999985433 4667888888
Q ss_pred cceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 517 GYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 517 ~~i~~l~~sp-dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.++..-||-- +..++++|+.|+.|+||+..+++++..+.+|...|++++|+|.+..++|++|+||+||||
T Consensus 440 ~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIW 510 (519)
T KOG0293|consen 440 HFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIW 510 (519)
T ss_pred ceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEe
Confidence 8888888865 448999999999999999999999999999999999999999999999999999999999
No 11
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=275.95 Aligned_cols=289 Identities=24% Similarity=0.399 Sum_probs=246.0
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC----CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN----SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~----~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
.+..++.+|++.|+.++..+.+...|++++.|.+|.+|++.. .|.+++.+.||+..|..+..+++|+++++++.|+
T Consensus 6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~ 85 (315)
T KOG0279|consen 6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG 85 (315)
T ss_pred eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence 345689999999999999998889999999999999999832 3567899999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-CCCCeeEEEEecC--C
Q 007855 363 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDN--N 438 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-h~~~I~~i~~sp~--~ 438 (587)
++++||+.+++..+.|..+. .+.++++++++ ..+++|+.|.+|.+|++........... +.+.|+|++|+|+ .
T Consensus 86 ~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn---~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~ 162 (315)
T KOG0279|consen 86 TLRLWDLATGESTRRFVGHTKDVLSVAFSTDN---RQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESN 162 (315)
T ss_pred eEEEEEecCCcEEEEEEecCCceEEEEecCCC---ceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCC
Confidence 99999999999998887654 45688888866 4699999999999999976654443333 3789999999998 7
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
.+|++++.|++|++||+++.+....+. +|.+.++.++++|+|..+++|+.||.+.+||++.+..+..+. + ...
T Consensus 163 p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~----a--~~~ 235 (315)
T KOG0279|consen 163 PIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE----A--FDI 235 (315)
T ss_pred cEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc----C--CCe
Confidence 899999999999999999887766654 699999999999999999999999999999999876643322 2 366
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec----C-----CCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----H-----EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~----h-----~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.+++|+|+.-+|+.+... .|+|||+.+..++..++. . .-.+.+++|++ ++..|++|-.|+.|++|.
T Consensus 236 v~sl~fspnrywL~~at~~-sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~-dG~tLf~g~td~~irv~q 311 (315)
T KOG0279|consen 236 VNSLCFSPNRYWLCAATAT-SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSA-DGQTLFAGYTDNVIRVWQ 311 (315)
T ss_pred EeeEEecCCceeEeeccCC-ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcC-CCcEEEeeecCCcEEEEE
Confidence 8889999998777766655 599999999888776642 2 23578899999 788999999999999994
No 12
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.2e-35 Score=291.27 Aligned_cols=321 Identities=21% Similarity=0.390 Sum_probs=271.1
Q ss_pred ccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcC----CCCCeEEEEEccCCCcEEEEEeCCCeEEEE
Q 007855 249 VEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSG----HTKGVSAIRFFPKYGHLILSAGMDTKVKIW 324 (587)
Q Consensus 249 ~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~g----H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iW 324 (587)
.+....++...+.|...|.|..+...-+-... +-.|.-..+.+ -+..|++|+|+.+ |.+||+|+.||.++||
T Consensus 187 nP~~~~llasg~~~s~ari~~l~e~~~~~~~q---~~lrh~~~~~~~s~~~nkdVT~L~Wn~~-G~~LatG~~~G~~riw 262 (524)
T KOG0273|consen 187 NPLRDGLLASGSGDSTARIWNLLENSNIGSTQ---LVLRHCIREGGKSVPSNKDVTSLDWNND-GTLLATGSEDGEARIW 262 (524)
T ss_pred CchhhhhhhccCCccceeeeeehhhccccchh---hhhhhhhhhhcccCCccCCcceEEecCC-CCeEEEeecCcEEEEE
Confidence 34444467788899999999887522111000 00010011112 3468999999999 9999999999999999
Q ss_pred ecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc-eEEEEccCCCCCcEEEEEe
Q 007855 325 DVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGM 403 (587)
Q Consensus 325 d~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~ 403 (587)
+. .+.++.+|..|.++|.+|.|+..|++|++++.|+++.+||..++...+.|..+..+ .-+.|..+. -|++++
T Consensus 263 ~~--~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~----~F~ts~ 336 (524)
T KOG0273|consen 263 NK--DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND----EFATSS 336 (524)
T ss_pred ec--CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc----eEeecC
Confidence 97 89999999999999999999999999999999999999999999999999988877 447776654 499999
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC--
Q 007855 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-- 481 (587)
Q Consensus 404 ~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g-- 481 (587)
.|+.|+++-+....++.++.+|.++|++|.|.|.+.+|+++|+|++++||..........+. .|...|..+.|+|.|
T Consensus 337 td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~-~Hskei~t~~wsp~g~v 415 (524)
T KOG0273|consen 337 TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQ-AHSKEIYTIKWSPTGPV 415 (524)
T ss_pred CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhh-hhccceeeEeecCCCCc
Confidence 99999999999999999999999999999999999999999999999999998887777764 588899999999954
Q ss_pred -------CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 482 -------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 482 -------~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
..+++++.|++|++||+..+.++. .+..| ..+|.+++|||+|+|||+|+.||.|++|+.+++++++..
T Consensus 416 ~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---~f~kH--~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~ 490 (524)
T KOG0273|consen 416 TSNPNMNLMLASASFDSTVKLWDVESGVPIH---TLMKH--QEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSY 490 (524)
T ss_pred cCCCcCCceEEEeecCCeEEEEEccCCceeE---eeccC--CCceEEEEecCCCcEEEecCCCCeeEeccccchheeEee
Confidence 479999999999999999887664 35555 567889999999999999999999999999999999998
Q ss_pred ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 555 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 555 ~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+. +.|..++|+. .+.+|..+-.||.+++-|
T Consensus 491 ~~~-~~Ifel~Wn~-~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 491 QGT-GGIFELCWNA-AGDKLGACASDGSVCVLD 521 (524)
T ss_pred cCC-CeEEEEEEcC-CCCEEEEEecCCCceEEE
Confidence 854 4599999999 668899999999998754
No 13
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.3e-36 Score=289.08 Aligned_cols=290 Identities=27% Similarity=0.454 Sum_probs=261.7
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
+.+.+.+.||..+|+.+-|+|. -.++++++.|++|++||. .++++.+.++||.+.|.+|+|+..|++|++++.|=.++
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~-~~~v~~as~d~tikv~D~-~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~ 175 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPS-EALVVSASEDATIKVFDT-ETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAK 175 (406)
T ss_pred CCchhhhhccccceeeeeeccC-ceEEEEecCCceEEEEEc-cchhhhhhhhccccceeEEEEecCccEEEecCCccchh
Confidence 3566778899999999999999 889999999999999999 89999999999999999999999999999999999999
Q ss_pred EEECCC-CcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEE
Q 007855 366 YWDTET-GQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 366 vWd~~t-~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s 443 (587)
+||..+ .++++... ..+.+.++.+.|.+ .++++++.|.+|+.|++.++-++.++.+|...|..+..+.||.++++
T Consensus 176 LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g---d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As 252 (406)
T KOG0295|consen 176 LWDFDTFFRCIKSLIGHEHGVSSVFFLPLG---DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIAS 252 (406)
T ss_pred heeHHHHHHHHHHhcCcccceeeEEEEecC---CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEe
Confidence 999987 34454443 44566788888875 58999999999999999999999999999999999999999999999
Q ss_pred EECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCC---------------CCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 444 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN---------------TNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~---------------g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
++.|.+|++|-+.+..+...+. .|..+|-+++|.|. +.++.+++.|++|++||+.++.++ .
T Consensus 253 ~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL---~ 328 (406)
T KOG0295|consen 253 CSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL---F 328 (406)
T ss_pred cCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---E
Confidence 9999999999999987665554 48899999999772 358999999999999999998665 5
Q ss_pred eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+.+| ..+|+.++|+|.|+||+++..|++|++||++++++...+.+|...|+++.|+. ...+++||+-|.++++|.
T Consensus 329 tL~gh--dnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~-~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 329 TLVGH--DNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred EEecc--cceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC-CCceEEeccccceeeeee
Confidence 56777 67899999999999999999999999999999999999999999999999998 666999999999999994
No 14
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.3e-35 Score=268.52 Aligned_cols=270 Identities=20% Similarity=0.406 Sum_probs=240.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc--EEEEeecC-Ccce
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ--VIRTFSTG-KIPY 385 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~--~i~~~~~~-~~~~ 385 (587)
.-+|+|+|.|.+|++|.. .+|.|.++++.....|..+...|+++.|++++. ..|++||+.++. ++.+|..+ ..+.
T Consensus 10 ~viLvsA~YDhTIRfWqa-~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kNVt 87 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQA-LTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKNVT 87 (311)
T ss_pred ceEEEeccCcceeeeeeh-hcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCceE
Confidence 458999999999999999 899999999988899999999999999999886 689999999875 57778766 6677
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEee
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~ 465 (587)
.+.|..++ +.+++|+.||+++|||++...+.+.|+ |..+|+++..+|+...|++|..+|.|++||+....+...+.
T Consensus 88 aVgF~~dg---rWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li 163 (311)
T KOG0315|consen 88 AVGFQCDG---RWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI 163 (311)
T ss_pred EEEEeecC---eEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC
Confidence 88888755 689999999999999999977666664 77999999999999999999999999999999988777776
Q ss_pred cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce---eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
.....+|.++.+.|+|.+|+.+...|..++|++-+.. .+.++..++.| .+++..+.+|||++||++++.|.+++|
T Consensus 164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~i 241 (311)
T KOG0315|consen 164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKI 241 (311)
T ss_pred CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEE
Confidence 6677899999999999999999999999999986532 34445556666 688999999999999999999999999
Q ss_pred EeCCCC-eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 543 WDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 543 wd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|+..+. +.-..+.+|..-+..++|+. ++.+|+|++.|+.+++||
T Consensus 242 wn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~ 286 (311)
T KOG0315|consen 242 WNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWD 286 (311)
T ss_pred EecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecc
Confidence 999988 77778899999999999999 888999999999999997
No 15
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.3e-34 Score=282.90 Aligned_cols=287 Identities=30% Similarity=0.571 Sum_probs=252.2
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
++++++|.+.|++++|+|+ +.+|++++.||.|++|++ ..+.....+..|...+..+.|++++++|++++.+|.|++|+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~-~~~l~~~~~~g~i~i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~ 79 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPD-GKLLATGSGDGTIKVWDL-ETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWD 79 (289)
T ss_pred chHhcccCCCEEEEEEcCC-CCEEEEeecCcEEEEEEe-eCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEE
Confidence 4577899999999999999 899999999999999999 66777888889999999999999999999999999999999
Q ss_pred CCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 369 TETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 369 ~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+.+++.+..+..+. .+.++.+.+. ..++++++.++.|.+||+.+++....+..|...|.++.|+|++.++++++.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 156 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD---GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD 156 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC---CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCC
Confidence 99988777776544 5566777765 3577777779999999999999999998999999999999998888888889
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCC
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 527 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 527 (587)
+.|++||++....+..+. .+...+.++.|+|+++.|++++.++.|++||+.....+.. +..+ ...+.+++|+|+
T Consensus 157 ~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~---~~~~--~~~i~~~~~~~~ 230 (289)
T cd00200 157 GTIKLWDLRTGKCVATLT-GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT---LRGH--ENGVNSVAFSPD 230 (289)
T ss_pred CcEEEEEccccccceeEe-cCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecc---hhhc--CCceEEEEEcCC
Confidence 999999999877776665 4777899999999999999999999999999987554433 2233 347888999999
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 528 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 528 g~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.++++++.+|.|++|++.+++.+..+..|...|.++.|+| ++.+|++++.||.|++||
T Consensus 231 ~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 231 GYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSP-DGKRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEECC-CCCEEEEecCCCeEEecC
Confidence 99999998899999999999999999999999999999999 678999999999999997
No 16
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-34 Score=263.22 Aligned_cols=288 Identities=25% Similarity=0.429 Sum_probs=254.6
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~ 363 (587)
+|.+..+.+..|.++|.+++|+-+ |++.++|+.|.+|+||+. ..+.+++++.+|...|.+++.+.|...|++|+.|+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~d-GnY~ltcGsdrtvrLWNp-~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVD-GNYCLTCGSDRTVRLWNP-LRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred CcchhceeecccccceEEEEEccC-CCEEEEcCCCceEEeecc-cccceeeeecCCCceeeeccccccccccccCCCCce
Confidence 566778899999999999999999 999999999999999999 899999999999999999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--cEEEEEccCCCCeeEEEEecCCCE
Q 007855 364 IKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
|.+||+.+|+.++.|..+. .+..+.|+... .++++|+.|.++++||.++. ++++.+......|.+|... +..
T Consensus 83 v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees---SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~he 157 (307)
T KOG0316|consen 83 VQVWDVNTGKVDRRFRGHLAQVNTVRFNEES---SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHE 157 (307)
T ss_pred EEEEEcccCeeeeecccccceeeEEEecCcc---eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccE
Confidence 9999999999999998654 44566776543 58999999999999999875 6889998899999999996 568
Q ss_pred EEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 441 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
|++|+.||+++.||++.+...... ...+|++++|+++++.+++++.|++|++.|-.+++.+ ..+.||.+..+-.
T Consensus 158 IvaGS~DGtvRtydiR~G~l~sDy---~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL---~sYkGhkn~eykl 231 (307)
T KOG0316|consen 158 IVAGSVDGTVRTYDIRKGTLSSDY---FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL---KSYKGHKNMEYKL 231 (307)
T ss_pred EEeeccCCcEEEEEeecceeehhh---cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH---HHhcccccceeee
Confidence 999999999999999998876544 5679999999999999999999999999999888654 6788898888888
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCC-EEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV-CIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~-V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.++++.....+++|+.||.|++||+.....+..+..|... |+++.++|.. ..|+++... .+..|
T Consensus 232 dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~-~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 232 DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM-DDFITATGH-GDLFW 296 (307)
T ss_pred eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc-cceeEecCC-ceece
Confidence 8999999999999999999999999999999999999887 8999999944 445555533 34444
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1e-33 Score=260.12 Aligned_cols=294 Identities=20% Similarity=0.362 Sum_probs=254.4
Q ss_pred ccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC
Q 007855 251 DKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG 330 (587)
Q Consensus 251 ~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~ 330 (587)
+...+++++++|.++|.|-+ ...++.++++.....|+.|...|+ +++||+++. -.|+|||+....
T Consensus 8 d~~viLvsA~YDhTIRfWqa-------------~tG~C~rTiqh~dsqVNrLeiTpd-k~~LAaa~~-qhvRlyD~~S~n 72 (311)
T KOG0315|consen 8 DDPVILVSAGYDHTIRFWQA-------------LTGICSRTIQHPDSQVNRLEITPD-KKDLAAAGN-QHVRLYDLNSNN 72 (311)
T ss_pred CCceEEEeccCcceeeeeeh-------------hcCeEEEEEecCccceeeEEEcCC-cchhhhccC-CeeEEEEccCCC
Confidence 35678899999999999844 346789999988899999999999 888888775 679999994433
Q ss_pred -eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 331 -KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 331 -~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
.++.+|.+|.+.|+.+.|..+|+++++||.||+++|||++...+.+.+.....+.++.++|+. ..|++|..+|.|+
T Consensus 73 p~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQ---teLis~dqsg~ir 149 (311)
T KOG0315|consen 73 PNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQ---TELISGDQSGNIR 149 (311)
T ss_pred CCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCc---ceEEeecCCCcEE
Confidence 378999999999999999999999999999999999999998888889888888889988865 4699999999999
Q ss_pred EEeCCCCcEEEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe------EEEEeecCCCcceeEEEEeCCCC
Q 007855 410 QWDMNTKEITQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHPNTN 482 (587)
Q Consensus 410 iwD~~t~~~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~------~~~~~~~~~~~~i~~i~~sp~g~ 482 (587)
+||+....+...+. .....|.+++..|+|.+++.+..-|.+++|++-... ++..+ ..|...+..+.++|+++
T Consensus 150 vWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~-~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 150 VWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKF-QAHNGHILRCLLSPDVK 228 (311)
T ss_pred EEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhhe-ecccceEEEEEECCCCc
Confidence 99999887665543 345789999999999999999999999999986532 22222 35888899999999999
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEE
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI 562 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~ 562 (587)
+|++++.|.+++||++.+. +.....+.+| ..++..++||.||.||++|+.|+.+++|++..++.+....+|.....
T Consensus 229 ~lat~ssdktv~iwn~~~~--~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~v 304 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDF--FKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAV 304 (311)
T ss_pred EEEeecCCceEEEEecCCc--eeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccccE
Confidence 9999999999999999876 3334566777 57899999999999999999999999999999999999999998877
Q ss_pred EEEEc
Q 007855 563 GCEWH 567 (587)
Q Consensus 563 ~v~~s 567 (587)
|++.+
T Consensus 305 c~~ln 309 (311)
T KOG0315|consen 305 CVALN 309 (311)
T ss_pred EEEee
Confidence 77764
No 18
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-34 Score=266.78 Aligned_cols=280 Identities=21% Similarity=0.387 Sum_probs=237.0
Q ss_pred ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCee
Q 007855 253 STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC 332 (587)
Q Consensus 253 ~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 332 (587)
..+..+..+|...-.|.....+. .-..+++.|.||+..|+.+..+++ ++++++++.|+++++||+ ..++.
T Consensus 28 ~~~l~sasrDk~ii~W~L~~dd~--------~~G~~~r~~~GHsH~v~dv~~s~d-g~~alS~swD~~lrlWDl-~~g~~ 97 (315)
T KOG0279|consen 28 SDILVSASRDKTIIVWKLTSDDI--------KYGVPVRRLTGHSHFVSDVVLSSD-GNFALSASWDGTLRLWDL-ATGES 97 (315)
T ss_pred CceEEEcccceEEEEEEeccCcc--------ccCceeeeeeccceEecceEEccC-CceEEeccccceEEEEEe-cCCcE
Confidence 45567888898888887766532 224568899999999999999999 999999999999999999 78899
Q ss_pred eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec--CCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 333 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 333 ~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.+.|.+|...|.+++|++|.+.+++|+.|++|++|++-.......... ..-+.|++|+|... ..+|++++.|+.|++
T Consensus 98 t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~-~p~Ivs~s~DktvKv 176 (315)
T KOG0279|consen 98 TRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNES-NPIIVSASWDKTVKV 176 (315)
T ss_pred EEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCC-CcEEEEccCCceEEE
Confidence 999999999999999999999999999999999999976554444433 34466888998753 468999999999999
Q ss_pred EeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC
Q 007855 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 490 (587)
Q Consensus 411 wD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d 490 (587)
||+++-+....+.+|.+.++.++++|||..+++|+.||.+.+||++.++.+..+ .+...|.+++|+|+.-+|+.+. +
T Consensus 177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl--~a~~~v~sl~fspnrywL~~at-~ 253 (315)
T KOG0279|consen 177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL--EAFDIVNSLCFSPNRYWLCAAT-A 253 (315)
T ss_pred EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec--cCCCeEeeEEecCCceeEeecc-C
Confidence 999999999999999999999999999999999999999999999999987766 6889999999999987777665 4
Q ss_pred CeEEEEEcCCceeecccce-eccc---ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 491 NQILIYSTRERFQLNKKKR-FAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~-~~~~---~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
..|+|||+.++..+..+.. +.+. .......+++||++|..|++|..|+.|++|.+.
T Consensus 254 ~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 254 TSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred CceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 5599999988766543322 1111 113446679999999999999999999999864
No 19
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=6.2e-34 Score=274.37 Aligned_cols=286 Identities=21% Similarity=0.349 Sum_probs=244.8
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
+.+|..|+..|.+++.+|+ .++++||+.|..-.||++ .++..+..+.+|...|+++.|+.+|.+|++|..+|.|+||.
T Consensus 57 ~~tF~~H~~svFavsl~P~-~~l~aTGGgDD~AflW~~-~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPN-NNLVATGGGDDLAFLWDI-STGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred eeehhhcCCceEEEEeCCC-CceEEecCCCceEEEEEc-cCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence 5789999999999999996 999999999999999999 78889999999999999999999999999999999999999
Q ss_pred CCCCcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 369 TETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 369 ~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
..++.....+. ......-+.|+| ..++|++|+.||.|.+|.+.++...+.+.+|..++++-.|.|+|++++++..|
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp---~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHP---RAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred cccCceEEEeecccCceEEEEecc---cccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 99999888875 334444566666 55799999999999999999998999999999999999999999999999999
Q ss_pred CCEEEEECCCCeEEEEeecC--------------------------------------------------CCcc---eeE
Q 007855 448 KSLRVWEFGIPVVIKYISEP--------------------------------------------------HMHS---MPS 474 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~--------------------------------------------------~~~~---i~~ 474 (587)
|+|++|++.++.++..+... +... |-+
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 99999999888776665411 0011 112
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
+.++..-.+.|+|+.||+|.|||+..... +..-.| ...|+.+.|-+ ..+|++++.+|.|+.||.++|+++..+
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----R~~c~h--e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y 364 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTL----RHICEH--EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTY 364 (399)
T ss_pred cccccccchhhcccccceEEEEecccchh----heeccC--CCceEEEEEcC-cchheeeccCceEEeeeccccceEEEE
Confidence 22222335678999999999999875321 122223 35588899998 789999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 555 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 555 ~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+|...|.+++++| +.++++|+|.|++.+||+
T Consensus 365 ~GH~~~Il~f~ls~-~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 365 TGHQMGILDFALSP-QKRLVVTVSDDNTALVFE 396 (399)
T ss_pred ecCchheeEEEEcC-CCcEEEEecCCCeEEEEe
Confidence 99999999999999 788999999999999984
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.8e-33 Score=297.66 Aligned_cols=291 Identities=27% Similarity=0.556 Sum_probs=251.7
Q ss_pred eEEEEcCC-CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 288 LVHTWSGH-TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 288 ~i~tl~gH-~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
+..++.+| ...|+|+.|+++ |.+|++++.++.|++|+. .... .++.+.+|...|++++|+|++.++++++.|++|
T Consensus 150 ~~~~~~~~~~~sv~~~~fs~~-g~~l~~~~~~~~i~~~~~-~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~ti 227 (456)
T KOG0266|consen 150 LEQTLAGHECPSVTCVDFSPD-GRALAAASSDGLIRIWKL-EGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTL 227 (456)
T ss_pred eeeeecccccCceEEEEEcCC-CCeEEEccCCCcEEEeec-ccccchhhccccccccceeeeEECCCCcEEEEecCCceE
Confidence 35666665 789999999999 888999999999999999 5555 777888999999999999999999999999999
Q ss_pred EEEEC-CCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 365 KYWDT-ETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 365 ~vWd~-~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
+|||+ ..+..++++..+ ..+++++|++.+ +++++|+.|+.|++||+++++++..+.+|.+.|++++|+++++.|+
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g---~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~ 304 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG---NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLV 304 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCC---CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEE
Confidence 99999 555888888743 334566666644 7999999999999999999999999999999999999999999999
Q ss_pred EEECCCCEEEEECCCCe--EEEEeecCCCc-ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccc-cc
Q 007855 443 TSSDDKSLRVWEFGIPV--VIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA-GY 518 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~-~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~ 518 (587)
+++.|+.|+|||+.++. +...+...... ++.++.|+|++.+|++++.|+.+++|++...... ..+.+|... ..
T Consensus 305 s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~---~~~~~~~~~~~~ 381 (456)
T KOG0266|consen 305 SASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV---GTYTGHSNLVRC 381 (456)
T ss_pred EcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce---eeecccCCccee
Confidence 99999999999999998 45555543333 6999999999999999999999999999876554 445555443 23
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCCEEEEEEcCCCCCEEEEEE--CCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g--~DG~I~iWD 587 (587)
+.+..+++.+.++++|+.|+.|++|++.++..+..+.+| ...+..+.|+| ...++++++ .|+.|++|-
T Consensus 382 ~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~ 452 (456)
T KOG0266|consen 382 IFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWK 452 (456)
T ss_pred EecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEec
Confidence 444566889999999999999999999999999999999 88999999999 778999998 689999993
No 21
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-34 Score=281.76 Aligned_cols=291 Identities=19% Similarity=0.393 Sum_probs=249.1
Q ss_pred CCCceEEEE-cCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 284 IPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 284 ~p~~~i~tl-~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
++.+.+++- ..-..+|..|+|.|. |+.|++|+..|.+.||+. ..-..-..++.|..+|+++.|+++|.+++||+.+|
T Consensus 83 ~~tKf~h~s~NKvkc~V~~v~WtPe-GRRLltgs~SGEFtLWNg-~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG 160 (464)
T KOG0284|consen 83 FTTKFVHTSSNKVKCPVNVVRWTPE-GRRLLTGSQSGEFTLWNG-TSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGG 160 (464)
T ss_pred cccceEeccccccccceeeEEEcCC-CceeEeecccccEEEecC-ceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCc
Confidence 344445443 445568999999999 999999999999999998 44444445678999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEee-cC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 363 NIKYWDTETGQVIRTFS-TG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~-~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
.|++|+..-.. ++.+. .+ ..+.+++|+|.+ ..|++++.||.|+|||....+....+.+|.-.|.|+.|+|.-..
T Consensus 161 ~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnD---skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgL 236 (464)
T KOG0284|consen 161 MIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPND---SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGL 236 (464)
T ss_pred eEEecccchhh-hHHhhHhhhhhhheeccCCCC---ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccce
Confidence 99999986443 33333 33 567789999854 46999999999999999999888889999999999999999999
Q ss_pred EEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 441 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
|+++|.|..|++||.+++.++..+. .|...|..+.|+|++++|+++|.|..+++||+++. ..+..+++| ...++
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~H--kkdv~ 310 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGH--KKDVT 310 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcc--hhhhe
Confidence 9999999999999999999998875 49999999999999999999999999999999854 344667777 56788
Q ss_pred EEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEE-ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 521 QVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 521 ~l~~sp-dg~~L~sgs~dG~I~vwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++.|+| ...+|.+|+.||.|..|.+...+++..+ .+|.+.|++++|+| =+.+|++|+.|.++++|.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hP-lGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHP-LGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccc-cceeEeecCCCcceeeec
Confidence 999999 4567889999999999999866666555 47999999999999 678999999999999993
No 22
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3e-32 Score=283.17 Aligned_cols=271 Identities=22% Similarity=0.422 Sum_probs=228.2
Q ss_pred CCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE
Q 007855 279 NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358 (587)
Q Consensus 279 ~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~ 358 (587)
..|.......+...+||...|+|++++|+ |+++|+|+.||.|+|||. ..+-|+.+|..|+..|+.+.|+..|+.++++
T Consensus 333 lVweWqsEsYVlKQQgH~~~i~~l~YSpD-gq~iaTG~eDgKVKvWn~-~SgfC~vTFteHts~Vt~v~f~~~g~~llss 410 (893)
T KOG0291|consen 333 LVWEWQSESYVLKQQGHSDRITSLAYSPD-GQLIATGAEDGKVKVWNT-QSGFCFVTFTEHTSGVTAVQFTARGNVLLSS 410 (893)
T ss_pred EEEEeeccceeeeccccccceeeEEECCC-CcEEEeccCCCcEEEEec-cCceEEEEeccCCCceEEEEEEecCCEEEEe
Confidence 34555556667788899999999999999 999999999999999999 8999999999999999999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC-cEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 359 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
|.||+|+.||+......++|..+......++..+.. +.++++|+.|. .|.+|++++|+++..+.+|.++|.+++|+|.
T Consensus 411 SLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~s-GelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~ 489 (893)
T KOG0291|consen 411 SLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPS-GELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPD 489 (893)
T ss_pred ecCCeEEeeeecccceeeeecCCCceeeeEEEEcCC-CCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccc
Confidence 999999999999999999999888776555554432 35777777765 7999999999999999999999999999999
Q ss_pred CCEEEEEECCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce----e--
Q 007855 438 NRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----F-- 510 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~----~-- 510 (587)
+..|+++|.|.+|++||+-.. .....+ ...+.+..++|+|+|+.|++++.||+|.+||+....+...+.. .
T Consensus 490 ~~~LaS~SWDkTVRiW~if~s~~~vEtl--~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~g 567 (893)
T KOG0291|consen 490 GSLLASGSWDKTVRIWDIFSSSGTVETL--EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGG 567 (893)
T ss_pred cCeEEeccccceEEEEEeeccCceeeeE--eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhcccc
Confidence 999999999999999998544 233333 3667899999999999999999999999999876655422111 1
Q ss_pred ---------cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 511 ---------AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 511 ---------~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
.........+.+++|+||.+|++|+....|++|++.++-+++.+
T Consensus 568 R~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkf 620 (893)
T KOG0291|consen 568 RKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKF 620 (893)
T ss_pred ccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeE
Confidence 11112356788999999999999999999999998766554443
No 23
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.4e-32 Score=279.86 Aligned_cols=299 Identities=17% Similarity=0.363 Sum_probs=243.5
Q ss_pred ccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe-eeEEEcccCCceeeEEEecCCCeEEEEeC
Q 007855 282 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK-CMRTYMGHSKAVRDISFCNDGTKFLTASY 360 (587)
Q Consensus 282 ~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~l~s~s~ 360 (587)
.|.|+.+.+++.||-..|++|.|+.+ .++|++||.|.+++||.+..... ....+.+|...|..+-|..+...+++.+.
T Consensus 131 ~~~pFvl~r~~~g~fddi~si~Ws~D-Sr~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvsk 209 (893)
T KOG0291|consen 131 EFNPFVLHRTYLGHFDDITSIDWSDD-SRLLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSK 209 (893)
T ss_pred ccCcceEeeeecCCccceeEEEeccC-CceEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEec
Confidence 58899999999999999999999999 99999999999999999943322 35677899999999999999999999999
Q ss_pred CCeEEEEECCC-----------------------CcE-----EE----E--ee-cCCcceEEEEccCC------------
Q 007855 361 DKNIKYWDTET-----------------------GQV-----IR----T--FS-TGKIPYVVKLNPDD------------ 393 (587)
Q Consensus 361 Dg~I~vWd~~t-----------------------~~~-----i~----~--~~-~~~~~~~~~~~~~~------------ 393 (587)
||.|.+|.... ++. .. . +. ......+..+++..
T Consensus 210 dG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f 289 (893)
T KOG0291|consen 210 DGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEF 289 (893)
T ss_pred CceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCee
Confidence 99999997651 110 00 0 00 00111122222110
Q ss_pred ---------------------------CCCcEEEEEeCC-CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 394 ---------------------------DKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 394 ---------------------------~~~~~l~sg~~d-g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
..+..|+.|+.. |.+.+|+.++...+...++|...+++++++|||.++++|+
T Consensus 290 ~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~ 369 (893)
T KOG0291|consen 290 GLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA 369 (893)
T ss_pred EEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc
Confidence 112334444433 6777777777777777789999999999999999999999
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
+||.|+|||...+-++.++.+ |...|+.+.|+..|+.+++.|.||+|+.||+...... +.+.... .....+++..
T Consensus 370 eDgKVKvWn~~SgfC~vTFte-Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf---RTft~P~-p~QfscvavD 444 (893)
T KOG0291|consen 370 EDGKVKVWNTQSGFCFVTFTE-HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF---RTFTSPE-PIQFSCVAVD 444 (893)
T ss_pred CCCcEEEEeccCceEEEEecc-CCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee---eeecCCC-ceeeeEEEEc
Confidence 999999999999999999875 9999999999999999999999999999999765443 3444332 3445679999
Q ss_pred CCCCEEEEEcCCCc-EEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 526 PDGRFVMSGDGEGK-CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 526 pdg~~L~sgs~dG~-I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.|.++++|+.|.. |++|++++|+++-.+.+|.++|.+++|+| .++.|+|+++|.+||+||
T Consensus 445 ~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 445 PSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWD 506 (893)
T ss_pred CCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEE
Confidence 99999999998875 99999999999999999999999999999 778999999999999997
No 24
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.4e-32 Score=288.57 Aligned_cols=278 Identities=21% Similarity=0.409 Sum_probs=243.5
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC------------------------------CC
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN------------------------------SG 330 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------------------------------~~ 330 (587)
..-+|.-++.++..-...++|..|+++ +.+||.|..|..|++|.+.. ..
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSdd-ssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~ 441 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDD-SSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSS 441 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCC-cchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCC
Confidence 445677788888888889999999999 78999999999999999842 11
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
...+++.||.++|..+.|+|+.++|++||.|++||+|.+.+..++-.+..+.. ++.+.|+|. +.+|++++.|++-+
T Consensus 442 ~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~---GyYFatas~D~tAr 518 (707)
T KOG0263|consen 442 GTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPR---GYYFATASHDQTAR 518 (707)
T ss_pred ceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCC---ceEEEecCCCceee
Confidence 23456789999999999999999999999999999999999999999886544 457788875 57999999999999
Q ss_pred EEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 410 QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 410 iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
+|........+.+.+|.+.|.|+.|+|+..++++||.|.+|++||+.++..++.+. +|..+|.+++|+|+|.+|++|+.
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~-GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFT-GHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEec-CCCCceEEEEEcCCCceEeeccc
Confidence 99999999999999999999999999999999999999999999999999988775 69999999999999999999999
Q ss_pred CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--------------------
Q 007855 490 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-------------------- 549 (587)
Q Consensus 490 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~-------------------- 549 (587)
||.|.+||+.++..+ ..+.+| .+.|.++.||.+|..|++|+.|..|++||+....
T Consensus 598 d~~I~iWDl~~~~~v---~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 672 (707)
T KOG0263|consen 598 DGLIKIWDLANGSLV---KQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENN 672 (707)
T ss_pred CCcEEEEEcCCCcch---hhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCC
Confidence 999999999987655 556677 6889999999999999999999999999985321
Q ss_pred ----eEEEEecCCCCEEEEEEcC
Q 007855 550 ----VFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 550 ----~~~~l~~h~~~V~~v~~sp 568 (587)
++..+..-..+|.++.|..
T Consensus 673 ~~~~llgs~~tK~tpv~~l~Ftr 695 (707)
T KOG0263|consen 673 ASSLLLGSFYTKNTPVVGLHFTR 695 (707)
T ss_pred CCcceeeeeeecCceEEEEEEec
Confidence 3445555566888888886
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=8.8e-32 Score=266.89 Aligned_cols=292 Identities=23% Similarity=0.386 Sum_probs=245.7
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-CCeeeE--EEc----------ccCCceeeEEEe
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMR--TYM----------GHSKAVRDISFC 349 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~--~~~----------~h~~~V~~l~fs 349 (587)
-+|...+..+. |...|.+.+|+|-...+|++|+.|.+.++|++.. ...+.. .++ .....|++++|+
T Consensus 166 ~I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn 244 (524)
T KOG0273|consen 166 EIPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN 244 (524)
T ss_pred cccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec
Confidence 46666777777 9999999999998555999999999999999943 111111 011 134679999999
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC
Q 007855 350 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA 428 (587)
Q Consensus 350 ~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~ 428 (587)
.+|..|++|+.||.++||+.. |..+.++..+ .++..+.|.- .+++|++++.|+++.+||..++...+.+.-|..+
T Consensus 245 ~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~ 320 (524)
T KOG0273|consen 245 NDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAP 320 (524)
T ss_pred CCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccEEEEeccCceEEEeeeeccCC
Confidence 999999999999999999975 5556666544 4445666665 3479999999999999999999999999999988
Q ss_pred eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
-..+.|..+ ..|++++.|+.|+|+.+....+++.+.. |.+.|.++.|.|.+.+|+++|.|++++||+....... .
T Consensus 321 ~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~G-H~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~---~ 395 (524)
T KOG0273|consen 321 ALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIG-HHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV---H 395 (524)
T ss_pred ccceEEecC-ceEeecCCCceEEEEEecCCCcceeeec-ccCceEEEEECCCCceEEEecCCCeeEeeecCCCcch---h
Confidence 888999854 5799999999999999999999988876 9999999999999999999999999999998765444 3
Q ss_pred eecccccccceEEEEEcCCC---------CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 509 RFAGHIVAGYACQVNFSPDG---------RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg---------~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
.+..| ...|..+.|+|.| ..|++++.|+.|++||+..+.++..|..|..+|.+++|+| ++++|++|+.
T Consensus 396 ~l~~H--skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAsGs~ 472 (524)
T KOG0273|consen 396 DLQAH--SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLASGSL 472 (524)
T ss_pred hhhhh--ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEecCC
Confidence 44455 4456678898864 4789999999999999999999999999999999999999 8899999999
Q ss_pred CCcEEEcC
Q 007855 580 DGLIKYWD 587 (587)
Q Consensus 580 DG~I~iWD 587 (587)
||.|.||+
T Consensus 473 dg~V~iws 480 (524)
T KOG0273|consen 473 DGCVHIWS 480 (524)
T ss_pred CCeeEecc
Confidence 99999996
No 26
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.4e-32 Score=251.66 Aligned_cols=284 Identities=19% Similarity=0.308 Sum_probs=245.5
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
.++||..+++.|.++.+ |.+|+||+.|.++.||-. .+++.+-++.||.++|.|+..+.+.++|++|+.|.+++|||++
T Consensus 5 ~l~GHERplTqiKyN~e-GDLlFscaKD~~~~vw~s-~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~ 82 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNRE-GDLLFSCAKDSTPTVWYS-LNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVE 82 (327)
T ss_pred ccccCccccceEEecCC-CcEEEEecCCCCceEEEe-cCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcC
Confidence 47899999999999999 999999999999999987 7899999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCCcceEEEEccCCCCCcEEEEEeC-----CCcEEEEeCC-------CCcEEEEEccCCCCeeEEEEecCC
Q 007855 371 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 371 t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-----dg~I~iwD~~-------t~~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
+|+++..+..+..+..+.|.+.+ +++++... .+.|.++|++ ..++...+..+.+.++.+.|.|-+
T Consensus 83 tGk~la~~k~~~~Vk~~~F~~~g---n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 83 TGKQLATWKTNSPVKRVDFSFGG---NLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred CCcEEEEeecCCeeEEEeeccCC---cEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 99999999999999999999865 45555543 3679999998 445677788889999999999999
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
..|++|..||.|.+||++++.........|...|+.|+++++..+++++|.|.+-++||..+-..+. .+.. ..+
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~K---ty~t---e~P 233 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLK---TYTT---ERP 233 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEE---Eeee---ccc
Confidence 9999999999999999999877777777799999999999999999999999999999998765443 3322 467
Q ss_pred eEEEEEcCCCCEEEEEcCCCc--------------EEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 519 ACQVNFSPDGRFVMSGDGEGK--------------CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~--------------I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
+.+.+++|-..+++.|+...- -++|++-..+.+..+++|-++|++++||| ++...++||.||.|+
T Consensus 234 vN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 234 VNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVR 312 (327)
T ss_pred ccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEE
Confidence 788999998888887765422 22333333456778899999999999999 777899999999999
Q ss_pred Ec
Q 007855 585 YW 586 (587)
Q Consensus 585 iW 586 (587)
|.
T Consensus 313 ~h 314 (327)
T KOG0643|consen 313 LH 314 (327)
T ss_pred EE
Confidence 73
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.6e-32 Score=281.10 Aligned_cols=328 Identities=20% Similarity=0.349 Sum_probs=258.0
Q ss_pred CCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCC-CcEEEEEeCC
Q 007855 240 NAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKY-GHLILSAGMD 318 (587)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~-g~~L~sgs~D 318 (587)
+.++.......+++.+.++.+-|...|.|-... ..+.|.|+||.+.|.++.|+|+- ..+|++|..|
T Consensus 104 He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-------------~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D 170 (775)
T KOG0319|consen 104 HEAPVITMAFDPTGTLLATGGADGRVKVWDIKN-------------GYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATD 170 (775)
T ss_pred cCCCeEEEEEcCCCceEEeccccceEEEEEeeC-------------CEEEEEecCCCceEEEEEeCCccchhheeecCCC
Confidence 455666667888889999999999999995543 45789999999999999999973 2468999999
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccC------
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPD------ 392 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~------ 392 (587)
++|++||+.....++.++..|...|++++|++|+..+++++.|..|.|||+...+....+........+.+.+.
T Consensus 171 ~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~ 250 (775)
T KOG0319|consen 171 GTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKG 250 (775)
T ss_pred ceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcc
Confidence 99999999556667889999999999999999999999999999999999976554444332222222222221
Q ss_pred --------------------------------------------------------------------------------
Q 007855 393 -------------------------------------------------------------------------------- 392 (587)
Q Consensus 393 -------------------------------------------------------------------------------- 392 (587)
T Consensus 251 ~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~ 330 (775)
T KOG0319|consen 251 EYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMK 330 (775)
T ss_pred eEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeee
Confidence
Q ss_pred --CCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe-----------
Q 007855 393 --DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV----------- 459 (587)
Q Consensus 393 --~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~----------- 459 (587)
++..+.+++++..+.+++|++.+..+. .+.+|...|.++....+|-+|++|+.|.++++|.++...
T Consensus 331 ~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~g 409 (775)
T KOG0319|consen 331 FLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANG 409 (775)
T ss_pred ecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcc
Confidence 112233455555555555555444433 556788899999866677889999999999999663210
Q ss_pred -------------------------EEEE-------------------eecCCCcceeEEEEeCCCCEEEEEECCCeEEE
Q 007855 460 -------------------------VIKY-------------------ISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495 (587)
Q Consensus 460 -------------------------~~~~-------------------~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~i 495 (587)
.++. ....|...|++++++|+.++|++||.|.+.+|
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKi 489 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKI 489 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceee
Confidence 0010 01236677999999999999999999999999
Q ss_pred EEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEE
Q 007855 496 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 575 (587)
Q Consensus 496 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 575 (587)
|++... .....+.|| ...+.++.|+|..+.|++++.|++|+||.+.+..++++|.+|...|..+.|.. ++..|+
T Consensus 490 W~le~~---~l~~vLsGH--~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~-~~~qli 563 (775)
T KOG0319|consen 490 WDLEQL---RLLGVLSGH--TRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIR-NGKQLI 563 (775)
T ss_pred ecccCc---eEEEEeeCC--ccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeee-CCcEEE
Confidence 999843 345678888 46688999999999999999999999999999999999999999999999998 778999
Q ss_pred EEECCCcEEEcC
Q 007855 576 TCGWDGLIKYWD 587 (587)
Q Consensus 576 s~g~DG~I~iWD 587 (587)
||+.||.|+|||
T Consensus 564 S~~adGliKlWn 575 (775)
T KOG0319|consen 564 SAGADGLIKLWN 575 (775)
T ss_pred eccCCCcEEEEe
Confidence 999999999996
No 28
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.1e-30 Score=243.06 Aligned_cols=285 Identities=20% Similarity=0.397 Sum_probs=234.2
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC--CCeeeEEE-cccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN--SGKCMRTY-MGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~-~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
.+++++||.+.|..++|+|..|.+||||+.|..|+||+... +-.+...+ .+|...|++++|+|.|++|+++|+|.++
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~ 85 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV 85 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence 56889999999999999998678999999999999999832 12344333 3799999999999999999999999999
Q ss_pred EEEECCCC--cEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC---cEEEEEccCCCCeeEEEEecCC
Q 007855 365 KYWDTETG--QVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 365 ~vWd~~t~--~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
.||.-..+ +++..+..+. .+.+++|+.++ ++|++++.|+.|.+|.+..+ ++...++.|...|..+.|+|..
T Consensus 86 ~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG---~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~ 162 (312)
T KOG0645|consen 86 VIWKKEDGEFECVATLEGHENEVKCVAWSASG---NYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE 162 (312)
T ss_pred EEeecCCCceeEEeeeeccccceeEEEEcCCC---CEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence 99987655 5677776554 45688888755 69999999999999999754 5678899999999999999999
Q ss_pred CEEEEEECCCCEEEEECCC---CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
.+|+++|.|.+|++|.-.. -.+...+ ..|...|.+++|++.|..|++++.|++|+||-..... .+..
T Consensus 163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl-~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---------~~~~ 232 (312)
T KOG0645|consen 163 DLLFSCSYDNTIKVYRDEDDDDWECVQTL-DGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---------SGMH 232 (312)
T ss_pred ceeEEeccCCeEEEEeecCCCCeeEEEEe-cCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---------chhc
Confidence 9999999999999998762 2445555 4577799999999999999999999999999865321 1122
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC------eeE-EEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC------KVF-RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~------~~~-~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...+..+.|. ...|++++.|+.|++|.-... +++ ..-.+|...|+++.|.|....+|++||.||.|++|.
T Consensus 233 sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~ 309 (312)
T KOG0645|consen 233 SRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE 309 (312)
T ss_pred ccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence 4556668887 458999999999999976542 122 233579999999999996688999999999999993
No 29
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.5e-32 Score=252.34 Aligned_cols=283 Identities=23% Similarity=0.407 Sum_probs=253.4
Q ss_pred EEEcCCCCCeEEEEEcc--CCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 290 HTWSGHTKGVSAIRFFP--KYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp--~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
.+..||+.+|-.|+|+| ..|-+|++++.||.-.|-+- .++.-+-+|.+|.++|.+.+.+.+..+-++++.|-+-+||
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g-~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw 86 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNG-DTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW 86 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccC-CCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence 35679999999999997 23889999999999999887 7899999999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 368 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
|.-+|..+..|.+.+.+..++|..+. +.|++|+.+..+++||++..+ ...++.+|.+.|..+.|....+.|+++++
T Consensus 87 ~a~tgdelhsf~hkhivk~~af~~ds---~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSad 163 (334)
T KOG0278|consen 87 DAVTGDELHSFEHKHIVKAVAFSQDS---NYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSAD 163 (334)
T ss_pred hhhhhhhhhhhhhhheeeeEEecccc---hhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeecc
Confidence 99999999999999999999998765 579999999999999998763 56778899999999999999999999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
|++||+||.+++..++.+. ...+|+++.++++|.+|.++. .+.|.+||..+...+...+ ....|.+..++|
T Consensus 164 d~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~dG~ilTia~-gssV~Fwdaksf~~lKs~k------~P~nV~SASL~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQDGRILTIAY-GSSVKFWDAKSFGLLKSYK------MPCNVESASLHP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEe--cCCCCcceeeccCCCEEEEec-CceeEEeccccccceeecc------CccccccccccC
Confidence 9999999999999998884 567899999999998776654 6779999998755443222 235577789999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEE-ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+..++++|+.|+.++.||..++..+..+ ++|.++|.|+.|+| ++...++|+.||+|+||
T Consensus 235 ~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSP-dGE~yAsGSEDGTirlW 294 (334)
T KOG0278|consen 235 KKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSP-DGELYASGSEDGTIRLW 294 (334)
T ss_pred CCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECC-CCceeeccCCCceEEEE
Confidence 9999999999999999999999998886 89999999999999 88899999999999999
No 30
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=2.8e-30 Score=296.44 Aligned_cols=286 Identities=15% Similarity=0.281 Sum_probs=230.9
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC---CC----eeeEEEcccCCceeeEEEec-CCCeEEEEeCCCe
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN---SG----KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 363 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~----~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~ 363 (587)
+.+|...|++++|+|+ +++|++|+.|+.|+||++.. .+ .....+. +...|.+++|++ ++.+|++++.||+
T Consensus 479 ~~~~~~~V~~i~fs~d-g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~ 556 (793)
T PLN00181 479 LLNSSNLVCAIGFDRD-GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGV 556 (793)
T ss_pred ccCCCCcEEEEEECCC-CCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCe
Confidence 4459999999999999 89999999999999999732 11 1223333 346799999987 5789999999999
Q ss_pred EEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEe-cCCCEE
Q 007855 364 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV-DNNRRF 441 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s-p~~~~l 441 (587)
|+|||+.+++.+..+..+ ..+.++.|++. .+.+|++|+.|+.|++||++++..+..+..+ ..|.++.|+ +++.+|
T Consensus 557 v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~--~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~l 633 (793)
T PLN00181 557 VQVWDVARSQLVTEMKEHEKRVWSIDYSSA--DPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSL 633 (793)
T ss_pred EEEEECCCCeEEEEecCCCCCEEEEEEcCC--CCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEE
Confidence 999999999988888654 34567777753 3468999999999999999999888888754 689999995 578999
Q ss_pred EEEECCCCEEEEECCCCeE-EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce---eecccceeccccccc
Q 007855 442 VTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF---QLNKKKRFAGHIVAG 517 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~ 517 (587)
++|+.|+.|++||++.... +..+ ..|...|.++.|. ++.+|++++.|+.|++||+.... .......+.+| ..
T Consensus 634 atgs~dg~I~iwD~~~~~~~~~~~-~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~ 709 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLPLCTM-IGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TN 709 (793)
T ss_pred EEEeCCCeEEEEECCCCCccceEe-cCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CC
Confidence 9999999999999987653 3333 4688899999997 67899999999999999987431 11233456666 45
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-------------ecCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-------------KCHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l-------------~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
.+..++|+|++.+|++|+.||.|++|+......+..+ ..|...|.+++|+| ++..|++|+.||.|+
T Consensus 710 ~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~-~~~~lva~~~dG~I~ 788 (793)
T PLN00181 710 VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG-QSSTLVAANSTGNIK 788 (793)
T ss_pred CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC-CCCeEEEecCCCcEE
Confidence 6778999999999999999999999998765443222 23456799999999 778999999999999
Q ss_pred EcC
Q 007855 585 YWD 587 (587)
Q Consensus 585 iWD 587 (587)
|||
T Consensus 789 i~~ 791 (793)
T PLN00181 789 ILE 791 (793)
T ss_pred EEe
Confidence 997
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-30 Score=244.46 Aligned_cols=287 Identities=22% Similarity=0.335 Sum_probs=236.2
Q ss_pred hhccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEE
Q 007855 235 KEDKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILS 314 (587)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~s 314 (587)
+..+++-.++........+....+.+.|...=.| ......-+|.+.-....|..++|+|. ++++|+
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvW-------------Ds~TtnK~haipl~s~WVMtCA~sPS-g~~VAc 114 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVW-------------DSFTTNKVHAIPLPSSWVMTCAYSPS-GNFVAC 114 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEE-------------EcccccceeEEecCceeEEEEEECCC-CCeEEe
Confidence 3445555555555555555554555444444344 33444456667777888999999999 999999
Q ss_pred EeCCCeEEEEecCCCC------eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEE
Q 007855 315 AGMDTKVKIWDVFNSG------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVV 387 (587)
Q Consensus 315 gs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~ 387 (587)
|+.|+...||++. .. ...+.+.+|.+.+.|+.|.+ ...|+++|.|.++.+||+++++.+..|..+. .+..+
T Consensus 115 GGLdN~Csiy~ls-~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~sl 192 (343)
T KOG0286|consen 115 GGLDNKCSIYPLS-TRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSL 192 (343)
T ss_pred cCcCceeEEEecc-cccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEE
Confidence 9999999999994 33 55678999999999999997 4579999999999999999999999997543 33455
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec-
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE- 466 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~- 466 (587)
.+.|. ..+.|++|+.|+..++||++.+..++.|.+|.+.|++++|.|+|.-|++|++|+++++||++....+..+..
T Consensus 193 sl~p~--~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~ 270 (343)
T KOG0286|consen 193 SLSPS--DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD 270 (343)
T ss_pred ecCCC--CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC
Confidence 55554 568999999999999999999999999999999999999999999999999999999999999877766643
Q ss_pred CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 467 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 467 ~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
....+|++++|+..|++|++|..|..+.+||.-.+..+ ..+.|| ...|.++..+|||.-|++|+.|..|+||.
T Consensus 271 ~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~v---g~L~GH--eNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 271 SIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERV---GVLAGH--ENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cccCCceeEEEcccccEEEeeecCCceeEeeccccceE---EEeecc--CCeeEEEEECCCCcEEEecchhHheeecC
Confidence 34567999999999999999999999999998766544 456678 56799999999999999999999999994
No 32
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=8.5e-32 Score=282.69 Aligned_cols=248 Identities=25% Similarity=0.493 Sum_probs=219.5
Q ss_pred CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-------------------------------EEE-E
Q 007855 330 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-------------------------------VIR-T 377 (587)
Q Consensus 330 ~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-------------------------------~i~-~ 377 (587)
.-++.++..-...++|..|++++.+||.|-.|..|++|.+...+ ... -
T Consensus 368 Sic~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L 447 (707)
T KOG0263|consen 368 SICMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTL 447 (707)
T ss_pred cEEEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEe
Confidence 34555565566789999999999999999999999999887321 011 1
Q ss_pred eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC
Q 007855 378 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
..+..+++.+.|+|+. ++|++++.|++|++|.+.+...+-.+.+|..+|.++.|+|.|-+|+++|.|++-++|....
T Consensus 448 ~GH~GPVyg~sFsPd~---rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~ 524 (707)
T KOG0263|consen 448 YGHSGPVYGCSFSPDR---RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH 524 (707)
T ss_pred ecCCCceeeeeecccc---cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence 1233455677788765 6899999999999999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
..+.+.+. .|...|.|+.|||+..|+++||.|.+|++||+.++..+ +.|.|| .+.|.+++|||+|+||++|+.|
T Consensus 525 ~~PlRifa-ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V---RiF~GH--~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 525 NKPLRIFA-GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV---RIFTGH--KGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred CCchhhhc-ccccccceEEECCcccccccCCCCceEEEEEcCCCcEE---EEecCC--CCceEEEEEcCCCceEeecccC
Confidence 88877664 69999999999999999999999999999999988765 567888 6889999999999999999999
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 538 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 538 G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.|.+||+.+++++..+.+|.+.|.++.|+. ++..||+||.|.+|++||
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~-dg~vLasgg~DnsV~lWD 647 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSR-DGNVLASGGADNSVRLWD 647 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEec-CCCEEEecCCCCeEEEEE
Confidence 9999999999999999999999999999999 888999999999999998
No 33
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1e-32 Score=263.78 Aligned_cols=267 Identities=24% Similarity=0.460 Sum_probs=227.4
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
..++|+|+.+. ...++||..|++|+|||. ++..+++.+.||++.|.|+.|. .+.|++||.|.+|+|||+++|++
T Consensus 196 ~skgVYClQYD---D~kiVSGlrDnTikiWD~-n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~ 269 (499)
T KOG0281|consen 196 NSKGVYCLQYD---DEKIVSGLRDNTIKIWDK-NSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEP 269 (499)
T ss_pred cCCceEEEEec---chhhhcccccCceEEecc-ccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCch
Confidence 56789999996 458999999999999999 8899999999999999999994 56999999999999999999999
Q ss_pred EEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc---EEEEEccCCCCeeEEEEecCCCEEEEEECCCCE
Q 007855 375 IRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSL 450 (587)
Q Consensus 375 i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~---~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I 450 (587)
+.++-++.. +.-+.|+. .++++++.|.+|.+||+.+.. +...+.+|..+|+.+.|+ .+++++++.|.+|
T Consensus 270 l~tlihHceaVLhlrf~n-----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTi 342 (499)
T KOG0281|consen 270 LNTLIHHCEAVLHLRFSN-----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTI 342 (499)
T ss_pred hhHHhhhcceeEEEEEeC-----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceE
Confidence 988865433 22334432 589999999999999998763 345577999999999996 5699999999999
Q ss_pred EEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 451 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
++|++.+...++.+. +|...|.|+.+ .++++++|+.|++|++||+..+.++ ..+.|| ..-|.++.| |.+.
T Consensus 343 kvW~~st~efvRtl~-gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL---RvLeGH--EeLvRciRF--d~kr 412 (499)
T KOG0281|consen 343 KVWSTSTCEFVRTLN-GHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL---RVLEGH--EELVRCIRF--DNKR 412 (499)
T ss_pred EEEeccceeeehhhh-cccccceehhc--cCeEEEecCCCceEEEEeccccHHH---HHHhch--HHhhhheee--cCce
Confidence 999999999998875 58888887776 6899999999999999999988665 556677 466778888 5678
Q ss_pred EEEEcCCCcEEEEeCCCCe---------eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 531 VMSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+++|..||+|++||+..+. ++..+..|++.|..+.|. ...+++++-|.+|.|||
T Consensus 413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWD 475 (499)
T ss_pred eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEE
Confidence 9999999999999997653 345566799999999995 46899999999999997
No 34
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2.6e-32 Score=258.69 Aligned_cols=295 Identities=25% Similarity=0.434 Sum_probs=249.8
Q ss_pred CCCceEEEEc-CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE--------EEcccCCceeeEEEecCCCe
Q 007855 284 IPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR--------TYMGHSKAVRDISFCNDGTK 354 (587)
Q Consensus 284 ~p~~~i~tl~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~--------~~~~h~~~V~~l~fs~dg~~ 354 (587)
.|..+.++++ |....+.|.+|+|+ |++|++|+.||.|.+|+. .+++... .|.-+..+|.|++|+.|...
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPD-gqyLvsgSvDGFiEVWny-~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM 277 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPD-GQYLVSGSVDGFIEVWNY-TTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM 277 (508)
T ss_pred chHHhhhheecccccchhheeeCCC-CceEeeccccceeeeehh-ccchhhhhhhhhhhcceeecccceEEEeecccHHH
Confidence 4455555554 56667999999999 999999999999999998 6666543 34568899999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEE
Q 007855 355 FLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 432 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i 432 (587)
|++|+.||.|+||.+++|+|++.|...+ .+.++.|+.++ ..+++++.|.++++.-+.+|+++.++.+|.+-|+..
T Consensus 278 lAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~---SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a 354 (508)
T KOG0275|consen 278 LASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN---SQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEA 354 (508)
T ss_pred hhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc---chhhcccccceEEEeccccchhHHHhcCccccccce
Confidence 9999999999999999999999998544 45566666654 359999999999999999999999999999999999
Q ss_pred EEecCCCEEEEEECCCCEEEEECCCCeEEEEeec-CCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeeccccee
Q 007855 433 TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRF 510 (587)
Q Consensus 433 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~ 510 (587)
.|.++|.++++++.||+|++|+..+..++..+.. +...+|.++-.-| +...+++|...++|+|.++... .+....
T Consensus 355 ~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQ-vVrsfs-- 431 (508)
T KOG0275|consen 355 TFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQ-VVRSFS-- 431 (508)
T ss_pred EEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccce-EEeeec--
Confidence 9999999999999999999999999988877754 3445788887777 4578899999999999998642 332221
Q ss_pred cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 511 ~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.|....+...+.++||.|.++.+.+.|+.++.|.+.+|++-.++..|...|.+++-+| ..++|++-+.||.+++|-
T Consensus 432 SGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 432 SGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence 2222245556688999999999999999999999999999999999999999999999 677999999999999993
No 35
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=1e-30 Score=271.66 Aligned_cols=291 Identities=20% Similarity=0.322 Sum_probs=247.7
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
..+++..+-|..+.|..++|--...++|+.++..+.++++++ .+..+. .+.||...|.++....+|-+|+|||.|.++
T Consensus 312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~-~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTL-PTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEec-CCCceE-EEeCchhheeeeeecccCcEEEEecCCceE
Confidence 345677788999999999987655789999999999999998 455554 889999999999966678899999999999
Q ss_pred EEEECCCCcEE----EEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-----EEE----EEccCCCCee
Q 007855 365 KYWDTETGQVI----RTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----ITQ----EYDQHLGAVN 430 (587)
Q Consensus 365 ~vWd~~t~~~i----~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-----~~~----~~~~h~~~I~ 430 (587)
++|.++.+... .... +.....+++++. ....+|++++.|++|++|++...+ .+. ....|...|+
T Consensus 390 ilWr~~~~~~~~~~~a~~~gH~~svgava~~~--~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN 467 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQANGHTNSVGAVAGSK--LGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDIN 467 (775)
T ss_pred EEEEecCCcchhhhhhhhcccccccceeeecc--cCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhccccc
Confidence 99988554322 2222 223344555533 445799999999999999998622 111 2246999999
Q ss_pred EEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee
Q 007855 431 TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF 510 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~ 510 (587)
|++++|+...|+|||.|++.+||++........+. +|...+.++.|+|+.+.++++|.|.+|+||.+.+..++ +++
T Consensus 468 ~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl---kT~ 543 (775)
T KOG0319|consen 468 CVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL---KTF 543 (775)
T ss_pred ceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEeccccceeEeccCCceEEEEEeccceee---eee
Confidence 99999999999999999999999999777777765 69999999999999999999999999999999987665 778
Q ss_pred cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 511 ~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.|| ...|..+.|-.+|..|++++.||.|++|+++++.++.++.+|...|++++.++ ...+++|||.||.|.+|
T Consensus 544 eGH--~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~-~~~~~~tgg~Dg~i~~w 616 (775)
T KOG0319|consen 544 EGH--TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP-LLDMFVTGGGDGRIIFW 616 (775)
T ss_pred cCc--cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecC-ccceeEecCCCeEEEEe
Confidence 888 56688899999999999999999999999999999999999999999999999 66699999999999999
No 36
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-30 Score=251.56 Aligned_cols=278 Identities=21% Similarity=0.418 Sum_probs=235.1
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC---eEEEEeCCCeEEEEECC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT---KFLTASYDKNIKYWDTE 370 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~---~l~s~s~Dg~I~vWd~~ 370 (587)
-|.+.|.+|... +..++||+.||.++||+. .|+++.++.+|.++|.+++|..... .|++++.|.++++|-++
T Consensus 103 ~hdDWVSsv~~~---~~~IltgsYDg~~riWd~--~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 103 LHDDWVSSVKGA---SKWILTGSYDGTSRIWDL--KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred cchhhhhhhccc---CceEEEeecCCeeEEEec--CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 389999999887 459999999999999997 8999999999999999999865333 59999999999999998
Q ss_pred CCcEEEEee---cCCcc--eEEEEccCCCCCcEEEEEeCCCcEEEEeCC-------------------------CCcEEE
Q 007855 371 TGQVIRTFS---TGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMN-------------------------TKEITQ 420 (587)
Q Consensus 371 t~~~i~~~~---~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-------------------------t~~~~~ 420 (587)
.+...-... .++.. .++....+ +..+++|+.|..|.+|+.. ++.++.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv~~s---gtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSVDSS---GTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEecCC---CCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 775432211 13333 34444443 3689999999999999932 123556
Q ss_pred EEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 421 EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 421 ~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
.+.+|..+|.++.|++ ...+++++.|.+|+.||+.++..+..+. ...++.++..+|...+|++|+.|..|++||.++
T Consensus 255 tl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 255 TLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred EecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeecccccceeeecCCCCceeecCCCC
Confidence 7789999999999998 6789999999999999999998887774 567899999999999999999999999999988
Q ss_pred ceeecccceecccccccceEEEEEcCCCCE-EEEEcCCCcEEEEeCCCCe-eEEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-L~sgs~dG~I~vwd~~t~~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
+.--.....+.+| ..+|..+.|+|...| |++|+.|+++++||+++.+ ++..+.+|...|.++.|.. +..|+|||
T Consensus 332 ~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~--~~~IvSGG 407 (423)
T KOG0313|consen 332 GDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE--GGLIVSGG 407 (423)
T ss_pred CCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC--CceEEecc
Confidence 7655566788888 458999999996654 7899999999999999988 8999999999999999984 56899999
Q ss_pred CCCcEEEc
Q 007855 579 WDGLIKYW 586 (587)
Q Consensus 579 ~DG~I~iW 586 (587)
.|.+|+|+
T Consensus 408 aD~~l~i~ 415 (423)
T KOG0313|consen 408 ADNKLRIF 415 (423)
T ss_pred CcceEEEe
Confidence 99999986
No 37
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=5.6e-30 Score=256.21 Aligned_cols=299 Identities=20% Similarity=0.353 Sum_probs=236.4
Q ss_pred ccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEE----cccCCceeeEEEecCCCeEEE
Q 007855 282 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY----MGHSKAVRDISFCNDGTKFLT 357 (587)
Q Consensus 282 ~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~----~~h~~~V~~l~fs~dg~~l~s 357 (587)
-.+|...-..|++|+..|+++++.|. |..|+|||.|-+|++||+..-....+.| ......|+++.|++.|..|++
T Consensus 153 ~~IP~shEi~l~hgtk~Vsal~~Dp~-GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLv 231 (641)
T KOG0772|consen 153 KLIPGSHEIQLKHGTKIVSALAVDPS-GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILV 231 (641)
T ss_pred hcCCccceEeccCCceEEEEeeecCC-CceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEE
Confidence 35777777899999999999999999 9999999999999999994322222222 234567999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEeec-----------CCc--ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEc
Q 007855 358 ASYDKNIKYWDTETGQVIRTFST-----------GKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYD 423 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~~~-----------~~~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~ 423 (587)
.+.....+|+|-...+.+..... +|. ..|.+|+|.. ...|++++.||++++||+...+ ..+.+.
T Consensus 232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~--k~~FlT~s~DgtlRiWdv~~~k~q~qVik 309 (641)
T KOG0772|consen 232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDN--KEEFLTCSYDGTLRIWDVNNTKSQLQVIK 309 (641)
T ss_pred EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCc--ccceEEecCCCcEEEEecCCchhheeEEe
Confidence 99999999999765544433322 233 3456666654 4689999999999999997643 333332
Q ss_pred -----cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC--eEEEEeecCCCc--ceeEEEEeCCCCEEEEEECCCeEE
Q 007855 424 -----QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMH--SMPSISLHPNTNWLAAQSLDNQIL 494 (587)
Q Consensus 424 -----~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~--~i~~i~~sp~g~~l~~~s~dg~I~ 494 (587)
+..-++++++|++++++|++|+.||+|.+|+.+.. .+...+...|.. .|+||+|+++|++|++-+.|++++
T Consensus 310 ~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLK 389 (641)
T KOG0772|consen 310 TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLK 389 (641)
T ss_pred eccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCcee
Confidence 23457899999999999999999999999997543 333445556766 899999999999999999999999
Q ss_pred EEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 495 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 495 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
+||++..... +....+....-.-+.++|||+.++|++|++ .|.+++||..+...+.++......|..|.|||
T Consensus 390 vWDLrq~kkp--L~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Whp 467 (641)
T KOG0772|consen 390 VWDLRQFKKP--LNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHP 467 (641)
T ss_pred eeeccccccc--hhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecc
Confidence 9999875432 333444444455667999999999999864 57899999999999999988888999999999
Q ss_pred CCCCEEEEEECCCcEEEc
Q 007855 569 LEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 569 ~~~~~l~s~g~DG~I~iW 586 (587)
.-+.|+.++.||+++||
T Consensus 468 -kLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 468 -KLNQIFAGSGDGTAHVY 484 (641)
T ss_pred -hhhheeeecCCCceEEE
Confidence 55677888889999885
No 38
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.5e-30 Score=250.80 Aligned_cols=284 Identities=18% Similarity=0.375 Sum_probs=244.3
Q ss_pred CCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCC
Q 007855 240 NAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDT 319 (587)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg 319 (587)
+...+......+.-.+.+.+.+|+..+.|... .+.+...++||+++|..|+|+.. |.+|++++.|-
T Consensus 107 ~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~-------------tg~~e~~LrGHt~sv~di~~~a~-Gk~l~tcSsDl 172 (406)
T KOG0295|consen 107 HRSSVTRVIFHPSEALVVSASEDATIKVFDTE-------------TGELERSLRGHTDSVFDISFDAS-GKYLATCSSDL 172 (406)
T ss_pred cccceeeeeeccCceEEEEecCCceEEEEEcc-------------chhhhhhhhccccceeEEEEecC-ccEEEecCCcc
Confidence 33334444556666677777788888877544 45567899999999999999999 99999999999
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEE
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 399 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l 399 (587)
.+++||......+++.+.+|...|.+++|-|.|.++++++.|.+|+.|++.+|-++.+|..+.. ++-.+.+.. .+.++
T Consensus 173 ~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e-wvr~v~v~~-DGti~ 250 (406)
T KOG0295|consen 173 SAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE-WVRMVRVNQ-DGTII 250 (406)
T ss_pred chhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH-hEEEEEecC-CeeEE
Confidence 9999999655788999999999999999999999999999999999999999999999986654 333333333 35799
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC---------------CCEEEEEECCCCEEEEECCCCeEEEEe
Q 007855 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN---------------NRRFVTSSDDKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 400 ~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~---------------~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 464 (587)
++++.|.+|++|-+.++++...+..|.-+|-|++|.|. +.++.+++.|++|++||+.++.++..+
T Consensus 251 As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 251 ASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred EecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 99999999999999999999999999999999999762 358999999999999999999999888
Q ss_pred ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 465 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 465 ~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
. +|...|..++|+|.|+||+++..|+++++||+++..++..+ ..| ...++++.|+.+-.|+++|+-|..+++|.
T Consensus 331 ~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~---~ah--~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 331 V-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTL---EAH--EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred e-cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeecc---CCC--cceeEEEecCCCCceEEeccccceeeeee
Confidence 6 59999999999999999999999999999999988776443 344 56788999999999999999999999996
Q ss_pred C
Q 007855 545 W 545 (587)
Q Consensus 545 ~ 545 (587)
.
T Consensus 405 c 405 (406)
T KOG0295|consen 405 C 405 (406)
T ss_pred c
Confidence 4
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=267.51 Aligned_cols=284 Identities=20% Similarity=0.330 Sum_probs=248.3
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
.|...+..|..|+|+|. ..+++++-..|.|++||. .-+.++..|..|.++|+.++|+|.+.+|+||+.|-.|+||+..
T Consensus 4 kfEskSsRvKglsFHP~-rPwILtslHsG~IQlWDY-RM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk 81 (1202)
T KOG0292|consen 4 KFESKSSRVKGLSFHPK-RPWILTSLHSGVIQLWDY-RMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK 81 (1202)
T ss_pred hhhcccccccceecCCC-CCEEEEeecCceeeeehh-hhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence 34556778999999999 889999999999999998 8999999999999999999999999999999999999999999
Q ss_pred CCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 371 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 371 t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
+.+++.++..+- .+..+.|++.- ..+++++.|.+|+||+..+++++..+.+|.--|.|..|+|....++++|-|.+
T Consensus 82 ~rrclftL~GHlDYVRt~~FHhey---PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQT 158 (1202)
T KOG0292|consen 82 TRRCLFTLLGHLDYVRTVFFHHEY---PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQT 158 (1202)
T ss_pred cceehhhhccccceeEEeeccCCC---ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccce
Confidence 999998886543 34455565543 47999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCC----------------------------CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCc
Q 007855 450 LRVWEFGI----------------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 450 I~iwd~~~----------------------------~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
|||||+.. ...++.+.++|...|.-++|+|.-.+|++|+.|..|++|.+...
T Consensus 159 VRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 159 VRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 99999742 12456667789999999999999999999999999999998654
Q ss_pred eeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 502 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 502 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
.. -......|| ...|.++-|+|...+|++.+.|+.|+|||+...+.+.+++...+..+.++-+| ..+++++|-+.|
T Consensus 239 Ka-WEvDtcrgH--~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP-~lNLfAAgHDsG 314 (1202)
T KOG0292|consen 239 KA-WEVDTCRGH--YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHP-ELNLFAAGHDSG 314 (1202)
T ss_pred cc-eeehhhhcc--cCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecC-CcceeeeecCCc
Confidence 33 345677888 45688999999999999999999999999999999999998888899999999 666666666555
Q ss_pred cE
Q 007855 582 LI 583 (587)
Q Consensus 582 ~I 583 (587)
.+
T Consensus 315 m~ 316 (1202)
T KOG0292|consen 315 MI 316 (1202)
T ss_pred eE
Confidence 43
No 40
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.2e-29 Score=255.78 Aligned_cols=286 Identities=20% Similarity=0.353 Sum_probs=255.6
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
..+++..|+..|.+|.|+|. ..+++++-.+|.|.||+. ++...++.+.-..-+|++..|-..-+++++|+.|..|+||
T Consensus 5 ~krk~~~rSdRVKsVd~HPt-ePw~la~LynG~V~IWny-etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 5 FKRKFQSRSDRVKSVDFHPT-EPWILAALYNGDVQIWNY-ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhhHhhccCCceeeeecCCC-CceEEEeeecCeeEEEec-ccceeeeeeeecccchhhheeeeccceEEEecCCceEEEE
Confidence 34566679999999999999 889999999999999999 8899999999899999999999999999999999999999
Q ss_pred ECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEec-CCCEEEEE
Q 007855 368 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-NNRRFVTS 444 (587)
Q Consensus 368 d~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp-~~~~l~s~ 444 (587)
+..+++.+..|..+ ..+.++..+|.. .++++++.|-.|++||.... .+.++|.+|.--|.+++|.| |.+.|+++
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~---P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~ 159 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTL---PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASA 159 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCC---CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeee
Confidence 99999999999865 456788888865 48999999999999999876 78899999999999999998 56789999
Q ss_pred ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC--CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEE
Q 007855 445 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g--~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
|-|++|+||.+..+.+..++. +|...|.|+.+-+.| .+|++|+.|..|+|||..+..++ ..+.||. ..|..+
T Consensus 160 sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV---~TLeGHt--~Nvs~v 233 (794)
T KOG0276|consen 160 SLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV---QTLEGHT--NNVSFV 233 (794)
T ss_pred eccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH---HHhhccc--ccceEE
Confidence 999999999999999988886 799999999998855 69999999999999999887665 5677784 557789
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 523 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
+|+|.-.++++|+.||+++||+..+-++..++.-.-..|+|++-.+ +...++.|.+.|.|.|
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k-~~~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHK-GDGKIAVGFDEGSVTV 295 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecC-CCCeEEEeccCCcEEE
Confidence 9999999999999999999999999999988888888999999998 6667888888887754
No 41
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=4.2e-29 Score=231.30 Aligned_cols=283 Identities=22% Similarity=0.331 Sum_probs=245.3
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee--EEEcccCCceeeEEEec-CCCeEEEEeCCCeEEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM--RTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKY 366 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~v 366 (587)
+.+++|...|.+|+|+-+ |..|++|+.|+++.+|++. ..... ..+.+|.+.|-.++|+| ....|++++.|.+|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~-g~~lasgs~dktv~v~n~e-~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCD-GTKLASGSFDKTVSVWNLE-RDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEccc-CceeeecccCCceEEEEec-chhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 567899999999999999 9999999999999999994 33333 24578999999999998 6679999999999999
Q ss_pred EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 367 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
||++.++++..+........+.|.|++ .+++++..|..|.+.|.++.+.+...+ ....++.++|+-++.+|+....
T Consensus 92 wd~r~~k~~~~i~~~~eni~i~wsp~g---~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~G 167 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENINITWSPDG---EYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNG 167 (313)
T ss_pred EEeccCcEEEEeeccCcceEEEEcCCC---CEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecC
Confidence 999999999999988888889999976 479999999999999999998877664 5577889999988888888888
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
.|.|.|..+...+++..+. .|.....||.|+|+|++||+|+.|-.+.+||+....+...+.. + .-+|..+.||.
T Consensus 168 lG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR---l--dwpVRTlSFS~ 241 (313)
T KOG1407|consen 168 LGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR---L--DWPVRTLSFSH 241 (313)
T ss_pred CceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc---c--cCceEEEEecc
Confidence 8999999999888888775 5888899999999999999999999999999986555443333 3 45677899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC---------CcEEEc
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD---------GLIKYW 586 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D---------G~I~iW 586 (587)
+|++||+|+.|..|-|=++++|..+..++ +.++...++||| ...+||-++.| |.|+||
T Consensus 242 dg~~lASaSEDh~IDIA~vetGd~~~eI~-~~~~t~tVAWHP-k~~LLAyA~ddk~~d~~reag~vKiF 308 (313)
T KOG1407|consen 242 DGRMLASASEDHFIDIAEVETGDRVWEIP-CEGPTFTVAWHP-KRPLLAYACDDKDGDSNREAGTVKIF 308 (313)
T ss_pred CcceeeccCccceEEeEecccCCeEEEee-ccCCceeEEecC-CCceeeEEecCCCCccccccceeEEe
Confidence 99999999999999999999999999998 788899999999 66777777664 567765
No 42
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=5e-30 Score=246.42 Aligned_cols=247 Identities=21% Similarity=0.362 Sum_probs=220.3
Q ss_pred CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 329 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 329 ~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
.-++.+.+.+|.+.|+|+++.|...+|++|+.|++|+|||+.+|++..++..+ ....-++++.-. .++++++.|+.
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH---pYlFs~gedk~ 216 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH---PYLFSAGEDKQ 216 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC---ceEEEecCCCe
Confidence 44667788999999999999999999999999999999999999999988743 445566666644 48999999999
Q ss_pred EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE
Q 007855 408 IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
|+.||+...+.++.+.+|.+.|.|++.+|.-..|++|+.|.+++|||+++...+..+. +|..+|.++.+.|....+++|
T Consensus 217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dpqvit~ 295 (460)
T KOG0285|consen 217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDPQVITG 295 (460)
T ss_pred eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCCceEEe
Confidence 9999999999999999999999999999999999999999999999999999888775 599999999999988899999
Q ss_pred ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEc
Q 007855 488 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 488 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~s 567 (587)
|.|++|++||++.+... ..+..| ...+.+++.+|....+++++.| .|+-|++..|..+..+.+|...|++++..
T Consensus 296 S~D~tvrlWDl~agkt~---~tlt~h--kksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~iintl~~n 369 (460)
T KOG0285|consen 296 SHDSTVRLWDLRAGKTM---ITLTHH--KKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNAIINTLSVN 369 (460)
T ss_pred cCCceEEEeeeccCcee---Eeeecc--cceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccceeeeeeec
Confidence 99999999999987654 333344 4568889999999999999887 69999999999999999999999999998
Q ss_pred CCCCCEEEEEECCCcEEEcC
Q 007855 568 PLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 568 p~~~~~l~s~g~DG~I~iWD 587 (587)
. + .++++|++.|.|.+||
T Consensus 370 s-D-~v~~~G~dng~~~fwd 387 (460)
T KOG0285|consen 370 S-D-GVLVSGGDNGSIMFWD 387 (460)
T ss_pred c-C-ceEEEcCCceEEEEEe
Confidence 6 3 4899999999999997
No 43
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=1.9e-30 Score=253.75 Aligned_cols=294 Identities=21% Similarity=0.365 Sum_probs=247.7
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEE
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTA 358 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~ 358 (587)
...+|.+....+..|.+.|..+.|-++ ...|++|+.|..|++|++ ...+ .+.++.+..++|+++.|.+++.+++++
T Consensus 160 ~~~lpS~~~~~ld~h~gev~~v~~l~~-sdtlatgg~Dr~Ik~W~v-~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAa 237 (459)
T KOG0288|consen 160 EDTLPSRALFVLDAHEGEVHDVEFLRN-SDTLATGGSDRIIKLWNV-LGEKSELISTLAGSLGNITSIDFDSDNKHVIAA 237 (459)
T ss_pred hcccchhhhhhhhccccccceeEEccC-cchhhhcchhhhhhhhhc-ccchhhhhhhhhccCCCcceeeecCCCceEEee
Confidence 345788888999999999999999998 789999999999999999 4444 677888899999999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 359 SYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
++|+.+++|++...+...++..+.. ..++.+.... ..+++|+.|.+|++||+....+..++. ....++.|+..
T Consensus 238 s~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~---~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~-- 311 (459)
T KOG0288|consen 238 SNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH---SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS-- 311 (459)
T ss_pred cCCCceeeeeccchhhhhhhcccccceeeehhhccc---cceeeccccchhhhhhhhhhheecccc-ccccccceEec--
Confidence 9999999999999999999887433 2334443332 239999999999999999987777654 34566777765
Q ss_pred CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc
Q 007855 438 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
...+++|-.|+.|++||++...+...+ +..+.|+++..++++..|.+++.|..+.++|+++........ -.+.....
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv--~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~s-A~g~k~as 388 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSV--PLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFS-AEGFKCAS 388 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEe--ecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEee-cccccccc
Confidence 557899999999999999999888877 455699999999999999999999999999998865443322 22333344
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC--CEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
-.+.+.|||++.|+++|+.||.|+||++.++++...+..... .|++++|+| .++.|++++.++.+.+|
T Consensus 389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~-sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNP-SGSGLLSADKQKAVTLW 458 (459)
T ss_pred ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcC-CCchhhcccCCcceEec
Confidence 577899999999999999999999999999999999876554 499999999 78899999999999999
No 44
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1.1e-29 Score=259.09 Aligned_cols=246 Identities=22% Similarity=0.441 Sum_probs=221.6
Q ss_pred eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcce-EEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 333 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 333 ~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
.+++..++..|.++.|+|...+++++-+.|.|.||+.++...++.|.....+. ...|.. ..+.+++|+.|..|++|
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfia---RknWiv~GsDD~~IrVf 82 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIA---RKNWIVTGSDDMQIRVF 82 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeee---ccceEEEecCCceEEEE
Confidence 34566699999999999999999999999999999999999999998665543 445544 33689999999999999
Q ss_pred eCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECC
Q 007855 412 DMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD 490 (587)
Q Consensus 412 D~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~d 490 (587)
+.++++.+..|..|..-|.||+.+|...+++++|+|-+|++||+...-.......+|.+-|.+++|.| +.+.|+++|.|
T Consensus 83 nynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLD 162 (794)
T KOG0276|consen 83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLD 162 (794)
T ss_pred ecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeecc
Confidence 99999999999999999999999999999999999999999999999888888889999999999999 56899999999
Q ss_pred CeEEEEEcCCceeecccceecccccccceEEEEEcCCC--CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 491 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg--~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
++|++|.+.+..+ ..++.+| ...|.+++|-+.| .||++|+.|..|+|||.++..++.++.+|...|..+.|+|
T Consensus 163 rTVKVWslgs~~~---nfTl~gH--ekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp 237 (794)
T KOG0276|consen 163 RTVKVWSLGSPHP---NFTLEGH--EKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP 237 (794)
T ss_pred ccEEEEEcCCCCC---ceeeecc--ccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence 9999999976544 3566778 4668889998755 6999999999999999999999999999999999999999
Q ss_pred CCCCEEEEEECCCcEEEcC
Q 007855 569 LEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 569 ~~~~~l~s~g~DG~I~iWD 587 (587)
.-.+++|||.||++|||+
T Consensus 238 -~lpiiisgsEDGTvriWh 255 (794)
T KOG0276|consen 238 -ELPIIISGSEDGTVRIWN 255 (794)
T ss_pred -CCcEEEEecCCccEEEec
Confidence 788999999999999995
No 45
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=1.8e-29 Score=238.45 Aligned_cols=291 Identities=21% Similarity=0.356 Sum_probs=244.1
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-----------------CCeeeEEEcccCCceeeEEEec
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-----------------SGKCMRTYMGHSKAVRDISFCN 350 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-----------------~~~~~~~~~~h~~~V~~l~fs~ 350 (587)
....+..|..++.+-+|+|+ |.++++|+.|..|+|.|+.. ....++++..|...|+++.|+|
T Consensus 104 Et~ylt~HK~~cR~aafs~D-G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPD-GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred ceEEEeecccceeeeeeCCC-CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 34577899999999999999 99999999999999999831 1256889999999999999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcE---EEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---cc
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQ 424 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~---i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~ 424 (587)
....|++++.|++|+++|+..... .+.|...+...++.|+|.+ .+|++|..-..+++||+++-++...- .+
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsG---efllvgTdHp~~rlYdv~T~QcfvsanPd~q 259 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSG---EFLLVGTDHPTLRLYDVNTYQCFVSANPDDQ 259 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCC---ceEEEecCCCceeEEeccceeEeeecCcccc
Confidence 999999999999999999976533 3445556777888898866 48999999999999999998765543 46
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc-ceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee
Q 007855 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~ 503 (587)
|.+.|+++.+++.+++.++++.||.|+|||--+.+++..+...|.+ .|.+..|..+++|+++.+.|..+++|.+.++..
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 9999999999999999999999999999999999999988877765 588899999999999999999999999998876
Q ss_pred ecccceeccccc---ccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeeEEEE-ecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 504 LNKKKRFAGHIV---AGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 504 ~~~~~~~~~~~~---~~~i~~l~~spdg~~L~sgs~-dG~I~vwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
+.. +.|.-. ...-+...|+....|++.-+. .+.++-||.++...+..+ -+|.+.|..+.-+| ....++|||
T Consensus 340 l~~---YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcs 415 (430)
T KOG0640|consen 340 LKE---YTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCS 415 (430)
T ss_pred EEE---EecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeec
Confidence 633 333211 112234668888888877664 567999999998766555 37999999999999 667899999
Q ss_pred CCCcEEEc
Q 007855 579 WDGLIKYW 586 (587)
Q Consensus 579 ~DG~I~iW 586 (587)
.|-.+++|
T Consensus 416 dD~raRFW 423 (430)
T KOG0640|consen 416 DDFRARFW 423 (430)
T ss_pred ccceeeee
Confidence 99999999
No 46
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=3e-30 Score=248.53 Aligned_cols=286 Identities=19% Similarity=0.329 Sum_probs=237.2
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
.+..+..|.||..+|.||+=+|..-..++||+.||.|+|||+ ....+++++..|.+.|+.|++.. ..+++++.|.+|
T Consensus 55 akPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnl-sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtv 131 (433)
T KOG0268|consen 55 AKPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNL-SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTV 131 (433)
T ss_pred hccchhhccccccccchhhcCcchhhhhhccccCceEEEEeh-hhhhhhheeecccCceeeEEecc--cceEEecCCcce
Confidence 344567889999999999999986689999999999999999 78999999999999999999987 689999999999
Q ss_pred EEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-EEEE
Q 007855 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-RFVT 443 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-~l~s 443 (587)
+.|-++. .++.++.......-+..+.. .+.+++++ -.|.|||.....+++.+.-....|.++.|+|... .|++
T Consensus 132 K~wk~~~-~p~~tilg~s~~~gIdh~~~---~~~FaTcG--e~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas 205 (433)
T KOG0268|consen 132 KQWKIDG-PPLHTILGKSVYLGIDHHRK---NSVFATCG--EQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILAS 205 (433)
T ss_pred eeeeccC-Ccceeeeccccccccccccc---cccccccC--ceeeecccccCCccceeecCCCceeEEecCCCcchheee
Confidence 9999875 46666655554444444432 24566665 4699999999999999988889999999999654 5677
Q ss_pred EECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEE
Q 007855 444 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 523 (587)
|..|++|.|||++...+++.+.. ...-..|+|+|.+-.|++++.|..++.||++... .....+.+|. ..+.+++
T Consensus 206 ~~sDrsIvLyD~R~~~Pl~KVi~--~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhv--sAV~dVd 279 (433)
T KOG0268|consen 206 CASDRSIVLYDLRQASPLKKVIL--TMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHV--SAVMDVD 279 (433)
T ss_pred eccCCceEEEecccCCccceeee--eccccceecCccccceeeccccccceehhhhhhc--ccchhhcccc--eeEEEec
Confidence 77999999999999998887753 3456789999988889999999999999998643 3456677784 5689999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 524 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 524 ~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
|||.|+-+++|+.|.+|+||.++.+...-.... --..|.++.|+. +..++++||.|+.|++|
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSM-DSKYIISGSDDGNVRLW 342 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEec-cccEEEecCCCcceeee
Confidence 999999999999999999999987754322211 124699999999 78899999999999999
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=6.7e-28 Score=242.16 Aligned_cols=293 Identities=16% Similarity=0.275 Sum_probs=243.2
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe-eeEEEcccCCceeeEEEecCCCeEEEEeCC--Ce
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK-CMRTYMGHSKAVRDISFCNDGTKFLTASYD--KN 363 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D--g~ 363 (587)
..+..+.+|...++-.+|+|. |.++|||...|+|+|||...... +...++...++|.+|+|+.++++|++.+.. +.
T Consensus 50 ~~~~iYtEH~~~vtVAkySPs-G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerf 128 (603)
T KOG0318|consen 50 ASVDIYTEHAHQVTVAKYSPS-GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERF 128 (603)
T ss_pred cceeeeccccceeEEEEeCCC-ceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccce
Confidence 346788999999999999999 99999999999999999955343 445677788999999999999999988753 33
Q ss_pred EEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 364 IKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
.+++-.++|..+..+..+. ....+.|.| .....+++|+.|+.|.+|+=.--+...++..|..-|+|+.|+|+|.+|+
T Consensus 129 g~~F~~DSG~SvGei~GhSr~ins~~~Kp--sRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fa 206 (603)
T KOG0318|consen 129 GHVFLWDSGNSVGEITGHSRRINSVDFKP--SRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFA 206 (603)
T ss_pred eEEEEecCCCccceeeccceeEeeeeccC--CCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEE
Confidence 3444444666666665443 334556665 4557899999999999998877778888889999999999999999999
Q ss_pred EEECCCCEEEEECCCCeEEEEee--cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
+++.||.|.+||-.++..+..+. .+|.+.|.+++|+|++..|++++.|.+++|||+.+...+..... ... ......
T Consensus 207 t~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~-~~~-v~dqqv 284 (603)
T KOG0318|consen 207 TAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPM-GST-VEDQQV 284 (603)
T ss_pred EecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeec-CCc-hhceEE
Confidence 99999999999999999888876 37999999999999999999999999999999988755543322 111 123333
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+.|- ...|++.+.+|.|.+++...+..+..+.+|...|+++..+| ++.+|++|+.||.|.-||
T Consensus 285 G~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~-d~~~i~SgsyDG~I~~W~ 348 (603)
T KOG0318|consen 285 GCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSP-DGKTIYSGSYDGHINSWD 348 (603)
T ss_pred EEEEe--CCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcC-CCCEEEeeccCceEEEEe
Confidence 45564 66899999999999999999999999999999999999999 679999999999999996
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=99.97 E-value=1.6e-30 Score=253.76 Aligned_cols=255 Identities=20% Similarity=0.327 Sum_probs=215.7
Q ss_pred CcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-CCceeeEEEecCCCeEEEE
Q 007855 280 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTA 358 (587)
Q Consensus 280 ~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs~dg~~l~s~ 358 (587)
.|+...+..-..++.|...|.++.|+++ +.+++||+.+|.|++|+. ....+..+..| ...|++++|+|+...|++|
T Consensus 122 LWNg~~fnFEtilQaHDs~Vr~m~ws~~-g~wmiSgD~gG~iKyWqp--nmnnVk~~~ahh~eaIRdlafSpnDskF~t~ 198 (464)
T KOG0284|consen 122 LWNGTSFNFETILQAHDSPVRTMKWSHN-GTWMISGDKGGMIKYWQP--NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTC 198 (464)
T ss_pred EecCceeeHHHHhhhhcccceeEEEccC-CCEEEEcCCCceEEeccc--chhhhHHhhHhhhhhhheeccCCCCceeEEe
Confidence 3444434444457789999999999999 999999999999999997 44445555554 5999999999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 359 SYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
|.||+|+|||....+....+..+ -.+.++.|+|.. .++++|+.|..|++||.+++.++.++.+|...|..+.|+++
T Consensus 199 SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k---gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n 275 (464)
T KOG0284|consen 199 SDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK---GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPN 275 (464)
T ss_pred cCCCeEEEEeccCCchhheeccCCCCcceeccCCcc---ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCC
Confidence 99999999999988877777544 356688888854 58999999999999999999999999999999999999999
Q ss_pred CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccc
Q 007855 438 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
+++|+++|.|..++++|+++.+.+..+. .|...++++.|+| ...+|.+|+.||.|..|.+.....+. ..++.+.
T Consensus 276 ~N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~----~i~~AHd 350 (464)
T KOG0284|consen 276 GNWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG----EIPPAHD 350 (464)
T ss_pred CCeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEecccccccc----CCCcccc
Confidence 9999999999999999999777666554 5999999999999 56789999999999999987433332 1223336
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
..|.+++|+|-|.+|++|+.|..+++|.-
T Consensus 351 ~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 351 GEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred cceeeeeccccceeEeecCCCcceeeecc
Confidence 78999999999999999999999999974
No 49
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=2.7e-28 Score=261.58 Aligned_cols=279 Identities=23% Similarity=0.445 Sum_probs=231.8
Q ss_pred ccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC
Q 007855 249 VEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN 328 (587)
Q Consensus 249 ~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~ 328 (587)
+.....+.+....+..++.|....... .+.+.+.+|...|++++|+|+ +.++++|+.|++|+|||+..
T Consensus 167 fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~l~~h~~~v~~~~fs~d-~~~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 167 FSPDGRALAAASSDGLIRIWKLEGIKS-----------NLLRELSGHTRGVSDVAFSPD-GSYLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred EcCCCCeEEEccCCCcEEEeecccccc-----------hhhccccccccceeeeEECCC-CcEEEEecCCceEEEeeccC
Confidence 344445556666677777776522111 366777999999999999999 89999999999999999966
Q ss_pred CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCc
Q 007855 329 SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 329 ~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
.+.+++++.+|...|++++|+|+|+++++|+.|++|+|||+++++++..+..+.. +.+++|.+++ ++|++++.|+.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~---~~l~s~s~d~~ 311 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDG---NLLVSASYDGT 311 (456)
T ss_pred CCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCC---CEEEEcCCCcc
Confidence 6799999999999999999999999999999999999999999999999987765 4456666654 68999999999
Q ss_pred EEEEeCCCCc--EEEEEccCCCC--eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc--ceeEEEEeCCC
Q 007855 408 IVQWDMNTKE--ITQEYDQHLGA--VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHPNT 481 (587)
Q Consensus 408 I~iwD~~t~~--~~~~~~~h~~~--I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--~i~~i~~sp~g 481 (587)
|++||+.++. ++..+..+... ++++.|+|++.+|++++.|+.+++||+........+...... .+.+...++.+
T Consensus 312 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (456)
T KOG0266|consen 312 IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGG 391 (456)
T ss_pred EEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCC
Confidence 9999999998 56677666655 999999999999999999999999999998888777653333 45556667899
Q ss_pred CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCC
Q 007855 482 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 546 (587)
Q Consensus 482 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs--~dG~I~vwd~~ 546 (587)
.++++|+.|+.|.+|++.++..+ ..+.+|. ...+..+.++|...++++++ .|+.|++|...
T Consensus 392 ~~i~sg~~d~~v~~~~~~s~~~~---~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 392 KLIYSGSEDGSVYVWDSSSGGIL---QRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CeEEEEeCCceEEEEeCCccchh---hhhcCCC-CCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99999999999999999875444 4455554 46678899999999999998 78889999753
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=6.2e-28 Score=224.72 Aligned_cols=286 Identities=21% Similarity=0.354 Sum_probs=227.1
Q ss_pred cCCCCCCCCcccccc-ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEE-cCCCCCeEEEEEccCCCcEEEEE
Q 007855 238 KGNAGGEKGEHVEDK-STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSA 315 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~-~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl-~gH~~~V~~l~~sp~~g~~L~sg 315 (587)
.++.++....+..+. ..++++.+.|..+|.|-....+. ..+...+ .+|+..|.+++|+|. |++|++|
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----------~~ck~vld~~hkrsVRsvAwsp~-g~~La~a 79 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----------WTCKTVLDDGHKRSVRSVAWSPH-GRYLASA 79 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----------EEEEEeccccchheeeeeeecCC-CcEEEEe
Confidence 344445555555555 67889999999999997664221 2344444 379999999999999 9999999
Q ss_pred eCCCeEEEEecC-CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC---cEEEEeecC-CcceEEEEc
Q 007855 316 GMDTKVKIWDVF-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTG-KIPYVVKLN 390 (587)
Q Consensus 316 s~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~---~~i~~~~~~-~~~~~~~~~ 390 (587)
|.|.++.||.-. ...+++.++.||...|.|++|+++|++||+|+.|+.|-||.+..+ +++..++.+ +.+..+.|+
T Consensus 80 SFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WH 159 (312)
T KOG0645|consen 80 SFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWH 159 (312)
T ss_pred eccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEc
Confidence 999999999762 233889999999999999999999999999999999999999755 355555543 445678888
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCC---CCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~---t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 467 (587)
|.. .+|++++.|.+|++|+-. .-.+++++.+|...|.+++|.+.|..|+++++|++|+||-+.. .+...
T Consensus 160 Pt~---dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~-----~~~~~ 231 (312)
T KOG0645|consen 160 PTE---DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYT-----DLSGM 231 (312)
T ss_pred CCc---ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeecc-----Ccchh
Confidence 855 489999999999999876 3368999999999999999999999999999999999998652 23335
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee---eccc-ceecccccccceEEEEEcCC-CCEEEEEcCCCcEEE
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKK-KRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWF 542 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~---~~~~-~~~~~~~~~~~i~~l~~spd-g~~L~sgs~dG~I~v 542 (587)
|...+..+.|. ...|++++.|+.|++|....... .... +....| ...|.++.|.|. ..+|++|+.||.|++
T Consensus 232 ~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aH--e~dVNsV~w~p~~~~~L~s~~DDG~v~~ 307 (312)
T KOG0645|consen 232 HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAH--EVDVNSVQWNPKVSNRLASGGDDGIVNF 307 (312)
T ss_pred cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhccc--ccccceEEEcCCCCCceeecCCCceEEE
Confidence 77788999998 55899999999999997653211 1111 112223 457899999995 779999999999999
Q ss_pred EeCC
Q 007855 543 WDWK 546 (587)
Q Consensus 543 wd~~ 546 (587)
|.+.
T Consensus 308 W~l~ 311 (312)
T KOG0645|consen 308 WELE 311 (312)
T ss_pred EEec
Confidence 9864
No 51
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.2e-28 Score=261.12 Aligned_cols=252 Identities=21% Similarity=0.429 Sum_probs=211.4
Q ss_pred ceEEEEc-CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-------------------------------------
Q 007855 287 RLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN------------------------------------- 328 (587)
Q Consensus 287 ~~i~tl~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------------------------------------- 328 (587)
...+.+. .|.+.|.++.|+++ |+|||+||.||.|+||.+..
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~D-GKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~ 335 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHD-GKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR 335 (712)
T ss_pred EEeeccccccCCcEEEEEeCCC-CceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence 3455666 89999999999999 99999999999999998733
Q ss_pred ----------------------CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceE
Q 007855 329 ----------------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV 386 (587)
Q Consensus 329 ----------------------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~ 386 (587)
..++++.|.||.+.|.+|.|+.+ .+|+++|.|.+|+||++....|+..|.+...++|
T Consensus 336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTc 414 (712)
T KOG0283|consen 336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTC 414 (712)
T ss_pred ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEE
Confidence 01234456799999999999965 5899999999999999999999999999999999
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec
Q 007855 387 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 387 ~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 466 (587)
++|+|.++ ++|++|+-||+|+||++...+.+.-...+ .-|++++|.|+|+..++|+.+|.+++|+....+.......
T Consensus 415 VaFnPvDD--ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I 491 (712)
T KOG0283|consen 415 VAFNPVDD--RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI 491 (712)
T ss_pred EEecccCC--CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE
Confidence 99999876 79999999999999999988877665544 8899999999999999999999999999987665544321
Q ss_pred C-------CCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC
Q 007855 467 P-------HMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 538 (587)
Q Consensus 467 ~-------~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG 538 (587)
. ....|+.+.+.|.. ..|++.+.|..|+|||+++...+.. |+|..+...-....|+.||++|++++.|.
T Consensus 492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~K---fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs 568 (712)
T KOG0283|consen 492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHK---FKGFRNTSSQISASFSSDGKHIVSASEDS 568 (712)
T ss_pred eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhh---hcccccCCcceeeeEccCCCEEEEeecCc
Confidence 1 12379999999854 4588889999999999977665544 44444444445689999999999999999
Q ss_pred cEEEEeCC
Q 007855 539 KCWFWDWK 546 (587)
Q Consensus 539 ~I~vwd~~ 546 (587)
.|++|+..
T Consensus 569 ~VYiW~~~ 576 (712)
T KOG0283|consen 569 WVYIWKND 576 (712)
T ss_pred eEEEEeCC
Confidence 99999973
No 52
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=4.7e-28 Score=251.95 Aligned_cols=298 Identities=21% Similarity=0.339 Sum_probs=241.7
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
........++.||...|+++.|... |..|+|||.|+.|.+||+ -...-+..+.||...|+.+-|..+.++|+++|.|+
T Consensus 94 ~~s~~~~~tfngHK~AVt~l~fd~~-G~rlaSGskDt~IIvwDl-V~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs 171 (888)
T KOG0306|consen 94 LESEEILITFNGHKAAVTTLKFDKI-GTRLASGSKDTDIIVWDL-VGEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDS 171 (888)
T ss_pred cCCCceeeeecccccceEEEEEccc-CceEeecCCCccEEEEEe-ccceeeEEeecchHHHhHHhccCCCeEEEEeccCc
Confidence 3334567899999999999999999 999999999999999999 56677788999999999999999889999999999
Q ss_pred eEEEEECCCCcEEEEeec--------------------------------------------------------------
Q 007855 363 NIKYWDTETGQVIRTFST-------------------------------------------------------------- 380 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~-------------------------------------------------------------- 380 (587)
.|++||+++..|..+.-.
T Consensus 172 ~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~ 251 (888)
T KOG0306|consen 172 MIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLV 251 (888)
T ss_pred eEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEe
Confidence 999999987554433110
Q ss_pred --------------------------------------------------------------------CCcceEEEEccC
Q 007855 381 --------------------------------------------------------------------GKIPYVVKLNPD 392 (587)
Q Consensus 381 --------------------------------------------------------------------~~~~~~~~~~~~ 392 (587)
......+.+.+.
T Consensus 252 ~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~ 331 (888)
T KOG0306|consen 252 TDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPS 331 (888)
T ss_pred ecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEec
Confidence 000000000000
Q ss_pred CC-------------------------------------------------CCcEEEEEeCCCcEEEEeCCCCcEEEEEc
Q 007855 393 DD-------------------------------------------------KQNILLAGMSDKKIVQWDMNTKEITQEYD 423 (587)
Q Consensus 393 ~~-------------------------------------------------~~~~l~sg~~dg~I~iwD~~t~~~~~~~~ 423 (587)
+. ..+.++..+..+.|++|+..+.++++++.
T Consensus 332 ~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~ 411 (888)
T KOG0306|consen 332 GGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTIT 411 (888)
T ss_pred CCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEec
Confidence 00 11235555667899999999999999986
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee
Q 007855 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~ 503 (587)
. +.+.+..|.|.++++++|...|.+.+||+.....+..+. .|.+.|.+++.+|++..+++|+.|.+|++||..-...
T Consensus 412 ~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~ 488 (888)
T KOG0306|consen 412 C--GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVS 488 (888)
T ss_pred c--ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEec
Confidence 4 489999999999999999999999999999888887775 6999999999999999999999999999999642111
Q ss_pred -------ecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 504 -------LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 504 -------~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
.-.+..-..-.....|.++.+||||+||+++--|.+|+||-+.+.+....+.+|.-||.|+..+| +..+++|
T Consensus 489 ~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivT 567 (888)
T KOG0306|consen 489 VPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVT 567 (888)
T ss_pred cCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEe
Confidence 00000001112245688899999999999999999999999999999999999999999999999 8889999
Q ss_pred EECCCcEEEc
Q 007855 577 CGWDGLIKYW 586 (587)
Q Consensus 577 ~g~DG~I~iW 586 (587)
||.|.+|+||
T Consensus 568 gSADKnVKiW 577 (888)
T KOG0306|consen 568 GSADKNVKIW 577 (888)
T ss_pred ccCCCceEEe
Confidence 9999999999
No 53
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=99.97 E-value=2.4e-28 Score=230.43 Aligned_cols=284 Identities=22% Similarity=0.356 Sum_probs=241.8
Q ss_pred ccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 237 DKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
..++.+.+....+.+..++.+++..|.++-.|..-.. .+-..+++||+++|..+.|.++ +..|+|++
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd------------ceN~~~lkgHsgAVM~l~~~~d-~s~i~S~g 109 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD------------CENFWVLKGHSGAVMELHGMRD-GSHILSCG 109 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc------------ccceeeeccccceeEeeeeccC-CCEEEEec
Confidence 3466666777778888899999999999999965432 2334577899999999999999 99999999
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
.|.+|+.||+ .++++++.+++|...|+.+.-+.-|. ++.+++.||+++|||+++...++++........+.|....+
T Consensus 110 tDk~v~~wD~-~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~- 187 (338)
T KOG0265|consen 110 TDKTVRGWDA-ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSD- 187 (338)
T ss_pred CCceEEEEec-ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEeccccc-
Confidence 9999999999 89999999999999999999655454 56688899999999999999999998888888888877654
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC----eEEEEeecCCC--
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP----VVIKYISEPHM-- 469 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~----~~~~~~~~~~~-- 469 (587)
.+++|+-|+.|++||++.+.....+.+|.+.|+.+..+++|.++++-+.|.+|++||++-. .+++.+. .+.
T Consensus 188 --qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~-g~~hn 264 (338)
T KOG0265|consen 188 --QVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQ-GHIHN 264 (338)
T ss_pred --ceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEee-cchhh
Confidence 5999999999999999999999999999999999999999999999999999999999753 2233332 222
Q ss_pred --cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007855 470 --HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 470 --~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vw 543 (587)
.....++|+|++..+.+|+.|..+++||......+ ..++|| .+.|.+++|+|...+|.+++.|.+|++=
T Consensus 265 feknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~l---yklpGh--~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 265 FEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRIL---YKLPGH--YGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred hhhhcceeeccCCCCccccccccceEEEeecccccEE---EEcCCc--ceeEEEeeecCCCcEEEEeccCceeEee
Confidence 23567899999999999999999999998765433 557778 6789999999999999999999999873
No 54
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.1e-28 Score=225.29 Aligned_cols=243 Identities=23% Similarity=0.405 Sum_probs=207.4
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
+.++.+..|.++|+.+.|+-+|+|.++|+.|++|++|+...|.+++++..+ +.+.-.....++ ..|++|+.|..|.
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn---skf~s~GgDk~v~ 84 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN---SKFASCGGDKAVQ 84 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc---cccccCCCCceEE
Confidence 456678899999999999999999999999999999999999999999754 344445555544 3599999999999
Q ss_pred EEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC--eEEEEeecCCCcceeEEEEeCCCCEEEEE
Q 007855 410 QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 410 iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
+||+.+|+.++.+.+|.+.|+.+.|+.+...+++|+.|.+|++||.++. ++++.+. .....|.++.+. +..|++|
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~--~heIvaG 161 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA--EHEIVAG 161 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec--ccEEEee
Confidence 9999999999999999999999999999999999999999999999764 5565554 356678887775 6689999
Q ss_pred ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCE--EEEE
Q 007855 488 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC--IGCE 565 (587)
Q Consensus 488 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V--~~v~ 565 (587)
+.||+++.||++.+.... .+- ..+|++++||++++.+++++.++.|++.|-.+|+++...++|...- ..++
T Consensus 162 S~DGtvRtydiR~G~l~s---Dy~----g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~ 234 (307)
T KOG0316|consen 162 SVDGTVRTYDIRKGTLSS---DYF----GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCC 234 (307)
T ss_pred ccCCcEEEEEeecceeeh---hhc----CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeee
Confidence 999999999999875432 222 4568899999999999999999999999999999999999998743 3455
Q ss_pred EcCCCCCEEEEEECCCcEEEcC
Q 007855 566 WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 566 ~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++. ....+++|+.||.|.+||
T Consensus 235 l~q-sdthV~sgSEDG~Vy~wd 255 (307)
T KOG0316|consen 235 LNQ-SDTHVFSGSEDGKVYFWD 255 (307)
T ss_pred ecc-cceeEEeccCCceEEEEE
Confidence 555 556899999999999997
No 55
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=3.8e-28 Score=256.02 Aligned_cols=307 Identities=19% Similarity=0.378 Sum_probs=239.3
Q ss_pred eeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceee
Q 007855 266 RSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRD 345 (587)
Q Consensus 266 r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~ 345 (587)
|-|+...--...+..|.|-=..+++.|.+|.++|..|+|+|+ +.+++||+.|-.|++|+. ...+|+.++.||-+-|+.
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~-qplFVSGGDDykIkVWnY-k~rrclftL~GHlDYVRt 98 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPT-QPLFVSGGDDYKIKVWNY-KTRRCLFTLLGHLDYVRT 98 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCC-CCeEEecCCccEEEEEec-ccceehhhhccccceeEE
Confidence 344444444444445566667789999999999999999999 999999999999999999 899999999999999999
Q ss_pred EEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-------
Q 007855 346 ISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------- 417 (587)
Q Consensus 346 l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~------- 417 (587)
+.|++.-.+++|+|.|.+|+||++.+.+++..+..+ +.+.|..|+|.. .++++++-|.+|++||+..-+
T Consensus 99 ~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE---DlIVSaSLDQTVRVWDisGLRkk~~~pg 175 (1202)
T KOG0292|consen 99 VFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE---DLIVSASLDQTVRVWDISGLRKKNKAPG 175 (1202)
T ss_pred eeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc---ceEEEecccceEEEEeecchhccCCCCC
Confidence 999999999999999999999999999999999754 445566677644 489999999999999985210
Q ss_pred ----------------------EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEE-EeecCCCcceeE
Q 007855 418 ----------------------ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK-YISEPHMHSMPS 474 (587)
Q Consensus 418 ----------------------~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~i~~ 474 (587)
..+.+.+|...|+-++|+|.-..|++|++|+.|++|.+...+... ..-.+|...|.+
T Consensus 176 ~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVss 255 (1202)
T KOG0292|consen 176 SLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSS 255 (1202)
T ss_pred CchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcce
Confidence 224567899999999999999999999999999999987654332 223479999999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCc---------------
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK--------------- 539 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~--------------- 539 (587)
+-|+|...++++.+.|+.|++||+..+..+...+. . ......++-+|..+++++|-..|.
T Consensus 256 vlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrr---e--ndRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~ 330 (1202)
T KOG0292|consen 256 VLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRR---E--NDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVN 330 (1202)
T ss_pred EEecCccceeEecCCCccEEEEecccccceeeeec---c--CCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEc
Confidence 99999999999999999999999987766544332 2 244556888888888887765553
Q ss_pred -----------EEEEeCCCCe--eEEEEecC---CCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 540 -----------CWFWDWKSCK--VFRTLKCH---EGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 540 -----------I~vwd~~t~~--~~~~l~~h---~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
|+.+|+.+.+ .+..++.. ..++.++.++|..+..|++...|+.
T Consensus 331 ~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~ 389 (1202)
T KOG0292|consen 331 GNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNG 389 (1202)
T ss_pred CCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCC
Confidence 2222332221 12223222 2578889999976666666555543
No 56
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8e-27 Score=222.34 Aligned_cols=287 Identities=18% Similarity=0.356 Sum_probs=235.7
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC--CCeE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY--DKNI 364 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~--Dg~I 364 (587)
++.+.|..-.+.|++|.|+++ |.+|++++.|.+|+|||. .+++.++++..+.-.|..++|......++.++. |.+|
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~-G~~litss~dDsl~LYd~-~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDD-GLLLITSSEDDSLRLYDS-LSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI 82 (311)
T ss_pred ccccccccCCCceeEEEecCC-CCEEEEecCCCeEEEEEc-CCCceeeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence 344556667788999999999 999999999999999999 899999999999899999999988888887776 8899
Q ss_pred EEEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEE
Q 007855 365 KYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s 443 (587)
+..++.+.+.++.|..+.. +..++.+|-+ ..+++++.|++|++||++..++...+. ...-..++|.|+|-+||+
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~---d~FlS~S~D~tvrLWDlR~~~cqg~l~--~~~~pi~AfDp~GLifA~ 157 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKD---DTFLSSSLDKTVRLWDLRVKKCQGLLN--LSGRPIAAFDPEGLIFAL 157 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCC---CeEEecccCCeEEeeEecCCCCceEEe--cCCCcceeECCCCcEEEE
Confidence 9999999999999987654 4567777755 579999999999999999887766654 334445899999999999
Q ss_pred EECCCCEEEEECCCC----eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc-c
Q 007855 444 SSDDKSLRVWEFGIP----VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-Y 518 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~----~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~ 518 (587)
+.....|++||++.- .....+..+.....+.+.|+|+|++|+.++..+.+++.|.-++..+. .+.++.... .
T Consensus 158 ~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~---tfs~~~~~~~~ 234 (311)
T KOG1446|consen 158 ANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS---TFSGYPNAGNL 234 (311)
T ss_pred ecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee---eEeeccCCCCc
Confidence 998889999999863 22233333456778999999999999999999999999988876543 333333333 2
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
-...+|+||+++|++|+.||+|.+|++++++.+..+++ +.+++.++.|+| .-.+++|++ ..+.+|
T Consensus 235 ~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP-~~~mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 235 PLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNP-RYAMFVSAS--SNLVFW 300 (311)
T ss_pred ceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCC-ceeeeeecC--ceEEEE
Confidence 24688999999999999999999999999999999998 788999999999 544555554 467776
No 57
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.96 E-value=5.5e-27 Score=232.87 Aligned_cols=278 Identities=26% Similarity=0.510 Sum_probs=229.1
Q ss_pred CCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEE
Q 007855 243 GEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 322 (587)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 322 (587)
.+......+...+......|...+.|.... .+....+.+|...|.++.|+|+ +.+|++++.||.|+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~-------------~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~ 76 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLET-------------GELLRTLKGHTGPVRDVAASAD-GTYLASGSSDKTIR 76 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeC-------------CCcEEEEecCCcceeEEEECCC-CCEEEEEcCCCeEE
Confidence 333334444445555555566677664433 2356778899999999999999 78999999999999
Q ss_pred EEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEE
Q 007855 323 IWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 323 iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~s 401 (587)
+|++ ..++.+..+..|...|.++.|++++.++++++.++.|.+||+.+++.+..+..+ ..+.++.+.+. +.++++
T Consensus 77 i~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~ 152 (289)
T cd00200 77 LWDL-ETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPD---GTFVAS 152 (289)
T ss_pred EEEc-CcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCc---CCEEEE
Confidence 9999 566788888899999999999999888888888999999999988888888733 34667777775 356777
Q ss_pred EeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC
Q 007855 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT 481 (587)
Q Consensus 402 g~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g 481 (587)
++.++.|++||+++++.+..+..|...|.++.|+|+++.+++++.++.|++||++....+..+. .+...+.++.|+|++
T Consensus 153 ~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~ 231 (289)
T cd00200 153 SSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDG 231 (289)
T ss_pred EcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCC
Confidence 7779999999999999888998999999999999999999999999999999999877776653 467789999999998
Q ss_pred CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 482 NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 482 ~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
.++++++.++.|++|++........ +..| ...+.+++|+|++.+|++++.||.|++|+
T Consensus 232 ~~~~~~~~~~~i~i~~~~~~~~~~~---~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 232 YLLASGSEDGTIRVWDLRTGECVQT---LSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCCcEEEEEcCCceeEEE---cccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8888888899999999987654433 3334 45688899999999999999999999996
No 58
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.96 E-value=4.2e-27 Score=270.17 Aligned_cols=288 Identities=17% Similarity=0.258 Sum_probs=227.1
Q ss_pred ccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEec
Q 007855 247 EHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 326 (587)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 326 (587)
....+...+.++...|..++.|-........ ......+..+.+ ...|.+++|+|..+.+|++++.||+|+|||+
T Consensus 489 i~fs~dg~~latgg~D~~I~iwd~~~~~~~~-----~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~ 562 (793)
T PLN00181 489 IGFDRDGEFFATAGVNKKIKIFECESIIKDG-----RDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQVWDV 562 (793)
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCcccccc-----cccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEEEEC
Confidence 3455566777888889999999653211000 001112334444 4689999999876889999999999999999
Q ss_pred CCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC
Q 007855 327 FNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 327 ~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 405 (587)
.+++.+..+.+|...|++++|+| ++.+|++|+.|++|++||+.++..+..+.....+.++.|.+ ..+.+|++|+.|
T Consensus 563 -~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~--~~g~~latgs~d 639 (793)
T PLN00181 563 -ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPS--ESGRSLAFGSAD 639 (793)
T ss_pred -CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeC--CCCCEEEEEeCC
Confidence 67888999999999999999997 78999999999999999999999998887766666666654 345789999999
Q ss_pred CcEEEEeCCCCc-EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC------eEEEEeecCCCcceeEEEEe
Q 007855 406 KKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP------VVIKYISEPHMHSMPSISLH 478 (587)
Q Consensus 406 g~I~iwD~~t~~-~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~------~~~~~~~~~~~~~i~~i~~s 478 (587)
|.|++||+++.. .+..+.+|...|.++.|. ++..|++++.|++|++||++.. ..+..+ ..|...+.+++|+
T Consensus 640 g~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~-~gh~~~i~~v~~s 717 (793)
T PLN00181 640 HKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSF-MGHTNVKNFVGLS 717 (793)
T ss_pred CeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEE-cCCCCCeeEEEEc
Confidence 999999998865 467788999999999997 6789999999999999999743 344444 3578889999999
Q ss_pred CCCCEEEEEECCCeEEEEEcCCceeecccc-----ee---cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 479 PNTNWLAAQSLDNQILIYSTRERFQLNKKK-----RF---AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 479 p~g~~l~~~s~dg~I~iwd~~~~~~~~~~~-----~~---~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
|++.+|++|+.|+.|++|+......+.... .. ........|.+++|+|++.+|++|+.+|.|+||++
T Consensus 718 ~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 718 VSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999999999999976542221110 00 01112456889999999999999999999999986
No 59
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.5e-28 Score=242.13 Aligned_cols=286 Identities=18% Similarity=0.307 Sum_probs=232.3
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-----------------EEE-cccCCceeeEEEec
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-----------------RTY-MGHSKAVRDISFCN 350 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-----------------~~~-~~h~~~V~~l~fs~ 350 (587)
+..+..|.-+|+||+++|+ ..++++++.+|+|.-|++ .+++.. ..- .+|...|.+++.++
T Consensus 135 ~~~~~~H~~s~~~vals~d-~~~~fsask~g~i~kw~v-~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPD-DKRVFSASKDGTILKWDV-LTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeeccccCcceEEEeecc-ccceeecCCCcceeeeeh-hcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 5678899999999999999 899999999999999998 344321 011 27889999999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc-eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 429 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I 429 (587)
||++|++|+.|..|.||+.++.+.++.+..+... ..++|... .+-+++++.|+.|++|++.....+.++-+|.+.|
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~g---t~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v 289 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKG---TSELYSASADRSVKVWSIDQLSYVETLYGHQDGV 289 (479)
T ss_pred CCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecC---ccceeeeecCCceEEEehhHhHHHHHHhCCccce
Confidence 9999999999999999999999999998766544 44555443 3569999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce
Q 007855 430 NTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 509 (587)
.+|....-.+.+-+|+.|+++++|++.... +.+..++...+.|++|- +...|++|+.+|.|.+|++....++.....
T Consensus 290 ~~IdaL~reR~vtVGgrDrT~rlwKi~ees--qlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 290 LGIDALSRERCVTVGGRDRTVRLWKIPEES--QLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred eeechhcccceEEeccccceeEEEeccccc--eeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeec
Confidence 999999888888888899999999994443 44445788899999998 456899999999999999987766654433
Q ss_pred eccccc-------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 510 FAGHIV-------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 510 ~~~~~~-------~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~----~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
-.+-.. ..+|++++..|...++++|+.+|.|++|-+..+ .++..+. -.+.|++++|++++..+++.+|
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG 445 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG 445 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence 322221 138999999999999999999999999998876 4555555 6678999999995544666666
Q ss_pred CCCcE
Q 007855 579 WDGLI 583 (587)
Q Consensus 579 ~DG~I 583 (587)
..-.+
T Consensus 446 kEhRl 450 (479)
T KOG0299|consen 446 KEHRL 450 (479)
T ss_pred ccccc
Confidence 55443
No 60
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=225.72 Aligned_cols=281 Identities=20% Similarity=0.346 Sum_probs=228.6
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 373 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~ 373 (587)
-.+.|.+|+|||....+|+.+|.||+||+|++...+..+ +....|.++|.+++|+.+|..+++|+.|+.+++||+.+++
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q 105 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ 105 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC
Confidence 456899999999757788899999999999996655444 3456799999999999999999999999999999999998
Q ss_pred EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEE
Q 007855 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453 (587)
Q Consensus 374 ~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iw 453 (587)
....-.+...+.++.|.+... ..+|++|+.|++|+.||++....+.++. -...+.++... ..+++++..++.|.+|
T Consensus 106 ~~~v~~Hd~pvkt~~wv~~~~-~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv~--~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 106 VSQVAAHDAPVKTCHWVPGMN-YQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADVL--YPMAVVATAERHIAVY 181 (347)
T ss_pred eeeeeecccceeEEEEecCCC-cceeEecccccceeecccCCCCeeeeee-ccceeeehhcc--CceeEEEecCCcEEEE
Confidence 877777777777888877553 4589999999999999999998888775 44667766664 5688999999999999
Q ss_pred ECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccc----c---cceEEEEEc
Q 007855 454 EFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV----A---GYACQVNFS 525 (587)
Q Consensus 454 d~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~---~~i~~l~~s 525 (587)
+++.+ ...+.+..+....+.|+++.++....+.|+-.|.+.|..+..+.+ .....|+.|.. . -.|.+|+|+
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~Fh 260 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFH 260 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEee
Confidence 99665 445556667778899999999998899999999999998877533 22333444431 1 237789999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 526 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 526 pdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
|.-..|+++++||++.+||-.....+...+.|..+|+++.|+..+.-+.++.|.|
T Consensus 261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA~gYD 315 (347)
T KOG0647|consen 261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYALGYD 315 (347)
T ss_pred cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEEeecc
Confidence 9999999999999999999988888888899999999999999444344555555
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2.6e-27 Score=253.98 Aligned_cols=276 Identities=24% Similarity=0.430 Sum_probs=236.4
Q ss_pred EEEcC-CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEE-EcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 290 HTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 290 ~tl~g-H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
..+.+ |...|.+..|. ..++++++.|++|++|+. ..+..+.. +.+|.+.|.+++|...+.+|++|+.|.+++||
T Consensus 201 ~~~~~~~~~~~~~~q~~---~~~~~~~s~~~tl~~~~~-~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvW 276 (537)
T KOG0274|consen 201 KVLLGTDDHVVLCLQLH---DGFFKSGSDDSTLHLWDL-NNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVW 276 (537)
T ss_pred eeecccCcchhhhheee---cCeEEecCCCceeEEeec-ccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeE
Confidence 34444 66789999998 358999999999999999 67777777 99999999999998878899999999999999
Q ss_pred ECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 368 DTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 368 d~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
|..+|++...+..+. .+.++...+ .++++|+.|.+|++|++.++..+..+.+|.++|+++.+. +.++++|+.
T Consensus 277 d~~sg~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~ 349 (537)
T KOG0274|consen 277 DCSTGECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY 349 (537)
T ss_pred ecCCCcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec
Confidence 999999999998443 333444433 468889999999999999999999999999999999997 889999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
|++|++||+.+.++++.+.. |...|.++.+.+. ..+++|+.|+.|++||+.+.. .....+.+|. ..+.. +..
T Consensus 350 d~~v~VW~~~~~~cl~sl~g-H~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~--~~v~~--l~~ 421 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSG-HTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT--SLVSS--LLL 421 (537)
T ss_pred CceEEEEEhhhceeeeeecC-CcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc--ccccc--ccc
Confidence 99999999999999998875 9999999988765 899999999999999998873 3345566663 33333 344
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++|++++.||.|++||..+++++..+.+ |.+.|..+.+. ...+++++.||.+++||
T Consensus 422 ~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~d 480 (537)
T KOG0274|consen 422 RDNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWD 480 (537)
T ss_pred ccceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEe
Confidence 688999999999999999999999999999 67888888886 34799999999999997
No 62
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-27 Score=246.63 Aligned_cols=273 Identities=18% Similarity=0.332 Sum_probs=234.0
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee
Q 007855 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 379 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~ 379 (587)
.-+.|+. .+.|+.|. ...|++|+. .++........+...|+++.|+++|.+|++|..+|.|.|||..+.+.+..+.
T Consensus 181 nlldWss--~n~laVal-g~~vylW~~-~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~ 256 (484)
T KOG0305|consen 181 NLLDWSS--ANVLAVAL-GQSVYLWSA-SSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLR 256 (484)
T ss_pred hHhhccc--CCeEEEEe-cceEEEEec-CCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccccc
Confidence 4467774 35666665 457999998 6676665555558999999999999999999999999999999999999998
Q ss_pred cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC
Q 007855 380 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP 458 (587)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~ 458 (587)
.++...+.++.+. ...+.+|+.++.|..+|++..+.... +.+|...|..+.|++++.+|++|+.|+.+.|||....
T Consensus 257 ~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~ 333 (484)
T KOG0305|consen 257 GSHASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSP 333 (484)
T ss_pred CCcCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCc
Confidence 8677776666665 36899999999999999998866555 8899999999999999999999999999999999877
Q ss_pred eEEEEeecCCCcceeEEEEeC-CCCEEEEE--ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEE--
Q 007855 459 VVIKYISEPHMHSMPSISLHP-NTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-- 533 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~s-- 533 (587)
.+...+. .|...|..++|+| ...+||+| +.|+.|++|+..++..+..... ...||.|.|++..+-|++
T Consensus 334 ~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdt------gsQVcsL~Wsk~~kEi~sth 406 (484)
T KOG0305|consen 334 EPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDT------GSQVCSLIWSKKYKELLSTH 406 (484)
T ss_pred cccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEeccccc------CCceeeEEEcCCCCEEEEec
Confidence 7777765 5999999999999 45788886 5789999999998876654433 678999999999876665
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 534 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 534 gs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|..++.|.||++.+.+.+..+.+|...|..++++| ++..|++|+.|.++++|+
T Consensus 407 G~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SP-dg~~i~t~a~DETlrfw~ 459 (484)
T KOG0305|consen 407 GYSENQITLWKYPSMKLVAELLGHTSRVLYLALSP-DGETIVTGAADETLRFWN 459 (484)
T ss_pred CCCCCcEEEEeccccceeeeecCCcceeEEEEECC-CCCEEEEecccCcEEecc
Confidence 45677899999999999999999999999999999 788999999999999996
No 63
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=221.02 Aligned_cols=280 Identities=23% Similarity=0.381 Sum_probs=223.6
Q ss_pred EEEEEccCCCcEEEEEe-------CCCeEEEEecCCCCeeeEEEc--ccCCceeeEEEec-CCCeEEEEeCCCeEEEEEC
Q 007855 300 SAIRFFPKYGHLILSAG-------MDTKVKIWDVFNSGKCMRTYM--GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs-------~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~ 369 (587)
.++.|||--.++|+.+. ..|++.|-++ ...+-+..+. .-.+.+.+++|++ ..+.+++++.||+++|||+
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~-~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~ 90 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEV-TDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL 90 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEec-CCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence 57889986556665542 3689999998 3333333322 3567899999999 4578889999999999996
Q ss_pred CC-CcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-CCCEEEEEEC
Q 007855 370 ET-GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-NNRRFVTSSD 446 (587)
Q Consensus 370 ~t-~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~~~~l~s~s~ 446 (587)
.- ..++..++.+ ..++.+.+.+ .....+++++.|++|++|+....+.++++.+|...|....|+| ..+.|+++|.
T Consensus 91 ~~~s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sg 168 (311)
T KOG0277|consen 91 TMPSKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASG 168 (311)
T ss_pred CCCCcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccC
Confidence 43 3466666543 3344555544 4556788889999999999999999999999999999999998 5678999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
|+.+++||++.+-....+ ..|...+.++.|+. +...|++|+.|+.|++||++.... ++..+.+| .-.|..+.||
T Consensus 169 d~~l~lwdvr~~gk~~~i-~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~--pl~eL~gh--~~AVRkvk~S 243 (311)
T KOG0277|consen 169 DGTLRLWDVRSPGKFMSI-EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRT--PLFELNGH--GLAVRKVKFS 243 (311)
T ss_pred CceEEEEEecCCCceeEE-EeccceeEeecccccCCcEEEecCCCceEEEEehhhccc--cceeecCC--ceEEEEEecC
Confidence 999999999876544444 45888999999987 567899999999999999987542 34556777 4558899999
Q ss_pred CCC-CEEEEEcCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 526 PDG-RFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 526 pdg-~~L~sgs~dG~I~vwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.. .+|++++.|-+++|||...+ .++.+...|+.-|.++.|++..+.++|++|+|+.++||+
T Consensus 244 ph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 244 PHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred cchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 964 57899999999999998754 456667779999999999999999999999999999996
No 64
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=7.6e-27 Score=243.01 Aligned_cols=283 Identities=18% Similarity=0.311 Sum_probs=244.2
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
-++.||+..|.+++++.+ ..+++||+ .+.|+||+. .+.++++++... -+.+..|.|.++++++|...|.+.|+|+
T Consensus 367 i~~~GHR~dVRsl~vS~d-~~~~~Sga-~~SikiWn~-~t~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~k~Gel~vfdl 441 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCVSSD-SILLASGA-GESIKIWNR-DTLKCIRTITCG--YILASKFVPGDRYIVLGTKNGELQVFDL 441 (888)
T ss_pred eeeccchhheeEEEeecC-ceeeeecC-CCcEEEEEc-cCcceeEEeccc--cEEEEEecCCCceEEEeccCCceEEEEe
Confidence 367799999999999988 55666655 578999999 789999999654 7899999999999999999999999999
Q ss_pred CCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-----Cc--EEEEEc-----cCCCCeeEEEEec
Q 007855 370 ETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KE--ITQEYD-----QHLGAVNTITFVD 436 (587)
Q Consensus 370 ~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-----~~--~~~~~~-----~h~~~I~~i~~sp 436 (587)
.+...+.++..+ ...+.++..|++. -+++|+.|.+|++||..- +. .+..+. .-...|.|+.++|
T Consensus 442 aS~~l~Eti~AHdgaIWsi~~~pD~~---g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Sp 518 (888)
T KOG0306|consen 442 ASASLVETIRAHDGAIWSISLSPDNK---GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSP 518 (888)
T ss_pred ehhhhhhhhhccccceeeeeecCCCC---ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcC
Confidence 999888777643 4567888888764 599999999999999741 11 111111 2457899999999
Q ss_pred CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccc
Q 007855 437 NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
++++|+++--|.+|+||-+++.+....+. +|.-+|.||.++|+++++++||.|..|+||-+.=+.+- +.+-+| .
T Consensus 519 dgk~LaVsLLdnTVkVyflDtlKFflsLY-GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCH---KS~fAH--d 592 (888)
T KOG0306|consen 519 DGKLLAVSLLDNTVKVYFLDTLKFFLSLY-GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCH---KSFFAH--D 592 (888)
T ss_pred CCcEEEEEeccCeEEEEEecceeeeeeec-ccccceeEEeccCCcCeEEeccCCCceEEeccccchhh---hhhhcc--c
Confidence 99999999999999999999988776665 69999999999999999999999999999998766543 445556 5
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..|+++.|-|...++++++.||.|+-||-...+++..+.+|...|++++.+| ++++++|+|.|.+|++|.
T Consensus 593 DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~-~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 593 DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP-NGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcC-CCCeEEeccCCceeEeee
Confidence 6789999999999999999999999999999999999999999999999999 888999999999999994
No 65
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.7e-27 Score=219.79 Aligned_cols=268 Identities=18% Similarity=0.343 Sum_probs=217.4
Q ss_pred ccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc
Q 007855 263 YQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA 342 (587)
Q Consensus 263 ~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~ 342 (587)
..||++++...+.+.+.+ ...+ .-.+++..++|++...+.+++++.||+++|||+.....+++.++.|...
T Consensus 36 G~G~L~ile~~~~~gi~e--------~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E 106 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQE--------CQSY-DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE 106 (311)
T ss_pred cCceEEEEecCCCCCeEE--------EEee-ecccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh
Confidence 356777777654332221 1222 2457899999999989999999999999999997778899999999999
Q ss_pred eeeEEEec-CCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE
Q 007855 343 VRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 420 (587)
Q Consensus 343 V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~ 420 (587)
|.++.|++ .+..++++|.|++|++|+...++.+.+|..+. .++...|+|.. ++++++++.|+.+++||++..-...
T Consensus 107 V~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~--~nlfas~Sgd~~l~lwdvr~~gk~~ 184 (311)
T KOG0277|consen 107 VYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI--PNLFASASGDGTLRLWDVRSPGKFM 184 (311)
T ss_pred eEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC--CCeEEEccCCceEEEEEecCCCcee
Confidence 99999998 67788899999999999999999999987654 34566777754 5899999999999999999765555
Q ss_pred EEccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCC-CCEEEEEECCCeEEEEEc
Q 007855 421 EYDQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYST 498 (587)
Q Consensus 421 ~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~ 498 (587)
.+..|...|.|+.|+. +.+.++||+.|+.|++||++..+.......+|...|..+.|+|. ...|++++-|-+++|||.
T Consensus 185 ~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 185 SIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEeccc
Confidence 5889999999999996 56678999999999999998765443334679999999999996 468999999999999998
Q ss_pred CCceeecccceecccccccceEEEEEcC-CCCEEEEEcCCCcEEEEeC
Q 007855 499 RERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~L~sgs~dG~I~vwd~ 545 (587)
...... +....-| ...++.+.||+ ++.++|+.+.|+.++||+-
T Consensus 265 ~~~ds~--~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSA--IETVDHH--TEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhh--hhhhhcc--ceEEeccccccccCceeeecccccceeeecc
Confidence 644322 2233333 56788899988 6779999999999999983
No 66
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=7.5e-27 Score=233.31 Aligned_cols=277 Identities=20% Similarity=0.300 Sum_probs=232.4
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
...|++|+|+|...+-+|+.+. -.|.||+. .+....+++......|.+++|..||++|++|...|.|+|+|+.+...+
T Consensus 26 ~~~vssl~fsp~~P~d~aVt~S-~rvqly~~-~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iL 103 (487)
T KOG0310|consen 26 HNSVSSLCFSPKHPYDFAVTSS-VRVQLYSS-VTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVIL 103 (487)
T ss_pred cCcceeEecCCCCCCceEEecc-cEEEEEec-chhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHH
Confidence 3579999999986766666654 57999998 677777778888899999999999999999999999999997765566
Q ss_pred EEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-EEEEEECCCCEEEE
Q 007855 376 RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-RFVTSSDDKSLRVW 453 (587)
Q Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-~l~s~s~Dg~I~iw 453 (587)
+.+..+ .+...+.|++.+. .+|++|+.|+.+++||+.+......+.+|.+.|.|.+|+|... .+++||.||.|++|
T Consensus 104 R~~~ah~apv~~~~f~~~d~--t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~ 181 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDN--TMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLW 181 (487)
T ss_pred HHHhhccCceeEEEecccCC--eEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEE
Confidence 666544 4455777777544 6899999999999999999987668999999999999999655 78999999999999
Q ss_pred ECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE
Q 007855 454 EFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 454 d~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
|++.. ..+..+ .|..+|..+.+-|.|..|++++ .+.|++||+.++.+.. .....| ...|+|+++..++..|+
T Consensus 182 DtR~~~~~v~el--nhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll--~~~~~H--~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 182 DTRSLTSRVVEL--NHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLL--TSMFNH--NKTVTCLRLASDSTRLL 254 (487)
T ss_pred EeccCCceeEEe--cCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceeh--hhhhcc--cceEEEEEeecCCceEe
Confidence 99987 444444 6899999999999999999887 6679999998665442 222234 46799999999999999
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 533 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 533 sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
+|+-||.|++||+.+.+.+..+. ..++|.+|+.+| ++..++.|..+|.+.+
T Consensus 255 S~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~-dd~t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 255 SGSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP-DDQTVVIGMSNGLVSI 305 (487)
T ss_pred ecccccceEEEEccceEEEEeee-cccceeeEEecC-CCceEEEecccceeee
Confidence 99999999999999999998887 677899999999 7778999999998754
No 67
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.95 E-value=1.1e-26 Score=218.27 Aligned_cols=292 Identities=19% Similarity=0.326 Sum_probs=235.1
Q ss_pred cCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC-----------eee---EEEcccCCceeeEEEec-CCCeEEE
Q 007855 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG-----------KCM---RTYMGHSKAVRDISFCN-DGTKFLT 357 (587)
Q Consensus 293 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-----------~~~---~~~~~h~~~V~~l~fs~-dg~~l~s 357 (587)
+.|.++|++|...+..|+++++|+.||.|.|||+.+.. +++ ..-.+|.-.|.++.|-| |...|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46899999999999989999999999999999995432 111 01136888999999999 7778999
Q ss_pred EeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 358 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
++.|.+++|||+.+.+....|.....++..+++|-.....++++|..+-.|++.|+.+|.....+.+|.+.|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999999999999999999999998877788999999999999999999999999999999999999998
Q ss_pred CCE-EEEEECCCCEEEEECCCC-eEEEEe-------------ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 438 NRR-FVTSSDDKSLRVWEFGIP-VVIKYI-------------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 438 ~~~-l~s~s~Dg~I~iwd~~~~-~~~~~~-------------~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
..+ |++|+.||.|++||++.. .+...+ ...|.+.+..++|..++.++++++.|..+++|+..++.
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 876 788999999999999754 222221 23467789999999999999999999999999987764
Q ss_pred eecccceecccc-cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 503 QLNKKKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 503 ~~~~~~~~~~~~-~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
..........|. ..+....+. +.+...++---.++.+.++.+-.+..+..+..|-..|.++++-| +-..+.++..|+
T Consensus 280 ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~-~fq~~~tg~~d~ 357 (397)
T KOG4283|consen 280 NTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYRP-DFEQCFTGDMNG 357 (397)
T ss_pred ccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecccceeeEEeecC-chhhhhccccCC
Confidence 321111111110 011111122 33333444344558999999999999999999988999999998 666799999999
Q ss_pred cEEEc
Q 007855 582 LIKYW 586 (587)
Q Consensus 582 ~I~iW 586 (587)
.|..|
T Consensus 358 ni~~w 362 (397)
T KOG4283|consen 358 NIYMW 362 (397)
T ss_pred ccccc
Confidence 99988
No 68
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=1.6e-25 Score=239.83 Aligned_cols=264 Identities=16% Similarity=0.197 Sum_probs=201.4
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-------------EEEcccCCceeeEEEec-CCCeEEEEeCCC
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-------------RTYMGHSKAVRDISFCN-DGTKFLTASYDK 362 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-------------~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg 362 (587)
..|.....+++ +..+++++.+..+..|+. ..+..+ ..+.+|.+.|++++|+| ++.+|++|+.|+
T Consensus 21 ~~i~~~~~~~d-~~~~~~~n~~~~a~~w~~-~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg 98 (493)
T PTZ00421 21 LNVTPSTALWD-CSNTIACNDRFIAVPWQQ-LGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG 98 (493)
T ss_pred eccccccccCC-CCCcEeECCceEEEEEec-CCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence 34555555666 556777777777777775 222211 24678999999999999 889999999999
Q ss_pred eEEEEECCCCc-------EEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEE
Q 007855 363 NIKYWDTETGQ-------VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 434 (587)
Q Consensus 363 ~I~vWd~~t~~-------~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~ 434 (587)
+|+|||+.++. ++..+..+ ..+.++.|+|.. .++|++|+.|+.|++||+.+++.+..+..|...|.+++|
T Consensus 99 tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~--~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~ 176 (493)
T PTZ00421 99 TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA--MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176 (493)
T ss_pred EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC--CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEE
Confidence 99999997653 34455433 345677787754 368999999999999999999999999999999999999
Q ss_pred ecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc-ceeEEEEeCCCCEEEEEE----CCCeEEEEEcCCceeecccce
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQS----LDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~~~s----~dg~I~iwd~~~~~~~~~~~~ 509 (587)
+|++.+|++++.|+.|+|||++++..+..+.. |.. .+..+.|.+++..|++++ .|+.|++||++...... ..
T Consensus 177 spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~--~~ 253 (493)
T PTZ00421 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY--ST 253 (493)
T ss_pred ECCCCEEEEecCCCEEEEEECCCCcEEEEEec-CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce--eE
Confidence 99999999999999999999999888776643 544 345678888887777654 47899999998643221 11
Q ss_pred ecccccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEcC
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHP 568 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~-h~~~V~~v~~sp 568 (587)
...+ ....+....|++++++|++|+ .||.|++||+.+++++..+.. +..++.+++|.|
T Consensus 254 ~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 254 VDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred eccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 1111 123455577999999998887 599999999999988776654 445677888887
No 69
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.95 E-value=4e-28 Score=232.34 Aligned_cols=263 Identities=21% Similarity=0.414 Sum_probs=212.0
Q ss_pred ecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEE
Q 007855 257 GKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY 336 (587)
Q Consensus 257 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~ 336 (587)
.++.+|.+++.|- .....++..+.||++.|.|+.|. ..+|+|||.|.+|+|||+ ++++++.++
T Consensus 211 VSGlrDnTikiWD-------------~n~~~c~~~L~GHtGSVLCLqyd---~rviisGSSDsTvrvWDv-~tge~l~tl 273 (499)
T KOG0281|consen 211 VSGLRDNTIKIWD-------------KNSLECLKILTGHTGSVLCLQYD---ERVIVSGSSDSTVRVWDV-NTGEPLNTL 273 (499)
T ss_pred hcccccCceEEec-------------cccHHHHHhhhcCCCcEEeeecc---ceEEEecCCCceEEEEec-cCCchhhHH
Confidence 4556666666663 33446778899999999999996 459999999999999999 899999999
Q ss_pred cccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE--EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 007855 337 MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 414 (587)
Q Consensus 337 ~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~ 414 (587)
.+|..+|..+.|+. .+++++|.|.+|.|||+.+...+. ..-.++...+-.+..++ .++++++.|.+|++|++.
T Consensus 274 ihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~---kyIVsASgDRTikvW~~s 348 (499)
T KOG0281|consen 274 IHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KYIVSASGDRTIKVWSTS 348 (499)
T ss_pred hhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc---ceEEEecCCceEEEEecc
Confidence 99999999999975 499999999999999998765221 11123333222223322 489999999999999999
Q ss_pred CCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEE
Q 007855 415 TKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQIL 494 (587)
Q Consensus 415 t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~ 494 (587)
+++.++.+.+|...|.|+.+. ++++++|+.|.+|++||+..+.+++.+. +|..-|.++.|. .+.+++|..||.|+
T Consensus 349 t~efvRtl~gHkRGIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkik 423 (499)
T KOG0281|consen 349 TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIK 423 (499)
T ss_pred ceeeehhhhcccccceehhcc--CeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEE
Confidence 999999999999999999984 8899999999999999999999987774 688899999995 67899999999999
Q ss_pred EEEcCCceeec------ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 495 IYSTRERFQLN------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 495 iwd~~~~~~~~------~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
+||+....... ....+..| .+.|..+.| |...+++++.|..|.|||+.++..
T Consensus 424 vWdl~aaldpra~~~~~Cl~~lv~h--sgRVFrLQF--D~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 424 VWDLQAALDPRAPASTLCLRTLVEH--SGRVFRLQF--DEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEecccccCCcccccchHHHhhhhc--cceeEEEee--cceEEEeccCCCeEEEEEcCCCCc
Confidence 99987654321 11222223 567878888 566889999999999999977644
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.95 E-value=6.5e-26 Score=219.12 Aligned_cols=283 Identities=14% Similarity=0.230 Sum_probs=229.1
Q ss_pred cCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeC
Q 007855 238 KGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 317 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~ 317 (587)
..+....-.....+..++..++..|...-.|....++ ....+.||...|+|+.|+.+ |.+||||++
T Consensus 61 ~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-------------~~~eltgHKDSVt~~~Fshd-gtlLATGdm 126 (399)
T KOG0296|consen 61 DKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-------------FAGELTGHKDSVTCCSFSHD-GTLLATGDM 126 (399)
T ss_pred hhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc-------------ceeEecCCCCceEEEEEccC-ceEEEecCC
Confidence 3444445555566688888888888888888665543 46788999999999999999 999999999
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQ 396 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~ 396 (587)
+|.|+||.. .++.....+...-..|.-|.|+|.+..|+.|+.||.|-+|.+.++...+.+..+.. ..+-.|.|++
T Consensus 127 sG~v~v~~~-stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdG--- 202 (399)
T KOG0296|consen 127 SGKVLVFKV-STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDG--- 202 (399)
T ss_pred CccEEEEEc-ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCC---
Confidence 999999999 67777777766777888999999999999999999999999999877777776543 4466777764
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEcc---------------------------------------------------C
Q 007855 397 NILLAGMSDKKIVQWDMNTKEITQEYDQ---------------------------------------------------H 425 (587)
Q Consensus 397 ~~l~sg~~dg~I~iwD~~t~~~~~~~~~---------------------------------------------------h 425 (587)
..+++|..||+|++|++.+++++..+.+ +
T Consensus 203 Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~ 282 (399)
T KOG0296|consen 203 KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQ 282 (399)
T ss_pred ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccc
Confidence 5799999999999999999987766541 0
Q ss_pred CCCeeEEE---EecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 426 LGAVNTIT---FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 426 ~~~I~~i~---~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
...+.|+. ++..-.++++|+-||+|.|||+......... .|..+|+.+.|.+ ..+|++++.+|.|+.||.+++.
T Consensus 283 e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~ 359 (399)
T KOG0296|consen 283 EELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHIC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQ 359 (399)
T ss_pred hhhhhhhhhcccccccchhhcccccceEEEEecccchhheec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccc
Confidence 11111222 2223356788999999999999887766555 5888899999998 8899999999999999999986
Q ss_pred eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
.. ..+.|| ...|.+++++|+++++++++.|+..+||++.
T Consensus 360 l~---~~y~GH--~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 360 LK---FTYTGH--QMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred eE---EEEecC--chheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 54 667788 4668889999999999999999999999864
No 71
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-25 Score=213.00 Aligned_cols=248 Identities=18% Similarity=0.313 Sum_probs=205.9
Q ss_pred eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc-eEEEEccCCCCCcEEEEEeC--CCcE
Q 007855 332 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMS--DKKI 408 (587)
Q Consensus 332 ~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~--dg~I 408 (587)
+.+.+......|.+|.|+.+|.+|++++.|.+|+|||..+++.++++...+.. ..++|.... +.++.++. |..|
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~---~~~i~sStk~d~tI 82 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS---NTVIHSSTKEDDTI 82 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC---ceEEEccCCCCCce
Confidence 34455556788999999999999999999999999999999999999876544 345554433 45666666 8899
Q ss_pred EEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE
Q 007855 409 VQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 409 ~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s 488 (587)
+..++.+.+.++-+.+|...|++|+.+|-+..|++++.|++|++||++...+...+. ...-..+++.|.|-++|++.
T Consensus 83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp~GLifA~~~ 159 (311)
T KOG1446|consen 83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDPEGLIFALAN 159 (311)
T ss_pred EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECCCCcEEEEec
Confidence 999999999999999999999999999999999999999999999999888877763 34456789999999999999
Q ss_pred CCCeEEEEEcCCceeecccceeccc-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCE---EEE
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC---IGC 564 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V---~~v 564 (587)
..+.|++||++....- +...+.-. ........+.|||||++|+.++..+.+++.|.-+|..+.++..+...- ...
T Consensus 160 ~~~~IkLyD~Rs~dkg-PF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a 238 (311)
T KOG1446|consen 160 GSELIKLYDLRSFDKG-PFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSA 238 (311)
T ss_pred CCCeEEEEEecccCCC-CceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeE
Confidence 8889999999864211 11111111 223456779999999999999999999999999999999998876532 678
Q ss_pred EEcCCCCCEEEEEECCCcEEEcC
Q 007855 565 EWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 565 ~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.|.| ++++|++|+.||+|.+|+
T Consensus 239 ~ftP-ds~Fvl~gs~dg~i~vw~ 260 (311)
T KOG1446|consen 239 TFTP-DSKFVLSGSDDGTIHVWN 260 (311)
T ss_pred EECC-CCcEEEEecCCCcEEEEE
Confidence 8999 888999999999999996
No 72
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=5.2e-27 Score=229.76 Aligned_cols=258 Identities=19% Similarity=0.320 Sum_probs=221.4
Q ss_pred cccCCCcccCCCc--eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCC
Q 007855 275 AKAANDHCYIPKR--LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG 352 (587)
Q Consensus 275 ~~~~~~~~~~p~~--~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg 352 (587)
++.+..|...+.+ ++.+|.|-.++|+++.|.++ ++.+++++.|+.+++|++ ...+...++.+|.+.|+++.|....
T Consensus 196 Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~-~~~~iAas~d~~~r~Wnv-d~~r~~~TLsGHtdkVt~ak~~~~~ 273 (459)
T KOG0288|consen 196 DRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSD-NKHVIAASNDKNLRLWNV-DSLRLRHTLSGHTDKVTAAKFKLSH 273 (459)
T ss_pred hhhhhhhhcccchhhhhhhhhccCCCcceeeecCC-CceEEeecCCCceeeeec-cchhhhhhhcccccceeeehhhccc
Confidence 3444455566655 78899999999999999999 889999999999999999 8899999999999999999999877
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEE
Q 007855 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 432 (587)
Q Consensus 353 ~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i 432 (587)
..+++|+.|.+|++||+....|.+++-.......+.+.. ..+++|-.|++|++||+++..++.+...+. .|+++
T Consensus 274 ~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~~-----~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl 347 (459)
T KOG0288|consen 274 SRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCSI-----SDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSL 347 (459)
T ss_pred cceeeccccchhhhhhhhhhheeccccccccccceEecc-----eeeeecccccceEEEeccCCceeeEeecCc-ceeeE
Confidence 779999999999999999999988877666655555542 469999999999999999999999987665 99999
Q ss_pred EEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC---CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce
Q 007855 433 TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 433 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 509 (587)
..++++..+++++.|.++.+.|+++......+... ..+..+.+.|+|++.|+++|+.||.|+||++.++........
T Consensus 348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 99999999999999999999999998877666432 233488899999999999999999999999998866543333
Q ss_pred ecccccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vw 543 (587)
-. ....|+++.|+|.|.+|++++.++.+.+|
T Consensus 428 s~---s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ST---SNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CC---CCcceEEEEEcCCCchhhcccCCcceEec
Confidence 22 23368999999999999999999999999
No 73
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.1e-25 Score=213.37 Aligned_cols=297 Identities=17% Similarity=0.303 Sum_probs=234.7
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
-.|.++-+++..-. -.|+.|++. |.+||+|+.||.|.|||+ .+....+.+.+|..+|++++||++|+.|+++|.|.
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~-G~~lAvGc~nG~vvI~D~-~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~ 87 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRW-GDYLAVGCANGRVVIYDF-DTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDW 87 (405)
T ss_pred cChHhhceeccCCc--cceEEeccC-cceeeeeccCCcEEEEEc-cccchhhhhhccccceeEEEecCCCCEeeeecCCc
Confidence 35667777776433 889999999 999999999999999999 78888899999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC----CCCeeEEEEecCC
Q 007855 363 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH----LGAVNTITFVDNN 438 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h----~~~I~~i~~sp~~ 438 (587)
.|.+||+..|.+++.+.....++.+.++|... +.+++.-.+..-.+.++..+....--... .....+..|.+.|
T Consensus 88 si~lwDl~~gs~l~rirf~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g 165 (405)
T KOG1273|consen 88 SIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRG 165 (405)
T ss_pred eeEEEeccCCCceeEEEccCccceeeeccccC--CeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCC
Confidence 99999999999999999999999999998654 56666655555555555442211110111 1122334688999
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce------eecccceecc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF------QLNKKKRFAG 512 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~------~~~~~~~~~~ 512 (587)
+++++|...|.+.+++..+.+++..+.......|..+.++..|.+|+.-+.|..|+.|+++.-. .+.....+..
T Consensus 166 ~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD 245 (405)
T KOG1273|consen 166 KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD 245 (405)
T ss_pred CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH
Confidence 9999999999999999999988877766556789999999999999999999999999976321 2222223333
Q ss_pred cccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeeEEEEecCC-CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 513 HIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~~L~sgs~-dG~I~vwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
-.+...-.+++||.+|.|+++|+. ...++||.-..|.+++.+.|.. .....+.|+| -...|++. ..|.|+||.
T Consensus 246 vVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~ 320 (405)
T KOG1273|consen 246 VVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWA 320 (405)
T ss_pred HHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEE
Confidence 333334446899999999988874 3469999999999999999887 4678899999 45566666 789999994
No 74
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2.5e-26 Score=217.63 Aligned_cols=293 Identities=22% Similarity=0.378 Sum_probs=237.3
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
..++++.|.||..+|..++.... ..++.+++.|.+.+||.+ .++.|+.+|.||.+.|++|.|++.+.++++++.|++.
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa~~t-qpi~gtASADhTA~iWs~-Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAADST-QPICGTASADHTARIWSL-ESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred eEeehhhhcccccceeeehhhcC-CcceeecccccceeEEee-ccccceeeecccccceeeEEeccccceEEEccCCcch
Confidence 45778899999999999998877 679999999999999999 8999999999999999999999999999999999999
Q ss_pred EEEEC------CC------------------------------C----cEEEEeecCCcceEEEEccCCCCCcEEEEEeC
Q 007855 365 KYWDT------ET------------------------------G----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS 404 (587)
Q Consensus 365 ~vWd~------~t------------------------------~----~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~ 404 (587)
.||.. .. + .++..+.. +...+++..+. ..+..+++++.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H~~vV~a~dWL-~gg~Q~vTaSW 292 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-HRAVVSACDWL-AGGQQMVTASW 292 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-cccceEehhhh-cCcceeeeeec
Confidence 99962 11 0 01122222 22222222222 23456999999
Q ss_pred CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEE
Q 007855 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 484 (587)
Q Consensus 405 dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l 484 (587)
|.+-.+||+.+++++..+.+|....+.++-+|..+++++++.|.+.++||++..........+|...|+++.|..+. .+
T Consensus 293 DRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~v 371 (481)
T KOG0300|consen 293 DRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RV 371 (481)
T ss_pred cccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ce
Confidence 99999999999999999999999999999999999999999999999999997666666677899999999998654 58
Q ss_pred EEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE----EEecCCCC
Q 007855 485 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR----TLKCHEGV 560 (587)
Q Consensus 485 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~----~l~~h~~~ 560 (587)
++|+.|.+|++||+++.... +..+. ....+..++.+..+..|+.--.+..|++||+...++.. .-++|...
T Consensus 372 VSgSDDrTvKvWdLrNMRsp--lATIR---tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRM 446 (481)
T KOG0300|consen 372 VSGSDDRTVKVWDLRNMRSP--LATIR---TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRM 446 (481)
T ss_pred eecCCCceEEEeeeccccCc--ceeee---cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCccccccccee
Confidence 89999999999999875432 12222 24567779999999999999999999999996544322 33589999
Q ss_pred EEEEEEcCCC-CCEEEEEECCCcEEEcC
Q 007855 561 CIGCEWHPLE-QSKVATCGWDGLIKYWD 587 (587)
Q Consensus 561 V~~v~~sp~~-~~~l~s~g~DG~I~iWD 587 (587)
|+|++|.... -.-|++||.|..+.-|.
T Consensus 447 V~c~AW~eehp~cnLftcGFDR~v~gW~ 474 (481)
T KOG0300|consen 447 VTCCAWLEEHPACNLFTCGFDRMVAGWK 474 (481)
T ss_pred eeeeeccccCcccccccccccceeeeeE
Confidence 9999997521 13589999999988773
No 75
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.6e-24 Score=194.45 Aligned_cols=285 Identities=19% Similarity=0.298 Sum_probs=223.8
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC--------------CCeeeEEEcccCCceeeEEEecCCCeEEEEe
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN--------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTAS 359 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~--------------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s 359 (587)
..+..|.+++|+|. |.+.+.|+...+++|.-... .....+.-+.|.+.|.|.+|+|+|.+|++|+
T Consensus 30 ~dsqairav~fhp~-g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs 108 (350)
T KOG0641|consen 30 EDSQAIRAVAFHPA-GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS 108 (350)
T ss_pred cchhheeeEEecCC-CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence 45678999999999 88999999999999875411 0111223456899999999999999999999
Q ss_pred CCCeEEEEECCCCcEE-----EEee-cCCcceEEEEccCCCCC-cEEEEE-eCCCcEEEEeCCCCcEEEEEccCCCCeeE
Q 007855 360 YDKNIKYWDTETGQVI-----RTFS-TGKIPYVVKLNPDDDKQ-NILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNT 431 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i-----~~~~-~~~~~~~~~~~~~~~~~-~~l~sg-~~dg~I~iwD~~t~~~~~~~~~h~~~I~~ 431 (587)
.|.+|++.-+....+. ..|. +...+..++|..++..+ .+|+++ ..|..|++-|...++..+.+.+|.+.|.+
T Consensus 109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghila 188 (350)
T KOG0641|consen 109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILA 188 (350)
T ss_pred CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEE
Confidence 9999999865433221 1232 33455566776554433 444444 45778889999999999999999999988
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC------CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+--- ++-+|++|+.|.+|++||++.+.++..+... ....|.++++.|.|++|++|-.|....+||++.+..+
T Consensus 189 lysw-n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i- 266 (350)
T KOG0641|consen 189 LYSW-NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI- 266 (350)
T ss_pred EEEe-cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee-
Confidence 7422 5789999999999999999999888777432 2356899999999999999999999999999988665
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~----~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
+.+..| ...|.++.|||...||++++.|..|++-|++.. -.+.....|...+..+.|+|++- -+++.+.|.
T Consensus 267 --q~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~-sfisssadk 341 (350)
T KOG0641|consen 267 --QRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDF-SFISSSADK 341 (350)
T ss_pred --eeeCCC--ccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccc-eeeeccCcc
Confidence 344445 677899999999999999999999999998642 12334456999999999999554 578888999
Q ss_pred cEEEc
Q 007855 582 LIKYW 586 (587)
Q Consensus 582 ~I~iW 586 (587)
++.+|
T Consensus 342 t~tlw 346 (350)
T KOG0641|consen 342 TATLW 346 (350)
T ss_pred eEEEe
Confidence 99999
No 76
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=2e-25 Score=211.96 Aligned_cols=250 Identities=19% Similarity=0.291 Sum_probs=198.8
Q ss_pred CcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC--eEEE
Q 007855 280 DHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT--KFLT 357 (587)
Q Consensus 280 ~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~--~l~s 357 (587)
..+.+...++..+..|.++|++|+.+ +.++||||.|-+|+|||+ .....+..+..|.+.|+++.|.++-. .|++
T Consensus 27 ~s~~~~l~~lF~~~aH~~sitavAVs---~~~~aSGssDetI~IYDm-~k~~qlg~ll~HagsitaL~F~~~~S~shLlS 102 (362)
T KOG0294|consen 27 DSVKPTLKPLFAFSAHAGSITALAVS---GPYVASGSSDETIHIYDM-RKRKQLGILLSHAGSITALKFYPPLSKSHLLS 102 (362)
T ss_pred cccceeeeccccccccccceeEEEec---ceeEeccCCCCcEEEEec-cchhhhcceeccccceEEEEecCCcchhheee
Confidence 34455566788999999999999997 789999999999999999 77888888889999999999988643 5555
Q ss_pred EeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 358 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
|+.||.|.+|+ .....++..+++|.+.|+.|+++|.
T Consensus 103 ~sdDG~i~iw~--------------------------------------------~~~W~~~~slK~H~~~Vt~lsiHPS 138 (362)
T KOG0294|consen 103 GSDDGHIIIWR--------------------------------------------VGSWELLKSLKAHKGQVTDLSIHPS 138 (362)
T ss_pred ecCCCcEEEEE--------------------------------------------cCCeEEeeeecccccccceeEecCC
Confidence 55555555555 4444566677889999999999999
Q ss_pred CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc
Q 007855 438 NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
+++-++.+.|+.+++|++-.++.-......+ .-+.+.|+|.|.+|+.+..+ .|-+|.+.+......... ..
T Consensus 139 ~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~------~~ 209 (362)
T KOG0294|consen 139 GKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIEN------PK 209 (362)
T ss_pred CceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhc------cc
Confidence 9999999999999999998877665553333 33459999999999888755 488998876533322111 12
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEc-CCCCCEEEEEECCCcEEEcC
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH-PLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~s-p~~~~~l~s~g~DG~I~iWD 587 (587)
.+.++.|- ++.+|++|..|+.|.+||..+..++..+.+|...|-++.+. ..+..+|+|+|.||.|+|||
T Consensus 210 r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd 279 (362)
T KOG0294|consen 210 RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD 279 (362)
T ss_pred cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence 34445553 57799999999999999999999999999999999999843 22567999999999999997
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=8.9e-26 Score=222.22 Aligned_cols=263 Identities=21% Similarity=0.360 Sum_probs=226.4
Q ss_pred cccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCe
Q 007855 275 AKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTK 354 (587)
Q Consensus 275 ~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~ 354 (587)
++..........+++.+|+||+..|+.+.|+|+ ...+++++.|-.|+||.+ ...........|..+|+.+..+|.|.|
T Consensus 240 d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~-~~~v~~aSad~~i~vws~-~~~s~~~~~~~h~~~V~~ls~h~tgeY 317 (506)
T KOG0289|consen 240 DKTAVLFDKPSNQILATLKGHTKKITSVKFHKD-LDTVITASADEIIRVWSV-PLSSEPTSSRPHEEPVTGLSLHPTGEY 317 (506)
T ss_pred CCceEEEecchhhhhhhccCcceEEEEEEeccc-hhheeecCCcceEEeecc-ccccCccccccccccceeeeeccCCcE
Confidence 333344555667889999999999999999999 889999999999999999 566677778899999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCC---cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeE
Q 007855 355 FLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 431 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~ 431 (587)
|++++.|++..+.|++++.++....... ...+..|+|++ .+|.+|..||.|++||+.++..+..|.+|.++|..
T Consensus 318 llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg---Lifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~ 394 (506)
T KOG0289|consen 318 LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG---LIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKA 394 (506)
T ss_pred EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc---eEEeccCCCceEEEEEcCCccccccCCCCCCceeE
Confidence 9999999999999999999988776642 24567788765 68999999999999999999999999999999999
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
|.|+.+|-+|+++++|+.|++||++..+..+.+.......+.+++|.+.|.+|+.++.+=+|++++-.+ ........+.
T Consensus 395 i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~-k~W~~~~~~~ 473 (506)
T KOG0289|consen 395 ISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKT-KSWTEIKELA 473 (506)
T ss_pred EEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccc-ccceeeehhh
Confidence 999999999999999999999999999988888877777899999999999999998877777776433 2333444444
Q ss_pred ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 512 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
.| .+..+.+.|....+++++++.|..++++.+
T Consensus 474 ~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 474 DH--SGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred hc--ccccceeeecccceEEeeccchhheEEeec
Confidence 44 467788999999999999999998888754
No 78
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.94 E-value=1.3e-25 Score=243.65 Aligned_cols=286 Identities=22% Similarity=0.387 Sum_probs=228.5
Q ss_pred EEcCCC-CCeEEEEEccCCCcEEEEEe--CCCeEEEEecCC-----------CCeeeEEEcccCCceeeEEEecCCCeEE
Q 007855 291 TWSGHT-KGVSAIRFFPKYGHLILSAG--MDTKVKIWDVFN-----------SGKCMRTYMGHSKAVRDISFCNDGTKFL 356 (587)
Q Consensus 291 tl~gH~-~~V~~l~~sp~~g~~L~sgs--~Dg~I~iWd~~~-----------~~~~~~~~~~h~~~V~~l~fs~dg~~l~ 356 (587)
+|-+|. ..|.+|..+|+ +..++||+ .||.++||+... -.+.+.+...|.+.|.|+.|++||.+||
T Consensus 7 ~wv~H~~~~IfSIdv~pd-g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lA 85 (942)
T KOG0973|consen 7 TWVNHNEKSIFSIDVHPD-GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLA 85 (942)
T ss_pred cccccCCeeEEEEEecCC-ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEe
Confidence 344554 47999999999 99999999 999999998721 1345567778999999999999999999
Q ss_pred EEeCCCeEEEEECCC------------------CcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc
Q 007855 357 TASYDKNIKYWDTET------------------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 417 (587)
Q Consensus 357 s~s~Dg~I~vWd~~t------------------~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~ 417 (587)
+||.|+.|.||.... .+++..+..+ ..+..++|+|++ .+|++++.|++|.+|+.++.+
T Consensus 86 sGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~---~~lvS~s~DnsViiwn~~tF~ 162 (942)
T KOG0973|consen 86 SGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD---SLLVSVSLDNSVIIWNAKTFE 162 (942)
T ss_pred eccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc---cEEEEecccceEEEEccccce
Confidence 999999999998772 1233444432 334456677644 699999999999999999999
Q ss_pred EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCC-----cceeEEEEeCCCCEEEEEEC---
Q 007855 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-----HSMPSISLHPNTNWLAAQSL--- 489 (587)
Q Consensus 418 ~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-----~~i~~i~~sp~g~~l~~~s~--- 489 (587)
.+..+.+|.+.|-.+.|.|-|++|++-++|++|+||.+......+.+..+.. .-+..+.|+|+|.+|++...
T Consensus 163 ~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~ 242 (942)
T KOG0973|consen 163 LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNG 242 (942)
T ss_pred eeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccC
Confidence 9999999999999999999999999999999999999887777777665433 34778999999999998732
Q ss_pred -CCeEEEEEcCCceeecccceecccccccceEEEEEcCC-------------CC----EEEEEcCCCcEEEEeCCCCeeE
Q 007855 490 -DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-------------GR----FVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 490 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-------------g~----~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
-..+.|.+-.+ ...-..+.|| ...+.++.|+|. .. .+|+|+.|++|.||.....+++
T Consensus 243 ~~~~~~IieR~t---Wk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 243 GKSTIAIIERGT---WKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL 317 (942)
T ss_pred CcceeEEEecCC---ceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCch
Confidence 24566665533 2334567788 467888999881 11 5789999999999998777776
Q ss_pred EEEe-cCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 552 RTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 552 ~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
..+. .-...|.+++|+| ++..|+.|+.||+|.+.
T Consensus 318 ~vi~~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i 352 (942)
T KOG0973|consen 318 FVIHNLFNKSIVDMSWSP-DGFSLFACSLDGTVALI 352 (942)
T ss_pred hhhhhhhcCceeeeeEcC-CCCeEEEEecCCeEEEE
Confidence 5543 2356899999999 78899999999999874
No 79
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=1.6e-25 Score=240.30 Aligned_cols=268 Identities=22% Similarity=0.409 Sum_probs=220.8
Q ss_pred CCCcccCCCcccCCCceEEE-EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec
Q 007855 272 PKDAKAANDHCYIPKRLVHT-WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN 350 (587)
Q Consensus 272 ~~~~~~~~~~~~~p~~~i~t-l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~ 350 (587)
......+..++..+...+.+ +.||.+.|.+++|... +.+|++|+.|.++++||. .++.|..++.+|...|.++...+
T Consensus 224 ~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~-~~~lvsgS~D~t~rvWd~-~sg~C~~~l~gh~stv~~~~~~~ 301 (537)
T KOG0274|consen 224 GSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSG-GDKLVSGSTDKTERVWDC-STGECTHSLQGHTSSVRCLTIDP 301 (537)
T ss_pred cCCCceeEEeecccceEEEeeccCCCCCceeEEEecC-CCEEEEEecCCcEEeEec-CCCcEEEEecCCCceEEEEEccC
Confidence 33344444556667777777 9999999999999874 889999999999999997 89999999999999999998854
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 429 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I 429 (587)
.++++|+.|.+|++|++.++.++..+. +...+.++.+. +.++++|+.|+.|.+||+.+++++..+.+|...|
T Consensus 302 --~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~-----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V 374 (537)
T KOG0274|consen 302 --FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD-----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRV 374 (537)
T ss_pred --ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec-----CCEEEEEecCceEEEEEhhhceeeeeecCCcceE
Confidence 478889999999999999999999998 44455555554 3589999999999999999999999999999999
Q ss_pred eEEEEecCCCEEEEEECCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 430 NTITFVDNNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
.++.+... ..+++|+.|++|++||+++. +++..+. .|..-+..+. ..+++|++++.|+.|++||...+.++....
T Consensus 375 ~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~ 450 (537)
T KOG0274|consen 375 YSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLE 450 (537)
T ss_pred EEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccc--cccceeEeccccccEEEeecccCceeeeec
Confidence 99988755 89999999999999999999 7776664 3555554443 467899999999999999998887664433
Q ss_pred eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 558 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~ 558 (587)
.. + .+.+..+++. ...+++++.+|.+.+||++++++...+-.+.
T Consensus 451 ~~--~--~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~~ 494 (537)
T KOG0274|consen 451 GR--H--VGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLSTD 494 (537)
T ss_pred cC--C--cccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhcc
Confidence 32 2 3455556554 4688999999999999999999888774333
No 80
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=1.5e-24 Score=233.44 Aligned_cols=265 Identities=15% Similarity=0.213 Sum_probs=197.7
Q ss_pred ecccccccceeeeeCCCC-cccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC-----
Q 007855 257 GKEEKDYQGRSWVAPPKD-AKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG----- 330 (587)
Q Consensus 257 ~~~~~d~~~r~w~~~~~~-~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~----- 330 (587)
.....++....|....+. ...+..+.......+..+.+|.+.|.+|+|+|..+.+|+||+.||+|+||++...+
T Consensus 34 ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~ 113 (568)
T PTZ00420 34 IACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE 113 (568)
T ss_pred EeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc
Confidence 345556666677654433 22333344444567889999999999999999768899999999999999994332
Q ss_pred --eeeEEEcccCCceeeEEEecCCCe-EEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 331 --KCMRTYMGHSKAVRDISFCNDGTK-FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 331 --~~~~~~~~h~~~V~~l~fs~dg~~-l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
.++..+.+|...|.+++|+|++.. |++++.|++|+|||+++++.+..+.....+.++.|++++ .+|++++.|+.
T Consensus 114 i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG---~lLat~s~D~~ 190 (568)
T PTZ00420 114 IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKG---NLLSGTCVGKH 190 (568)
T ss_pred cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCC---CEEEEEecCCE
Confidence 234567899999999999998875 468999999999999999988877766667788888754 57888999999
Q ss_pred EEEEeCCCCcEEEEEccCCCCeeEEE-----EecCCCEEEEEECCC----CEEEEECCC-CeEEEEeecC-CCcceeEEE
Q 007855 408 IVQWDMNTKEITQEYDQHLGAVNTIT-----FVDNNRRFVTSSDDK----SLRVWEFGI-PVVIKYISEP-HMHSMPSIS 476 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h~~~I~~i~-----~sp~~~~l~s~s~Dg----~I~iwd~~~-~~~~~~~~~~-~~~~i~~i~ 476 (587)
|++||+++++.+..+.+|.+.+.+.. |++++.+|++++.|+ .|+|||++. ..++..+... +...+....
T Consensus 191 IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~ 270 (568)
T PTZ00420 191 MHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHY 270 (568)
T ss_pred EEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEee
Confidence 99999999999999999988765433 347888999988775 799999985 4445443222 222333333
Q ss_pred EeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 477 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 477 ~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
..+++.++++|+.|+.|++|++..+. +..+..+ ........++|.|..
T Consensus 271 D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~---~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 271 DESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY---KSCSPFRSFGFLPKQ 318 (568)
T ss_pred eCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc---ccCCCccceEEcccc
Confidence 35568899999999999999997653 2222222 234556678898864
No 81
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.94 E-value=8.4e-25 Score=203.40 Aligned_cols=286 Identities=20% Similarity=0.292 Sum_probs=227.4
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 318 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D 318 (587)
|+...+....-.....++.+..+|.....|-... ...+-++.||++.|.|+...-+ ...|++|+.|
T Consensus 8 GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~n-------------GerlGty~GHtGavW~~Did~~-s~~liTGSAD 73 (327)
T KOG0643|consen 8 GHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-------------GERLGTYDGHTGAVWCCDIDWD-SKHLITGSAD 73 (327)
T ss_pred cCccccceEEecCCCcEEEEecCCCCceEEEecC-------------CceeeeecCCCceEEEEEecCC-cceeeecccc
Confidence 4444444445556677888888888888885543 4568899999999999999988 8899999999
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC-----CCeEEEEECC-------CCcEEEEeecC-Ccce
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNIKYWDTE-------TGQVIRTFSTG-KIPY 385 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-----Dg~I~vWd~~-------t~~~i~~~~~~-~~~~ 385 (587)
.+++|||+ .+++++.++. ...+|..+.|+.+|++++.+.. .+.|.++|++ ..+++..+..+ ..+.
T Consensus 74 ~t~kLWDv-~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit 151 (327)
T KOG0643|consen 74 QTAKLWDV-ETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKIT 151 (327)
T ss_pred ceeEEEEc-CCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCcccee
Confidence 99999999 8999998886 5578999999999998887754 4789999998 44555555544 4455
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEe
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 464 (587)
...|.+.+ ..|++|..+|.|.+||++++ +.+.....|...|+.|.++++..+|+++|.|.+-++||..+..+++.+
T Consensus 152 ~a~Wg~l~---~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty 228 (327)
T KOG0643|consen 152 SALWGPLG---ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTY 228 (327)
T ss_pred eeeecccC---CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEe
Confidence 66666654 58999999999999999997 567777889999999999999999999999999999999999999988
Q ss_pred ecCCCcceeEEEEeCCCCEEEEEECCCeEEEE--EcCCce---------eecccceecccccccceEEEEEcCCCCEEEE
Q 007855 465 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIY--STRERF---------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 533 (587)
Q Consensus 465 ~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iw--d~~~~~---------~~~~~~~~~~~~~~~~i~~l~~spdg~~L~s 533 (587)
. ...++.+.+++|...+++.|+.....-+= +.+.++ ....+...++| -++|.+++|+|+|+..++
T Consensus 229 ~--te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--FGPINsvAfhPdGksYsS 304 (327)
T KOG0643|consen 229 T--TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--FGPINSVAFHPDGKSYSS 304 (327)
T ss_pred e--ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--ccCcceeEECCCCccccc
Confidence 4 56789999999988888777644322221 122221 01223456777 588999999999999999
Q ss_pred EcCCCcEEEEeCCC
Q 007855 534 GDGEGKCWFWDWKS 547 (587)
Q Consensus 534 gs~dG~I~vwd~~t 547 (587)
|+.||.|++.-+..
T Consensus 305 GGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 305 GGEDGYVRLHHFDS 318 (327)
T ss_pred CCCCceEEEEEecc
Confidence 99999999986543
No 82
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=4e-24 Score=229.07 Aligned_cols=230 Identities=16% Similarity=0.215 Sum_probs=180.7
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC------eeeEEEcccCCceeeEEEecCC-CeEEEEeCCCe
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG------KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKN 363 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fs~dg-~~l~s~s~Dg~ 363 (587)
.+.||.+.|++++|+|.++++|++|+.|++|+|||+...+ .++..+.+|...|.+|+|+|++ .+|++++.|++
T Consensus 70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 4789999999999999448899999999999999994322 3577889999999999999975 69999999999
Q ss_pred EEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC-eeEEEEecCCCEE
Q 007855 364 IKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDNNRRF 441 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~-I~~i~~sp~~~~l 441 (587)
|+|||+.+++.+..+..+ ..+.++.|++++ .+|++|+.|+.|++||+++++.+..+..|.+. +..+.|.+++..|
T Consensus 150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG---~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i 226 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDG---SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI 226 (493)
T ss_pred EEEEECCCCeEEEEEcCCCCceEEEEEECCC---CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence 999999999988888643 456678888754 58999999999999999999999999888765 4567888888888
Q ss_pred EEEE----CCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceeccccc
Q 007855 442 VTSS----DDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 442 ~s~s----~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
++++ .|+.|++||++... ++..........+....|++++++|++++ .|+.|++|++.++....... +. .
T Consensus 227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~-~~---s 302 (493)
T PTZ00421 227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSS-YS---S 302 (493)
T ss_pred EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEee-cc---C
Confidence 7765 47899999998754 33333222334566677899999998887 59999999998765443211 11 1
Q ss_pred ccceEEEEEcCC
Q 007855 516 AGYACQVNFSPD 527 (587)
Q Consensus 516 ~~~i~~l~~spd 527 (587)
...+..++|.|.
T Consensus 303 ~~~~~g~~~~pk 314 (493)
T PTZ00421 303 VEPHKGLCMMPK 314 (493)
T ss_pred CCCCcceEeccc
Confidence 233445777774
No 83
>PTZ00420 coronin; Provisional
Probab=99.94 E-value=9.1e-24 Score=227.46 Aligned_cols=247 Identities=11% Similarity=0.180 Sum_probs=188.4
Q ss_pred EeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC-CCeEEEEeCCCeEEEEECCCCc--------EEEEeec-CCcc
Q 007855 315 AGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ--------VIRTFST-GKIP 384 (587)
Q Consensus 315 gs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~--------~i~~~~~-~~~~ 384 (587)
|+.++.|+||+. .....+..+.+|...|.+++|+|+ +.+|++|+.|++|+|||+.++. ++..+.. ...+
T Consensus 50 GG~~gvI~L~~~-~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V 128 (568)
T PTZ00420 50 GGLIGAIRLENQ-MRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKI 128 (568)
T ss_pred CCceeEEEeeec-CCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcE
Confidence 667899999998 456788899999999999999996 7899999999999999998642 2233332 3345
Q ss_pred eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEe
Q 007855 385 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 385 ~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 464 (587)
.++.|+|.. ..+|++++.|+.|++||+++++.+..+. |...|.+++|+++|.+|++++.|+.|+|||++++..+..+
T Consensus 129 ~sVaf~P~g--~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 129 SIIDWNPMN--YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred EEEEECCCC--CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 677887754 3567899999999999999998877775 6688999999999999999999999999999999888766
Q ss_pred ecCCCcceeE-----EEEeCCCCEEEEEECCC----eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 465 SEPHMHSMPS-----ISLHPNTNWLAAQSLDN----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 465 ~~~~~~~i~~-----i~~sp~g~~l~~~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
. .|...+.+ ..|++++.+|++++.++ .|+|||++..... +.....+...+.+......++|.++++|+
T Consensus 206 ~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~p--l~~~~ld~~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 206 H-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSA--LVTMSIDNASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred e-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCc--eEEEEecCCccceEEeeeCCCCCEEEEEE
Confidence 4 46554332 23458889999988774 7999999853222 12222222233333344466799999999
Q ss_pred CCCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcCC
Q 007855 536 GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPL 569 (587)
Q Consensus 536 ~dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp~ 569 (587)
.|+.|++|++..+.+ ..+.. +..++.+++|.|.
T Consensus 283 GD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 283 GDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CCCeEEEEEccCCcE-EeecccccCCCccceEEccc
Confidence 999999999987643 22322 5568889999994
No 84
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=2.9e-25 Score=229.45 Aligned_cols=293 Identities=15% Similarity=0.255 Sum_probs=235.7
Q ss_pred EEEcCCCCCeEEEEEccCC----------CcEEEEEeCCCeEEEEecCCCC---eeeE----------------------
Q 007855 290 HTWSGHTKGVSAIRFFPKY----------GHLILSAGMDTKVKIWDVFNSG---KCMR---------------------- 334 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~----------g~~L~sgs~Dg~I~iWd~~~~~---~~~~---------------------- 334 (587)
+.+--|...|..|.-.|-+ ...+++|+.|++|+||++. .+ ...+
T Consensus 363 ~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~-~ctnn~vyrRNils~~l~ki~y~d~~~q~~~ 441 (1080)
T KOG1408|consen 363 SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLA-FCTNNQVYRRNILSANLSKIPYEDSTQQIMH 441 (1080)
T ss_pred eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecc-cccccceeecccchhhhhcCccccCchhhhh
Confidence 4555688888888766621 2368999999999999983 21 1100
Q ss_pred ------------EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEE
Q 007855 335 ------------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 335 ------------~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~s 401 (587)
...+....|++++.+|+|++|++|..-|+|+||++...+....+..+ ..+.|+.++.......+|++
T Consensus 442 d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLAS 521 (1080)
T KOG1408|consen 442 DASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLAS 521 (1080)
T ss_pred hccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhh
Confidence 00123456999999999999999999999999999988776666544 34557777665555678999
Q ss_pred EeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCC--CEEEEEECCCCEEEEECCCCeEEEEeec----CCCcceeE
Q 007855 402 GMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNN--RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHSMPS 474 (587)
Q Consensus 402 g~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~--~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~~~i~~ 474 (587)
++.|..|.+||+... .+++++.+|...|+++.|.-+| ..+++++.|+.|.+--.+.......+.. .....+..
T Consensus 522 asrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYD 601 (1080)
T KOG1408|consen 522 ASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYD 601 (1080)
T ss_pred ccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEE
Confidence 999999999999654 6788999999999999999877 7799999999886644432221222211 13346889
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
|++.|+.+++++++.|..|+||++.++++...++.-.+| .+....+...|.|.||++.+.|.+|.|+|+-+|+++..+
T Consensus 602 m~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~--eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m 679 (1080)
T KOG1408|consen 602 MAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDH--EGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQM 679 (1080)
T ss_pred eeeCCCcceEEEEecccceEEEeccccceeeeecccccC--CCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhh
Confidence 999999999999999999999999999887666655555 577788999999999999999999999999999999999
Q ss_pred ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 555 KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 555 ~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.+|...|+++.|.+ +-+.|++++.||.|.||
T Consensus 680 ~GHsE~VTG~kF~n-DCkHlISvsgDgCIFvW 710 (1080)
T KOG1408|consen 680 TGHSEAVTGVKFLN-DCKHLISVSGDGCIFVW 710 (1080)
T ss_pred cCcchheeeeeecc-cchhheeecCCceEEEE
Confidence 99999999999999 78899999999999999
No 85
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.6e-25 Score=217.55 Aligned_cols=276 Identities=19% Similarity=0.365 Sum_probs=217.8
Q ss_pred ccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC
Q 007855 249 VEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN 328 (587)
Q Consensus 249 ~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~ 328 (587)
....+.+++++..|.+.-.|...+.. -.++.+++.||..+|..|.|||+ .++|++|+.|..+.+||+ .
T Consensus 232 FS~nGkyLAsaSkD~Taiiw~v~~d~----------~~kl~~tlvgh~~~V~yi~wSPD-dryLlaCg~~e~~~lwDv-~ 299 (519)
T KOG0293|consen 232 FSHNGKYLASASKDSTAIIWIVVYDV----------HFKLKKTLVGHSQPVSYIMWSPD-DRYLLACGFDEVLSLWDV-D 299 (519)
T ss_pred EcCCCeeEeeccCCceEEEEEEecCc----------ceeeeeeeecccCceEEEEECCC-CCeEEecCchHheeeccC-C
Confidence 45556677777777777777665422 15788999999999999999999 899999999999999999 7
Q ss_pred CCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCC
Q 007855 329 SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 329 ~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~d 405 (587)
++.+.+.+. +|...+.+++|.|||..|++|+.|++|..||++.. .+.....-. .+..+++.+++ ..+++.+.|
T Consensus 300 tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dg---k~vl~v~~d 375 (519)
T KOG0293|consen 300 TGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDG---KYVLLVTVD 375 (519)
T ss_pred cchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCC---cEEEEEecc
Confidence 888777765 45688999999999999999999999999999743 344444333 34456666654 467777899
Q ss_pred CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc--ceeEEEEeC-CCC
Q 007855 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--SMPSISLHP-NTN 482 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--~i~~i~~sp-~g~ 482 (587)
..|++++..+......+ ....+|++++++.+++++++.-.+..|.+||+.....+..+.. |.. -+..-||.- +..
T Consensus 376 ~~i~l~~~e~~~dr~li-se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~G-hkq~~fiIrSCFgg~~~~ 453 (519)
T KOG0293|consen 376 KKIRLYNREARVDRGLI-SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFG-HKQGHFIIRSCFGGGNDK 453 (519)
T ss_pred cceeeechhhhhhhccc-cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhc-ccccceEEEeccCCCCcc
Confidence 99999998876554433 3457899999999999999999999999999997766655542 332 344445543 558
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCC
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t 547 (587)
++++||.|+.|+||+..++..+ ..+.|| ...+.+++|+|.. .++|+++.||+|+||-...
T Consensus 454 fiaSGSED~kvyIWhr~sgkll---~~LsGH--s~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 454 FIASGSEDSKVYIWHRISGKLL---AVLSGH--SKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred eEEecCCCceEEEEEccCCcee---EeecCC--cceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999888655 567888 4778999999954 5689999999999998653
No 86
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=1.6e-24 Score=213.43 Aligned_cols=280 Identities=19% Similarity=0.317 Sum_probs=234.8
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
..+|+++...|. ...+++|+.|..+.++|. ...+.+.+|.||...|+.+.|+++...+++++.|..|+||........
T Consensus 219 ~pgi~ald~~~s-~~~ilTGG~d~~av~~d~-~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~ 296 (506)
T KOG0289|consen 219 TPGITALDIIPS-SSKILTGGEDKTAVLFDK-PSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEP 296 (506)
T ss_pred CCCeeEEeecCC-CCcceecCCCCceEEEec-chhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCc
Confidence 357889988887 789999999999999999 789999999999999999999999999999999999999998776654
Q ss_pred EEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc--CCCCeeEEEEecCCCEEEEEECCCCEEE
Q 007855 376 RTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 376 ~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~--h~~~I~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
..... ...+..+..++.+ .+|++++.|+...+.|++++..+..... ..-.++++.|+|||..|.+|..|+.|+|
T Consensus 297 ~~~~~h~~~V~~ls~h~tg---eYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 297 TSSRPHEEPVTGLSLHPTG---EYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cccccccccceeeeeccCC---cEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 44443 3445566667655 5899999999999999999987766543 2345899999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE
Q 007855 453 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 453 wd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
||+..+.....+. +|.++|..++|+.||-||++++.|+.|++||++..... +.+.-.. ...+.++.|.+.|.||+
T Consensus 374 wdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~---kt~~l~~-~~~v~s~~fD~SGt~L~ 448 (506)
T KOG0289|consen 374 WDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF---KTIQLDE-KKEVNSLSFDQSGTYLG 448 (506)
T ss_pred EEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc---ceeeccc-cccceeEEEcCCCCeEE
Confidence 9999988777775 59999999999999999999999999999999865433 3332222 12477899999999999
Q ss_pred EEcCCCcEEEEeC--CCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 533 SGDGEGKCWFWDW--KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 533 sgs~dG~I~vwd~--~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+++.+=+|++++- ++..++..+..|.+..+++.|.. ...+++++|.|..++++
T Consensus 449 ~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~-~aq~l~s~smd~~l~~~ 503 (506)
T KOG0289|consen 449 IAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGE-HAQYLASTSMDAILRLY 503 (506)
T ss_pred eecceeEEEEEecccccceeeehhhhcccccceeeecc-cceEEeeccchhheEEe
Confidence 9988766777663 35677888888998899999988 66799999999998875
No 87
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=1.8e-24 Score=200.64 Aligned_cols=271 Identities=18% Similarity=0.229 Sum_probs=229.0
Q ss_pred CCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEE
Q 007855 244 EKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 323 (587)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 323 (587)
.......-.++-+++...|..++.|....... ..-..++||.+.|-.++|+|....+|++++.|.+|++
T Consensus 23 v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-----------~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~ 91 (313)
T KOG1407|consen 23 VHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-----------RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRI 91 (313)
T ss_pred ceEEEEcccCceeeecccCCceEEEEecchhh-----------hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEE
Confidence 33344455666678888899999998776521 1123567999999999999998999999999999999
Q ss_pred EecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEe
Q 007855 324 WDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 403 (587)
Q Consensus 324 Wd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 403 (587)
||+ ..+++.......... .-+.|+|+|.+++.++.|..|.+.|.++.+.+...+......-++|...+ ++|+...
T Consensus 92 wd~-r~~k~~~~i~~~~en-i~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n---d~Fflt~ 166 (313)
T KOG1407|consen 92 WDI-RSGKCTARIETKGEN-INITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN---DLFFLTN 166 (313)
T ss_pred EEe-ccCcEEEEeeccCcc-eEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC---CEEEEec
Confidence 999 788888777654444 46789999999999999999999999999999888877777777777432 5777777
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCE
Q 007855 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 483 (587)
Q Consensus 404 ~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 483 (587)
..|.|.|......+.++.++.|.....||.|+|+|++|++|+.|..+.+||+....+.+.+.. +.-+|..+.|+.+|++
T Consensus 167 GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~ 245 (313)
T KOG1407|consen 167 GLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRM 245 (313)
T ss_pred CCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcce
Confidence 789999999999999999999999999999999999999999999999999999999888865 7889999999999999
Q ss_pred EEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 484 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 484 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
||++|.|..|-|=++.++.++..++. .+....++|+|...+||-++.|
T Consensus 246 lASaSEDh~IDIA~vetGd~~~eI~~------~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 246 LASASEDHFIDIAEVETGDRVWEIPC------EGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccCccceEEeEecccCCeEEEeec------cCCceeEEecCCCceeeEEecC
Confidence 99999999999999999877654433 4556679999999999877654
No 88
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.94 E-value=4.3e-26 Score=227.49 Aligned_cols=249 Identities=18% Similarity=0.346 Sum_probs=211.3
Q ss_pred CCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCC-CcEEEEeecCCcc-eEEEEccCCCCCcEEEEEeCC
Q 007855 329 SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 329 ~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~d 405 (587)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++.. +.++++|..+..+ ..++|+..+ ..|++++.|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g---~~fLS~sfD 279 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG---TSFLSASFD 279 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC---Ceeeeeecc
Confidence 5677889999999999999999 899999999999999999977 8899999866543 456666654 469999999
Q ss_pred CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC-CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEE
Q 007855 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 484 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l 484 (587)
+.|++||+.+|+++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++.+..+. .|...|..+.|-++|..+
T Consensus 280 ~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~g~rF 357 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDEGRRF 357 (503)
T ss_pred eeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccCCceE
Confidence 999999999999999885 44678999999998 889999999999999999999777664 488899999999999999
Q ss_pred EEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC---eeEEEEecCC--C
Q 007855 485 AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---KVFRTLKCHE--G 559 (587)
Q Consensus 485 ~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~---~~~~~l~~h~--~ 559 (587)
++.+.|+.++||+.+....+.......-| ...++..+|++.++++=+.+..|.+|.+... .....+.+|. +
T Consensus 358 issSDdks~riWe~~~~v~ik~i~~~~~h----smP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaG 433 (503)
T KOG0282|consen 358 ISSSDDKSVRIWENRIPVPIKNIADPEMH----TMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAG 433 (503)
T ss_pred eeeccCccEEEEEcCCCccchhhcchhhc----cCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccC
Confidence 99999999999998876655443333323 3446899999999999999999999987542 3345677776 4
Q ss_pred CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 560 VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
--..|.|+| ++++|++|+.||.+.+||
T Consensus 434 ys~~v~fSp-DG~~l~SGdsdG~v~~wd 460 (503)
T KOG0282|consen 434 YSCQVDFSP-DGRTLCSGDSDGKVNFWD 460 (503)
T ss_pred ceeeEEEcC-CCCeEEeecCCccEEEee
Confidence 457789999 888999999999999997
No 89
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.94 E-value=1.7e-24 Score=224.16 Aligned_cols=278 Identities=18% Similarity=0.339 Sum_probs=227.8
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee--EEEcccCCceee-EEEec-CCCeEEEEeCC
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM--RTYMGHSKAVRD-ISFCN-DGTKFLTASYD 361 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~-l~fs~-dg~~l~s~s~D 361 (587)
.++.+.+.||...|..+++.+. -.++++|.||++++|+- ...+.+ ..+.+|.+.|.+ +++.+ ++-.|++|+.|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~--~~i~s~sRd~t~~vw~~-~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D 80 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDG--VCIISGSRDGTVKVWAK-KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMD 80 (745)
T ss_pred ceeEEEeccCccchheeEecCC--eEEeecCCCCceeeeec-cCcccccceecccCcceeeccceeccccCcceEeeccc
Confidence 4678999999999999998765 58999999999999997 333322 457788888887 88886 55579999999
Q ss_pred CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 362 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
.+|.+|.+.+..++..+..+.... ++++...+ ..+++|+.|.++++|-+ +++...+.+|...|.++...|++ .+
T Consensus 81 ~~i~v~~~~~~~P~~~LkgH~snV-C~ls~~~~--~~~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~ 154 (745)
T KOG0301|consen 81 TTIIVFKLSQAEPLYTLKGHKSNV-CSLSIGED--GTLISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TY 154 (745)
T ss_pred ceEEEEecCCCCchhhhhccccce-eeeecCCc--CceEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cE
Confidence 999999999999999987665543 33443322 23999999999999965 55666799999999999999988 89
Q ss_pred EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEE
Q 007855 442 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
+|||.|++|++|.- +..++.+. +|...|..+++-+++ .|++++.||.|++|++.. ..+ ..+.+| ..++.+
T Consensus 155 vTgsaDKtIklWk~--~~~l~tf~-gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~g-e~l---~~~~gh--tn~vYs 224 (745)
T KOG0301|consen 155 VTGSADKTIKLWKG--GTLLKTFS-GHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDG-EVL---LEMHGH--TNFVYS 224 (745)
T ss_pred EeccCcceeeeccC--Cchhhhhc-cchhheeeeEEecCC-CeEeecCCceEEEEeccC-cee---eeeecc--ceEEEE
Confidence 99999999999985 55666665 599999999999775 578889999999999944 333 455666 567778
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 522 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 522 l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++...++..+++++.|++++||+.. .+.+.+......|+++.+.+ ++ -|++|++||.|+||
T Consensus 225 is~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~-Ng-DIvvg~SDG~VrVf 285 (745)
T KOG0301|consen 225 ISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLL-NG-DIVVGGSDGRVRVF 285 (745)
T ss_pred EEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEee-CC-CEEEeccCceEEEE
Confidence 8888889999999999999999976 77888886677899999887 44 48999999999998
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=230.29 Aligned_cols=318 Identities=18% Similarity=0.295 Sum_probs=243.4
Q ss_pred cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC-
Q 007855 252 KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG- 330 (587)
Q Consensus 252 ~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~- 330 (587)
...++.++++|.+.|.|....... ......+.+++.|+..|+.|+..-+ ++.|+|+|.|.+|++|+....+
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~-------~~s~~~~asme~HsDWVNDiiL~~~-~~tlIS~SsDtTVK~W~~~~~~~ 107 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSN-------EPSTPYIASMEHHSDWVNDIILCGN-GKTLISASSDTTVKVWNAHKDNT 107 (735)
T ss_pred CCceEEecCCCceEEEeccccccC-------CcccchhhhhhhhHhHHhhHHhhcC-CCceEEecCCceEEEeecccCcc
Confidence 334678999999999997654332 1222356789999999999999988 8899999999999999994333
Q ss_pred eeeEEEcccCCceeeEEE-ecCCCeEEEEeCCCeEEEEECCCC--cEEEEeec--------C--CcceEEEEccCCCCCc
Q 007855 331 KCMRTYMGHSKAVRDISF-CNDGTKFLTASYDKNIKYWDTETG--QVIRTFST--------G--KIPYVVKLNPDDDKQN 397 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~f-s~dg~~l~s~s~Dg~I~vWd~~t~--~~i~~~~~--------~--~~~~~~~~~~~~~~~~ 397 (587)
-|+.++..|.+-|.|+++ .++...+++|+.|+.|.|||+.++ +.+.++.. + ..++.++..+. +.
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t---~t 184 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQT---GT 184 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCc---ce
Confidence 788899999999999999 778889999999999999999988 33433321 1 23445555543 36
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEE
Q 007855 398 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~ 477 (587)
+|++|+..+.|++||.++++.+..+.+|...|.++..+++|.+++++|.||+|++||++..+++..+.. |...|.++..
T Consensus 185 ~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~v-H~e~VWaL~~ 263 (735)
T KOG0308|consen 185 IIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIV-HKEGVWALQS 263 (735)
T ss_pred EEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEe-ccCceEEEee
Confidence 899999999999999999999999999999999999999999999999999999999999999988764 7778999999
Q ss_pred eCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-------ee
Q 007855 478 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-------KV 550 (587)
Q Consensus 478 sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~-------~~ 550 (587)
+|+-.++++|+.||.|..=|+++......+..- ..++..+..+...+-+.+++.|+.|.-|...-. .+
T Consensus 264 ~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~-----daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~ 338 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE-----DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDL 338 (735)
T ss_pred CCCcceEEecCCCCcEEecccCCchhheEeecC-----CCchhhhhhccccCCceeeeccccceecCCccccccccCCCC
Confidence 999999999999999999999874222111111 122333555544444577778888888865321 11
Q ss_pred EEEEe----------------cCC-CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 551 FRTLK----------------CHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 551 ~~~l~----------------~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..... .|. ..|...+... +.+.++|=...|.+.+||
T Consensus 339 ~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~-dkRhVlTkDa~gnv~lwD 391 (735)
T KOG0308|consen 339 DFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLN-DKRHVLTKDAKGNVALWD 391 (735)
T ss_pred CcccccCCCccccccCCCceeccCchhhhhhhhhc-CcceEeeecCCCCEEEEE
Confidence 10000 011 1233344444 677999999999999998
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=8.2e-24 Score=210.01 Aligned_cols=283 Identities=18% Similarity=0.294 Sum_probs=230.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC-CeeeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEEEEECCCCc
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS-GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQ 373 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~vWd~~t~~ 373 (587)
.++|++|.|+|. ..+|++|+.|++++||.+... ...++.+.-...+|.+.+|.|+|. .+++++....+..||+++.+
T Consensus 213 ~~~I~sv~FHp~-~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak 291 (514)
T KOG2055|consen 213 HGGITSVQFHPT-APLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK 291 (514)
T ss_pred cCCceEEEecCC-CceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence 468999999999 899999999999999998322 245566666778999999999999 89999999999999999887
Q ss_pred EEEEeecC--C--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 374 VIRTFSTG--K--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 374 ~i~~~~~~--~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
....-... . ......+++++ ++|+..+..|.|.+....+++.+..++ -.+.|..++|+.+++.|++++.+|.
T Consensus 292 ~~k~~~~~g~e~~~~e~FeVShd~---~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsSdsk~l~~~~~~Ge 367 (514)
T KOG2055|consen 292 VTKLKPPYGVEEKSMERFEVSHDS---NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSSDSKELLASGGTGE 367 (514)
T ss_pred cccccCCCCcccchhheeEecCCC---CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEecCCcEEEEEcCCce
Confidence 65443322 2 22234444543 589999999999999999999998886 5688999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee---ecccceecccccccceEEEEEcC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
|.+||++...++..+.....-.-+++|.++++.|||+|+..|.|.|||..+... ..+.+.+.. ....|+++.|++
T Consensus 368 V~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN--Ltt~Itsl~Fn~ 445 (514)
T KOG2055|consen 368 VYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN--LTTAITSLQFNH 445 (514)
T ss_pred EEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh--hheeeeeeeeCc
Confidence 999999999999888765555667889999999999999999999999654322 122222222 245688899999
Q ss_pred CCCEEEEEcC--CCcEEEEeCCCCeeEEEEecCC---CCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 527 DGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHE---GVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 527 dg~~L~sgs~--dG~I~vwd~~t~~~~~~l~~h~---~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++++|+.++. ...+++-.+.+......+.... +.|+|++|+| .+.+|+.|..+|.+.+|
T Consensus 446 d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP-~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 446 DAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSP-NSGYLAVGNEAGRVHLF 509 (514)
T ss_pred chhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecC-CCceEEeecCCCceeeE
Confidence 9999988774 5679999999998888876543 4789999999 77799999999999999
No 92
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.93 E-value=3.3e-24 Score=203.55 Aligned_cols=273 Identities=18% Similarity=0.264 Sum_probs=219.7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
...|++|.|+|. +..|+.++.||++++|++ ... .++....|..++.+++|.+ ...+++|+.||.|+++|+.++...
T Consensus 13 ~d~IS~v~f~~~-~~~LLvssWDgslrlYdv-~~~-~l~~~~~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 13 EDGISSVKFSPS-SSDLLVSSWDGSLRLYDV-PAN-SLKLKFKHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred hhceeeEEEcCc-CCcEEEEeccCcEEEEec-cch-hhhhheecCCceeeeeccC-CceEEEeccCceEEEEEecCCcce
Confidence 467999999988 667777779999999999 444 3334446999999999996 567999999999999999999988
Q ss_pred EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEEC
Q 007855 376 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~ 455 (587)
..-.+.....|+...+.. +.+++|+.|++|++||.+....+..+.. ...|.|+... ++.|++|+.+..|.+||+
T Consensus 89 ~igth~~~i~ci~~~~~~---~~vIsgsWD~~ik~wD~R~~~~~~~~d~-~kkVy~~~v~--g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 89 QIGTHDEGIRCIEYSYEV---GCVISGSWDKTIKFWDPRNKVVVGTFDQ-GKKVYCMDVS--GNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred eeccCCCceEEEEeeccC---CeEEEcccCccEEEEecccccccccccc-CceEEEEecc--CCEEEEeecCceEEEEEc
Confidence 888888888888888643 5799999999999999998666666653 3488888876 779999999999999999
Q ss_pred CCCeEEEEe-ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCc-eeecccceecccc-------cccceEEEEEcC
Q 007855 456 GIPVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-FQLNKKKRFAGHI-------VAGYACQVNFSP 526 (587)
Q Consensus 456 ~~~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~-~~~~~~~~~~~~~-------~~~~i~~l~~sp 526 (587)
++....... .......+.|+++.|++.-+++++-+|.|.+=.+... ........|+.|. ..-+|.+++|+|
T Consensus 163 Rn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp 242 (323)
T KOG1036|consen 163 RNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHP 242 (323)
T ss_pred ccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecc
Confidence 986544322 2345667899999999888999999999988655443 1122223333332 234588899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
--..|++|+.||.|.+||+.+.+.+..+......|.+++|+. ++.+||.++.
T Consensus 243 ~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~-dG~~LAia~s 294 (323)
T KOG1036|consen 243 IHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSM-DGSLLAIASS 294 (323)
T ss_pred ccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEecc-CCCeEEEEec
Confidence 999999999999999999999999999887778899999999 7788888874
No 93
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.3e-25 Score=208.20 Aligned_cols=289 Identities=19% Similarity=0.365 Sum_probs=233.1
Q ss_pred ccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 237 DKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
..|+..++.......+..+.++.+.|.+.|+|-... .+|+.+|.||.+.|+||.|++. +.++++++
T Consensus 144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-------------g~CL~~Y~GH~GSVNsikfh~s-~~L~lTaS 209 (481)
T KOG0300|consen 144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLES-------------GACLATYTGHTGSVNSIKFHNS-GLLLLTAS 209 (481)
T ss_pred hcccccceeeehhhcCCcceeecccccceeEEeecc-------------ccceeeecccccceeeEEeccc-cceEEEcc
Confidence 346666677666777777889999999999995543 5678899999999999999999 99999999
Q ss_pred CCCeEEEEec------CC-----------------------------C----CeeeEEEcccCCceeeEEEecCCCeEEE
Q 007855 317 MDTKVKIWDV------FN-----------------------------S----GKCMRTYMGHSKAVRDISFCNDGTKFLT 357 (587)
Q Consensus 317 ~Dg~I~iWd~------~~-----------------------------~----~~~~~~~~~h~~~V~~l~fs~dg~~l~s 357 (587)
.|++..||.. .. . ..++..+.+|...|.+..|...|+.+++
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT 289 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence 9999999962 00 0 1245567899999999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEeecCCcce-EEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEe
Q 007855 358 ASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~s 435 (587)
++.|++..+||+++|.++..+..+.... -++.+| .+.++++.+.|.+.++||++.. ..+..|++|...|+++.|.
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp---tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~ 366 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP---TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN 366 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCC---cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEe
Confidence 9999999999999999999998765443 233333 4579999999999999999854 4577899999999999998
Q ss_pred cCCCEEEEEECCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc--eecc
Q 007855 436 DNNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK--RFAG 512 (587)
Q Consensus 436 p~~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~--~~~~ 512 (587)
-+. .+++|++|.+|+|||+++.. ++..+. ...++..++++..+..|+.--.+.+|++||+... ++..+. .-.+
T Consensus 367 ~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~-RlaRlPrtsRqg 442 (481)
T KOG0300|consen 367 TDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN-RLARLPRTSRQG 442 (481)
T ss_pred cCC-ceeecCCCceEEEeeeccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCCC-ccccCCcccccc
Confidence 654 68999999999999998764 444442 5668899999988889999999999999999754 333333 2334
Q ss_pred cccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCCCC
Q 007855 513 HIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~--~L~sgs~dG~I~vwd~~t~ 548 (587)
| ...++|++|..+-. -|++++-|..+.-|.+...
T Consensus 443 H--rRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 443 H--RRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred c--ceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 4 56789999976543 4778888999999988654
No 94
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.2e-25 Score=219.64 Aligned_cols=246 Identities=22% Similarity=0.366 Sum_probs=204.7
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIK 365 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~ 365 (587)
..+.++....+.|.++.|-.+ |.+|+.|...|.|+|||. ++...++.+.+|..+|..+.|+| ++..|++|+.|+.++
T Consensus 59 ~~~k~~srFk~~v~s~~fR~D-G~LlaaGD~sG~V~vfD~-k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k 136 (487)
T KOG0310|consen 59 SVRKTFSRFKDVVYSVDFRSD-GRLLAAGDESGHVKVFDM-KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVK 136 (487)
T ss_pred hhhhhHHhhccceeEEEeecC-CeEEEccCCcCcEEEecc-ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEE
Confidence 344556667789999999999 999999999999999996 77888999999999999999999 567888899999999
Q ss_pred EEECCCCcEEEEeecCCcce--EEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 366 YWDTETGQVIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
+||+.+......+ .++..+ |..++| ...+++++|+.||.|++||+++. ..+.++. |..+|..+.+.|.|..|+
T Consensus 137 ~~d~s~a~v~~~l-~~htDYVR~g~~~~--~~~hivvtGsYDg~vrl~DtR~~~~~v~eln-hg~pVe~vl~lpsgs~ia 212 (487)
T KOG0310|consen 137 YWDLSTAYVQAEL-SGHTDYVRCGDISP--ANDHIVVTGSYDGKVRLWDTRSLTSRVVELN-HGCPVESVLALPSGSLIA 212 (487)
T ss_pred EEEcCCcEEEEEe-cCCcceeEeecccc--CCCeEEEecCCCceEEEEEeccCCceeEEec-CCCceeeEEEcCCCCEEE
Confidence 9999998863344 344444 555555 45589999999999999999987 6666774 999999999999999999
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEE
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
+++. ..|+|||+-++.........|...|+|+++..++..|++++.|+.|++||+.+...+.. -...++|.++
T Consensus 213 sAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s------~~~~~pvLsi 285 (487)
T KOG0310|consen 213 SAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHS------WKYPGPVLSI 285 (487)
T ss_pred EcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEe------eecccceeeE
Confidence 9875 57999999866555444445999999999999999999999999999999765433322 2225778889
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeC
Q 007855 523 NFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
+.+|+++.++.|..+|.+.+-+.
T Consensus 286 avs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 286 AVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EecCCCceEEEecccceeeeehh
Confidence 99999999999999999887744
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=1.1e-25 Score=207.28 Aligned_cols=253 Identities=22% Similarity=0.361 Sum_probs=212.2
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
..--+-+|.||.+.|....+..+ ....++++.|-+-+|||. -++..+..|. |..-|..++|+.|.++|++|+.+..+
T Consensus 48 tgdwigtfeghkgavw~~~l~~n-a~~aasaaadftakvw~a-~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekll 124 (334)
T KOG0278|consen 48 TGDWIGTFEGHKGAVWSATLNKN-ATRAASAAADFTAKVWDA-VTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLL 124 (334)
T ss_pred CCCcEEeeeccCcceeeeecCch-hhhhhhhcccchhhhhhh-hhhhhhhhhh-hhheeeeEEecccchhhhccchHHHh
Confidence 34568899999999999999988 788899999999999998 7888888774 88899999999999999999999999
Q ss_pred EEEECCCCcE-EEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 365 KYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 365 ~vWd~~t~~~-i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
+|+|++..+. ...+..+ ..+..+.|+..+ +.|++...|+.|++||.+++..++++. ...+|+++.++++|++|.
T Consensus 125 rvfdln~p~App~E~~ghtg~Ir~v~wc~eD---~~iLSSadd~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilT 200 (334)
T KOG0278|consen 125 RVFDLNRPKAPPKEISGHTGGIRTVLWCHED---KCILSSADDKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILT 200 (334)
T ss_pred hhhhccCCCCCchhhcCCCCcceeEEEeccC---ceEEeeccCCceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEE
Confidence 9999987543 3333322 233344444432 468888999999999999999999986 668999999999997655
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEE
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
+ ...+.|.+||..+...++... ....|.+.+++|+...+++|+.|..++.||..++..+... .++| .+.|.++
T Consensus 201 i-a~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~--nkgh--~gpVhcV 273 (334)
T KOG0278|consen 201 I-AYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY--NKGH--FGPVHCV 273 (334)
T ss_pred E-ecCceeEEeccccccceeecc--CccccccccccCCCceEEecCcceEEEEEeccCCceeeec--ccCC--CCceEEE
Confidence 5 456789999999999888874 4557899999999999999999999999999998776442 3566 5789999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007855 523 NFSPDGRFVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
.|+|+|...++|+.||+|++|....++..
T Consensus 274 rFSPdGE~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 274 RFSPDGELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred EECCCCceeeccCCCceEEEEEecCCCch
Confidence 99999999999999999999998776654
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.3e-25 Score=220.40 Aligned_cols=278 Identities=15% Similarity=0.306 Sum_probs=228.7
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEc--ccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
.|..-|.++.++.. .+.++||+. |.|+|||+...+ .++..+. .....|+++..+|||+.|++|+.-.++.|||+
T Consensus 417 ~HGEvVcAvtIS~~-trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL 494 (705)
T KOG0639|consen 417 AHGEVVCAVTISNP-TRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL 494 (705)
T ss_pred ccCcEEEEEEecCC-cceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence 58888999999988 788999885 889999995433 2333332 24567999999999999999999999999999
Q ss_pred CCCcEEEEeecCC---cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 370 ETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 370 ~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
............. ..+.++++++. ++.++++.||.|.|||+.+...++.|.+|.+.+.||.++++|..|.+|+-
T Consensus 495 AapTprikaeltssapaCyALa~spDa---kvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 495 AAPTPRIKAELTSSAPACYALAISPDA---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred cCCCcchhhhcCCcchhhhhhhcCCcc---ceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCC
Confidence 8765443333222 23445556644 68999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
|.+||.||++.+..+... .....|.++..+|++.+|++|-.++.+.|....... .+.-|.....|.++.|++
T Consensus 572 DntvRcWDlregrqlqqh--dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~------kyqlhlheScVLSlKFa~ 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQQH--DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE------KYQLHLHESCVLSLKFAY 643 (705)
T ss_pred ccceeehhhhhhhhhhhh--hhhhhheecccCCCccceeeecccCcEEEEecCCcc------ceeecccccEEEEEEecc
Confidence 999999999988766543 356689999999999999999999999998775432 233344477899999999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.|+++++.+.|..+..|...-|..+...+ ....|.+|.++. +.++|+||+.|..-.||
T Consensus 644 cGkwfvStGkDnlLnawrtPyGasiFqsk-E~SsVlsCDIS~-ddkyIVTGSGdkkATVY 701 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAWRTPYGASIFQSK-ESSSVLSCDISF-DDKYIVTGSGDKKATVY 701 (705)
T ss_pred cCceeeecCchhhhhhccCccccceeecc-ccCcceeeeecc-CceEEEecCCCcceEEE
Confidence 99999999999999999998888777666 456799999998 77899999999877665
No 97
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.93 E-value=1.1e-23 Score=222.16 Aligned_cols=297 Identities=21% Similarity=0.327 Sum_probs=246.6
Q ss_pred ccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeE
Q 007855 276 KAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKF 355 (587)
Q Consensus 276 ~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l 355 (587)
.....+++-..+++++++++...|+++.=+|- -..++.|..+|+|.|+++ ..++.+.+|+.-.+.|+.++|..||+.+
T Consensus 182 G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPa-LDVVaiG~~~G~ViifNl-K~dkil~sFk~d~g~VtslSFrtDG~p~ 259 (910)
T KOG1539|consen 182 GRLQLWNVRTGKVVYTFQEFFSRITAIEQSPA-LDVVAIGLENGTVIIFNL-KFDKILMSFKQDWGRVTSLSFRTDGNPL 259 (910)
T ss_pred CcEEEEEeccCcEEEEecccccceeEeccCCc-ceEEEEeccCceEEEEEc-ccCcEEEEEEccccceeEEEeccCCCee
Confidence 34455777889999999999999999999998 889999999999999999 7889999998656999999999998755
Q ss_pred -EEEeCCCeEEEEECCCCcEEEEeecC------------------------------------------------Cc---
Q 007855 356 -LTASYDKNIKYWDTETGQVIRTFSTG------------------------------------------------KI--- 383 (587)
Q Consensus 356 -~s~s~Dg~I~vWd~~t~~~i~~~~~~------------------------------------------------~~--- 383 (587)
++|+..|.+.+||++..+.+...... .+
T Consensus 260 las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~ 339 (910)
T KOG1539|consen 260 LASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSC 339 (910)
T ss_pred EEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchh
Confidence 55666699999999754332221100 00
Q ss_pred --------------------------------------------------------------------------------
Q 007855 384 -------------------------------------------------------------------------------- 383 (587)
Q Consensus 384 -------------------------------------------------------------------------------- 383 (587)
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~ 419 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHK 419 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEec
Confidence
Q ss_pred -------------------------------ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCCCe
Q 007855 384 -------------------------------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAV 429 (587)
Q Consensus 384 -------------------------------~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~~I 429 (587)
..+++.++ -+++.+.|++.|.|-+|++++|-....| ..|.++|
T Consensus 420 ~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~---CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V 496 (910)
T KOG1539|consen 420 GKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF---CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEV 496 (910)
T ss_pred CcceEEEEeccCcccccEEecCccccccCcceEEEEEec---cCceEEEeccCCeEEEEEcccCeeecccccCccccCce
Confidence 00111111 1345777888999999999999888888 4799999
Q ss_pred eEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce
Q 007855 430 NTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 509 (587)
++++...-++.+++++.+|.+.+||+.....+..+. ...++.++..+.....++++..|-.|+++|..+... .+.
T Consensus 497 ~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~--l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv---vR~ 571 (910)
T KOG1539|consen 497 TGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR--LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV---VRE 571 (910)
T ss_pred eEEEecCCCceEEEccCcceEEEEecCCcceeeeec--cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh---hHH
Confidence 999999889999999999999999999998777774 566889999999999999999999999999987644 366
Q ss_pred ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC-CcEEEc
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD-GLIKYW 586 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D-G~I~iW 586 (587)
+.|| ...|++++|||||++|++++.|++|++||+.++.++-.+. -..+++++.|+| ++.+|||...| .-|++|
T Consensus 572 f~gh--~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~-vd~~~~sls~SP-ngD~LAT~Hvd~~gIylW 645 (910)
T KOG1539|consen 572 FWGH--GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL-VDSPCTSLSFSP-NGDFLATVHVDQNGIYLW 645 (910)
T ss_pred hhcc--ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe-cCCcceeeEECC-CCCEEEEEEecCceEEEE
Confidence 7778 5779999999999999999999999999999999988876 566899999999 88899999998 568888
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=4.8e-24 Score=202.62 Aligned_cols=291 Identities=17% Similarity=0.297 Sum_probs=214.1
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC----CeeeEEEcccCCceeeEEEecCCCeEEE-EeCCC
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK 362 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~l~s-~s~Dg 362 (587)
.+.+|+||.+.|++++|+.+ |+.|+|++.|++|+||++..- .++++.-. .-+.-+.+.|+||-+-++. +-...
T Consensus 78 ~~~~LKgH~~~vt~~~FsSd-GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~ 155 (420)
T KOG2096|consen 78 NVSVLKGHKKEVTDVAFSSD-GKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGN 155 (420)
T ss_pred hhhhhhccCCceeeeEEcCC-CceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCC
Confidence 45689999999999999999 999999999999999998321 12222211 1224578899998776554 44556
Q ss_pred eEEEEECCC---CcEEE--------EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeE
Q 007855 363 NIKYWDTET---GQVIR--------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 431 (587)
Q Consensus 363 ~I~vWd~~t---~~~i~--------~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~ 431 (587)
++++|-+.. |.... .|...+...++.+-.. .+..+|++++.|..|.+|+++ |+.++.+......-+.
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA-~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~ 233 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA-GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYD 233 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEeec-CCceEEEEecCCCcEEEEecC-Cceeeeeccccccccc
Confidence 799987642 21111 1222233333333222 345789999999999999999 9999999888888889
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCC---C--eEE-E-EeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGI---P--VVI-K-YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~---~--~~~-~-~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
.+.+|+|+++++++----|++|.+-- + +.+ + ....+|...|..++|+++...+++.|.||.++|||+.-....
T Consensus 234 aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 234 AAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999999999998621 1 111 1 112468999999999999999999999999999997543221
Q ss_pred ----ccccee--cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCCEEEEEEcCCCCCEEEEE
Q 007855 505 ----NKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 505 ----~~~~~~--~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~ 577 (587)
..++.. .-+...+.-+.+.++|.|+.|+..... .|.++..++|+.+-.+. .|...|.+++|++ ++.+++||
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~atc 391 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIATC 391 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEeee
Confidence 112222 122234445689999999999877644 79999999998887774 6999999999999 88899999
Q ss_pred ECCCcEEE
Q 007855 578 GWDGLIKY 585 (587)
Q Consensus 578 g~DG~I~i 585 (587)
| |..+++
T Consensus 392 G-dr~vrv 398 (420)
T KOG2096|consen 392 G-DRYVRV 398 (420)
T ss_pred c-ceeeee
Confidence 9 555655
No 99
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=230.25 Aligned_cols=247 Identities=17% Similarity=0.295 Sum_probs=195.0
Q ss_pred EEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE-----------------------EE--------E-----
Q 007855 335 TYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-----------------------IR--------T----- 377 (587)
Q Consensus 335 ~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~-----------------------i~--------~----- 377 (587)
.+. .|.++|.++.|++||+|||+||.|+.|+||.+...+. .. .
T Consensus 261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~ 340 (712)
T KOG0283|consen 261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR 340 (712)
T ss_pred ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence 344 7999999999999999999999999999998754000 00 0
Q ss_pred ---------ee--------------cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEE
Q 007855 378 ---------FS--------------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 434 (587)
Q Consensus 378 ---------~~--------------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~ 434 (587)
+. .+|..-++.+++. +.++|++++.|.+|++|++....++..|. |..-|+||+|
T Consensus 341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWS--Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaF 417 (712)
T KOG0283|consen 341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWS--KNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAF 417 (712)
T ss_pred cccCCccccCCCccccccccchhhhhccchhheecccc--cCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEe
Confidence 00 0223334555553 34789999999999999999999999995 9999999999
Q ss_pred ec-CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec--
Q 007855 435 VD-NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-- 511 (587)
Q Consensus 435 sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-- 511 (587)
+| |.++|++|+-|+.||||++...+...... ...-|+++++.|+|++.++|+.+|.+++|++.............
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~ 495 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN 495 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc
Confidence 99 77899999999999999998877765542 44789999999999999999999999999987654332211110
Q ss_pred c-cccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCeeEEEEecCCC--CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 512 G-HIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 512 ~-~~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+ ......|+.+.|.|... .|++.+.|.+|+|+|.+...++..|+++.. .-....|+. ++.+|++++.|..|+||+
T Consensus 496 ~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~-Dgk~IVs~seDs~VYiW~ 574 (712)
T KOG0283|consen 496 KKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS-DGKHIVSASEDSWVYIWK 574 (712)
T ss_pred CccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc-CCCEEEEeecCceEEEEe
Confidence 0 11123699999987443 578888999999999999999999997653 345678888 888999999999999995
No 100
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=7.4e-23 Score=207.33 Aligned_cols=269 Identities=17% Similarity=0.197 Sum_probs=202.9
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeE-EEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l-~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
.+++|++.|+.|++||+ .+++++..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+..+..+..+.
T Consensus 2 ~~~~s~~~d~~v~~~d~-~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~ 79 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDT-ATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFA 79 (300)
T ss_pred cEEEEecCCCEEEEEEC-CCCceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEE
Confidence 57899999999999999 6788888887654 47889999999876 566788999999999999888776665566677
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC-CEEEEECCCCeEEEEeecC
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK-SLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~ 467 (587)
+++++. .+++++..++.|.+||+.+.+.+..+.. ...+.++.|+|++.++++++.++ .+.+||..+......+..
T Consensus 80 ~~~~g~--~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~- 155 (300)
T TIGR03866 80 LHPNGK--ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV- 155 (300)
T ss_pred ECCCCC--EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-
Confidence 776542 4455566789999999999887777653 34578899999999999998875 467789988776655432
Q ss_pred CCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceec-c-cccccceEEEEEcCCCCEEEE-EcCCCcEEEE
Q 007855 468 HMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-G-HIVAGYACQVNFSPDGRFVMS-GDGEGKCWFW 543 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~-~-~~~~~~i~~l~~spdg~~L~s-gs~dG~I~vw 543 (587)
.....+++|+|++++|++++ .++.|.+||+.++..+....... + +........++|+|+++++++ ...++.|.+|
T Consensus 156 -~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~ 234 (300)
T TIGR03866 156 -DQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVV 234 (300)
T ss_pred -CCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEE
Confidence 33457899999999886554 68999999998775543322110 0 111122346889999998655 3556789999
Q ss_pred eCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEE-ECCCcEEEcC
Q 007855 544 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 587 (587)
Q Consensus 544 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~DG~I~iWD 587 (587)
|+.+++.+..+. +...+.+++|+| ++.+|+++ +.+|.|+|||
T Consensus 235 d~~~~~~~~~~~-~~~~~~~~~~~~-~g~~l~~~~~~~~~i~v~d 277 (300)
T TIGR03866 235 DAKTYEVLDYLL-VGQRVWQLAFTP-DEKYLLTTNGVSNDVSVID 277 (300)
T ss_pred ECCCCcEEEEEE-eCCCcceEEECC-CCCEEEEEcCCCCeEEEEE
Confidence 999988876654 445789999999 66667665 5799999997
No 101
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.93 E-value=3e-24 Score=212.98 Aligned_cols=302 Identities=16% Similarity=0.220 Sum_probs=221.9
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCCC-cEEEEEeCCCeEEEEec---CCCCeeeEEEcccCCceeeEEEec-CCCeEEE
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKYG-HLILSAGMDTKVKIWDV---FNSGKCMRTYMGHSKAVRDISFCN-DGTKFLT 357 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~g-~~L~sgs~Dg~I~iWd~---~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s 357 (587)
.........++-|.+.|++++|+|... .++|+|..-|+|-+||+ .....-+..+..|+.+|.+|.|+| +...+++
T Consensus 173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s 252 (498)
T KOG4328|consen 173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS 252 (498)
T ss_pred cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence 334455567778999999999999855 79999999999999999 233445667889999999999999 6678999
Q ss_pred EeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEccCCCCeeEEEEe
Q 007855 358 ASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFV 435 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~~h~~~I~~i~~s 435 (587)
.|+||+|++-|++++..-..+... .......+.....++ .++.|..=|.+.+||++++.. ...+.-|...|++++++
T Consensus 253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~-~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESR-SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCc-cEEEeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 999999999999987544333332 222222333333333 455666666999999998754 55566788899999999
Q ss_pred cCCC-EEEEEECCCCEEEEECCCCeEEE---EeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC---Cceeecccc
Q 007855 436 DNNR-RFVTSSDDKSLRVWEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR---ERFQLNKKK 508 (587)
Q Consensus 436 p~~~-~l~s~s~Dg~I~iwd~~~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~---~~~~~~~~~ 508 (587)
|... +|+++|.|++++|||++...... ....+|..+|.+..|+|.+..|++.+.|+.|+|||.. ...... ..
T Consensus 332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~-~~ 410 (498)
T KOG4328|consen 332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPL-GT 410 (498)
T ss_pred CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcc-ce
Confidence 9665 58899999999999998643222 2223799999999999998889999999999999974 111110 01
Q ss_pred eeccccccc--ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC-CEEE-EEEcCCCCCEEEEEECCCcEE
Q 007855 509 RFAGHIVAG--YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG-VCIG-CEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 509 ~~~~~~~~~--~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~-~V~~-v~~sp~~~~~l~s~g~DG~I~ 584 (587)
....+.... ......|.|+..+|++|-.-..|-|+|-..++.+..+..... .|.+ ..|||.+..+++.++..|.|.
T Consensus 411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~ 490 (498)
T KOG4328|consen 411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIY 490 (498)
T ss_pred eeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEE
Confidence 111111111 233478999999999999999999999999998887755443 4444 489995544666666788898
Q ss_pred Ec
Q 007855 585 YW 586 (587)
Q Consensus 585 iW 586 (587)
||
T Consensus 491 vf 492 (498)
T KOG4328|consen 491 VF 492 (498)
T ss_pred EE
Confidence 88
No 102
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=5.2e-25 Score=226.35 Aligned_cols=284 Identities=21% Similarity=0.351 Sum_probs=226.3
Q ss_pred CCCCeE---EEEEccCCCcEEEEEeCCCeEEEEecCCCCe-----eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 295 HTKGVS---AIRFFPKYGHLILSAGMDTKVKIWDVFNSGK-----CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 295 H~~~V~---~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-----~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
|...|. ++..+..++++|+|||.||.|++|++..... .+..+..|...|.++....+++.|+++|.|-+|++
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 555566 6667777688999999999999999843322 47788899999999999999999999999999999
Q ss_pred EECCCC--cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--cEEE--------EEc-cCCCCeeEEE
Q 007855 367 WDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQ--------EYD-QHLGAVNTIT 433 (587)
Q Consensus 367 Wd~~t~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~~~~--------~~~-~h~~~I~~i~ 433 (587)
|+...+ -+..++..+ ..++-++.+...+..++++|+-|+.|.+||++++ +.+. .+. ++..+|.+++
T Consensus 100 W~~~~~~~~c~stir~H-~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA 178 (735)
T KOG0308|consen 100 WNAHKDNTFCMSTIRTH-KDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLA 178 (735)
T ss_pred eecccCcchhHhhhhcc-cchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeee
Confidence 999877 344555433 3333333332344578999999999999999977 2222 223 7888999999
Q ss_pred EecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccc
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 513 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 513 (587)
..+.+..|++|+..+.|++||.++...+..+. +|...|.++..+++|..+++++.||+|++||+....++. .+.-|
T Consensus 179 ~N~t~t~ivsGgtek~lr~wDprt~~kimkLr-GHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~---T~~vH 254 (735)
T KOG0308|consen 179 MNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLR-GHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA---TYIVH 254 (735)
T ss_pred cCCcceEEEecCcccceEEeccccccceeeee-ccccceEEEEEcCCCCeEeecCCCceEEeeeccccceee---eEEec
Confidence 99999999999999999999999998888876 799999999999999999999999999999998766553 34445
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 514 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 514 ~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
...+.++..+|+-.++++|+.||.|..=|+++......+--...+|..+..+.++.. +-++..|+.|+-|
T Consensus 255 --~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~-~WvtTtds~I~rW 324 (735)
T KOG0308|consen 255 --KEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNS-VWVTTTDSSIKRW 324 (735)
T ss_pred --cCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCC-ceeeeccccceec
Confidence 344888999999999999999999999999885433333335556777777754444 4777788888887
No 103
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.93 E-value=1.5e-24 Score=217.43 Aligned_cols=281 Identities=18% Similarity=0.289 Sum_probs=211.2
Q ss_pred CccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEe
Q 007855 246 GEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 325 (587)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 325 (587)
...+++.+....+++.||.++-|-+..-+.....+..+.|. ....|.+++|++. +..|++.+....++|+|
T Consensus 172 al~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~--------E~h~i~sl~ys~T-g~~iLvvsg~aqakl~D 242 (641)
T KOG0772|consen 172 ALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPC--------ETHQINSLQYSVT-GDQILVVSGSAQAKLLD 242 (641)
T ss_pred EeeecCCCceeeeccccceEEEEecccccccchhhhccCcc--------cccccceeeecCC-CCeEEEEecCcceeEEc
Confidence 34467777788999999999999988877644433333332 2346999999999 77777777788999999
Q ss_pred cCCCCeeeEE------------EcccCCceeeEEEecC-CCeEEEEeCCCeEEEEECCCCc-EEEEeec----C--Ccce
Q 007855 326 VFNSGKCMRT------------YMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ-VIRTFST----G--KIPY 385 (587)
Q Consensus 326 ~~~~~~~~~~------------~~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~----~--~~~~ 385 (587)
- .....+.. -+||...++|.+|+|. ...|++|++||+++|||+...+ .+..|.. + -.+.
T Consensus 243 R-dG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t 321 (641)
T KOG0772|consen 243 R-DGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT 321 (641)
T ss_pred c-CCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce
Confidence 6 33232222 2479999999999995 5689999999999999997653 3333332 2 2344
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc---EEEEEccCCC--CeeEEEEecCCCEEEEEECCCCEEEEECCCCeE
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLG--AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV 460 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~---~~~~~~~h~~--~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 460 (587)
.++|++++ .+|++|+.||.|.+|+..... ....-..|.. .|+||.|+++|++|++-+.|+++++||++..+.
T Consensus 322 sC~~nrdg---~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 322 SCAWNRDG---KLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred eeecCCCc---chhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 66666654 579999999999999986542 2334457877 899999999999999999999999999987643
Q ss_pred EE-E-eecCCCcceeEEEEeCCCCEEEEEEC------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE
Q 007855 461 IK-Y-ISEPHMHSMPSISLHPNTNWLAAQSL------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 461 ~~-~-~~~~~~~~i~~i~~sp~g~~l~~~s~------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
.. . ...+...+.+.++|+|+.++|++|+. .|.+.+||..+...+..+..- ...|..+.|+|.-+.|+
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-----~aSvv~~~WhpkLNQi~ 473 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-----TASVVRCLWHPKLNQIF 473 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC-----CceEEEEeecchhhhee
Confidence 32 2 22345667889999999999999864 478999998776555433322 35567799999999999
Q ss_pred EEcCCCcEEEEe
Q 007855 533 SGDGEGKCWFWD 544 (587)
Q Consensus 533 sgs~dG~I~vwd 544 (587)
+|+.||.++||=
T Consensus 474 ~gsgdG~~~vyY 485 (641)
T KOG0772|consen 474 AGSGDGTAHVYY 485 (641)
T ss_pred eecCCCceEEEE
Confidence 999999999874
No 104
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.8e-25 Score=200.90 Aligned_cols=251 Identities=21% Similarity=0.353 Sum_probs=201.2
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeEEEE
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYW 367 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~vW 367 (587)
-..|...|..+...-- |..|+||+.|++|+|+.+.+++ +++.++.||.++|..++|.. -|.+|++|++||.|.||
T Consensus 7 dt~H~D~IHda~lDyy-gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYY-GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhh-cceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEE
Confidence 3578888888887766 8999999999999999997666 68889999999999999976 89999999999999999
Q ss_pred ECCCCcEEEEe--e-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC---cEEEEEccCCCCeeEEEEecC---C
Q 007855 368 DTETGQVIRTF--S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDN---N 438 (587)
Q Consensus 368 d~~t~~~i~~~--~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp~---~ 438 (587)
.-++++-.+.. . +.....++++.|+. .+.+|+++++||.|.+++.+.. ........|.-.|++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~waphe-ygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHE-YGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccc-cceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 99888533322 2 34566788999976 4578999999999999998765 223445679999999999985 4
Q ss_pred -----------CEEEEEECCCCEEEEECCCCeEE-EEeecCCCcceeEEEEeCCC----CEEEEEECCCeEEEEEcCCce
Q 007855 439 -----------RRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 439 -----------~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~i~~i~~sp~g----~~l~~~s~dg~I~iwd~~~~~ 502 (587)
+.|++|+.|..|+||+.....-+ ......|..-|+.++|.|.- .+|++++.||.|.||..+...
T Consensus 165 ~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~ 244 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY 244 (299)
T ss_pred cccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence 56999999999999999875322 22245799999999999964 579999999999999876332
Q ss_pred eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
.......+.. ....+.++.||..|++|+.++.|..|.+|.-.
T Consensus 245 e~wk~tll~~--f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 245 EPWKKTLLEE--FPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred Cccccccccc--CCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 2222222222 24567889999999999999999999999743
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=4.6e-24 Score=211.91 Aligned_cols=277 Identities=18% Similarity=0.338 Sum_probs=214.9
Q ss_pred ccccceEeecccccccceeeeeCCCCcc-cCCC------cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeE
Q 007855 249 VEDKSTFHGKEEKDYQGRSWVAPPKDAK-AAND------HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKV 321 (587)
Q Consensus 249 ~~~~~~~~~~~~~d~~~r~w~~~~~~~~-~~~~------~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I 321 (587)
+.+...+..++..+..+--|........ .... .-+.|.+.-+ ++|.+.|.+++.+++ +.+|++|+.|..|
T Consensus 150 ls~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~D-gkylatgg~d~~v 226 (479)
T KOG0299|consen 150 LSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSD-GKYLATGGRDRHV 226 (479)
T ss_pred eeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCC-CcEEEecCCCceE
Confidence 4444445556666666666655444322 1111 1455555554 599999999999999 9999999999999
Q ss_pred EEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEE
Q 007855 322 KIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 322 ~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (587)
.||+. .+.+.++.+.+|.+.|.+++|-.....|++++.|++|++|+++....+.++..+.. .+..+.... .+..+.+
T Consensus 227 ~Iw~~-~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd-~v~~IdaL~-reR~vtV 303 (479)
T KOG0299|consen 227 QIWDC-DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQD-GVLGIDALS-RERCVTV 303 (479)
T ss_pred EEecC-cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCcc-ceeeechhc-ccceEEe
Confidence 99999 89999999999999999999999888999999999999999988777766644333 233333332 4467888
Q ss_pred EeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCC-----------c
Q 007855 402 GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-----------H 470 (587)
Q Consensus 402 g~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-----------~ 470 (587)
|+.|+++++|++. .+....+.+|.+.+-|++|.. ...|++||++|.|.+|++...+++.....+|. .
T Consensus 304 GgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~ 381 (479)
T KOG0299|consen 304 GGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNF 381 (479)
T ss_pred ccccceeEEEecc-ccceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccc
Confidence 8899999999994 344456778999999999984 45899999999999999998888766654432 2
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
.|++++..|...++++|+.+|.|++|-+..+.+. +..+......+.|++++|+++|++|++|.
T Consensus 382 Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~--i~~l~~ls~~GfVNsl~f~~sgk~ivagi 444 (479)
T KOG0299|consen 382 WITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRA--INLLYSLSLVGFVNSLAFSNSGKRIVAGI 444 (479)
T ss_pred ceeeeEecccCceEEecCCCCceEEEEecCCccc--cceeeecccccEEEEEEEccCCCEEEEec
Confidence 6889999999999999999999999999877432 22333333578999999999999877764
No 106
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.4e-24 Score=216.07 Aligned_cols=250 Identities=20% Similarity=0.371 Sum_probs=207.7
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 360 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~ 360 (587)
|.+.++..++...--.+.|.||+-+|. |.+|+.|+..|.|++|.+ .+|.++..+..|-..|+|+.|+.||.+|+|||.
T Consensus 66 w~i~k~~~~~q~~v~Pg~v~al~s~n~-G~~l~ag~i~g~lYlWel-ssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgsk 143 (476)
T KOG0646|consen 66 WEILKKDQVVQYIVLPGPVHALASSNL-GYFLLAGTISGNLYLWEL-SSGILLNVLSAHYQSITCLKFSDDGSHIITGSK 143 (476)
T ss_pred cccCchhhhhhhcccccceeeeecCCC-ceEEEeecccCcEEEEEe-ccccHHHHHHhhccceeEEEEeCCCcEEEecCC
Confidence 333333333323334567999999999 999999989999999999 899999999999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC--C
Q 007855 361 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN--N 438 (587)
Q Consensus 361 Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~--~ 438 (587)
||.|.+|.+.. ++....++ +-+....+..|.-+|+.+...+. .
T Consensus 144 Dg~V~vW~l~~---------------------------lv~a~~~~--------~~~p~~~f~~HtlsITDl~ig~Gg~~ 188 (476)
T KOG0646|consen 144 DGAVLVWLLTD---------------------------LVSADNDH--------SVKPLHIFSDHTLSITDLQIGSGGTN 188 (476)
T ss_pred CccEEEEEEEe---------------------------ecccccCC--------CccceeeeccCcceeEEEEecCCCcc
Confidence 99999998632 33333333 34566778889999999988754 4
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce-------------eec
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------------QLN 505 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~-------------~~~ 505 (587)
.+++++|.|.++++||+..+..+..+. ...++.+++++|.+..+++|+.+|.|.+.++.... ...
T Consensus 189 ~rl~TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t 266 (476)
T KOG0646|consen 189 ARLYTASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT 266 (476)
T ss_pred ceEEEecCCceEEEEEeccceeeEEEe--cCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence 689999999999999999999988884 56789999999999999999999999998864322 112
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~ 569 (587)
....+.||.....|+|++++-||.+|++|+.||.|+|||+.+.++++++....++|+.+.+.|.
T Consensus 267 ~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 267 QINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeecc
Confidence 3456778876678999999999999999999999999999999999998877889999999664
No 107
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.93 E-value=3.6e-24 Score=207.94 Aligned_cols=239 Identities=20% Similarity=0.341 Sum_probs=196.1
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc-eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
.|.+.|.++... +.++++|++||.+++||.. |+.+..+..+..+ ..+.+...++....|++++.|.++++|-++.+
T Consensus 103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~ 179 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG 179 (423)
T ss_pred cchhhhhhhccc--CceEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence 488889988887 7799999999999999975 6666666655443 44555554455568999999999999998876
Q ss_pred cE----EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-------------------------CeEEEEeecC
Q 007855 417 EI----TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-------------------------PVVIKYISEP 467 (587)
Q Consensus 417 ~~----~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-------------------------~~~~~~~~~~ 467 (587)
.. +..-.+|...|-++...+++.+|++|+.|.+|.||+... ..++. ...+
T Consensus 180 ~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v-tl~G 258 (423)
T KOG0313|consen 180 ENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV-TLEG 258 (423)
T ss_pred hhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE-Eecc
Confidence 43 233458999999999999999999999999999999321 11222 2357
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
|+.+|.++.|++ ...+++++.|.+|+.||+.++.....+.. ...+.++.++|..++|++|+.|..|++||-++
T Consensus 259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~------~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~ 331 (423)
T KOG0313|consen 259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT------NKSLNCISYSPLSKLLASGSSDRHIRLWDPRT 331 (423)
T ss_pred cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec------CcceeEeecccccceeeecCCCCceeecCCCC
Confidence 999999999998 67899999999999999988765533322 34567899999999999999999999999987
Q ss_pred C---eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 548 C---KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 548 ~---~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+ -....|.+|.+-|.++.|+|.+..+|++++.|+++++||
T Consensus 332 ~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWD 374 (423)
T KOG0313|consen 332 GDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWD 374 (423)
T ss_pred CCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEE
Confidence 5 245678899999999999998888999999999999998
No 108
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.92 E-value=5.8e-24 Score=211.33 Aligned_cols=255 Identities=19% Similarity=0.319 Sum_probs=199.8
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe---------eeEEEcccCCceeeEEEec-CCCeEEEEeCC
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK---------CMRTYMGHSKAVRDISFCN-DGTKFLTASYD 361 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---------~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~D 361 (587)
.-.|.+.|+.+++.|++..++++.+..+.|.|||...... +-.++.+|.+.-.+|+|++ ..-+|++++.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 3469999999999999899999999999999999832221 1226677877777778877 34467777777
Q ss_pred CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-CCCE
Q 007855 362 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-NNRR 440 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~~~~ 440 (587)
++|++||+...... -..-.....+.+|...|..++|++ ....
T Consensus 200 ~~i~lwdi~~~~~~-------------------------------------~~~~~p~~~~~~h~~~VeDV~~h~~h~~l 242 (422)
T KOG0264|consen 200 HTICLWDINAESKE-------------------------------------DKVVDPKTIFSGHEDVVEDVAWHPLHEDL 242 (422)
T ss_pred CcEEEEeccccccC-------------------------------------CccccceEEeecCCcceehhhccccchhh
Confidence 88888877532210 001123445778999999999998 4567
Q ss_pred EEEEECCCCEEEEECCC-CeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 441 FVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
|.++++|+.+.|||+++ ..........|...+.|++|+| ++..||+|+.|++|.+||+++... .+..+.+| ...
T Consensus 243 F~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H--~de 318 (422)
T KOG0264|consen 243 FGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGH--EDE 318 (422)
T ss_pred heeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--CceeccCC--Ccc
Confidence 89999999999999996 2233334456899999999999 567889999999999999997544 46677777 677
Q ss_pred eEEEEEcCCC-CEEEEEcCCCcEEEEeCCC--------------CeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 519 ACQVNFSPDG-RFVMSGDGEGKCWFWDWKS--------------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 519 i~~l~~spdg-~~L~sgs~dG~I~vwd~~t--------------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
|.+|.|||.. ..|++++.|+++.|||+.. .+++..-.||...|..+.|+|.+...|+|++.|+.+
T Consensus 319 v~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 319 VFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred eEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 8999999964 5788999999999999853 134555678999999999999999999999999999
Q ss_pred EEcC
Q 007855 584 KYWD 587 (587)
Q Consensus 584 ~iWD 587 (587)
.||.
T Consensus 399 qIW~ 402 (422)
T KOG0264|consen 399 QIWQ 402 (422)
T ss_pred EEee
Confidence 9994
No 109
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=6.1e-24 Score=218.12 Aligned_cols=278 Identities=19% Similarity=0.361 Sum_probs=215.9
Q ss_pred CCCcEEEEEeCCCeEEEEecCCCC-----eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE--e-
Q 007855 307 KYGHLILSAGMDTKVKIWDVFNSG-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--F- 378 (587)
Q Consensus 307 ~~g~~L~sgs~Dg~I~iWd~~~~~-----~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~--~- 378 (587)
...++|+.+..||.|.|+|..... ..+.....|..+|.++.|.|....|++++.|.++++||+.++.++.. +
T Consensus 62 n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~ 141 (720)
T KOG0321|consen 62 NKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNL 141 (720)
T ss_pred CccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeec
Confidence 347899999999999999983211 12355678999999999999778999999999999999999988765 2
Q ss_pred ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc---------------------------EEEEEccCCCCeeE
Q 007855 379 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---------------------------ITQEYDQHLGAVNT 431 (587)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~---------------------------~~~~~~~h~~~I~~ 431 (587)
.+......++|.+.+ ..+|++|+.||.|.|||++-.. .+.....+...|.+
T Consensus 142 GH~~SvkS~cf~~~n--~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~s 219 (720)
T KOG0321|consen 142 GHTGSVKSECFMPTN--PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFS 219 (720)
T ss_pred ccccccchhhhccCC--CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceee
Confidence 233445567777754 4799999999999999987322 01111234445555
Q ss_pred ---EEEecCCCEEEEEEC-CCCEEEEECCCCeEEEEeec-------CC---CcceeEEEEeCCCCEEEEEECCCeEEEEE
Q 007855 432 ---ITFVDNNRRFVTSSD-DKSLRVWEFGIPVVIKYISE-------PH---MHSMPSISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 432 ---i~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~-------~~---~~~i~~i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
+.+..|...|++++. |+.|+|||++.......... .+ ...+.++.....|.+|++.+.|+.|++|+
T Consensus 220 svTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~yn 299 (720)
T KOG0321|consen 220 SVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYN 299 (720)
T ss_pred eeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEe
Confidence 555667788999888 99999999987654322211 11 34578888888999999999999999999
Q ss_pred cCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-EEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 498 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-FRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~-~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
+.+. .+.....+.++.....-..-..+|++.+|++|+.|...++|.+.+.+. ...+.+|...|++++|.|....-++|
T Consensus 300 m~s~-s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~T 378 (720)
T KOG0321|consen 300 MRSL-SISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVAT 378 (720)
T ss_pred cccc-CcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCcee
Confidence 9764 344556667776666655677899999999999999999999988754 55667899999999999987788999
Q ss_pred EECCCcEEEcC
Q 007855 577 CGWDGLIKYWD 587 (587)
Q Consensus 577 ~g~DG~I~iWD 587 (587)
|+.|-+++||+
T Consensus 379 cSdD~~~kiW~ 389 (720)
T KOG0321|consen 379 CSDDFRVKIWR 389 (720)
T ss_pred eccCcceEEEe
Confidence 99999999996
No 110
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=4.5e-23 Score=219.77 Aligned_cols=263 Identities=17% Similarity=0.320 Sum_probs=211.7
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ 373 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~ 373 (587)
+|+.+-+.|+|.|+ |.+|++|+.||.|++|+.......-.++.-+...|.+++.. +.+|++|+.+++|.+|.+.+++
T Consensus 11 aht~G~t~i~~d~~-gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~ 87 (933)
T KOG1274|consen 11 AHTGGLTLICYDPD-GEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE 87 (933)
T ss_pred hccCceEEEEEcCC-CCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence 69999999999999 88999999999999999843323334444477778887764 5599999999999999998875
Q ss_pred E---EEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCE
Q 007855 374 V---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSL 450 (587)
Q Consensus 374 ~---i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I 450 (587)
. +.+|.. ...++++.-+ +.++++|+.|-.|++.++........+.+|.++|.+|.|+|++++|++.+.||.|
T Consensus 88 ~~~iL~Rftl--p~r~~~v~g~---g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v 162 (933)
T KOG1274|consen 88 EDTILARFTL--PIRDLAVSGS---GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKV 162 (933)
T ss_pred ccceeeeeec--cceEEEEecC---CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceE
Confidence 4 444443 3445666654 3689999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCCCeEEEEeecC-------CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEE
Q 007855 451 RVWEFGIPVVIKYISEP-------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~-------~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 523 (587)
+||++..+.+.+.+... ....+..++|+|++..|++.+.|+.|.+|+..+..... .+........++.++
T Consensus 163 ~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f---~Lr~~~~ss~~~~~~ 239 (933)
T KOG1274|consen 163 QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF---KLRDKLSSSKFSDLQ 239 (933)
T ss_pred EEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceehe---eecccccccceEEEE
Confidence 99999988766555321 23456789999999999999999999999988765543 233333345588899
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCC
Q 007855 524 FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571 (587)
Q Consensus 524 ~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 571 (587)
|||+|.|||+++.+|.|.|||+.+... .-....|++++|.|+.+
T Consensus 240 wsPnG~YiAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 240 WSPNGKYIAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred EcCCCcEEeeeccCCcEEEEecccchh----ccccceeEEEecCCCCC
Confidence 999999999999999999999998222 12235799999999543
No 111
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=2e-24 Score=208.39 Aligned_cols=285 Identities=20% Similarity=0.324 Sum_probs=229.2
Q ss_pred cCCCCCCCCccccccc-eEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 238 KGNAGGEKGEHVEDKS-TFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~-~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
.++..+....+-.+.. ...++++.|.++|.|.... ..++.+|..|.+.|..|++.. ..+++++
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-------------R~~~~~f~AH~G~V~Gi~v~~---~~~~tvg 126 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-------------RECIRTFKAHEGLVRGICVTQ---TSFFTVG 126 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhh-------------hhhhheeecccCceeeEEecc---cceEEec
Confidence 4555555555544443 4558899999999996554 346789999999999999986 5789999
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEccCCCC
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDK 395 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~ 395 (587)
.|.+|+.|.+ .+.+++++.+. ..+..|.-+..+..|+||+. .|.|||.....+++.+..+. ...++.++|...
T Consensus 127 dDKtvK~wk~--~~~p~~tilg~-s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvET- 200 (433)
T KOG0268|consen 127 DDKTVKQWKI--DGPPLHTILGK-SVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVET- 200 (433)
T ss_pred CCcceeeeec--cCCcceeeecc-ccccccccccccccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcc-
Confidence 9999999998 44677777644 45778888888889999985 69999999999999998664 456888888655
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEE
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 475 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i 475 (587)
++|+++.+|+.|.+||++++.+++... -...-+.|+|+|+.-.|++++.|..++.||++...........|.+.|..+
T Consensus 201 -sILas~~sDrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dV 278 (433)
T KOG0268|consen 201 -SILASCASDRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDV 278 (433)
T ss_pred -hheeeeccCCceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEe
Confidence 688899999999999999998877653 345668899999888999999999999999998766666666799999999
Q ss_pred EEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 476 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 476 ~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
.|+|.|+-|++||.|.+|+||..+.+..-.. +... .-..|.++.||.|.+|+++|+.|+.|++|.....+.
T Consensus 279 dfsptG~EfvsgsyDksIRIf~~~~~~SRdi---Yhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 279 DFSPTGQEFVSGSYDKSIRIFPVNHGHSRDI---YHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred ccCCCcchhccccccceEEEeecCCCcchhh---hhHh-hhheeeEEEEeccccEEEecCCCcceeeeecchhhh
Confidence 9999999999999999999999876532211 1111 124577899999999999999999999998765443
No 112
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-23 Score=215.55 Aligned_cols=251 Identities=22% Similarity=0.335 Sum_probs=209.8
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-cCCceeeEEEecCCCeEEEEeCCC
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
...++.....-+...|+++.|+++ |.+|++|..+|.|.|||. ...+.++.+.+ |...|-+++|+ +..+.+|+.|+
T Consensus 205 ~s~~v~~l~~~~~~~vtSv~ws~~-G~~LavG~~~g~v~iwD~-~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~ 280 (484)
T KOG0305|consen 205 SSGSVTELCSFGEELVTSVKWSPD-GSHLAVGTSDGTVQIWDV-KEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDG 280 (484)
T ss_pred CCCceEEeEecCCCceEEEEECCC-CCEEEEeecCCeEEEEeh-hhccccccccCCcCceeEEEecc--CceEEEecCCC
Confidence 334444444445889999999999 999999999999999999 77888888888 99999999998 66899999999
Q ss_pred eEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-CCC
Q 007855 363 NIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-NNR 439 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~~~ 439 (587)
.|..+|++..+.......++ .+..+.|+++. .++++|+.|+.+.|||.....++..+..|..+|..++|+| ...
T Consensus 281 ~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~---~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~ 357 (484)
T KOG0305|consen 281 KILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG---NQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSG 357 (484)
T ss_pred cEEEEEEecchhhhhhhhcccceeeeeEECCCC---CeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccC
Confidence 99999999887665532333 33445555543 6899999999999999998899999999999999999999 455
Q ss_pred EEEEE--ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE--ECCCeEEEEEcCCceeecccceeccccc
Q 007855 440 RFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 440 ~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
.||+| +.|+.|++||..++..+..+ .....|.++.|++..+-|+++ ..++.|.||+..+. .....+.+|
T Consensus 358 lLAsGGGs~D~~i~fwn~~~g~~i~~v--dtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH-- 430 (484)
T KOG0305|consen 358 LLATGGGSADRCIKFWNTNTGARIDSV--DTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGH-- 430 (484)
T ss_pred ceEEcCCCcccEEEEEEcCCCcEeccc--ccCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCC--
Confidence 67776 46999999999999998887 467789999999998777664 56789999998774 344667788
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
...|..+++||||..|++|+.|.+++||++-..
T Consensus 431 ~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 431 TSRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred cceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 456999999999999999999999999998664
No 113
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.92 E-value=4.5e-23 Score=224.07 Aligned_cols=289 Identities=17% Similarity=0.258 Sum_probs=228.3
Q ss_pred ccccceEeeccc--ccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEec
Q 007855 249 VEDKSTFHGKEE--KDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 326 (587)
Q Consensus 249 ~~~~~~~~~~~~--~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 326 (587)
..+.....+++. .|...|.|-..+-....... +..-.+.+.+...|.+.|+|++|+|+ |.+||+||.|+.|.||..
T Consensus 21 v~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~-~~~l~k~l~~m~~h~~sv~CVR~S~d-G~~lAsGSDD~~v~iW~~ 98 (942)
T KOG0973|consen 21 VHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEK-NENLPKHLCTMDDHDGSVNCVRFSPD-GSYLASGSDDRLVMIWER 98 (942)
T ss_pred ecCCceeEecCCccccccceeeccccccchhhhh-hcccchhheeeccccCceeEEEECCC-CCeEeeccCcceEEEeee
Confidence 444555556666 78888899887766433222 12134667788999999999999999 999999999999999997
Q ss_pred CC-----------------CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEE
Q 007855 327 FN-----------------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVK 388 (587)
Q Consensus 327 ~~-----------------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~ 388 (587)
.. ..+++..+.+|...|.+++|+|++.+|++++.|++|.||+..+.+.+..+..+.. +.-+.
T Consensus 99 ~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs 178 (942)
T KOG0973|consen 99 AEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVS 178 (942)
T ss_pred cccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceE
Confidence 41 1146778999999999999999999999999999999999999988888876543 44677
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC------CCeeEEEEecCCCEEEEEEC----CCCEEEEECCCC
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL------GAVNTITFVDNNRRFVTSSD----DKSLRVWEFGIP 458 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~------~~I~~i~~sp~~~~l~s~s~----Dg~I~iwd~~~~ 458 (587)
|.|.+ .+|++-+.|++|++|++.+..+...+..+. .-+..+.|+|+|.+|++.-. -.++.|.+-.+-
T Consensus 179 ~DP~G---ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW 255 (942)
T KOG0973|consen 179 WDPIG---KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW 255 (942)
T ss_pred ECCcc---CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCc
Confidence 77755 589999999999999988776776665543 34678999999999998732 336888887666
Q ss_pred eEEEEeecCCCcceeEEEEeCC-----CC------------EEEEEECCCeEEEEEcCCceeecccceecccccccceEE
Q 007855 459 VVIKYISEPHMHSMPSISLHPN-----TN------------WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp~-----g~------------~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
..-..+. +|..++.++.|+|. .+ .+|+|+.|+.|.||......++.....+ ....|.+
T Consensus 256 k~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l----f~~SI~D 330 (942)
T KOG0973|consen 256 KVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL----FNKSIVD 330 (942)
T ss_pred eeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh----hcCceee
Confidence 6555554 68889999999981 11 6889999999999998665555433333 3456889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 522 VNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 522 l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
++|+|||..|++++.||+|.++.+..
T Consensus 331 msWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 331 MSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred eeEcCCCCeEEEEecCCeEEEEEcch
Confidence 99999999999999999999999864
No 114
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=7e-23 Score=212.18 Aligned_cols=293 Identities=21% Similarity=0.384 Sum_probs=225.9
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCC--cEEEEEeCCCeEEEEecCCCC--------------------eee---------
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYG--HLILSAGMDTKVKIWDVFNSG--------------------KCM--------- 333 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g--~~L~sgs~Dg~I~iWd~~~~~--------------------~~~--------- 333 (587)
.++.+..+.||.+.|.+|+|...++ -+|+|+|.|..||||.+...+ ...
T Consensus 180 ~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ 259 (764)
T KOG1063|consen 180 SFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISF 259 (764)
T ss_pred ceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEeh
Confidence 4567889999999999999988644 478999999999999874322 111
Q ss_pred -EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC--cEEEEeecCCc------ceEEEEccCCCCCcEEEEEeC
Q 007855 334 -RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTGKI------PYVVKLNPDDDKQNILLAGMS 404 (587)
Q Consensus 334 -~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~--~~i~~~~~~~~------~~~~~~~~~~~~~~~l~sg~~ 404 (587)
..+.||.+.|.++.|+|.+..|+++|.|.++.+|...+. --+.....+.. -+...|+++. +.+++-+.
T Consensus 260 eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~---~~ii~~g~ 336 (764)
T KOG1063|consen 260 EALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS---NVIIAHGR 336 (764)
T ss_pred hhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC---CEEEEecc
Confidence 123499999999999999999999999999999977654 33333333222 2345566644 68999999
Q ss_pred CCcEEEEeCCCC---cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECC----------C--------------
Q 007855 405 DKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG----------I-------------- 457 (587)
Q Consensus 405 dg~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~----------~-------------- 457 (587)
.|..++|-.... .....+.+|.+.|..++|.|.|.+|++.|.|.+-|+|--- .
T Consensus 337 ~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~v 416 (764)
T KOG1063|consen 337 TGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFV 416 (764)
T ss_pred cCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehc
Confidence 999999984332 2334467899999999999999999999999888886421 0
Q ss_pred -----------CeEEEEee-------------------------------------------------------------
Q 007855 458 -----------PVVIKYIS------------------------------------------------------------- 465 (587)
Q Consensus 458 -----------~~~~~~~~------------------------------------------------------------- 465 (587)
.+.++.+.
T Consensus 417 n~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~ 496 (764)
T KOG1063|consen 417 NEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAA 496 (764)
T ss_pred cCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccC
Confidence 00001100
Q ss_pred -------------------------cCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceeccccc
Q 007855 466 -------------------------EPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 466 -------------------------~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
.+|...|.+++.+|+++++|+++.. ..|++|+..+-... ..+.+|
T Consensus 497 p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~---~~L~~H-- 571 (764)
T KOG1063|consen 497 PCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQV---QELEGH-- 571 (764)
T ss_pred chhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhh---heeccc--
Confidence 1177789999999999999999865 35899988764433 467777
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe----eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.-.|+.++|||||+||++.+.|.++.+|...... .+..++.|+.-|.++.|+| +..+++|+|.|.+|+||
T Consensus 572 sLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~p-de~~FaTaSRDK~VkVW 645 (764)
T KOG1063|consen 572 SLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSP-DEKYFATASRDKKVKVW 645 (764)
T ss_pred ceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCc-ccceeEEecCCceEEEE
Confidence 5669999999999999999999999999875432 2445788999999999999 66789999999999999
No 115
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.91 E-value=6.1e-24 Score=201.98 Aligned_cols=291 Identities=16% Similarity=0.303 Sum_probs=231.9
Q ss_pred cCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeC
Q 007855 238 KGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 317 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~ 317 (587)
.+...-.+...+.+...++.+++.|.-.-.|.......+.... .+....|.-|..+|.||.|+.+ ..+|++|+.
T Consensus 210 Fg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----YQAqd~fMMmd~aVlci~FSRD-sEMlAsGsq 283 (508)
T KOG0275|consen 210 FGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----YQAQDNFMMMDDAVLCISFSRD-SEMLASGSQ 283 (508)
T ss_pred cccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----hhhhcceeecccceEEEeeccc-HHHhhccCc
Confidence 3443445556678888888888888887777666554332211 1222345568899999999999 899999999
Q ss_pred CCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDK 395 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~ 395 (587)
||.|++|.+ .++.|++.|. .|+..|+|+.|+.|+..+++++.|.+++|.-+.+|++++.|..+.. +.-..|.++
T Consensus 284 DGkIKvWri-~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~d--- 359 (508)
T KOG0275|consen 284 DGKIKVWRI-ETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDD--- 359 (508)
T ss_pred CCcEEEEEE-ecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCC---
Confidence 999999999 8999999987 8999999999999999999999999999999999999999986644 334455543
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEcc--CCCCeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecC--CCc
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEYDQ--HLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEP--HMH 470 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~~~--h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--~~~ 470 (587)
++.++++++||+|++|+..+.+++.+|+. ...+|+++...|. ...+++|...++|+|.++. ++.++.+..+ ..+
T Consensus 360 G~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 360 GHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGG 438 (508)
T ss_pred CCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCC
Confidence 46899999999999999999999988864 4467888888774 4679999999999999986 4455555433 344
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
...+.+++|.|.++.+.+.|+.++.|...++..... +.-| ...+..++-+|..+.|++-+.||.+++|.
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~t---l~Vh--EkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERT---LPVH--EKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeee---eecc--cccccccccCcccchhhhhcccchhhhcC
Confidence 577888999999999999999999999887754322 2223 34456688999999999999999999994
No 116
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=8e-23 Score=193.37 Aligned_cols=238 Identities=20% Similarity=0.307 Sum_probs=187.5
Q ss_pred ccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCC-CcEEEEe--ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 007855 338 GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET-GQVIRTF--STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 413 (587)
Q Consensus 338 ~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~--~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~ 413 (587)
...+.|.+|+||| ...+|+.+|.|++||+|+++. |..+... .....+.+++|+-++ ..+++|+.|+.+++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg---skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG---SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC---ceEEeeccCCceEEEEc
Confidence 4567899999999 556677999999999999987 4544433 334455566666544 57999999999999999
Q ss_pred CCCcEEEEEccCCCCeeEEEEecCCC--EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC
Q 007855 414 NTKEITQEYDQHLGAVNTITFVDNNR--RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 414 ~t~~~~~~~~~h~~~I~~i~~sp~~~--~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg 491 (587)
.+++ +..+..|.++|.++.|.+... .|++||.|++|++||.+...++..+..+ ..+.++.+ -..+++++..++
T Consensus 102 ~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LP--eRvYa~Dv--~~pm~vVata~r 176 (347)
T KOG0647|consen 102 ASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLP--ERVYAADV--LYPMAVVATAER 176 (347)
T ss_pred cCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeecc--ceeeehhc--cCceeEEEecCC
Confidence 9995 455667999999999998766 8999999999999999999988887543 34444433 345788999999
Q ss_pred eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--eeEEEEecCCC---------C
Q 007855 492 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKCHEG---------V 560 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~--~~~~~l~~h~~---------~ 560 (587)
.|.+|++++.... .+..... ..-.+.+|+..++..-.+.|+-+|++.|..+..+ +.-.+|+.|.. .
T Consensus 177 ~i~vynL~n~~te--~k~~~Sp-Lk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYa 253 (347)
T KOG0647|consen 177 HIAVYNLENPPTE--FKRIESP-LKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYA 253 (347)
T ss_pred cEEEEEcCCCcch--hhhhcCc-ccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEE
Confidence 9999999765332 2222222 3456778998898888899999999999999876 55567788873 5
Q ss_pred EEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 561 CIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 561 V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|++|+|+| -...|+|+|.||++.+||
T Consensus 254 VNsi~FhP-~hgtlvTaGsDGtf~FWD 279 (347)
T KOG0647|consen 254 VNSIAFHP-VHGTLVTAGSDGTFSFWD 279 (347)
T ss_pred ecceEeec-ccceEEEecCCceEEEec
Confidence 88999999 556899999999999998
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.9e-22 Score=179.64 Aligned_cols=292 Identities=18% Similarity=0.261 Sum_probs=216.5
Q ss_pred ccccccceEeecccccccceeeeeCCCC-cccCCC-cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEE
Q 007855 247 EHVEDKSTFHGKEEKDYQGRSWVAPPKD-AKAAND-HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 324 (587)
Q Consensus 247 ~~~~~~~~~~~~~~~d~~~r~w~~~~~~-~~~~~~-~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iW 324 (587)
..+.+...+.+-.+.-.+-|..--|.-. .+...+ .-++|.-+...-+.|.+.|.|.+|+|. |.+|++|+.|.+|++.
T Consensus 38 v~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~-geliatgsndk~ik~l 116 (350)
T KOG0641|consen 38 VAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC-GELIATGSNDKTIKVL 116 (350)
T ss_pred EEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc-cCeEEecCCCceEEEE
Confidence 3444555555544444444443222211 111111 223444455666789999999999999 9999999999999998
Q ss_pred ecCCCCee-----eEEEcccCCceeeEEEec----CCCeEEEEeC-CCeEEEEECCCCcEEEEeecCCcceEEEEccCCC
Q 007855 325 DVFNSGKC-----MRTYMGHSKAVRDISFCN----DGTKFLTASY-DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 394 (587)
Q Consensus 325 d~~~~~~~-----~~~~~~h~~~V~~l~fs~----dg~~l~s~s~-Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~ 394 (587)
-. +...+ -..|.-|.+.|++++|.. .+..|++++. |..|.+-|..+|+..+.+..+......-..+++
T Consensus 117 ~f-n~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilalyswn~- 194 (350)
T KOG0641|consen 117 PF-NADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALYSWNG- 194 (350)
T ss_pred ec-ccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEEEecC-
Confidence 76 22222 234667999999999975 3557777654 677888899999998888765444333344433
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-------CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC
Q 007855 395 KQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-------h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 467 (587)
-+|++|+.|.+|++||++-...+..+.. ..+.|.+++..|.|++|++|-.|.+..+||++.+..++.+. +
T Consensus 195 --~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~-p 271 (350)
T KOG0641|consen 195 --AMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH-P 271 (350)
T ss_pred --cEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC-C
Confidence 5899999999999999999888877642 23679999999999999999999999999999999998885 6
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec-ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
|...|.|+.|+|...|+++++.|..|++-|+.....-. .......| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 272 hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 272 HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 99999999999999999999999999999986532111 11122223 4556679999999889999999999999764
No 118
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.91 E-value=1.1e-22 Score=207.49 Aligned_cols=293 Identities=20% Similarity=0.340 Sum_probs=224.7
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC-eEEEEe
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTAS 359 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s 359 (587)
..-+|..+...++||++.|.||...|. |.+|++|+.||+|+||.+ .++.|++++. ..+.|.||+|+|.+. .++.++
T Consensus 385 LrPFPt~~~lvyrGHtg~Vr~iSvdp~-G~wlasGsdDGtvriWEi-~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 385 LRPFPTRCALVYRGHTGLVRSISVDPS-GEWLASGSDDGTVRIWEI-ATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred cCCCcceeeeeEeccCCeEEEEEecCC-cceeeecCCCCcEEEEEe-ecceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 444667788899999999999999998 999999999999999999 8999999886 445899999999654 233333
Q ss_pred CCCeEEEEECCCCc--------------------------------------EEEEeecCCcceEEEEccCCCCCcEEEE
Q 007855 360 YDKNIKYWDTETGQ--------------------------------------VIRTFSTGKIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~--------------------------------------~i~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (587)
....+.|-+..-|. ....+.+...+..+.|+.. +.+|++
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk---GDYlat 538 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK---GDYLAT 538 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC---CceEEE
Confidence 44445555443221 0112223333444555543 346776
Q ss_pred EeCC---CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEe
Q 007855 402 GMSD---KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 478 (587)
Q Consensus 402 g~~d---g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~s 478 (587)
.+.+ ..|.|+++.......-|....+.|.++.|+|...+|++++. ..|+|||+.....++.+.. ....|..+++|
T Consensus 539 V~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g~kwiS~msih 616 (733)
T KOG0650|consen 539 VMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-GSKWISSMSIH 616 (733)
T ss_pred eccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-CCeeeeeeeec
Confidence 6553 57889999877766667667789999999999999998886 6899999988777666643 56679999999
Q ss_pred CCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC------CC---e
Q 007855 479 PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK------SC---K 549 (587)
Q Consensus 479 p~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~------t~---~ 549 (587)
|.|..|++++.|+.++.||+.-.... .+.+..| ...+.+++|++.-.++++|+.||.+.||.-. .. -
T Consensus 617 p~GDnli~gs~d~k~~WfDldlsskP--yk~lr~H--~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliV 692 (733)
T KOG0650|consen 617 PNGDNLILGSYDKKMCWFDLDLSSKP--YKTLRLH--EKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIV 692 (733)
T ss_pred CCCCeEEEecCCCeeEEEEcccCcch--hHHhhhh--hhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceE
Confidence 99999999999999999998754322 3445555 4557789999999999999999999998531 11 3
Q ss_pred eEEEEecCCCC----EEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 550 VFRTLKCHEGV----CIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 550 ~~~~l~~h~~~----V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++..+++|... |..+.||| ..-+|+|+|.||+|++|
T Consensus 693 PlK~L~gH~~~~~~gVLd~~wHP-~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 693 PLKRLRGHEKTNDLGVLDTIWHP-RQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeeeccCceeecccceEeecccC-CCceEEecCCCceEEee
Confidence 46778888765 89999999 67799999999999998
No 119
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=1.6e-22 Score=192.13 Aligned_cols=236 Identities=19% Similarity=0.324 Sum_probs=195.1
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~ 418 (587)
....|.+|.|+|.+..|+++++||++++||+........+........++|.... .+++|+.||.|+.+|+.++..
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~----~~~~G~~dg~vr~~Dln~~~~ 87 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADES----TIVTGGLDGQVRRYDLNTGNE 87 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCc----eEEEeccCceEEEEEecCCcc
Confidence 3578999999999999999999999999999999988999999988888888743 599999999999999999875
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
.+ +..|..+|.||.+++....+++||.|++|++||.+.......+. ....|.++.. .++.|++|+.+..|.+||+
T Consensus 88 ~~-igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d--~~kkVy~~~v--~g~~LvVg~~~r~v~iyDL 162 (323)
T KOG1036|consen 88 DQ-IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD--QGKKVYCMDV--SGNRLVVGTSDRKVLIYDL 162 (323)
T ss_pred ee-eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc--cCceEEEEec--cCCEEEEeecCceEEEEEc
Confidence 44 44699999999999988999999999999999999866555553 3346776665 5778999999999999999
Q ss_pred CCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCC---------CEEEEE
Q 007855 499 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEG---------VCIGCE 565 (587)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~----~~~~~l~~h~~---------~V~~v~ 565 (587)
++....... ......-.+.++++-|++.=.++++-+|+|.+=.+... +....|++|.. +|++++
T Consensus 163 Rn~~~~~q~---reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~ 239 (323)
T KOG1036|consen 163 RNLDEPFQR---RESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIA 239 (323)
T ss_pred ccccchhhh---ccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeE
Confidence 876443311 11222456778999998888899999999988777655 44566777753 799999
Q ss_pred EcCCCCCEEEEEECCCcEEEcC
Q 007855 566 WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 566 ~sp~~~~~l~s~g~DG~I~iWD 587 (587)
||| -...|+|||.||.|.+||
T Consensus 240 Fhp-~~~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 240 FHP-IHGTFATGGSDGIVNIWD 260 (323)
T ss_pred ecc-ccceEEecCCCceEEEcc
Confidence 999 466899999999999998
No 120
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.91 E-value=8.9e-22 Score=207.78 Aligned_cols=286 Identities=17% Similarity=0.311 Sum_probs=231.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
.+.|++|.--+..-+-++.|+..|.+.||++ .+++.+.++.++...|+++.=+|-=..++.|..+|+|.|+++..++.+
T Consensus 159 ~~~Ital~HP~TYLNKIvvGs~~G~lql~Nv-rt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil 237 (910)
T KOG1539|consen 159 GDFITALLHPSTYLNKIVVGSSQGRLQLWNV-RTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL 237 (910)
T ss_pred CCceeeEecchhheeeEEEeecCCcEEEEEe-ccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence 3348888654444567899999999999999 899999999999999999999998789999999999999999999999
Q ss_pred EEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEEEE
Q 007855 376 RTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453 (587)
Q Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iw 453 (587)
.+|... ..+..+.|..++. .++++|+..|.+.+||+...+++..+. .|.+.|..+.|.+....+++++.|.++++|
T Consensus 238 ~sFk~d~g~VtslSFrtDG~--p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~ 315 (910)
T KOG1539|consen 238 MSFKQDWGRVTSLSFRTDGN--PLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVW 315 (910)
T ss_pred EEEEccccceeEEEeccCCC--eeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEE
Confidence 999986 6666777776544 789999999999999999887776654 788888888888888888888888887777
Q ss_pred ECCCC-----------------eEEEEe----------------------------------------------------
Q 007855 454 EFGIP-----------------VVIKYI---------------------------------------------------- 464 (587)
Q Consensus 454 d~~~~-----------------~~~~~~---------------------------------------------------- 464 (587)
=.+++ .+++..
T Consensus 316 vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~ 395 (910)
T KOG1539|consen 316 VFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKL 395 (910)
T ss_pred EeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcC
Confidence 44310 000000
Q ss_pred ------------------------------------------ecCC------CcceeEEEEeCCCCEEEEEECCCeEEEE
Q 007855 465 ------------------------------------------SEPH------MHSMPSISLHPNTNWLAAQSLDNQILIY 496 (587)
Q Consensus 465 ------------------------------------------~~~~------~~~i~~i~~sp~g~~l~~~s~dg~I~iw 496 (587)
...+ ...+++++.++.|++.+.|+..|.|-+|
T Consensus 396 p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~f 475 (910)
T KOG1539|consen 396 PPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRF 475 (910)
T ss_pred CcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEE
Confidence 0001 2457889999999999999999999999
Q ss_pred EcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe---------------------------
Q 007855 497 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--------------------------- 549 (587)
Q Consensus 497 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~--------------------------- 549 (587)
++.++........-..| .+.|+.++...-++.+++++.+|.+.+||.+...
T Consensus 476 NmQSGi~r~sf~~~~ah--~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ 553 (910)
T KOG1539|consen 476 NMQSGIHRKSFGDSPAH--KGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL 553 (910)
T ss_pred EcccCeeecccccCccc--cCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence 99987554333222333 6789999998889999999999999999975432
Q ss_pred --------------eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 550 --------------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 550 --------------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.++.|.+|.+.|++++|+| ++++|++++.|++|++||
T Consensus 554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~-DgrWlisasmD~tIr~wD 604 (910)
T KOG1539|consen 554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP-DGRWLISASMDSTIRTWD 604 (910)
T ss_pred CceeEEEEEchhhhhhHHhhccccceeeeEeCC-CCcEEEEeecCCcEEEEe
Confidence 2344567999999999999 889999999999999998
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=7.9e-21 Score=192.47 Aligned_cols=267 Identities=17% Similarity=0.212 Sum_probs=199.2
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEE-EEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-eCCCeE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNI 364 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg~I 364 (587)
+++.++.+|.. +.+++|+|+ +..+ ++++.++.|++||+ .+++.+..+..+.. +..++|+|+++.++++ +.++.|
T Consensus 22 ~~~~~~~~~~~-~~~l~~~~d-g~~l~~~~~~~~~v~~~d~-~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 22 EVTRTFPVGQR-PRGITLSKD-GKLLYVCASDSDTIQVIDL-ATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred ceEEEEECCCC-CCceEECCC-CCEEEEEECCCCeEEEEEC-CCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 45667776644 678999999 6554 67788999999999 67777776665543 5788999999877654 568999
Q ss_pred EEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC-cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEE
Q 007855 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s 443 (587)
++||+.+++.+..+..+..+..+.+.+++ .+++++..++ .+.+||..+++.+..+.. ...+.++.|++++.+|++
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg---~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 173 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDG---KIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWV 173 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCC---CEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEE
Confidence 99999999888888766666778887755 4677766654 567789998877665432 345678999999998865
Q ss_pred EE-CCCCEEEEECCCCeEEEEeecC------CCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceeccccc
Q 007855 444 SS-DDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 444 ~s-~Dg~I~iwd~~~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
++ .++.|++||+.+...+..+... .......++|+|++++++++ ..++.|.+||+.+....... ..
T Consensus 174 ~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~--~~---- 247 (300)
T TIGR03866 174 SSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL--LV---- 247 (300)
T ss_pred EcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE--Ee----
Confidence 54 5899999999988776655321 11123468899999986554 45678999999876443221 11
Q ss_pred ccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 516 AGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sg-s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
...+.+++|+|+|++|+++ ..+|.|.+||+.+++++..++.. ...++++++|
T Consensus 248 ~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 248 GQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cccceeEeCC
Confidence 2346689999999999886 46899999999999999999865 4458888865
No 122
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=5.8e-23 Score=215.13 Aligned_cols=292 Identities=18% Similarity=0.359 Sum_probs=220.1
Q ss_pred ccCCCce-EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC---eeeEEEcc---cCCceeeEEEec-CCC
Q 007855 282 CYIPKRL-VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG---KCMRTYMG---HSKAVRDISFCN-DGT 353 (587)
Q Consensus 282 ~~~p~~~-i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~---h~~~V~~l~fs~-dg~ 353 (587)
.|+|.+- ...+++| +.+|...++ -..++.++. ..++|+.+.... ++...+.. -.-.+.+|.|+. +.+
T Consensus 27 s~l~~~~~~~~~k~~---~nAIs~nr~-~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N 101 (839)
T KOG0269|consen 27 SYLPYDKMNCKLKAK---ANAISVNRD-INQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN 101 (839)
T ss_pred ccccchheeeecccc---cceEeecCC-cceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh
Confidence 3455442 2234444 455566677 555666654 567888773332 22222211 123466788876 678
Q ss_pred eEEEEeCCCeEEEEECCC---CcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe
Q 007855 354 KFLTASYDKNIKYWDTET---GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 429 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t---~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I 429 (587)
+|++++..|.|.+||+.. .+.+..|.. .....++.|++.. .++|++|+.||.|++||++...-..++.+....|
T Consensus 102 lIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~te--p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESi 179 (839)
T KOG0269|consen 102 LIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTE--PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESI 179 (839)
T ss_pred hheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCC--ccEEEecCCCceEEEEeeecccccccccccchhh
Confidence 999999999999999987 445555543 3455677777754 4899999999999999999999999999999999
Q ss_pred eEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 430 NTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 430 ~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
..+.|+| .+..|+++.+.|.|.+||++.+.........|.++|.|+.|+|++.+||+|+.|+.|+||++.+...- .+.
T Consensus 180 RDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-~~~ 258 (839)
T KOG0269|consen 180 RDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-PKH 258 (839)
T ss_pred hceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-cee
Confidence 9999998 46789999999999999999887665555689999999999999999999999999999998764322 122
Q ss_pred eecccccccceEEEEEcCCCCEE-EEEc--CCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFV-MSGD--GEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L-~sgs--~dG~I~vwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
.. .....+.++.|-|...+. ++++ .|-.|+|||++.. -+..++..|...++.++|-..+...|.+|+.||+|.
T Consensus 259 tI---nTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 259 TI---NTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL 335 (839)
T ss_pred EE---eecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence 21 123567889999987764 4443 4678999999754 567888999999999999887788999999999874
No 123
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.6e-22 Score=198.92 Aligned_cols=260 Identities=17% Similarity=0.266 Sum_probs=202.7
Q ss_pred EeCC-CeEEEEecCCCCeeeEEEcccCC-ceeeEEEecCCCeEEEEeC-CCeEEEEECCCCcEEE-EeecCCcceEEEEc
Q 007855 315 AGMD-TKVKIWDVFNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIR-TFSTGKIPYVVKLN 390 (587)
Q Consensus 315 gs~D-g~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fs~dg~~l~s~s~-Dg~I~vWd~~t~~~i~-~~~~~~~~~~~~~~ 390 (587)
++.| ..+.+||+ .+|....+|++... .-.++..- .+.+++++.. -..|.+|.+....... .+..+....++...
T Consensus 13 sS~d~~~~~~~dl-~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~ 90 (476)
T KOG0646|consen 13 SSFDPINCIVWDL-RTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASS 90 (476)
T ss_pred cCCCCcceeEEec-CCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhhhcccccceeeeecC
Confidence 3344 45999999 78888888876522 11122211 3457777654 4578999987654443 44455556666666
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECC---------CCeEE
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG---------IPVVI 461 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~---------~~~~~ 461 (587)
+. ++++++|+..|.|++|.+.+|.++..+..|-..|+||.|+.|+.+|++||.||.|.+|.+. +..++
T Consensus 91 n~---G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~ 167 (476)
T KOG0646|consen 91 NL---GYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPL 167 (476)
T ss_pred CC---ceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccce
Confidence 54 4678888899999999999999999999999999999999999999999999999999873 23444
Q ss_pred EEeecCCCcceeEEEEeCC--CCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCc
Q 007855 462 KYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 539 (587)
Q Consensus 462 ~~~~~~~~~~i~~i~~sp~--g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~ 539 (587)
..+. .|.-+|+.+.+.+. ..+|+++|.|.++++||+..+..+.... ....+.+++++|-++.+++|+.+|.
T Consensus 168 ~~f~-~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~------fp~si~av~lDpae~~~yiGt~~G~ 240 (476)
T KOG0646|consen 168 HIFS-DHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT------FPSSIKAVALDPAERVVYIGTEEGK 240 (476)
T ss_pred eeec-cCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe------cCCcceeEEEcccccEEEecCCcce
Confidence 4444 58889999988775 4689999999999999998875553222 2456778999999999999999999
Q ss_pred EEEEeCCC----------------CeeEEEEecCCC--CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 540 CWFWDWKS----------------CKVFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 540 I~vwd~~t----------------~~~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.+.++.. +..+..+.+|.+ .|+|++.+- ++.+|++|+.||.|+|||
T Consensus 241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~-DgtlLlSGd~dg~VcvWd 305 (476)
T KOG0646|consen 241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIST-DGTLLLSGDEDGKVCVWD 305 (476)
T ss_pred EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEec-CccEEEeeCCCCCEEEEe
Confidence 99988743 234566788988 999999999 888999999999999998
No 124
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.90 E-value=2.1e-22 Score=190.76 Aligned_cols=299 Identities=16% Similarity=0.254 Sum_probs=226.6
Q ss_pred CCCCCCCccccccceEeecccccccceeeeeCCCCcccCC----C-cccCCCceEEEEcCCCCCeEEEEEccCCCcEEEE
Q 007855 240 NAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAAN----D-HCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILS 314 (587)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~----~-~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~s 314 (587)
+...-........+.|.++++.|..++..-.+.-..+... . .....-.++++|-.|...|++|.|+|. ..+|++
T Consensus 111 HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPr-e~ILiS 189 (430)
T KOG0640|consen 111 HKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPR-ETILIS 189 (430)
T ss_pred cccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecch-hheEEe
Confidence 3334445567788889999999999998765533322211 0 111123578999999999999999999 999999
Q ss_pred EeCCCeEEEEecCCCC-eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC----CcceEEEE
Q 007855 315 AGMDTKVKIWDVFNSG-KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG----KIPYVVKL 389 (587)
Q Consensus 315 gs~Dg~I~iWd~~~~~-~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~----~~~~~~~~ 389 (587)
|+.|++|++||+.++. +..........+|++|.|+|.|.+|+.|....++++||+.+.++...-... ..+.++..
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y 269 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY 269 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEe
Confidence 9999999999994322 111112235578999999999999999999999999999999887655422 22334444
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc-cCC-CCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC
Q 007855 390 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHL-GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~-~h~-~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 467 (587)
++ .+++.++|+.||.|++||--+++++.++. .|. ..|.+..|..+++++++.+.|..|++|.+.++++++.....
T Consensus 270 s~---t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGA 346 (430)
T KOG0640|consen 270 SS---TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGA 346 (430)
T ss_pred cC---CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecC
Confidence 44 45799999999999999999999888774 354 56899999999999999999999999999999998887543
Q ss_pred CC----cceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 468 HM----HSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 468 ~~----~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
.. .--+...|+....|++.-. ..+.+.-||.++..+.... ..+| .+.+..+.-||.+.-+++++.|-++++
T Consensus 347 g~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~--slgH--n~a~R~i~HSP~~p~FmTcsdD~raRF 422 (430)
T KOG0640|consen 347 GTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALL--SLGH--NGAVRWIVHSPVEPAFMTCSDDFRARF 422 (430)
T ss_pred CcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhc--ccCC--CCCceEEEeCCCCCceeeecccceeee
Confidence 11 1124455666777776654 3478999999987655332 3355 567788999999999999999999999
Q ss_pred EeCC
Q 007855 543 WDWK 546 (587)
Q Consensus 543 wd~~ 546 (587)
|--+
T Consensus 423 Wyrr 426 (430)
T KOG0640|consen 423 WYRR 426 (430)
T ss_pred eeec
Confidence 9643
No 125
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=6.3e-21 Score=180.99 Aligned_cols=254 Identities=20% Similarity=0.386 Sum_probs=192.4
Q ss_pred cCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-CC--eeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeEEEE
Q 007855 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYW 367 (587)
Q Consensus 293 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~--~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~vW 367 (587)
.+|.+-|.|+.|.+. |+.+|+|+.|++|+|||... ++ .+....+.|.+.|..|.|.+ -|+.+++|++|+++.||
T Consensus 10 s~h~DlihdVs~D~~-GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFY-GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred cCCcceeeeeeeccc-CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 479999999999999 99999999999999999622 22 55667789999999999976 68999999999999999
Q ss_pred ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec--CCCEEEEEE
Q 007855 368 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD--NNRRFVTSS 445 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp--~~~~l~s~s 445 (587)
.-.. ..+..+. +-| .....+....+.|+.|.|.| -|-.+++++
T Consensus 89 EE~~----~~~~~~~--------------------------~~W-----v~~ttl~DsrssV~DV~FaP~hlGLklA~~~ 133 (361)
T KOG2445|consen 89 EEQE----KSEEAHG--------------------------RRW-----VRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS 133 (361)
T ss_pred eecc----ccccccc--------------------------cee-----EEEEEeecCCcceeEEEecchhcceEEEEec
Confidence 7431 1111110 011 12233445667899999988 466799999
Q ss_pred CCCCEEEEECCCCeEEEEee------------cCCCcceeEEEEeCC---CCEEEEEECC-----CeEEEEEcCCce-ee
Q 007855 446 DDKSLRVWEFGIPVVIKYIS------------EPHMHSMPSISLHPN---TNWLAAQSLD-----NQILIYSTRERF-QL 504 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~------------~~~~~~i~~i~~sp~---g~~l~~~s~d-----g~I~iwd~~~~~-~~ 504 (587)
.||.||||+.-....+.... ..+..+..|+.|+|. ..+|++|+.+ +.+.||...... ..
T Consensus 134 aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw 213 (361)
T KOG2445|consen 134 ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKW 213 (361)
T ss_pred cCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCccee
Confidence 99999999975543332221 113445678889874 4688888876 578899765433 55
Q ss_pred cccceecccccccceEEEEEcCC----CCEEEEEcCCCcEEEEeCCC--------------------CeeEEEEecCCCC
Q 007855 505 NKKKRFAGHIVAGYACQVNFSPD----GRFVMSGDGEGKCWFWDWKS--------------------CKVFRTLKCHEGV 560 (587)
Q Consensus 505 ~~~~~~~~~~~~~~i~~l~~spd----g~~L~sgs~dG~I~vwd~~t--------------------~~~~~~l~~h~~~ 560 (587)
.....+.+| ...|.+++|.|+ -..||+++.|| |+||.++. -+.+..+..|.+.
T Consensus 214 ~kva~L~d~--~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~ 290 (361)
T KOG2445|consen 214 LKVAELPDH--TDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGE 290 (361)
T ss_pred eeehhcCCC--CCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCc
Confidence 555666666 678999999995 34789999999 99999863 1345667789999
Q ss_pred EEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 561 CIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 561 V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
|..+.|+- .+..|++.|.||+||+|
T Consensus 291 VWrv~wNm-tGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 291 VWRVRWNM-TGTILSSTGDDGCVRLW 315 (361)
T ss_pred eEEEEEee-eeeEEeecCCCceeeeh
Confidence 99999998 78899999999999999
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=7.7e-23 Score=214.25 Aligned_cols=245 Identities=17% Similarity=0.332 Sum_probs=198.2
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCC--CCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFN--SGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~--~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
.+..|.|.....++||+++..|.|.+||+.. ..+.+..|..|...|+++.|++ ...+|++||.||+|++||++..+.
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 4667888876788999999999999999944 2566778899999999999998 567899999999999999998887
Q ss_pred EEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEE
Q 007855 375 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 375 i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
..++.. ...+.-+.|+|.. ++.|+++...|.+.+||++.. ++...+..|.++|.|+.|+|++.+|++|+.|+.|+|
T Consensus 169 ~~t~~~nSESiRDV~fsp~~--~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vki 246 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGY--GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKI 246 (839)
T ss_pred cccccccchhhhceeeccCC--CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEE
Confidence 776654 4556788898865 478999999999999999975 566778899999999999999999999999999999
Q ss_pred EECCCCeEEEEeecCCCcceeEEEEeCCCC-EEEEEE--CCCeEEEEEcCCceeecccceecccccccceEEEEEcC-CC
Q 007855 453 WEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DG 528 (587)
Q Consensus 453 wd~~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg 528 (587)
||+...............++.++.|-|... .|++++ .|-.|+|||++.... +...+..| ...++.++|.. |-
T Consensus 247 Wd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYI--P~~t~~eH--~~~vt~i~W~~~d~ 322 (839)
T KOG0269|consen 247 WDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYI--PYATFLEH--TDSVTGIAWDSGDR 322 (839)
T ss_pred EeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccc--cceeeecc--CccccceeccCCCc
Confidence 999866544333335677899999999765 466665 367899999986543 34556666 45677788855 45
Q ss_pred CEEEEEcCCCcEEEEeCCCC
Q 007855 529 RFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 529 ~~L~sgs~dG~I~vwd~~t~ 548 (587)
..|.+++.||.|..-.++++
T Consensus 323 ~~l~s~sKD~tv~qh~~kna 342 (839)
T KOG0269|consen 323 INLWSCSKDGTVLQHLFKNA 342 (839)
T ss_pred eeeEeecCccHHHHhhhhcc
Confidence 67889999998876655544
No 127
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.88 E-value=2.1e-21 Score=193.21 Aligned_cols=213 Identities=23% Similarity=0.404 Sum_probs=176.1
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe------eeEEEcccCCceeeEEEec-CCCeEEEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK------CMRTYMGHSKAVRDISFCN-DGTKFLTA 358 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~------~~~~~~~h~~~V~~l~fs~-dg~~l~s~ 358 (587)
.++-.+|.||.+.=++|+|++...-.|++|+.|++|++||+..... +...+.+|...|.+++|++ +..+|+++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv 246 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSV 246 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheee
Confidence 3455688999998899999998788999999999999999943332 4567889999999999999 66789999
Q ss_pred eCCCeEEEEECCC--CcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEE
Q 007855 359 SYDKNIKYWDTET--GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITF 434 (587)
Q Consensus 359 s~Dg~I~vWd~~t--~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~ 434 (587)
+.|+.+.|||+++ .++...... .....|++|.|.+ ..+|++|+.|++|.+||+|+. +.+..+.+|...|.++.|
T Consensus 247 ~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~--~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~W 324 (422)
T KOG0264|consen 247 GDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFN--EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEW 324 (422)
T ss_pred cCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCC--CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEe
Confidence 9999999999995 344343333 4566789999876 489999999999999999976 567889999999999999
Q ss_pred ecCC-CEEEEEECCCCEEEEECCCC-------------eEEEEeecCCCcceeEEEEeCCCCE-EEEEECCCeEEEEEcC
Q 007855 435 VDNN-RRFVTSSDDKSLRVWEFGIP-------------VVIKYISEPHMHSMPSISLHPNTNW-LAAQSLDNQILIYSTR 499 (587)
Q Consensus 435 sp~~-~~l~s~s~Dg~I~iwd~~~~-------------~~~~~~~~~~~~~i~~i~~sp~g~~-l~~~s~dg~I~iwd~~ 499 (587)
+|.. ..|++++.|+.+.|||+..- ..+..+..+|...|..+.|+|+..+ |++.+.|+.+.||.+.
T Consensus 325 SPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 325 SPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 9965 56888999999999998541 2233556689999999999998765 5667889999999876
Q ss_pred C
Q 007855 500 E 500 (587)
Q Consensus 500 ~ 500 (587)
.
T Consensus 405 ~ 405 (422)
T KOG0264|consen 405 E 405 (422)
T ss_pred c
Confidence 3
No 128
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=4.5e-20 Score=185.14 Aligned_cols=276 Identities=16% Similarity=0.303 Sum_probs=213.8
Q ss_pred EEcCCC-CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 291 TWSGHT-KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 291 tl~gH~-~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
.|.++. +-|.|++|.++ |+ +++|..+|.|.||+. ...+..+....|.+.|.+++...+|. |++|+.|+.|..||
T Consensus 240 ~fek~ekk~Vl~v~F~en-gd-viTgDS~G~i~Iw~~-~~~~~~k~~~aH~ggv~~L~~lr~Gt-llSGgKDRki~~Wd- 314 (626)
T KOG2106|consen 240 IFEKREKKFVLCVTFLEN-GD-VITGDSGGNILIWSK-GTNRISKQVHAHDGGVFSLCMLRDGT-LLSGGKDRKIILWD- 314 (626)
T ss_pred ccccccceEEEEEEEcCC-CC-EEeecCCceEEEEeC-CCceEEeEeeecCCceEEEEEecCcc-EeecCccceEEecc-
Confidence 344443 57999999998 54 779999999999998 66666666669999999999999997 55599999999999
Q ss_pred CCCcEEEEeecCCcce-EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC
Q 007855 370 ETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK 448 (587)
Q Consensus 370 ~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg 448 (587)
..-+.++....+.... +-.+.+... . |++|...+.|..=.+..+-.+.. .+|......++.+|+.+.|++++.|+
T Consensus 315 ~~y~k~r~~elPe~~G~iRtv~e~~~--d-i~vGTtrN~iL~Gt~~~~f~~~v-~gh~delwgla~hps~~q~~T~gqdk 390 (626)
T KOG2106|consen 315 DNYRKLRETELPEQFGPIRTVAEGKG--D-ILVGTTRNFILQGTLENGFTLTV-QGHGDELWGLATHPSKNQLLTCGQDK 390 (626)
T ss_pred ccccccccccCchhcCCeeEEecCCC--c-EEEeeccceEEEeeecCCceEEE-EecccceeeEEcCCChhheeeccCcc
Confidence 4445555554443322 222333222 1 88888888888877777654443 47889999999999999999999999
Q ss_pred CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 449 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 449 ~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
.+++|+ ..+++... ....+..|+.|+|.| .+++|+..|...+.|..+...+... .....+..+.|+|+|
T Consensus 391 ~v~lW~--~~k~~wt~--~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~------~d~~~ls~v~ysp~G 459 (626)
T KOG2106|consen 391 HVRLWN--DHKLEWTK--IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIH------TDNEQLSVVRYSPDG 459 (626)
T ss_pred eEEEcc--CCceeEEE--EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEE------ecCCceEEEEEcCCC
Confidence 999999 33333222 245678999999999 9999999999999999875443222 224678889999999
Q ss_pred CEEEEEcCCCcEEEEeCCC-CeeEEEE-ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 529 RFVMSGDGEGKCWFWDWKS-CKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 529 ~~L~sgs~dG~I~vwd~~t-~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+||.|+.|+.|+||-+.. +..+... +.|..+|+.+.|++ ++++|.+-+-|-.|..|.
T Consensus 460 ~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~-Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 460 AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSS-DSQFLVSNSGDYEILYWK 519 (626)
T ss_pred CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecC-CCceEEeccCceEEEEEc
Confidence 9999999999999999864 4444444 34558999999999 788999999999999983
No 129
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.88 E-value=7.2e-20 Score=183.64 Aligned_cols=289 Identities=16% Similarity=0.290 Sum_probs=219.7
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCC-CcEEEEE--eCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEE
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKY-GHLILSA--GMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLT 357 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~-g~~L~sg--s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s 357 (587)
|.-+...-++.+..-..+|+|++|++.+ |.+|+.- +.+..+.+||. ..+............|....|+|.+..|+.
T Consensus 139 Wdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdW-qk~~~~~~vk~sne~v~~a~FHPtd~nlii 217 (626)
T KOG2106|consen 139 WDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDW-QKKAKLGPVKTSNEVVFLATFHPTDPNLII 217 (626)
T ss_pred cccccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhc-hhhhccCcceeccceEEEEEeccCCCcEEE
Confidence 3344445566777788899999999854 4555443 55677899999 555555555666788999999995555554
Q ss_pred EeCCCeEEEEECCCCcEEEEe---ecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEE
Q 007855 358 ASYDKNIKYWDTETGQVIRTF---STG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTI 432 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~---~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i 432 (587)
....+.+.+|+.+.+...++. ... ..+.|++|.++++ +++|.++|.|.||+..+.+..+....|.+.|.++
T Consensus 218 t~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd----viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L 293 (626)
T KOG2106|consen 218 TCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD----VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSL 293 (626)
T ss_pred EeCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC----EEeecCCceEEEEeCCCceEEeEeeecCCceEEE
Confidence 445699999999998766543 322 4456777887776 9999999999999999988887777999999999
Q ss_pred EEecCCCEEEEEECCCCEEEEECCCCe-----------EEEEe----------------------------ecCCCccee
Q 007855 433 TFVDNNRRFVTSSDDKSLRVWEFGIPV-----------VIKYI----------------------------SEPHMHSMP 473 (587)
Q Consensus 433 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~-----------~~~~~----------------------------~~~~~~~i~ 473 (587)
+...+|. |++|+.|+.|..||-.-.+ .++.+ ...|.....
T Consensus 294 ~~lr~Gt-llSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw 372 (626)
T KOG2106|consen 294 CMLRDGT-LLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELW 372 (626)
T ss_pred EEecCcc-EeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccccee
Confidence 9999886 5559999999999931100 01111 123566778
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q 007855 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 553 (587)
Q Consensus 474 ~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~ 553 (587)
.++.+|+...+++++.|+.+++|+ .. +..- .+. ....+.++.|+|.| .|+.|+..|...+.|..+..++..
T Consensus 373 gla~hps~~q~~T~gqdk~v~lW~-~~-k~~w-t~~-----~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~ 443 (626)
T KOG2106|consen 373 GLATHPSKNQLLTCGQDKHVRLWN-DH-KLEW-TKI-----IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTI 443 (626)
T ss_pred eEEcCCChhheeeccCcceEEEcc-CC-ceeE-EEE-----ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence 899999999999999999999998 22 2221 111 13456679999999 999999999999999999665554
Q ss_pred EecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 554 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 554 l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
-.. ..+++++.|+| ++.+||.|+.|+.|.||
T Consensus 444 ~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 444 HTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIY 474 (626)
T ss_pred Eec-CCceEEEEEcC-CCCEEEEecCCCeEEEE
Confidence 444 78999999999 78899999999999987
No 130
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=4.9e-20 Score=191.06 Aligned_cols=276 Identities=13% Similarity=0.212 Sum_probs=222.4
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
..+|+||+|+.+ .+.||.+-.+|.|.||++....-+...+.++ ...|.+++|+ ++..|++.+.+|.|.-||+.+++.
T Consensus 25 Ps~I~slA~s~k-S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk~ 102 (691)
T KOG2048|consen 25 PSEIVSLAYSHK-SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLKQ 102 (691)
T ss_pred ccceEEEEEecc-CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCce
Confidence 457999999999 7789999999999999996666666667665 4679999999 566788999999999999999998
Q ss_pred EEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE--EEccCCCCeeEEEEecCCCEEEEEECCCCEE
Q 007855 375 IRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 451 (587)
Q Consensus 375 i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~--~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~ 451 (587)
+..+. .+..++.++.+|.. ..+++|+.||.+..++...+.+.. .+....+.|.++.|+|++..+++|+.||.|+
T Consensus 103 ~~~~d~~gg~IWsiai~p~~---~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Ir 179 (691)
T KOG2048|consen 103 KYNIDSNGGAIWSIAINPEN---TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIR 179 (691)
T ss_pred eEEecCCCcceeEEEeCCcc---ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEE
Confidence 88876 45677889998876 469999999988888888876554 3555678999999999999999999999999
Q ss_pred EEECCCCeEEEEeec-------CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEE
Q 007855 452 VWEFGIPVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 452 iwd~~~~~~~~~~~~-------~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
+||...+..+..+.. ....-|.++.+-.+ ..|++|...|.|.+||...+..+...... ...|.+++.
T Consensus 180 iwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h-----~adVl~Lav 253 (691)
T KOG2048|consen 180 IWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCH-----DADVLALAV 253 (691)
T ss_pred EEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhh-----hcceeEEEE
Confidence 999998877662221 12233666666644 47999999999999999888766544443 345777999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCee----EEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 525 SPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.+++.+|++++.|+.|..+...+.+. ......|...|.+++..+ . .|++||.|+.+.+
T Consensus 254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~-~--~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE-N--ALISGGRDFTLAI 315 (691)
T ss_pred cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec-c--eEEecceeeEEEE
Confidence 99999999999999999998876543 233356888899999987 2 8999999998765
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=6.3e-20 Score=190.24 Aligned_cols=314 Identities=14% Similarity=0.212 Sum_probs=230.4
Q ss_pred CCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee--EEEcccCCceeeEEE
Q 007855 271 PPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM--RTYMGHSKAVRDISF 348 (587)
Q Consensus 271 ~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~f 348 (587)
..+....+.+|.....+....+....+.|.+++.+|. +..++.|+.||.+..++. ..++.. +.+.-..+.|.+++|
T Consensus 85 S~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~-~~~l~IgcddGvl~~~s~-~p~~I~~~r~l~rq~sRvLslsw 162 (691)
T KOG2048|consen 85 SSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPE-NTILAIGCDDGVLYDFSI-GPDKITYKRSLMRQKSRVLSLSW 162 (691)
T ss_pred eecCCceEEEEecccCceeEEecCCCcceeEEEeCCc-cceEEeecCCceEEEEec-CCceEEEEeecccccceEEEEEe
Confidence 3334455667788888888899999999999999999 889999999998888887 444333 345556789999999
Q ss_pred ecCCCeEEEEeCCCeEEEEECCCCcEEEEee-----cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc
Q 007855 349 CNDGTKFLTASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 423 (587)
Q Consensus 349 s~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~ 423 (587)
++++..|++|+.||.|++||..++..+.... ......++.|+-..-....|++|.+.|.|.+||...+.+++.+.
T Consensus 163 ~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gTLiqS~~ 242 (691)
T KOG2048|consen 163 NPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGTLIQSHS 242 (691)
T ss_pred cCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcchhhhhh
Confidence 9999999999999999999999998877332 22212222222211123569999999999999999999999999
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE-----------------EEE-----------------------
Q 007855 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV-----------------IKY----------------------- 463 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-----------------~~~----------------------- 463 (587)
.|...|.|++..+++.++++++.|+.|..|...+... +..
T Consensus 243 ~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~ 322 (691)
T KOG2048|consen 243 CHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFK 322 (691)
T ss_pred hhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccC
Confidence 9999999999999999999999999887776432200 000
Q ss_pred ------------------------------------------------------eecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 464 ------------------------------------------------------ISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 464 ------------------------------------------------------~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
+.......|.+.+++|+|++++.++-
T Consensus 323 ~~~h~~~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~ 402 (691)
T KOG2048|consen 323 NMDHRQKNLFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV 402 (691)
T ss_pred chhhhccccccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec
Confidence 00002334788899999999988762
Q ss_pred CCeEEEEEcCCc-------------------------------------eee----------cccceecccccccceEEE
Q 007855 490 DNQILIYSTRER-------------------------------------FQL----------NKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 490 dg~I~iwd~~~~-------------------------------------~~~----------~~~~~~~~~~~~~~i~~l 522 (587)
. .++||.+... ..+ .....+........|+.+
T Consensus 403 ~-~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l 481 (691)
T KOG2048|consen 403 S-RTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRL 481 (691)
T ss_pred c-ceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeE
Confidence 1 2233322210 000 000111112235678999
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 523 NFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..||+|+||++.+..|.|.+|++++.+.-.........|+.++++|.....|+.+..++.|.-||
T Consensus 482 ~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efd 546 (691)
T KOG2048|consen 482 VVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFD 546 (691)
T ss_pred EEcCCCCEEEEEeccceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEe
Confidence 99999999999999999999999998765555445578999999987888898889999887664
No 132
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.88 E-value=5.1e-21 Score=198.60 Aligned_cols=260 Identities=20% Similarity=0.390 Sum_probs=203.9
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEE-EEEccCCCcEEEEEeCCCeEEEEecCCCCeee
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSA-IRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM 333 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~-l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~ 333 (587)
..++.++|...|.|-.-... + -..+.+.+|.+-|.+ +++.+..+-.|++|++|.+|.+|.+ ....++
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~--------~---l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~-~~~~P~ 94 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQ--------Y---LETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL-SQAEPL 94 (745)
T ss_pred EEeecCCCCceeeeeccCcc--------c---ccceecccCcceeeccceeccccCcceEeecccceEEEEec-CCCCch
Confidence 45677778778877543321 1 123567889998888 9998754667999999999999999 788999
Q ss_pred EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 007855 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 412 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD 412 (587)
.++.+|...|.|++...++. ++|||.|.++++|-. +++...+..+ ..++.+...+.. .+++|+.|..|++|.
T Consensus 95 ~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~----~~vTgsaDKtIklWk 167 (745)
T KOG0301|consen 95 YTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN----TYVTGSADKTIKLWK 167 (745)
T ss_pred hhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC----cEEeccCcceeeecc
Confidence 99999999999999888887 999999999999975 4444444433 334455555543 699999999999997
Q ss_pred CCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCe
Q 007855 413 MNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ 492 (587)
Q Consensus 413 ~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~ 492 (587)
- ++.+++|.+|.+.|+.+++.+++ .|++++.||.|++|++......... +|..-|.+++...++..+++++.|++
T Consensus 168 ~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~--ghtn~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 168 G--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMH--GHTNFVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred C--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeee--ccceEEEEEEecCCCCeEEEecCCce
Confidence 5 78889999999999999999765 6999999999999999544444433 68999999998888999999999999
Q ss_pred EEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 493 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 493 I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
++||+... +...+ .++ ...+.++++-++|. |++|++||.|+||...
T Consensus 243 lriW~~~e--~~q~I-~lP----ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~ 288 (745)
T KOG0301|consen 243 LRIWKKDE--CVQVI-TLP----TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD 288 (745)
T ss_pred EEEeecCc--eEEEE-ecC----ccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence 99998762 22211 111 23566777777775 5678899999999764
No 133
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.87 E-value=4.6e-21 Score=176.55 Aligned_cols=246 Identities=18% Similarity=0.283 Sum_probs=194.9
Q ss_pred EcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc---EEEEeecCCcc-eEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 336 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 336 ~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
-..|.+.|.++...--|++|++|+.|++|+|+.++.+. ++..+..+..+ .-+.|.. +..+.+|++++.||+|.||
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wah-Pk~G~iLAScsYDgkVIiW 85 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAH-PKFGTILASCSYDGKVIIW 85 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecc-cccCcEeeEeecCceEEEE
Confidence 34689999998888889999999999999999998654 45566655444 3444433 3456899999999999999
Q ss_pred eCCCCcE--EEEEccCCCCeeEEEEecC--CCEEEEEECCCCEEEEECCCC--eEEEEeecCCCcceeEEEEeCC---C-
Q 007855 412 DMNTKEI--TQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN---T- 481 (587)
Q Consensus 412 D~~t~~~--~~~~~~h~~~I~~i~~sp~--~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~i~~i~~sp~---g- 481 (587)
.-.+++- ...+..|...|++++|-|. |-.|++++.||.|.|.+++.. -....+...|...+++++|.|. |
T Consensus 86 ke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~ 165 (299)
T KOG1332|consen 86 KEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGS 165 (299)
T ss_pred ecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcc
Confidence 9988743 4456679999999999885 567999999999999998764 3445556678999999999995 4
Q ss_pred ----------CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC----CEEEEEcCCCcEEEEeCCC
Q 007855 482 ----------NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 482 ----------~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg----~~L~sgs~dG~I~vwd~~t 547 (587)
+.|++|+.|+.|+||+..+. .......+.+| ..++..++|.|.- .+|++++.||+|.||-...
T Consensus 166 ~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H--~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~ 242 (299)
T KOG1332|consen 166 LVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGH--KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDE 242 (299)
T ss_pred ccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhc--chhhhhhhhccccCCCceeeEEecCCCcEEEEEecC
Confidence 56999999999999998775 33334457778 6889999999964 5799999999999998652
Q ss_pred C--e-eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 548 C--K-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 548 ~--~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
- . ....+......+..+.|+. .+++|+.++.|..|.+|
T Consensus 243 e~e~wk~tll~~f~~~~w~vSWS~-sGn~LaVs~GdNkvtlw 283 (299)
T KOG1332|consen 243 EYEPWKKTLLEEFPDVVWRVSWSL-SGNILAVSGGDNKVTLW 283 (299)
T ss_pred ccCcccccccccCCcceEEEEEec-cccEEEEecCCcEEEEE
Confidence 1 1 1122333456899999999 78899999999999998
No 134
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.1e-20 Score=199.59 Aligned_cols=243 Identities=16% Similarity=0.302 Sum_probs=200.7
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC-cEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 415 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~-~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t 415 (587)
.|....+.|+|.++|.+|++|+.||.|++|+.... .....+. .+..+.+++... +.|++|+.++.|.+|.+.+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s-----~~f~~~s~~~tv~~y~fps 85 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS-----NHFLTGSEQNTVLRYKFPS 85 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc-----cceEEeeccceEEEeeCCC
Confidence 68888999999999999999999999999987665 3223333 344444444332 4799999999999999998
Q ss_pred CcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEE
Q 007855 416 KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495 (587)
Q Consensus 416 ~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~i 495 (587)
++.-..+....-++++++|+-+|++++.||+|-.|++.++......+.+. +|..+|.++.++|++++||+.+.||.|++
T Consensus 86 ~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p~~~fLAvss~dG~v~i 164 (933)
T KOG1274|consen 86 GEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDPKGNFLAVSSCDGKVQI 164 (933)
T ss_pred CCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeec-ccCCceeeeeEcCCCCEEEEEecCceEEE
Confidence 87665666677899999999999999999999999999998877776664 69999999999999999999999999999
Q ss_pred EEcCCceeecccceec---ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcCCC
Q 007855 496 YSTRERFQLNKKKRFA---GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLE 570 (587)
Q Consensus 496 wd~~~~~~~~~~~~~~---~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp~~ 570 (587)
|++.++.....+.... .......++.++|+|+|..++....++.|.+|+..++.....+.. |...++.+.|+| .
T Consensus 165 w~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP-n 243 (933)
T KOG1274|consen 165 WDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP-N 243 (933)
T ss_pred EEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC-C
Confidence 9998875543332221 122245677899999988888888999999999999988887754 455699999999 7
Q ss_pred CCEEEEEECCCcEEEcC
Q 007855 571 QSKVATCGWDGLIKYWD 587 (587)
Q Consensus 571 ~~~l~s~g~DG~I~iWD 587 (587)
+.+||+++.||.|.|||
T Consensus 244 G~YiAAs~~~g~I~vWn 260 (933)
T KOG1274|consen 244 GKYIAASTLDGQILVWN 260 (933)
T ss_pred CcEEeeeccCCcEEEEe
Confidence 89999999999999997
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.87 E-value=2.3e-20 Score=193.59 Aligned_cols=293 Identities=18% Similarity=0.307 Sum_probs=216.5
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCc---EEEEEeCCCeEEEEecC-CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGH---LILSAGMDTKVKIWDVF-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~---~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
..+.++.||.+.|+|+.|-|. .. +++||+.|+.|++|.+. +.-.++.++.+|...+.|+ +.......+.+.|+
T Consensus 45 ~i~t~l~GH~a~VnC~~~l~~-s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv--~a~~~~~~~~~ad~ 121 (764)
T KOG1063|consen 45 LIVTTLDGHVARVNCVHWLPT-SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCV--VARSSVMTCKAADG 121 (764)
T ss_pred eeEEeccCCccceEEEEEccc-ccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEE--EeeeeEEEeeccCc
Confidence 356789999999999999998 55 89999999999999995 2235666777766655554 43222333337899
Q ss_pred eEEEEECCCCc--EEEEee--cC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--cEEEEEccCCCCeeEEEEe
Q 007855 363 NIKYWDTETGQ--VIRTFS--TG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 363 ~I~vWd~~t~~--~i~~~~--~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~~~~~~~~h~~~I~~i~~s 435 (587)
.+.+||.+..+ +...+. .+ -.+.|+++.+ ..+..+++.|+.+..|.++.-.+. ..+.++.+|.+.|.+|+|.
T Consensus 122 ~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~ 200 (764)
T KOG1063|consen 122 TVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFA 200 (764)
T ss_pred eEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhh
Confidence 99999996555 222222 22 2345666677 345567778888888888876543 5677889999999999998
Q ss_pred cCC---CEEEEEECCCCEEEEECCCCe------------------------EEE------EeecCCCcceeEEEEeCCCC
Q 007855 436 DNN---RRFVTSSDDKSLRVWEFGIPV------------------------VIK------YISEPHMHSMPSISLHPNTN 482 (587)
Q Consensus 436 p~~---~~l~s~s~Dg~I~iwd~~~~~------------------------~~~------~~~~~~~~~i~~i~~sp~g~ 482 (587)
..+ -+|+++|.|..||||.+.... .+. .+..+|...|.++-|+|.+.
T Consensus 201 ~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~ 280 (764)
T KOG1063|consen 201 RLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL 280 (764)
T ss_pred ccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence 644 478999999999999874321 011 12246889999999999999
Q ss_pred EEEEEECCCeEEEEEcCCceee----cccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC---CeeEEEEe
Q 007855 483 WLAAQSLDNQILIYSTRERFQL----NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---CKVFRTLK 555 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t---~~~~~~l~ 555 (587)
.|+++|.|.++.+|......-+ .+.....+. .+......|+|++..+++-+..|-.++|..+. ......+.
T Consensus 281 ~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~--a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iS 358 (764)
T KOG1063|consen 281 DLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGS--AGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVIS 358 (764)
T ss_pred hheecccCcceEEEecCCccceEEEEEEeeccccc--ccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccc
Confidence 9999999999999986544111 111122222 34456688999999999999999999998333 23455667
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 556 CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 556 ~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+|...|.+++|+| .+.+|+|+|.|-+-||+
T Consensus 359 GH~~~V~dv~W~p-sGeflLsvs~DQTTRlF 388 (764)
T KOG1063|consen 359 GHVDGVKDVDWDP-SGEFLLSVSLDQTTRLF 388 (764)
T ss_pred cccccceeeeecC-CCCEEEEeccccceeee
Confidence 8999999999999 88899999999998886
No 136
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=1.8e-20 Score=194.28 Aligned_cols=284 Identities=19% Similarity=0.218 Sum_probs=219.6
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee--EEEcccCCceeeEEEecC-----------CCeEEEEeCCCeEE
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM--RTYMGHSKAVRDISFCND-----------GTKFLTASYDKNIK 365 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fs~d-----------g~~l~s~s~Dg~I~ 365 (587)
..++.|.+. ...|.....|..++|||+..-.+.- ..+..|+..|+++.--|- ...|++|+.|++|+
T Consensus 327 ~IA~~Fdet-~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIR 405 (1080)
T KOG1408|consen 327 AIACQFDET-TDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIR 405 (1080)
T ss_pred eeEEEecCC-CceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEE
Confidence 456778988 7788888999999999995444332 334468888888876551 23689999999999
Q ss_pred EEECCCC---cEEEEe-----------------------------------ecCCcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 366 YWDTETG---QVIRTF-----------------------------------STGKIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 366 vWd~~t~---~~i~~~-----------------------------------~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
+|++..+ +..+.- .......+++++|++ ..|++|..-|.
T Consensus 406 lW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g---qhLAsGDr~Gn 482 (1080)
T KOG1408|consen 406 LWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG---QHLASGDRGGN 482 (1080)
T ss_pred EeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc---ceecccCccCc
Confidence 9999763 111110 001233567777765 47999999999
Q ss_pred EEEEeCCCCcEEEEEccCCCCeeEEEEec---CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC--C
Q 007855 408 IVQWDMNTKEITQEYDQHLGAVNTITFVD---NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT--N 482 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g--~ 482 (587)
|++|++...+.+..+..|...|.|+.|+. ..++|++++.|..|.|||....-.+......|...|+++.|.-+| .
T Consensus 483 lrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~ 562 (1080)
T KOG1408|consen 483 LRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNR 562 (1080)
T ss_pred eEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCce
Confidence 99999999999999999999999999984 357899999999999999987766666666799999999999887 6
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCC
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEG 559 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~---h~~ 559 (587)
.+++++.|..|.+-..+.............-.....+.+++..|..+++++++.|..|+||++.+++..+.|++ |.+
T Consensus 563 ~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG 642 (1080)
T KOG1408|consen 563 KMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEG 642 (1080)
T ss_pred EEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCC
Confidence 78888888877653322111111111111112245677899999999999999999999999999999999975 667
Q ss_pred CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 560 VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
....+...| .+-+|+|...|.+|.++|
T Consensus 643 ~lIKv~lDP-SgiY~atScsdktl~~~D 669 (1080)
T KOG1408|consen 643 DLIKVILDP-SGIYLATSCSDKTLCFVD 669 (1080)
T ss_pred ceEEEEECC-CccEEEEeecCCceEEEE
Confidence 888999999 888999999999999987
No 137
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=184.89 Aligned_cols=285 Identities=16% Similarity=0.256 Sum_probs=225.0
Q ss_pred CCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCc-EEEEEeCCCe
Q 007855 242 GGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTK 320 (587)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~-~L~sgs~Dg~ 320 (587)
+++....++++..+...+..|...|.|-...... ..++.+.--..+|.+.+|.|+ |+ .+++++.-..
T Consensus 214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N-----------~~lqS~~l~~fPi~~a~f~p~-G~~~i~~s~rrky 281 (514)
T KOG2055|consen 214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN-----------PKLQSIHLEKFPIQKAEFAPN-GHSVIFTSGRRKY 281 (514)
T ss_pred CCceEEEecCCCceEEEecCCCcEEEEEecCccC-----------hhheeeeeccCccceeeecCC-CceEEEecccceE
Confidence 3455556788888888899999999886655321 245666666789999999999 55 9999999999
Q ss_pred EEEEecCCCCeee--EEEcccC-CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCc
Q 007855 321 VKIWDVFNSGKCM--RTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 397 (587)
Q Consensus 321 I~iWd~~~~~~~~--~~~~~h~-~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 397 (587)
++.||+ .+.+.. ....++. ..+.....++++++|+..+..|.|.|....+++.+..++.......++|..++ .
T Consensus 282 ~ysyDl-e~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSds---k 357 (514)
T KOG2055|consen 282 LYSYDL-ETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDS---K 357 (514)
T ss_pred EEEeec-cccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCC---c
Confidence 999999 555433 2333443 46788889999999999999999999999999999999998888888888544 5
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe--eEEEEecCCCEEEEEECCCCEEEEECCC------CeEEEEeecCCC
Q 007855 398 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV--NTITFVDNNRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHM 469 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I--~~i~~sp~~~~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~ 469 (587)
.|++++.+|.|++||+++..++..+.. .+.| +++|.++++.+|++||..|.|.|||..+ +++++.+.. ..
T Consensus 358 ~l~~~~~~GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dN-Lt 435 (514)
T KOG2055|consen 358 ELLASGGTGEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDN-LT 435 (514)
T ss_pred EEEEEcCCceEEEEecCCcceEEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhh-hh
Confidence 788888899999999999988888753 3444 5677779999999999999999999653 556665543 56
Q ss_pred cceeEEEEeCCCCEEEEEEC--CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 470 HSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
..|+++.|+++.+.||.+|. .+.+++-.+.+........... ..-+.++|++|||.|.||+.|...|+|.+|.+.
T Consensus 436 t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n--~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 436 TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN--TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC--CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 78999999999999998875 4678887766543332222221 224678999999999999999999999999874
No 138
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.87 E-value=1.9e-20 Score=179.20 Aligned_cols=291 Identities=18% Similarity=0.337 Sum_probs=216.6
Q ss_pred EEcCCCCCeEEEEEcc----CCCcEEEEEeCCCeEEEEecCCCC--eeeEEEc--ccCCceeeEEEecC----CCeEEEE
Q 007855 291 TWSGHTKGVSAIRFFP----KYGHLILSAGMDTKVKIWDVFNSG--KCMRTYM--GHSKAVRDISFCND----GTKFLTA 358 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp----~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~--~h~~~V~~l~fs~d----g~~l~s~ 358 (587)
...+|+.+|..++|.+ +....+++++. .+|.||+....+ ..++.+. .|......++|+-+ ..+|+.+
T Consensus 33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~ 111 (385)
T KOG1034|consen 33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG 111 (385)
T ss_pred hhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence 3457999999999985 22456676664 678999885444 4445543 36777888888763 4478899
Q ss_pred eCCCeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCCCeeEEEE
Q 007855 359 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITF 434 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~~I~~i~~ 434 (587)
+.-|.|+|.|+.++++...+.. +..+.-+.++|.. .+++++++.|..|++|++++..++..+ .+|.+.|.++.|
T Consensus 112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~--~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~ 189 (385)
T KOG1034|consen 112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDR--PQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF 189 (385)
T ss_pred cceeEEEEEecchhhhccceeccCccchhhhcCCCC--CcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence 9999999999999999887764 4566678888854 479999999999999999999988876 579999999999
Q ss_pred ecCCCEEEEEECCCCEEEEECCCCeEEEE---------------------------eecCCCcceeEEEEeCCCCEEEEE
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKY---------------------------ISEPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~---------------------------~~~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
+.++.+|++++.|.+|++|++..+..... ....|...|.|+.|- |.++++-
T Consensus 190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk 267 (385)
T KOG1034|consen 190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK 267 (385)
T ss_pred cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence 99999999999999999999974321111 111244445555554 5789999
Q ss_pred ECCCeEEEEEcC-Cceeec----------ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE--EEE
Q 007855 488 SLDNQILIYSTR-ERFQLN----------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RTL 554 (587)
Q Consensus 488 s~dg~I~iwd~~-~~~~~~----------~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~--~~l 554 (587)
+-++.|..|..- -...+. .+..+.-.....+....+|.|-+++|+.|...|.|++||++..... .++
T Consensus 268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl 347 (385)
T KOG1034|consen 268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL 347 (385)
T ss_pred ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence 999999999762 111111 1112222222334555778888999999999999999999887652 222
Q ss_pred ec--CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 555 KC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 555 ~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.. ....|...+|+. ++++|+.+.+||+|.-||
T Consensus 348 ~~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 348 THSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWD 381 (385)
T ss_pred Eeccccceeeeeeecc-cCcEEEEEeCCCcEEEEE
Confidence 22 234789999999 888999999999999997
No 139
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=3e-20 Score=176.99 Aligned_cols=229 Identities=17% Similarity=0.310 Sum_probs=189.5
Q ss_pred cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCC-CcEEEEEeCCCeEEEEecCCCC
Q 007855 252 KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVFNSG 330 (587)
Q Consensus 252 ~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~-g~~L~sgs~Dg~I~iWd~~~~~ 330 (587)
...+.++.+.|.+++.|-... .+.+..+..|.+.|+++.|.+.. ...|++|+.||.|.+|++ ...
T Consensus 52 s~~~~aSGssDetI~IYDm~k-------------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~-~~W 117 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRK-------------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRV-GSW 117 (362)
T ss_pred cceeEeccCCCCcEEEEeccc-------------hhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEc-CCe
Confidence 456777777777777774432 34566788899999999999872 138999999999999999 788
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.++.++.+|.+.|+.|+.+|.|++-++.+.|+.+++||+-+|+.-...........+.|.+.++ .|+.+.. ..|-+
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd---~F~v~~~-~~i~i 193 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGD---HFVVSGR-NKIDI 193 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCC---EEEEEec-cEEEE
Confidence 9999999999999999999999999999999999999999999988888888888899997654 4555554 57889
Q ss_pred EeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEE--eCCCCEEEEEE
Q 007855 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL--HPNTNWLAAQS 488 (587)
Q Consensus 411 wD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~--sp~g~~l~~~s 488 (587)
|.+.+..+...+. ....+.|+.|. ++..|++|++|+.|.+||.....+...+ ..|...|..+.+ .|.+.+|++++
T Consensus 194 ~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~-~AH~~RVK~i~~~~~~~~~~lvTaS 270 (362)
T KOG0294|consen 194 YQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEF-LAHENRVKDIASYTNPEHEYLVTAS 270 (362)
T ss_pred EecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceee-ecchhheeeeEEEecCCceEEEEec
Confidence 9888877665554 33667888887 5668999999999999999987666555 469999999884 45678999999
Q ss_pred CCCeEEEEEcCCc
Q 007855 489 LDNQILIYSTRER 501 (587)
Q Consensus 489 ~dg~I~iwd~~~~ 501 (587)
.||.|++||++..
T Consensus 271 SDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 271 SDGFIKVWDIDME 283 (362)
T ss_pred cCceEEEEEcccc
Confidence 9999999998765
No 140
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=5e-22 Score=206.69 Aligned_cols=237 Identities=20% Similarity=0.430 Sum_probs=206.5
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
.+..|...|.|+..-.. +..+++|+.|..+-||.+ .....+..|.+|..+|.+|.|+.+..+|++|+.+|+|++||++
T Consensus 23 ~~~~hsaav~~lk~~~s-~r~~~~Gg~~~k~~L~~i-~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDle 100 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKS-SRSLVTGGEDEKVNLWAI-GKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLE 100 (825)
T ss_pred hhhhhhhhhceeeeecc-ceeeccCCCceeeccccc-cCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehh
Confidence 44568899999998444 899999999999999999 5666666799999999999999999999999999999999999
Q ss_pred CCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 371 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 371 t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
.++.++++..+. .+..+.|+|.. .+++.|+.|+.+.+||++..-+...+.+|...|.++.|+|+|++++++++|..
T Consensus 101 eAk~vrtLtgh~~~~~sv~f~P~~---~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t 177 (825)
T KOG0267|consen 101 EAKIVRTLTGHLLNITSVDFHPYG---EFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT 177 (825)
T ss_pred hhhhhhhhhccccCcceeeeccce---EEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence 999988887654 34567777765 46788999999999999998899999999999999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
++|||+..++.+..+. .|...+.++.|+|..-+++.|+.|++|++||+++...+...... ...|.++.|+|++.
T Consensus 178 vki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~-----~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 178 VKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE-----TDGVRSLAFNPDGK 251 (825)
T ss_pred eeeecccccccccccc-cccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc-----cCCceeeeecCCce
Confidence 9999999999888875 48889999999999999999999999999999876655443333 45677899999999
Q ss_pred EEEEEcCCC
Q 007855 530 FVMSGDGEG 538 (587)
Q Consensus 530 ~L~sgs~dG 538 (587)
.+++|....
T Consensus 252 ~~~~G~q~s 260 (825)
T KOG0267|consen 252 IVLSGEQIS 260 (825)
T ss_pred eeecCchhh
Confidence 999997664
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=8e-22 Score=205.15 Aligned_cols=254 Identities=19% Similarity=0.389 Sum_probs=216.4
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVV 387 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~ 387 (587)
..+++....+-.+++|+.. .+..|...|.++..-..++.+++|+.|..+-+|.+.....+..+..+. .+.++
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~-------~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl 76 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTR-------EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESL 76 (825)
T ss_pred ccccceeeeeeccccccch-------hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceee
Confidence 4455566666777888872 344688889999887788999999999999999988777777766554 44578
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 467 (587)
.|.+.. .+|++|..+|.|++||+...+.++.+.+|...+.++.|+|-+.+++.|+.|+.+++||++...+...+..
T Consensus 77 ~f~~~E---~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s- 152 (825)
T KOG0267|consen 77 TFDTSE---RLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS- 152 (825)
T ss_pred ecCcch---hhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC-
Confidence 887754 6899999999999999999999999999999999999999999999999999999999998888877765
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
|...+.++.|+|+|.+++.++.|..++|||+..+..+ ..|.+| .+.+..+.|+|..-++++|+.|+.|+|||+++
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~---~ef~~~--e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLS---KEFKSH--EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeecccccccc---cccccc--cccccccccCchhhhhccCCCCceeeeeccce
Confidence 8889999999999999999999999999999877554 455656 46677788999999999999999999999999
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 548 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 548 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
.+.+.........|.+.+|+| ++..+++|..
T Consensus 228 fe~I~s~~~~~~~v~~~~fn~-~~~~~~~G~q 258 (825)
T KOG0267|consen 228 FEVISSGKPETDGVRSLAFNP-DGKIVLSGEQ 258 (825)
T ss_pred eEEeeccCCccCCceeeeecC-CceeeecCch
Confidence 999998888888999999999 6666666544
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.85 E-value=6.3e-20 Score=183.55 Aligned_cols=260 Identities=17% Similarity=0.244 Sum_probs=197.1
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe---eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
+|.+++|...+--.+++.+.|..|++|.- .++ .-..-......-.|++......++++|+..+.|+|||++...+
T Consensus 36 g~~s~~w~~~n~lvvas~~gdk~~~~~~K--~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~ 113 (673)
T KOG4378|consen 36 GDFSFNWQRRNFLVVASMAGDKVMRIKEK--DGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLI 113 (673)
T ss_pred cceeeeccccceEEEeecCCceeEEEecc--cCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHHHH
Confidence 49999999872223344566888999975 332 1111111222445555555568999999999999999995555
Q ss_pred EEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-CCeeEEEEecCCCE-EEEEECCCCEE
Q 007855 375 IRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDNNRR-FVTSSDDKSLR 451 (587)
Q Consensus 375 i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-~~I~~i~~sp~~~~-l~s~s~Dg~I~ 451 (587)
.+.+..+. .+.++...+.+ .+|++++..|.|.+..+.++.....|.... ..|.-+.|++..+. |.+++++|.|.
T Consensus 114 hr~lkdh~stvt~v~YN~~D---eyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 114 HRFLKDHQSTVTYVDYNNTD---EYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred hhhccCCcceeEEEEecCCc---ceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 44444332 33344444433 589999999999999999998877776553 44568999987765 66789999999
Q ss_pred EEECCCCeEEEEeecCCCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 452 VWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 452 iwd~~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
+||+....++......|..+...|||+|. ..+|++.+.|..|.+||++.......+ . ...+...++|+++|.+
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l---~---y~~Plstvaf~~~G~~ 264 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRL---T---YSHPLSTVAFSECGTY 264 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccccccee---e---ecCCcceeeecCCceE
Confidence 99999999998888899999999999995 567888999999999999865433221 1 1345567999999999
Q ss_pred EEEEcCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEcC
Q 007855 531 VMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t~-~~~~~l~~h~~~V~~v~~sp 568 (587)
|++|...|.|..||++.. .++..+.+|...|++++|-|
T Consensus 265 L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~ 303 (673)
T KOG4378|consen 265 LCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP 303 (673)
T ss_pred EEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence 999999999999999865 57888999999999999987
No 143
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=176.54 Aligned_cols=292 Identities=16% Similarity=0.166 Sum_probs=219.0
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC-----CCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCe
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF-----NSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~-----~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~ 363 (587)
+-+.+|.+.|++|.|+.+ +++|++|+.|..++||++. ...+++.... .|...|.|++|....++|++|..+++
T Consensus 50 KD~~~H~GCiNAlqFS~N-~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~ 128 (609)
T KOG4227|consen 50 KDVREHTGCINALQFSHN-DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT 128 (609)
T ss_pred hhhhhhccccceeeeccC-CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence 456799999999999999 9999999999999999982 2335554443 35689999999999999999999999
Q ss_pred EEEEECCCCcEEEEeecCC---cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EE--EEEccCCCCeeEEEEecC
Q 007855 364 IKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-IT--QEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~--~~~~~h~~~I~~i~~sp~ 437 (587)
|.+.|+++.+.+..+.... .++-+..+|. .++|++.+.++.|.+||.+... .+ ...........++.|+|.
T Consensus 129 VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~---DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~ 205 (609)
T KOG4227|consen 129 VIKHDIETKQSIYVANENNNRGDVYHMDQHPT---DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPE 205 (609)
T ss_pred eEeeecccceeeeeecccCcccceeecccCCC---CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCC
Confidence 9999999999999887655 5666777775 3789999999999999998764 21 122234556788899986
Q ss_pred CC-EEEEEECCCCEEEEECCCCeEEEEee-----cCC-CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec-ccc-
Q 007855 438 NR-RFVTSSDDKSLRVWEFGIPVVIKYIS-----EPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKK- 508 (587)
Q Consensus 438 ~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~-----~~~-~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~-~~~- 508 (587)
.. +|++.+..+-+.+||++.+....... .+. .....++.|+|+|+.|++.-....-.+||+-+..+.. ...
T Consensus 206 ~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 206 TPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred CceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 54 56777888899999998754321111 111 2234678899999999888777777788876532221 111
Q ss_pred eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------C-------------eeEEEEecCCCCEEEEE
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------C-------------KVFRTLKCHEGVCIGCE 565 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t----------~-------------~~~~~l~~h~~~V~~v~ 565 (587)
...|..+...+.+++|.-|- -+++|+.+-.|++|.+.. | +.+..+++|...++.+.
T Consensus 286 N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVR 364 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVR 364 (609)
T ss_pred CCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEeccccccccee
Confidence 11133334445667776554 489999999999998732 1 23567899999999999
Q ss_pred EcCCCCCEEEEEECCCcEEEcC
Q 007855 566 WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 566 ~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|+| ...+|++.|....|+||-
T Consensus 365 F~~-H~~~l~SSGVE~~~KlWS 385 (609)
T KOG4227|consen 365 FSQ-HNNLLVSSGVENSFKLWS 385 (609)
T ss_pred ecC-CcceEeccchhhheeccc
Confidence 999 667999999999999993
No 144
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.85 E-value=9.1e-20 Score=177.27 Aligned_cols=249 Identities=18% Similarity=0.296 Sum_probs=180.9
Q ss_pred EEcCCCCCeEEEEEccC-CCcEEEEEeCCCeEEEEecCC---------------CCeeeEEEcccCCceeeEEEec-CCC
Q 007855 291 TWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVFN---------------SGKCMRTYMGHSKAVRDISFCN-DGT 353 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~-~g~~L~sgs~Dg~I~iWd~~~---------------~~~~~~~~~~h~~~V~~l~fs~-dg~ 353 (587)
..-+|.+.|+.++-++. +..+.++-+..|.|+||++.. ..+++.++.+|...=..|+||| ...
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g 225 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTG 225 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccc
Confidence 34478888998888876 246777778899999999821 2245556666666666777766 122
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEE
Q 007855 354 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT 433 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~ 433 (587)
.|++|..-+.|++|...+|.- -+. ...+.+|...|-.|+
T Consensus 226 ~LlsGDc~~~I~lw~~~~g~W-------------------------------------~vd----~~Pf~gH~~SVEDLq 264 (440)
T KOG0302|consen 226 RLLSGDCVKGIHLWEPSTGSW-------------------------------------KVD----QRPFTGHTKSVEDLQ 264 (440)
T ss_pred ccccCccccceEeeeeccCce-------------------------------------eec----Cccccccccchhhhc
Confidence 355555555566655443221 000 123457999999999
Q ss_pred EecC-CCEEEEEECCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec
Q 007855 434 FVDN-NRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 434 ~sp~-~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
|+|. ...|++||.||+|+|||++.+ +....+...|...|..|.|+....+|++|+.||+++|||++....-.+...|.
T Consensus 265 WSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk 344 (440)
T KOG0302|consen 265 WSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFK 344 (440)
T ss_pred cCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEE
Confidence 9985 457999999999999999987 22222335788999999999988899999999999999998765555666777
Q ss_pred ccccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCe----------------eEEEEecCC--CCEEEEEEcCCCCC
Q 007855 512 GHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCK----------------VFRTLKCHE--GVCIGCEWHPLEQS 572 (587)
Q Consensus 512 ~~~~~~~i~~l~~spd-g~~L~sgs~dG~I~vwd~~t~~----------------~~~~l~~h~--~~V~~v~~sp~~~~ 572 (587)
.| ...|++|.|+|. ...|++++.|..|.+||+.--. +-+.+-.|. ..|..+.||++-..
T Consensus 345 ~H--k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG 422 (440)
T KOG0302|consen 345 YH--KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPG 422 (440)
T ss_pred ec--cCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCC
Confidence 77 678999999995 4567888899999999984211 011222353 36888999999889
Q ss_pred EEEEEECCCc
Q 007855 573 KVATCGWDGL 582 (587)
Q Consensus 573 ~l~s~g~DG~ 582 (587)
+|++.+.||.
T Consensus 423 ~lvsTa~dGf 432 (440)
T KOG0302|consen 423 LLVSTAIDGF 432 (440)
T ss_pred eEEEecccce
Confidence 9999999984
No 145
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.84 E-value=3.1e-20 Score=172.87 Aligned_cols=298 Identities=13% Similarity=0.192 Sum_probs=205.7
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCC
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
+|..++..|++|.+.|+++.|-.+ .+|.+|..-|.|++|++ .+...+..+. .|...|+.+.--|+ ..|.+-+.|+
T Consensus 2 ~pPdP~fvLRp~~~~v~s~~fqa~--~rL~sg~~~G~V~~w~l-qt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~ 77 (323)
T KOG0322|consen 2 VPPDPFFVLRPHSSSVTSVLFQAN--ERLMSGLSVGIVKMWVL-QTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDP 77 (323)
T ss_pred CCCCCeeEeccccchheehhhccc--hhhhcccccceEEEEEe-ecCccchhhhhhccceeeceeecCC-cchhhcCCCc
Confidence 355667788999999999999887 45999999999999999 6666666676 67888999998887 5688899999
Q ss_pred eEEEEECCCCcEEEEeec-CCcceEEEEc--cCCCCC-cEEEEEeCC-CcEEEEeCCCCcEEEEE----ccCCCCeeEEE
Q 007855 363 NIKYWDTETGQVIRTFST-GKIPYVVKLN--PDDDKQ-NILLAGMSD-KKIVQWDMNTKEITQEY----DQHLGAVNTIT 433 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~-~~~~~~~~~~--~~~~~~-~~l~sg~~d-g~I~iwD~~t~~~~~~~----~~h~~~I~~i~ 433 (587)
.+.+|++..+..+..-.. ......+.++ +.+... .+++.-+.. ..+.+-|......++.. ....+.+.|..
T Consensus 78 ~L~lw~ia~s~~i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~ 157 (323)
T KOG0322|consen 78 LLILWTIAYSAFISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQD 157 (323)
T ss_pred eEEEEEccCcceEEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeee
Confidence 999999987654433221 1111111111 111111 111111111 01222232222222222 23456777777
Q ss_pred Eec-CCC--EEEEEECCCCEEEEECCCCeEEEEee---------cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCc
Q 007855 434 FVD-NNR--RFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 434 ~sp-~~~--~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
+.- ++. .+++|..+|.|.+||+.++..+..+. ..|..++.++.+.+.-..=++|+.+..+..|++...
T Consensus 158 ~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s 237 (323)
T KOG0322|consen 158 KDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHS 237 (323)
T ss_pred ccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccc
Confidence 532 233 46778899999999999863332221 247788999999887666778888888999988643
Q ss_pred eeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 502 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 502 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
...........-. ...+..+.+-||++.+|+++.||+|+||.++++.++..++-|...|++++|+| +..++|++|.|+
T Consensus 238 ~gslq~~~e~~lk-npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfsp-d~~lmAaaskD~ 315 (323)
T KOG0322|consen 238 TGSLQIRKEITLK-NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSP-DCELMAAASKDA 315 (323)
T ss_pred cCcccccceEEec-CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCC-CCchhhhccCCc
Confidence 1111111111111 23355688999999999999999999999999999999999999999999999 677999999999
Q ss_pred cEEEcC
Q 007855 582 LIKYWD 587 (587)
Q Consensus 582 ~I~iWD 587 (587)
+|.+|+
T Consensus 316 rISLWk 321 (323)
T KOG0322|consen 316 RISLWK 321 (323)
T ss_pred eEEeee
Confidence 999996
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.4e-19 Score=184.93 Aligned_cols=246 Identities=20% Similarity=0.303 Sum_probs=196.0
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.+...|.+|.+.|++|+..|.|.+|++|+.||+|+||.+.+|.|+.++.....+.+++|+|.+... +|+++. ...+.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~-vLAvA~-~~~~~i 468 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLC-VLAVAV-GECVLI 468 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCce-eEEEEe-cCceEE
Confidence 345568899999999999999999999999999999999999999999999999999999987642 333333 333555
Q ss_pred EeCCCCc-------------------------------------EEEEEccCCCCeeEEEEecCCCEEEEEECC---CCE
Q 007855 411 WDMNTKE-------------------------------------ITQEYDQHLGAVNTITFVDNNRRFVTSSDD---KSL 450 (587)
Q Consensus 411 wD~~t~~-------------------------------------~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D---g~I 450 (587)
.+..-|. -++..-.|...|+.+.|+..|.+|++..-+ ..|
T Consensus 469 vnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~V 548 (733)
T KOG0650|consen 469 VNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSV 548 (733)
T ss_pred eCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceE
Confidence 4432110 012223478899999999999999998664 468
Q ss_pred EEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 451 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
.|+.+.......-+. ...+.+.++.|+|...+|++++ ...|+|||+.....+..+. .+ ..+|..++.+|.|.-
T Consensus 549 liHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~--tg---~kwiS~msihp~GDn 621 (733)
T KOG0650|consen 549 LIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLL--TG---SKWISSMSIHPNGDN 621 (733)
T ss_pred EEEecccccccCchh-hcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHh--cC---CeeeeeeeecCCCCe
Confidence 999987765554333 2566799999999999998887 5669999997654443322 22 366778999999999
Q ss_pred EEEEcCCCcEEEEeCCC-CeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 531 VMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
|+.|+.|++++.||+.- .+++++++.|...|++++||+ .-.++++|+.||++.|+
T Consensus 622 li~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vf 677 (733)
T KOG0650|consen 622 LILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVF 677 (733)
T ss_pred EEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEE
Confidence 99999999999999975 478899999999999999999 67799999999999886
No 147
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.84 E-value=4.4e-20 Score=184.86 Aligned_cols=236 Identities=18% Similarity=0.309 Sum_probs=195.0
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC---cEEEEe---ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTF---STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~---~~i~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
.|..-|.++.++...+++++|+. |.|+|||+... .++..+ .....+..+.+.+++ +.|++|+.-.+|.||
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg---rtLivGGeastlsiW 492 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG---RTLIVGGEASTLSIW 492 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC---ceEEeccccceeeee
Confidence 58888999999999999999986 88999999643 233333 234455567777755 579999999999999
Q ss_pred eCCCCc--EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 412 DMNTKE--ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 412 D~~t~~--~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
|+.... +..++....-.+..++.+||.+..++++.||.|.|||+.+...++.+. +|...+.||.++++|..|.+|+.
T Consensus 493 DLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~dGtklWTGGl 571 (705)
T KOG0639|consen 493 DLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKDGTKLWTGGL 571 (705)
T ss_pred eccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeeccc-CCCCCceeEEecCCCceeecCCC
Confidence 998654 334444444567889999999999999999999999999998888875 69999999999999999999999
Q ss_pred CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC
Q 007855 490 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 490 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~ 569 (587)
|++|+.||++.+.++. .|.....|.++.++|.+.+|+.|-.++.+.|......+ ...+..|...|.++.|.+
T Consensus 572 DntvRcWDlregrqlq------qhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~-kyqlhlheScVLSlKFa~- 643 (705)
T KOG0639|consen 572 DNTVRCWDLREGRQLQ------QHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLHESCVLSLKFAY- 643 (705)
T ss_pred ccceeehhhhhhhhhh------hhhhhhhheecccCCCccceeeecccCcEEEEecCCcc-ceeecccccEEEEEEecc-
Confidence 9999999999875442 34446778889999999999999999999998865443 445667999999999999
Q ss_pred CCCEEEEEECCCcEEEc
Q 007855 570 EQSKVATCGWDGLIKYW 586 (587)
Q Consensus 570 ~~~~l~s~g~DG~I~iW 586 (587)
-+.++++.|.|..+..|
T Consensus 644 cGkwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 644 CGKWFVSTGKDNLLNAW 660 (705)
T ss_pred cCceeeecCchhhhhhc
Confidence 78899999999998888
No 148
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.6e-20 Score=175.30 Aligned_cols=272 Identities=16% Similarity=0.236 Sum_probs=196.6
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc--e
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--Y 385 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~ 385 (587)
..+|++-..|.|+|||. .+++.+..+.++...+..+.|.. ....+.+|+.||+|++||+++......+.....+ .
T Consensus 41 ~~vav~lSngsv~lyd~-~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~ 119 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDK-GTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTP 119 (376)
T ss_pred eeEEEEecCCeEEEEec-cchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCc
Confidence 57888888999999999 77999999999999999999987 4678999999999999999998776666543333 2
Q ss_pred EEEEccCCCCCcEEEEEe----CCCcEEEEeCCCCcE-EEE-EccCCCCeeEEEEecC-CCEEEEEECCCCEEEEECCCC
Q 007855 386 VVKLNPDDDKQNILLAGM----SDKKIVQWDMNTKEI-TQE-YDQHLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIP 458 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~----~dg~I~iwD~~t~~~-~~~-~~~h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~ 458 (587)
.+++... -+.+++++|+ .+-.|.+||+|..+. +.. ...|...|++|.|+|+ .+.|++||.||.|.|||+...
T Consensus 120 f~~ld~n-ck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 120 FICLDLN-CKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred ceEeecc-CcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 3333332 1346777775 467899999998765 544 4579999999999985 568999999999999999765
Q ss_pred eE----EEEeecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceeeccccee-------cccccccceEEEEEcC
Q 007855 459 VV----IKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRF-------AGHIVAGYACQVNFSP 526 (587)
Q Consensus 459 ~~----~~~~~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-------~~~~~~~~i~~l~~sp 526 (587)
.. ...+ .+..+|.++.|+.++ +.|.+-+......+|++..+......... .......++...-...
T Consensus 199 ~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~ 276 (376)
T KOG1188|consen 199 NEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPG 276 (376)
T ss_pred cchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCC
Confidence 32 2222 366789999999877 45888899999999999876533221111 0111123343332233
Q ss_pred CCCEEEEEcC-CCcEEEEeCC---C---CeeEEEEec-CCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 527 DGRFVMSGDG-EGKCWFWDWK---S---CKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 527 dg~~L~sgs~-dG~I~vwd~~---t---~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++..++.++. .|...++-+. + .+.+..+.+ |...|.++.|.. .+.+++|||.||.+.+|
T Consensus 277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~-~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDV-KNDVLYTGGEDGLLQAW 343 (376)
T ss_pred CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhc-ccceeeccCCCceEEEE
Confidence 4445544443 5565555443 2 344566666 667888888886 67799999999999999
No 149
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=5.2e-19 Score=168.54 Aligned_cols=245 Identities=19% Similarity=0.329 Sum_probs=178.2
Q ss_pred EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-----EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcE
Q 007855 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 408 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-----~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 408 (587)
..+.+|.+.|++++|+.||++|++++.|++|+||+++... +++.--.-..+..+.|.|+.. .++++.-...+|
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~--s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCK--SVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcc--eEEEEEccCCEE
Confidence 3678999999999999999999999999999999997632 222222223677888988765 567777777889
Q ss_pred EEEeCCCC---cEEE---------EEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEE
Q 007855 409 VQWDMNTK---EITQ---------EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 476 (587)
Q Consensus 409 ~iwD~~t~---~~~~---------~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~ 476 (587)
++|-+... .... --..|.-.|..+-...++.+|++++.|..|.+|+++ ++.+..+.. ....-...+
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-nq~~n~~aa 235 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-NQSSNYDAA 235 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-cccccccee
Confidence 99976532 1111 112356677778888889999999999999999998 777777653 445567789
Q ss_pred EeCCCCEEEEEECCCeEEEEEcC---Cc--eeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----
Q 007855 477 LHPNTNWLAAQSLDNQILIYSTR---ER--FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS---- 547 (587)
Q Consensus 477 ~sp~g~~l~~~s~dg~I~iwd~~---~~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t---- 547 (587)
++|+|++|++++..-.|.+|.+- .+ +.+.....+.|| ...|..++||++...+++.+.||+++|||..-
T Consensus 236 vSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH--~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~ 313 (420)
T KOG2096|consen 236 VSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGH--QSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA 313 (420)
T ss_pred eCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccc--hhheeeeeeCCCcceeEEEecCCcEEEeeccceEec
Confidence 99999999999999999999852 22 233445567788 56788999999999999999999999999742
Q ss_pred ---CeeEEEE----ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 548 ---CKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 548 ---~~~~~~l----~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.+.++.. .+..+.-..+..+| ++..|+.. ....|+++
T Consensus 314 ~qDpk~Lk~g~~pl~aag~~p~RL~lsP-~g~~lA~s-~gs~l~~~ 357 (420)
T KOG2096|consen 314 GQDPKILKEGSAPLHAAGSEPVRLELSP-SGDSLAVS-FGSDLKVF 357 (420)
T ss_pred CCCchHhhcCCcchhhcCCCceEEEeCC-CCcEEEee-cCCceEEE
Confidence 2233332 12223334889999 55444433 23345544
No 150
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.83 E-value=9.8e-19 Score=167.04 Aligned_cols=272 Identities=18% Similarity=0.271 Sum_probs=205.4
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCC-----------eeeEEE-cccCCceeeEEEe-------cCCCeEEEEe
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG-----------KCMRTY-MGHSKAVRDISFC-------NDGTKFLTAS 359 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-----------~~~~~~-~~h~~~V~~l~fs-------~dg~~l~s~s 359 (587)
...+.|+|+ |..|++-+.|..+.+|++.... +....+ ......|.+.+|- |+..++++.+
T Consensus 52 ~kgckWSPD-GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss 130 (406)
T KOG2919|consen 52 LKGCKWSPD-GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS 130 (406)
T ss_pred hccceeCCC-CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence 446789999 9999999999999999983211 001111 1234567888886 5678999999
Q ss_pred CCCeEEEEECCCCcEEEEeecC------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeC-CCCcEEEEE-------ccC
Q 007855 360 YDKNIKYWDTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKEITQEY-------DQH 425 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~~~~~------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~-~t~~~~~~~-------~~h 425 (587)
.+.-|++||.-+|+....+..- ....+++|++++. .|++ +....|++||+ +.|.....+ .+.
T Consensus 131 r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGe---qlfa-GykrcirvFdt~RpGr~c~vy~t~~~~k~gq 206 (406)
T KOG2919|consen 131 RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGE---QLFA-GYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ 206 (406)
T ss_pred ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCC---eEee-cccceEEEeeccCCCCCCcchhhhhcccccc
Confidence 9999999999999988877532 2346788888775 3555 45689999999 665422221 234
Q ss_pred CCCeeEEEEecCCC-EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC-CCeEEEEEcCCcee
Q 007855 426 LGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRERFQ 503 (587)
Q Consensus 426 ~~~I~~i~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~-dg~I~iwd~~~~~~ 503 (587)
.+-|.|++|+|-.. .+++++...++-||.-....++..+. .|.+.|+.++|+++|+.|++|+. +..|..||++....
T Consensus 207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~ 285 (406)
T KOG2919|consen 207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRD 285 (406)
T ss_pred cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccc
Confidence 67789999999655 89999999999999888888877665 69999999999999999999875 67899999986432
Q ss_pred ecccceeccccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 504 LNKKKRFAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 504 ~~~~~~~~~~~~-~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
+ +..+..|.. ...-.-....|+|++|++|+.+|.|++||++. +..+..+..|...|+.++++| --.+++|++.
T Consensus 286 p--v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP-~mpilatssG 360 (406)
T KOG2919|consen 286 P--VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNP-IMPILATSSG 360 (406)
T ss_pred h--hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCc-ccceeeeccC
Confidence 2 223333322 11222366789999999999999999999998 777888888999999999999 4556777654
No 151
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.83 E-value=6e-19 Score=181.78 Aligned_cols=272 Identities=16% Similarity=0.299 Sum_probs=210.8
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
.|..++|-|++.++++.+ +..+.|||. +.|..+.++++|.+.|.|++|+.+|++|+||+.|..|.||+.. -+-+..
T Consensus 14 ci~d~afkPDGsqL~lAA--g~rlliyD~-ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k-lEG~Lk 89 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA--GSRLLVYDT-SDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK-LEGILK 89 (1081)
T ss_pred chheeEECCCCceEEEec--CCEEEEEeC-CCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccc-ccceee
Confidence 799999999955555444 357999999 8999999999999999999999999999999999999999854 344556
Q ss_pred eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC
Q 007855 378 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
+.+...+.|+.|+|... .+++++ -...-+|......... . .....|.+++|..+|.+|+.|-.+|+|.|-+-..
T Consensus 90 YSH~D~IQCMsFNP~~h---~LasCs-LsdFglWS~~qK~V~K-~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g 163 (1081)
T KOG1538|consen 90 YSHNDAIQCMSFNPITH---QLASCS-LSDFGLWSPEQKSVSK-H-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG 163 (1081)
T ss_pred eccCCeeeEeecCchHH---Hhhhcc-hhhccccChhhhhHHh-h-hhheeEEEeeecCCCcEEEEeccCceEEeecCCC
Confidence 67778888999998753 355444 3456678766543322 1 1346788999999999999999999999986543
Q ss_pred CeEEE-EeecCCCcceeEEEEeCCC-----CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEE
Q 007855 458 PVVIK-YISEPHMHSMPSISLHPNT-----NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 531 (587)
Q Consensus 458 ~~~~~-~~~~~~~~~i~~i~~sp~g-----~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L 531 (587)
...++ .-..+...+|.+++|+|+. ..+++.....++.+|.+... .+...+.+. -..+++.+.++|.|+
T Consensus 164 Eek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~-----FdP~CisYf~NGEy~ 237 (1081)
T KOG1538|consen 164 EEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALN-----FDPCCISYFTNGEYI 237 (1081)
T ss_pred CcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCC-----CCchhheeccCCcEE
Confidence 33322 2223467789999999963 47888888889999988653 332222222 223468999999999
Q ss_pred EEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 532 MSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 532 ~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.|+.|+.+.+|- +.|-.+.++-.....|+.++.+| ++..++.|+.||+|.-|+
T Consensus 238 LiGGsdk~L~~fT-R~GvrLGTvg~~D~WIWtV~~~P-NsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 238 LLGGSDKQLSLFT-RDGVRLGTVGEQDSWIWTVQAKP-NSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred EEccCCCceEEEe-ecCeEEeeccccceeEEEEEEcc-CCceEEEEEccCeeehhh
Confidence 9999999999996 67777888877778999999999 778999999999997664
No 152
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.3e-19 Score=179.84 Aligned_cols=236 Identities=19% Similarity=0.318 Sum_probs=179.5
Q ss_pred CcEEEEEeCCCeEEEEecCCCCe--ee------------------EEEcccCCceeeEEEecC-CCeEEEEeCCCeEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGK--CM------------------RTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYW 367 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~--~~------------------~~~~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vW 367 (587)
|+++|.|++|..|.|||+.--.. +. ..-.+|+.+|.+|+|+.. .+.|+|||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999999831111 11 112369999999999884 5688999999999999
Q ss_pred ECCCCcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC-CEEEEEE
Q 007855 368 DTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN-RRFVTSS 445 (587)
Q Consensus 368 d~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~-~~l~s~s 445 (587)
|+.++++..++. .+..+.++.|++... .+|++|+.|++|.+.|.|........-...+.|-.++|.|.. ..+++++
T Consensus 272 D~~~g~p~~s~~~~~k~Vq~l~wh~~~p--~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 272 DVDTGKPKSSITHHGKKVQTLEWHPYEP--SVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EcCCCCcceehhhcCCceeEEEecCCCc--eEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 999999999998 556677888888654 799999999999999999533322222356889999999855 4578888
Q ss_pred CCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCceeecccceeccc-ccccceEEE
Q 007855 446 DDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH-IVAGYACQV 522 (587)
Q Consensus 446 ~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~i~~l 522 (587)
.||+|+-+|+|.. +++..+ ..|..+|.++++++. ..++++++.++.|.+|++.....-. ...| ..-+..+|.
T Consensus 350 ddG~v~~~D~R~~~~~vwt~-~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~----v~~~~~~~~rl~c~ 424 (463)
T KOG0270|consen 350 DDGTVYYFDIRNPGKPVWTL-KAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS----VKEHSFKLGRLHCF 424 (463)
T ss_pred CCceEEeeecCCCCCceeEE-EeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc----cccccccccceeec
Confidence 9999999999987 555554 469999999999985 4678999999999999986432211 1111 112335667
Q ss_pred EEcCCCC-EEEEEcCCCcEEEEeCCCCeeE
Q 007855 523 NFSPDGR-FVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 523 ~~spdg~-~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
++.|+-. +|+.|+..+.++|||+.+...+
T Consensus 425 ~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 425 ALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccCCCcceEEEecCccceEEEeecccChhH
Confidence 7777655 4677888888999999876543
No 153
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.83 E-value=1.4e-18 Score=190.20 Aligned_cols=304 Identities=18% Similarity=0.258 Sum_probs=223.1
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC------CeeeEEEcccCCceeeEEEecCCCeEE
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS------GKCMRTYMGHSKAVRDISFCNDGTKFL 356 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fs~dg~~l~ 356 (587)
-+...++..+..|+..|..++.++..+.+|+|||.||+|++|+..+- .+...++......+.++.+.+.+..+|
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~A 1114 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFA 1114 (1431)
T ss_pred CccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEE
Confidence 34567899999999999999999986799999999999999998421 133445555678899999999999999
Q ss_pred EEeCCCeEEEEECCCC-------cEEEEeecCCcceEEEEcc-C-CCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc--cC
Q 007855 357 TASYDKNIKYWDTETG-------QVIRTFSTGKIPYVVKLNP-D-DDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QH 425 (587)
Q Consensus 357 s~s~Dg~I~vWd~~t~-------~~i~~~~~~~~~~~~~~~~-~-~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~--~h 425 (587)
+++.||.|++.+++-. .+...........++.+.. . ......++.+...+.|..||+++......++ ..
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~ 1194 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR 1194 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc
Confidence 9999999999998762 1222222233333333322 1 1222589999999999999999876555443 34
Q ss_pred CCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC---CEEEEE-E-CCCeEEEEEcCC
Q 007855 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT---NWLAAQ-S-LDNQILIYSTRE 500 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g---~~l~~~-s-~dg~I~iwd~~~ 500 (587)
.+.|++++.+|.++++++|+..|.+.+||++-..++.....++..++..+..+|-. ...+++ + ..+.|.+|++.+
T Consensus 1195 hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~ 1274 (1431)
T KOG1240|consen 1195 HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMET 1274 (1431)
T ss_pred ccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeeccc
Confidence 58899999999999999999999999999999999999988888999999988743 344444 3 578899999988
Q ss_pred ceeecccceecc----------c----ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee----------------
Q 007855 501 RFQLNKKKRFAG----------H----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV---------------- 550 (587)
Q Consensus 501 ~~~~~~~~~~~~----------~----~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~---------------- 550 (587)
+.+...+..-.+ . .........++...+.++++|+.|..|+.||......
T Consensus 1275 g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~ 1354 (1431)
T KOG1240|consen 1275 GLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNS 1354 (1431)
T ss_pred CcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCccccccccc
Confidence 754432221100 0 0011122234445567899999999999999622110
Q ss_pred --------------------------------EEEE--------ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 551 --------------------------------FRTL--------KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 551 --------------------------------~~~l--------~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
...+ ..|..+|+++++...+..+|++++.||.|+||
T Consensus 1355 ~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiW 1430 (1431)
T KOG1240|consen 1355 ESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIW 1430 (1431)
T ss_pred hhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeec
Confidence 0001 13677899998887777899999999999999
No 154
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.83 E-value=1.2e-16 Score=166.95 Aligned_cols=289 Identities=28% Similarity=0.559 Sum_probs=226.8
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeC-CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC-eEEEEeCCCe
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKN 363 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~ 363 (587)
...+..+.+|...|.++.|+|+ +.++++++. |+.+++|++ .....+..+.+|...|.+++|+|++. .+++++.|+.
T Consensus 145 ~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 145 GKLIRTLEGHSESVTSLAFSPD-GKLLASGSSLDGTIKLWDL-RTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred CeEEEEEecCcccEEEEEECCC-CCEEEecCCCCCceEEEEc-CCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 5677889999999999999999 778888885 999999999 56788889999999999999999988 5556599999
Q ss_pred EEEEECCCCcEEE-EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEccCCCCeeEEEEecCCCEE
Q 007855 364 IKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 364 I~vWd~~t~~~i~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
|++||...+..+. .+..+.......+.+.. .++++++.++.+++|++..... +..+..|...|.++.|.|++..+
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 299 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDG---SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLL 299 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcceeEeECCCC---CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEE
Confidence 9999999888877 45544443322566654 5788999999999999987664 44446789999999999988888
Q ss_pred EEEECCCCEEEEECCCCeEEEEee-cCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccce
Q 007855 442 VTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i 519 (587)
++++.|+.+.+|++.......... ..+...+..+.+.+++..++.+ ..|+.+.+|++..... ....... ..+
T Consensus 300 ~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~---~~~ 373 (466)
T COG2319 300 ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKP---LKTLEGH---SNV 373 (466)
T ss_pred EEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCce---eEEecCC---ceE
Confidence 889999999999998877666554 3466578888883332555555 6788999999876541 1111111 116
Q ss_pred EEEEEcCCCCEEEE-EcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 520 CQVNFSPDGRFVMS-GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 520 ~~l~~spdg~~L~s-gs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..+.+++ ...++. +..++.+.+|+.........+..+...+..+.+.+ ++..+++++.++.+++|+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 440 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSP-DGKSLASGSSDNTIRLWD 440 (466)
T ss_pred EEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECC-CCcEEEEecCCCcEEEEe
Confidence 6788888 544444 68899999999999888777776546788889998 777888899999999995
No 155
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=1.2e-19 Score=180.01 Aligned_cols=211 Identities=18% Similarity=0.313 Sum_probs=172.0
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEEC
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~ 369 (587)
.-.+|+..|.+|+|+....++|||||.|.+|++||+ .++++..++..|.+.|.++.|+| ...+|++|++|++|.+.|.
T Consensus 238 ~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~-~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~ 316 (463)
T KOG0270|consen 238 SASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDV-DTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDC 316 (463)
T ss_pred ccccchHHHHHHHhccccceeEEecCCCceEEEEEc-CCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeec
Confidence 345899999999999988899999999999999999 89999999999999999999999 6789999999999999999
Q ss_pred CC-CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCC-CEEEEEEC
Q 007855 370 ET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNN-RRFVTSSD 446 (587)
Q Consensus 370 ~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~-~~l~s~s~ 446 (587)
+. +..-..++....+-.+.|.+... +.++++..||.|+-+|+|.. +++.+++.|.++|.+|+++... .++++++.
T Consensus 317 R~~~~s~~~wk~~g~VEkv~w~~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~ 394 (463)
T KOG0270|consen 317 RDPSNSGKEWKFDGEVEKVAWDPHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST 394 (463)
T ss_pred cCccccCceEEeccceEEEEecCCCc--eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc
Confidence 84 33334455556666778877654 78999999999999999976 8999999999999999999754 46888999
Q ss_pred CCCEEEEECCCCeEEEEe-ecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceee
Q 007855 447 DKSLRVWEFGIPVVIKYI-SEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~-~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
|+.|++|++......... ..-..+...|+++.|+- -+++.|+..+.++|||+.+...+
T Consensus 395 d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 395 DKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred cceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 999999998654331111 11123346677777765 46777888888999998765443
No 156
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=7e-20 Score=183.33 Aligned_cols=296 Identities=21% Similarity=0.300 Sum_probs=230.6
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNI 364 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I 364 (587)
.+...|.+|.+.|..|.|... |..|+|||.|..|.+||.......+.-..+|...|....|-| +.+.+++++.||.|
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~-Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQR-GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred hhhhcccCCCCccceeeeccc-CceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 456788999999999999999 999999999999999999544445555568999999999988 55789999999999
Q ss_pred EEEECCC-CcEE---EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCC---CeeEEEE
Q 007855 365 KYWDTET-GQVI---RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLG---AVNTITF 434 (587)
Q Consensus 365 ~vWd~~t-~~~i---~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~---~I~~i~~ 434 (587)
++=.+.. +.+. ....+...+..+++.|... ..|++++.|+.+.-+|++++.....+ ..+.. ...+|+.
T Consensus 212 r~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp--~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~ 289 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAPHEGPVHKLAVEPDSP--KPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAV 289 (559)
T ss_pred eeeeeccccceecceecccccCccceeeecCCCC--CcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEec
Confidence 9987643 3333 2223445556677777654 67999999999999999987543332 23333 5678888
Q ss_pred ecCCC-EEEEEECCCCEEEEECCCCeE------EEEeec-----CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 435 VDNNR-RFVTSSDDKSLRVWEFGIPVV------IKYISE-----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 435 sp~~~-~l~s~s~Dg~I~iwd~~~~~~------~~~~~~-----~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.|.+. .|++++.|-.+++||.+.-.. +..+.. ...-.|++++++.++.-|+++..|-.|++|.-.-+.
T Consensus 290 ~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 290 DPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred CCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 88665 799999999999999864221 122221 234469999999888888888889999999532211
Q ss_pred e----------ecccceecccccccceEEEEE-cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCC
Q 007855 503 Q----------LNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571 (587)
Q Consensus 503 ~----------~~~~~~~~~~~~~~~i~~l~~-spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 571 (587)
- ......++||.+...|..+.| -|...|+++|+.-|.|+||+-++++++..+.+-...|+|+.=||. -
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~-~ 448 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPH-L 448 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCC-C
Confidence 1 222344899988888888876 678899999999999999999999999999987779999999994 4
Q ss_pred CEEEEEECCCcEEEc
Q 007855 572 SKVATCGWDGLIKYW 586 (587)
Q Consensus 572 ~~l~s~g~DG~I~iW 586 (587)
-+|||+|.|.-||||
T Consensus 449 PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 449 PVLASSGIDHDVKIW 463 (559)
T ss_pred chhhccCCccceeee
Confidence 589999999999999
No 157
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=7.6e-19 Score=170.90 Aligned_cols=239 Identities=17% Similarity=0.376 Sum_probs=176.1
Q ss_pred cceEeecccccccceeeeeCCCCcccC---CCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC
Q 007855 252 KSTFHGKEEKDYQGRSWVAPPKDAKAA---NDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN 328 (587)
Q Consensus 252 ~~~~~~~~~~d~~~r~w~~~~~~~~~~---~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~ 328 (587)
.+.+.++=....++..|...+...-.. ....+.-.+++.++.+|.+.=++|+|||-....|+||..-+.|++|...
T Consensus 164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~- 242 (440)
T KOG0302|consen 164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPS- 242 (440)
T ss_pred CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeec-
Confidence 445555555566667776665442111 1122245688999999999999999999645578899989999999984
Q ss_pred CCee---eEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCC---cEEEEeecCCcceEEEEccCCCCCcEEEE
Q 007855 329 SGKC---MRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 329 ~~~~---~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~s 401 (587)
++.- .+.|.+|+..|-+|+||| ....|+|||.||+|+|||++.+ .++.+-.+...+.++.|+... .+|++
T Consensus 243 ~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~---~lLas 319 (440)
T KOG0302|consen 243 TGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRRE---PLLAS 319 (440)
T ss_pred cCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCc---ceeee
Confidence 4432 235678999999999999 4568999999999999999998 455554445556677776543 38999
Q ss_pred EeCCCcEEEEeCCC---CcEEEEEccCCCCeeEEEEecC-CCEEEEEECCCCEEEEECCCCeE-----------------
Q 007855 402 GMSDKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVV----------------- 460 (587)
Q Consensus 402 g~~dg~I~iwD~~t---~~~~~~~~~h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~----------------- 460 (587)
|+.||.++|||+++ ++++..|+.|..+|++|.|+|. ...|++++.|..|.|||+.....
T Consensus 320 G~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPp 399 (440)
T KOG0302|consen 320 GGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPP 399 (440)
T ss_pred cCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCc
Confidence 99999999999985 5678899999999999999985 45788899999999999853211
Q ss_pred -EEEeecCCCcceeEEEEeCC-CCEEEEEECCCeEEEE
Q 007855 461 -IKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIY 496 (587)
Q Consensus 461 -~~~~~~~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iw 496 (587)
+..+ ......+..+.|++. ..+|++.+.|| +.||
T Consensus 400 QLLFV-HqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 400 QLLFV-HQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred eeEEE-ecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 1111 112345777888885 35777777777 4444
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.1e-16 Score=167.28 Aligned_cols=286 Identities=28% Similarity=0.555 Sum_probs=224.0
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe-eeEEEcccCC-ceeeEEE-ecCCC-eEEEEeC-CCeEE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK-CMRTYMGHSK-AVRDISF-CNDGT-KFLTASY-DKNIK 365 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~-~V~~l~f-s~dg~-~l~s~s~-Dg~I~ 365 (587)
.+.+|...|.++.|.+. +..++.++.|+.+.+|+. .... .+..+.++.. .+..+.+ ++++. .++..+. |+.+.
T Consensus 60 ~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 60 LLRGHEDSITSIAFSPD-GELLLSGSSDGTIKLWDL-DNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeeccceEEEEEECCC-CcEEEEecCCCcEEEEEc-CCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 56789999999999999 889999999999999999 4443 6777766443 7888887 77777 5555455 99999
Q ss_pred EEECCC-CcEEEEeecC-CcceEEEEccCCCCCcEEEEEeC-CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-EE
Q 007855 366 YWDTET-GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-RF 441 (587)
Q Consensus 366 vWd~~t-~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~-dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-~l 441 (587)
+|+... ......+..+ .....+.+.+... .+++++. ++.+++|++..+..+..+..|...|.++.|+|++. .+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 214 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGK---LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI 214 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCCCC---EEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence 999998 5666655544 4455688887654 6777775 99999999999889999999999999999999998 55
Q ss_pred EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEE
Q 007855 442 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
++++.|+.|++||...+..+......|.... ...|+|++.++++++.++.+++|++..... ....+.+| ...+.+
T Consensus 215 ~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~--~~~v~~ 289 (466)
T COG2319 215 ASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGH--SSSVLS 289 (466)
T ss_pred EEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EEEEEecC--CccEEE
Confidence 5559999999999887766663333455554 338999998999999999999999986554 11222344 567888
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe--cCCCCEEEEEEcCCCCCEEEEE-ECCCcEEEcC
Q 007855 522 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK--CHEGVCIGCEWHPLEQSKVATC-GWDGLIKYWD 587 (587)
Q Consensus 522 l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~--~h~~~V~~v~~sp~~~~~l~s~-g~DG~I~iWD 587 (587)
+.|+|++..+++++.++.+.+|+..+........ .|...+..+.| +.+...++.+ ..|+.+.+|+
T Consensus 290 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~ 357 (466)
T COG2319 290 VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSF-SPDGSLLVSGGSDDGTIRLWD 357 (466)
T ss_pred EEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEE-CCCCCEEEEeecCCCcEEeee
Confidence 9999999998889989899999999888777776 78888999999 5232455555 6888998885
No 159
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=2.1e-19 Score=183.11 Aligned_cols=261 Identities=19% Similarity=0.319 Sum_probs=191.9
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-------CCeeeEEEcccCCceeeEEEecCCCeEEEEeC
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASY 360 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~ 360 (587)
+-.++..|...|++++|+|. ...|++|+.||+|++|++.. .-+++.+|.+|.++|.|+++.+++.++++|+.
T Consensus 286 ik~tl~s~~d~ir~l~~~~s-ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~ 364 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHPS-EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGI 364 (577)
T ss_pred eeeeeecchhhhhhhhcCCC-CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeecc
Confidence 33488899999999999998 78999999999999999921 23678899999999999999999999999999
Q ss_pred CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 361 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 361 Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
||+|+.|++.... .|++. +|.. .+...+.+|.+.|..+++++...+
T Consensus 365 Dg~I~~w~~p~n~----------------dp~ds----------------~dp~--vl~~~l~Ghtdavw~l~~s~~~~~ 410 (577)
T KOG0642|consen 365 DGTIRCWNLPPNQ----------------DPDDS----------------YDPS--VLSGTLLGHTDAVWLLALSSTKDR 410 (577)
T ss_pred CceeeeeccCCCC----------------Ccccc----------------cCcc--hhccceeccccceeeeeecccccc
Confidence 9999999875211 11111 1111 122356789999999999999999
Q ss_pred EEEEECCCCEEEEECCCCeEEEEeecCCCcc-eeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee-----cccc
Q 007855 441 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-----AGHI 514 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-----~~~~ 514 (587)
|++++.||+|++|+.....+ ..+..+.... -.++.+-... ++....+..+..+++.+.........+ .+..
T Consensus 411 Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~ 487 (577)
T KOG0642|consen 411 LLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPR 487 (577)
T ss_pred eeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccch--hHhhhhhcccccccchhhhhhhheeeccccCCCccc
Confidence 99999999999999876655 2232222222 2333333222 111112233333333222221112222 2222
Q ss_pred cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 515 VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 515 ~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
....+..+.++|.+.+.+++..|+.|+++|..+++++....+|...++++++.| ++-+|++++.||.|++|.
T Consensus 488 ~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~-ng~~l~s~s~d~sv~l~k 559 (577)
T KOG0642|consen 488 RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDP-NGPYLMSGSHDGSVRLWK 559 (577)
T ss_pred ccCccceEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecC-CCceEEeecCCceeehhh
Confidence 234466788999999999999999999999999999999999999999999999 778999999999999994
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=1.5e-19 Score=173.00 Aligned_cols=260 Identities=18% Similarity=0.346 Sum_probs=188.7
Q ss_pred eeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc---ccCCc
Q 007855 266 RSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM---GHSKA 342 (587)
Q Consensus 266 r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~ 342 (587)
.-+++....+..+...++...++...+.||...|+.|.|+|...++|++||.|..|+||++ .+..|+..+- +|.+.
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI-~~~~Cv~VfGG~egHrde 183 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNI-QTDVCVAVFGGVEGHRDE 183 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEec-cCCeEEEEecccccccCc
Confidence 4445555544444555667778889999999999999999998899999999999999999 7888888764 69999
Q ss_pred eeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE
Q 007855 343 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 422 (587)
Q Consensus 343 V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~ 422 (587)
|.++.|+.+|.+|++|+.|.+|++|++...+....+... ..+.++..... |- .-.+.+.+.. +-
T Consensus 184 VLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~~t~~p-fp----t~~~~fp~fs------t~ 247 (385)
T KOG1034|consen 184 VLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPNKTTRP-FP----TPKTHFPDFS------TT 247 (385)
T ss_pred EEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCCCccCc-CC----cccccccccc------cc
Confidence 999999999999999999999999999865433322211 22222221100 00 0111222221 22
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-CeE-------------EEEeecCCCcceeE--EEEeCCCCEEEE
Q 007855 423 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-PVV-------------IKYISEPHMHSMPS--ISLHPNTNWLAA 486 (587)
Q Consensus 423 ~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~-------------~~~~~~~~~~~i~~--i~~sp~g~~l~~ 486 (587)
.-|...|-|+.|. |+++++=|-++.|..|.... ... +..+. -.+..|.- .+|.|-+++||+
T Consensus 248 diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~~~c~iWfirf~~d~~~~~la~ 324 (385)
T KOG1034|consen 248 DIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-YPMCDIWFIRFAFDPWQKMLAL 324 (385)
T ss_pred ccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-cCccceEEEEEeecHHHHHHhh
Confidence 3588999999997 67899999999999998721 111 11111 12223333 456677899999
Q ss_pred EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 487 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
|...|.|.+||++..... ....+..+.....|...+||.||.+|+..+.|+.|.-||..
T Consensus 325 gnq~g~v~vwdL~~~ep~-~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 325 GNQSGKVYVWDLDNNEPP-KCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred ccCCCcEEEEECCCCCCc-cCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999999876554 33444445556778899999999999999999999999964
No 161
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.81 E-value=1.2e-19 Score=198.48 Aligned_cols=279 Identities=19% Similarity=0.328 Sum_probs=207.6
Q ss_pred EEEEccCCCcEEEEE----------eCCCeEEEEecCCCC-----eeeEEEcccCCceeeEEEecCCCe----EEEEeCC
Q 007855 301 AIRFFPKYGHLILSA----------GMDTKVKIWDVFNSG-----KCMRTYMGHSKAVRDISFCNDGTK----FLTASYD 361 (587)
Q Consensus 301 ~l~~sp~~g~~L~sg----------s~Dg~I~iWd~~~~~-----~~~~~~~~h~~~V~~l~fs~dg~~----l~s~s~D 361 (587)
.++|+|.+..+|++| +.+.++-||.+.... +.+..+ .-....+.++|.+.|.. |+.|..|
T Consensus 11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIaGG~ed 89 (1049)
T KOG0307|consen 11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIAGGLED 89 (1049)
T ss_pred eEEecCCCchhhHHHhhhhccccccccccccceeeecccCccccccccccc-cccccceeeeecccCCCccceeeccccC
Confidence 467888854466665 335666777662111 122222 23456789999987665 8888999
Q ss_pred CeEEEEECCC---Cc---EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE--ccCCCCeeEE
Q 007855 362 KNIKYWDTET---GQ---VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTI 432 (587)
Q Consensus 362 g~I~vWd~~t---~~---~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~--~~h~~~I~~i 432 (587)
|.|.+||... +. .+.++. +...+..+.|++ ..+++|++|+.+|.|.|||++..+.-..+ ....+.|.+|
T Consensus 90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~--~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l 167 (1049)
T KOG0307|consen 90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNP--FQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL 167 (1049)
T ss_pred CceEEecchhhccCcchHHHhhhcccCCceeeeeccc--cCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence 9999999865 22 222232 233344566666 45589999999999999999875544333 2256789999
Q ss_pred EEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCCC-cceeEEEEeCCC-CEEEEEECC---CeEEEEEcCCceeecc
Q 007855 433 TFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNT-NWLAAQSLD---NQILIYSTRERFQLNK 506 (587)
Q Consensus 433 ~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~~i~~i~~sp~g-~~l~~~s~d---g~I~iwd~~~~~~~~~ 506 (587)
+|+.. ...|++++.+|.+.|||++..+.+..+..... ..+..+.|||+. ..|++++.| -.|.+||++... ..
T Consensus 168 sWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP 245 (1049)
T KOG0307|consen 168 SWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SP 245 (1049)
T ss_pred ccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cc
Confidence 99864 34688889999999999999887776654333 347889999986 456666655 469999987533 34
Q ss_pred cceecccccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 507 KKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 507 ~~~~~~~~~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.+.+.+| ...|.++.|++.+ ++|++++.|++|.+|+.++++.+..+......+..+.|+|.+..++++++.||.|.|
T Consensus 246 ~k~~~~H--~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I 323 (1049)
T KOG0307|consen 246 LKILEGH--QRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISI 323 (1049)
T ss_pred hhhhccc--ccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceee
Confidence 5666777 4568889999966 899999999999999999999999999888899999999988889999999999998
Q ss_pred c
Q 007855 586 W 586 (587)
Q Consensus 586 W 586 (587)
+
T Consensus 324 ~ 324 (1049)
T KOG0307|consen 324 Y 324 (1049)
T ss_pred e
Confidence 7
No 162
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=4.6e-18 Score=183.46 Aligned_cols=281 Identities=17% Similarity=0.281 Sum_probs=201.3
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc---CCceeeEEEec--CCCeEEEEeCCCeEEEEECC-
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH---SKAVRDISFCN--DGTKFLTASYDKNIKYWDTE- 370 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fs~--dg~~l~s~s~Dg~I~vWd~~- 370 (587)
..-..+.|+|- ...++++...-.|+|||. ..++++..|..+ ...|+.+.+-+ |..++++|+.||.|+||+--
T Consensus 1065 ~~pk~~~~hpf-~p~i~~ad~r~~i~vwd~-e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~ 1142 (1387)
T KOG1517|consen 1065 QPPKTLKFHPF-EPQIAAADDRERIRVWDW-EKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYA 1142 (1387)
T ss_pred CCCceeeecCC-CceeEEcCCcceEEEEec-ccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccc
Confidence 34556678887 778888887889999999 677777777644 45699999877 56789999999999999642
Q ss_pred ----CCcEEEEeec--------CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-CCCCeeEEEEe-c
Q 007855 371 ----TGQVIRTFST--------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFV-D 436 (587)
Q Consensus 371 ----t~~~i~~~~~--------~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-h~~~I~~i~~s-p 436 (587)
..+.+..+.. .....++.|.. ..+.++++| .-..|+|||......+..+.. ....|+++.-+ .
T Consensus 1143 ~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ--~~G~Ll~tG-d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~ 1219 (1387)
T KOG1517|consen 1143 DKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQ--QSGHLLVTG-DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV 1219 (1387)
T ss_pred cccCCceeEEeeccccccCccCCCCCeeeehhh--hCCeEEecC-CeeEEEEEecccceeEeecccCCCccceeeccccc
Confidence 2233333321 12223444444 344445444 478999999998877776643 34456666654 3
Q ss_pred CCCEEEEEECCCCEEEEECCCCeE--EEEeecCCCcc--eeEEEEeCCCCE-EEEEECCCeEEEEEcCCceeecccceec
Q 007855 437 NNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPHMHS--MPSISLHPNTNW-LAAQSLDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~--i~~i~~sp~g~~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
.|+.|++|..||+|++||.+.... .......|... |..+.+.++|-- |++|+.+|.|++||++........ ...
T Consensus 1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~-~iv 1298 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFL-TIV 1298 (1387)
T ss_pred CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccc-eee
Confidence 579999999999999999987543 33333456666 999999987754 999999999999999875332222 222
Q ss_pred cccccc-ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-------CCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 512 GHIVAG-YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------EGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 512 ~~~~~~-~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-------~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
.|...+ ..+++..+++...+|+|+. +.|.||++. |+.+..++.+ .+.+.|++||| -.-+|++|..|.+|
T Consensus 1299 ~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V 1375 (1387)
T KOG1517|consen 1299 AHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTV 1375 (1387)
T ss_pred eccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceE
Confidence 222123 4788999999999999999 999999974 4444444332 34689999999 56688899999999
Q ss_pred EEc
Q 007855 584 KYW 586 (587)
Q Consensus 584 ~iW 586 (587)
.||
T Consensus 1376 ~iY 1378 (1387)
T KOG1517|consen 1376 SIY 1378 (1387)
T ss_pred EEe
Confidence 987
No 163
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=1.8e-18 Score=173.17 Aligned_cols=259 Identities=13% Similarity=0.150 Sum_probs=197.9
Q ss_pred CCeEEEEecCCCCeeeEEEcccC--CceeeEEEecCCCeEEE--EeCCCeEEEEECCCC--c-EEEEeecCCcceEEEEc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHS--KAVRDISFCNDGTKFLT--ASYDKNIKYWDTETG--Q-VIRTFSTGKIPYVVKLN 390 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~--~~V~~l~fs~dg~~l~s--~s~Dg~I~vWd~~t~--~-~i~~~~~~~~~~~~~~~ 390 (587)
..+++|||+ ........+..|. ..+.+++|+.... |++ .+.|..|++|.-... + ++.....+....|+.+.
T Consensus 11 gd~~kl~D~-s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~ 88 (673)
T KOG4378|consen 11 GDKTKLSDF-SDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACA 88 (673)
T ss_pred CCceEEeec-ccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhh
Confidence 347999998 4444333343332 3488999987653 444 456788999975433 1 22222233444455554
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
... .++++|+..+.|.|||++...+.+.+..|...|+++.+.-...+|++++..|.|.|..+.++.....+..+...
T Consensus 89 s~S---~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgq 165 (673)
T KOG4378|consen 89 SQS---LYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQ 165 (673)
T ss_pred hcc---eeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCC
Confidence 433 68999999999999999988888889999999999999999999999999999999999998887777777777
Q ss_pred ceeEEEEeCCCCE-EEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCC
Q 007855 471 SMPSISLHPNTNW-LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 471 ~i~~i~~sp~g~~-l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t~ 548 (587)
.+.-+.++|..++ |.+++.+|.|.+||+....+.... ...| ..+...|||+|.. .+|++.+.|.+|.+||..+.
T Consensus 166 svRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~--~~~H--sAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 166 SVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHA--SEAH--SAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred eEEEeecccccceeeEeeccCCeEEEEeccCCCcccch--hhhc--cCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 8889999998765 566788999999999876544222 2233 4556679999954 56788999999999999987
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 549 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 549 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+...++. ...+...++|.+ ++.+|+.|...|.|..||
T Consensus 242 ~s~~~l~-y~~Plstvaf~~-~G~~L~aG~s~G~~i~YD 278 (673)
T KOG4378|consen 242 ASTDRLT-YSHPLSTVAFSE-CGTYLCAGNSKGELIAYD 278 (673)
T ss_pred cccceee-ecCCcceeeecC-CceEEEeecCCceEEEEe
Confidence 7777665 566789999999 888999999999999987
No 164
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.80 E-value=3.8e-18 Score=175.04 Aligned_cols=152 Identities=18% Similarity=0.263 Sum_probs=111.2
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR 334 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~ 334 (587)
+++++++|..+++|..+-.-...... .-..+.+-.-.|-|+.|+|....+|+++. .|+++|||+ .+++.+.
T Consensus 94 LLAT~S~D~~VKiW~lp~g~~q~LSa-------pe~~~g~~~~~vE~l~fHpTaDgil~s~a-~g~v~i~D~-stqk~~~ 164 (1012)
T KOG1445|consen 94 LLATCSRDEPVKIWKLPRGHSQKLSA-------PEIDVGGGNVIVECLRFHPTADGILASGA-HGSVYITDI-STQKTAV 164 (1012)
T ss_pred hhhcccCCCeeEEEecCCCcccccCC-------cceeecCCceEEEEeecccCcCceEEecc-CceEEEEEc-ccCceee
Confidence 45789999999999888322111100 01123334457999999998666666655 699999999 7899999
Q ss_pred EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC-CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC---CcEEE
Q 007855 335 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---KKIVQ 410 (587)
Q Consensus 335 ~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g~I~i 410 (587)
.+.+|...|.++.|+.||.+|++++.|+.|+|||.+. ++.++....+....-..+.+.+...+++-+|... ..|++
T Consensus 165 el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~ 244 (1012)
T KOG1445|consen 165 ELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRA 244 (1012)
T ss_pred cccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeee
Confidence 9999999999999999999999999999999999975 4667766655554444444444444556565543 46788
Q ss_pred EeCCC
Q 007855 411 WDMNT 415 (587)
Q Consensus 411 wD~~t 415 (587)
||.+.
T Consensus 245 ~Dtr~ 249 (1012)
T KOG1445|consen 245 YDTRK 249 (1012)
T ss_pred eeccc
Confidence 99875
No 165
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=1.3e-17 Score=180.10 Aligned_cols=249 Identities=18% Similarity=0.340 Sum_probs=190.4
Q ss_pred CCeEEEEEcc-CCCcEEEEEeCCCeEEEEecCCCC----eeeEEEcc-------cCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 297 KGVSAIRFFP-KYGHLILSAGMDTKVKIWDVFNSG----KCMRTYMG-------HSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 297 ~~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~-------h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
..|+.|.+-. ++..+|++|+.||.|+||+-+... +++..+.+ -.+.=.-+.|.....+|++++.-+.|
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~I 1189 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSI 1189 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEE
Confidence 4688888765 346799999999999999876553 33333322 11112345677766677777778999
Q ss_pred EEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC---cEEEEEccCCCC--eeEEEEecCCC
Q 007855 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGA--VNTITFVDNNR 439 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~---~~~~~~~~h~~~--I~~i~~sp~~~ 439 (587)
+|||....+++..+..+....+.+++.+...++++++|..||.|++||.+.. ..+..++.|... |..+.+.++|-
T Consensus 1190 RIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~ 1269 (1387)
T KOG1517|consen 1190 RIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGL 1269 (1387)
T ss_pred EEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCC
Confidence 9999999999999988877777888888778899999999999999999865 357788889888 99999998765
Q ss_pred E-EEEEECCCCEEEEECCCCeEEEEee--cCC--CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce---ec
Q 007855 440 R-FVTSSDDKSLRVWEFGIPVVIKYIS--EPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR---FA 511 (587)
Q Consensus 440 ~-l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~--~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~---~~ 511 (587)
. |++|+.+|.|++||++.......+. ... .+.++++..|+....+|+|+. +.|.||++... .+..++. |.
T Consensus 1270 ~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~-~l~~~k~n~~F~ 1347 (1387)
T KOG1517|consen 1270 GELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGE-QLNIIKYNPGFM 1347 (1387)
T ss_pred cceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChh-hhcccccCcccc
Confidence 5 9999999999999999852222221 111 235999999999999999998 99999998653 3333322 22
Q ss_pred ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 512 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
+.. .+.+.+++|+|.--+|++|+.|..|.||.....
T Consensus 1348 ~q~-~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1348 GQR-IGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred cCc-CCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 222 345678999999999999999999999987654
No 166
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=7.7e-18 Score=159.03 Aligned_cols=209 Identities=17% Similarity=0.281 Sum_probs=161.5
Q ss_pred cccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCc------E----EEEee----cCC--cceEEEEccCCCCCcEE
Q 007855 337 MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQ------V----IRTFS----TGK--IPYVVKLNPDDDKQNIL 399 (587)
Q Consensus 337 ~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~------~----i~~~~----~~~--~~~~~~~~~~~~~~~~l 399 (587)
..|.+.|+++...+ .|+++++|+.||.|.|||++... . +..+. .++ .+..+.|.|.+. .+|
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~Dt--GmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDT--GMF 117 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecC--cee
Confidence 35889999999988 79999999999999999997543 1 11111 111 233456666554 589
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC---CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEE
Q 007855 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN---NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSIS 476 (587)
Q Consensus 400 ~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~---~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~ 476 (587)
.+++.|.++++||.++.+....|+ ..+.|.+-+++|- ..++++|..+-.|++.|+..+.....+. +|...|.++.
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~ 195 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVE 195 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEE
Confidence 999999999999999998887775 5577888788773 3468888889999999999998887775 6999999999
Q ss_pred EeCCCCE-EEEEECCCeEEEEEcCCc-eeeccc--------ceec-ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 477 LHPNTNW-LAAQSLDNQILIYSTRER-FQLNKK--------KRFA-GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 477 ~sp~g~~-l~~~s~dg~I~iwd~~~~-~~~~~~--------~~~~-~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
|+|...+ |++|+.||.|++||++.. .++..+ ...+ .....+.+..++|+.+|.++++.+.|.++++|+.
T Consensus 196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 196 WSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNM 275 (397)
T ss_pred eccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeec
Confidence 9997765 788999999999998753 111111 1111 1223677889999999999999999999999998
Q ss_pred CCCe
Q 007855 546 KSCK 549 (587)
Q Consensus 546 ~t~~ 549 (587)
.+|+
T Consensus 276 ~~G~ 279 (397)
T KOG4283|consen 276 ESGR 279 (397)
T ss_pred ccCc
Confidence 7764
No 167
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.80 E-value=3e-18 Score=176.63 Aligned_cols=253 Identities=18% Similarity=0.284 Sum_probs=178.3
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEE--EcccCCceeeEEEec-CCCeEEEEeCCCeE
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT--YMGHSKAVRDISFCN-DGTKFLTASYDKNI 364 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~--~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I 364 (587)
.+..+..|...|..+.|.|. ..+|++++.|.++++||+ +...++.. +.+|...|.+++|.+ +...|++|+.||.|
T Consensus 92 ~lk~~~aH~nAifDl~wapg-e~~lVsasGDsT~r~Wdv-k~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~i 169 (720)
T KOG0321|consen 92 QLKKPLAHKNAIFDLKWAPG-ESLLVSASGDSTIRPWDV-KTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEI 169 (720)
T ss_pred hhcccccccceeEeeccCCC-ceeEEEccCCceeeeeee-ccceeecceeecccccccchhhhccCCCcceeeccCCCcE
Confidence 35677889999999999995 889999999999999999 67777766 899999999999999 56688999999999
Q ss_pred EEEECCCCc--------------------EEEEe----e---c-CCcce-EEEEccCCCCCcEEEEEeC-CCcEEEEeCC
Q 007855 365 KYWDTETGQ--------------------VIRTF----S---T-GKIPY-VVKLNPDDDKQNILLAGMS-DKKIVQWDMN 414 (587)
Q Consensus 365 ~vWd~~t~~--------------------~i~~~----~---~-~~~~~-~~~~~~~~~~~~~l~sg~~-dg~I~iwD~~ 414 (587)
.|||++-.. ..... . . ...+. .+......+. +.|++++. |+.|++||++
T Consensus 170 llWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~~iKVWDLR 248 (720)
T KOG0321|consen 170 LLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADSTIKVWDLR 248 (720)
T ss_pred EEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCcceEEEeec
Confidence 999986332 00000 0 0 00111 1111122122 45666655 9999999999
Q ss_pred CCcEEEE--------EccC---CCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE--EEEeecCC-CcceeEEEEeCC
Q 007855 415 TKEITQE--------YDQH---LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPH-MHSMPSISLHPN 480 (587)
Q Consensus 415 t~~~~~~--------~~~h---~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~-~~~i~~i~~sp~ 480 (587)
....... +..| .-.+.++.....|.+|++.+.|++|++|++..... ...+.... ......-..+|+
T Consensus 249 k~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd 328 (720)
T KOG0321|consen 249 KNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPD 328 (720)
T ss_pred ccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCC
Confidence 7643322 2223 34577888888889998888899999999976432 11111101 111223356899
Q ss_pred CCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCC
Q 007855 481 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 481 g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dg~~L~sgs~dG~I~vwd~~t~ 548 (587)
+.+|++|+.|...++|.+..... ....+.|| ...|++++|.| .+. +++++.|-.++||++..+
T Consensus 329 ~~~l~SgSsd~~ayiw~vs~~e~--~~~~l~Gh--t~eVt~V~w~pS~~t~-v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 329 DCSLLSGSSDEQAYIWVVSSPEA--PPALLLGH--TREVTTVRWLPSATTP-VATCSDDFRVKIWRLSNG 393 (720)
T ss_pred CceEeccCCCcceeeeeecCccC--ChhhhhCc--ceEEEEEeeccccCCC-ceeeccCcceEEEeccCc
Confidence 99999999999999999876433 34556677 45577788876 444 455599999999998553
No 168
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.7e-17 Score=163.17 Aligned_cols=280 Identities=20% Similarity=0.322 Sum_probs=199.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC---C-----eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS---G-----KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~-----~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
..+|..+.|.++....|+||+.|..|+||-+... + +.+..+..|..+|+++.|+|+|..|+||+.+|.|.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 4589999999986669999999999999987211 1 3445677899999999999999999999999999999
Q ss_pred ECC--------C-----C---cEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCee
Q 007855 368 DTE--------T-----G---QVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 430 (587)
Q Consensus 368 d~~--------t-----~---~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~ 430 (587)
-.. + . .....+. +...++-++|.+++ +++++|+.|..+++||+..|.....+..|..-+.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~---~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq 169 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS---NFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ 169 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC---ceeeeeeccceEEEEEeccceeEeeccccccccc
Confidence 765 2 1 1111222 23456677777754 6899999999999999999999999999999999
Q ss_pred EEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec---------C---------C----CcceeEEEEeCCCCEEEEEE
Q 007855 431 TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE---------P---------H----MHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---------~---------~----~~~i~~i~~sp~g~~l~~~s 488 (587)
.++|.|-++++++-+.|...+++.+.....+..... . | ..-...++|+|+|.+|++..
T Consensus 170 gvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa 249 (434)
T KOG1009|consen 170 GVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA 249 (434)
T ss_pred eeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence 999999999999999999888887765443332210 0 1 11245578999999988764
Q ss_pred C----C-----CeEEEEEcCCceeecccceecccccccceEEEEEcC------------------CCCEEEEEcCCCcEE
Q 007855 489 L----D-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------------------DGRFVMSGDGEGKCW 541 (587)
Q Consensus 489 ~----d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------------------dg~~L~sgs~dG~I~ 541 (587)
. . +..++|+-....+ +...+.+. ...+..+.|+| -+..++.++ ...|+
T Consensus 250 g~~~~g~~~~~n~tYvfsrk~l~r--P~~~lp~~--~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svy 324 (434)
T KOG1009|consen 250 GLFKVGGGVFRNTSYVFSRKDLKR--PAARLPSP--KKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVY 324 (434)
T ss_pred ceeeeCCceeeceeEeeccccccC--ceeecCCC--CcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEE
Confidence 2 1 2234444322111 11111111 11222233333 222334444 55899
Q ss_pred EEeCCCCeeEEEEe-cCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 542 FWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 542 vwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
|||.++..++.... -|-..|+.++|++ ++..|+..+.||...
T Consensus 325 vydtq~~~P~~~v~nihy~~iTDiaws~-dg~~l~vSS~DGyCS 367 (434)
T KOG1009|consen 325 VYDTQTLEPLAVVDNIHYSAITDIAWSD-DGSVLLVSSTDGFCS 367 (434)
T ss_pred EeccccccceEEEeeeeeeeecceeecC-CCcEEEEeccCCceE
Confidence 99999988877664 4888999999999 788999999999754
No 169
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5e-17 Score=149.88 Aligned_cols=272 Identities=15% Similarity=0.244 Sum_probs=189.9
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCC---------CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
.|.+-+|+|. +++|+.|+.+|+|.+..+.. ....+..+++|.++|..++|. ..+|++|+ ||.|+=|.
T Consensus 12 tvf~qa~sp~-~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPS-KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWE 87 (325)
T ss_pred HHHHHhhCCc-ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEee
Confidence 4667789999 99999999999999998831 224556678999999999998 34777776 59999997
Q ss_pred CCCCcE------EEEeec------CCcc--eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEE
Q 007855 369 TETGQV------IRTFST------GKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF 434 (587)
Q Consensus 369 ~~t~~~------i~~~~~------~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~ 434 (587)
...... +..... -..+ ..+.+.| ..+.+| .++.|+.++.||+.+|++.+++++|.+.|.++..
T Consensus 88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP--~enSi~-~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDP--SENSIL-FAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred ehhhhhhccchhhhhhcCccccCcccCCccceeEecc--CCCcEE-EecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 753321 111111 1112 2334444 333444 4448999999999999999999999999999999
Q ss_pred ecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcc-------eeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS-------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 507 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-------i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~ 507 (587)
-.....+++|+.||++|+||.++.+.++.+....... -.-.++.-+..+|++|+ ...+.+|.++.......+
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vf 243 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVF 243 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEE
Confidence 7677789999999999999999999888775321111 11134445677888876 566999999876554322
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.++ ..+..+.|- ...+++++....|.-|.+ +|.+-..+......+++..|+-.--.+|-.+|....+.|+
T Consensus 244 -pip-----a~v~~v~F~--~d~vl~~G~g~~v~~~~l-~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 244 -PIP-----ARVHLVDFV--DDCVLIGGEGNHVQSYTL-NGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred -ecc-----cceeEeeee--cceEEEeccccceeeeee-ccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 233 334457774 446778887778988886 4555555665555677777776333455556666666653
No 170
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=5.8e-19 Score=193.10 Aligned_cols=248 Identities=17% Similarity=0.278 Sum_probs=193.1
Q ss_pred CCeEEEEEccCCCc---EEEEEeCCCeEEEEecCC-----CCeeeEEEcccCCceeeEEEecC-CCeEEEEeCCCeEEEE
Q 007855 297 KGVSAIRFFPKYGH---LILSAGMDTKVKIWDVFN-----SGKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYW 367 (587)
Q Consensus 297 ~~V~~l~~sp~~g~---~L~sgs~Dg~I~iWd~~~-----~~~~~~~~~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vW 367 (587)
...+.|+|.+.+.+ +|+.|..||.|.+||... ....+.++..|.+.|..+.|++. +++|++|+.||.|.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW 144 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence 34788999987444 599999999999999843 12456778889999999999995 5599999999999999
Q ss_pred ECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC--CeeEEEEecCCC-EEEE
Q 007855 368 DTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDNNR-RFVT 443 (587)
Q Consensus 368 d~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~--~I~~i~~sp~~~-~l~s 443 (587)
|+..-+.-..+... ....+.++.++...+++|++++.+|.+.|||++..+.+..+..+.+ .+..|.|+|+.. .+++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~ 224 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV 224 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence 99875544333211 1222344444446678999999999999999999988777765554 478899999764 4666
Q ss_pred EECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceeecccceecccccccce
Q 007855 444 SSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 444 ~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i 519 (587)
++.|. .|.+||+|.......+...|...|.++.|++.+ .+|++++.|+.|.+|+..++..+..+.. ...++
T Consensus 225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~-----~~nW~ 299 (1049)
T KOG0307|consen 225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA-----QGNWC 299 (1049)
T ss_pred ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC-----CCcce
Confidence 66654 599999987655544556799999999999976 8999999999999999999876644333 25678
Q ss_pred EEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe
Q 007855 520 CQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 520 ~~l~~spdg~-~L~sgs~dG~I~vwd~~t~~ 549 (587)
..+.|+|... .+++.+-+|.|.|+.+.++.
T Consensus 300 fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 300 FDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 8899999766 77888899999999987654
No 171
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=1.1e-17 Score=169.45 Aligned_cols=209 Identities=20% Similarity=0.361 Sum_probs=151.0
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEE-cccCCceeeEEEec--CCCeEEEEeCCCeEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY-MGHSKAVRDISFCN--DGTKFLTASYDKNIK 365 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~ 365 (587)
-..|.||++.|+||.|+.+ |.+|+|||.|-.+.|||.. ..+++..+ .+|...|.++.|-| +.+.+++|+.|..|+
T Consensus 43 E~eL~GH~GCVN~LeWn~d-G~lL~SGSDD~r~ivWd~~-~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~ 120 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNAD-GELLASGSDDTRLIVWDPF-EYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK 120 (758)
T ss_pred hhhhccccceecceeecCC-CCEEeecCCcceEEeecch-hcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence 4578899999999999999 9999999999999999995 55555544 58999999999999 567899999999999
Q ss_pred EEECCCCc----------EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE----------EEEEccC
Q 007855 366 YWDTETGQ----------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI----------TQEYDQH 425 (587)
Q Consensus 366 vWd~~t~~----------~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~----------~~~~~~h 425 (587)
|+|+...+ ....+..+ ...+-.+.+.+...+.|.+++.||+|+.+|++.... +..+...
T Consensus 121 lfdl~~~~~~~~d~~~~~~~~~~~ch-t~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 121 LFDLDSSKEGGMDHGMEETTRCWSCH-TDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEecccccccccccCccchhhhhhhh-hhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 99998522 11122111 111222233334458999999999999999986321 1112223
Q ss_pred CCCeeEEEEecCC-CEEEEEECCCCEEEEECCCC------------------eEEEEeecCCC-----------cceeEE
Q 007855 426 LGAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIP------------------VVIKYISEPHM-----------HSMPSI 475 (587)
Q Consensus 426 ~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~------------------~~~~~~~~~~~-----------~~i~~i 475 (587)
.-...|++++|.. .+|++|+.|-..++||.+.. .++.++...|. ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 3456789999854 57899999999999995321 12333332222 125667
Q ss_pred EEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 476 SLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 476 ~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
+|+|+|.-|++.-..-.|++||+..
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~ 304 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNE 304 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecC
Confidence 8999998888877777899998754
No 172
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=4e-17 Score=155.60 Aligned_cols=263 Identities=14% Similarity=0.213 Sum_probs=192.2
Q ss_pred ccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC-CCe
Q 007855 276 KAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND-GTK 354 (587)
Q Consensus 276 ~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d-g~~ 354 (587)
+.+..+.+...++-+.|.+|..+|++|+||++ |+.|+|+|.|..|.+||+ ..+.+++.+. ...+|+.+.|+|. .+.
T Consensus 45 G~vvI~D~~T~~iar~lsaH~~pi~sl~WS~d-gr~LltsS~D~si~lwDl-~~gs~l~rir-f~spv~~~q~hp~k~n~ 121 (405)
T KOG1273|consen 45 GRVVIYDFDTFRIARMLSAHVRPITSLCWSRD-GRKLLTSSRDWSIKLWDL-LKGSPLKRIR-FDSPVWGAQWHPRKRNK 121 (405)
T ss_pred CcEEEEEccccchhhhhhccccceeEEEecCC-CCEeeeecCCceeEEEec-cCCCceeEEE-ccCccceeeeccccCCe
Confidence 44445677788888999999999999999999 999999999999999999 6777887775 5678999999994 344
Q ss_pred EEEEeCCCeEEEEECCCCc--EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-CCeeE
Q 007855 355 FLTASYDKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNT 431 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-~~I~~ 431 (587)
++++-.+..-.+-++..+. ++..-..+....+.........+.++++|...|.+.++|..+.+++..++... ..|..
T Consensus 122 ~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~ 201 (405)
T KOG1273|consen 122 CVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQ 201 (405)
T ss_pred EEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeE
Confidence 4444444445555554422 11111111111222212234567899999999999999999999998887666 78999
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCCCeEE---------EEee-cCCCcceeEEEEeCCCCEEEEEEC-CCeEEEEEcCC
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGIPVVI---------KYIS-EPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRE 500 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~---------~~~~-~~~~~~i~~i~~sp~g~~l~~~s~-dg~I~iwd~~~ 500 (587)
|.++..|+.|++-+.|+.||.|+++.-... ..+. ......-.+++|+.+|.|+++++. ...++||....
T Consensus 202 I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~ 281 (405)
T KOG1273|consen 202 IIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSI 281 (405)
T ss_pred EEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCC
Confidence 999999999999999999999998621111 1110 012334568899999999988864 46799999888
Q ss_pred ceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
+..+..+...+| .....+.|+|-...|++- ..|.|++|...
T Consensus 282 GsLVKILhG~kg----E~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 282 GSLVKILHGTKG----EELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred cceeeeecCCch----hheeecccccceeeeeec-cCCceEEEEee
Confidence 876644443332 234568899988888887 78899999864
No 173
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.77 E-value=1.7e-17 Score=162.37 Aligned_cols=208 Identities=22% Similarity=0.329 Sum_probs=167.1
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC------eeeEEEcccCCceeeEEEec-CCCeEEEEeCCCe
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG------KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKN 363 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~ 363 (587)
.+.||+++|..++|+|.+.+.|||||.|.+|.||.+...+ +++..+.+|...|--++|+| -.+.|++++.|.+
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 4679999999999999989999999999999999994433 55778899999999999999 4578999999999
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC-eeEEEEecCCCEEE
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDNNRRFV 442 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~-I~~i~~sp~~~~l~ 442 (587)
|.+|++.+|+.+.++.+...++.+.|+.++ .+|++.+.|.+|+|||.++++++.+-.+|.+. -..+.|..++..+.
T Consensus 156 v~iWnv~tgeali~l~hpd~i~S~sfn~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~t 232 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLDHPDMVYSMSFNRDG---SLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFT 232 (472)
T ss_pred EEEEeccCCceeeecCCCCeEEEEEeccCC---ceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceee
Confidence 999999999999998877778888888765 58999999999999999999999998888764 45566777888444
Q ss_pred EEE---CCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEE-EECCCeEEEEEcCCc
Q 007855 443 TSS---DDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAA-QSLDNQILIYSTRER 501 (587)
Q Consensus 443 s~s---~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~-~s~dg~I~iwd~~~~ 501 (587)
+|- .+..+-+||..... ++........+.|.---+.++.+.+.. |-.|+.|+.|.+...
T Consensus 233 TGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d 296 (472)
T KOG0303|consen 233 TGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNE 296 (472)
T ss_pred eccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCC
Confidence 442 46789999975432 222222234556666677888777654 557899999988654
No 174
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.77 E-value=5.1e-17 Score=159.82 Aligned_cols=283 Identities=17% Similarity=0.292 Sum_probs=195.9
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC------
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN------ 328 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------ 328 (587)
+.+++..|+.+|.|.+.....+... ..-+.+.+|..|...|++|+|+|+ |.+|+||+.+|.|.||-...
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~----~~V~y~s~Ls~H~~aVN~vRf~p~-gelLASg~D~g~v~lWk~~~~~~~~~ 102 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGD----MKVEYLSSLSRHTRAVNVVRFSPD-GELLASGGDGGEVFLWKQGDVRIFDA 102 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCc----eeEEEeecccCCcceeEEEEEcCC-cCeeeecCCCceEEEEEecCcCCccc
Confidence 6788999999999988776654322 233566789999999999999999 99999999999999998630
Q ss_pred -C--------CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcE
Q 007855 329 -S--------GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNI 398 (587)
Q Consensus 329 -~--------~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~ 398 (587)
+ ....+.+.+|...|..++|+|++.++++++.|..+++||+..|+.+..+.. .+.+..++|.|.+ .+
T Consensus 103 d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~---qy 179 (434)
T KOG1009|consen 103 DTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLN---QY 179 (434)
T ss_pred cchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccceeecchhh---hh
Confidence 1 234567789999999999999999999999999999999999999888754 3455567777654 35
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEc--------c-----------CC----CCeeEEEEecCCCEEEEEEC----CCC--
Q 007855 399 LLAGMSDKKIVQWDMNTKEITQEYD--------Q-----------HL----GAVNTITFVDNNRRFVTSSD----DKS-- 449 (587)
Q Consensus 399 l~sg~~dg~I~iwD~~t~~~~~~~~--------~-----------h~----~~I~~i~~sp~~~~l~s~s~----Dg~-- 449 (587)
+++-+.|...+.+.+.....++... . |. .-...++|+|+|..+++... .+.
T Consensus 180 v~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~ 259 (434)
T KOG1009|consen 180 VASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVF 259 (434)
T ss_pred hhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCcee
Confidence 6666777766666655433222111 0 11 12345788899988887532 222
Q ss_pred ---EEEEECCC-CeEEEEeecCCCcceeEEEEeC------------------CCCEEEEEECCCeEEEEEcCCceeeccc
Q 007855 450 ---LRVWEFGI-PVVIKYISEPHMHSMPSISLHP------------------NTNWLAAQSLDNQILIYSTRERFQLNKK 507 (587)
Q Consensus 450 ---I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp------------------~g~~l~~~s~dg~I~iwd~~~~~~~~~~ 507 (587)
.++|+-.. .++...+.. ...+...+.++| .+-.+++++ .+.|++||..+..++...
T Consensus 260 ~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 260 RNTSYVFSRKDLKRPAARLPS-PKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eceeEeeccccccCceeecCC-CCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEE
Confidence 34444321 122222211 122233333333 233445554 567999998876555433
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
.. ++-..+++++|++||.+|+..+.||...+.-+...++-
T Consensus 338 ~n----ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 338 DN----IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ee----eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 33 33567889999999999999999999888877665543
No 175
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.77 E-value=2.1e-17 Score=164.63 Aligned_cols=253 Identities=17% Similarity=0.198 Sum_probs=186.6
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
-+..+..|..+|++|.|+|.+...+++.|.||+|++-|+ +... .+..+..-...+.++.|+.+...++.+..=|.+.
T Consensus 226 ~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~-~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~ 304 (498)
T KOG4328|consen 226 GVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDF-EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFN 304 (498)
T ss_pred ceEEeccCCccccceEecCCChhheeeeccCceeeeeee-cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceE
Confidence 456788999999999999998999999999999999999 4432 2223333456678888998888888887778999
Q ss_pred EEECCCCcE-EEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc----EEEEEccCCCCeeEEEEecCCC
Q 007855 366 YWDTETGQV-IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNTITFVDNNR 439 (587)
Q Consensus 366 vWd~~t~~~-i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~----~~~~~~~h~~~I~~i~~sp~~~ 439 (587)
+||++++.. ...+.. ...+..+.++|..+ .+|++++.|++++|||++... .+.....|...|++..|+|.+-
T Consensus 305 ~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p--~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 305 VIDLRTDGSEYENLRLHKKKITSVALNPVCP--WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred EEEeecCCccchhhhhhhcccceeecCCCCc--hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 999998764 333332 23556677777554 789999999999999998642 2233446999999999999998
Q ss_pred EEEEEECCCCEEEEECC----CCeEEEEeecCCCc----ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec
Q 007855 440 RFVTSSDDKSLRVWEFG----IPVVIKYISEPHMH----SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~----~~~~~~~~~~~~~~----~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
.|++.+.|..|+|||.. ...+...+...+.. ......|.|+..+|++|-.-..|-|||-..++.+.. +.
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~e---l~ 459 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCE---LH 459 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeee---cc
Confidence 89999999999999983 33344444322222 234568999999999999999999999887764432 22
Q ss_pred ccccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCC
Q 007855 512 GHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~ 546 (587)
........+-..|+|-+. +++.|+..|.|+||--+
T Consensus 460 ~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 460 DPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred CccccccccceeecccccceeccCCccceEEEEecC
Confidence 222222333468999888 45555678889988644
No 176
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=1.2e-16 Score=152.06 Aligned_cols=213 Identities=15% Similarity=0.309 Sum_probs=165.2
Q ss_pred CceEEEEcCCCCCeEEEEEc-cCCCcEEEEEeCCCeEEEEecCCC--------CeeeEEEcccCCceeeEEEec--CCCe
Q 007855 286 KRLVHTWSGHTKGVSAIRFF-PKYGHLILSAGMDTKVKIWDVFNS--------GKCMRTYMGHSKAVRDISFCN--DGTK 354 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~s-p~~g~~L~sgs~Dg~I~iWd~~~~--------~~~~~~~~~h~~~V~~l~fs~--dg~~ 354 (587)
..+...|+.|.+.|..|.|. |..|+.+|+|+.|++|.||.-... -....++......|++|.|.| -|-.
T Consensus 49 W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 49 WSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred eEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceE
Confidence 45778999999999999994 567999999999999999975211 123456777889999999999 5789
Q ss_pred EEEEeCCCeEEEEECCCCc------EEEEee--------cCCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCC
Q 007855 355 FLTASYDKNIKYWDTETGQ------VIRTFS--------TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNT 415 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~------~i~~~~--------~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t 415 (587)
|++++.||.||||+.-.-- +...+. ......|+.|++..-...+|++|+.+ +.+.||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9999999999999865432 222332 33445688888776666788888876 5788887654
Q ss_pred C----cEEEEEccCCCCeeEEEEecCC----CEEEEEECCCCEEEEECCCC-----------------eEEEE--eecCC
Q 007855 416 K----EITQEYDQHLGAVNTITFVDNN----RRFVTSSDDKSLRVWEFGIP-----------------VVIKY--ISEPH 468 (587)
Q Consensus 416 ~----~~~~~~~~h~~~I~~i~~sp~~----~~l~s~s~Dg~I~iwd~~~~-----------------~~~~~--~~~~~ 468 (587)
+ ..+.++..|..+|+.|+|.|+- ..|++++.|| |+||.+... ..+.. ....|
T Consensus 209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H 287 (361)
T KOG2445|consen 209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH 287 (361)
T ss_pred CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence 3 3456678999999999999953 4699999999 999998631 11112 23468
Q ss_pred CcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 469 MHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 469 ~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
...|..+.|+-.|..|++.+.||.|++|...
T Consensus 288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred CCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 8899999999999999999999999999754
No 177
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=8.5e-16 Score=158.83 Aligned_cols=271 Identities=9% Similarity=0.153 Sum_probs=177.1
Q ss_pred EEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEEECC-CCcE--EEEeecCCcc
Q 007855 311 LILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTE-TGQV--IRTFSTGKIP 384 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~-t~~~--i~~~~~~~~~ 384 (587)
++++...++.|.+|++...++ .+..+. +......++++|++++|++++ .++.|.+|++. ++.. +........+
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p 82 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSP 82 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCc
Confidence 344557789999999943343 445554 346678899999999987765 47889999997 3432 3334444456
Q ss_pred eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC----cEEEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCe
Q 007855 385 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPV 459 (587)
Q Consensus 385 ~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~----~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~ 459 (587)
..+.+.+++. .++++...++.|.+|++.+. +.+..+. +.....+++++|+++++++++ .++.|.+||+....
T Consensus 83 ~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g 159 (330)
T PRK11028 83 THISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG 159 (330)
T ss_pred eEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC
Confidence 6677776543 44555556899999999742 2233332 334567889999999886555 56899999997633
Q ss_pred EEEE-----eecCCCcceeEEEEeCCCCEEEEEEC-CCeEEEEEcCCc-eeecccceec---cc-ccccceEEEEEcCCC
Q 007855 460 VIKY-----ISEPHMHSMPSISLHPNTNWLAAQSL-DNQILIYSTRER-FQLNKKKRFA---GH-IVAGYACQVNFSPDG 528 (587)
Q Consensus 460 ~~~~-----~~~~~~~~i~~i~~sp~g~~l~~~s~-dg~I~iwd~~~~-~~~~~~~~~~---~~-~~~~~i~~l~~spdg 528 (587)
.+.. +..+.......+.|+|++++|+++.. ++.|.+|++... ..+.....+. .. ....+...+.|+|+|
T Consensus 160 ~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 160 HLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred cccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 2211 11123345678999999999988876 899999998632 1111111111 11 011234468899999
Q ss_pred CEEEEEcC-CCcEEEEeCCCCe----eEEEEecCCCCEEEEEEcCCCCCEEEEEE-CCCcEEEcC
Q 007855 529 RFVMSGDG-EGKCWFWDWKSCK----VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 587 (587)
Q Consensus 529 ~~L~sgs~-dG~I~vwd~~t~~----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 587 (587)
++|+++.. ++.|.+|++.... .+..+... .....+.|+| ++++|+++. .+++|.+|+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~-~~p~~~~~~~-dg~~l~va~~~~~~v~v~~ 302 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE-TQPRGFNIDH-SGKYLIAAGQKSHHISVYE 302 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc-ccCCceEECC-CCCEEEEEEccCCcEEEEE
Confidence 99998864 6889999986432 23333222 2346789999 566666655 489999983
No 178
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=2.8e-16 Score=148.31 Aligned_cols=260 Identities=20% Similarity=0.337 Sum_probs=194.6
Q ss_pred CCCeEEEEecCCCCee--eEEEcccCCceeeEEEec-CCCeEEEEeCC-------CeEEEEECCCC---------cEEEE
Q 007855 317 MDTKVKIWDVFNSGKC--MRTYMGHSKAVRDISFCN-DGTKFLTASYD-------KNIKYWDTETG---------QVIRT 377 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~--~~~~~~h~~~V~~l~fs~-dg~~l~s~s~D-------g~I~vWd~~t~---------~~i~~ 377 (587)
.|+.|.+..+...+.. ...|..|.+.|..|+-+| +.+.|+++..+ -.+.||.+... +++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 3677877777443332 245777899999999999 45556665442 24789987532 23334
Q ss_pred eec--CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEc-----cCCCCeeEEEEec--CCCEEEEEECC
Q 007855 378 FST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD-----QHLGAVNTITFVD--NNRRFVTSSDD 447 (587)
Q Consensus 378 ~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~-----~h~~~I~~i~~sp--~~~~l~s~s~D 447 (587)
+.. .....|+.|.|+.+ -+++..+..|.+|++..+.. +..+. .+....++-+|+| +++.+++.+ |
T Consensus 118 Ldteavg~i~cvew~Pns~----klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~-d 192 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSD----KLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTS-D 192 (370)
T ss_pred CCHHHhCceeeEEEcCCCC----eeEEeccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeC-C
Confidence 432 23457888999665 34444599999999987754 43332 3556778889998 677776654 7
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
+++..||+++......+...|...+..+.|+|+.+ +|++|+.||.|+|||++... .....+.+| ..++.++.|+|
T Consensus 193 ~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~H--sHWvW~VRfn~ 268 (370)
T KOG1007|consen 193 STLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGH--SHWVWAVRFNP 268 (370)
T ss_pred CcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCC--ceEEEEEEecC
Confidence 89999999999999999999999999999999875 57888999999999998643 234566677 67899999999
Q ss_pred C-CCEEEEEcCCCcEEEEeCCCC-----------------------------eeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 527 D-GRFVMSGDGEGKCWFWDWKSC-----------------------------KVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 527 d-g~~L~sgs~dG~I~vwd~~t~-----------------------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
. .++|++|++|..|.+|...+- ..+.++..|...|.+++|+..+.-.+|+
T Consensus 269 ~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFAS 348 (370)
T KOG1007|consen 269 EHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFAS 348 (370)
T ss_pred ccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEE
Confidence 4 567889999999999975211 1244667799999999999989999999
Q ss_pred EECCCcEEE
Q 007855 577 CGWDGLIKY 585 (587)
Q Consensus 577 ~g~DG~I~i 585 (587)
-+.||++.|
T Consensus 349 LSYDGRviI 357 (370)
T KOG1007|consen 349 LSYDGRVII 357 (370)
T ss_pred eccCceEEe
Confidence 999999876
No 179
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=3.3e-16 Score=167.33 Aligned_cols=246 Identities=18% Similarity=0.279 Sum_probs=180.8
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCee-e----EEEcccCCceeeEEEecCC--CeEEEEeCCCeEEEEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC-M----RTYMGHSKAVRDISFCNDG--TKFLTASYDKNIKYWD 368 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~-~----~~~~~h~~~V~~l~fs~dg--~~l~s~s~Dg~I~vWd 368 (587)
...|+|+.|+|...++|+.|+.+|.|.+||+...+.. . .....|..+|+.+.|..+- .-|++++.||.|..|+
T Consensus 242 ~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~ 321 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWD 321 (555)
T ss_pred CCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeee
Confidence 4689999999998999999999999999999544432 1 1233689999999998744 4599999999999998
Q ss_pred CCCCcEE------E-------EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---CC-----cEEEEEccCCC
Q 007855 369 TETGQVI------R-------TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK-----EITQEYDQHLG 427 (587)
Q Consensus 369 ~~t~~~i------~-------~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---t~-----~~~~~~~~h~~ 427 (587)
++.-... . .+.......++.|.+... +.|++|+..|.|..-+-. .. +....+..|.+
T Consensus 322 ~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p--~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 322 TDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDP--NHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred ccccccchhhcccccccccccccccccceeeEeeccCCC--ceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 8643221 0 112223345667766544 689999999999874332 22 12345667899
Q ss_pred CeeEEEEecCCCEEEEEECCCCEEEEECC-CCeEEEEeecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceeec
Q 007855 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+|+++.++|-+..++.++.|-+|+||... ...++..+ ..+...+++++|+|.. ..|+++..+|.|.+||+.....-.
T Consensus 400 ~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~-~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~P 478 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSL-DSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEP 478 (555)
T ss_pred ceEeeecCCCccceeeeeccceeEeccccCCCCcchhh-hhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCC
Confidence 99999999987776666669999999987 44444443 3466679999999975 577888889999999986543221
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
... ..-. ....+.+.|++.|++|++|+..|.+++|++..
T Consensus 479 v~s-~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 479 VLS-QKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred ccc-cccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 111 1111 34566788999999999999999999999853
No 180
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.73 E-value=1.3e-15 Score=162.78 Aligned_cols=262 Identities=15% Similarity=0.212 Sum_probs=184.6
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcE--E---EEeecCC--cceEEEE
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV--I---RTFSTGK--IPYVVKL 389 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~--i---~~~~~~~--~~~~~~~ 389 (587)
++.+.||++.....+-..+. -...|+|+.|+| +..+|+.|+++|.|.+||++.+.. . ......+ ....+.|
T Consensus 221 ~~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW 299 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVW 299 (555)
T ss_pred CceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEE
Confidence 35799999966655555554 557899999999 778889999999999999987765 2 2222333 3344555
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EE-----EEc------cCCCCeeEEEEec-CCCEEEEEECCCCEEEEECC
Q 007855 390 NPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQ-----EYD------QHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~-----~~~------~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~ 456 (587)
..+..+ .-|++++.||.|..|+++.-.. +. ... .....++++.|.+ +-..|++|+++|.|.--+..
T Consensus 300 ~~~~~~-~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~ 378 (555)
T KOG1587|consen 300 LQNEHN-TEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRK 378 (555)
T ss_pred eccCCC-CceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEecc
Confidence 555444 5689999999999998875432 11 111 1234688899987 44579999999998774332
Q ss_pred C---Ce----EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC-CceeecccceecccccccceEEEEEcCCC
Q 007855 457 I---PV----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 457 ~---~~----~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
. .. ........|.++|.++.++|-+..++..+.|.+|+||... ...++ ..+..+ ..++++++|||--
T Consensus 379 g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl---~~~~~~--~~~v~~vaWSptr 453 (555)
T KOG1587|consen 379 GYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPL---LSLDSS--PDYVTDVAWSPTR 453 (555)
T ss_pred CCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcc---hhhhhc--cceeeeeEEcCcC
Confidence 2 22 1112223578899999999977666555569999999876 33222 222223 4568899999976
Q ss_pred C-EEEEEcCCCcEEEEeCCC--CeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 529 R-FVMSGDGEGKCWFWDWKS--CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 529 ~-~L~sgs~dG~I~vwd~~t--~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
. .+++++.+|.|.|||+.. ..++.+.+.+....+.+.|++ .+..|+.|...|+|.+|+
T Consensus 454 pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~-~g~~lavGd~~G~~~~~~ 514 (555)
T KOG1587|consen 454 PAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSP-NGKLLAVGDANGTTHILK 514 (555)
T ss_pred ceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCC-CCcEEEEecCCCcEEEEE
Confidence 4 567888899999999964 355666666666667778877 788999999999999985
No 181
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.9e-17 Score=165.36 Aligned_cols=252 Identities=16% Similarity=0.239 Sum_probs=189.1
Q ss_pred CCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEE
Q 007855 243 GEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 322 (587)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 322 (587)
++.....+..+...+....|...+.|.. +. .....-...+++.+|++|.++|.|++..+. ++.+++|+.||+|+
T Consensus 296 ~ir~l~~~~sep~lit~sed~~lk~WnL--qk---~~~s~~~~~epi~tfraH~gPVl~v~v~~n-~~~~ysgg~Dg~I~ 369 (577)
T KOG0642|consen 296 CIRALAFHPSEPVLITASEDGTLKLWNL--QK---AKKSAEKDVEPILTFRAHEGPVLCVVVPSN-GEHCYSGGIDGTIR 369 (577)
T ss_pred hhhhhhcCCCCCeEEEeccccchhhhhh--cc---cCCccccceeeeEEEecccCceEEEEecCC-ceEEEeeccCceee
Confidence 4444555666666778888888888887 11 111222345688999999999999999999 99999999999999
Q ss_pred EEecCC---------CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee---cCCcceEEEEc
Q 007855 323 IWDVFN---------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLN 390 (587)
Q Consensus 323 iWd~~~---------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~---~~~~~~~~~~~ 390 (587)
.|++.. ......++.||.+.|+.+++|.....|++|+.||++++|+.....+ .+|. ....+..+.+.
T Consensus 370 ~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ 448 (577)
T KOG0642|consen 370 CWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRT 448 (577)
T ss_pred eeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeec
Confidence 996631 2244567889999999999999989999999999999999877766 3333 23344455544
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-------CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEE
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKY 463 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-------h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 463 (587)
... ..+.++...-+.-.++++.....+..+.. ....++-+.++|.+.+.+++..|+.|+++|..++..+..
T Consensus 449 ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s 526 (577)
T KOG0642|consen 449 SSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHS 526 (577)
T ss_pred cch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchh
Confidence 332 12344444445555555555544444432 124577889999999999999999999999999988776
Q ss_pred eecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 464 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 464 ~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
.. .|...++++++.|+|-+|++++.|+.|++|.+....++
T Consensus 527 ~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~ 566 (577)
T KOG0642|consen 527 MV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCV 566 (577)
T ss_pred ee-eccceecceeecCCCceEEeecCCceeehhhccchhee
Confidence 64 48889999999999999999999999999998655433
No 182
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.72 E-value=2.2e-15 Score=144.25 Aligned_cols=279 Identities=18% Similarity=0.312 Sum_probs=199.1
Q ss_pred cccccceEeecccccccceeeeeCCCCcccC-CCcccCCCceEEEEcCCCCCeEEEEEc-------cCCCcEEEEEeCCC
Q 007855 248 HVEDKSTFHGKEEKDYQGRSWVAPPKDAKAA-NDHCYIPKRLVHTWSGHTKGVSAIRFF-------PKYGHLILSAGMDT 319 (587)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~-~~~~~~p~~~i~tl~gH~~~V~~l~~s-------p~~g~~L~sgs~Dg 319 (587)
+.++.+.++. ...|...+.|-.|+...... ....+.+..+...+. ....|...+|. |. ..++++.+.+.
T Consensus 57 WSPDGSciL~-~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~-eg~tvydy~wYs~M~s~qP~-t~l~a~ssr~~ 133 (406)
T KOG2919|consen 57 WSPDGSCILS-LSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQ-EGETVYDYCWYSRMKSDQPS-TNLFAVSSRDQ 133 (406)
T ss_pred eCCCCceEEe-ecccCeeeEEecChhhcccCCCCccccccceeEEec-cCCEEEEEEeeeccccCCCc-cceeeeccccC
Confidence 4555566644 55577778888877664333 223333333332222 23468888887 45 67999999999
Q ss_pred eEEEEecCCCCeeeEEEcc--cCC---ceeeEEEecCCCeEEEEeCCCeEEEEEC-CCCcEEE---Eee-----cCCcce
Q 007855 320 KVKIWDVFNSGKCMRTYMG--HSK---AVRDISFCNDGTKFLTASYDKNIKYWDT-ETGQVIR---TFS-----TGKIPY 385 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~--h~~---~V~~l~fs~dg~~l~s~s~Dg~I~vWd~-~t~~~i~---~~~-----~~~~~~ 385 (587)
-|++||. -+++....+.+ |.. +..+++|+|||.+|++| +.+.|+++|+ +.|.... ++. ......
T Consensus 134 PIh~wda-ftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 134 PIHLWDA-FTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred ceeeeec-cccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999 68887777653 433 45689999999999876 5689999999 5554221 222 233445
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CCCEEEEECCCCeEEEEe
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~ 464 (587)
+++++|... .++++|+....+-||.-..+.+++.+-+|.+.|+.++|.++|+.|++|.. |-.|.+||++.......-
T Consensus 212 c~a~sP~~~--~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~ 289 (406)
T KOG2919|consen 212 CFAFSPMDS--KTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA 289 (406)
T ss_pred eeeccCCCC--cceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence 667777544 58999999999999999999999999999999999999999999999975 668999999876543332
Q ss_pred ecCCC---cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 465 SEPHM---HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 465 ~~~~~---~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
...|. ..-.-+.+.|.+++|++|+.+|.|++||+.+... ....+..+ ...+..++++|--.++++++..
T Consensus 290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn--~~sv~~~~--sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN--EVSVTGNY--SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC--cccccccc--cccccceecCcccceeeeccCc
Confidence 22232 2333456678999999999999999999987322 12222223 4556679999998888888765
No 183
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.3e-15 Score=160.02 Aligned_cols=287 Identities=14% Similarity=0.227 Sum_probs=205.7
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC---CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN---SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
.|...++|.++||+ ++++++|..||.|.+|.-.. .....+.+.-|...|.+++|+++|.+|+||+..|.+.+|.+.
T Consensus 203 ~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccc-cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence 46777999999999 99999999999999997522 223445677899999999999999999999999999999999
Q ss_pred CCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-----------CCCCeeEEEEecCCC
Q 007855 371 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-----------HLGAVNTITFVDNNR 439 (587)
Q Consensus 371 t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-----------h~~~I~~i~~sp~~~ 439 (587)
+++...--..+..+..+.+++++ .+.+....|..|.+....+.....++.+ ..+-.+.++++|..+
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds---~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~ 358 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDS---DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN 358 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCC---CeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence 99854444566777777777765 4677888899999998876655444432 234467788999888
Q ss_pred EEEEEECCCCEEEEECCCCeEEEEeec----C------CCcceeEEEEeCCCCEEEEEE--------CC--CeEEEEEcC
Q 007855 440 RFVTSSDDKSLRVWEFGIPVVIKYISE----P------HMHSMPSISLHPNTNWLAAQS--------LD--NQILIYSTR 499 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~------~~~~i~~i~~sp~g~~l~~~s--------~d--g~I~iwd~~ 499 (587)
.++..+..|.|.+||+-+...+..+.. . +.-.++.++.+..|.++++.- .| ..+++|-..
T Consensus 359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n 438 (792)
T KOG1963|consen 359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN 438 (792)
T ss_pred ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence 899999999999999977655543321 1 122466777777899988863 22 346778654
Q ss_pred Cceeecc--cceecccccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCC----------eeEEEEecCCCCEEEEEE
Q 007855 500 ERFQLNK--KKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSC----------KVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 500 ~~~~~~~--~~~~~~~~~~~~i~~l~~spd-g~~L~sgs~dG~I~vwd~~t~----------~~~~~l~~h~~~V~~v~~ 566 (587)
....-.. ......|.....++ +.+++. ...+++++.||.++||-+... .+...-.-|..++++++|
T Consensus 439 ~~~kt~~L~T~I~~PH~~~~vat-~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~f 517 (792)
T KOG1963|consen 439 PNSKTFILNTKINNPHGNAFVAT-IFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCF 517 (792)
T ss_pred CCcceeEEEEEEecCCCceeEEE-EEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhh
Confidence 3322111 12223343333333 333333 337899999999999988321 122211237889999999
Q ss_pred cCCCCCEEEEEECCCcEEEcC
Q 007855 567 HPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 567 sp~~~~~l~s~g~DG~I~iWD 587 (587)
+. ++ .++++|.|++|.|||
T Consensus 518 s~-dG-slla~s~~~~Itiwd 536 (792)
T KOG1963|consen 518 SQ-DG-SLLAVSFDDTITIWD 536 (792)
T ss_pred cC-CC-cEEEEecCCEEEEec
Confidence 98 55 588888999999998
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.71 E-value=3.6e-18 Score=180.29 Aligned_cols=239 Identities=23% Similarity=0.397 Sum_probs=188.5
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
+.++.|.||...|+|+.|... |+++++|+.|..|+||.. .+..++....||.+.|++++.+.+..+++++|.|..|++
T Consensus 181 k~ikrLlgH~naVyca~fDrt-g~~Iitgsdd~lvKiwS~-et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRT-GRYIITGSDDRLVKIWSM-ETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccc-cceEeecCccceeeeeec-cchhhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 456778899999999999998 999999999999999997 899999999999999999999888777888887777777
Q ss_pred EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 367 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
|.+.. +.++..+.+|.++|++|+|+|-. +.+.
T Consensus 259 Wrl~~--------------------------------------------~~pvsvLrghtgavtaiafsP~~----sss~ 290 (1113)
T KOG0644|consen 259 WRLPD--------------------------------------------GAPVSVLRGHTGAVTAIAFSPRA----SSSD 290 (1113)
T ss_pred EecCC--------------------------------------------CchHHHHhccccceeeeccCccc----cCCC
Confidence 76654 34445567899999999999864 7889
Q ss_pred CCCEEEEECCCCeEEEEeec----CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEE
Q 007855 447 DKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
||++++||.+- ..+.+... ....-+.++.+..++.-+++++.|+.-..|.+... ..+ ...+.-+
T Consensus 291 dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------~~~--~~~lif~ 358 (1113)
T KOG0644|consen 291 DGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------AWR--SNLLIFV 358 (1113)
T ss_pred CCceEeccccc-cccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHh---------hhh--ccceEEE
Confidence 99999999982 22222211 12344667778888889999999998888865321 011 0011112
Q ss_pred EEcCC-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 523 NFSPD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 523 ~~spd-g~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.++.+ ..+.++.-.+-.+++|++.+|.+++.+.+|...+..+.+||.+.....++|.||.+.|||
T Consensus 359 t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwd 424 (1113)
T KOG0644|consen 359 TRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWD 424 (1113)
T ss_pred eccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeee
Confidence 22222 246677777889999999999999999999999999999999999999999999999997
No 185
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=161.96 Aligned_cols=242 Identities=17% Similarity=0.243 Sum_probs=181.0
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
..++.+++||.+.|+|++|+.+ |.+++||+.|..|.||+-...|.+ .+ .|.+.|.||.|+|-...|++|+- ...-
T Consensus 43 G~llqtLKgHKDtVycVAys~d-GkrFASG~aDK~VI~W~~klEG~L--kY-SH~D~IQCMsFNP~~h~LasCsL-sdFg 117 (1081)
T KOG1538|consen 43 GTLLQPLKGHKDTVYCVAYAKD-GKRFASGSADKSVIIWTSKLEGIL--KY-SHNDAIQCMSFNPITHQLASCSL-SDFG 117 (1081)
T ss_pred cccccccccccceEEEEEEccC-CceeccCCCceeEEEeccccccee--ee-ccCCeeeEeecCchHHHhhhcch-hhcc
Confidence 4567899999999999999999 999999999999999987433332 22 59999999999999999999987 4577
Q ss_pred EEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCCCeeEEEEecCC----
Q 007855 366 YWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDNN---- 438 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~~I~~i~~sp~~---- 438 (587)
+|..+..... . ......++++++.. .+.+++.|..+|+|.+-+-. ++....+ -+...+|.+|+|+|..
T Consensus 118 lWS~~qK~V~-K--~kss~R~~~CsWtn-DGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~ 192 (1081)
T KOG1538|consen 118 LWSPEQKSVS-K--HKSSSRIICCSWTN-DGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGR 192 (1081)
T ss_pred ccChhhhhHH-h--hhhheeEEEeeecC-CCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCc
Confidence 8887643322 2 22233344444443 34689999999999998654 3332233 3477899999999853
Q ss_pred -CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc
Q 007855 439 -RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 439 -~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
..+++.....++.++.+.....-+.- .......|+.+.++|.+++.|+.|+.+.+|... +..+..... ...
T Consensus 193 ~di~aV~DW~qTLSFy~LsG~~Igk~r--~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~-----~D~ 264 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLSGKQIGKDR--ALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-GVRLGTVGE-----QDS 264 (1081)
T ss_pred cceEEEEeccceeEEEEecceeecccc--cCCCCchhheeccCCcEEEEccCCCceEEEeec-CeEEeeccc-----cce
Confidence 46777777888888877543332221 233456789999999999999999999999643 333322222 367
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
+|..++..|++++++.|+.||+|-.|++
T Consensus 265 WIWtV~~~PNsQ~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 265 WIWTVQAKPNSQYVVVGCQDGTIACYNL 292 (1081)
T ss_pred eEEEEEEccCCceEEEEEccCeeehhhh
Confidence 8999999999999999999999999986
No 186
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=7.9e-16 Score=164.55 Aligned_cols=234 Identities=14% Similarity=0.136 Sum_probs=165.9
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 394 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~ 394 (587)
+..|.|||. .+...+.+..|...|.+.+|+|+|++|+.++.+ ..|.+||+.+++...............|+|++.
T Consensus 183 ~~~i~i~d~--dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~ 260 (429)
T PRK01742 183 PYEVRVADY--DGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGS 260 (429)
T ss_pred eEEEEEECC--CCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCC
Confidence 578999998 344456677888899999999999999988764 369999999886533322222334567887653
Q ss_pred CCcEEEEEeCCCcEE--EEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCe-EEEEeecCCCc
Q 007855 395 KQNILLAGMSDKKIV--QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPV-VIKYISEPHMH 470 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~--iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~-~~~~~~~~~~~ 470 (587)
.++++...+|.+. +||+.++.. ..+..+...+.+..|+|+++.|+.++ .++...||++.... ....+ .+..
T Consensus 261 --~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l--~~~~ 335 (429)
T PRK01742 261 --RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV--GGRG 335 (429)
T ss_pred --EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe--cCCC
Confidence 3444455677655 457766654 44556777788999999999877665 57888888765321 12222 1222
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC--CCC
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW--KSC 548 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~--~t~ 548 (587)
.+..|+|+|++|++.+.++ +.+||+.++......... ....+.|+|+|++|+.++.+|.+.+|.+ .++
T Consensus 336 --~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~~-------~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G 405 (429)
T PRK01742 336 --YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSSTF-------LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG 405 (429)
T ss_pred --CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCCC-------CCCCceECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 4578999999999888765 666998776432211111 1124789999999999999998888876 368
Q ss_pred eeEEEEecCCCCEEEEEEcC
Q 007855 549 KVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 549 ~~~~~l~~h~~~V~~v~~sp 568 (587)
+....+.+|.+.+...+|+|
T Consensus 406 ~~~~~l~~~~g~~~~p~wsp 425 (429)
T PRK01742 406 RFKARLPGSDGQVKFPAWSP 425 (429)
T ss_pred CceEEccCCCCCCCCcccCC
Confidence 88888988999899999998
No 187
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.71 E-value=8.3e-16 Score=150.66 Aligned_cols=254 Identities=16% Similarity=0.247 Sum_probs=178.3
Q ss_pred CcEEEE---EeCCCeEEEEecCCCCee---eEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcE-------
Q 007855 309 GHLILS---AGMDTKVKIWDVFNSGKC---MRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV------- 374 (587)
Q Consensus 309 g~~L~s---gs~Dg~I~iWd~~~~~~~---~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~------- 374 (587)
+++|+. ++..|...+--+...|+. .-.+.||.++|.+++|+| +...|+|||.|.+|.||.+-.+..
T Consensus 44 PkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltep 123 (472)
T KOG0303|consen 44 PKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEP 123 (472)
T ss_pred CceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccc
Confidence 445543 233345555544344433 234569999999999999 677899999999999999876543
Q ss_pred EEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEE
Q 007855 375 IRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453 (587)
Q Consensus 375 i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iw 453 (587)
+..+.. ...+..+.|+|.. .++|++++.|..|.+|++.+++.+.++. |...|.++.|+-+|.+|++++.|+.|+||
T Consensus 124 vv~L~gH~rrVg~V~wHPtA--~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~ 200 (472)
T KOG0303|consen 124 VVELYGHQRRVGLVQWHPTA--PNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVI 200 (472)
T ss_pred eEEEeecceeEEEEeecccc--hhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEE
Confidence 333332 2344567777754 4899999999999999999999988887 99999999999999999999999999999
Q ss_pred ECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE---CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 454 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 454 d~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
|.+++..+..-.......-..+.|-.++.++.+|. .+.++-+||..+-........+.. +..|.---|.+|..+
T Consensus 201 dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt---SnGvl~PFyD~dt~i 277 (472)
T KOG0303|consen 201 DPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDT---SNGVLLPFYDPDTSI 277 (472)
T ss_pred cCCCCcEeeecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEecc---CCceEEeeecCCCCE
Confidence 99999888776332333455677778888666653 468899998765433322222222 233443456788777
Q ss_pred EE-EEcCCCcEEEEeCCCCee-EEEEec--CCCCEEEEEEcC
Q 007855 531 VM-SGDGEGKCWFWDWKSCKV-FRTLKC--HEGVCIGCEWHP 568 (587)
Q Consensus 531 L~-sgs~dG~I~vwd~~t~~~-~~~l~~--h~~~V~~v~~sp 568 (587)
|. +|-.|+.|+-|.+..-.+ ++-+.. ...+-.++.|.|
T Consensus 278 vYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mP 319 (472)
T KOG0303|consen 278 VYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMP 319 (472)
T ss_pred EEEEecCCcceEEEEecCCCceeEEecccccCCccccccccc
Confidence 64 677899999999876553 222221 223445555555
No 188
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.70 E-value=2.2e-14 Score=148.23 Aligned_cols=270 Identities=13% Similarity=0.179 Sum_probs=174.3
Q ss_pred ccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEE-eCCCeEEEEecCCCCee--eEE
Q 007855 259 EEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA-GMDTKVKIWDVFNSGKC--MRT 335 (587)
Q Consensus 259 ~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sg-s~Dg~I~iWd~~~~~~~--~~~ 335 (587)
...+..++.|...... ..+++.++. +.+....|+++|+ +++|+++ ..++.|.+|++...+.. +..
T Consensus 8 ~~~~~~I~~~~~~~~g----------~l~~~~~~~-~~~~~~~l~~spd-~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~ 75 (330)
T PRK11028 8 SPESQQIHVWNLNHEG----------ALTLLQVVD-VPGQVQPMVISPD-KRHLYVGVRPEFRVLSYRIADDGALTFAAE 75 (330)
T ss_pred cCCCCCEEEEEECCCC----------ceeeeeEEe-cCCCCccEEECCC-CCEEEEEECCCCcEEEEEECCCCceEEeee
Confidence 3456667777553210 112445554 3456788999999 7776554 56899999999433432 222
Q ss_pred EcccCCceeeEEEecCCCeEEEEeC-CCeEEEEECCC-C---cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 336 YMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTET-G---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 336 ~~~h~~~V~~l~fs~dg~~l~s~s~-Dg~I~vWd~~t-~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.. .......++|+|++++|++++. ++.|.+|++.+ + +.+..+.....+..+.+.|++ ..++++...++.|.+
T Consensus 76 ~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g--~~l~v~~~~~~~v~v 152 (330)
T PRK11028 76 SP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDN--RTLWVPCLKEDRIRL 152 (330)
T ss_pred ec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCC--CEEEEeeCCCCEEEE
Confidence 22 3345678999999999998875 78999999974 2 233333333445666777644 355667777899999
Q ss_pred EeCCCCcEEEE-----Ec-cCCCCeeEEEEecCCCEEEEEEC-CCCEEEEECCC--C--eEEEEeec-C----CCcceeE
Q 007855 411 WDMNTKEITQE-----YD-QHLGAVNTITFVDNNRRFVTSSD-DKSLRVWEFGI--P--VVIKYISE-P----HMHSMPS 474 (587)
Q Consensus 411 wD~~t~~~~~~-----~~-~h~~~I~~i~~sp~~~~l~s~s~-Dg~I~iwd~~~--~--~~~~~~~~-~----~~~~i~~ 474 (587)
||+.+...+.. .. ........+.|+|++++++++.. +++|.+|++.. + ..+..+.. + .......
T Consensus 153 ~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 232 (330)
T PRK11028 153 FTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAAD 232 (330)
T ss_pred EEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCcccee
Confidence 99986332211 11 12344678999999999988876 89999999973 2 22322221 1 1112235
Q ss_pred EEEeCCCCEEEEEEC-CCeEEEEEcCCce-eecccceecccccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCC
Q 007855 475 ISLHPNTNWLAAQSL-DNQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWK 546 (587)
Q Consensus 475 i~~sp~g~~l~~~s~-dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-dG~I~vwd~~ 546 (587)
+.++|++++|+++.. ++.|.+|++.... .+........ ......+.|+|+|++|+++.. ++.|.+|++.
T Consensus 233 i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~---~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 233 IHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT---ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec---cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 889999999998854 6899999985432 1111111111 123345899999999998775 8899999874
No 189
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=3.2e-15 Score=141.36 Aligned_cols=284 Identities=16% Similarity=0.289 Sum_probs=200.4
Q ss_pred EEEEcCCCCCeEEEEEc--cCCCcEEEEEeC----CCeEEEEecCCCC-eeeEE-EcccCCceeeEEEecCCC-----eE
Q 007855 289 VHTWSGHTKGVSAIRFF--PKYGHLILSAGM----DTKVKIWDVFNSG-KCMRT-YMGHSKAVRDISFCNDGT-----KF 355 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~s--p~~g~~L~sgs~----Dg~I~iWd~~~~~-~~~~~-~~~h~~~V~~l~fs~dg~-----~l 355 (587)
+.++..|- .+.++.|+ |+...+|+.|+. .+.|.|-.+.... +.+.. -..|.-+++.+.|.|+.. +|
T Consensus 38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchh
Confidence 45555443 58888888 444678888874 4667776663332 22221 136899999999999753 55
Q ss_pred EEEeCCCeEEEEECCC--CcEE--EEee----cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc---EEEEEcc
Q 007855 356 LTASYDKNIKYWDTET--GQVI--RTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQ 424 (587)
Q Consensus 356 ~s~s~Dg~I~vWd~~t--~~~i--~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~---~~~~~~~ 424 (587)
++++ ..+|+|.+.. .+.. ..+. .........|.++.-..+++.+++-|-+..|||+.++. ....+-.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA 194 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA 194 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe
Confidence 6554 5899999873 2211 1111 12223345566666667899999999999999999863 3556778
Q ss_pred CCCCeeEEEEecCC-CEEEEEECCCCEEEEECCCCeEEEEeec-CC-CcceeEEEEeCC-CCEEEEEECC-CeEEEEEcC
Q 007855 425 HLGAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-PH-MHSMPSISLHPN-TNWLAAQSLD-NQILIYSTR 499 (587)
Q Consensus 425 h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~-~~~i~~i~~sp~-g~~l~~~s~d-g~I~iwd~~ 499 (587)
|...|..|+|...+ ..|++.+.||+||+||++...-...+.+ +. ..+...++|+++ -+++|+-.+| ..|.|.|++
T Consensus 195 HDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR 274 (364)
T KOG0290|consen 195 HDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR 274 (364)
T ss_pred cCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec
Confidence 99999999999744 5699999999999999998655444433 22 467888888875 4677776555 579999998
Q ss_pred CceeecccceecccccccceEEEEEcCC-CCEEEEEcCCCcEEEEeCCCCee------EEEEecCCCCEEEEEEcCCCCC
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGEGKCWFWDWKSCKV------FRTLKCHEGVCIGCEWHPLEQS 572 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~L~sgs~dG~I~vwd~~t~~~------~~~l~~h~~~V~~v~~sp~~~~ 572 (587)
... .....+.+| .+.|..++|.|. ...|++++.|..+.+||+.+.-. +..+. -.+.|+.+.|++..+.
T Consensus 275 ~P~--tpva~L~~H--~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 275 VPC--TPVARLRNH--QASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCC--cceehhhcC--cccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCC
Confidence 643 335567777 577889999995 46789999999999999976422 22222 4567999999987777
Q ss_pred EEEEEECC
Q 007855 573 KVATCGWD 580 (587)
Q Consensus 573 ~l~s~g~D 580 (587)
.|+.|...
T Consensus 350 wiai~~~k 357 (364)
T KOG0290|consen 350 WIAICFGK 357 (364)
T ss_pred EEEEEecC
Confidence 88877643
No 190
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.70 E-value=2e-15 Score=142.77 Aligned_cols=252 Identities=15% Similarity=0.272 Sum_probs=181.9
Q ss_pred eeeEEEcccCCceeeEEEec---CCCeEEEEeC----CCeEEEEE--CCCCcEEEE--eecCCcceEEEEccCCCC--Cc
Q 007855 331 KCMRTYMGHSKAVRDISFCN---DGTKFLTASY----DKNIKYWD--TETGQVIRT--FSTGKIPYVVKLNPDDDK--QN 397 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~---dg~~l~s~s~----Dg~I~vWd--~~t~~~i~~--~~~~~~~~~~~~~~~~~~--~~ 397 (587)
+.+..+..+ -.+.++.|+. ...+|+.|+. .+.|.|.. .++++.+.. |.....+.-+.|.|+... ..
T Consensus 36 ~eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pd 114 (364)
T KOG0290|consen 36 KEIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPD 114 (364)
T ss_pred ceEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcc
Confidence 334444433 4577888874 3447777775 35566553 445555543 455556667888887642 23
Q ss_pred EEEEEeCCCcEEEEeCCCC--cEE--EE-----EccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCeE--EEEee
Q 007855 398 ILLAGMSDKKIVQWDMNTK--EIT--QE-----YDQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPVV--IKYIS 465 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~--~~~--~~-----~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~ 465 (587)
+|++ .+..+++|.+... +.. .. -..+..++++..|+. +-+++.++|-|-+..|||+.++.. +++..
T Consensus 115 lLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQL 192 (364)
T KOG0290|consen 115 LLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQL 192 (364)
T ss_pred hhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEE
Confidence 3443 4468999998742 111 11 134678999999985 567899999999999999998633 45555
Q ss_pred cCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCC-CCEEEEEcCC-CcEEE
Q 007855 466 EPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDGE-GKCWF 542 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~L~sgs~d-G~I~v 542 (587)
..|...|..++|...+ +.|++.+.||.|++||++....- ...+.+.........++|++. -+|+|+-..| ..|.|
T Consensus 193 IAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i 270 (364)
T KOG0290|consen 193 IAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI 270 (364)
T ss_pred EecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence 5799999999999855 68999999999999999875432 223333333566777899884 4577765554 46999
Q ss_pred EeCCC-CeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 543 WDWKS-CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 543 wd~~t-~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.|++. +..+..+++|.+.|++++|.|+..+.|.|||.|..+.|||
T Consensus 271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWD 316 (364)
T KOG0290|consen 271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWD 316 (364)
T ss_pred EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEe
Confidence 99986 5789999999999999999999999999999999999998
No 191
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=6e-14 Score=137.00 Aligned_cols=236 Identities=14% Similarity=0.222 Sum_probs=181.6
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC--CeEEEEECCCCc
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQ 373 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D--g~I~vWd~~t~~ 373 (587)
...|..+.|..+ ..+|..|+.|| .++|+...-.++... ......|.-+-|+.. +++..+.+ +.+++.++..+.
T Consensus 5 ~~ti~~~~~Nqd-~~~lsvGs~~G-yk~~~~~~~~k~~~~-~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~~ 79 (391)
T KOG2110|consen 5 KPTINFIGFNQD-STLLSVGSKDG-YKIFSCSPFEKCFSK-DTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKKT 79 (391)
T ss_pred Ccceeeeeeccc-eeEEEccCCCc-eeEEecCchHHhhcc-cCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccCc
Confidence 345777778877 78888899888 478887433342221 122334666667644 66655554 459999999999
Q ss_pred EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc---CCCCeeEEEEecCCCEEEEE--ECCC
Q 007855 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFVDNNRRFVTS--SDDK 448 (587)
Q Consensus 374 ~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~---h~~~I~~i~~sp~~~~l~s~--s~Dg 448 (587)
.+..+.....+.++.+... .|+++-.+ .|+|||+++.+++.++.. +...+.++.++..+.+++.- ...|
T Consensus 80 ~ICe~~fpt~IL~VrmNr~-----RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 80 TICEIFFPTSILAVRMNRK-----RLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred eEEEEecCCceEEEEEccc-----eEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCc
Confidence 9999999999888888763 35555544 499999999999887753 44556677777777777753 3468
Q ss_pred CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCe-EEEEEcCCceeecccceecccccccceEEEEEcCC
Q 007855 449 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 527 (587)
Q Consensus 449 ~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 527 (587)
.|.|||..+-+.+..+. .|.+.+.+++|+++|.+||++|..|+ |+||.+.++..+..+++ ......|.+++|+|+
T Consensus 154 dV~l~d~~nl~~v~~I~-aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR---G~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTIN-AHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR---GTYPVSIYSLSFSPD 229 (391)
T ss_pred eEEEEEcccceeeeEEE-ecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC---CceeeEEEEEEECCC
Confidence 89999999999988887 69999999999999999999999987 68999999877755443 233577889999999
Q ss_pred CCEEEEEcCCCcEEEEeCC
Q 007855 528 GRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 528 g~~L~sgs~dG~I~vwd~~ 546 (587)
+++|++.+..++|++|.+.
T Consensus 230 s~~L~~sS~TeTVHiFKL~ 248 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLE 248 (391)
T ss_pred CCeEEEecCCCeEEEEEec
Confidence 9999999999999999874
No 192
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=4e-16 Score=154.69 Aligned_cols=198 Identities=16% Similarity=0.316 Sum_probs=161.4
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee
Q 007855 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 379 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~ 379 (587)
.+++|+.+ |..|++|+.||++|||+. .....+.....|...|.+|.|+|||++|++.+.| ..+||++++|..+....
T Consensus 148 k~vaf~~~-gs~latgg~dg~lRv~~~-Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t 224 (398)
T KOG0771|consen 148 KVVAFNGD-GSKLATGGTDGTLRVWEW-PSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKT 224 (398)
T ss_pred eEEEEcCC-CCEeeeccccceEEEEec-CcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcC
Confidence 78899999 899999999999999998 5677777788899999999999999999999999 99999999997777665
Q ss_pred cCCc---ceEEEEccCCCCCcEEEEEe--CCCcEEEEeCCCCcE-----EEEEccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 380 TGKI---PYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEI-----TQEYDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 380 ~~~~---~~~~~~~~~~~~~~~l~sg~--~dg~I~iwD~~t~~~-----~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
.... ...+.|..++.+..+++++. .-+.|+.|++....- ..........|++++.+++|++++.|+.||.
T Consensus 225 ~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 225 PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCc
Confidence 3332 23566666665545555444 346677776643221 1111223458999999999999999999999
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
|.|++....+.+..+...|...|+.+.|+|+.++++..+.+..+.+..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999999999999999999999999999999999999999987653
No 193
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=6.6e-15 Score=146.09 Aligned_cols=196 Identities=18% Similarity=0.215 Sum_probs=148.7
Q ss_pred eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEe
Q 007855 385 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 385 ~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 464 (587)
.++++..++ ..+++|+.||++++|+..+...+.....|...|.++.|+|+++.|++.+.| ..+||+.+++..+...
T Consensus 148 k~vaf~~~g---s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~ 223 (398)
T KOG0771|consen 148 KVVAFNGDG---SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARK 223 (398)
T ss_pred eEEEEcCCC---CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhc
Confidence 567777754 479999999999999988888888888899999999999999999999999 9999999998666555
Q ss_pred e-cCCCcceeEEEEeCCC---CE--EEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC
Q 007855 465 S-EPHMHSMPSISLHPNT---NW--LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 538 (587)
Q Consensus 465 ~-~~~~~~i~~i~~sp~g---~~--l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG 538 (587)
. .........+.|+.++ .+ ++.....+.|+.|++.....-...+..+.......|.+++.|++|++++.|+.+|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dG 303 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDG 303 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCC
Confidence 4 2333446667777766 33 3333344667777654322111111111111124578899999999999999999
Q ss_pred cEEEEeCCCCeeEEEE-ecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 539 KCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 539 ~I~vwd~~t~~~~~~l-~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.|.|++..+.+++.-+ ++|...|+.+.|+| +.+++++.+.|..+.|
T Consensus 304 sVai~~~~~lq~~~~vk~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v 350 (398)
T KOG0771|consen 304 SVAIYDAKSLQRLQYVKEAHLGFVTGLTFSP-DSRYLASVSSDNEAAV 350 (398)
T ss_pred cEEEEEeceeeeeEeehhhheeeeeeEEEcC-CcCcccccccCCceeE
Confidence 9999999999887766 47999999999999 7778888888877655
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.67 E-value=1e-15 Score=155.00 Aligned_cols=209 Identities=18% Similarity=0.287 Sum_probs=165.7
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE-eecCCcceEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKIPYVV 387 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~-~~~~~~~~~~ 387 (587)
...|+.++.||.+.|.+- .++.-+.+..|.++|.+-.|+|+|.-|++++.||.|++|.- +|-...+ ......++|+
T Consensus 75 ~d~~~i~s~DGkf~il~k--~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNK--SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCA 151 (737)
T ss_pred cceEEEEcCCceEEEecc--cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEE
Confidence 457888899999999874 78888889999999999999999999999999999999984 4433333 3456678899
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 467 (587)
+|.|++. +++++.+ +.+.+=-+.....+..++.|.+-|.++.|++..+.+++|+.|-..+|||-....... ..+
T Consensus 152 ~W~p~S~--~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~--S~~ 225 (737)
T KOG1524|consen 152 RWAPNSN--SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT--SAA 225 (737)
T ss_pred EECCCCC--ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc--CCh
Confidence 9999765 4555544 566666676666677788999999999999999999999999999999976544332 347
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
|..+|++++|.|+ ..++.+|. ++++ +. .+..+.|..++||+||..+++|+..|.+.+-.
T Consensus 226 ~ey~ITSva~npd-~~~~v~S~-nt~R---------------~~-~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 226 EEYAITSVAFNPE-KDYLLWSY-NTAR---------------FS-SPRVGSIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred hccceeeeeeccc-cceeeeee-eeee---------------ec-CCCccceEEEEEcCCCceeeccccCceEEEee
Confidence 8999999999999 66666653 2233 11 12256788899999999999999999876643
No 195
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.67 E-value=1.1e-14 Score=139.69 Aligned_cols=247 Identities=19% Similarity=0.252 Sum_probs=187.2
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
+.|.--..+|+|.+|+++ +..+|.+.....|.||...... +..+++..|...|+.|+|+|..+.|++|+.|+.-.||
T Consensus 4 ~~~~~~~~pitchAwn~d-rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 4 VVFHRLLEPITCHAWNSD-RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred EEeeeccCceeeeeecCC-CceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 344445678999999999 8999999999999999884333 6788999999999999999999999999999999999
Q ss_pred ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 368 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
....+. +-+....+..+...++++.|+|.++.|++||.-
T Consensus 83 ~~~~~~-----------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVgSga 121 (361)
T KOG1523|consen 83 TQPSGG-----------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFAVGSGA 121 (361)
T ss_pred ccCCCC-----------------------------------------eeccceeEEEeccceeeEeecCcCceEEeccCc
Confidence 763211 111223344577899999999999999999999
Q ss_pred CCEEEEECCCCeE---EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce--------eecccce-----ec
Q 007855 448 KSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------QLNKKKR-----FA 511 (587)
Q Consensus 448 g~I~iwd~~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~--------~~~~~~~-----~~ 511 (587)
..|.||-+..... .+.+..+....|.++.|+|++-+|++|+.|+..++|+.--.. ....... ..
T Consensus 122 r~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 122 RLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred cEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence 9999998876543 345666788899999999999999999999999999742110 0000000 00
Q ss_pred ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-eEEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 512 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
.....+++..+.|+|+|..|+-.+.|+.+.+-|..... .+..+....-+..++.|.. +. .++.+|.|
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~is-e~-~vv~ag~~ 269 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWIS-EN-SVVAAGYD 269 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeec-CC-ceeecCCC
Confidence 11346889999999999999999999999999976654 3444444446778888875 32 35555555
No 196
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.66 E-value=3.4e-15 Score=140.98 Aligned_cols=215 Identities=18% Similarity=0.257 Sum_probs=167.5
Q ss_pred cccCCCceEEEEc-CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-----ccCCceeeEEEec--CC
Q 007855 281 HCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-----GHSKAVRDISFCN--DG 352 (587)
Q Consensus 281 ~~~~p~~~i~tl~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-----~h~~~V~~l~fs~--dg 352 (587)
..+.|..++..|. .|-+.|.||.|.|+ +..|++-. |..|.+|++....+.+..+. +|....++-+|+| +|
T Consensus 107 S~~~tlE~v~~Ldteavg~i~cvew~Pn-s~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdg 184 (370)
T KOG1007|consen 107 SNSSTLECVASLDTEAVGKINCVEWEPN-SDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDG 184 (370)
T ss_pred cccchhhHhhcCCHHHhCceeeEEEcCC-CCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCcc
Confidence 4566777788887 67779999999998 77777665 88999999955554343332 3566788899999 78
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEEccCCCCeeE
Q 007855 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNT 431 (587)
Q Consensus 353 ~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~~~I~~ 431 (587)
+.+++.+ |+++..||+++..+...+...+...+..+..++.++++|++|+.||.|++||++. ...++++.+|.-.|.+
T Consensus 185 nqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~ 263 (370)
T KOG1007|consen 185 NQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWA 263 (370)
T ss_pred ceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEE
Confidence 8887764 7999999999999988888766666656555667789999999999999999986 4678999999999999
Q ss_pred EEEecC-CCEEEEEECCCCEEEEECCCCe-----------------------------EEEEeecCCCcceeEEEEeCCC
Q 007855 432 ITFVDN-NRRFVTSSDDKSLRVWEFGIPV-----------------------------VIKYISEPHMHSMPSISLHPNT 481 (587)
Q Consensus 432 i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~-----------------------------~~~~~~~~~~~~i~~i~~sp~g 481 (587)
+.|+|. ..++++++.|..|.+|....-. .+.. ...|..+|.+++|+.-.
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t-ydehEDSVY~~aWSsad 342 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET-YDEHEDSVYALAWSSAD 342 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc-ccccccceEEEeeccCC
Confidence 999985 4568899999999999753211 0112 23478899999998755
Q ss_pred C-EEEEEECCCeEEEEEcC
Q 007855 482 N-WLAAQSLDNQILIYSTR 499 (587)
Q Consensus 482 ~-~l~~~s~dg~I~iwd~~ 499 (587)
. .||+-+.||.+.|=.+.
T Consensus 343 PWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 343 PWIFASLSYDGRVIISSVP 361 (370)
T ss_pred CeeEEEeccCceEEeecCC
Confidence 4 56777999999886553
No 197
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.65 E-value=4.3e-15 Score=143.51 Aligned_cols=256 Identities=15% Similarity=0.284 Sum_probs=180.7
Q ss_pred CceEEEEcCCCCCeEEEEEccC-CCcEEEEEeCCCeEEEEecCCCCee-eEEEcccC-CceeeEEEecCCCeEEEEe---
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGMDTKVKIWDVFNSGKC-MRTYMGHS-KAVRDISFCNDGTKFLTAS--- 359 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~-~g~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~-~~V~~l~fs~dg~~l~s~s--- 359 (587)
.+.+..+++|...++.++|... .++.+.+|+.||+|++||+....+. ...+..+. .+..|++.+..++.+++|.
T Consensus 60 g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~ 139 (376)
T KOG1188|consen 60 GQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELT 139 (376)
T ss_pred hhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccc
Confidence 4578899999999999999874 5899999999999999999544433 33344555 4667777776777777775
Q ss_pred -CCCeEEEEECCCCcE-EEEee--cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc----EEEEEccCCCCeeE
Q 007855 360 -YDKNIKYWDTETGQV-IRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----ITQEYDQHLGAVNT 431 (587)
Q Consensus 360 -~Dg~I~vWd~~t~~~-i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~----~~~~~~~h~~~I~~ 431 (587)
.+-.|.+||++..+. +..+. +...+.+++|+|..+ ++|++|+.||.|.+||+.... ++.++ .|...|.+
T Consensus 140 ~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~ 216 (376)
T KOG1188|consen 140 RSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHL 216 (376)
T ss_pred cCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchhhHHHhh-cccceeee
Confidence 367899999998876 66654 445677888888655 899999999999999997652 23333 47788999
Q ss_pred EEEecCC-CEEEEEECCCCEEEEECCCCeEEEEeecCCC-----------cceeEEEEeCCCCEEEEEEC-CCeEEEEEc
Q 007855 432 ITFVDNN-RRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-----------HSMPSISLHPNTNWLAAQSL-DNQILIYST 498 (587)
Q Consensus 432 i~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-----------~~i~~i~~sp~g~~l~~~s~-dg~I~iwd~ 498 (587)
+.|+.++ +.|.+-+...+..+|++..+.....+..+.. ..+...-...+...+++++. -|...++-+
T Consensus 217 igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~ 296 (376)
T KOG1188|consen 217 IGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPL 296 (376)
T ss_pred eeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEe
Confidence 9999766 4588888999999999988765544433211 01111111223445555444 555555543
Q ss_pred C---CceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 499 R---ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 499 ~---~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
. ++........+.++. ...|.++.|...+.++++|+.||.+.+|..
T Consensus 297 ~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 297 VDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred eecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 3 333344444455532 455677888888999999999999999985
No 198
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.63 E-value=3.5e-15 Score=139.39 Aligned_cols=278 Identities=15% Similarity=0.202 Sum_probs=187.8
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEc-CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM 333 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~ 333 (587)
.+.+...+.+.| +........+..|++...+....|+ .|+..|+.+.-.|+ ..|.+-+.|+.+.+|++ ..+..+
T Consensus 16 ~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw~i-a~s~~i 90 (323)
T KOG0322|consen 16 SVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILWTI-AYSAFI 90 (323)
T ss_pred hheehhhccchh--hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEEEc-cCcceE
Confidence 334444555556 4444455566678888888888898 67789999999987 56888999999999999 333322
Q ss_pred EEEcccCCceeeEEEecC-----CC----eEEEEeCCC-eEEEEECCCCcEEEEee---cC--CcceEEEEccCCCCCcE
Q 007855 334 RTYMGHSKAVRDISFCND-----GT----KFLTASYDK-NIKYWDTETGQVIRTFS---TG--KIPYVVKLNPDDDKQNI 398 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~d-----g~----~l~s~s~Dg-~I~vWd~~t~~~i~~~~---~~--~~~~~~~~~~~~~~~~~ 398 (587)
. -|+-.+.++.|.+. ++ .++.-+... .+.+-|......+.... .. ..+.+..+........+
T Consensus 91 ~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~l 167 (323)
T KOG0322|consen 91 S---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFL 167 (323)
T ss_pred E---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEE
Confidence 2 24445555555542 11 111111100 01111211111111111 11 22334443344445568
Q ss_pred EEEEeCCCcEEEEeCCCCcE----------EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC--e-EEEEee
Q 007855 399 LLAGMSDKKIVQWDMNTKEI----------TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP--V-VIKYIS 465 (587)
Q Consensus 399 l~sg~~dg~I~iwD~~t~~~----------~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~--~-~~~~~~ 465 (587)
+++|..+|.+.+||+.++.. +..+..|..+|.++.+.+.-..=++++.+..+..|+++.. . .+....
T Consensus 168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~ 247 (323)
T KOG0322|consen 168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI 247 (323)
T ss_pred EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence 88999999999999999733 3334569999999999987777788888889999988643 1 111222
Q ss_pred cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
......+..+.+-|+++.+|+++.|+.|+||+.++...+ ..+..| ...+.+++|+|+..++|+++.|++|.+|++
T Consensus 248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pL---AVLkyH--sagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPL---AVLKYH--SAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCch---hhhhhh--hcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 224456888999999999999999999999999876555 445556 467889999999999999999999999986
No 199
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.2e-14 Score=138.35 Aligned_cols=295 Identities=14% Similarity=0.177 Sum_probs=215.0
Q ss_pred ccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEE-cCCCCCeEEEEEccCCCcEEEEE
Q 007855 237 DKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTW-SGHTKGVSAIRFFPKYGHLILSA 315 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl-~gH~~~V~~l~~sp~~g~~L~sg 315 (587)
-.++-+.+....+.....|++++..|..+|.|....-- ....| ++|... ..|...|.||+|... ...|++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~------~~k~~-KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG 123 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM------VRKTP-KPIGVMEHPHRSNIFSLEFDLE-NRFLYSG 123 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHH------hhcCC-CCceeccCccccceEEEEEccC-CeeEecC
Confidence 34667778877777788999999999999999654311 11122 233333 346689999999988 8899999
Q ss_pred eCCCeEEEEecCCCCeeeEEEcc--cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc----EEEEeecCCcceEEEE
Q 007855 316 GMDTKVKIWDVFNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKL 389 (587)
Q Consensus 316 s~Dg~I~iWd~~~~~~~~~~~~~--h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~----~i~~~~~~~~~~~~~~ 389 (587)
+.+++|.+.|+ .+.+.+..+.. ..+.|..+..+|..+.|++.+.++.|.+||.+..+ ++.....+..-+.+.|
T Consensus 124 ~~~~~VI~HDi-Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F 202 (609)
T KOG4227|consen 124 ERWGTVIKHDI-ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEF 202 (609)
T ss_pred CCcceeEeeec-ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeee
Confidence 99999999999 67776666542 23589999999999999999999999999997654 3444445566677888
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEE------EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEE
Q 007855 390 NPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQE------YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK 462 (587)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~------~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 462 (587)
+|..+ .+|++.+..+-+-+||++.... +.. +......-.++.|+|+|+.|++--....-.+||+-...+..
T Consensus 203 ~P~~P--~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V 280 (609)
T KOG4227|consen 203 HPETP--ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFV 280 (609)
T ss_pred cCCCc--eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccccee
Confidence 88654 7899999999999999986531 111 12222334678999999999998877777888987755443
Q ss_pred EeecCC------CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce--------------------eecccceecccccc
Q 007855 463 YISEPH------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--------------------QLNKKKRFAGHIVA 516 (587)
Q Consensus 463 ~~~~~~------~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~--------------------~~~~~~~~~~~~~~ 516 (587)
...... ...|.+++|..+- .+++|+.+-.|++|.+.... .-..+..++|| .
T Consensus 281 ~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGH--R 357 (609)
T KOG4227|consen 281 LKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGH--R 357 (609)
T ss_pred EeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecc--c
Confidence 332211 1236677777554 49999999999999874210 11123345666 5
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
..+..+.|+|...+|++.+-...++||.-
T Consensus 358 Sv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 358 SVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred ccccceeecCCcceEeccchhhheecccc
Confidence 66788999999999999999999999964
No 200
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=5.9e-13 Score=138.47 Aligned_cols=276 Identities=18% Similarity=0.216 Sum_probs=180.3
Q ss_pred CcEE-EEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEE
Q 007855 309 GHLI-LSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 387 (587)
Q Consensus 309 g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~ 387 (587)
++++ ++-..++.|.|.|. .+.+.+..+......-..+.|++||+++++++.||.|.++|+.+++.+.++..+..+..+
T Consensus 5 ~~l~~V~~~~~~~v~viD~-~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDG-ATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp GGEEEEEEGGGTEEEEEET-TT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred ccEEEEEecCCCEEEEEEC-CCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 3455 45567899999999 788888888765544455789999999999999999999999999999999999999999
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC-------CCCeeEEEEecCCCEEEEEECC-CCEEEEECCCCe
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-------LGAVNTITFVDNNRRFVTSSDD-KSLRVWEFGIPV 459 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h-------~~~I~~i~~sp~~~~l~s~s~D-g~I~iwd~~~~~ 459 (587)
++++++. .++++....+.+.++|..+.+.++.+... ...+..|..++....++..-.| +.|.+.|+....
T Consensus 84 ~~s~DG~--~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~ 161 (369)
T PF02239_consen 84 AVSPDGK--YVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPK 161 (369)
T ss_dssp EE--TTT--EEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSS
T ss_pred EEcCCCC--EEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccc
Confidence 9998654 45555567899999999999998887532 3467888888888877766655 778888887654
Q ss_pred EEEEeecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccce-----------e----------cccc---
Q 007855 460 VIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKR-----------F----------AGHI--- 514 (587)
Q Consensus 460 ~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~-----------~----------~~~~--- 514 (587)
.+...............|+|+++|++++ ..++.|.++|..++........ + ..+.
T Consensus 162 ~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~ 241 (369)
T PF02239_consen 162 NLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYF 241 (369)
T ss_dssp CEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSS
T ss_pred ccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccce
Confidence 3332222344556788999999988775 4567888888776543322110 0 0000
Q ss_pred -------------------------cccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeeEEEEecCC-CCEEEE
Q 007855 515 -------------------------VAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHE-GVCIGC 564 (587)
Q Consensus 515 -------------------------~~~~i~~l~~spdg~~L~sg----s~dG~I~vwd~~t~~~~~~l~~h~-~~V~~v 564 (587)
..+.-.-+..+|++++|++. ...+.|.++|.++.+.+.++.... ..+..+
T Consensus 242 ~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ 321 (369)
T PF02239_consen 242 AIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHM 321 (369)
T ss_dssp EEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEE
T ss_pred ecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEecc
Confidence 00111236779999999987 456889999999998888875333 358999
Q ss_pred EEcCCCCCEEEEEECCC-cEEEcC
Q 007855 565 EWHPLEQSKVATCGWDG-LIKYWD 587 (587)
Q Consensus 565 ~~sp~~~~~l~s~g~DG-~I~iWD 587 (587)
.|++++....+|.-..+ .|.|||
T Consensus 322 ef~~dG~~v~vS~~~~~~~i~v~D 345 (369)
T PF02239_consen 322 EFNPDGKEVWVSVWDGNGAIVVYD 345 (369)
T ss_dssp EE-TTSSEEEEEEE--TTEEEEEE
T ss_pred EECCCCCEEEEEEecCCCEEEEEE
Confidence 99995544444444433 699886
No 201
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.62 E-value=3.6e-13 Score=143.86 Aligned_cols=235 Identities=12% Similarity=0.124 Sum_probs=162.5
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC---CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~---Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
..|.+||. .+...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++...............|+|++.
T Consensus 179 ~~l~~~d~--dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~- 255 (429)
T PRK03629 179 YELRVSDY--DGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS- 255 (429)
T ss_pred eeEEEEcC--CCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCC-
Confidence 47888887 34334445567778999999999999987653 3579999999887554443333344567888654
Q ss_pred CcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC-CC--EEEEECCCCeEEEEeecCCCc
Q 007855 396 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD-KS--LRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 396 ~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D-g~--I~iwd~~~~~~~~~~~~~~~~ 470 (587)
.++++...+| .|++||+.++...+. ..+...+....|+|+++.|+.++.+ +. |.++++..+.... +.. ...
T Consensus 256 -~La~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~-~~~ 331 (429)
T PRK03629 256 -KLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITW-EGS 331 (429)
T ss_pred -EEEEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eec-CCC
Confidence 4555555555 599999998876544 3445677899999999998877764 44 5555666654432 222 333
Q ss_pred ceeEEEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCc---EEEEe
Q 007855 471 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK---CWFWD 544 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~---I~vwd 544 (587)
......|+|+|++|+..+.+ ..|.+||+.++.... +... .......|+|||++|+.++.++. +.+++
T Consensus 332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~----Lt~~---~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~ 404 (429)
T PRK03629 332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV----LTDT---FLDETPSIAPNGTMVIYSSSQGMGSVLNLVS 404 (429)
T ss_pred CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----eCCC---CCCCCceECCCCCEEEEEEcCCCceEEEEEE
Confidence 45678999999999887654 358889987664321 1111 11224789999999998887764 67777
Q ss_pred CCCCeeEEEEecCCCCEEEEEEcC
Q 007855 545 WKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 545 ~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
+ +|.....+.+|.+.+...+|+|
T Consensus 405 ~-~G~~~~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 405 T-DGRFKARLPATDGQVKFPAWSP 427 (429)
T ss_pred C-CCCCeEECccCCCCcCCcccCC
Confidence 7 5666677888888899999998
No 202
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.4e-13 Score=147.66 Aligned_cols=275 Identities=16% Similarity=0.261 Sum_probs=192.6
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCC---CeEEEEeCCCeEEEEECCCCcEEEEe
Q 007855 302 IRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG---TKFLTASYDKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 302 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg---~~l~s~s~Dg~I~vWd~~t~~~i~~~ 378 (587)
-.|+++ ++.++.+. +.+|.||.+ .++.++..+.+|..+++.+.+.|.. .++++++.||.|++||...+..+.++
T Consensus 22 avfSnD-~k~l~~~~-~~~V~VyS~-~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~ 98 (792)
T KOG1963|consen 22 AVFSND-AKFLFLCT-GNFVKVYST-ATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTF 98 (792)
T ss_pred cccccC-CcEEEEee-CCEEEEEec-chHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEE
Confidence 347777 66666555 578999999 8999999999999999999998843 47789999999999999999999999
Q ss_pred ecCCcceEEEEccCCCC-CcEEEEEeCCCcEEE-EeCCCCcE-----EEE--------EccCCCCeeEEEEecCCCEEEE
Q 007855 379 STGKIPYVVKLNPDDDK-QNILLAGMSDKKIVQ-WDMNTKEI-----TQE--------YDQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 379 ~~~~~~~~~~~~~~~~~-~~~l~sg~~dg~I~i-wD~~t~~~-----~~~--------~~~h~~~I~~i~~sp~~~~l~s 443 (587)
.....+..+.+.+..-. ...+..+..+..+.. ........ +.+ +..|.. -.+|.+++.+.....
T Consensus 99 ~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i 177 (792)
T KOG1963|consen 99 DNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGI 177 (792)
T ss_pred ecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceEEEE
Confidence 88877766655332111 112222222222211 11111111 111 112222 466778877776655
Q ss_pred EECCCCEEEEECCCCe---EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC-ceeecccceecccccccce
Q 007855 444 SSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~i 519 (587)
.- +..+.+|...... ....+...|...+++.++||++++++++..||+|.+|.--. ...-.....+.=| ...|
T Consensus 178 ~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH--~~~V 254 (792)
T KOG1963|consen 178 VH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWH--HDEV 254 (792)
T ss_pred EE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEec--cccc
Confidence 55 4568888887643 11222334666789999999999999999999999996432 1111112233333 5678
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 520 ~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.+++|+++|.+|++|+..|.+.+|.+.+++ ..-+.--.++|..+.++| ++.+.+.+..|..|.+
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~-ds~~~sl~~~DNqI~l 318 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSP-DSDLYSLVLEDNQIHL 318 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcC-CCCeEEEEecCceEEE
Confidence 899999999999999999999999999988 555666788999999999 6667777777888765
No 203
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-13 Score=141.71 Aligned_cols=277 Identities=13% Similarity=0.145 Sum_probs=202.2
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc--CCceeeEEEecCCCeEEEEeCCCeEEEEECCC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTET 371 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t 371 (587)
+|....+.|..+|++.-+|+||..--.|++||+ ..-.+ .|.-| ...|.-.-.+.|-..++.-..|++|-+...-.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydl-anLSL--KFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G 125 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDL-ANLSL--KFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYG 125 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEc-cccee--eeeecccccceeEEEeccchhhheEeecCceeeehhhcC
Confidence 577788999999995556678888899999999 33222 22233 23344444555656666667788887765322
Q ss_pred CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEE
Q 007855 372 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 451 (587)
Q Consensus 372 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~ 451 (587)
....+..+.....++.+.... -|++++....|+-+++..|..+..+....+.+++|..++...+|++|+.+|.|-
T Consensus 126 --~hy~~RIP~~GRDm~y~~~sc---Dly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VE 200 (703)
T KOG2321|consen 126 --RHYRTRIPKFGRDMKYHKPSC---DLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVE 200 (703)
T ss_pred --eeeeeecCcCCccccccCCCc---cEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEE
Confidence 222233333333344433222 266666677899999999999999988889999999999999999999999999
Q ss_pred EEECCCCeEEEEeecCC----------CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEE
Q 007855 452 VWEFGIPVVIKYISEPH----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 452 iwd~~~~~~~~~~~~~~----------~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
+||.+....+..+.... ...|+++.|+.+|-.+++|+.+|.|.|||++...++. ...|.....|..
T Consensus 201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~----~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL----VKDHGYELPIKK 276 (703)
T ss_pred EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee----ecccCCccceee
Confidence 99998876655553221 2249999999999999999999999999999876553 344555677888
Q ss_pred EEEcCC--CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 522 VNFSPD--GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 522 l~~spd--g~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
+.|-+. +..|++.+ ...++|||-.+|+....+... ..++.+++.| ++.+++++-.++.+..
T Consensus 277 l~~~~~~~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p-~sGm~f~Ane~~~m~~ 339 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVSMD-KRILKIWDECTGKPMASIEPT-SDLNDFCFVP-GSGMFFTANESSKMHT 339 (703)
T ss_pred ecccccCCCceEEecc-hHHhhhcccccCCceeecccc-CCcCceeeec-CCceEEEecCCCccee
Confidence 999775 44555544 457999999999999888744 4489999999 7778999888776543
No 204
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.5e-12 Score=127.42 Aligned_cols=252 Identities=15% Similarity=0.251 Sum_probs=179.9
Q ss_pred CeEEEEEccCCCcEEEEEeCC--CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMD--TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~D--g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
.|--+-|+.. ++|..+.+ ..+++.+. +.+..+..+. ....|.+|.++.+ +|+++-.+ .|.|||+.+.+++
T Consensus 48 ~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~-Kk~~~ICe~~-fpt~IL~VrmNr~--RLvV~Lee-~IyIydI~~MklL 119 (391)
T KOG2110|consen 48 SIVEMLFSSS---LVAIVSIKQPRKLKVVHF-KKKTTICEIF-FPTSILAVRMNRK--RLVVCLEE-SIYIYDIKDMKLL 119 (391)
T ss_pred EEEEeecccc---eeEEEecCCCceEEEEEc-ccCceEEEEe-cCCceEEEEEccc--eEEEEEcc-cEEEEecccceee
Confidence 4555666644 66655544 45888888 4454444443 4567999999754 67777664 4999999999999
Q ss_pred EEeecC--CcceEEEEccCCCCCcEEEEEe-CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCC-EE
Q 007855 376 RTFSTG--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKS-LR 451 (587)
Q Consensus 376 ~~~~~~--~~~~~~~~~~~~~~~~~l~sg~-~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~-I~ 451 (587)
.++... .....++++++..+..+.+-++ ..|.|.+||+.+-+.+..+..|.+.+.+++|+++|.+|+++|+.|+ ||
T Consensus 120 hTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIR 199 (391)
T KOG2110|consen 120 HTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIR 199 (391)
T ss_pred hhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEE
Confidence 998765 4445788888765433333333 3589999999999999999999999999999999999999999997 79
Q ss_pred EEECCCCeEEEEeecCC-CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc-----c-----------------
Q 007855 452 VWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK-----K----------------- 508 (587)
Q Consensus 452 iwd~~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~-----~----------------- 508 (587)
||.+..+..+..+..+. ...|.+++|+|++++|++.+..++|++|.+........- .
T Consensus 200 Vf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~ 279 (391)
T KOG2110|consen 200 VFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQ 279 (391)
T ss_pred EEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchh
Confidence 99999999888886543 345889999999999999999999999987643210000 0
Q ss_pred ---------eecc-ccc-cc--ceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--CeeEEEEecC
Q 007855 509 ---------RFAG-HIV-AG--YACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKVFRTLKCH 557 (587)
Q Consensus 509 ---------~~~~-~~~-~~--~i~~l~~spdg~~L~sgs~dG~I~vwd~~t--~~~~~~l~~h 557 (587)
.|.. +.. .+ .++.+.-.+...++..++.||.++.|.+.. |.....++.|
T Consensus 280 V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~~gGec~lik~h 343 (391)
T KOG2110|consen 280 VSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPKEGGECALIKRH 343 (391)
T ss_pred hhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCCCCceeEEEEee
Confidence 0000 000 11 222222234778999999999999998753 4444445444
No 205
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.60 E-value=1.6e-14 Score=148.66 Aligned_cols=231 Identities=16% Similarity=0.225 Sum_probs=165.0
Q ss_pred EeCCCeEEEEecCCCCeeeEEEc---ccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcE-------EEEee-cCC
Q 007855 315 AGMDTKVKIWDVFNSGKCMRTYM---GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQV-------IRTFS-TGK 382 (587)
Q Consensus 315 gs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~-------i~~~~-~~~ 382 (587)
++.-|.|-||++...+++--... .....|+++.|.| |...|++++.||.|+||.+..+.. ...+. +..
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~e 678 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGE 678 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccc
Confidence 45579999999976665432221 2456799999999 888999999999999999876532 22233 345
Q ss_pred cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEE-
Q 007855 383 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVI- 461 (587)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~- 461 (587)
.++.+.|+|... ++|++++.|.+|.+||++++.....+.+|.+.|.+++|+|+|+++++.+.||+|++|..+.....
T Consensus 679 KI~slRfHPLAa--dvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv 756 (1012)
T KOG1445|consen 679 KITSLRFHPLAA--DVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPV 756 (1012)
T ss_pred eEEEEEecchhh--hHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCcc
Confidence 667888888654 68999999999999999999999999999999999999999999999999999999998876433
Q ss_pred EEeecCCCcceeEEEEeCCCCEEEEEECC----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEEcC
Q 007855 462 KYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDG 536 (587)
Q Consensus 462 ~~~~~~~~~~i~~i~~sp~g~~l~~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sgs~ 536 (587)
..-..+....--.|.|.-+|.++++.+.| .+|.+|+...-.. ..+....-.. ...+.--.+.+|.. ++++|-.
T Consensus 757 ~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDv-aps~LvP~YD~Ds~~lfltGKG 834 (1012)
T KOG1445|consen 757 YEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDV-APSPLVPHYDYDSNVLFLTGKG 834 (1012)
T ss_pred ccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-Ccceeeeecc-cCccccccccCCCceEEEecCC
Confidence 22222333344567888899999888766 5688888654210 0000000000 00011122344544 5678889
Q ss_pred CCcEEEEeCCCCe
Q 007855 537 EGKCWFWDWKSCK 549 (587)
Q Consensus 537 dG~I~vwd~~t~~ 549 (587)
|..|.+|.+-.-.
T Consensus 835 D~~v~~yEv~~es 847 (1012)
T KOG1445|consen 835 DRFVNMYEVIYES 847 (1012)
T ss_pred CceEEEEEecCCC
Confidence 9999999985543
No 206
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.59 E-value=1e-13 Score=140.87 Aligned_cols=218 Identities=17% Similarity=0.260 Sum_probs=153.5
Q ss_pred eeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE-----EEeecCCcceEEEEc--cCCCCCcEEEEEeCCCcEEEEeCCC
Q 007855 343 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVI-----RTFSTGKIPYVVKLN--PDDDKQNILLAGMSDKKIVQWDMNT 415 (587)
Q Consensus 343 V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i-----~~~~~~~~~~~~~~~--~~~~~~~~l~sg~~dg~I~iwD~~t 415 (587)
++...++-.|.+|+..- ...+.+|+...+..+ +.+-.+..+.|..|. ....++.-+++|...|.|.+.|...
T Consensus 126 ~~~~~~~~~gd~lcFnv-g~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~~ 204 (636)
T KOG2394|consen 126 VTNTNQSGKGDRLCFNV-GRELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPIN 204 (636)
T ss_pred eeeccccCCCCEEEEec-CCeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecchh
Confidence 33444444555554432 246777877643221 223334455566663 3333455689999999999999876
Q ss_pred CcEEEEEc----cCCCCeeEEEEecCC-CEEEEEECCCCEEEEECCCC--------------e--------------EEE
Q 007855 416 KEITQEYD----QHLGAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIP--------------V--------------VIK 462 (587)
Q Consensus 416 ~~~~~~~~----~h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~--------------~--------------~~~ 462 (587)
.+....+. .....|+||.|.|.+ ..|+++-.+|.+++||.... . ++.
T Consensus 205 ~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~ 284 (636)
T KOG2394|consen 205 FEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA 284 (636)
T ss_pred hHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc
Confidence 43322221 134789999999854 45777788999999975321 0 000
Q ss_pred EeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 463 YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 463 ~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
.+. .....|..++|+|+|++||+.+.||.++||+..+...+...+.+- +...|++|||||+||++|+.|-.|.|
T Consensus 285 ~w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GGLLCvcWSPDGKyIvtGGEDDLVtV 358 (636)
T KOG2394|consen 285 RWH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GGLLCVCWSPDGKYIVTGGEDDLVTV 358 (636)
T ss_pred eeE-eccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cceEEEEEcCCccEEEecCCcceEEE
Confidence 111 123478889999999999999999999999998765554444433 44667999999999999999999999
Q ss_pred EeCCCCeeEEEEecCCCCEEEEEEc
Q 007855 543 WDWKSCKVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 543 wd~~t~~~~~~l~~h~~~V~~v~~s 567 (587)
|.+..++.+..-++|...|..++|.
T Consensus 359 wSf~erRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 359 WSFEERRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEeccceEEEeccccccceeeEeec
Confidence 9999999999999999999999998
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.59 E-value=1.9e-13 Score=150.48 Aligned_cols=254 Identities=18% Similarity=0.253 Sum_probs=177.1
Q ss_pred EecCCCCeeeEEEcccCCceeeEEEecCC-CeEEEEeCCCeEEEEECCCC-------cEEEEee-cCCcceEEEEccCCC
Q 007855 324 WDVFNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETG-------QVIRTFS-TGKIPYVVKLNPDDD 394 (587)
Q Consensus 324 Wd~~~~~~~~~~~~~h~~~V~~l~fs~dg-~~l~s~s~Dg~I~vWd~~t~-------~~i~~~~-~~~~~~~~~~~~~~~ 394 (587)
|+. .|..+..+..|+..|..++.++.. .+|+|||.||+|++|++..- +...++. .+....++.+.+.+
T Consensus 1034 W~p--~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~- 1110 (1431)
T KOG1240|consen 1034 WNP--RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG- 1110 (1431)
T ss_pred CCc--cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-
Confidence 776 788999999999999999998854 99999999999999998632 2333444 55666677777755
Q ss_pred CCcEEEEEeCCCcEEEEeCCCC--c-----EEEEEccC-CCCeeE-EEEec-CC-CEEEEEECCCCEEEEECCCCeEEEE
Q 007855 395 KQNILLAGMSDKKIVQWDMNTK--E-----ITQEYDQH-LGAVNT-ITFVD-NN-RRFVTSSDDKSLRVWEFGIPVVIKY 463 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~--~-----~~~~~~~h-~~~I~~-i~~sp-~~-~~l~s~s~Dg~I~iwd~~~~~~~~~ 463 (587)
+.+++++.||.|.+.++... . .......+ .+.+.+ -+|.. .. ..++.+..-+.|..||++.......
T Consensus 1111 --~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1111 --DQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred --CeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 46999999999999998752 1 11111112 233333 33332 22 3688888899999999988765544
Q ss_pred eec-CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC---CCCEEEEEc--CC
Q 007855 464 ISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGD--GE 537 (587)
Q Consensus 464 ~~~-~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~L~sgs--~d 537 (587)
+.. ...+.|++++.+|.++++++|+..|.+.+||++=+..+.... |.....+..+..+| ...++++++ ..
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~----~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWE----HPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeeccc----CcccCCcceEEeeccCCCCceEEEecccCC
Confidence 432 345679999999999999999999999999998655443222 12235555566555 334555444 57
Q ss_pred CcEEEEeCCCCeeEEEEecCC-------------------CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 538 GKCWFWDWKSCKVFRTLKCHE-------------------GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 538 G~I~vwd~~t~~~~~~l~~h~-------------------~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.|.+|++.+|.+-..+.... -....+.+.. .+..+++||.|+.|+.||
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~-~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCE-KNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeeccc-CCceeeecCCccceeecc
Confidence 789999999987666654331 1122233333 566899999999999998
No 208
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.58 E-value=2.8e-14 Score=145.04 Aligned_cols=218 Identities=23% Similarity=0.403 Sum_probs=164.3
Q ss_pred EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc--eEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
..+.||.+.|.|+.|+.+|.+|++||.|-.+.|||.-..+++..+..++.. .++.|.|.. +..++++|..|..|++|
T Consensus 44 ~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEeccCcceEEEE
Confidence 457899999999999999999999999999999999999999999888764 577788875 34789999999999999
Q ss_pred eCCC----------CcEEEEEccCCCCeeEEEEecCC-CEEEEEECCCCEEEEECCCCeEEEEee---------cCCCcc
Q 007855 412 DMNT----------KEITQEYDQHLGAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIPVVIKYIS---------EPHMHS 471 (587)
Q Consensus 412 D~~t----------~~~~~~~~~h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~---------~~~~~~ 471 (587)
|+.. .+....+..|...|..|+..|++ ..|.+++.||+|+-+|++.+.....-. .+..-.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9984 23455567899999999999988 789999999999999998743221110 112234
Q ss_pred eeEEEEeCC-CCEEEEEECCCeEEEEEcCCceee--------cc-------c-ceecccc-c-----ccc---eEEEEEc
Q 007855 472 MPSISLHPN-TNWLAAQSLDNQILIYSTRERFQL--------NK-------K-KRFAGHI-V-----AGY---ACQVNFS 525 (587)
Q Consensus 472 i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~~~--------~~-------~-~~~~~~~-~-----~~~---i~~l~~s 525 (587)
..++.++|. ..+|++|+.|-..++||.+...+. .. . .-..+|. . ... ++-++|+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfn 282 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFN 282 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEEC
Confidence 678899995 468999999999999995321100 00 0 0111222 1 111 4558899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 526 PDGRFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 526 pdg~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
|+|.-|+..-..-.|+++|+..++...
T Consensus 283 pNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 283 PNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred CCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 999877776666689999998776543
No 209
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.2e-13 Score=142.52 Aligned_cols=235 Identities=18% Similarity=0.204 Sum_probs=162.1
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
..|.+||. .+...+.+..+...+.+.+|+|||+.|+.++.. ..|.+||+.+++...............|+|++.
T Consensus 184 ~~l~i~D~--~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~- 260 (433)
T PRK04922 184 YALQVADS--DGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSPDGR- 260 (433)
T ss_pred EEEEEECC--CCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECCCCC-
Confidence 46889987 344455566777889999999999999988754 469999999887654433333344567777553
Q ss_pred CcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CCC--EEEEECCCCeEEEEeecCCCc
Q 007855 396 QNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DKS--LRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 396 ~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~ 470 (587)
.++++.+.+| .|++||+.+++.. .+..+.......+|+|+++.|+.++. +|. |+++++..+....... ...
T Consensus 261 -~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~--~g~ 336 (433)
T PRK04922 261 -RLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTF--QGN 336 (433)
T ss_pred -EEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeec--CCC
Confidence 4556666665 5999999988754 34455555678999999999888774 444 6677776655433221 223
Q ss_pred ceeEEEEeCCCCEEEEEECCC---eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC---CcEEEEe
Q 007855 471 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWD 544 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d---G~I~vwd 544 (587)
....++|+|+|++|+..+.++ .|.+|++.++... .+. .+ .......|+|||++|+..+.+ +.|++++
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~----~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~ 409 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PG----SLDESPSFAPNGSMVLYATREGGRGVLAAVS 409 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC--CC----CCCCCceECCCCCEEEEEEecCCceEEEEEE
Confidence 345689999999998876543 6999998765432 111 11 122347899999988766543 4588888
Q ss_pred CCCCeeEEEEecCCCCEEEEEEcC
Q 007855 545 WKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 545 ~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
+. +.....+..+.+.+...+|+|
T Consensus 410 ~~-g~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 410 TD-GRVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-CCceEEcccCCCCCCCCccCC
Confidence 84 445666666777788888987
No 210
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=2.7e-12 Score=123.32 Aligned_cols=178 Identities=16% Similarity=0.315 Sum_probs=142.4
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC-CCcEEEEeecCC-cceEEEEccCCCCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTGK-IPYVVKLNPDDDKQ 396 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~-t~~~i~~~~~~~-~~~~~~~~~~~~~~ 396 (587)
..|.|||= ...+++..+. ...+|.+|.+.++ +|++.- .+.|.||... ..+.++.+.... +...+++.+.....
T Consensus 75 NkviIWDD-~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~ 149 (346)
T KOG2111|consen 75 NKVIIWDD-LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKS 149 (346)
T ss_pred ceEEEEec-ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCce
Confidence 57999995 5666766664 6678999999876 566554 5789999987 557777776555 33355666655544
Q ss_pred cEEEEEeCCCcEEEEeCCCCcE--EEEEccCCCCeeEEEEecCCCEEEEEECCCC-EEEEECCCCeEEEEeecCC-Ccce
Q 007855 397 NILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDNNRRFVTSSDDKS-LRVWEFGIPVVIKYISEPH-MHSM 472 (587)
Q Consensus 397 ~~l~sg~~dg~I~iwD~~t~~~--~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~-I~iwd~~~~~~~~~~~~~~-~~~i 472 (587)
-+.+-|-.-|.|.+-|+...+. ...+..|.+.|.|++++-+|..++++|..|+ |||||..++..+..+..+. ...|
T Consensus 150 ~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~i 229 (346)
T KOG2111|consen 150 LLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADI 229 (346)
T ss_pred EEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheE
Confidence 4444466779999999987665 4778899999999999999999999999997 8999999999998887644 4469
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEEcCCc
Q 007855 473 PSISLHPNTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
.+|+|+|+..+|+++|..|+|.||.++..
T Consensus 230 y~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 230 YCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999999999999999999998763
No 211
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.56 E-value=6.3e-12 Score=120.85 Aligned_cols=270 Identities=13% Similarity=0.171 Sum_probs=180.2
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC--ceeeEEEecCCCeEE-EEeCC------CeEEEEEC
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK--AVRDISFCNDGTKFL-TASYD------KNIKYWDT 369 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~--~V~~l~fs~dg~~l~-s~s~D------g~I~vWd~ 369 (587)
..+++|+.+ ...++.|..+| .+||+.. .-+.......+.. .+..|-| ..++|+ +|+.+ ..|.|||=
T Consensus 8 ~lsvs~NQD-~ScFava~~~G-friyn~~-P~ke~~~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 8 TLSVSFNQD-HSCFAVATDTG-FRIYNCD-PFKESASRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred eeEEEEccC-CceEEEEecCc-eEEEecC-chhhhhhhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEEec
Confidence 344889888 66777776655 7999983 3222111111222 2333333 234554 34333 47999998
Q ss_pred CCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC-CCcEEEEEccCC--CCeeEEEEecCCCEEEE-EE
Q 007855 370 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHL--GAVNTITFVDNNRRFVT-SS 445 (587)
Q Consensus 370 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-t~~~~~~~~~h~--~~I~~i~~sp~~~~l~s-~s 445 (587)
....++..+.....+..+.+..+ .+++ -..+.|.+|... ..+.++.+.... ..+.+++-..+...|+. |-
T Consensus 83 ~k~~~i~el~f~~~I~~V~l~r~-----riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELSFNSEIKAVKLRRD-----RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEEeccceeeEEEcCC-----eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 88889999998888888888764 2333 346899999987 445555554322 23333333333333333 34
Q ss_pred CCCCEEEEECCCCeE-EEEeecCCCcceeEEEEeCCCCEEEEEECCCe-EEEEEcCCceeecccceecccccccceEEEE
Q 007855 446 DDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 523 (587)
.-|.|.|-|+..... ...+...|...|.|++++-+|..+|++|..|+ |+|||..++..+...+.-.. ...|.+++
T Consensus 157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d---~A~iy~ia 233 (346)
T KOG2111|consen 157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVD---RADIYCIA 233 (346)
T ss_pred ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCc---hheEEEEE
Confidence 568999999976655 22334479999999999999999999999987 79999999988766554333 36788999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCe---e---------------------EEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 524 FSPDGRFVMSGDGEGKCWFWDWKSCK---V---------------------FRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 524 ~spdg~~L~sgs~dG~I~vwd~~t~~---~---------------------~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
|||++.+|++.+..|+|+||.++... . +..+....+...-++|-. +...++..+.
T Consensus 234 FSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~-~~nsvi~i~~ 312 (346)
T KOG2111|consen 234 FSPNSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGS-ETNTVIAICA 312 (346)
T ss_pred eCCCccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecC-CCCeEEEEEe
Confidence 99999999999999999999885422 1 122233345556677776 4456777777
Q ss_pred CCcE
Q 007855 580 DGLI 583 (587)
Q Consensus 580 DG~I 583 (587)
||.-
T Consensus 313 Dgsy 316 (346)
T KOG2111|consen 313 DGSY 316 (346)
T ss_pred CCcE
Confidence 7764
No 212
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.56 E-value=3.1e-13 Score=132.93 Aligned_cols=262 Identities=14% Similarity=0.188 Sum_probs=189.7
Q ss_pred CCCeEEEEEccCC-CcEEEEEeCCCeEEEEecCCCCeeeE------EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 296 TKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVFNSGKCMR------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 296 ~~~V~~l~~sp~~-g~~L~sgs~Dg~I~iWd~~~~~~~~~------~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
...|+.++|--++ ...|..++.+..+..+.+ ....+.. +......+|..+.... ..|++|-.+|.+.+|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~-~E~~~~s~~~~~~~~~l~~~~I~gl~~~d--g~Litc~~sG~l~~~~ 131 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVI-EEFEISSSLDDAKTVSLGTKSIKGLKLAD--GTLITCVSSGNLQVRH 131 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccc-cCCccccccccccccccccccccchhhcC--CEEEEEecCCcEEEEe
Confidence 3457777776552 335555557777777776 3333332 3345567777777653 3788888899999999
Q ss_pred CCCCc----EEEEeecCCcceEEEEccCCCCCcEEEEEeCC--CcEEEEeCCCCcEEEEEcc---------CCCCeeEEE
Q 007855 369 TETGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQ---------HLGAVNTIT 433 (587)
Q Consensus 369 ~~t~~----~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwD~~t~~~~~~~~~---------h~~~I~~i~ 433 (587)
...+. .+..+..+.....+.-.+ ...+++++|+.. ..+.+||+.+.+.+.+-+. -.-.++++.
T Consensus 132 ~k~~d~hss~l~~la~g~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~ 209 (412)
T KOG3881|consen 132 DKSGDLHSSKLIKLATGPGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIR 209 (412)
T ss_pred ccCCccccccceeeecCCceeeeccCC--CCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccce
Confidence 88543 344445554444444444 444788889998 8999999998865544322 123578899
Q ss_pred EecC--CCEEEEEECCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee
Q 007855 434 FVDN--NRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF 510 (587)
Q Consensus 434 ~sp~--~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~ 510 (587)
|.+. ...|++++.-+.|++||.+.++ ++..+ .-...+++++...|++++|++|..-+.+..||++.+..+.. .+
T Consensus 210 Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~--~~ 286 (412)
T KOG3881|consen 210 FLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC--GL 286 (412)
T ss_pred ecCCCCCceEEEEecceeEEEecCcccCcceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCceeecc--cc
Confidence 9987 8899999999999999998754 44444 34678999999999999999999999999999998766533 23
Q ss_pred cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 511 ~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
.+. .+.+.++..+|.+++|++++-|..|+|+|+++.+++..... ...++++.+.+
T Consensus 287 kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv-Ks~lt~il~~~ 341 (412)
T KOG3881|consen 287 KGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV-KSRLTFILLRD 341 (412)
T ss_pred CCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh-hccccEEEecC
Confidence 333 56688899999999999999999999999999777655432 23456666654
No 213
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=1.2e-12 Score=139.91 Aligned_cols=235 Identities=15% Similarity=0.175 Sum_probs=158.7
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
..|.+||. .+...+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 176 ~~L~~~D~--dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 252 (427)
T PRK02889 176 YQLQISDA--DGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGR- 252 (427)
T ss_pred cEEEEECC--CCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC-
Confidence 45666775 555556666788899999999999999887753 459999999987654433334445677887654
Q ss_pred CcEEEEEeCCCcEEEE--eCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CCCEEEEEC--CCCeEEEEeecCCCc
Q 007855 396 QNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DKSLRVWEF--GIPVVIKYISEPHMH 470 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iw--D~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg~I~iwd~--~~~~~~~~~~~~~~~ 470 (587)
.++++.+.+|...+| |+.++. ...+..+...+....|+|+|+.|+.++. ++...||.+ ..+...... . ...
T Consensus 253 -~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~-~g~ 328 (427)
T PRK02889 253 -TLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-F-TGS 328 (427)
T ss_pred -EEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-c-CCC
Confidence 455567777765555 555554 4445556666678899999998887664 456666654 444332222 1 222
Q ss_pred ceeEEEEeCCCCEEEEEECCC---eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC---cEEEEe
Q 007855 471 SMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWD 544 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG---~I~vwd 544 (587)
......|+|+|++|+..+.++ .|.+||+.++.... + ... .......|+|||++|+..+.++ .+.+.+
T Consensus 329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~-l---t~~---~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~ 401 (427)
T PRK02889 329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA-L---TDT---TRDESPSFAPNGRYILYATQQGGRSVLAAVS 401 (427)
T ss_pred CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE-c---cCC---CCccCceECCCCCEEEEEEecCCCEEEEEEE
Confidence 344678999999999877654 69999987764321 1 111 1223579999999988776543 366666
Q ss_pred CCCCeeEEEEecCCCCEEEEEEcC
Q 007855 545 WKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 545 ~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
+ ++.....+..+.+.+...+|+|
T Consensus 402 ~-~g~~~~~l~~~~g~~~~p~wsp 424 (427)
T PRK02889 402 S-DGRIKQRLSVQGGDVREPSWGP 424 (427)
T ss_pred C-CCCceEEeecCCCCCCCCccCC
Confidence 6 5666677777778888889988
No 214
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.5e-13 Score=132.08 Aligned_cols=273 Identities=15% Similarity=0.253 Sum_probs=184.3
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeE-EEEeCCCeEEEEECCCCcEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l-~s~s~Dg~I~vWd~~t~~~i 375 (587)
..|.-|.|..+.-..|.....++.|.+|++ ...+-...+.....++..++|||+|+.| .+...+-.|.||.+.+.+..
T Consensus 49 dki~yieW~ads~~ilC~~yk~~~vqvwsl-~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~ 127 (447)
T KOG4497|consen 49 DKIVYIEWKADSCHILCVAYKDPKVQVWSL-VQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY 127 (447)
T ss_pred HHhhheeeeccceeeeeeeeccceEEEEEe-ecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE
Confidence 457788898886777788899999999999 5666666777788899999999999655 56677999999999998877
Q ss_pred EEeecCCcceEEEEccCCCCCcEEEEEeCCC---cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEE
Q 007855 376 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
..-........++|++++. +.+..+.-. .+.+.....-.++..+.-..-..+.|.|+|+|+.|++
T Consensus 128 ~~~~pK~~~kg~~f~~dg~---f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV--------- 195 (447)
T KOG4497|consen 128 LLPHPKTNVKGYAFHPDGQ---FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV--------- 195 (447)
T ss_pred EecccccCceeEEECCCCc---eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE---------
Confidence 6665566667888888764 333333221 1222222233455566666677889999999987664
Q ss_pred EECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc----------------ce-------
Q 007855 453 WEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK----------------KR------- 509 (587)
Q Consensus 453 wd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~----------------~~------- 509 (587)
||---.-.+... ...-.+..+.|+|.+++|++|+.|+.+++.+--+-...... ..
T Consensus 196 wd~~Leykv~aY--e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~ 273 (447)
T KOG4497|consen 196 WDNVLEYKVYAY--ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLL 273 (447)
T ss_pred ecchhhheeeee--eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhc
Confidence 442211111111 23346788999999999999999998887542211000000 00
Q ss_pred ----------------------------------ec---c-cccccceEEEEEcCCCCEEEEEcCC--CcEEEEeCCCCe
Q 007855 510 ----------------------------------FA---G-HIVAGYACQVNFSPDGRFVMSGDGE--GKCWFWDWKSCK 549 (587)
Q Consensus 510 ----------------------------------~~---~-~~~~~~i~~l~~spdg~~L~sgs~d--G~I~vwd~~t~~ 549 (587)
++ . ......+..++||+|..|+++-.+. ..+.+||++..+
T Consensus 274 ~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~ 353 (447)
T KOG4497|consen 274 HHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK 353 (447)
T ss_pred ccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh
Confidence 00 0 0001234458999999999987653 569999998877
Q ss_pred eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 550 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 550 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+...+. ...+|....|+| +...|+.|.....+.+|
T Consensus 354 l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W 388 (447)
T KOG4497|consen 354 LHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFW 388 (447)
T ss_pred hhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEE
Confidence 655553 556899999999 44556666556678887
No 215
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.55 E-value=1.6e-14 Score=144.41 Aligned_cols=257 Identities=17% Similarity=0.227 Sum_probs=201.7
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
-+-..+.++.+ |..|+.|+.-|.|-.+|. .++++...+. -...|.++.|..+.++|+++ ....+.|||- .|..++
T Consensus 130 FGPY~~~ytrn-GrhlllgGrKGHlAa~Dw-~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~-~GtElH 204 (545)
T KOG1272|consen 130 FGPYHLDYTRN-GRHLLLGGRKGHLAAFDW-VTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN-NGTELH 204 (545)
T ss_pred cCCeeeeecCC-ccEEEecCCccceeeeec-ccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC-CCcEEe
Confidence 35667888888 889999999999999999 6777766654 45679999999888877776 4578999995 577778
Q ss_pred EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECC
Q 007855 377 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~ 456 (587)
.+.......-+.|.|.. .+|++++..|.+..-|+.+|+++..+....+.+..++-+|-+..+-+|...|+|.+|...
T Consensus 205 Clk~~~~v~rLeFLPyH---fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ 281 (545)
T KOG1272|consen 205 CLKRHIRVARLEFLPYH---FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN 281 (545)
T ss_pred ehhhcCchhhhcccchh---heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence 88777777778888864 478888899999999999999999998889999999999999999999999999999999
Q ss_pred CCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC
Q 007855 457 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 457 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
...++..+.. |.++|.++++.++|.|+++.+.|..|+|||++....+..... ...+..++||..| +||.+-.
T Consensus 282 skePLvKiLc-H~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t------p~~a~~ls~Sqkg-lLA~~~G 353 (545)
T KOG1272|consen 282 SKEPLVKILC-HRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT------PHPASNLSLSQKG-LLALSYG 353 (545)
T ss_pred CcchHHHHHh-cCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec------CCCcccccccccc-ceeeecC
Confidence 8888777654 999999999999999999999999999999998665433332 1233457888766 4444443
Q ss_pred CCcEEEEeC-CC--CeeEEEEecC--CCCEEEEEEcCCC
Q 007855 537 EGKCWFWDW-KS--CKVFRTLKCH--EGVCIGCEWHPLE 570 (587)
Q Consensus 537 dG~I~vwd~-~t--~~~~~~l~~h--~~~V~~v~~sp~~ 570 (587)
..|.||.- -. +......-.| .++|..+.|.|.+
T Consensus 354 -~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 354 -DHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred -CeeeeehhhhcCCCCCCcchhhhccCcccccceeccHH
Confidence 37899952 22 1221222223 2488999999843
No 216
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.55 E-value=4.8e-12 Score=135.82 Aligned_cols=234 Identities=17% Similarity=0.176 Sum_probs=160.9
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC---CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~---Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
..|.+||. .+...+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++...............|+|++.
T Consensus 182 ~~l~~~d~--dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~- 258 (435)
T PRK05137 182 KRLAIMDQ--DGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGR- 258 (435)
T ss_pred eEEEEECC--CCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCC-
Confidence 47888887 45555667778889999999999999988764 4689999999887654433344445667777553
Q ss_pred CcEEEEEeCCCc--EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CC--CEEEEECCCCeEEEEeecCCCc
Q 007855 396 QNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 396 ~~~l~sg~~dg~--I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
.++++.+.++. |++||+.++... .+..+........|+|+++.|+.++. +| .|++||+..+.... +.. ...
T Consensus 259 -~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~-~~~ 334 (435)
T PRK05137 259 -KVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISF-GGG 334 (435)
T ss_pred -EEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eec-CCC
Confidence 45666666654 788899887654 45556666788999999999888774 33 58888887665433 322 234
Q ss_pred ceeEEEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC------CcEE
Q 007855 471 SMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE------GKCW 541 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d------G~I~ 541 (587)
.+....|+|+|++|+..+.+ ..|.+|++.++... ... .+ ..+..+.|+|||++|+..+.+ ..|+
T Consensus 335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt--~~----~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~ 407 (435)
T PRK05137 335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILT--SG----FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLY 407 (435)
T ss_pred cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceE-ecc--CC----CCCCCCeECCCCCEEEEEEccCCCCCcceEE
Confidence 46678899999999887654 36888887554321 111 11 123458999999998765432 3588
Q ss_pred EEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 542 FWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 542 vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
++|+..+.. ..+. ..+.+...+|+|
T Consensus 408 ~~dl~g~~~-~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 408 TVDLTGRNE-REVP-TPGDASDPAWSP 432 (435)
T ss_pred EEECCCCce-EEcc-CCCCccCcccCC
Confidence 888866554 4444 344567778887
No 217
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.54 E-value=1.6e-12 Score=126.71 Aligned_cols=242 Identities=20% Similarity=0.313 Sum_probs=162.0
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-------------EEEcccCCceeeEEEecCCCeEEEEeC-C
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-------------RTYMGHSKAVRDISFCNDGTKFLTASY-D 361 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-------------~~~~~h~~~V~~l~fs~dg~~l~s~s~-D 361 (587)
...|+|++|-|.++.-|+.|+.. -|.||....+...- ....+| ..|++|.|++||..|++++. |
T Consensus 140 QrnvtclawRPlsaselavgCr~-gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gs 217 (445)
T KOG2139|consen 140 QRNVTCLAWRPLSASELAVGCRA-GICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGS 217 (445)
T ss_pred hcceeEEEeccCCcceeeeeecc-eeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCc
Confidence 35799999999988888888875 48999874333221 122345 68999999999999999987 5
Q ss_pred CeEEEEECCCCcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 362 KNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
..|.|||..++..+.... .......+.|+|+++ .|+++..|+..++|............-..+.|...+|+|+|++
T Consensus 218 ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd---~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 218 SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD---VLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSF 294 (445)
T ss_pred ceEEEEcCCCCCcccccccCCCceeeEEEcCCCC---EEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCE
Confidence 789999999998776663 334455789999764 7999999999999966544333333334569999999999998
Q ss_pred EEEEECCCCEEEEECCCC------------eEEEEee-----------cCCCcceeEEEEeCCCCEEEEEECCC------
Q 007855 441 FVTSSDDKSLRVWEFGIP------------VVIKYIS-----------EPHMHSMPSISLHPNTNWLAAQSLDN------ 491 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~------------~~~~~~~-----------~~~~~~i~~i~~sp~g~~l~~~s~dg------ 491 (587)
|+.++. |.-++|.+.-. +.+..+. .-..+.+.+++|.|.|.+|++....+
T Consensus 295 LLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~ 373 (445)
T KOG2139|consen 295 LLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLC 373 (445)
T ss_pred EEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhh
Confidence 766554 34445544210 0010010 01245688999999999999976543
Q ss_pred --eEEEEEcCCceeecccceecccccccceEEEEEcC---CCCEEEEEcCCCcEEEEeC
Q 007855 492 --QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 492 --~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~L~sgs~dG~I~vwd~ 545 (587)
.|.+||.+..-.+.. .+-+.....+..-++|+| +|.+|..+=+.|.|.-|++
T Consensus 374 k~~i~~fdtr~sp~vel--s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl 430 (445)
T KOG2139|consen 374 KLHISRFDTRKSPPVEL--SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPL 430 (445)
T ss_pred hhhhhhhcccccCceEE--EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeee
Confidence 366677654322211 111222222233366666 5677777777777777765
No 218
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.54 E-value=2.9e-14 Score=142.63 Aligned_cols=228 Identities=12% Similarity=0.187 Sum_probs=188.6
Q ss_pred eeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE
Q 007855 343 VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 422 (587)
Q Consensus 343 V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~ 422 (587)
-..+.++.+|++|+.|+.-|.|..+|+.++++...+.....+..+.|..+.. +++......++|||- .|..+..+
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq----~~AVAQK~y~yvYD~-~GtElHCl 206 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQ----FFAVAQKKYVYVYDN-NGTELHCL 206 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchH----HHHhhhhceEEEecC-CCcEEeeh
Confidence 4678899999999999999999999999999999999888888888876543 666667789999995 45556666
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 423 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 423 ~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
..| ..|..+.|.|..-+|++++..|.++.-|+.+++.+..+.. ..+.+..|+-+|-+..+-+|...|+|.+|+.....
T Consensus 207 k~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~ske 284 (545)
T KOG1272|consen 207 KRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-GAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKE 284 (545)
T ss_pred hhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-cCCccchhhcCCccceEEEcCCCceEEecCCCCcc
Confidence 544 6799999999999999999999999999999998877754 56678889999999999999999999999988776
Q ss_pred eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
++..+.. | .+.|.+|++.++|+|+++.+.|..|+|||++....+.++.. .-+...+++|. . -++++|....
T Consensus 285 PLvKiLc---H--~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sq-k--glLA~~~G~~ 355 (545)
T KOG1272|consen 285 PLVKILC---H--RGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQ-K--GLLALSYGDH 355 (545)
T ss_pred hHHHHHh---c--CCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccc-c--cceeeecCCe
Confidence 6644433 3 46678899999999999999999999999999887766654 34567788875 3 3566666668
Q ss_pred EEEc
Q 007855 583 IKYW 586 (587)
Q Consensus 583 I~iW 586 (587)
|.||
T Consensus 356 v~iw 359 (545)
T KOG1272|consen 356 VQIW 359 (545)
T ss_pred eeee
Confidence 8888
No 219
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=5.4e-12 Score=122.98 Aligned_cols=280 Identities=14% Similarity=0.173 Sum_probs=174.2
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-cCCceeeEEEecC-CCeEEEEeCCCeEEEEECCCC---
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-HSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG--- 372 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~--- 372 (587)
.+..++|++. -..++++..|-.|++|+-. . .+...++. ....|+|++|-|. +..|+.|+. +-|.||.....
T Consensus 100 dlr~~aWhqH-~~~fava~nddvVriy~ks-s-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 100 DLRGVAWHQH-IIAFAVATNDDVVRIYDKS-S-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred ceeeEeechh-hhhhhhhccCcEEEEeccC-C-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 4677889886 6678899999999999973 3 44444442 4567999999994 455666665 66999976532
Q ss_pred -c--------EEEEeec--CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 373 -Q--------VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 373 -~--------~i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
. ....+.. +..+..+.|.++ ...++-+.-.+..|.+||..++..+.......+.++-+.|+|++.+|
T Consensus 176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~d--gt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~l 253 (445)
T KOG2139|consen 176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNED--GTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVL 253 (445)
T ss_pred ccccccccccchhheeCCCCceeeEEEEcCC--CCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEE
Confidence 1 1122222 233345555554 33445555567899999999998776665667889999999999999
Q ss_pred EEEECCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc-------------
Q 007855 442 VTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK------------- 507 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~------------- 507 (587)
+.++-|+..++|..... ...+-+ . ..+.|...+|+|+|.+|+..+. +.-++|.+.-.......
T Consensus 254 faAt~davfrlw~e~q~wt~erw~-l-gsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~llia 330 (445)
T KOG2139|consen 254 FAATCDAVFRLWQENQSWTKERWI-L-GSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIA 330 (445)
T ss_pred EEecccceeeeehhcccceeccee-c-cCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeec
Confidence 99999999999965443 333333 2 3348999999999988766553 33344443211000000
Q ss_pred -----ceecc-cccccceEEEEEcCCCCEEEEEcCCC--------cEEEEeCCCCeeEEEEe-c--CCCCEEEEEEcCC-
Q 007855 508 -----KRFAG-HIVAGYACQVNFSPDGRFVMSGDGEG--------KCWFWDWKSCKVFRTLK-C--HEGVCIGCEWHPL- 569 (587)
Q Consensus 508 -----~~~~~-~~~~~~i~~l~~spdg~~L~sgs~dG--------~I~vwd~~t~~~~~~l~-~--h~~~V~~v~~sp~- 569 (587)
....+ ....+.+.+++|.|.|.||++.-..+ .|.+||.+..-.+.... + ......-+.|+|.
T Consensus 331 DL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~ 410 (445)
T KOG2139|consen 331 DLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLK 410 (445)
T ss_pred cchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecc
Confidence 00011 11245677899999999999875433 46778876544333221 1 0111233444442
Q ss_pred -CCCEEEEEECCCcEEEc
Q 007855 570 -EQSKVATCGWDGLIKYW 586 (587)
Q Consensus 570 -~~~~l~s~g~DG~I~iW 586 (587)
++.+|..|=..|.|.-|
T Consensus 411 n~g~lLsiaWsTGriq~y 428 (445)
T KOG2139|consen 411 NEGRLLSIAWSTGRIQRY 428 (445)
T ss_pred cCCcEEEEEeccCceEee
Confidence 34444444445666543
No 220
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.53 E-value=1.7e-11 Score=127.66 Aligned_cols=264 Identities=16% Similarity=0.200 Sum_probs=167.9
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe-CCCe
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 363 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~ 363 (587)
..+++.++......-..+.|+|+ ++++++++.||.|.++|+ .+.+.+.++.... ...++++++||+++++++ ..+.
T Consensus 25 t~~~~~~i~~~~~~h~~~~~s~D-gr~~yv~~rdg~vsviD~-~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~ 101 (369)
T PF02239_consen 25 TNKVVARIPTGGAPHAGLKFSPD-GRYLYVANRDGTVSVIDL-ATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGT 101 (369)
T ss_dssp T-SEEEEEE-STTEEEEEE-TT--SSEEEEEETTSEEEEEET-TSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTE
T ss_pred CCeEEEEEcCCCCceeEEEecCC-CCEEEEEcCCCeEEEEEC-CcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCc
Confidence 35677788765544455778999 889999999999999999 7888888886544 468899999999999776 5899
Q ss_pred EEEEECCCCcEEEEeecCCc------ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE-EEccCCCCeeEEEEec
Q 007855 364 IKYWDTETGQVIRTFSTGKI------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVD 436 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~------~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~-~~~~h~~~I~~i~~sp 436 (587)
+.|+|.++.+.++.+..... .....+.....+..++++--..+.|.+.|......+. .............|.|
T Consensus 102 v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp 181 (369)
T PF02239_consen 102 VSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP 181 (369)
T ss_dssp EEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred eeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc
Confidence 99999999999998875432 2223332222232345555556899999987654332 2223445677899999
Q ss_pred CCCEEEEE-ECCCCEEEEECCCCeEEEEeecC------------------------------------------------
Q 007855 437 NNRRFVTS-SDDKSLRVWEFGIPVVIKYISEP------------------------------------------------ 467 (587)
Q Consensus 437 ~~~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~------------------------------------------------ 467 (587)
++++|+++ ..+..|-++|..+......+...
T Consensus 182 dgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkv 261 (369)
T PF02239_consen 182 DGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKV 261 (369)
T ss_dssp TSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSE
T ss_pred ccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeE
Confidence 99988775 34557778887665544332100
Q ss_pred -----CCcceeEEEEeCCCCEEEEE----ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC--
Q 007855 468 -----HMHSMPSISLHPNTNWLAAQ----SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-- 536 (587)
Q Consensus 468 -----~~~~i~~i~~sp~g~~l~~~----s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-- 536 (587)
..+.-..+..||+++++++. ...+.|.++|..+......+....+ ..+..+.|+++|+++..+..
T Consensus 262 v~~I~~~G~glFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~----~~~~h~ef~~dG~~v~vS~~~~ 337 (369)
T PF02239_consen 262 VKTIPTQGGGLFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG----KRVVHMEFNPDGKEVWVSVWDG 337 (369)
T ss_dssp EEEEE-SSSS--EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT------EEEEEE-TTSSEEEEEEE--
T ss_pred EEEEECCCCcceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC----CcEeccEECCCCCEEEEEEecC
Confidence 01111345678999999998 3458999999988755443332222 23667999999998765543
Q ss_pred CCcEEEEeCCCCeeEEEEe
Q 007855 537 EGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 537 dG~I~vwd~~t~~~~~~l~ 555 (587)
+|.|.+||..+.+++..+.
T Consensus 338 ~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 338 NGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp TTEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEECCCcEEEEEEE
Confidence 4469999999999999887
No 221
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.7e-12 Score=120.25 Aligned_cols=231 Identities=11% Similarity=0.144 Sum_probs=163.9
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCC---------c-EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETG---------Q-VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~---------~-~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.|..-+|+|.+++|++|+.+|.|.+..+.+- + .+..+. +....+.+.|.. .+|++|+ ||.|+-
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d-----~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD-----DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh-----hheeecc-CceEEE
Confidence 4666789999999999999999999988532 1 222222 233445566652 2455554 599999
Q ss_pred EeCCCCcE------EEE--Ecc-----CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEE
Q 007855 411 WDMNTKEI------TQE--YDQ-----HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477 (587)
Q Consensus 411 wD~~t~~~------~~~--~~~-----h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~ 477 (587)
|..+.... +.+ ... .-..|+++...|..+.++.++.|+.++.||+.+++..+.+. +|...+.++..
T Consensus 86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~ 164 (325)
T KOG0649|consen 86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYR-GHTDYVHSVVG 164 (325)
T ss_pred eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEc-CCcceeeeeee
Confidence 98764321 000 111 22468999999988888888899999999999998877765 69999999998
Q ss_pred eCCCCEEEEEECCCeEEEEEcCCceeecccceecccc-----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 478 HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 478 sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
-.....+++|+.||++++||+++.+.+..+..++... ...+|.+++. +..+|++|+.- .+.+|.+++.++..
T Consensus 165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGgGp-~lslwhLrsse~t~ 241 (325)
T KOG0649|consen 165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGGP-KLSLWHLRSSESTC 241 (325)
T ss_pred cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecCCC-ceeEEeccCCCceE
Confidence 6666679999999999999999987766554443221 2445655655 45688888754 79999999988877
Q ss_pred EEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 553 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 553 ~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.|. -..+|..+.|.. ..++++|....|.-|
T Consensus 242 vfp-ipa~v~~v~F~~---d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 242 VFP-IPARVHLVDFVD---DCVLIGGEGNHVQSY 271 (325)
T ss_pred EEe-cccceeEeeeec---ceEEEeccccceeee
Confidence 775 344567788854 467777765555444
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=1.9e-13 Score=138.76 Aligned_cols=220 Identities=15% Similarity=0.277 Sum_probs=151.1
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEe--ecCCcceEEEEcc----CCCCCcEEEEEeCCCcEEEE
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF--STGKIPYVVKLNP----DDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~--~~~~~~~~~~~~~----~~~~~~~l~sg~~dg~I~iw 411 (587)
.|...|.|+.|+.....+.+++ |..+.+|..-+....... .....+..+-..+ .+.....|+.+++||.+.+.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il 90 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL 90 (737)
T ss_pred ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence 4666677899987766555555 555555543333222222 1112222222111 12234579999999999998
Q ss_pred eCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC
Q 007855 412 DMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 412 D~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg 491 (587)
+ +.++....+..|.++|.|-.|+|+|.-|++++.||.|++|.-. +.....+ .....+|.|++|.|+..-++.+. .+
T Consensus 91 ~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl-~Q~~~~v~c~~W~p~S~~vl~c~-g~ 166 (737)
T KOG1524|consen 91 N-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTV-VQNEESIRCARWAPNSNSIVFCQ-GG 166 (737)
T ss_pred c-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHH-hhcCceeEEEEECCCCCceEEec-CC
Confidence 6 3566667788999999999999999999999999999999843 3222222 23567899999999887665543 45
Q ss_pred eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 492 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
.+.|=.+..... ...++.| .+.|.++.|++...++++|+.|-+.+|||. .|..+..-..|..+|++++|.|
T Consensus 167 h~~IKpL~~n~k---~i~WkAH--DGiiL~~~W~~~s~lI~sgGED~kfKvWD~-~G~~Lf~S~~~ey~ITSva~np 237 (737)
T KOG1524|consen 167 HISIKPLAANSK---IIRWRAH--DGLVLSLSWSTQSNIIASGGEDFRFKIWDA-QGANLFTSAAEEYAITSVAFNP 237 (737)
T ss_pred eEEEeecccccc---eeEEecc--CcEEEEeecCccccceeecCCceeEEeecc-cCcccccCChhccceeeeeecc
Confidence 566655543322 2345566 788999999999999999999999999995 4555555666777777777777
No 223
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.51 E-value=2.6e-14 Score=151.48 Aligned_cols=260 Identities=18% Similarity=0.312 Sum_probs=184.4
Q ss_pred eCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEe
Q 007855 270 APPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFC 349 (587)
Q Consensus 270 ~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs 349 (587)
.+.+++..++.|..-...++.++.||.+.|+.++.+.. .-+++++|.|..|++|.+ ..+.++..+.+|+++|++|+|+
T Consensus 206 itgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIrvWrl-~~~~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 206 ITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIRVWRL-PDGAPVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred eecCccceeeeeeccchhhhccCCCCccccchhccchh-hhhhhhcccCceEEEEec-CCCchHHHHhccccceeeeccC
Confidence 33344444444444556778899999999999999988 789999999999999999 8999999999999999999999
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEE-----eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc
Q 007855 350 NDGTKFLTASYDKNIKYWDTETGQVIRT-----FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 424 (587)
Q Consensus 350 ~dg~~l~s~s~Dg~I~vWd~~t~~~i~~-----~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~ 424 (587)
|-. +.+.||++++||.+-.-.+.. +..+.....+.+... ..-+++|+.|+.-..|.+..-. .
T Consensus 284 P~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~---~~~f~Tgs~d~ea~n~e~~~l~------~ 350 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN---GDRFLTGSRDGEARNHEFEQLA------W 350 (1113)
T ss_pred ccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccc---ccccccccCCcccccchhhHhh------h
Confidence 953 778999999999882111111 111222222222222 2347888888877777654221 1
Q ss_pred CCCCeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCce
Q 007855 425 HLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 425 h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~ 502 (587)
+...+.-+.++.+ ..+.+++-.+-.+++|++.++.....+. .|...+..+.+||-. ....+++.||.+.|||+-.+.
T Consensus 351 ~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~ 429 (1113)
T KOG0644|consen 351 RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGI 429 (1113)
T ss_pred hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeecCCCcHhhhhccCCCceEeeecccCC
Confidence 1111211222211 2456666677789999999887766554 588899999999954 556678899999999998776
Q ss_pred eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
++.... .+| +.+....||++|..++....-|.++|.....++.
T Consensus 430 pik~y~--~gh---~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 430 PIKHYF--IGH---GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred cceeee--ccc---ceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 664433 333 4566689999999999999999999998655443
No 224
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.7e-12 Score=138.94 Aligned_cols=219 Identities=15% Similarity=0.165 Sum_probs=145.1
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCC---CeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEe-CCCe
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN 363 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~ 363 (587)
+.+..|...|.+++|+|+ |+.|+.++.+ ..|++||+ .++. .+..+.+| ...++|+|||++|+.++ .+|.
T Consensus 197 ~~lt~~~~~v~~p~wSPD-G~~la~~s~~~~~~~i~i~dl-~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~ 271 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPD-GSKLAYVSFENKKSQLVVHDL-RSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGV 271 (429)
T ss_pred eEeccCCCccccceEcCC-CCEEEEEEecCCCcEEEEEeC-CCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCc
Confidence 456788889999999999 7777776543 47999999 4553 33334443 44789999999888765 6776
Q ss_pred EEEE--ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCE
Q 007855 364 IKYW--DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 364 I~vW--d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
+.|| |+.++................|+|++. .+++++..++...+|++... .....+ .+.. .++.|+|+++.
T Consensus 272 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~--~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~--~~~~~SpDG~~ 346 (429)
T PRK01742 272 LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQ--SILFTSDRSGSPQVYRMSASGGGASLV-GGRG--YSAQISADGKT 346 (429)
T ss_pred EEEEEEECCCCCeEeeccCCCCcCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-cCCC--CCccCCCCCCE
Confidence 6555 666666544333333445677777643 45555556788888876432 222223 3433 46789999999
Q ss_pred EEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC--Cceeecccceecccccccc
Q 007855 441 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~ 518 (587)
|+.++.++ +.+||+.++...... .. .....+.|+|+|++|+.++.++.+.+|.+. ++... ..+..+ .+.
T Consensus 347 ia~~~~~~-i~~~Dl~~g~~~~lt-~~--~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~---~~l~~~--~g~ 417 (429)
T PRK01742 347 LVMINGDN-VVKQDLTSGSTEVLS-ST--FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFK---ARLPGS--DGQ 417 (429)
T ss_pred EEEEcCCC-EEEEECCCCCeEEec-CC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCce---EEccCC--CCC
Confidence 98888754 667999887654322 21 233567899999999999999988888753 23322 223333 344
Q ss_pred eEEEEEcCC
Q 007855 519 ACQVNFSPD 527 (587)
Q Consensus 519 i~~l~~spd 527 (587)
+..++|||-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 566888874
No 225
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.48 E-value=4.9e-12 Score=122.61 Aligned_cols=312 Identities=16% Similarity=0.222 Sum_probs=212.6
Q ss_pred ecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC---CCCeee
Q 007855 257 GKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF---NSGKCM 333 (587)
Q Consensus 257 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~---~~~~~~ 333 (587)
.+...|..+|.|+-..++..-+..+-+.|. +++++.+.+. ...|+.|-..|++.-+.+. +....+
T Consensus 40 ~~~s~drtvrv~lkrds~q~wpsI~~~mP~-----------~~~~~~y~~e-~~~L~vg~~ngtvtefs~sedfnkm~~~ 107 (404)
T KOG1409|consen 40 ISVSEDRTVRVWLKRDSGQYWPSIYHYMPS-----------PCSAMEYVSE-SRRLYVGQDNGTVTEFALSEDFNKMTFL 107 (404)
T ss_pred EEccccceeeeEEeccccccCchhhhhCCC-----------CceEeeeecc-ceEEEEEEecceEEEEEhhhhhhhcchh
Confidence 456778999999988776655555545544 4788888888 7888899999999988773 234566
Q ss_pred EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 007855 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 413 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~ 413 (587)
+.+..|...|..+-|+-...++++.+.|..+.-.-.+.+..+..+..........+.. .+...|...|.|....+
T Consensus 108 r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~-----~~~fvGd~~gqvt~lr~ 182 (404)
T KOG1409|consen 108 KDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDA-----LYAFVGDHSGQITMLKL 182 (404)
T ss_pred hhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceee-----EEEEecccccceEEEEE
Confidence 7788899999999999999999999999888777777776554443222211111111 14556666677666544
Q ss_pred --CCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC
Q 007855 414 --NTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 414 --~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg 491 (587)
..-.++..+.+|.+.+.+++|.+....|++|..|..|.+||+....-+......|...|..+...+--+.+++++.||
T Consensus 183 ~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg 262 (404)
T KOG1409|consen 183 EQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDG 262 (404)
T ss_pred eecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCC
Confidence 345678889999999999999999999999999999999999887777777678889999998888888999999999
Q ss_pred eEEEEEcCCceeecccc--------------------------eeccccc---ccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 492 QILIYSTRERFQLNKKK--------------------------RFAGHIV---AGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~--------------------------~~~~~~~---~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
.|.+|+++......+.- .+..|.. ...++..+-+....+...| ..-.+++
T Consensus 263 ~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg-~e~~vR~ 341 (404)
T KOG1409|consen 263 GIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMG-FEFSVRV 341 (404)
T ss_pred eEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCcccccccc-ceeEEEE
Confidence 99999986543221100 0011110 1112222222222222222 2223444
Q ss_pred EeCC-------CCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 543 WDWK-------SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 543 wd~~-------t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
-|-- +...+..+..-...|+.+.+-. .-.+|+|+|.|..|+|||
T Consensus 342 ~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd 392 (404)
T KOG1409|consen 342 CDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWD 392 (404)
T ss_pred ecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEe
Confidence 4321 1122333322223578887766 556899999999999998
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.48 E-value=2.9e-13 Score=130.10 Aligned_cols=222 Identities=19% Similarity=0.209 Sum_probs=157.0
Q ss_pred eEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc
Q 007855 345 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 424 (587)
Q Consensus 345 ~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~ 424 (587)
-.+|||+|+++++++.- .+.|-|.++-+..+.|..-..+.-+.|.. +...++.+...++.|.+|++...+-...++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~cldki~yieW~a--ds~~ilC~~yk~~~vqvwsl~Qpew~ckIde 89 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLCLDKIVYIEWKA--DSCHILCVAYKDPKVQVWSLVQPEWYCKIDE 89 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHHHHHhhheeeec--cceeeeeeeeccceEEEEEeecceeEEEecc
Confidence 46899999999999865 88889999888777666544444555554 3446788888999999999999999999999
Q ss_pred CCCCeeEEEEecCCCEEE-EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee
Q 007855 425 HLGAVNTITFVDNNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~ 503 (587)
....+.+++|+|+|+.++ ++.-+-.|.+|.+.+......- .....+..++|+|+|++.+.++.-...-.+.+.....
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~ 167 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA 167 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEec--ccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH
Confidence 999999999999997655 5556889999999887765433 2344568999999999998887543222222221111
Q ss_pred ecccceecccccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 504 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~--dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
....+.+.-. ....+.+.|+|||..|++=.. +-.|..|.. .-.+..++|+| .+++|+.|+.|+
T Consensus 168 W~ll~~f~~d--T~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v~wsP-~~qflavGsyD~ 232 (447)
T KOG4497|consen 168 WILLKEFKLD--TIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFVEWSP-CNQFLAVGSYDQ 232 (447)
T ss_pred HHHHHhcCCC--cccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEEEecc-ccceEEeeccch
Confidence 1112222222 223456899999998764332 112222211 13578899999 788999999999
Q ss_pred cEEEc
Q 007855 582 LIKYW 586 (587)
Q Consensus 582 ~I~iW 586 (587)
.+||-
T Consensus 233 ~lrvl 237 (447)
T KOG4497|consen 233 MLRVL 237 (447)
T ss_pred hhhhh
Confidence 99874
No 227
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.48 E-value=4.7e-13 Score=134.83 Aligned_cols=255 Identities=16% Similarity=0.245 Sum_probs=189.1
Q ss_pred eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcce--EEEEccCCCCCcEEEEEeCCCcEE
Q 007855 332 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 332 ~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~--~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
+...+..|.+.|..|.|+..|..|+++|.|..|.+||+..++....|..++... ...|.|.... ..+++++.||.|+
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d-~ti~~~s~dgqvr 212 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGD-RTIVTSSRDGQVR 212 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCC-cCceeccccCcee
Confidence 345677899999999999999999999999999999999999999998777654 3456666543 5688999999999
Q ss_pred EEeCCCC-cE--EEEEccCCCCeeEEEEecCCC-EEEEEECCCCEEEEECCCCeEEEEee--cCCCc---ceeEEEEeCC
Q 007855 410 QWDMNTK-EI--TQEYDQHLGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMH---SMPSISLHPN 480 (587)
Q Consensus 410 iwD~~t~-~~--~~~~~~h~~~I~~i~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~---~i~~i~~sp~ 480 (587)
+=.+... .+ ...+..|.++|.-++..|... .|.+++.|+.+.-+|++...+...+. ..+.. ....++.+|.
T Consensus 213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~ 292 (559)
T KOG1334|consen 213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR 292 (559)
T ss_pred eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence 8776433 22 345667999999999998765 49999999999999998765433332 12222 5678888886
Q ss_pred C-CEEEEEECCCeEEEEEcCCceee---cccceeccc----ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--C--
Q 007855 481 T-NWLAAQSLDNQILIYSTRERFQL---NKKKRFAGH----IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--C-- 548 (587)
Q Consensus 481 g-~~l~~~s~dg~I~iwd~~~~~~~---~~~~~~~~~----~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t--~-- 548 (587)
. ..+++++.|-.+++||.+.-..- ..+..+..+ .....|++++|+.++.-|++...|-.|++|.-.- |
T Consensus 293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~ 372 (559)
T KOG1334|consen 293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE 372 (559)
T ss_pred CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence 5 48999999999999997642211 001111111 2245689999998888777777888899995321 2
Q ss_pred --------eeEEE-EecCCC--CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 549 --------KVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 549 --------~~~~~-l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..+.. +++|.. .|.++-|.-....++++|+.-|.|.|||
T Consensus 373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWD 422 (559)
T ss_pred CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEe
Confidence 22333 778875 5777765533678999999999999997
No 228
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.46 E-value=8.9e-12 Score=120.74 Aligned_cols=273 Identities=20% Similarity=0.353 Sum_probs=179.1
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe----eeEEEcccC------------CceeeEEEecCC--CeEEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK----CMRTYMGHS------------KAVRDISFCNDG--TKFLT 357 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~----~~~~~~~h~------------~~V~~l~fs~dg--~~l~s 357 (587)
..-|.+|.|... |.+|++|..+|.|.++.-....+ ....++.|. ..|..+.|.+++ ..|+.
T Consensus 25 adiis~vef~~~-Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 25 ADIISAVEFDHY-GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hcceeeEEeecc-cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 456899999998 99999999999999997643333 344555554 358899999854 47788
Q ss_pred EeCCCeEEEEECCCCcEEE-EeecC--C---cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-ccCCCCee
Q 007855 358 ASYDKNIKYWDTETGQVIR-TFSTG--K---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAVN 430 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~-~~~~~--~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-~~h~~~I~ 430 (587)
.+.|.+|++|-+....... .+... . .+..+. +.+.+..+-.+. ..+.+.+ ..|...|+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr---------~p~~~~~~~~ve------a~prRv~aNaHtyhiN 168 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR---------LPVEGRHDLEVE------ASPRRVYANAHTYHIN 168 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceee---------ceeeccccceee------eeeeeeccccceeEee
Confidence 8899999999886433221 01000 0 000000 011111111110 0112222 46889999
Q ss_pred EEEEecCCCEEEEEECCCCEEEEECCCCeEEEE---eecC----CCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCce
Q 007855 431 TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKY---ISEP----HMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~---~~~~----~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
+|.++.+...++++. |-.|.+|.+........ +... .+.-|++..|||. .++|+..+..|.|++.|++...
T Consensus 169 SIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~a 247 (433)
T KOG1354|consen 169 SISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSA 247 (433)
T ss_pred eeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhh
Confidence 999999998888764 67899999875433222 2211 1234788899995 4678888899999999998432
Q ss_pred ee-cccceecccc----------cccceEEEEEcCCCCEEEEEcCCCcEEEEeC-CCCeeEEEEecCCC-----------
Q 007855 503 QL-NKKKRFAGHI----------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KSCKVFRTLKCHEG----------- 559 (587)
Q Consensus 503 ~~-~~~~~~~~~~----------~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~-~t~~~~~~l~~h~~----------- 559 (587)
.. ...+.+.... .-..|..+.|+++|+|+++-+.- +|.+||+ ...+++.+++.|..
T Consensus 248 LCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEn 326 (433)
T KOG1354|consen 248 LCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYEN 326 (433)
T ss_pred hhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHHHHHhhc
Confidence 11 1111111000 12347789999999999998765 7999999 55677888877742
Q ss_pred -C---EEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 560 -V---CIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 560 -~---V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
. -..|+|+. +...++||+....+++++
T Consensus 327 D~IfdKFec~~sg-~~~~v~TGsy~n~frvf~ 357 (433)
T KOG1354|consen 327 DAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN 357 (433)
T ss_pred cchhheeEEEEcC-CcceEecccccceEEEec
Confidence 1 24578887 677999999999999875
No 229
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.46 E-value=7.1e-12 Score=123.45 Aligned_cols=209 Identities=13% Similarity=0.130 Sum_probs=163.4
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC---CeeeEEEcccCCceeeEEEecCCC-eEEEEeCC--CeE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS---GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYD--KNI 364 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~D--g~I 364 (587)
+..+.+++|..++... ..|++|-.+|.+.+|..... ...+..+..+ ..+..|.-++... .+++|+.. ..+
T Consensus 100 ~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~l 175 (412)
T KOG3881|consen 100 TVSLGTKSIKGLKLAD---GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINEL 175 (412)
T ss_pred ccccccccccchhhcC---CEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccce
Confidence 4556677888887763 47888899999999998311 2233334333 4566777776444 55568888 789
Q ss_pred EEEECCCCcEEEEeecCC----------cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEE
Q 007855 365 KYWDTETGQVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTIT 433 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~----------~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~ 433 (587)
.|||++..+.+..-..-. -...+.|.+..+ ...|++++.-+.|++||++.+ +++..+.--..+|+++.
T Consensus 176 kiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~ 254 (412)
T KOG3881|consen 176 KIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTG 254 (412)
T ss_pred eeeecccceeeeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCcccCcceeEeccccCcceeee
Confidence 999999886665543221 112345555432 467999999999999999965 57888888889999999
Q ss_pred EecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
..|.++.+++|..-|.+..||++.++..........++|.++..+|++.+|++++.|..|+|+|+.+...+
T Consensus 255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99999999999999999999999999998877788999999999999999999999999999999885444
No 230
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.46 E-value=3.4e-12 Score=122.65 Aligned_cols=204 Identities=14% Similarity=0.223 Sum_probs=153.4
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~ 418 (587)
...+|+|.+|++|+..++.+.....|.||.....+. -+.
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-----------------------------------------w~~ 47 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-----------------------------------------WEP 47 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-----------------------------------------cee
Confidence 346788888888877777777766677666543221 134
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe---EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEE
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~i 495 (587)
..++..|...|++|+|.|..+.|++|+.|..-++|....+. +...+. .+....+++.|+|.++.|++|+....|.|
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSPKENKFAVGSGARLISV 126 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE-EeccceeeEeecCcCceEEeccCccEEEE
Confidence 55677899999999999999999999999999999984332 222222 36778999999999999999999999999
Q ss_pred EEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC------------------CCCeeEEEEecC
Q 007855 496 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW------------------KSCKVFRTLKCH 557 (587)
Q Consensus 496 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~------------------~t~~~~~~l~~h 557 (587)
|-.......-..+.+ .......|.+++|+|++-+|++|+.|+..+||.. .-|+++..+...
T Consensus 127 cy~E~ENdWWVsKhi-kkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 127 CYYEQENDWWVSKHI-KKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEecccceehhhhh-CCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 877654333222222 2223577899999999999999999999999974 113445555556
Q ss_pred CCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 558 EGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 558 ~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.+.|..+.|+| .+..|+-.+.|+.|.+=
T Consensus 206 ggwvh~v~fs~-sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 206 GGWVHGVLFSP-SGNRLAWVGHDSTVSFV 233 (361)
T ss_pred CCceeeeEeCC-CCCEeeEecCCCceEEe
Confidence 67899999999 77899999999988763
No 231
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.43 E-value=7.3e-11 Score=126.09 Aligned_cols=234 Identities=16% Similarity=0.189 Sum_probs=155.6
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 394 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~ 394 (587)
...|.++|. .+...+.+..+...+...+|+|+|++|+.++.. ..|.+||+.+++...............|++++.
T Consensus 169 ~~~l~~~d~--~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~ 246 (417)
T TIGR02800 169 RYELQVADY--DGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGS 246 (417)
T ss_pred cceEEEEcC--CCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCC
Confidence 345777776 344445566677789999999999999987754 479999999987655444444445677777543
Q ss_pred CCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC-C--CEEEEECCCCeEEEEeecCCC
Q 007855 395 KQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHM 469 (587)
Q Consensus 395 ~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~ 469 (587)
.++++.+.++ .|++||+.++.... +..+........|+|+++.|+.++.. + .|+++++......... .+.
T Consensus 247 --~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~--~~~ 321 (417)
T TIGR02800 247 --KLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLT--FRG 321 (417)
T ss_pred --EEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEee--cCC
Confidence 4555555544 58999998876443 34455556678999999988877653 3 5788888766543322 234
Q ss_pred cceeEEEEeCCCCEEEEEECCC---eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC---cEEEE
Q 007855 470 HSMPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFW 543 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG---~I~vw 543 (587)
..+..+.|+|++++|+.++.++ .|.+||+.++.... +... .......|+|+|++|+..+.++ .+++.
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~----l~~~---~~~~~p~~spdg~~l~~~~~~~~~~~l~~~ 394 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV----LTDT---GLDESPSFAPNGRMILYATTRGGRGVLGLV 394 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE----ccCC---CCCCCceECCCCCEEEEEEeCCCcEEEEEE
Confidence 4567889999999999988776 78899987643221 1111 1122368999999988776654 35555
Q ss_pred eCCCCeeEEEEecCCCCEEEEEE
Q 007855 544 DWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 544 d~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
+. ++.....+..+.+.+..+.|
T Consensus 395 ~~-~g~~~~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 395 ST-DGRFRARLPLGNGDVREPAW 416 (417)
T ss_pred EC-CCceeeECCCCCCCcCCCCC
Confidence 54 44555555545555555555
No 232
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.43 E-value=6.3e-11 Score=121.83 Aligned_cols=269 Identities=16% Similarity=0.264 Sum_probs=176.0
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-----eCC-----CeEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-----SYD-----KNIK 365 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-----s~D-----g~I~ 365 (587)
...++..+++++ |.+++.+. +..|+|++. .....+.+.... .+.++.|+|.|.+|.+= ..+ -.+.
T Consensus 34 ~~~~~v~~~S~~-G~lfA~~~-~~~v~i~~~-~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~ 108 (566)
T KOG2315|consen 34 SRPCNVFAYSNN-GRLFAYSD-NQVVKVFEI-ATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVL 108 (566)
T ss_pred CCcceeEEEcCC-CcEEEEEc-CCeEEEEEc-cCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCcee
Confidence 345677888888 87777655 678999998 444344333322 78999999999998752 222 3577
Q ss_pred EEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-E-EE
Q 007855 366 YWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-R-FV 442 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-~-l~ 442 (587)
+|+++++.....+..... .++..|+.+.. +++--..+.+.+|++...+.+.. .-|...|+.+.++|.+. . ++
T Consensus 109 v~~vet~~~~s~~q~k~Q~~W~~qfs~dEs----l~arlv~nev~f~~~~~f~~~~~-kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 109 VYNVETGVQRSQIQKKMQNGWVPQFSIDES----LAARLVSNEVQFYDLGSFKTIQH-KLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred eeeeccceehhheehhhhcCcccccccchh----hhhhhhcceEEEEecCCccceee-eeeccceeeEEecCCCCCceEE
Confidence 999999666655554332 26777777654 55555667888888876432221 12455566666665421 1 11
Q ss_pred E-----EECCCCEEEEEC---------------------------------------------------------CCCeE
Q 007855 443 T-----SSDDKSLRVWEF---------------------------------------------------------GIPVV 460 (587)
Q Consensus 443 s-----~s~Dg~I~iwd~---------------------------------------------------------~~~~~ 460 (587)
+ .+.-+.|+||.+ ....+
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 1 122223444433 21122
Q ss_pred EEEeecCCCcceeEEEEeCCCCEEEE--EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc---
Q 007855 461 IKYISEPHMHSMPSISLHPNTNWLAA--QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--- 535 (587)
Q Consensus 461 ~~~~~~~~~~~i~~i~~sp~g~~l~~--~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs--- 535 (587)
.. .....++|.+++|+|++.-|++ |-+-..+.|||++..-.. ... .+.-.++-|+|.|++|+.++
T Consensus 264 ~V--~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~---df~-----egpRN~~~fnp~g~ii~lAGFGN 333 (566)
T KOG2315|consen 264 SV--PLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF---DFP-----EGPRNTAFFNPHGNIILLAGFGN 333 (566)
T ss_pred EE--ecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeE---eCC-----CCCccceEECCCCCEEEEeecCC
Confidence 11 1235788999999999976655 456688999999764222 111 23334589999999987655
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC------CCcEEEcC
Q 007855 536 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 587 (587)
Q Consensus 536 ~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~------DG~I~iWD 587 (587)
..|.|-|||+.+.+++..+.+... +-+.|+| ++.+++|+.. |..|+||+
T Consensus 334 L~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~P-dGe~flTATTaPRlrvdNg~Kiwh 388 (566)
T KOG2315|consen 334 LPGDMEVWDVPNRKLIAKFKAANT--TVFEWSP-DGEYFLTATTAPRLRVDNGIKIWH 388 (566)
T ss_pred CCCceEEEeccchhhccccccCCc--eEEEEcC-CCcEEEEEeccccEEecCCeEEEE
Confidence 458899999999999999887654 5689999 7788888775 68889985
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=1.4e-09 Score=113.13 Aligned_cols=266 Identities=10% Similarity=0.225 Sum_probs=170.6
Q ss_pred CeEEEEecCCCCeeeEEE--cccCCceeeEEEecCCCeEEEEeC----CCeEEEEECCCC--c--EEEEee-cCCcceEE
Q 007855 319 TKVKIWDVFNSGKCMRTY--MGHSKAVRDISFCNDGTKFLTASY----DKNIKYWDTETG--Q--VIRTFS-TGKIPYVV 387 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fs~dg~~l~s~s~----Dg~I~vWd~~t~--~--~i~~~~-~~~~~~~~ 387 (587)
+.|.+|.+......+... .........|++++++++|+++.. .+.|..|.+... + .+.... .+..+..+
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i 92 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI 92 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence 688888873332222211 123455678999999999999877 478999988764 3 344444 45566667
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEE---Ec----------cCCCCeeEEEEecCCCEEEEEEC-CCCEEE
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE---YD----------QHLGAVNTITFVDNNRRFVTSSD-DKSLRV 452 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~---~~----------~h~~~I~~i~~sp~~~~l~s~s~-Dg~I~i 452 (587)
++.+++ ..++++...+|.|.++++.. +.+... +. .......++.++|+++++++... ...|.+
T Consensus 93 ~~~~~g--~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~ 170 (345)
T PF10282_consen 93 AVDPDG--RFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYV 170 (345)
T ss_dssp EECTTS--SEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEE
T ss_pred EEecCC--CEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEE
Confidence 776654 35566666799999999987 433322 21 12355789999999999888754 347999
Q ss_pred EECCCCe--E--EEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcC--Cce--eecccceecccc-cccceEEE
Q 007855 453 WEFGIPV--V--IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR--ERF--QLNKKKRFAGHI-VAGYACQV 522 (587)
Q Consensus 453 wd~~~~~--~--~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~--~~~--~~~~~~~~~~~~-~~~~i~~l 522 (587)
|++.... . ...+..+.......++|+|+++++++.. .++.|.+|++. .+. .+.....+.... .......|
T Consensus 171 ~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i 250 (345)
T PF10282_consen 171 YDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEI 250 (345)
T ss_dssp EEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEE
T ss_pred EEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeE
Confidence 9987654 2 2334446667789999999999886665 56889999887 321 111112221111 11256679
Q ss_pred EEcCCCCEEEEEc-CCCcEEEEeCC--CC--eeEEEEecCCCCEEEEEEcCCCCCEEEEEE-CCCcEEEcC
Q 007855 523 NFSPDGRFVMSGD-GEGKCWFWDWK--SC--KVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 587 (587)
Q Consensus 523 ~~spdg~~L~sgs-~dG~I~vwd~~--t~--~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 587 (587)
.++|||++|+++. ..+.|.+|++. ++ +.+..+.........++++| ++++|+.+. .++.|.+|+
T Consensus 251 ~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~ 320 (345)
T PF10282_consen 251 AISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFD 320 (345)
T ss_dssp EE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEE
Confidence 9999999988765 56789999993 23 34455555555679999999 566666555 667888763
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=3.5e-12 Score=129.95 Aligned_cols=194 Identities=19% Similarity=0.288 Sum_probs=130.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEc----ccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYM----GHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI 383 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~ 383 (587)
+.-|+.|-.-|.|.+.|.. ..+..+.+. -....|+|+.|-| +...|+.+-.+|.+.++|.+ +..+..
T Consensus 185 g~dllIGf~tGqvq~idp~-~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~-------~~~~~t 256 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPI-NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKE-------IVCGAT 256 (636)
T ss_pred CcceEEeeccCceEEecch-hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecc-------ccccCC
Confidence 5567777778889888872 222211111 1346899999999 45567777789999999872 111112
Q ss_pred ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEE
Q 007855 384 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKY 463 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 463 (587)
..+......++ .|......+ ..+..++..+.--.+.|+.++|+|||++|++.+.||.+||||+.+..++..
T Consensus 257 ~p~~~~~k~~~---~f~i~t~ks------k~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~ 327 (636)
T KOG2394|consen 257 APSYQALKDGD---QFAILTSKS------KKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGV 327 (636)
T ss_pred CCcccccCCCC---eeEEeeeec------cccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHH
Confidence 22222222221 122221111 112234444444556899999999999999999999999999988776544
Q ss_pred eecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 464 ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 464 ~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
.. ..-+...|++|+|||+||++|+.|..|.||.+..+..+ ..-.+| ..+|..++|.
T Consensus 328 mk-SYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV---ARGqGH--kSWVs~VaFD 383 (636)
T KOG2394|consen 328 MK-SYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV---ARGQGH--KSWVSVVAFD 383 (636)
T ss_pred HH-hhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE---Eecccc--ccceeeEeec
Confidence 43 35567899999999999999999999999999876544 223344 6888888887
No 235
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=1.9e-10 Score=123.34 Aligned_cols=234 Identities=12% Similarity=0.124 Sum_probs=155.3
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCC
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 396 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 396 (587)
.|.++|. .+...+.+..+...+....|+|||+.|+..+.+ ..|.+|++.+++...............|+|++.
T Consensus 180 ~l~~~d~--~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~-- 255 (430)
T PRK00178 180 TLQRSDY--DGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGS-- 255 (430)
T ss_pred EEEEECC--CCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCC--
Confidence 4667776 344445566677889999999999999877654 369999999887655433333334567777553
Q ss_pred cEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CC--CEEEEECCCCeEEEEeecCCCcc
Q 007855 397 NILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 471 (587)
Q Consensus 397 ~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~ 471 (587)
.++++...+| .|++||+.++.... +..+........|+|+++.|+..+. ++ .|+++++..+........ ...
T Consensus 256 ~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~--~~~ 332 (430)
T PRK00178 256 KLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFV--GNY 332 (430)
T ss_pred EEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC--CCC
Confidence 4555555555 68888999886543 4455566777899999998877664 33 577788877664333221 223
Q ss_pred eeEEEEeCCCCEEEEEECCC---eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC---CcEEEEeC
Q 007855 472 MPSISLHPNTNWLAAQSLDN---QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDW 545 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d---G~I~vwd~ 545 (587)
.....|+|+|++|+..+..+ .|.+||+.++.... +.. .. ......|+|+|++|+..+.+ ..|+++++
T Consensus 333 ~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~-lt~--~~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~ 405 (430)
T PRK00178 333 NARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRI-LTD--TS----LDESPSVAPNGTMLIYATRQQGRGVLMLVSI 405 (430)
T ss_pred ccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEE-ccC--CC----CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 34578999999998877543 58888987654321 111 11 11236899999998766543 35777787
Q ss_pred CCCeeEEEEecCCCCEEEEEEcC
Q 007855 546 KSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 546 ~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
. +.....+..+.+.+...+|+|
T Consensus 406 ~-g~~~~~l~~~~g~~~~p~ws~ 427 (430)
T PRK00178 406 N-GRVRLPLPTAQGEVREPSWSP 427 (430)
T ss_pred C-CCceEECcCCCCCcCCCccCC
Confidence 4 444455655666777888887
No 236
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.40 E-value=2.2e-10 Score=123.07 Aligned_cols=234 Identities=15% Similarity=0.148 Sum_probs=153.4
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCC
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ 396 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~ 396 (587)
.|.++|. .+...+.+..+...+.+..|+|||+.|+..+.+ ..|.+||+.+++...............|+|++.
T Consensus 199 ~l~i~d~--dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~-- 274 (448)
T PRK04792 199 QLMIADY--DGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGK-- 274 (448)
T ss_pred EEEEEeC--CCCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCC--
Confidence 5666776 333334556677889999999999999877653 268899999887644333333334567777653
Q ss_pred cEEEEEeCCCc--EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CC--CEEEEECCCCeEEEEeecCCCcc
Q 007855 397 NILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DK--SLRVWEFGIPVVIKYISEPHMHS 471 (587)
Q Consensus 397 ~~l~sg~~dg~--I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~ 471 (587)
.++++...++. |+++|+.+++... +..+........|+|+++.|+..+. ++ .|.++|+.++....... ....
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~--~g~~ 351 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTF--EGEQ 351 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEec--CCCC
Confidence 56666666775 8888998876543 4445566778999999998877664 33 46667777665443321 2222
Q ss_pred eeEEEEeCCCCEEEEEECC-C--eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC-CC--cEEEEeC
Q 007855 472 MPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWFWDW 545 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~s~d-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-dG--~I~vwd~ 545 (587)
....+|+|+|++|+..+.+ + .|.++|+.++.... + ... .......|+|+|++|+..+. +| .|++++.
T Consensus 352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-l---t~~---~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-L---TST---RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-c---cCC---CCCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 3457899999998887653 3 45667776653221 1 111 01113579999998876554 33 3777886
Q ss_pred CCCeeEEEEecCCCCEEEEEEcC
Q 007855 546 KSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 546 ~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
++.....+..+.+.+...+|+|
T Consensus 425 -~G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 425 -DGRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -CCCceEECcCCCCCcCCCccCC
Confidence 5666677776777788889987
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=1e-10 Score=125.52 Aligned_cols=203 Identities=15% Similarity=0.129 Sum_probs=135.6
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeC---CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCC--e
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDK--N 363 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg--~ 363 (587)
+.+..|...|.+.+|+|+ ++.|+.++. ...|.+|++ ..++.. .+..+.....++.|+|+|+.|+ +.+.+| .
T Consensus 197 ~~lt~~~~~v~~p~wSpD-g~~la~~s~~~~~~~l~~~dl-~~g~~~-~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~ 273 (433)
T PRK04922 197 QTILRSAEPILSPAWSPD-GKKLAYVSFERGRSAIYVQDL-ATGQRE-LVASFRGINGAPSFSPDGRRLALTLSRDGNPE 273 (433)
T ss_pred eEeecCCCccccccCCCC-CCEEEEEecCCCCcEEEEEEC-CCCCEE-EeccCCCCccCceECCCCCEEEEEEeCCCCce
Confidence 345667788999999999 777777653 347999999 555443 3334445566889999999776 445555 5
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc--EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
|.+||+.+++...............|++++. .++++...+|. |+++|+.+++.... ..+......+.|+|+|+.|
T Consensus 274 Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~~l-t~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 274 IYVMDLGSRQLTRLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAERL-TFQGNYNARASVSPDGKKI 350 (433)
T ss_pred EEEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeEEe-ecCCCCccCEEECCCCCEE
Confidence 9999999887654333333334567777543 34444434444 77778877764332 2233445578999999999
Q ss_pred EEEECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCCc
Q 007855 442 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRER 501 (587)
Q Consensus 442 ~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~ 501 (587)
+..+.++ .|.+||+.++... .+.. ........|+|+|++|+..+.+ +.|.++++...
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt~--~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLTP--GSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECCC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8876543 5999999877654 3322 2234567999999988877653 45777777543
No 238
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=7.1e-11 Score=120.89 Aligned_cols=268 Identities=19% Similarity=0.302 Sum_probs=169.5
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC-----------CCeEEEE
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----------DKNIKYW 367 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-----------Dg~I~vW 367 (587)
=+-+.|||. |.||+|-..-| |.+|-- .+-..++.| .|. .|.-+.|||..+||+|-+. ...|+||
T Consensus 213 etyv~wSP~-GTYL~t~Hk~G-I~lWGG-~~f~r~~RF-~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW 287 (698)
T KOG2314|consen 213 ETYVRWSPK-GTYLVTFHKQG-IALWGG-ESFDRIQRF-YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW 287 (698)
T ss_pred eeeEEecCC-ceEEEEEeccc-eeeecC-ccHHHHHhc-cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence 567899999 99999988766 789975 333444444 254 4899999999999998764 1579999
Q ss_pred ECCCCcEEEEeecCCcc----eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEE
Q 007855 368 DTETGQVIRTFSTGKIP----YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~----~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s 443 (587)
|+.+|...+.|...... ....|+.++. +++...-..|.||+..+..++..-.-.-..|....|+|.++.|+-
T Consensus 288 DI~tG~lkrsF~~~~~~~~~WP~frWS~DdK----y~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 288 DIATGLLKRSFPVIKSPYLKWPIFRWSHDDK----YFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EccccchhcceeccCCCccccceEEeccCCc----eeEEeccceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 99999999988873322 2566776553 555555578888887664333222223344555555555444432
Q ss_pred EECC---------------------------------------------------------CCEEEEECCCCeEEEEeec
Q 007855 444 SSDD---------------------------------------------------------KSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 444 ~s~D---------------------------------------------------------g~I~iwd~~~~~~~~~~~~ 466 (587)
-+.. ..+-|+.++........ .
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~-v 442 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV-V 442 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee-e
Confidence 2110 01222222211110000 1
Q ss_pred CCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCC-ceeecccceecccccccceEEEEEcCCCCEEEEE---cCCCc
Q 007855 467 PHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG---DGEGK 539 (587)
Q Consensus 467 ~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg---s~dG~ 539 (587)
.....|..++|-|.|+.+++-+.. .++.+|.+.+ .......+.+. ....+.+.|+|.|++++.+ +..|.
T Consensus 443 elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d----k~~~N~vfwsPkG~fvvva~l~s~~g~ 518 (698)
T KOG2314|consen 443 ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD----KKFANTVFWSPKGRFVVVAALVSRRGD 518 (698)
T ss_pred ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhc----ccccceEEEcCCCcEEEEEEecccccc
Confidence 234568889999999988776643 6788888763 33332233332 2345569999999998865 45788
Q ss_pred EEEEeCCCCeeEEEEe-cCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 540 CWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 540 I~vwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
+.++|.....+...-. .|. ..+.+.|.| .+++++|++.-+.
T Consensus 519 l~F~D~~~a~~k~~~~~eh~-~at~veWDP-tGRYvvT~ss~wr 560 (698)
T KOG2314|consen 519 LEFYDTDYADLKDTASPEHF-AATEVEWDP-TGRYVVTSSSSWR 560 (698)
T ss_pred eEEEecchhhhhhccCcccc-ccccceECC-CCCEEEEeeehhh
Confidence 9999987432222211 233 357899999 8899999987544
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.37 E-value=3.3e-11 Score=114.16 Aligned_cols=147 Identities=19% Similarity=0.369 Sum_probs=104.4
Q ss_pred eEEEEecCCCEEEEEEC----------CCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEE--CCCeEEEE
Q 007855 430 NTITFVDNNRRFVTSSD----------DKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIY 496 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s~----------Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s--~dg~I~iw 496 (587)
..+.|+++|.+|++-.. -+...||.++.. .....+......+|.+++|+|+|+.|++.. .++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778888887665443 123555555332 334444334455799999999999876653 56799999
Q ss_pred EcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC---CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCE
Q 007855 497 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG---EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 573 (587)
Q Consensus 497 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~---dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 573 (587)
|++. ..+ ..+. ...+..+.|||+|++|++++. .|.|.|||+++.+.+..+. |. .++.++|+| ++++
T Consensus 89 d~~~-~~i---~~~~----~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~WsP-dGr~ 157 (194)
T PF08662_consen 89 DVKG-KKI---FSFG----TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEWSP-DGRY 157 (194)
T ss_pred cCcc-cEe---Eeec----CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEEcC-CCCE
Confidence 9962 222 2222 234567999999999998763 4779999999998887775 33 478999999 7788
Q ss_pred EEEEEC------CCcEEEcC
Q 007855 574 VATCGW------DGLIKYWD 587 (587)
Q Consensus 574 l~s~g~------DG~I~iWD 587 (587)
|+++.. |..++||+
T Consensus 158 ~~ta~t~~r~~~dng~~Iw~ 177 (194)
T PF08662_consen 158 LATATTSPRLRVDNGFKIWS 177 (194)
T ss_pred EEEEEeccceeccccEEEEE
Confidence 888875 78888885
No 240
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.36 E-value=4.9e-09 Score=108.92 Aligned_cols=265 Identities=14% Similarity=0.233 Sum_probs=169.0
Q ss_pred CCeEEEEEccCCCcEEEEEeC----CCeEEEEecCCC-Ce--eeEEEcccCCceeeEEEecCCCeEEEEeC-CCeEEEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGM----DTKVKIWDVFNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWD 368 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~----Dg~I~iWd~~~~-~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-Dg~I~vWd 368 (587)
.....|+++|+ +++|+++.. ++.|..|.+... +. .+............+++++++++|+++.+ +|.|.+++
T Consensus 37 ~~Ps~l~~~~~-~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~ 115 (345)
T PF10282_consen 37 ENPSWLAVSPD-GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP 115 (345)
T ss_dssp SSECCEEE-TT-SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEeC-CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence 44667889998 788877765 579999998544 33 33333334455678999999999999886 89999999
Q ss_pred CCC-CcEEEE---ee-----------cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc--EE--EEEc-cCCCC
Q 007855 369 TET-GQVIRT---FS-----------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--IT--QEYD-QHLGA 428 (587)
Q Consensus 369 ~~t-~~~i~~---~~-----------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~--~~--~~~~-~h~~~ 428 (587)
+.. |.+... +. ....+.++.+.|++ ..++++......|.+|++.... +. ..+. .....
T Consensus 116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg--~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~G 193 (345)
T PF10282_consen 116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG--RFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSG 193 (345)
T ss_dssp ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS--SEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred ccCCcccceeeeecccCCCCCcccccccccceeEEECCCC--CEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCC
Confidence 987 433322 21 12344567777754 3556656666789999997654 32 2222 34466
Q ss_pred eeEEEEecCCCEEEEEE-CCCCEEEEECC--CCe--EEEEeecC---C--CcceeEEEEeCCCCEEEEEE-CCCeEEEEE
Q 007855 429 VNTITFVDNNRRFVTSS-DDKSLRVWEFG--IPV--VIKYISEP---H--MHSMPSISLHPNTNWLAAQS-LDNQILIYS 497 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~--~~~--~~~~~~~~---~--~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd 497 (587)
.+.+.|+|+++++++.. .++.|.++++. .+. .+..+... . ......|.++|+|++|+++. ..+.|.+|+
T Consensus 194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~ 273 (345)
T PF10282_consen 194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD 273 (345)
T ss_dssp EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence 88999999999876665 46779999987 332 22222211 1 12567899999999988876 467899999
Q ss_pred cCC-ceeecccceecccccccceEEEEEcCCCCEEEEEc-CCCcEEEEeC--CCCeeEEEEe-cCCCCEEEEEE
Q 007855 498 TRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDW--KSCKVFRTLK-CHEGVCIGCEW 566 (587)
Q Consensus 498 ~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~--~t~~~~~~l~-~h~~~V~~v~~ 566 (587)
+.. ...+.....+... ......++++|+|++|+++. .++.|.+|++ .+|.+...-. ..-....||.|
T Consensus 274 ~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 274 LDPATGTLTLVQTVPTG--GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp ECTTTTTEEEEEEEEES--SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred EecCCCceEEEEEEeCC--CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 842 1223222222211 23366799999999998776 5668999876 5776654432 22334566665
No 241
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.1e-10 Score=121.40 Aligned_cols=221 Identities=15% Similarity=0.158 Sum_probs=143.0
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEe---CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-eCCC--eE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAG---MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDK--NI 364 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs---~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg--~I 364 (587)
.+..+...+.+.+|+|+ |+.|+..+ .+..|.+|++ ..++.. .+......+..+.|+|||+.|+.. +.+| .|
T Consensus 193 ~lt~~~~~~~~p~wSPD-G~~la~~s~~~g~~~i~i~dl-~~G~~~-~l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I 269 (429)
T PRK03629 193 VVHRSPQPLMSPAWSPD-GSKLAYVTFESGRSALVIQTL-ANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL 269 (429)
T ss_pred EeecCCCceeeeEEcCC-CCEEEEEEecCCCcEEEEEEC-CCCCeE-EccCCCCCcCCeEECCCCCEEEEEEcCCCCcEE
Confidence 34456778999999999 77776543 3457999998 555432 222333445678999999988865 3344 58
Q ss_pred EEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
.+||+.+++...............|+|++. .++++...++ .|+++|+.++... .+..+.....+..|+|+|++|+
T Consensus 270 ~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 270 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred EEEECCCCCEEEccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEE
Confidence 899999887765554444455677777653 3444443344 4555577776543 3333445567889999999988
Q ss_pred EEECC---CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCe---EEEEEcCCceeecccceecccccc
Q 007855 443 TSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ---ILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 443 s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~---I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
..+.+ ..|.+||+.++... .+... .......|+|+|++|+.++.++. +.++++..... ..+.++ .
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~~-~Lt~~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~----~~l~~~--~ 417 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGVQ-VLTDT--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK----ARLPAT--D 417 (429)
T ss_pred EEEccCCCceEEEEECCCCCeE-EeCCC--CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe----EECccC--C
Confidence 87654 35888999877643 33222 22346789999999999988764 66677644322 122222 2
Q ss_pred cceEEEEEcC
Q 007855 517 GYACQVNFSP 526 (587)
Q Consensus 517 ~~i~~l~~sp 526 (587)
+.+...+|+|
T Consensus 418 ~~~~~p~Wsp 427 (429)
T PRK03629 418 GQVKFPAWSP 427 (429)
T ss_pred CCcCCcccCC
Confidence 3455577876
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=9.7e-11 Score=111.00 Aligned_cols=118 Identities=15% Similarity=0.347 Sum_probs=89.9
Q ss_pred CCCCeeEEEEecCCCEEEEE--ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcC
Q 007855 425 HLGAVNTITFVDNNRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 499 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~ 499 (587)
..++|.+++|+|+++.|++. ..++.|.+||++ ...+..+ ....+..+.|+|+|++|++++.+ |.|.+||++
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~---~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~ 133 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSF---GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVR 133 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEee---cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECC
Confidence 44679999999999997665 356799999997 4444444 34577889999999999998754 679999998
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeeEEEE
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~------dG~I~vwd~~t~~~~~~l 554 (587)
+...+.... ...++.++|||+|++|+++.. |..++||++ +|+++...
T Consensus 134 ~~~~i~~~~-------~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~-~G~~l~~~ 186 (194)
T PF08662_consen 134 KKKKISTFE-------HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSF-QGRLLYKK 186 (194)
T ss_pred CCEEeeccc-------cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEe-cCeEeEec
Confidence 765553322 133577999999999998874 677899998 46665543
No 243
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=2.9e-10 Score=122.08 Aligned_cols=204 Identities=15% Similarity=0.131 Sum_probs=139.3
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeC---CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCe-
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKN- 363 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~- 363 (587)
.+.+..|...|.+.+|+|+ |+.|+..+. +..|.+||+ .++.. ..+..+.+.+...+|+|||+.|+ +.+.++.
T Consensus 194 ~~~lt~~~~~v~~p~wSpD-G~~lay~s~~~g~~~i~~~dl-~~g~~-~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~ 270 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPN-RQEITYMSYANGRPRVYLLDL-ETGQR-ELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNT 270 (435)
T ss_pred cEEEecCCCCeEeeEECCC-CCEEEEEEecCCCCEEEEEEC-CCCcE-EEeecCCCcccCcEECCCCCEEEEEEecCCCc
Confidence 3456678889999999999 777776553 468999999 55544 34555667788999999999876 4555554
Q ss_pred -EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 364 -IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 364 -I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
|.+||+.++................|+|++. .++++...+| .|+++|+.++.... +..+.+.+....|+|+|+.
T Consensus 271 ~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~--~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ 347 (435)
T PRK05137 271 DIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGS--QIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDL 347 (435)
T ss_pred eEEEEECCCCceEEccCCCCccCceeEcCCCC--EEEEEECCCCCCeEEEEECCCCCeEE-eecCCCcccCeEECCCCCE
Confidence 7777998887654433333344567777543 3444433333 68888987765543 3334556777899999999
Q ss_pred EEEEECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC------CeEEEEEcCCc
Q 007855 441 FVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD------NQILIYSTRER 501 (587)
Q Consensus 441 l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d------g~I~iwd~~~~ 501 (587)
|+..+.++ .|.+||+..... ..+.. ...+..+.|+|+|++|+..+.+ ..|.++++..+
T Consensus 348 ia~~~~~~~~~~i~~~d~~~~~~-~~lt~--~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 348 IAFTKQGGGQFSIGVMKPDGSGE-RILTS--GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred EEEEEcCCCceEEEEEECCCCce-EeccC--CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 98876543 588888765443 33322 2346788999999998876543 25778887654
No 244
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.35 E-value=3.6e-09 Score=108.04 Aligned_cols=259 Identities=16% Similarity=0.114 Sum_probs=161.3
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC----------CCeEEEEECCCCcEEEEeecCCcce---
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 385 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~----------Dg~I~vWd~~t~~~i~~~~~~~~~~--- 385 (587)
++|.+.|. .+.+.+.++..-..+- .+ ++|||+.|+++.. +..|.+||+.+.+.+..+..+..+.
T Consensus 27 ~~v~ViD~-~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~ 103 (352)
T TIGR02658 27 TQVYTIDG-EAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLV 103 (352)
T ss_pred ceEEEEEC-CCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhc
Confidence 89999999 7788888776443332 34 9999998887765 7899999999999999998755433
Q ss_pred -----EEEEccCCCCCcEEEEEeC-CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC-
Q 007855 386 -----VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP- 458 (587)
Q Consensus 386 -----~~~~~~~~~~~~~l~sg~~-dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~- 458 (587)
.+.+++++. .++++--. +..|.++|+.+++.+.++.-.. ...-... .+...+ +-+.||......+...
T Consensus 104 ~~~~~~~~ls~dgk--~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t-~e~~~~-~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 104 GTYPWMTSLTPDNK--TLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT-ANDTFF-MHCRDGSLAKVGYGTKG 178 (352)
T ss_pred cCccceEEECCCCC--EEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe-cCCccE-EEeecCceEEEEecCCC
Confidence 777887653 34444435 7999999999999998876422 1111111 122222 2234454444333221
Q ss_pred eE-EEEee--cCCCcce-eEEEEeC-CCCEEEEEECCCeEEEEEcCCceeec--ccceecc-----cccccceEEEEEcC
Q 007855 459 VV-IKYIS--EPHMHSM-PSISLHP-NTNWLAAQSLDNQILIYSTRERFQLN--KKKRFAG-----HIVAGYACQVNFSP 526 (587)
Q Consensus 459 ~~-~~~~~--~~~~~~i-~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~-----~~~~~~i~~l~~sp 526 (587)
+. ..... .....++ ..-.+.+ +|+++++... |.|.+.|+....... ....+.. ....+...-+++++
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~ 257 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHR 257 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcC
Confidence 11 11100 0000000 0003455 7888777766 999999964432111 1111110 11123333499999
Q ss_pred CCCEEEEEc----------CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEE-EECCCcEEEcC
Q 007855 527 DGRFVMSGD----------GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT-CGWDGLIKYWD 587 (587)
Q Consensus 527 dg~~L~sgs----------~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s-~g~DG~I~iWD 587 (587)
+++.|++.. ..+.|.++|..+++.+..+.. ...+..++++|++..+|++ ...++.|.+.|
T Consensus 258 dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD 328 (352)
T TIGR02658 258 ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFD 328 (352)
T ss_pred CCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence 999988742 224799999999999999885 4468999999954425554 44688888876
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=6.3e-11 Score=121.75 Aligned_cols=243 Identities=16% Similarity=0.207 Sum_probs=163.5
Q ss_pred ccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 338 GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
.|....+.|..+|||+|++ +|.+--.|++||+..-.+. |..+-..-++.|.+..+.-.-++.-..|..|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 5778889999999999875 5667889999999765443 333333333444443333233444455555544322111
Q ss_pred cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEE
Q 007855 417 EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 496 (587)
Q Consensus 417 ~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iw 496 (587)
..... -...-..++++.-..-|++++....|+-+++..+.-+..+.. ....+.++.+++...+|++|+.+|.|.+|
T Consensus 127 hy~~R---IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~~~~lN~v~in~~hgLla~Gt~~g~VEfw 202 (703)
T KOG2321|consen 127 HYRTR---IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-DSGELNVVSINEEHGLLACGTEDGVVEFW 202 (703)
T ss_pred eeeee---cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-ccccceeeeecCccceEEecccCceEEEe
Confidence 11111 122334566664333455555566789999998887776643 45789999999999999999999999999
Q ss_pred EcCCceeecccce------ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCCEEEEEEcCC
Q 007855 497 STRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPL 569 (587)
Q Consensus 497 d~~~~~~~~~~~~------~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~-~h~~~V~~v~~sp~ 569 (587)
|.++...+..+.. ..+......|+++.|+.+|-.+++|+.+|.|.|||+++.+++..-. +..-+|..+.|.+.
T Consensus 203 DpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~ 282 (703)
T KOG2321|consen 203 DPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDT 282 (703)
T ss_pred cchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeeccccc
Confidence 9987655433322 1222223458899999999999999999999999999988765443 23348999999874
Q ss_pred C-CCEEEEEECCCcEEEcC
Q 007855 570 E-QSKVATCGWDGLIKYWD 587 (587)
Q Consensus 570 ~-~~~l~s~g~DG~I~iWD 587 (587)
+ +..|+|+. ...++|||
T Consensus 283 ~~q~~v~S~D-k~~~kiWd 300 (703)
T KOG2321|consen 283 DQQNKVVSMD-KRILKIWD 300 (703)
T ss_pred CCCceEEecc-hHHhhhcc
Confidence 3 34566554 55789997
No 246
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.33 E-value=5.8e-12 Score=128.28 Aligned_cols=282 Identities=18% Similarity=0.288 Sum_probs=194.1
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC------eeeEEEcccCCceeeEEEecCCCeEEEEeCC
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 361 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D 361 (587)
.+..|.||...|..|+-..+ .+-+++++.|.+|++|.+...+ .|..++..|..+|.++.|..+-++++++ |
T Consensus 727 rL~nf~GH~~~iRai~AidN-ENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D 803 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDN-ENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D 803 (1034)
T ss_pred eeecccCcHHHhHHHHhccc-ccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence 35688999999999987776 7889999999999999985433 4778899999999999999998888765 7
Q ss_pred CeEEEEECCCCcEEEEee---cCCcceEEEEccCCCCCcEEEEE-eCCCcEEEEeCCCCcEEEEEcc-----CCCCeeEE
Q 007855 362 KNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ-----HLGAVNTI 432 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg-~~dg~I~iwD~~t~~~~~~~~~-----h~~~I~~i 432 (587)
|.|.+||.--+.++.... .......+...++-+. +++++| +...+|+++|.+..+.+.+++. ....+.++
T Consensus 804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~-~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR-HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred CcceeecccccchhHhhhcCcccCCCceeEecccCcc-hheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 899999998887765432 2233344555554333 455555 6788999999999987777643 44668999
Q ss_pred EEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEE-EEcCCceeeccccee-
Q 007855 433 TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI-YSTRERFQLNKKKRF- 510 (587)
Q Consensus 433 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~i-wd~~~~~~~~~~~~~- 510 (587)
+..+.|++++.+-..|.|.+.|.+++..+..... .......++ .|..+.|+....|..+.+ |-..++......+..
T Consensus 883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp-mecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp 960 (1034)
T KOG4190|consen 883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRP-MECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP 960 (1034)
T ss_pred EeccCcchhhHHhcCCcEEEEecCCCceeccCCc-ccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC
Confidence 9999999999999999999999999998876642 222222222 356667777778888888 865554322211111
Q ss_pred -cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----CeeEEEEe--cCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 511 -AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----CKVFRTLK--CHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 511 -~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t----~~~~~~l~--~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
..|... .-|.-|++......+.+|--.. ...+.+++ ...+..++++-.|.+ .-++.|...|.|
T Consensus 961 epahflq---------svgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~I 1030 (1034)
T KOG4190|consen 961 EPAHFLQ---------SVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAI 1030 (1034)
T ss_pred cchhhhh---------ccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecccc-chhhccCCCCce
Confidence 111111 1244556655555666664211 11122232 234677888888844 456677888888
Q ss_pred EE
Q 007855 584 KY 585 (587)
Q Consensus 584 ~i 585 (587)
.+
T Consensus 1031 aL 1032 (1034)
T KOG4190|consen 1031 AL 1032 (1034)
T ss_pred ee
Confidence 75
No 247
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.32 E-value=1.5e-11 Score=139.94 Aligned_cols=252 Identities=15% Similarity=0.273 Sum_probs=185.7
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
++.+.....++...-|.....+. .+..+-..|.++.=+|...+.++|+.||.|++|....++.+..+.......+.+
T Consensus 2180 s~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr 2256 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTR 2256 (2439)
T ss_pred cccCCcccCCccccceeccccee---EeecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhh
Confidence 44555556666666676522222 233456778999999988999999999999999999999999888766644433
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE---ECCCCEEEEECCCCeEEEEee
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS---SDDKSLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~---s~Dg~I~iwd~~~~~~~~~~~ 465 (587)
.... ..++-+.++..||.|.+|.+. .++....+.|....+.+.|.. ..++++ ++++.+.+||...+.....+.
T Consensus 2257 ~~f~-~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2257 SRFN-HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred hhhc-ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence 3332 345679999999999999987 666777888999999999985 556665 357899999986655444555
Q ss_pred cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 466 EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
..|.+.++++++.|..+.|++|+.+|.|++||++..+.....+. +. ...++++|+..|.|+||++
T Consensus 2333 ~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~--------------~~-~~~~f~~~ss~g~ikIw~~ 2397 (2439)
T KOG1064|consen 2333 TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA--------------LD-TREYFVTGSSEGNIKIWRL 2397 (2439)
T ss_pred eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh--------------hh-hhheeeccCcccceEEEEc
Confidence 67999999999999999999999999999999987654433222 22 4568999999999999999
Q ss_pred CCCeeEEEEec---CCC--CEEEEEEcCCCCCEEEEEECCCc
Q 007855 546 KSCKVFRTLKC---HEG--VCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 546 ~t~~~~~~l~~---h~~--~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
....++..+.. |.+ .+++....-.-...|++||.||+
T Consensus 2398 s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2398 SEFGLLHTFPSEHAKQGFFRNIGMQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred cccchhhcCchhhcccchhhhcCceeeeccCceEEEecCCCC
Confidence 88877777653 222 11112221113457999999985
No 248
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.30 E-value=2.7e-09 Score=112.51 Aligned_cols=259 Identities=16% Similarity=0.143 Sum_probs=169.9
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
+..++.++.+|.|..+|. .+++.+....... .+.+.-.. .+..++.++.++.|..||..+|+.+..+..........
T Consensus 105 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~-~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~ 181 (377)
T TIGR03300 105 GGLVFVGTEKGEVIALDA-EDGKELWRAKLSS-EVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLR 181 (377)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCcEeeeeccCc-eeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeec
Confidence 567778888999999998 6788777654322 22211111 34567778889999999999999988876543321111
Q ss_pred --EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC----C------e-eEEEEecCCCEEEEEECCCCEEEEEC
Q 007855 389 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG----A------V-NTITFVDNNRRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 389 --~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~----~------I-~~i~~sp~~~~l~s~s~Dg~I~iwd~ 455 (587)
..|.-. +..++++..++.+..+|+.+++.+........ . + .+..+ .+..+++++.+|.++.||.
T Consensus 182 ~~~sp~~~-~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~ 258 (377)
T TIGR03300 182 GSASPVIA-DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDL 258 (377)
T ss_pred CCCCCEEE-CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEEC
Confidence 001001 13578888899999999999987655431100 0 1 11112 2457888888999999999
Q ss_pred CCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 456 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
.+++.+...... ...... ..+..+++++.+|.|..+|..++..+-....+.+..... ... .+..|++++
T Consensus 259 ~tG~~~W~~~~~---~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ss----p~i--~g~~l~~~~ 327 (377)
T TIGR03300 259 RSGRVLWKRDAS---SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTA----PAV--VGGYLVVGD 327 (377)
T ss_pred CCCcEEEeeccC---CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCcccc----CEE--ECCEEEEEe
Confidence 988776554321 111222 246678888899999999998876553332222221111 111 367899999
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 536 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 536 ~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.+|.|+++|..+++.+.+++.+...+...-... + ..|+.++.||.|..|
T Consensus 328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 999999999999999999987775443332222 3 358899999998765
No 249
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=6.2e-10 Score=119.08 Aligned_cols=200 Identities=12% Similarity=0.129 Sum_probs=128.3
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeC---CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCeEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIK 365 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~ 365 (587)
+.+..+...+.+.+|+|+ |+.|+..+. ...|.+||+ .+++... +......+.+.+|+|||+.|+ +.+.++...
T Consensus 189 ~~l~~~~~~v~~p~wSPD-G~~la~~s~~~~~~~I~~~dl-~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~ 265 (427)
T PRK02889 189 QSALSSPEPIISPAWSPD-GTKLAYVSFESKKPVVYVHDL-ATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQ 265 (427)
T ss_pred eEeccCCCCcccceEcCC-CCEEEEEEccCCCcEEEEEEC-CCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCce
Confidence 345577888999999999 777776653 246999999 5555433 333445667899999999887 466777766
Q ss_pred EEE--CCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEE--eCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 366 YWD--TETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQW--DMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 366 vWd--~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw--D~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
||. +.++. +..+..+ .......|++++. .+++++..+|...+| ++.++...... .+........|+|+|++
T Consensus 266 Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~--~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~~~~~SpDG~~ 341 (427)
T PRK02889 266 IYTVNADGSG-LRRLTQSSGIDTEPFFSPDGR--SIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNTSPRISPDGKL 341 (427)
T ss_pred EEEEECCCCC-cEECCCCCCCCcCeEEcCCCC--EEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcCceEECCCCCE
Confidence 664 55554 3334322 2233456777543 444454445555555 44555433222 22334456889999999
Q ss_pred EEEEECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC---eEEEEEcC
Q 007855 441 FVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 499 (587)
Q Consensus 441 l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg---~I~iwd~~ 499 (587)
|+.++.++ .|.+||+.++.... +.. ........|+|+|++|+..+.++ .+.+.++.
T Consensus 342 Ia~~s~~~g~~~I~v~d~~~g~~~~-lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~ 403 (427)
T PRK02889 342 LAYISRVGGAFKLYVQDLATGQVTA-LTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD 403 (427)
T ss_pred EEEEEccCCcEEEEEEECCCCCeEE-ccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC
Confidence 98877665 59999998776543 322 22346789999999988887554 34555553
No 250
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=2.2e-08 Score=102.31 Aligned_cols=252 Identities=10% Similarity=0.103 Sum_probs=162.9
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEE-e---------CCCeEEEEecCCCCeeeEEEccc-------CCceeeEEEe
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSA-G---------MDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDISFC 349 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sg-s---------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fs 349 (587)
+++.++..-..+-. + ++|+ ++.|+.+ + .+..|.+||+ .+.+.+..+.-- ...-..++++
T Consensus 38 ~v~g~i~~G~~P~~-~-~spD-g~~lyva~~~~~R~~~G~~~d~V~v~D~-~t~~~~~~i~~p~~p~~~~~~~~~~~~ls 113 (352)
T TIGR02658 38 RVLGMTDGGFLPNP-V-VASD-GSFFAHASTVYSRIARGKRTDYVEVIDP-QTHLPIADIELPEGPRFLVGTYPWMTSLT 113 (352)
T ss_pred EEEEEEEccCCCce-e-ECCC-CCEEEEEeccccccccCCCCCEEEEEEC-ccCcEEeEEccCCCchhhccCccceEEEC
Confidence 44555543222222 4 8999 5555554 5 5899999999 788888777632 2233478999
Q ss_pred cCCCeEEEEeC--CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcE-EEE---E
Q 007855 350 NDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEI-TQE---Y 422 (587)
Q Consensus 350 ~dg~~l~s~s~--Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~-~~~---~ 422 (587)
|||++|++... +..|.+.|+.+++.+..+..+.......... .. +.+-+.||......+.+ ++. ... +
T Consensus 114 ~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e---~~--~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf 188 (352)
T TIGR02658 114 PDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTAN---DT--FFMHCRDGSLAKVGYGTKGNPKIKPTEVF 188 (352)
T ss_pred CCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecC---Cc--cEEEeecCceEEEEecCCCceEEeeeeee
Confidence 99999998763 6899999999999999998866444444322 21 33445566665544432 221 111 1
Q ss_pred ccCCCCee-EEEEec-CCCEEEEEECCCCEEEEECCCC-----eEEEEeecC------CCcceeEEEEeCCCCEEEEEEC
Q 007855 423 DQHLGAVN-TITFVD-NNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEP------HMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 423 ~~h~~~I~-~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~------~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
.....++. .-.|.+ ++++++++.. |+|.+.|+... ..+..+... ....+.-++++++++.+++...
T Consensus 189 ~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~ 267 (352)
T TIGR02658 189 HPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLAD 267 (352)
T ss_pred cCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEec
Confidence 11000000 003455 7877777776 99999996442 222222111 2223445999999998888532
Q ss_pred ----------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007855 490 ----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 490 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sgs-~dG~I~vwd~~t~~~~~~l 554 (587)
.+.|.++|..+...+..+.. ...+..++++|||+ +|++.. .++.|.++|..+++.+.++
T Consensus 268 ~~~~~thk~~~~~V~ViD~~t~kvi~~i~v------G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 268 QRAKWTHKTASRFLFVVDAKTGKRLRKIEL------GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCccccccCCCCEEEEEECCCCeEEEEEeC------CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 25799999988876654432 23566799999999 777666 5788999999999999988
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.26 E-value=2.2e-10 Score=125.49 Aligned_cols=200 Identities=15% Similarity=0.237 Sum_probs=161.6
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc--eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~ 418 (587)
..|....+..+...++.++.+..+.+||...+.....+...... +++...-+....-++++|+.-+.|.+|+......
T Consensus 88 ~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 88 DWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred ccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCC
Confidence 44445556667788899999999999999988887777665443 2344444445557899999999999999984443
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
-..+.+|.+.|..+.++.+|+++++.|+|.++++|++.+..........|...+..++++|+ .+++++.|-+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 33688999999999999999999999999999999999988776555579999999999999 9999999999999976
Q ss_pred CCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 499 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
... .+ ..+.+|. ...+..++..++...+++++.||.+++|++..
T Consensus 246 ~~~-~l---~~y~~h~-g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 246 NGT-QL---EVYDEHS-GKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ccc-ee---hhhhhhh-hcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence 543 22 2566664 35677899999999999999999999999743
No 252
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.26 E-value=4.4e-09 Score=107.24 Aligned_cols=275 Identities=16% Similarity=0.229 Sum_probs=175.4
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC------------
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK------------ 362 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg------------ 362 (587)
-.-++..++|||. |.+|++....| |.+|.-....++++.. | ..|..+.|+|.+++|.+=+..+
T Consensus 31 ~~~p~~~~~~SP~-G~~l~~~~~~~-V~~~~g~~~~~l~~~~--~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~ 105 (561)
T COG5354 31 ENWPVAYVSESPL-GTYLFSEHAAG-VECWGGPSKAKLVRFR--H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFT 105 (561)
T ss_pred cCcchhheeecCc-chheehhhccc-eEEccccchhheeeee--c-CCceecccCcccceeeeeccCCccChhhccCCcc
Confidence 5568999999999 99999887654 8999874334333332 3 4599999999999999876543
Q ss_pred ---eEEEEECCCCcEEEEeecCCcc---e-EEEEccCCCCC-------------------------------cEEEE---
Q 007855 363 ---NIKYWDTETGQVIRTFSTGKIP---Y-VVKLNPDDDKQ-------------------------------NILLA--- 401 (587)
Q Consensus 363 ---~I~vWd~~t~~~i~~~~~~~~~---~-~~~~~~~~~~~-------------------------------~~l~s--- 401 (587)
.+.+||+.+|..+..+.....+ + .+.|+.++.-. .+.++
T Consensus 106 ~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~ 185 (561)
T COG5354 106 SKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEG 185 (561)
T ss_pred ccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEecCCccccCchhhccccceeeEEecCCC
Confidence 4999999999888777543332 1 33333322100 01111
Q ss_pred ------------EeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE-----------CCCCEEEEECCCC
Q 007855 402 ------------GMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-----------DDKSLRVWEFGIP 458 (587)
Q Consensus 402 ------------g~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-----------~Dg~I~iwd~~~~ 458 (587)
+...+.+++|.+..+..+....-..-.-..+.|.+.|++|++-- ....++|+++...
T Consensus 186 n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~ 265 (561)
T COG5354 186 NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER 265 (561)
T ss_pred CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc
Confidence 12234455555544433333222222334577888887765421 1245788888744
Q ss_pred eEEEEeecCCCcceeEEEEeCCCCEEEEEE--CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC
Q 007855 459 VVIKYISEPHMHSMPSISLHPNTNWLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
.+.... ...++|..++|.|.++.|++.+ +.-.+.++|++...... ...+. =..+.|||.++|++.++-
T Consensus 266 ~i~V~~--~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~---~Pe~~-----rNT~~fsp~~r~il~agF 335 (561)
T COG5354 266 SIPVEK--DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFY---FPEQK-----RNTIFFSPHERYILFAGF 335 (561)
T ss_pred ccceec--cccccceeeeecccCCceeEEecccccceeecccccceEEe---cCCcc-----cccccccCcccEEEEecC
Confidence 333222 4578999999999888776655 77889999998763221 11111 123789999999887654
Q ss_pred ---CCcEEEEeCCCCeeEE-EEecCCCCEEEEEEcCCCCCEEEEEEC------CCcEEEcC
Q 007855 537 ---EGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSKVATCGW------DGLIKYWD 587 (587)
Q Consensus 537 ---dG~I~vwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~l~s~g~------DG~I~iWD 587 (587)
.|.|.+||......+. .+.+.. ..-|.|+| ++.++.+.-. |..|+|||
T Consensus 336 ~nl~gni~i~~~~~rf~~~~~~~~~n--~s~~~wsp-d~qF~~~~~ts~k~~~Dn~i~l~~ 393 (561)
T COG5354 336 DNLQGNIEIFDPAGRFKVAGAFNGLN--TSYCDWSP-DGQFYDTDTTSEKLRVDNSIKLWD 393 (561)
T ss_pred CccccceEEeccCCceEEEEEeecCC--ceEeeccC-CceEEEecCCCcccccCcceEEEE
Confidence 5789999987654443 666544 45688999 6667666533 77899996
No 253
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.25 E-value=1.8e-09 Score=114.63 Aligned_cols=212 Identities=14% Similarity=0.204 Sum_probs=154.0
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCC-----------CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec--
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKY-----------GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-- 350 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~-----------g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-- 350 (587)
...+.+.++.-|...|+.++|.|-. .-+||++...|.|.|||. ..+..+..+..|.++|.+++|-+
T Consensus 43 ~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~-~~~s~~~~l~~~~~~~qdl~W~~~r 121 (1062)
T KOG1912|consen 43 RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDF-VLASVINWLSHSNDSVQDLCWVPAR 121 (1062)
T ss_pred hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEe-hhhhhhhhhcCCCcchhheeeeecc
Confidence 3456788899999999999998741 236788888999999999 77778888889999999999987
Q ss_pred -CC-CeEEEEeCCCeEEEEECCCCcEEEEeecCCcce-EEEEccCCCCCcEEEEEeCCCcEEEEeCCC-------CcEEE
Q 007855 351 -DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQ 420 (587)
Q Consensus 351 -dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-------~~~~~ 420 (587)
+. ..|+.-....+|.+|++.+|+........+.+. |+.+.|.+. ..++.-+..|.|.+.+.-. ++..+
T Consensus 122 d~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~--rh~~~l~s~g~vl~~~~l~~sep~~pgk~~q 199 (1062)
T KOG1912|consen 122 DDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS--RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQ 199 (1062)
T ss_pred CcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc--ceEEEEccCceEEEEeccCCCCCCCCceeEE
Confidence 33 466666777899999999999999887766554 577777765 4456666667777665421 23333
Q ss_pred EEccCCC------------C-------------eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEE
Q 007855 421 EYDQHLG------------A-------------VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI 475 (587)
Q Consensus 421 ~~~~h~~------------~-------------I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i 475 (587)
.-..|.. . ...++|+|.-+.++.......+.|+|+.-..++..+.. ..+.+.-+
T Consensus 200 I~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv 278 (1062)
T KOG1912|consen 200 ITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFV 278 (1062)
T ss_pred EecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEe-ccCCccee
Confidence 3222222 0 11245677766666666778899999998888777654 44455666
Q ss_pred EEeCCC--CEEEEEECCCeEEEEEcC
Q 007855 476 SLHPNT--NWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 476 ~~sp~g--~~l~~~s~dg~I~iwd~~ 499 (587)
.+-|++ ..|++...||.+.+|-.+
T Consensus 279 ~vlP~~~rd~LfclH~nG~ltirvrk 304 (1062)
T KOG1912|consen 279 DVLPDPRRDALFCLHSNGRLTIRVRK 304 (1062)
T ss_pred EeccCCCcceEEEEecCCeEEEEEee
Confidence 676654 578999999999998654
No 254
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=3.7e-10 Score=123.67 Aligned_cols=182 Identities=16% Similarity=0.141 Sum_probs=144.3
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC----eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcce
Q 007855 397 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGA----VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 397 ~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~----I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
..++.++.+..+.+||...+.....+...... ..-+-++++.-++++|+.-+.|.+|+........ ...+|.+.|
T Consensus 100 k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~-~l~GHeG~i 178 (967)
T KOG0974|consen 100 KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPI-RLKGHEGSI 178 (967)
T ss_pred ceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcc-eecccCCce
Confidence 46888889999999999988777666433221 1223344566789999999999999987333222 234799999
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
.++.++-+|.++++.|.|..+++|++.+..... ...-+| ...+..++|.|+ ++++++.|.+.++|+.. ++.+.
T Consensus 179 F~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgH--saRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~ 251 (967)
T KOG0974|consen 179 FSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGH--SARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLE 251 (967)
T ss_pred EEEEEccCCcEEEEEecCcceeeeecccccccC--cccccc--cceeEEEEeccc--eeEEeccceEEEEEecc-cceeh
Confidence 999999999999999999999999998876553 233445 677888999998 99999999999999764 45556
Q ss_pred EEecCCC-CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 553 TLKCHEG-VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 553 ~l~~h~~-~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+..|.+ .+..++..+ +...++|++.||.|++||
T Consensus 252 ~y~~h~g~~iw~~~~~~-~~~~~vT~g~Ds~lk~~~ 286 (967)
T KOG0974|consen 252 VYDEHSGKGIWKIAVPI-GVIIKVTGGNDSTLKLWD 286 (967)
T ss_pred hhhhhhhcceeEEEEcC-CceEEEeeccCcchhhhh
Confidence 8888875 789999988 788999999999999996
No 255
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.22 E-value=3.5e-09 Score=109.97 Aligned_cols=227 Identities=17% Similarity=0.211 Sum_probs=164.8
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEeecC----CcceEEEEccC-----------------CCCCcEEEEEeCCCcE
Q 007855 350 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTG----KIPYVVKLNPD-----------------DDKQNILLAGMSDKKI 408 (587)
Q Consensus 350 ~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~----~~~~~~~~~~~-----------------~~~~~~l~sg~~dg~I 408 (587)
|...+|+....||.++||++..++....|... ....+..|.-. ..+..+++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999999888777532 22223333211 1123578889999999
Q ss_pred EEEeCCCCcEEEEEc--cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEE
Q 007855 409 VQWDMNTKEITQEYD--QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 486 (587)
Q Consensus 409 ~iwD~~t~~~~~~~~--~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~ 486 (587)
.+|++..+++...+. .|.+.|+++.++.+-..|.+++.|+.+..|+....+.+.... .....+.+++++|++..+++
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~-~~~~~~~sl~is~D~~~l~~ 161 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWK-EQKPLVSSLCISPDGKILLT 161 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeec-cCCCccceEEEcCCCCEEEe
Confidence 999999999888775 699999999999999999999999999999999888777664 36677899999999999998
Q ss_pred EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCC-----CCEEEEEc-CCCcEEEEeCCC----CeeEEEEec
Q 007855 487 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD-----GRFVMSGD-GEGKCWFWDWKS----CKVFRTLKC 556 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~~L~sgs-~dG~I~vwd~~t----~~~~~~l~~ 556 (587)
++ ++|.+|++.++..+ ..|.|| .+.+.++.|.-+ |.|++++. .+..|.+|-+.. ......+..
T Consensus 162 as--~~ik~~~~~~kevv---~~ftgh--~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~ 234 (541)
T KOG4547|consen 162 AS--RQIKVLDIETKEVV---ITFTGH--GSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTV 234 (541)
T ss_pred cc--ceEEEEEccCceEE---EEecCC--CcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeecc
Confidence 86 78999999987655 667888 677888888776 77776554 455577776543 233444544
Q ss_pred CCCCEEEEEEcCCCCC---EEEEEECCCcEE
Q 007855 557 HEGVCIGCEWHPLEQS---KVATCGWDGLIK 584 (587)
Q Consensus 557 h~~~V~~v~~sp~~~~---~l~s~g~DG~I~ 584 (587)
..-+|+.=.+...+.. .|++.-.+|.|.
T Consensus 235 ~dipv~~ds~~~ed~~~~l~lAst~~~g~v~ 265 (541)
T KOG4547|consen 235 PDIPVTSDSGLLEDGTIPLVLASTLIPGIVH 265 (541)
T ss_pred CCCCeEeccccccccccceEEeeeccCceee
Confidence 4444443333332222 344444455444
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=1.3e-08 Score=108.56 Aligned_cols=238 Identities=12% Similarity=0.123 Sum_probs=146.6
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE---EEeCC--CeEEEEECCCCcEEEEeecCCcceEEEEccCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL---TASYD--KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~---s~s~D--g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~ 393 (587)
..|.+.|. .+...+.+......+.+-.|+|||+.++ +...+ ..|.+.++.+++...............|+|++
T Consensus 165 ~~l~~~d~--dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG 242 (428)
T PRK01029 165 GELWSVDY--DGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK 242 (428)
T ss_pred ceEEEEcC--CCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence 35666665 3444444555566677889999997532 33333 35778899888765544444444556788865
Q ss_pred CCCcEEEEEeCCC----cEEEEeCCCC---cEEEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEE--ECCC-CeEEE
Q 007855 394 DKQNILLAGMSDK----KIVQWDMNTK---EITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVW--EFGI-PVVIK 462 (587)
Q Consensus 394 ~~~~~l~sg~~dg----~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iw--d~~~-~~~~~ 462 (587)
. .++++...+| .+.+|++..+ ...+....+.......+|+|+|+.|+..+ .+|...|| ++.. +....
T Consensus 243 ~--~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~ 320 (428)
T PRK01029 243 K--LLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR 320 (428)
T ss_pred C--EEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceE
Confidence 4 4555443333 3444777653 33333333334456789999999888766 45655555 4432 22233
Q ss_pred EeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC---
Q 007855 463 YISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--- 536 (587)
Q Consensus 463 ~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~--- 536 (587)
.+.. ....+....|+|+|++|+..+.+ ..|.+||+.++..... ... ...+....|+|||++|+....
T Consensus 321 ~lt~-~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L----t~~--~~~~~~p~wSpDG~~L~f~~~~~g 393 (428)
T PRK01029 321 LLTK-KYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL----TTS--PENKESPSWAIDSLHLVYSAGNSN 393 (428)
T ss_pred Eecc-CCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc----cCC--CCCccceEECCCCCEEEEEECCCC
Confidence 3322 33456788999999999877654 4699999987644321 111 123445899999998875432
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 537 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 537 dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
...|++||+.+++..... ...+.+...+|+|
T Consensus 394 ~~~L~~vdl~~g~~~~Lt-~~~g~~~~p~Ws~ 424 (428)
T PRK01029 394 ESELYLISLITKKTRKIV-IGSGEKRFPSWGA 424 (428)
T ss_pred CceEEEEECCCCCEEEee-cCCCcccCceecC
Confidence 356899999887654433 3455567788987
No 257
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.21 E-value=9.9e-09 Score=108.16 Aligned_cols=258 Identities=13% Similarity=0.111 Sum_probs=168.1
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
+..+++++.+|.|..+|. .+++.+..+............ ++..++.++.++.|..+|..+|+.+.............
T Consensus 65 ~~~v~v~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p 141 (377)
T TIGR03300 65 GGKVYAADADGTVVALDA-ETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP 141 (377)
T ss_pred CCEEEEECCCCeEEEEEc-cCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence 567888888999999998 688888776544332222322 56788888999999999999999998876654332111
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe-----eEEEEecCCCEEEEEECCCCEEEEECCCCeEEEE
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKY 463 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I-----~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~ 463 (587)
... ...+++++.++.|..||..+++.+..+......+ .+..+. +..++.++.++.|..+|..++..+..
T Consensus 142 ~v~----~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~ 215 (377)
T TIGR03300 142 LVA----NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWE 215 (377)
T ss_pred EEE----CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeee
Confidence 111 2357778889999999999999887765433221 111222 24677888889999999988876544
Q ss_pred eecCCCc---c---eeEEEEeC--CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 464 ISEPHMH---S---MPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 464 ~~~~~~~---~---i~~i~~sp--~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
....... . +..+.-+| .+..+++++.+|.+..||..++..+-... .. .. ......+..|++++
T Consensus 216 ~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~-~~-----~~---~~p~~~~~~vyv~~ 286 (377)
T TIGR03300 216 QRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD-AS-----SY---QGPAVDDNRLYVTD 286 (377)
T ss_pred eccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec-cC-----Cc---cCceEeCCEEEEEC
Confidence 3211110 0 00011111 35678888899999999998876543222 11 11 11122467888889
Q ss_pred CCCcEEEEeCCCCeeEEEEecCC-CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 536 GEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 536 ~dG~I~vwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+|.|+.+|..+++.+....... ....+... .+..|++++.+|.|.+||
T Consensus 287 ~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i---~g~~l~~~~~~G~l~~~d 336 (377)
T TIGR03300 287 ADGVVVALDRRSGSELWKNDELKYRQLTAPAV---VGGYLVVGDFEGYLHWLS 336 (377)
T ss_pred CCCeEEEEECCCCcEEEccccccCCccccCEE---ECCEEEEEeCCCEEEEEE
Confidence 99999999999998876653222 22222222 234788899999998875
No 258
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.19 E-value=3.9e-09 Score=100.81 Aligned_cols=258 Identities=22% Similarity=0.323 Sum_probs=172.0
Q ss_pred CCeEEEEecCCCCeeeE--EE-cccCCceeeEEEec---CCC-eEEEEeCCCeEEEEECCCCcEEEEeec---CC----c
Q 007855 318 DTKVKIWDVFNSGKCMR--TY-MGHSKAVRDISFCN---DGT-KFLTASYDKNIKYWDTETGQVIRTFST---GK----I 383 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~--~~-~~h~~~V~~l~fs~---dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~---~~----~ 383 (587)
.|.+.++++ ...+.+. ++ ..-...+..|.|.. +|. .|+-+-.+|.|.++..........+.. .. .
T Consensus 45 ~Gkl~Lys~-~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~ 123 (339)
T KOG0280|consen 45 SGKLHLYSL-EDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVE 123 (339)
T ss_pred ccceEEEee-cccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhhee
Confidence 467888887 3333222 11 12345677788864 455 556677789999997764443333321 11 1
Q ss_pred ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE--EEEEccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCe-
Q 007855 384 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPV- 459 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~--~~~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~- 459 (587)
..++.|.+.+. -++++..+|.+.+-+.....+ ++.++.|.-++....|+. +.+.+.+|++|+.+..||++.+.
T Consensus 124 ~lslD~~~~~~---~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGT---KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCc---eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 23445555443 489999999999766655543 458899999999999985 34688999999999999999554
Q ss_pred EEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC--CEEEEEcC
Q 007855 460 VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG--RFVMSGDG 536 (587)
Q Consensus 460 ~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg--~~L~sgs~ 536 (587)
.+..-...|...|.+|.-+| .+.+|++|+-|-.|++||.++..+. .+. ....+.|..+.++|.- ++|+++-.
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP----l~~-~~v~GGVWRi~~~p~~~~~lL~~CMh 275 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP----LFK-AKVGGGVWRIKHHPEIFHRLLAACMH 275 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc----ccc-CccccceEEEEecchhhhHHHHHHHh
Confidence 33332345778888888876 5789999999999999999854322 122 2235788999999953 34444444
Q ss_pred CCcEEEEeCCCC--e---eEEEEecCCCCEEEEEEcCCCCCEEEEEE-CCCcEE-Ec
Q 007855 537 EGKCWFWDWKSC--K---VFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIK-YW 586 (587)
Q Consensus 537 dG~I~vwd~~t~--~---~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~-iW 586 (587)
+| .+|-+.... + .+...+.|.+-+..-.|.. ...+|+||+ .|..|+ +|
T Consensus 276 ~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~-~~~~lATCsFYDk~~~~~W 330 (339)
T KOG0280|consen 276 NG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDS-KDSFLATCSFYDKKIRQLW 330 (339)
T ss_pred cC-ceEEEecccccchheeeeccccccceeecccccc-ccceeeeeeccccceeeee
Confidence 44 455555443 3 3445567888888889966 456899987 477755 66
No 259
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=6.9e-10 Score=107.92 Aligned_cols=246 Identities=15% Similarity=0.265 Sum_probs=177.7
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE-CCCCcEEEEeec--CCcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD-TETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd-~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
.+++.+.||.+.|++...-|-..-+++.+.|.+++||- .+.++.-..+.. +....++..... ...|++|-.+|.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e---~~~L~vg~~ngt 91 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSE---SRRLYVGQDNGT 91 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeecc---ceEEEEEEecce
Confidence 45667889999999999999888899999999999994 445555444433 334444444443 367999999999
Q ss_pred EEEEeCC----CCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCE
Q 007855 408 IVQWDMN----TKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 483 (587)
Q Consensus 408 I~iwD~~----t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 483 (587)
+.-+.+. .....+.+..|...|..+.|+-...++++++.|..+.---.+.+..+........ -+++.+.-. +
T Consensus 92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~--~t~~~~d~~--~ 167 (404)
T KOG1409|consen 92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP--ASALQFDAL--Y 167 (404)
T ss_pred EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc--CCCCceeeE--E
Confidence 9988654 4456677788999999999999899999999998775444444333221111010 011111111 5
Q ss_pred EEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-eEEEEecCCCCEE
Q 007855 484 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VFRTLKCHEGVCI 562 (587)
Q Consensus 484 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~-~~~~l~~h~~~V~ 562 (587)
...|...|.|.+..+... .+..+..+.+| .+.+.+++|.+....|++|..|..+.+||+--.+ ....+.+|...|.
T Consensus 168 ~fvGd~~gqvt~lr~~~~-~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~ 244 (404)
T KOG1409|consen 168 AFVGDHSGQITMLKLEQN-GCQLITTFNGH--TGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQ 244 (404)
T ss_pred EEecccccceEEEEEeec-CCceEEEEcCc--ccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhh
Confidence 666677777777665432 23345667777 5678899999999999999999999999996543 3556788999999
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 563 GCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 563 ~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+...+ -...|++++.||.|-+||
T Consensus 245 ~l~~~~-~t~~l~S~~edg~i~~w~ 268 (404)
T KOG1409|consen 245 ALSYAQ-HTRQLISCGEDGGIVVWN 268 (404)
T ss_pred hhhhhh-hheeeeeccCCCeEEEEe
Confidence 888877 667899999999999997
No 260
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.18 E-value=4.4e-08 Score=114.96 Aligned_cols=245 Identities=11% Similarity=0.166 Sum_probs=164.1
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-c-------------CCceeeEEEecCCCeEEEEe-CCCeE
Q 007855 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-H-------------SKAVRDISFCNDGTKFLTAS-YDKNI 364 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h-------------~~~V~~l~fs~dg~~l~s~s-~Dg~I 364 (587)
..+++++.++.++++-+.++.|++||. .+..+..+.+ . -.....|+++++++.|+++. ..+.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~--~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDL--DGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeC--CCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence 467888766788888888999999997 4554444432 1 12357899999888766654 45789
Q ss_pred EEEECCCCcEEEEeec------------------CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc--
Q 007855 365 KYWDTETGQVIRTFST------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-- 424 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~------------------~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-- 424 (587)
+++|+.++.. .++.. -..+..+++.+. ++.++++...++.|++||..++.... +.+
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~--~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G 724 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV--NEKVYIAMAGQHQIWEYNISDGVTRV-FSGDG 724 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC--CCeEEEEECCCCeEEEEECCCCeEEE-EecCC
Confidence 9999887653 33211 123455677663 34677888888999999998775432 211
Q ss_pred -------------CCCCeeEEEEecCCCE-EEEEECCCCEEEEECCCCeEEEEee-c-------------------CCCc
Q 007855 425 -------------HLGAVNTITFVDNNRR-FVTSSDDKSLRVWEFGIPVVIKYIS-E-------------------PHMH 470 (587)
Q Consensus 425 -------------h~~~I~~i~~sp~~~~-l~s~s~Dg~I~iwd~~~~~~~~~~~-~-------------------~~~~ 470 (587)
.....+.|+++|++.. +++-+.++.|++||+.++....... . ....
T Consensus 725 ~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~ 804 (1057)
T PLN02919 725 YERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQ 804 (1057)
T ss_pred ccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhcc
Confidence 1124567999999885 4555667899999998654321110 0 0011
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee-cc----c---ccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AG----H---IVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~----~---~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
....++++++|.++++-+.++.|++||..++........- .+ . ..-.....++++++|+++++-+.++.|++
T Consensus 805 ~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irv 884 (1057)
T PLN02919 805 HPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRY 884 (1057)
T ss_pred CCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEE
Confidence 2458899999998888899999999998775433211100 00 0 00123557899999999888899999999
Q ss_pred EeCCCCee
Q 007855 543 WDWKSCKV 550 (587)
Q Consensus 543 wd~~t~~~ 550 (587)
||+.+++.
T Consensus 885 id~~~~~~ 892 (1057)
T PLN02919 885 LDLNKGEA 892 (1057)
T ss_pred EECCCCcc
Confidence 99988764
No 261
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.18 E-value=7.1e-09 Score=110.76 Aligned_cols=201 Identities=15% Similarity=0.157 Sum_probs=134.3
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCC---CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEE-EeCCC--e
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 363 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s-~s~Dg--~ 363 (587)
+.+..+...+.+.+|+|+ +++|+.++.. ..|++|++ .++... .+..+...+.+++|+|+|+.|+. .+.++ .
T Consensus 183 ~~l~~~~~~~~~p~~Spd-g~~la~~~~~~~~~~i~v~d~-~~g~~~-~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~ 259 (417)
T TIGR02800 183 QTITRSREPILSPAWSPD-GQKLAYVSFESGKPEIYVQDL-ATGQRE-KVASFPGMNGAPAFSPDGSKLAVSLSKDGNPD 259 (417)
T ss_pred EEeecCCCceecccCCCC-CCEEEEEEcCCCCcEEEEEEC-CCCCEE-EeecCCCCccceEECCCCCEEEEEECCCCCcc
Confidence 445567778999999999 7777766543 48999999 455433 33345566778999999997764 44444 5
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
|.+||+.+++...............|.+++. .++++....+ .|+++|+.+++.. .+..+...+..+.|+|++++|
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~--~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSPDGK--SIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECCCCC--EEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEE
Confidence 8899998876544433333333456666432 3444444333 5888888877643 344455667888999999999
Q ss_pred EEEECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC---eEEEEEcC
Q 007855 442 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIYSTR 499 (587)
Q Consensus 442 ~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg---~I~iwd~~ 499 (587)
+.++.++ .|.+||+.++... .+.. ........|+|++++|+..+.++ .+.+++..
T Consensus 337 ~~~~~~~~~~~i~~~d~~~~~~~-~l~~--~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~ 397 (417)
T TIGR02800 337 AFVHREGGGFNIAVMDLDGGGER-VLTD--TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD 397 (417)
T ss_pred EEEEccCCceEEEEEeCCCCCeE-EccC--CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC
Confidence 9988876 7899998875443 2322 12334568999999988887664 34555543
No 262
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.17 E-value=9.4e-09 Score=106.80 Aligned_cols=191 Identities=14% Similarity=0.206 Sum_probs=148.1
Q ss_pred cCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc---cCCceeeEEEe--------------------cCCCeEEEEeCCC
Q 007855 306 PKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG---HSKAVRDISFC--------------------NDGTKFLTASYDK 362 (587)
Q Consensus 306 p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~---h~~~V~~l~fs--------------------~dg~~l~s~s~Dg 362 (587)
|....++|....||.++||+. ..++....|.. -++..++..|. .+...++-|...|
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t-~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g 80 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDT-AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG 80 (541)
T ss_pred CchhheEeecCCCCeEEEEEc-cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence 334789999999999999999 56655555542 23444455442 1334677788899
Q ss_pred eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 363 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
.|.+|++..|+....+..+.....+....+..+...|.+++.|+.+..|+......++.+......+.+++++|++..++
T Consensus 81 ~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~ 160 (541)
T KOG4547|consen 81 SVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILL 160 (541)
T ss_pred cEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEE
Confidence 99999999999999998554433333333334556899999999999999999999999999999999999999999999
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCC-----CCEEEEE-ECCCeEEEEEcCC
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-----TNWLAAQ-SLDNQILIYSTRE 500 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~-----g~~l~~~-s~dg~I~iwd~~~ 500 (587)
+++ +.|++||+.+.+.+..+. +|.++|.++.|--+ |.+|+++ ..+..|.+|-+..
T Consensus 161 ~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 161 TAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred ecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 987 589999999999998885 69999999999876 6666554 4456677776543
No 263
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.17 E-value=1.1e-08 Score=96.44 Aligned_cols=243 Identities=12% Similarity=0.049 Sum_probs=157.5
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEec-----CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc--eEEEE
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP--YVVKL 389 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-----dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~--~~~~~ 389 (587)
....|.+|+++...+.+..+. ..|.|.| ...+|+.|+..|...+|...+.+....+-..+.. ..+.-
T Consensus 50 ~t~sv~i~~~y~N~~~iv~~y------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r 123 (344)
T KOG4532|consen 50 KTISVPINSHYSNPKGIVEFY------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKR 123 (344)
T ss_pred ceeeeEeccccCCchhhEEee------ecccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhh
Confidence 345678888865543333221 3344444 4458999999999999999877654433221111 11111
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC--eEEEEeecC
Q 007855 390 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP--VVIKYISEP 467 (587)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~ 467 (587)
..+ ...-+..++.|.++++.++.-+..........-.++++.++++++++++.++...|..|.+... ...+....+
T Consensus 124 ~cd--~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~ 201 (344)
T KOG4532|consen 124 YCD--LKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAP 201 (344)
T ss_pred hcc--cccceeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecc
Confidence 111 1123667777888888777654332222111123889999999999999999999999998653 233323334
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc-eecccccccceEEEEEcCCCC--EEEEEcCCCcEEEEe
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK-RFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWD 544 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~i~~l~~spdg~--~L~sgs~dG~I~vwd 544 (587)
....-.+..|+.+...+|+++.||++.|||++......... ..+.+ ..+.+..+.|++.|. +|+..-.-+.+.+.|
T Consensus 202 t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~-hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 202 TSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPH-HNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred cCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCC-CCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 55566788999999999999999999999998654332222 22233 467888899998764 466666778899999
Q ss_pred CCCCeeEEEEec-------CC-CCEEEEEEcC
Q 007855 545 WKSCKVFRTLKC-------HE-GVCIGCEWHP 568 (587)
Q Consensus 545 ~~t~~~~~~l~~-------h~-~~V~~v~~sp 568 (587)
+++++....+.. |. ..|.+..|+.
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~ 312 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNN 312 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccC
Confidence 999876555432 22 3367777776
No 264
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.16 E-value=2.9e-09 Score=111.95 Aligned_cols=275 Identities=13% Similarity=0.171 Sum_probs=187.8
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC-------C-------eeeEEEcccCCceeeEEEecCCCeEEEEeCC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS-------G-------KCMRTYMGHSKAVRDISFCNDGTKFLTASYD 361 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-------~-------~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D 361 (587)
.....|+.|+.. ..+++.|+.||.+++..+... + ..-+++.||...|.-+.|+...+.|-++..+
T Consensus 14 nvkL~c~~WNke-~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKE-SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEccc-CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence 345789999998 789999999999999977211 1 1225678999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEeec-C--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE-EEccCCCCeeEEEEecC
Q 007855 362 KNIKYWDTETGQVIRTFST-G--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ-EYDQHLGAVNTITFVDN 437 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~-~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~-~~~~h~~~I~~i~~sp~ 437 (587)
|.|.||-+-.|+....... . ..+..++|..++ ..++....||.|.+=.+...++-. .++ ......+.|+++
T Consensus 93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG---~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~l~hv~ws~D 167 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG---TKICIVYEDGAVIVGSVDGNRIWGKELK--GQLLAHVLWSED 167 (1189)
T ss_pred ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC---cEEEEEEccCCEEEEeeccceecchhcc--hheccceeeccc
Confidence 9999999887764433322 2 223344444433 457777888888776665443221 121 123446889999
Q ss_pred CCEEEEEECCCCEEEEECCCCe-------E---EEEeecCCCcceeEEEEe--------CCCCEEEEEECCCeEEEEEcC
Q 007855 438 NRRFVTSSDDKSLRVWEFGIPV-------V---IKYISEPHMHSMPSISLH--------PNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~~-------~---~~~~~~~~~~~i~~i~~s--------p~g~~l~~~s~dg~I~iwd~~ 499 (587)
.+.++.+-..|.+.+||....- + ..-........|..+.|. |+...|+++..+|.+.|..-.
T Consensus 168 ~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~e 247 (1189)
T KOG2041|consen 168 LEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSE 247 (1189)
T ss_pred HHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhc
Confidence 9999999899999999975421 1 111111223346666664 467789999999999887543
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcCC---------CcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCC
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLE 570 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d---------G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~ 570 (587)
+........ . .-.+..+.|+++|.+|++++.+ ..|+++. .-|+.+.+++.....|++++|-. .
T Consensus 248 ND~~Pvv~d--t----gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg-~ 319 (1189)
T KOG2041|consen 248 NDPEPVVVD--T----GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEG-T 319 (1189)
T ss_pred CCCCCeEEe--c----ccEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcC-C
Confidence 322111111 1 2456678999999999988753 2566665 56888999999999999999975 3
Q ss_pred CCEEEEEECCCcEEE
Q 007855 571 QSKVATCGWDGLIKY 585 (587)
Q Consensus 571 ~~~l~s~g~DG~I~i 585 (587)
+-.++ -..|+.|.+
T Consensus 320 gLriA-~Avdsfiyf 333 (1189)
T KOG2041|consen 320 GLRIA-IAVDSFIYF 333 (1189)
T ss_pred ceEEE-EEecceEEE
Confidence 43333 344666654
No 265
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.15 E-value=1.5e-08 Score=108.85 Aligned_cols=202 Identities=13% Similarity=0.127 Sum_probs=129.9
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCC---CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEE-EeCCC--e
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMD---TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDK--N 363 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~D---g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s-~s~Dg--~ 363 (587)
+.+..|...+...+|+|+ |+.|+..+.+ ..|.+|++ .++... .+....+.+....|+|+|+.|+. .+.++ .
T Consensus 192 ~~l~~~~~~~~~p~wSpD-G~~la~~s~~~~~~~l~~~~l-~~g~~~-~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~ 268 (430)
T PRK00178 192 VTLLQSREPILSPRWSPD-GKRIAYVSFEQKRPRIFVQNL-DTGRRE-QITNFEGLNGAPAWSPDGSKLAFVLSKDGNPE 268 (430)
T ss_pred eEEecCCCceeeeeECCC-CCEEEEEEcCCCCCEEEEEEC-CCCCEE-EccCCCCCcCCeEECCCCCEEEEEEccCCCce
Confidence 345567778999999999 7776655433 46889998 555433 23333445667999999998874 44454 6
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
|.+||+.+++...............|++++. .++++...++ .|+++++.+++..+.. ..........|+|+++.|
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~--~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGKDGR--TLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCEE
Confidence 8888999887654333333334456766543 4555544444 5778888877654332 122334457899999999
Q ss_pred EEEECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCC
Q 007855 442 VTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRE 500 (587)
Q Consensus 442 ~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~ 500 (587)
+..+..+ .|.+||+.++... .+... .......|+|+|++|+..+.+ ..|.++++..
T Consensus 346 ~~~~~~~~~~~l~~~dl~tg~~~-~lt~~--~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 346 VMVHRQDGNFHVAAQDLQRGSVR-ILTDT--SLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEEccCCceEEEEEECCCCCEE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 8877543 4888998877543 33222 122356899999998887654 3466667654
No 266
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.12 E-value=1.3e-08 Score=104.94 Aligned_cols=249 Identities=11% Similarity=0.184 Sum_probs=159.5
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC--eEEE-----EeCCCeEEEEECCCC
Q 007855 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT--KFLT-----ASYDKNIKYWDTETG 372 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~--~l~s-----~s~Dg~I~vWd~~t~ 372 (587)
.++.|+.+ .. |+.=-..+.|.+|++.......+.+ |...|+.+.++|.+. .+++ .+.-+.|+||...-.
T Consensus 129 W~~qfs~d-Es-l~arlv~nev~f~~~~~f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~ 204 (566)
T KOG2315|consen 129 WVPQFSID-ES-LAARLVSNEVQFYDLGSFKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEE 204 (566)
T ss_pred cccccccc-hh-hhhhhhcceEEEEecCCccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccc
Confidence 47788887 33 3333335789999984433333333 678899999999632 3332 345578999987633
Q ss_pred cEEEEeec----CCcceEEEEccCCCCCcEEEEEeC--C---------CcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 373 QVIRTFST----GKIPYVVKLNPDDDKQNILLAGMS--D---------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 373 ~~i~~~~~----~~~~~~~~~~~~~~~~~~l~sg~~--d---------g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
.....+.. ......+.|...+ ..+|+..+. | ..++++++......-.+ ...++|.+++|+++
T Consensus 205 ~~~~~~a~ksFFkadkvqm~WN~~g--t~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k~GPVhdv~W~~s 281 (566)
T KOG2315|consen 205 GQHQPVANKSFFKADKVQMKWNKLG--TALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LKEGPVHDVTWSPS 281 (566)
T ss_pred cccchhhhccccccceeEEEeccCC--ceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CCCCCceEEEECCC
Confidence 22222111 1122334444433 344444433 2 36888888743433333 35799999999999
Q ss_pred CCEEEEE--ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceecc
Q 007855 438 NRRFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAG 512 (587)
Q Consensus 438 ~~~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~ 512 (587)
++.|+++ -.-..+.|||++.... ..+ ..++-.++-|+|.|++|+.++.+ |.|-|||+.+...+.....
T Consensus 282 ~~EF~VvyGfMPAkvtifnlr~~~v-~df---~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--- 354 (566)
T KOG2315|consen 282 GREFAVVYGFMPAKVTIFNLRGKPV-FDF---PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--- 354 (566)
T ss_pred CCEEEEEEecccceEEEEcCCCCEe-EeC---CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---
Confidence 9887665 4566899999875543 333 44567889999999999988765 7899999988655533322
Q ss_pred cccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 513 HIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~~L~sgs~------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
...+-+.|+|||.++++++. |..++||+. +|.++..-.-.. ....+.|-|
T Consensus 355 ----~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhy-tG~~l~~~~f~s-EL~qv~W~P 410 (566)
T KOG2315|consen 355 ----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHY-TGSLLHEKMFKS-ELLQVEWRP 410 (566)
T ss_pred ----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEe-cCceeehhhhhH-hHhheeeee
Confidence 23344899999999998875 567899997 455544322111 456677766
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=3.3e-08 Score=106.28 Aligned_cols=201 Identities=11% Similarity=0.103 Sum_probs=124.7
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeC-CC--eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEE-EeCCCe--E
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGM-DT--KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKN--I 364 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~-Dg--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s-~s~Dg~--I 364 (587)
.+..+...+.+.+|+|+ |+.|+..+. ++ .|.+||+ .+++.. .+..........+|+|||+.|+. .+.++. |
T Consensus 212 ~l~~~~~~~~~p~wSPD-G~~La~~s~~~g~~~L~~~dl-~tg~~~-~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~I 288 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPD-GRKLAYVSFENRKAEIFVQDI-YTQVRE-KVTSFPGINGAPRFSPDGKKLALVLSKDGQPEI 288 (448)
T ss_pred EeecCCCcccCceECCC-CCEEEEEEecCCCcEEEEEEC-CCCCeE-EecCCCCCcCCeeECCCCCEEEEEEeCCCCeEE
Confidence 44556778999999999 666665443 33 5888888 444432 22222334457899999998875 455664 7
Q ss_pred EEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
.+||+.+++...............|++++. .++++...++ .|+++|+.+++..... ..........|+|++++|+
T Consensus 289 y~~dl~tg~~~~lt~~~~~~~~p~wSpDG~--~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~~~~SpDG~~l~ 365 (448)
T PRK04792 289 YVVDIATKALTRITRHRAIDTEPSWHPDGK--SLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLGGSITPDGRSMI 365 (448)
T ss_pred EEEECCCCCeEECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcCeeECCCCCEEE
Confidence 788998887654333333344566777543 4555554444 5777788777654322 2222344578999999988
Q ss_pred EEECC-C--CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-C--eEEEEEcCC
Q 007855 443 TSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRE 500 (587)
Q Consensus 443 s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-g--~I~iwd~~~ 500 (587)
..+.+ + .|.++|+.++... .+... .......|+|+|++|+..+.+ + .|.+++...
T Consensus 366 ~~~~~~g~~~I~~~dl~~g~~~-~lt~~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G 426 (448)
T PRK04792 366 MVNRTNGKFNIARQDLETGAMQ-VLTST--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG 426 (448)
T ss_pred EEEecCCceEEEEEECCCCCeE-EccCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 77653 3 4566787776543 23221 122345799999988776654 3 366677643
No 268
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.08 E-value=5.6e-08 Score=103.75 Aligned_cols=222 Identities=9% Similarity=0.063 Sum_probs=134.6
Q ss_pred ccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCc--EEEEEeCCC--eEEEEecCCCCeeeEEEcc
Q 007855 263 YQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGH--LILSAGMDT--KVKIWDVFNSGKCMRTYMG 338 (587)
Q Consensus 263 ~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~--~L~sgs~Dg--~I~iWd~~~~~~~~~~~~~ 338 (587)
+..++|+........ +.+..+...+.+-+|+|++.. ++++...+| .|.+.++ ..+.. +.+..
T Consensus 163 ~~~~l~~~d~dG~~~------------~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l-~~g~~-~~lt~ 228 (428)
T PRK01029 163 KQGELWSVDYDGQNL------------RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSL-ENPAG-KKILA 228 (428)
T ss_pred ccceEEEEcCCCCCc------------eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEEC-CCCCc-eEeec
Confidence 456777776543211 223334556677899999433 333554444 5666677 44433 33333
Q ss_pred cCCceeeEEEecCCCeEEEEeC-----CCeEEEEECCCC---cEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 339 HSKAVRDISFCNDGTKFLTASY-----DKNIKYWDTETG---QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~-----Dg~I~vWd~~t~---~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
..+.....+|+|||+.|+..+. +-.+.+|++..+ ......... .......|+|++. .++++...+|...
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~--~Laf~s~~~g~~~ 306 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGT--RLVFVSNKDGRPR 306 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCC--EEEEEECCCCCce
Confidence 4455567899999998887653 334555777653 333333222 2223457777553 4555554566544
Q ss_pred E--EeCCC-CcEEEEEccCCCCeeEEEEecCCCEEEEEECC---CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCE
Q 007855 410 Q--WDMNT-KEITQEYDQHLGAVNTITFVDNNRRFVTSSDD---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 483 (587)
Q Consensus 410 i--wD~~t-~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 483 (587)
+ +++.. +.....+..+...+....|+|+|+.|+..+.+ ..|.+||+.++...... . ....+....|+|+|++
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~-~~~~~~~p~wSpDG~~ 384 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLT-T-SPENKESPSWAIDSLH 384 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-C-CCCCccceEECCCCCE
Confidence 4 45542 23344455555677889999999998877654 36999999888664433 2 2345677899999998
Q ss_pred EEEEEC---CCeEEEEEcCCce
Q 007855 484 LAAQSL---DNQILIYSTRERF 502 (587)
Q Consensus 484 l~~~s~---dg~I~iwd~~~~~ 502 (587)
|+..+. ...|.++++.++.
T Consensus 385 L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 385 LVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred EEEEECCCCCceEEEEECCCCC
Confidence 876543 3568888887654
No 269
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.07 E-value=1e-09 Score=125.48 Aligned_cols=193 Identities=12% Similarity=0.256 Sum_probs=145.6
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
.++.|-..|.++.-+|. ..+.+||+.||.|++|.. ..+..+..+. .-...|+.+.|+.+|+.+..+..||.+.+|.+
T Consensus 2203 ~~k~~v~~v~r~~sHp~-~~~Yltgs~dgsv~~~~w-~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPS-DPYYLTGSQDGSVRMFEW-GHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred EeecccCceeeecCCCC-CceEEecCCCceEEEEec-cCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeeccc
Confidence 34456677888888888 788999999999999998 5555555443 23388999999999999999999999999998
Q ss_pred CCCcEEEEeecCCcc-eEEEEccCCCCCcEEEEEe---CCCcEEEEeCCCC---cEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 370 ETGQVIRTFSTGKIP-YVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 370 ~t~~~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~---~dg~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
. .++....+.+... .-+.|.. .++++++ .++.+.+||..-. .++. ..|.+.++++++.|....|+
T Consensus 2281 ~-pk~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qlli 2352 (2439)
T KOG1064|consen 2281 S-PKPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLI 2352 (2439)
T ss_pred C-CcceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEE
Confidence 7 4444444433222 2233322 2344433 4689999997532 3344 78999999999999999999
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
+|+.+|.|++||++..+.+..+.. ++ ...+|++++..|.|+||++.....+
T Consensus 2353 sggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll 2403 (2439)
T KOG1064|consen 2353 SGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLL 2403 (2439)
T ss_pred ecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchh
Confidence 999999999999998777655532 44 5678999999999999999765444
No 270
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=99.06 E-value=2e-07 Score=91.21 Aligned_cols=221 Identities=17% Similarity=0.144 Sum_probs=146.5
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEE--EecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDIS--FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~--fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
+|+|..||. .+++.+....- ...+.... ..+++.++++++.++.|..||..+|+.+..+.............
T Consensus 2 ~g~l~~~d~-~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~---- 75 (238)
T PF13360_consen 2 DGTLSALDP-RTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVVD---- 75 (238)
T ss_dssp TSEEEEEET-TTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEEE----
T ss_pred CCEEEEEEC-CCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeeec----
Confidence 688999998 78888877753 11233333 33366778888999999999999999999888654432222222
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEE-ccCC---CCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcc
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEY-DQHL---GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~-~~h~---~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 471 (587)
...+++++.++.|+.+|+.+|+.+... .... ...........+..++++..++.|..+|..++..+..........
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 135777778889999999999998874 3221 112222333347889999989999999999999877765422111
Q ss_pred ---------eeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 472 ---------MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 472 ---------i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
+..-.+..++ .+++++.++.+..+|+.++..+- .....+ +. ......+..|++++.++.|.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~------~~-~~~~~~~~~l~~~~~~~~l~~ 226 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISG------IY-SLPSVDGGTLYVTSSDGRLYA 226 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-------EC-ECEECCCTEEEEEETTTEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCC------cc-CCceeeCCEEEEEeCCCEEEE
Confidence 1122222244 77777777764444998887442 111111 11 124567888888889999999
Q ss_pred EeCCCCeeEEE
Q 007855 543 WDWKSCKVFRT 553 (587)
Q Consensus 543 wd~~t~~~~~~ 553 (587)
||+++|+.+..
T Consensus 227 ~d~~tG~~~W~ 237 (238)
T PF13360_consen 227 LDLKTGKVVWQ 237 (238)
T ss_dssp EETTTTEEEEE
T ss_pred EECCCCCEEeE
Confidence 99999987653
No 271
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.06 E-value=9.2e-08 Score=110.30 Aligned_cols=273 Identities=11% Similarity=0.126 Sum_probs=176.8
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEE----ecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIW----DVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iW----d~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
....|.++.|.++ ...|+.+..+|.|.+. +. ....+.....-...|.+++||||+..|+.++.+++|.+.. .
T Consensus 74 ~~~~ivs~~yl~d-~~~l~~~~~~Gdi~~~~~~~~~--~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~ 149 (928)
T PF04762_consen 74 PNDKIVSFQYLAD-SESLCIALASGDIILVREDPDP--DEDEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMT-R 149 (928)
T ss_pred CCCcEEEEEeccC-CCcEEEEECCceEEEEEccCCC--CCceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEe-c
Confidence 4568999999999 7788888889999999 44 2333333444567899999999999999999999998874 5
Q ss_pred CCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE--------------EEEEccCCCCeeEEEEec
Q 007855 371 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--------------TQEYDQHLGAVNTITFVD 436 (587)
Q Consensus 371 t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~--------------~~~~~~h~~~I~~i~~sp 436 (587)
+..++....... ...+....++.+...+=..|.=..++. ...+. +...-..|+|-.
T Consensus 150 ~fd~i~E~~l~~---------~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRG 219 (928)
T PF04762_consen 150 DFDPISEVPLDS---------DDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRG 219 (928)
T ss_pred cceEEEEeecCc---------cccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECC
Confidence 556665554321 111112233333222222221111111 01122 445667899999
Q ss_pred CCCEEEEEEC---C---CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC---CCeEEEEEcCCceeeccc
Q 007855 437 NNRRFVTSSD---D---KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQLNKK 507 (587)
Q Consensus 437 ~~~~l~s~s~---D---g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~---dg~I~iwd~~~~~~~~~~ 507 (587)
||.+|++.+- . ..|+||+-. +. +....++-.+--.+++|.|+|++||+... ...|.+|.-+.- +-..+
T Consensus 220 DG~yFAVss~~~~~~~~R~iRVy~Re-G~-L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL-rhgeF 296 (928)
T PF04762_consen 220 DGEYFAVSSVEPETGSRRVIRVYSRE-GE-LQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL-RHGEF 296 (928)
T ss_pred CCcEEEEEEEEcCCCceeEEEEECCC-ce-EEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc-EeeeE
Confidence 9999999875 2 479999965 43 33444445555678999999999998864 355777764332 21111
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE--EEEecC-CCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF--RTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~--~~l~~h-~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
.++.......+..+.|++|+..||....+. |.+|-..+..-+ +.+... ...+..+.|+|.....|.....+|.+.
T Consensus 297 -~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~ 374 (928)
T PF04762_consen 297 -TLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYE 374 (928)
T ss_pred -ecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEE
Confidence 111112245678899999999999987664 999998886543 333322 234556999997777788887767765
Q ss_pred Ec
Q 007855 585 YW 586 (587)
Q Consensus 585 iW 586 (587)
++
T Consensus 375 ~~ 376 (928)
T PF04762_consen 375 IY 376 (928)
T ss_pred EE
Confidence 54
No 272
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=99.02 E-value=5.9e-07 Score=88.72 Aligned_cols=223 Identities=19% Similarity=0.186 Sum_probs=146.3
Q ss_pred eEEEec-CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc
Q 007855 345 DISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 423 (587)
Q Consensus 345 ~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~ 423 (587)
+++|.+ ++.++++-...+.|..|+..++.... +.... +..+.+.... ..|+++.. +.+.++|+.+++......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~-~~G~~~~~~~---g~l~v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG-PNGMAFDRPD---GRLYVADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS-EEEEEEECTT---SEEEEEET-TCEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC-CceEEEEccC---CEEEEEEc-CceEEEecCCCcEEEEee
Confidence 578888 67777776678999999998876543 33333 5555555222 24555555 445566999886544433
Q ss_pred c-----CCCCeeEEEEecCCCEEEEEECC--------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEE-EEEC
Q 007855 424 Q-----HLGAVNTITFVDNNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSL 489 (587)
Q Consensus 424 ~-----h~~~I~~i~~sp~~~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~~s~ 489 (587)
. .....+.+++.++|+..++.... |.|..++.. +...... ........|+|+|+++.|+ +-+.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~ 154 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA--DGLGFPNGIAFSPDGKTLYVADSF 154 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE--EEESSEEEEEEETTSSEEEEEETT
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEe--cCcccccceEECCcchheeecccc
Confidence 2 34668899999999977777654 457777777 4433333 2345568999999998776 5567
Q ss_pred CCeEEEEEcCCcee-ecccceec-ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEc
Q 007855 490 DNQILIYSTRERFQ-LNKKKRFA-GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 490 dg~I~iwd~~~~~~-~~~~~~~~-~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~s 567 (587)
.+.|..|++..... +.....+. .....+..-.+++..+|++.++....+.|.+++.. |+++..+......+++|+|.
T Consensus 155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence 78899999853222 22222221 11111346679999999998888889999999976 99998888776689999995
Q ss_pred -CCCCCEEEEE
Q 007855 568 -PLEQSKVATC 577 (587)
Q Consensus 568 -p~~~~~l~s~ 577 (587)
++...+++|.
T Consensus 234 g~~~~~L~vTt 244 (246)
T PF08450_consen 234 GPDGKTLYVTT 244 (246)
T ss_dssp STTSSEEEEEE
T ss_pred CCCCCEEEEEe
Confidence 4334444543
No 273
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.7e-07 Score=108.43 Aligned_cols=239 Identities=15% Similarity=0.167 Sum_probs=153.8
Q ss_pred eeEEEecC-CCeEEEEeCCCeEEEEECCCCcEEEEeec-C--------------CcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 344 RDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFST-G--------------KIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 344 ~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~--------------~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
..+++++. +..+++-+.++.|++||.. +..+..+.. + ..+..+++.+++ ..++++-..++.
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~g--n~LYVaDt~n~~ 647 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKK--NLLYVADTENHA 647 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCC--CEEEEEeCCCce
Confidence 46788874 6677777778899999986 444444332 1 124556665532 234455555678
Q ss_pred EEEEeCCCCcEEEEEccC-----------------CCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEEeecC--
Q 007855 408 IVQWDMNTKEITQEYDQH-----------------LGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKYISEP-- 467 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h-----------------~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-- 467 (587)
|+++|+.++.. ..+.+. ......++++| ++..+++.+.++.|++||...+.........
T Consensus 648 Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~ 726 (1057)
T PLN02919 648 LREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYE 726 (1057)
T ss_pred EEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCcc
Confidence 99999887653 222110 12346799999 5666677778889999998776543221110
Q ss_pred -----------CCcceeEEEEeCCCCEE-EEEECCCeEEEEEcCCceeeccc----------ceeccc------ccccce
Q 007855 468 -----------HMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKK----------KRFAGH------IVAGYA 519 (587)
Q Consensus 468 -----------~~~~i~~i~~sp~g~~l-~~~s~dg~I~iwd~~~~~~~~~~----------~~~~~~------~~~~~i 519 (587)
.......|+++|++++| ++-+.++.|++||+.++...... ..+... ..-...
T Consensus 727 ~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P 806 (1057)
T PLN02919 727 RNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP 806 (1057)
T ss_pred ccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCC
Confidence 11235679999999855 45566799999998764321000 000000 000123
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-------------cCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 520 ~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~-------------~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
..++++++|.++++-..+++|++||..++....... +.-....++++++ ++.++++.+.+++|++|
T Consensus 807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvi 885 (1057)
T PLN02919 807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYL 885 (1057)
T ss_pred ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEE
Confidence 468999999998899999999999998876653321 1112567899999 66788988899999999
Q ss_pred C
Q 007855 587 D 587 (587)
Q Consensus 587 D 587 (587)
|
T Consensus 886 d 886 (1057)
T PLN02919 886 D 886 (1057)
T ss_pred E
Confidence 6
No 274
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=9.4e-09 Score=103.29 Aligned_cols=256 Identities=16% Similarity=0.192 Sum_probs=187.2
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-CC-eeeEEEcccCCceeeEEEecCCCeEEEEeC-CCeEEEEECCC
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SG-KCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTET 371 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~-~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-Dg~I~vWd~~t 371 (587)
|+..|+.+.... .+++++++.||.++.|.-.. .+ +.+..+..|...|.+++.+-++.++.|.+. |..++++|+++
T Consensus 8 hrd~i~hv~~tk--a~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn 85 (558)
T KOG0882|consen 8 HRDVITHVFPTK--AKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVEN 85 (558)
T ss_pred ccceeeeEeeeh--hheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeec
Confidence 778888886554 48999999999999998633 22 445566788999999999999999999887 99999999998
Q ss_pred CcEEEEeecCCcceEEEEccCCC-CC-cEEEEEeCCCcEEEEeCCCCc--EEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 372 GQVIRTFSTGKIPYVVKLNPDDD-KQ-NILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 372 ~~~i~~~~~~~~~~~~~~~~~~~-~~-~~l~sg~~dg~I~iwD~~t~~--~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
-..+.-+.....+..+.|..... .- .+.+....++.|.++|-.... ....-.-|..+|.++.+++-+..+++....
T Consensus 86 ~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~ 165 (558)
T KOG0882|consen 86 FDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDIS 165 (558)
T ss_pred cchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecccc
Confidence 88777777666666555544322 11 233444567899999987653 233334599999999999999999999999
Q ss_pred CCEEEEECCC----CeE--EEEe--------ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee---
Q 007855 448 KSLRVWEFGI----PVV--IKYI--------SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF--- 510 (587)
Q Consensus 448 g~I~iwd~~~----~~~--~~~~--------~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~--- 510 (587)
|.|.-|.... +.. ...+ .........++.|+|++..+.+-+.|..|+++..+++..+..+...
T Consensus 166 gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~ 245 (558)
T KOG0882|consen 166 GMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTD 245 (558)
T ss_pred ceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchh
Confidence 9999998763 111 0000 0113445789999999999999999999999999887544332110
Q ss_pred --------------------------cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 511 --------------------------AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 511 --------------------------~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
..+ .....+.+.|...|++|+-|+-=| |++.++.++.+.+.+
T Consensus 246 ~~~q~ks~y~l~~VelgRRmaverelek~-~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~ 313 (558)
T KOG0882|consen 246 AQYQPKSPYGLMHVELGRRMAVERELEKH-GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRIL 313 (558)
T ss_pred hhhccccccccceeehhhhhhHHhhHhhh-cCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEe
Confidence 001 122334578999999999988765 889999888776654
No 275
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.00 E-value=1.7e-08 Score=96.92 Aligned_cols=271 Identities=20% Similarity=0.345 Sum_probs=167.3
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC----eeeEEEcccC------------CceeeEEEecCC--CeEEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG----KCMRTYMGHS------------KAVRDISFCNDG--TKFLT 357 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~h~------------~~V~~l~fs~dg--~~l~s 357 (587)
..-|+++.|... |.+|++|...|.|.+|.-.... +....|++|. ..|..|.|..++ ..|+.
T Consensus 26 ad~ItaVefd~t-g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 26 ADKITAVEFDET-GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred cceeeEEEeccc-cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 346999999988 9999999999999999864433 2233455664 347888887743 46777
Q ss_pred EeCCCeEEEEECCCCcEE--EEeec--------CCcceE---EEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-c
Q 007855 358 ASYDKNIKYWDTETGQVI--RTFST--------GKIPYV---VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D 423 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i--~~~~~--------~~~~~~---~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-~ 423 (587)
.+.|++|++|.+...... ..-.. +..... +.. |.-.....++++. +.+.+ .
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~l-prls~hd~iiaa~--------------p~rvyaN 169 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLL-PRLSEHDEIIAAK--------------PCRVYAN 169 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhc-ccccccceEEEec--------------cceeccc
Confidence 789999999998654221 11110 000000 000 0000000111111 11222 4
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEee--cCC-----CcceeEEEEeCCC-CEEEEEECCCeEEE
Q 007855 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPH-----MHSMPSISLHPNT-NWLAAQSLDNQILI 495 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~-----~~~i~~i~~sp~g-~~l~~~s~dg~I~i 495 (587)
.|...|++|.|..+...++++ +|-.|.+|++........+. .|| +.-|++..|+|.. ..+...+..|.|++
T Consensus 170 aH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl 248 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKL 248 (460)
T ss_pred cceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEe
Confidence 688899999999888777665 56789999987643322221 122 2347888999954 56777788999999
Q ss_pred EEcCCcee-ecccceec----cc------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-eeEEEEecCCC----
Q 007855 496 YSTRERFQ-LNKKKRFA----GH------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEG---- 559 (587)
Q Consensus 496 wd~~~~~~-~~~~~~~~----~~------~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~-~~~~~l~~h~~---- 559 (587)
-|++.... ....+.+. +. .....|..+.|+++|+|+++-+.. +|.|||++.. .++.++..|..
T Consensus 249 ~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiwDvnm~k~pikTi~~h~~l~~~ 327 (460)
T COG5170 249 NDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIWDVNMAKNPIKTIPMHCDLMDE 327 (460)
T ss_pred hhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEEecccccCCceeechHHHHHHH
Confidence 99984321 11111111 00 012457789999999999988765 7999999764 56777765532
Q ss_pred --------CE---EEEEEcCCCCCEEEEEECCCcEEE
Q 007855 560 --------VC---IGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 560 --------~V---~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.| ..+.|+. +.+.+++|+.....-|
T Consensus 328 l~d~YEnDaifdkFeisfSg-d~~~v~sgsy~NNfgi 363 (460)
T COG5170 328 LNDVYENDAIFDKFEISFSG-DDKHVLSGSYSNNFGI 363 (460)
T ss_pred HHhhhhccceeeeEEEEecC-Ccccccccccccceee
Confidence 22 3466776 5556777776655444
No 276
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.99 E-value=3.8e-07 Score=96.72 Aligned_cols=260 Identities=9% Similarity=0.076 Sum_probs=165.0
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
+..++.++.+|.+..+|. .+++.+............... .+..++.++.++.|..+|..+|+.+..+..........
T Consensus 120 ~~~v~v~~~~g~l~ald~-~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNA-EDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 456677888999999998 788888776543321111122 24467778889999999999999998886542211000
Q ss_pred --EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC-------CeeEEEEec--CCCEEEEEECCCCEEEEECCC
Q 007855 389 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-------AVNTITFVD--NNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 389 --~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~-------~I~~i~~sp--~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
..|.-. ...+++++.+|.+..+|..+++.+........ ....+..+| .+..+++++.+|.+..+|..+
T Consensus 197 ~~~sP~v~-~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~t 275 (394)
T PRK11138 197 GESAPATA-FGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRS 275 (394)
T ss_pred CCCCCEEE-CCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCC
Confidence 111101 12477788899999999999987655431110 011111111 245677788899999999999
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
++.+-...... ...+. ..+..|++++.+|.|..+|..++..+-......+......+ + .+.+|+.++.+
T Consensus 276 G~~~W~~~~~~---~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~----v--~~g~l~v~~~~ 344 (394)
T PRK11138 276 GQIVWKREYGS---VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPV----L--YNGYLVVGDSE 344 (394)
T ss_pred CCEEEeecCCC---ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCE----E--ECCEEEEEeCC
Confidence 87765442211 11222 24667888889999999999887654332222111111111 1 25678889999
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCEEE-EEEcCCCCCEEEEEECCCcEEEc
Q 007855 538 GKCWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 538 G~I~vwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
|.|++.|..+|+.+...+.....+.+ ..+. + ..|+.++.||.|..+
T Consensus 345 G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~-~~l~v~t~~G~l~~~ 391 (394)
T PRK11138 345 GYLHWINREDGRFVAQQKVDSSGFLSEPVVA--D-DKLLIQARDGTVYAI 391 (394)
T ss_pred CEEEEEECCCCCEEEEEEcCCCcceeCCEEE--C-CEEEEEeCCceEEEE
Confidence 99999999999998888754433332 2232 3 378888999998765
No 277
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.99 E-value=1.4e-08 Score=98.80 Aligned_cols=200 Identities=17% Similarity=0.350 Sum_probs=137.8
Q ss_pred CCeEEEEEccCC-CcEEEEEeCCCeEEEEecCCCCeee----------------------------------EEE-cccC
Q 007855 297 KGVSAIRFFPKY-GHLILSAGMDTKVKIWDVFNSGKCM----------------------------------RTY-MGHS 340 (587)
Q Consensus 297 ~~V~~l~~sp~~-g~~L~sgs~Dg~I~iWd~~~~~~~~----------------------------------~~~-~~h~ 340 (587)
..|..|+|.+++ ...++..+.|.+|++|.++..+... +.+ ..|.
T Consensus 85 EKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHt 164 (433)
T KOG1354|consen 85 EKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHT 164 (433)
T ss_pred hhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccce
Confidence 468999998863 3466777889999999884322111 111 2588
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-EEEE--eecC------CcceEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRT--FSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-~i~~--~~~~------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
--|.+|+++.|+..++++. |=.|.+|+++--. .... ++.. ..+....|+|.. -++|+..++.|.|++.
T Consensus 165 yhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~--cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 165 YHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHH--CNVFVYSSSKGTIRLC 241 (433)
T ss_pred eEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhH--ccEEEEecCCCcEEEe
Confidence 8899999999999998874 6789999987432 2111 1111 123445566643 4789999999999999
Q ss_pred eCCCCcEEEE----------------EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-CeEEEEeecCC------
Q 007855 412 DMNTKEITQE----------------YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPH------ 468 (587)
Q Consensus 412 D~~t~~~~~~----------------~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~------ 468 (587)
|++...+... +..--..|..+.|+++|+++++-+. -+|++||+.. .+++..+.. |
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~v-h~~lr~k 319 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPV-HEYLRSK 319 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEee-hHhHHHH
Confidence 9995432111 1122356889999999999987654 6899999943 344433321 1
Q ss_pred ------C---cceeEEEEeCCCCEEEEEECCCeEEEEEcCCc
Q 007855 469 ------M---HSMPSISLHPNTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 469 ------~---~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
. ..-..++|+.++.++++|+..+.+++|++..+
T Consensus 320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1 12345789989999999999999999996544
No 278
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.97 E-value=7.1e-09 Score=109.56 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=189.4
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-cCCceeeEEEecCC--CeEEEEeCCCeEEEEECCC-
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-HSKAVRDISFCNDG--TKFLTASYDKNIKYWDTET- 371 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fs~dg--~~l~s~s~Dg~I~vWd~~t- 371 (587)
.+++.++..+|. |+-++.++.-|. .+-|+.....+.+-+.. ..-.|-++.|++.. .+-++......-.+|++..
T Consensus 24 ~~~~~a~si~p~-grdi~lAsr~gl-~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s 101 (1081)
T KOG0309|consen 24 DGGFNAVSINPS-GRDIVLASRQGL-YIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS 101 (1081)
T ss_pred cCcccceeeccc-cchhhhhhhcCe-EEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence 457888999999 777888887664 45566555555544432 12347788888743 2344444445667888753
Q ss_pred -CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 372 -GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 372 -~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
.+.+.-+..++...+..+...+....++++++.|-.+..||+++. ..+..+..-......+.|+-....+++.+..+.
T Consensus 102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~ 181 (1081)
T KOG0309|consen 102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND 181 (1081)
T ss_pred CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence 345555556666666666666666789999999999999999986 445555555667788999977777777788889
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
|++||++.+.........|...|..+.|.. ....+.+++.|++|.+||............ .....+..-++-|-|
T Consensus 182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~v----tt~~piw~~r~~Pfg 257 (1081)
T KOG0309|consen 182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTV----TTNFPIWRGRYLPFG 257 (1081)
T ss_pred eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceec----cccCcceeccccccC
Confidence 999999987655555555777888888765 335688899999999999764322111111 112334444455533
Q ss_pred C--EEEEEcC---------CCcEEEEeCCC-CeeEEEEecCCCCEEEEEEcCCC---------CCEEEEEECCCcEEEc
Q 007855 529 R--FVMSGDG---------EGKCWFWDWKS-CKVFRTLKCHEGVCIGCEWHPLE---------QSKVATCGWDGLIKYW 586 (587)
Q Consensus 529 ~--~L~sgs~---------dG~I~vwd~~t-~~~~~~l~~h~~~V~~v~~sp~~---------~~~l~s~g~DG~I~iW 586 (587)
. ++.-.-+ +.....|+..+ .+.+.+|.+|...|....|-... .-.|+|-+.|..+++|
T Consensus 258 ~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW 336 (1081)
T KOG0309|consen 258 EGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW 336 (1081)
T ss_pred ceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence 3 2221111 22223344443 36799999999999888886532 2279999999999999
No 279
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.97 E-value=6.6e-08 Score=92.57 Aligned_cols=202 Identities=16% Similarity=0.181 Sum_probs=137.4
Q ss_pred CCCCeEEEEEcc--CCCc-EEEEEeCCCeEEEEecCCCCeeeEEEcccC------CceeeEEEecCCCeEEEEeCCCeEE
Q 007855 295 HTKGVSAIRFFP--KYGH-LILSAGMDTKVKIWDVFNSGKCMRTYMGHS------KAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 295 H~~~V~~l~~sp--~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~------~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
-+..+..+.|.. .++. .|+-+...|.|.++.. ........+.+-+ ....++.|++.+..++++-.+|.+.
T Consensus 68 dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~-~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~ 146 (339)
T KOG0280|consen 68 DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRN-DEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSIS 146 (339)
T ss_pred cccccceeeeeeccCCccceeeeccccceEEEEee-ccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEE
Confidence 445677777763 3355 6677788899999987 3333333333321 1245778999999999999999998
Q ss_pred EEECCCCcEEE--EeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCC-CCcEEEE-EccCCCCeeEEEEec-CCC
Q 007855 366 YWDTETGQVIR--TFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQE-YDQHLGAVNTITFVD-NNR 439 (587)
Q Consensus 366 vWd~~t~~~i~--~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-t~~~~~~-~~~h~~~I~~i~~sp-~~~ 439 (587)
+-+........ .++.+. ..+...|... ..+++++|+.|+.+..||++ .++.+.. .+.|...|.+|.-+| ...
T Consensus 147 ~v~~t~~~le~vq~wk~He~E~Wta~f~~~--~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~ 224 (339)
T KOG0280|consen 147 GVYETEMVLEKVQTWKVHEFEAWTAKFSDK--EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPT 224 (339)
T ss_pred EEecceeeeeecccccccceeeeeeecccC--CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCc
Confidence 66554443333 444333 2344555443 44899999999999999999 3344433 556889999999885 577
Q ss_pred EEEEEECCCCEEEEECCC-CeEEEEeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCc
Q 007855 440 RFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~ 501 (587)
++++|+.|-.|++||.++ ++++..- ...+.|..+.++|.-. .|+.+++-+-.+|-+....
T Consensus 225 ~I~TGsYDe~i~~~DtRnm~kPl~~~--~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~ 286 (339)
T KOG0280|consen 225 YIATGSYDECIRVLDTRNMGKPLFKA--KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDK 286 (339)
T ss_pred eEEEeccccceeeeehhcccCccccC--ccccceEEEEecchhhhHHHHHHHhcCceEEEeccc
Confidence 899999999999999984 5555433 3558899999999532 3344444445677766543
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.96 E-value=6.2e-07 Score=95.25 Aligned_cols=225 Identities=17% Similarity=0.148 Sum_probs=137.9
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCe-EEEEeCC---CeEEEEECCCCcEEEEeecCCcceEEEEccCCCC
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTK-FLTASYD---KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDK 395 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~-l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~ 395 (587)
.|.+-|. .+...+.+.... .+....|+|+|+. ++..+.+ ..|.++|+.+++...............|+|++.
T Consensus 170 ~l~~~d~--dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~- 245 (419)
T PRK04043 170 NIVLADY--TLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGS- 245 (419)
T ss_pred eEEEECC--CCCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCC-
Confidence 4444444 333333333333 7788999999985 6654443 568899999987766555444445567877654
Q ss_pred CcEEEEEeCC--CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC-C--CEEEEECCCCeEEEEeecCCCc
Q 007855 396 QNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 396 ~~~l~sg~~d--g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
.++++.+.+ ..|.++|+.++...+ +..+........|+|+|+.|+..+.. + .|.++|+..+...+......
T Consensus 246 -~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~-- 321 (419)
T PRK04043 246 -KLLLTMAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK-- 321 (419)
T ss_pred -EEEEEEccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--
Confidence 455555444 568888988876443 44444434566899999988777643 2 58888888776644332211
Q ss_pred ceeEEEEeCCCCEEEEEECC---------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC-C--
Q 007855 471 SMPSISLHPNTNWLAAQSLD---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-G-- 538 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~d---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d-G-- 538 (587)
....|+|+|++|+..+.. ..|.+.++.++.... +.. .+ ......|+|||+.|+..+.. +
T Consensus 322 --~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~-~~-----~~~~p~~SPDG~~I~f~~~~~~~~ 392 (419)
T PRK04043 322 --NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTA-NG-----VNQFPRFSSDGGSIMFIKYLGNQS 392 (419)
T ss_pred --cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCC-CC-----CcCCeEECCCCCEEEEEEccCCcE
Confidence 124899999998887654 368888887664321 111 11 12247899999988765533 2
Q ss_pred cEEEEeCCCCeeEEEEecCCCCEE
Q 007855 539 KCWFWDWKSCKVFRTLKCHEGVCI 562 (587)
Q Consensus 539 ~I~vwd~~t~~~~~~l~~h~~~V~ 562 (587)
.|.+.++... ....+....+.+.
T Consensus 393 ~L~~~~l~g~-~~~~l~~~~g~~~ 415 (419)
T PRK04043 393 ALGIIRLNYN-KSFLFPLKVGKIQ 415 (419)
T ss_pred EEEEEecCCC-eeEEeecCCCccC
Confidence 3667777543 3333433334343
No 281
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=4.9e-06 Score=82.44 Aligned_cols=269 Identities=12% Similarity=0.203 Sum_probs=169.2
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeC---CCeEEEEecCCC-Ceee--EEEcccCCceeeEEEecCCCeEEEEeCC-CeEEE
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVFNS-GKCM--RTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKY 366 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~-~~~~--~~~~~h~~~V~~l~fs~dg~~l~s~s~D-g~I~v 366 (587)
.+...++-|+|+|+ .+.|.++.. +|.|.-|.+... +.+. .....-..+-..++++++|++|+++.+. |.|.+
T Consensus 37 ~~~~nptyl~~~~~-~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v 115 (346)
T COG2706 37 AELGNPTYLAVNPD-QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSV 115 (346)
T ss_pred cccCCCceEEECCC-CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEE
Confidence 46678899999999 777877754 578888888433 4332 2222223334889999999999999874 88999
Q ss_pred EECCC-CcE---EEEeecCCc----------ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc---cCCCCe
Q 007855 367 WDTET-GQV---IRTFSTGKI----------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAV 429 (587)
Q Consensus 367 Wd~~t-~~~---i~~~~~~~~----------~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~---~h~~~I 429 (587)
+-+.. |.+ +..+..... .....+.|+.. .++++.-.-.+|.+|++..+.+...-. .....-
T Consensus 116 ~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~--~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GP 193 (346)
T COG2706 116 YPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGR--YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGP 193 (346)
T ss_pred EEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCC--EEEEeecCCceEEEEEcccCccccccccccCCCCCc
Confidence 98865 432 223322222 34555555432 344444455789999999776543221 344567
Q ss_pred eEEEEecCCCEEEEEE-CCCCEEEEECCCC-e---EEEEee---c--CCCcceeEEEEeCCCCEEEEEEC-CCeEEEEEc
Q 007855 430 NTITFVDNNRRFVTSS-DDKSLRVWEFGIP-V---VIKYIS---E--PHMHSMPSISLHPNTNWLAAQSL-DNQILIYST 498 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~-~---~~~~~~---~--~~~~~i~~i~~sp~g~~l~~~s~-dg~I~iwd~ 498 (587)
+.|.|+|++++..+.+ -+++|.+|.+... . .+..+. . ........|.++++|++|.++.. ...|.+|.+
T Consensus 194 RHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V 273 (346)
T COG2706 194 RHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSV 273 (346)
T ss_pred ceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEE
Confidence 8899999999876655 4889999998773 1 222221 1 12345677889999999988754 357888877
Q ss_pred CCc-eeecccceecccccccceEEEEEcCCCCEEEEEcCCC-cEEEEeC--CCCeeEEEEe-cCCCCEEEEEEc
Q 007855 499 RER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDW--KSCKVFRTLK-CHEGVCIGCEWH 567 (587)
Q Consensus 499 ~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG-~I~vwd~--~t~~~~~~l~-~h~~~V~~v~~s 567 (587)
... ..+........+ ...-..+.|++.|++|+++..++ .|.+|.. .+|++-.... .......|+.|.
T Consensus 274 ~~~~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 274 DPDGGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred cCCCCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence 543 222222222211 12245689999999999887654 4777765 4566544433 233445566664
No 282
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.95 E-value=3.2e-06 Score=83.73 Aligned_cols=266 Identities=11% Similarity=0.205 Sum_probs=171.6
Q ss_pred CCeEEEEecC-CCCee-eEEEcccCCceeeEEEecCCCeEEEEeCC---CeEEEEECCC--CcE--EEEee-cCCcceEE
Q 007855 318 DTKVKIWDVF-NSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYD---KNIKYWDTET--GQV--IRTFS-TGKIPYVV 387 (587)
Q Consensus 318 Dg~I~iWd~~-~~~~~-~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t--~~~--i~~~~-~~~~~~~~ 387 (587)
+.-|.+|++. ..++. ...+..+...++-|+|++++++|.++..+ |.|..|.++. |.. +.... .+..+.-+
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv 94 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV 94 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence 4669999994 22222 22233567788999999999999988654 7787777764 443 22222 33444556
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEE--EEccCCCC----------eeEEEEecCCCEEEEEEC-CCCEEEE
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQ--EYDQHLGA----------VNTITFVDNNRRFVTSSD-DKSLRVW 453 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~--~~~~h~~~----------I~~i~~sp~~~~l~s~s~-Dg~I~iw 453 (587)
++..+ +..++.+....|.|.++-++. |.+.. ....|.+. +.+..+.|++++|+++.. --.|.+|
T Consensus 95 svd~~--g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y 172 (346)
T COG2706 95 SVDED--GRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLY 172 (346)
T ss_pred EECCC--CCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEE
Confidence 66554 335666666779999999976 43221 12235555 889999999999988854 2369999
Q ss_pred ECCCCeEEEEe--ecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCc-eeecccce---ecc-cccccceEEEEEc
Q 007855 454 EFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRER-FQLNKKKR---FAG-HIVAGYACQVNFS 525 (587)
Q Consensus 454 d~~~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~-~~~~~~~~---~~~-~~~~~~i~~l~~s 525 (587)
++..+.....- .......-..|.|||++++..+.+ .+++|.+|..... ..+..++. ++. .....+...|.++
T Consensus 173 ~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis 252 (346)
T COG2706 173 DLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHIS 252 (346)
T ss_pred EcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEEC
Confidence 99865443211 113455678999999999877665 5899999988763 22222221 111 1123456678999
Q ss_pred CCCCEEEEEcC-CCcEEEEeCCC--Cee--EEEEecCCCCEEEEEEcCCCCCEEEEEECCC-cEEEc
Q 007855 526 PDGRFVMSGDG-EGKCWFWDWKS--CKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWDG-LIKYW 586 (587)
Q Consensus 526 pdg~~L~sgs~-dG~I~vwd~~t--~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG-~I~iW 586 (587)
+||+||.++.. ...|.+|.+.. +++ +.....+...-..+.+++ ++++|++++.++ .|.+|
T Consensus 253 ~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf 318 (346)
T COG2706 253 PDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP-SGRFLIAANQKSDNITVF 318 (346)
T ss_pred CCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC-CCCEEEEEccCCCcEEEE
Confidence 99999988763 34688887753 332 223334555578899999 777888877653 45554
No 283
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=1.6e-09 Score=110.82 Aligned_cols=138 Identities=14% Similarity=0.188 Sum_probs=101.5
Q ss_pred cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEee-cCCCcceeEEEEeCC--CCE-EEEEECCCe
Q 007855 417 EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN--TNW-LAAQSLDNQ 492 (587)
Q Consensus 417 ~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~i~~i~~sp~--g~~-l~~~s~dg~ 492 (587)
.+..++..|..+|.++.|..+.++++++ ||.|.+||.-.+.++.... .+..+.+..+..-++ ... ++.++...+
T Consensus 775 aCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeST 852 (1034)
T KOG4190|consen 775 ACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAEST 852 (1034)
T ss_pred eeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhh
Confidence 3556788999999999999888877654 7889999986666554332 233334444444443 333 444478899
Q ss_pred EEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007855 493 ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 556 (587)
Q Consensus 493 I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~ 556 (587)
|+++|.+...-....+........+.+.+++..+.|++++++-++|.|.+.|.++|+.+..++.
T Consensus 853 VKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrp 916 (1034)
T KOG4190|consen 853 VKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRP 916 (1034)
T ss_pred heeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCc
Confidence 9999998876555555543333356788899999999999999999999999999998876654
No 284
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=1.2e-06 Score=88.97 Aligned_cols=176 Identities=16% Similarity=0.172 Sum_probs=137.3
Q ss_pred EccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC-eEEEEECCCCcEEEEeecCC
Q 007855 304 FFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK-NIKYWDTETGQVIRTFSTGK 382 (587)
Q Consensus 304 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg-~I~vWd~~t~~~i~~~~~~~ 382 (587)
|++-+|.+++..|. |...|.+. ..+-.++ .+|...|+-..+..++.-++.|..|| .|-|+|.++++.......-.
T Consensus 327 fa~~~Gd~ia~VSR-GkaFi~~~-~~~~~iq--v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg 402 (668)
T COG4946 327 FAVVNGDYIALVSR-GKAFIMRP-WDGYSIQ--VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLG 402 (668)
T ss_pred hccCCCcEEEEEec-CcEEEECC-CCCeeEE--cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCcc
Confidence 55556889988885 77777776 3333332 36788899999998888999999999 89999999998777766666
Q ss_pred cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC----CEEEEECCCC
Q 007855 383 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK----SLRVWEFGIP 458 (587)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg----~I~iwd~~~~ 458 (587)
.+..+...+++ ..++++.....|.++|+.++.....-+...+-|+.+.|+|++++|+-+--+| .|+++|+..+
T Consensus 403 ~I~av~vs~dG---K~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~ 479 (668)
T COG4946 403 NIEAVKVSPDG---KKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGG 479 (668)
T ss_pred ceEEEEEcCCC---cEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCC
Confidence 77788888765 4688888889999999999987666566778899999999999999886665 6999999988
Q ss_pred eEEEEeecCCCcceeEEEEeCCCCEEEEEE
Q 007855 459 VVIKYISEPHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s 488 (587)
+...... ....-.+-+|.|++++|..-+
T Consensus 480 Kiy~vTT--~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 480 KIYDVTT--PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEecC--CcccccCcccCCCCcEEEEEe
Confidence 7765543 222334567889998876654
No 285
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.93 E-value=7.2e-07 Score=103.00 Aligned_cols=247 Identities=17% Similarity=0.233 Sum_probs=155.7
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC--------------CC--------CeeeEEEcc--------------
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF--------------NS--------GKCMRTYMG-------------- 338 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~--------------~~--------~~~~~~~~~-------------- 338 (587)
-..+|.|++|||+ +.+|+..+.+++|.+.... .. |+.-..|.|
T Consensus 119 vd~GI~a~~WSPD-~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 119 VDSGILAASWSPD-EELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred EcCcEEEEEECCC-cCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 3568999999999 8999999989998876430 00 000001110
Q ss_pred ----------cCCceeeEEEecCCCeEEEEeC------CCeEEEEECCCCcEEEEee-cCCcceEEEEccCCCCCcEEEE
Q 007855 339 ----------HSKAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 339 ----------h~~~V~~l~fs~dg~~l~s~s~------Dg~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~s 401 (587)
+...-..|+|-.||.+|++.+. -+.|+||+-+ |....+-. .......++|.|.+ ++|++
T Consensus 198 ~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG---~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSG---NLIAS 273 (928)
T ss_pred CCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCC---CEEEE
Confidence 2234567889999999998775 2589999976 65444333 22334467888765 45665
Q ss_pred EeC---CCcEEEEeCCC---CcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE--EEEeecCCCccee
Q 007855 402 GMS---DKKIVQWDMNT---KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV--IKYISEPHMHSMP 473 (587)
Q Consensus 402 g~~---dg~I~iwD~~t---~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~i~ 473 (587)
... ...|.+|.-+. ++....+......|..|.|++++..|++...|. |.+|-..+-.- ...+..+....+.
T Consensus 274 ~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~ 352 (928)
T PF04762_consen 274 SQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVN 352 (928)
T ss_pred EEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCC
Confidence 543 24566665332 222222234567899999999999999988665 99999877542 2222223444556
Q ss_pred EEEEeCC-CCEEEEEECCCeEEEEEcC----Cce----------------ee--cccc--ee------cccccccceEEE
Q 007855 474 SISLHPN-TNWLAAQSLDNQILIYSTR----ERF----------------QL--NKKK--RF------AGHIVAGYACQV 522 (587)
Q Consensus 474 ~i~~sp~-g~~l~~~s~dg~I~iwd~~----~~~----------------~~--~~~~--~~------~~~~~~~~i~~l 522 (587)
.+.|+|. ...|.+.+.+|.+..++.. .+. .+ ..+. .. ..-.....|.++
T Consensus 353 ~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~v 432 (928)
T PF04762_consen 353 FVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDV 432 (928)
T ss_pred ceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEE
Confidence 6999995 4557777766766655431 110 00 0000 00 001124668899
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 523 NFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
+|++++..+++-..||.|.+|.+..
T Consensus 433 af~~~~~~~avl~~d~~l~~~~~~~ 457 (928)
T PF04762_consen 433 AFSPSNSRFAVLTSDGSLSIYEWDL 457 (928)
T ss_pred EEeCCCCeEEEEECCCCEEEEEecC
Confidence 9999998899999999999998643
No 286
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.89 E-value=8.4e-07 Score=90.89 Aligned_cols=259 Identities=20% Similarity=0.313 Sum_probs=160.6
Q ss_pred CeEEEEEccCCCcEEEEEeCCC---------------eEEEEecCCCCeeeEEEcccC----------------------
Q 007855 298 GVSAIRFFPKYGHLILSAGMDT---------------KVKIWDVFNSGKCMRTYMGHS---------------------- 340 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg---------------~I~iWd~~~~~~~~~~~~~h~---------------------- 340 (587)
.|.-+.|+|. +.+|.+-+..+ .+.+||+ .++..+..+.+-.
T Consensus 73 ~V~~~~fSP~-~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~-~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv 150 (561)
T COG5354 73 DVKYLDFSPN-EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDI-ASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV 150 (561)
T ss_pred CceecccCcc-cceeeeeccCCccChhhccCCccccCceeEEec-cCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence 4888889998 88888876543 4889998 5554444332211
Q ss_pred -----------------------CceeeEEEecCC--CeEEE-----EeCCCeEEEEECCCCcEEEEeecC-CcceEEEE
Q 007855 341 -----------------------KAVRDISFCNDG--TKFLT-----ASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKL 389 (587)
Q Consensus 341 -----------------------~~V~~l~fs~dg--~~l~s-----~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~ 389 (587)
..|+...|+|.+ ..|+. .+..+.++||.+..+..+.+-..- -....+.|
T Consensus 151 ~~sl~i~e~t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW 230 (561)
T COG5354 151 GSSLYIHEITDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKW 230 (561)
T ss_pred cCeEEEEecCCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEE
Confidence 345666666642 23332 345667777777766555443321 12223444
Q ss_pred ccCCCCCcEEEEEe----------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE--CCCCEEEEECCC
Q 007855 390 NPDDDKQNILLAGM----------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS--DDKSLRVWEFGI 457 (587)
Q Consensus 390 ~~~~~~~~~l~sg~----------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s--~Dg~I~iwd~~~ 457 (587)
.+.+. .+++-.. ....++++++....+.-.. .-.++|...+|.|.++.|++.+ .+..+.++|++.
T Consensus 231 ~~~g~--~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~ 307 (561)
T COG5354 231 QVLGK--YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRG 307 (561)
T ss_pred ecCCc--eEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeeccccc
Confidence 44332 2222111 1246778888754433332 5578999999999998877765 678899999987
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEE
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg 534 (587)
. ....+ ....-..+.|+|.++++++++.+ |.|.+|+..+.+.+. ..+.+. ...-+.|+|||+|+.+.
T Consensus 308 N-l~~~~---Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~--~~~~~~----n~s~~~wspd~qF~~~~ 377 (561)
T COG5354 308 N-LRFYF---PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVA--GAFNGL----NTSYCDWSPDGQFYDTD 377 (561)
T ss_pred c-eEEec---CCcccccccccCcccEEEEecCCccccceEEeccCCceEEE--EEeecC----CceEeeccCCceEEEec
Confidence 7 33333 23344678899999999998766 679999988765442 222222 22346899999998876
Q ss_pred cC------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 535 DG------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 535 s~------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
.. |..|.|||+...... ..+.+.|.| .+.+..+.+.+
T Consensus 378 ~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p-~~~~~ttsSs~ 420 (561)
T COG5354 378 TTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDP-SGQYVTTSSSC 420 (561)
T ss_pred CCCcccccCcceEEEEecCchhh--------hhhhccccC-CcccceeeccC
Confidence 53 677999998654332 345566766 34444444443
No 287
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.89 E-value=1.4e-07 Score=100.50 Aligned_cols=244 Identities=18% Similarity=0.165 Sum_probs=172.1
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC------------CCeEEEEeCCC
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND------------GTKFLTASYDK 362 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d------------g~~l~s~s~Dg 362 (587)
|...-.++.|+|. | +||-|+. ..|.+-|. .+-+.++.+..|...|+.+.|.|- .-.|+++...|
T Consensus 14 ~~sN~~A~Dw~~~-G-LiAygsh-slV~VVDs-~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 14 SRSNRNAADWSPS-G-LIAYGSH-SLVSVVDS-RSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred CcccccccccCcc-c-eEEEecC-ceEEEEeh-hhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 3344678899997 4 7777765 56888887 688899999999999999999872 12566677789
Q ss_pred eEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCC-cEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-CCC
Q 007855 363 NIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQ-NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-NNR 439 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~-~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~~~ 439 (587)
.|.+||...+..+..+..+.. ...++|.+..+.. .+|++-.....|.+|+..+|+....+........|+.+.| +.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999999888877765543 4467777665554 6788888889999999999999988887777888899988 556
Q ss_pred EEEEEECCCCEEEEECCC------CeEEEEeecCCCc------------c-------------eeEEEEeCCCCEEEEEE
Q 007855 440 RFVTSSDDKSLRVWEFGI------PVVIKYISEPHMH------------S-------------MPSISLHPNTNWLAAQS 488 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~------------~-------------i~~i~~sp~g~~l~~~s 488 (587)
.|...+..|.|.+.+.-. ......+..+|.. . ...++|+|.-+.++...
T Consensus 170 h~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~ 249 (1062)
T KOG1912|consen 170 HFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT 249 (1062)
T ss_pred eEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE
Confidence 677777778877776521 1111122222211 0 11246677665555566
Q ss_pred CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCCC
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~L~sgs~dG~I~vwd~~t 547 (587)
....+.++|+.-...+....... +.+.-+.+-|+++ .|+++-.||.+.||-.+.
T Consensus 250 ~prellv~dle~~~~l~vvpier-----~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 250 FPRELLVFDLEYECCLAVVPIER-----GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred eccceEEEcchhhceeEEEEecc-----CCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 67889999987655554333322 3333466767654 699999999999997654
No 288
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=1.6e-07 Score=99.18 Aligned_cols=244 Identities=12% Similarity=0.139 Sum_probs=159.6
Q ss_pred eEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 288 LVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 288 ~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
.-+++.||+..|.-+.|+.+ .+-|-|+..+|.|.+|-+++..-+-..+. ....-|.+++|+.+|..++....||.|.|
T Consensus 63 mNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIV 141 (1189)
T KOG2041|consen 63 MNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIV 141 (1189)
T ss_pred hhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEE
Confidence 44689999999999999998 78899999999999999965432222221 24566899999999999999999999998
Q ss_pred EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-------E-E---EEEccCCCCeeEEEEe
Q 007855 367 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------I-T---QEYDQHLGAVNTITFV 435 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-------~-~---~~~~~h~~~I~~i~~s 435 (587)
=.++....-..--.+.....+.|+++. ..++.+-.+|.+.+||....- + + ..+......|..+.|.
T Consensus 142 GsvdGNRIwgKeLkg~~l~hv~ws~D~---~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~ 218 (1189)
T KOG2041|consen 142 GSVDGNRIWGKELKGQLLAHVLWSEDL---EQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWN 218 (1189)
T ss_pred EeeccceecchhcchheccceeecccH---HHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeec
Confidence 877755432221112222345566654 467788888999999976431 1 1 1122233346677775
Q ss_pred --------cCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---------CeEEEEEc
Q 007855 436 --------DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---------NQILIYST 498 (587)
Q Consensus 436 --------p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---------g~I~iwd~ 498 (587)
|+...|+++-..|.+.|..-.+......+. ..-.+..+.|+++|..|++++.+ +.|.+|..
T Consensus 219 ~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp 296 (1189)
T KOG2041|consen 219 TGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP 296 (1189)
T ss_pred cCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEe--cccEeecceecCCCcEEEEccCcccccCccccceEEEecc
Confidence 577899999999999887654433323332 23578899999999999998765 35666654
Q ss_pred CCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 499 RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
-.. .+. .++- ....|+.++|-..|-.++.+- |+.|++=+
T Consensus 297 ~G~-i~g---tlkv--pg~~It~lsWEg~gLriA~Av-dsfiyfan 335 (1189)
T KOG2041|consen 297 YGH-IVG---TLKV--PGSCITGLSWEGTGLRIAIAV-DSFIYFAN 335 (1189)
T ss_pred chh-heE---EEec--CCceeeeeEEcCCceEEEEEe-cceEEEEe
Confidence 321 111 1111 134566677766555444332 33444433
No 289
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.85 E-value=2.1e-08 Score=106.14 Aligned_cols=258 Identities=18% Similarity=0.262 Sum_probs=165.2
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCC-CcEEEEEeCCCeEEEEecCCC--CeeeEEEcccCCceeeEEEecC-CCeEEEE
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKY-GHLILSAGMDTKVKIWDVFNS--GKCMRTYMGHSKAVRDISFCND-GTKFLTA 358 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~-g~~L~sgs~Dg~I~iWd~~~~--~~~~~~~~~h~~~V~~l~fs~d-g~~l~s~ 358 (587)
|-|.+.++.+..- .|-.+.|+|.. ..+-++......-.+|++... ...-..+.+|+.+|+++.|++. ...|+++
T Consensus 56 ~~ppr~l~h~tpw--~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatc 133 (1081)
T KOG0309|consen 56 FTPPRWLHHITPW--QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATC 133 (1081)
T ss_pred CCCceeeeccCcc--hhcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeec
Confidence 3444444433322 35566676641 123333344455678988433 2344556799999999999994 4688999
Q ss_pred eCCCeEEEEECCCCc-EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEe
Q 007855 359 SYDKNIKYWDTETGQ-VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~-~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~s 435 (587)
+.|-.+..||+++.. ++..+. -......++|+.... -+++.+....|.+||++.+ .++..+++|...|+.+.|.
T Consensus 134 svdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p---~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fn 210 (1081)
T KOG0309|consen 134 SVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDP---NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFN 210 (1081)
T ss_pred cccccceeeeccCCCcceeeeecccccCceeeecccCc---chhhhccCCceEEEeccCCCcceEEecccceeeehHHHh
Confidence 999999999998764 333333 233445677776544 2566667788999999976 5677888999999999987
Q ss_pred c-CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCE--EEEEECCCeEEEEEcCCce-------eec
Q 007855 436 D-NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW--LAAQSLDNQILIYSTRERF-------QLN 505 (587)
Q Consensus 436 p-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~--l~~~s~dg~I~iwd~~~~~-------~~~ 505 (587)
. ....+.+++.|++|++||................+|..-++.|-|.- +.-.-.++.+.+++.++.. ...
T Consensus 211 r~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~ 290 (1081)
T KOG0309|consen 211 RFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNT 290 (1081)
T ss_pred hhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCc
Confidence 4 33468899999999999997654443333345667777777775432 2222223344444433221 223
Q ss_pred ccceecccccccceEEEEEcCC----------CCEEEEEcCCCcEEEEeCCC
Q 007855 506 KKKRFAGHIVAGYACQVNFSPD----------GRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spd----------g~~L~sgs~dG~I~vwd~~t 547 (587)
....|.|| ...|....|-.. .-.|++=+.|..+++|-+.+
T Consensus 291 pVh~F~GH--~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 291 PVHTFVGH--DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeeecCc--chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 45667777 334433333221 12588999999999998753
No 290
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.83 E-value=8.4e-08 Score=95.58 Aligned_cols=161 Identities=14% Similarity=0.154 Sum_probs=120.1
Q ss_pred eeeEEEecCCCeEEEEeCCCeEEEEECCCC----cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE
Q 007855 343 VRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418 (587)
Q Consensus 343 V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~----~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~ 418 (587)
+..+..++.+++|+++..+....++++... +++..+.....+..+.+........+....+....+.+|....+..
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~ 144 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRC 144 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCc
Confidence 344556777888888877777666666543 3455555666666777776655433333334445555565554433
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
..+-+|.+-++.++|+||+++|+++..|..|+|-.+.....+..+..+|..-|..+++-++ ..|++++.|++|++||+
T Consensus 145 -~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~ 222 (390)
T KOG3914|consen 145 -EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDI 222 (390)
T ss_pred -chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEec
Confidence 3345899999999999999999999999999999998888888888899999999999865 45899999999999999
Q ss_pred CCceeec
Q 007855 499 RERFQLN 505 (587)
Q Consensus 499 ~~~~~~~ 505 (587)
.++..+.
T Consensus 223 ~sgk~L~ 229 (390)
T KOG3914|consen 223 TSGKLLD 229 (390)
T ss_pred ccCCccc
Confidence 9887663
No 291
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.81 E-value=5e-08 Score=91.86 Aligned_cols=165 Identities=13% Similarity=0.158 Sum_probs=104.0
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC-----CCeE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-----DKNI 364 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-----Dg~I 364 (587)
+++.-|+++-.+-+.+-. +..++++..||.+.+++........+.+..-...-.+.++...++.+.++.. -+..
T Consensus 83 ~~~a~~sep~p~~~~s~~-~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~ 161 (319)
T KOG4714|consen 83 KVLAKNSEIDPNDACTMT-DNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNF 161 (319)
T ss_pred eeeeccCCCCCccccccc-CCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccce
Confidence 344455554444444444 6789999999999999984322322222221222223334445555555432 2345
Q ss_pred EEEECCCCcEEEE-eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEccCCCCeeEEEEec-CCCEE
Q 007855 365 KYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVD-NNRRF 441 (587)
Q Consensus 365 ~vWd~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~~h~~~I~~i~~sp-~~~~l 441 (587)
++|+++-.+.+.. ........+++.+| ..++++++|+.+|.+-+||.+.... +..+..|..+|+.+.|+| ++..|
T Consensus 162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp--~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~L 239 (319)
T KOG4714|consen 162 YANTLDPIKTLIPSKKALDAVTALCSHP--AQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHL 239 (319)
T ss_pred eeecccccccccccccccccchhhhCCc--ccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchhe
Confidence 5566543332211 11222234444444 4568999999999999999998743 445678999999999998 56789
Q ss_pred EEEECCCCEEEEECCC
Q 007855 442 VTSSDDKSLRVWEFGI 457 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~ 457 (587)
++++.||.+-.||..+
T Consensus 240 ft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 240 FTCSEDGSLWHWDAST 255 (319)
T ss_pred eEecCCCcEEEEcCCC
Confidence 9999999999999765
No 292
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.80 E-value=6.7e-06 Score=81.51 Aligned_cols=233 Identities=12% Similarity=0.136 Sum_probs=156.6
Q ss_pred ceeeEEEec-CCCeEEEEeCCC-eEEEEECCCCcEEEEeecCCcce---EEEEccCCCCCcEEEEEe-----CCCcEEEE
Q 007855 342 AVRDISFCN-DGTKFLTASYDK-NIKYWDTETGQVIRTFSTGKIPY---VVKLNPDDDKQNILLAGM-----SDKKIVQW 411 (587)
Q Consensus 342 ~V~~l~fs~-dg~~l~s~s~Dg-~I~vWd~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~sg~-----~dg~I~iw 411 (587)
....++.+| .+..++.+-.-| ...+||..+++.+..+.....-. -..|++++ .+|++.- ..|.|-||
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG---~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDG---RLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCC---CEEEEeccccCCCcEEEEEE
Confidence 345677888 455555665544 57889999999988876543332 35566654 4566653 45899999
Q ss_pred eCC-CCcEEEEEccCCCCeeEEEEecCCCEEEEEE------------------CCCCEEEEECCCCeEEEEeec---CCC
Q 007855 412 DMN-TKEITQEYDQHLGAVNTITFVDNNRRFVTSS------------------DDKSLRVWEFGIPVVIKYISE---PHM 469 (587)
Q Consensus 412 D~~-t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s------------------~Dg~I~iwd~~~~~~~~~~~~---~~~ 469 (587)
|.. +.+.+.++..|.-.-..+.+.|+++.|+++- .+.+|.+.|..++..+..... .+.
T Consensus 83 d~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~ 162 (305)
T PF07433_consen 83 DAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQ 162 (305)
T ss_pred ECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccc
Confidence 999 6688889998888888999999998888763 234566677777777666432 366
Q ss_pred cceeEEEEeCCCCEEEEEECCCe-------EEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc-CCCcEE
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQ-------ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCW 541 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~-------I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~ 541 (587)
.+|..+++.++|..++..-..|. |.+++............-.-....+|+-+|+++++|.++++.+ .-|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 78999999999977666544332 4444433221111111111123357889999999999886555 567899
Q ss_pred EEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 542 FWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 542 vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
+||..+++++....... +..++..+ ++ +++|.|...
T Consensus 243 ~~d~~tg~~~~~~~l~D--~cGva~~~-~~-f~~ssG~G~ 278 (305)
T PF07433_consen 243 VWDAATGRLLGSVPLPD--ACGVAPTD-DG-FLVSSGQGQ 278 (305)
T ss_pred EEECCCCCEeeccccCc--eeeeeecC-Cc-eEEeCCCcc
Confidence 99999999887765443 45666655 33 677766543
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=2.4e-09 Score=114.93 Aligned_cols=225 Identities=20% Similarity=0.260 Sum_probs=164.5
Q ss_pred cCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 283 YIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 283 ~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
|-.++..++|+.|+...+|++|+-. .+.|+.|+..|.|+++++ .+|.....+.+|..+|+.+.-+.+|..+++.+.-.
T Consensus 1088 FSRFr~w~~frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv-~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S 1165 (1516)
T KOG1832|consen 1088 FSRFRSWRSFRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNV-SSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSS 1165 (1516)
T ss_pred HhhcccchhhhccccceeeEEeecC-CceEEeeeccceEEEEEc-cCccccccccccccccccccccCCcceeeeecccc
Confidence 3456778899999999999999998 889999999999999999 78988889999999999999999998877665433
Q ss_pred --eEEEEECCC-CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc----cCCCCeeEEEEe
Q 007855 363 --NIKYWDTET-GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD----QHLGAVNTITFV 435 (587)
Q Consensus 363 --~I~vWd~~t-~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~----~h~~~I~~i~~s 435 (587)
-..+|++.+ +...++|... .++.|+... ..-+.|+......+||+.++..++++- +....-++..|+
T Consensus 1166 ~PlsaLW~~~s~~~~~Hsf~ed---~~vkFsn~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~Fs 1239 (1516)
T KOG1832|consen 1166 SPLSALWDASSTGGPRHSFDED---KAVKFSNSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFS 1239 (1516)
T ss_pred CchHHHhccccccCcccccccc---ceeehhhhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccC
Confidence 477999854 4555555433 345555432 234556666789999999998776632 222334788999
Q ss_pred cCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccc
Q 007855 436 DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 436 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
|+..+++ .|| .+||.+....+..+..-. --..-.|||+|..++.-+ -|||+++...+.....
T Consensus 1240 P~D~LIl---ndG--vLWDvR~~~aIh~FD~ft--~~~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~------ 1301 (1516)
T KOG1832|consen 1240 PCDTLIL---NDG--VLWDVRIPEAIHRFDQFT--DYGGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPS------ 1301 (1516)
T ss_pred CCcceEe---eCc--eeeeeccHHHHhhhhhhe--ecccccccCCCceEEeec-----hhhhhHHHHHHhcCcc------
Confidence 9988765 355 589999987776663311 223446899999988876 6899988655433322
Q ss_pred ccceEEEEEcCCCCEEEEE
Q 007855 516 AGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sg 534 (587)
-.-|.+.|+..|..+...
T Consensus 1302 -Ldqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1302 -LDQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -ccceEEEeccCccchhhh
Confidence 223568898888776543
No 294
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.77 E-value=2e-08 Score=97.88 Aligned_cols=165 Identities=12% Similarity=0.155 Sum_probs=130.1
Q ss_pred EEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC-----eEEEEeecCCCcceeE
Q 007855 400 LAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPS 474 (587)
Q Consensus 400 ~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~i~~ 474 (587)
++.+.+-.|.+-|+.++.. +.|. ..+.|.++.|...++.++.|+..|.|..+|++.. .+...+ -|...|++
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl--yh~Ssvts 303 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL--YHDSSVTS 303 (425)
T ss_pred ecccccceeEEEEeecccc-cccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE--EcCcchhh
Confidence 4555667788888888743 2333 5678999999988999999999999999999864 333333 48888999
Q ss_pred EEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q 007855 475 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 553 (587)
Q Consensus 475 i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~ 553 (587)
+..-. ++++|++.+++|.|.+||++-.++-.....+.||.+...-.-+-+.+...+|++++.|...+||.++++.++.+
T Consensus 304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~t 383 (425)
T KOG2695|consen 304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCT 383 (425)
T ss_pred hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeec
Confidence 88877 78999999999999999998766645567888998765555566778888999999999999999999999998
Q ss_pred EecCC----CCEEEEEEcC
Q 007855 554 LKCHE----GVCIGCEWHP 568 (587)
Q Consensus 554 l~~h~----~~V~~v~~sp 568 (587)
++... ..+.+++|..
T Consensus 384 ipf~~s~~e~d~~sv~~~s 402 (425)
T KOG2695|consen 384 IPFPYSASEVDIPSVAFDS 402 (425)
T ss_pred cCCCCccccccccceehhc
Confidence 87533 3456666654
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.77 E-value=6.8e-06 Score=79.18 Aligned_cols=238 Identities=12% Similarity=0.133 Sum_probs=133.5
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEecCCCC-eeeEEEc---ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 302 IRFFPKYGHLILSAGMDTKVKIWDVFNSG-KCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 302 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-~~~~~~~---~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
++.+++ |++||.- .|..|.|-....+- .++.... .....=+.++||||+..||.+...|+|+++|+.... +..
T Consensus 3 ~~~~~~-Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~ 79 (282)
T PF15492_consen 3 LALSSD-GKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFV 79 (282)
T ss_pred eeecCC-CcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce-eEE
Confidence 455666 7777664 46777776653322 1222222 223345789999999999999999999999997543 333
Q ss_pred eecCC--------cceEEEEccCCCC---CcEEEEEeCCCcEEEEeCCCC-----cEEEEE--c-cCCCCeeEEEEecCC
Q 007855 378 FSTGK--------IPYVVKLNPDDDK---QNILLAGMSDKKIVQWDMNTK-----EITQEY--D-QHLGAVNTITFVDNN 438 (587)
Q Consensus 378 ~~~~~--------~~~~~~~~~~~~~---~~~l~sg~~dg~I~iwD~~t~-----~~~~~~--~-~h~~~I~~i~~sp~~ 438 (587)
+.... .+..+.|...... ...|++-...|.++-|-+..+ +....+ . .+...|+++.++|..
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h 159 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH 159 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence 32211 1112223222211 235777777888877765321 222222 2 246789999999999
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCE-E-EEEECCCe------EEEEEcCCceeeccccee
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW-L-AAQSLDNQ------ILIYSTRERFQLNKKKRF 510 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~-l-~~~s~dg~------I~iwd~~~~~~~~~~~~~ 510 (587)
+.|++|+.... ..+. .......+++-.+-.+..+ . ++...++. ..+|.+-+. ..+
T Consensus 160 ~LLlVgG~~~~------~~~~-----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~------~~f 222 (282)
T PF15492_consen 160 RLLLVGGCEQN------QDGM-----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF------KFF 222 (282)
T ss_pred CEEEEeccCCC------CCcc-----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce------eee
Confidence 99888875432 0000 0011112222222111111 1 11111111 112221111 111
Q ss_pred cc-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007855 511 AG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 559 (587)
Q Consensus 511 ~~-~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~ 559 (587)
.. ......|..+..||||..|++...+|.|.+|++.+.++...+..+..
T Consensus 223 s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~eq 272 (282)
T PF15492_consen 223 SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQDEQ 272 (282)
T ss_pred eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchhhC
Confidence 00 11245677899999999999999999999999999988887765544
No 296
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=3e-07 Score=91.63 Aligned_cols=259 Identities=19% Similarity=0.200 Sum_probs=155.6
Q ss_pred EEEEecCCCCeeeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEE
Q 007855 321 VKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNIL 399 (587)
Q Consensus 321 I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l 399 (587)
|++.+. .+-+....+.+|...|++|+|+|..+ ++..++.+..|+|.|+++..++..+..+..++.++|..+. .+++
T Consensus 175 v~~l~~-~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde--~h~I 251 (463)
T KOG1645|consen 175 VQKLES-HDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDE--RHVI 251 (463)
T ss_pred eEEecc-CCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCC--ccee
Confidence 555554 34455556778899999999999766 7888999999999999999999999999999999998865 5899
Q ss_pred EEEeCCCcEEEEeCCCCc-EEEEEcc--CCCCeeEEEEec------CCCEEEEEECCCCEEEEECCCC--eEEEEeecCC
Q 007855 400 LAGMSDKKIVQWDMNTKE-ITQEYDQ--HLGAVNTITFVD------NNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH 468 (587)
Q Consensus 400 ~sg~~dg~I~iwD~~t~~-~~~~~~~--h~~~I~~i~~sp------~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~ 468 (587)
++|..+|.|.+||++..+ .+..+.+ ...+|..|+..+ .+..++..+.+ +..|.+... .....+....
T Consensus 252 YaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~ 329 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP 329 (463)
T ss_pred EEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC
Confidence 999999999999998653 2222221 233444444432 34444444432 556665321 1111121223
Q ss_pred CcceeEEEEeCCCCEEEEEECC-------CeEEE-EEcCCceeecccceec-ccccccc-e-EEEEEcCCCCEEE-EEcC
Q 007855 469 MHSMPSISLHPNTNWLAAQSLD-------NQILI-YSTRERFQLNKKKRFA-GHIVAGY-A-CQVNFSPDGRFVM-SGDG 536 (587)
Q Consensus 469 ~~~i~~i~~sp~g~~l~~~s~d-------g~I~i-wd~~~~~~~~~~~~~~-~~~~~~~-i-~~l~~spdg~~L~-sgs~ 536 (587)
.+...++..++..+.++..... ..|.. .|-.++..+...+... |...... - ..+.-.++.++|+ .|++
T Consensus 330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~ 409 (463)
T KOG1645|consen 330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDS 409 (463)
T ss_pred CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCC
Confidence 4455566666655555444322 11111 1122333222111111 1100000 0 0122234556654 5666
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC-CCCEEEEEECCCcEEEc
Q 007855 537 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL-EQSKVATCGWDGLIKYW 586 (587)
Q Consensus 537 dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~-~~~~l~s~g~DG~I~iW 586 (587)
...+.+||..+++.+.++... .+|.++..... ++++|++-. |..++||
T Consensus 410 tn~lil~D~~s~evvQ~l~~~-epv~Dicp~~~n~~syLa~LT-d~~v~Iy 458 (463)
T KOG1645|consen 410 TNELILQDPHSFEVVQTLALS-EPVLDICPNDTNGSSYLALLT-DDRVHIY 458 (463)
T ss_pred cceeEEeccchhheeeecccC-cceeecceeecCCcchhhhee-cceEEEE
Confidence 778999999999999998744 77887766543 445666655 4456654
No 297
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=5.1e-06 Score=81.26 Aligned_cols=215 Identities=16% Similarity=0.124 Sum_probs=136.0
Q ss_pred CCeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC
Q 007855 361 DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 361 Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
+|+|..||..+|+.+....... ..........+ ..+++++.++.|..||..+|+.+..+.. ...+...-. ..+
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~-~~~ 76 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDG---GRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV-VDG 76 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEET---TEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE-EET
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeC---CEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee-ecc
Confidence 6899999999999999987633 22221122121 3577778999999999999999888765 333222222 235
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEe-ecCC--CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYI-SEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~-~~~~--~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
..+++++.++.|+.+|..++..+... .... ......+.....+..++++..++.|..+|+.++..+..... .....
T Consensus 77 ~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~~~~~ 155 (238)
T PF13360_consen 77 GRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-GEPRG 155 (238)
T ss_dssp TEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-STT-S
T ss_pred cccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-CCCCC
Confidence 56777778889999999999888774 2211 11122223333488899999999999999998877544333 11110
Q ss_pred cc-------ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 516 AG-------YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 516 ~~-------~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.. ....+.+. ++ .++.++.+|.+..+|+.+++.+.... ...+..+ ... .+..|+.++.+|.|..||
T Consensus 156 ~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~w~~~--~~~~~~~-~~~-~~~~l~~~~~~~~l~~~d 228 (238)
T PF13360_consen 156 SSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKLWSKP--ISGIYSL-PSV-DGGTLYVTSSDGRLYALD 228 (238)
T ss_dssp S--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEEEEEC--SS-ECEC-EEC-CCTEEEEEETTTEEEEEE
T ss_pred CcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEEEEec--CCCccCC-cee-eCCEEEEEeCCCEEEEEE
Confidence 01 11223333 44 77778878864444999999765333 2223332 233 445777777899999886
No 298
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.74 E-value=2.4e-07 Score=87.34 Aligned_cols=197 Identities=11% Similarity=0.136 Sum_probs=121.6
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEec-----------CCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDV-----------FNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~-----------~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
|+.+.|+-+ ..|+++..++.+..... ...-...+.+..|..+-.+-+.+-.++.++++..||.+.+.
T Consensus 39 ~~~~~~v~~--~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSAE--YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechhh--heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 566666544 45666666655544433 11122334444555544444445567789999999999999
Q ss_pred ECCCCcE-EEEeecCCcce-EEEEccCCCCCcEEEEEe-----CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC-C
Q 007855 368 DTETGQV-IRTFSTGKIPY-VVKLNPDDDKQNILLAGM-----SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN-R 439 (587)
Q Consensus 368 d~~t~~~-i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~-----~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~-~ 439 (587)
+.+.-.. ...+...+... ..+... .++++.++. .-+..+.|+++..+....-......|++++-+|.. .
T Consensus 117 s~~~~~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~ 193 (319)
T KOG4714|consen 117 STDKDLALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQH 193 (319)
T ss_pred echHHHhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCccccc
Confidence 9875211 11111111110 111111 112333332 22455666665443332222234459999999854 4
Q ss_pred EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCC
Q 007855 440 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~ 500 (587)
.+++|+.||.+-+||.+.......+...|...|..+-||| ++..|++++.||.+..||..+
T Consensus 194 ~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 194 LVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred EEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 5777889999999999988666666678999999999999 568899999999999999875
No 299
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.73 E-value=2.5e-06 Score=90.51 Aligned_cols=258 Identities=10% Similarity=0.082 Sum_probs=158.1
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC----------cee-eEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK----------AVR-DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~----------~V~-~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
+..++.++.+|.|.-+|. .+++.+........ .+. .+.. .+..++.++.++.|..+|.++|+.+.+
T Consensus 69 ~~~vy~~~~~g~l~ald~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 145 (394)
T PRK11138 69 YNKVYAADRAGLVKALDA-DTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ 145 (394)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc
Confidence 457777778889999998 67777766543210 000 1111 355777888899999999999999988
Q ss_pred eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe-----eEEEEecCCCEEEEEECCCCEEE
Q 007855 378 FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I-----~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
..........-... ...++++..++.|..+|..+|+.+..+......+ .+-... +..++.++.++.+..
T Consensus 146 ~~~~~~~~ssP~v~----~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~~v~~~~~~g~v~a 219 (394)
T PRK11138 146 TKVAGEALSRPVVS----DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FGGAIVGGDNGRVSA 219 (394)
T ss_pred ccCCCceecCCEEE----CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CCEEEEEcCCCEEEE
Confidence 87654322111111 1357778889999999999999887775431111 111111 335777788899999
Q ss_pred EECCCCeEEEEeecCCC---c---ceeEEEEeC--CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEE
Q 007855 453 WEFGIPVVIKYISEPHM---H---SMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 453 wd~~~~~~~~~~~~~~~---~---~i~~i~~sp--~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
+|..++..+........ . ....+..+| .+..+++++.+|.+..+|..++..+-... +. . ...+.
T Consensus 220 ~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-~~-~-----~~~~~- 291 (394)
T PRK11138 220 VLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-YG-S-----VNDFA- 291 (394)
T ss_pred EEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-CC-C-----ccCcE-
Confidence 99888776544321110 0 011111122 25567778889999999998876543221 11 1 00111
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC-CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 525 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..+..|+.++.+|.|..+|..+|+.+.....-. ....+.... +.+|+.++.||.|.+.|
T Consensus 292 -~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~g~l~v~~~~G~l~~ld 351 (394)
T PRK11138 292 -VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY---NGYLVVGDSEGYLHWIN 351 (394)
T ss_pred -EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE---CCEEEEEeCCCEEEEEE
Confidence 246678888899999999999998765543211 112222222 23677788888877654
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5e-07 Score=97.24 Aligned_cols=186 Identities=15% Similarity=0.202 Sum_probs=141.1
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
...++|++++ +++|+-|+.+|.|++.+. .+.. .+...|+.. ..+|.+++|||.||.|.|-.+-+.+..
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~--~~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTC--QGNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEec--CCcc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccc
Confidence 4568888887 679999999999999997 4444 455556554 558999999999999999999999999
Q ss_pred EEeecCCcceEEEEccC--CCCCcEEEEEeCCCcEEEEeCCC--CcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEE
Q 007855 376 RTFSTGKIPYVVKLNPD--DDKQNILLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 451 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~--~~~~~~l~sg~~dg~I~iwD~~t--~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~ 451 (587)
..+..+..+.++++.|+ ......+++|+.-| +.++.-+- .+....+....++|.++.|. |++++-++++| |+
T Consensus 107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~ 182 (846)
T KOG2066|consen 107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VK 182 (846)
T ss_pred eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cE
Confidence 99999999999999998 34456799999888 77765331 11112455677999999996 77888887776 89
Q ss_pred EEECCCCeEEEEeecCCCcc-----eeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 452 VWEFGIPVVIKYISEPHMHS-----MPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 452 iwd~~~~~~~~~~~~~~~~~-----i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
|||....+.+..+..++... ...+.|.++.+ |+. +...+|+|..++
T Consensus 183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVI-GWGDSVKICSIK 233 (846)
T ss_pred EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEE-ecCCeEEEEEEe
Confidence 99999998888876655322 34567776554 333 345568888876
No 301
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.69 E-value=3.2e-05 Score=78.79 Aligned_cols=246 Identities=12% Similarity=0.120 Sum_probs=160.6
Q ss_pred EEEeCCCeEEEEecCCCCeeeEEEcccCCc--eeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEe-e--cC---Ccc
Q 007855 313 LSAGMDTKVKIWDVFNSGKCMRTYMGHSKA--VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF-S--TG---KIP 384 (587)
Q Consensus 313 ~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~--V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~-~--~~---~~~ 384 (587)
+....+|.=.||.+.-.++-++. |+.- -.+=..+.||+.++-. ..|.|.++|.++......- . .. ..+
T Consensus 240 FlsD~eG~GnlYSvdldGkDlrr---HTnFtdYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~ 315 (668)
T COG4946 240 FLSDHEGVGNLYSVDLDGKDLRR---HTNFTDYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQP 315 (668)
T ss_pred EEecccCccceEEeccCCchhhh---cCCchhccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccc
Confidence 33445666566655445554433 3221 1222335588877754 4588999998876543211 1 11 111
Q ss_pred e-------EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC-CEEEEECC
Q 007855 385 Y-------VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK-SLRVWEFG 456 (587)
Q Consensus 385 ~-------~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg-~I~iwd~~ 456 (587)
. .-.+++. .+.+++..+ .|+..+.+...+-.++. +|.+.|.-..+.-+++-++.|..|| .|-|+|.+
T Consensus 316 k~~~pskyledfa~~--~Gd~ia~VS-RGkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~ 390 (668)
T COG4946 316 KFVNPSKYLEDFAVV--NGDYIALVS-RGKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKD 390 (668)
T ss_pred cccCHHHhhhhhccC--CCcEEEEEe-cCcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecC
Confidence 1 1112222 234555544 47777777766655543 5677788888888888999999999 89999999
Q ss_pred CCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC
Q 007855 457 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 457 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
++...+.. ...+.|.++..+++|++++++.....|.++|+.++..... .....+.|+.++|||+++++|-+--
T Consensus 391 ~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~i-----dkS~~~lItdf~~~~nsr~iAYafP 463 (668)
T COG4946 391 GGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLI-----DKSEYGLITDFDWHPNSRWIAYAFP 463 (668)
T ss_pred CceEEEee--CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEe-----cccccceeEEEEEcCCceeEEEecC
Confidence 88765444 4677899999999999999999999999999988753321 2222567889999999999998766
Q ss_pred CC----cEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 537 EG----KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 537 dG----~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
+| .|+++|+.+++.+..-. ....=.+-+|.| ++++|.-
T Consensus 464 ~gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~-d~ryLYf 505 (668)
T COG4946 464 EGYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDP-DGRYLYF 505 (668)
T ss_pred cceeeeeEEEEecCCCeEEEecC-CcccccCcccCC-CCcEEEE
Confidence 65 59999999988765432 222223446666 5555543
No 302
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.69 E-value=2.8e-07 Score=100.03 Aligned_cols=185 Identities=17% Similarity=0.210 Sum_probs=140.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCee
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 430 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~ 430 (587)
++..++.|+....+..+|+.+.+..+........ +..+.. ++.++.+|...|+|.+-|.++.+.+.++..|.+.|.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS 221 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS 221 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccccee
Confidence 4567888888888999999999888877665533 222222 236899999999999999999999999999999998
Q ss_pred EEEEecCCCEEEEEEC---------CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCC
Q 007855 431 TITFVDNNRRFVTSSD---------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~ 500 (587)
.+... |+.|++|+. |..|+|||++..+.+.-+.. .....-+.|+|. ...+++++..|+..+-|..+
T Consensus 222 DfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~--~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 222 DFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF--PYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred eeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCccc--ccCchhhhhcccccceEEEEecccceeeccccc
Confidence 88775 889999875 55689999998776655532 222255677875 45688888999999988432
Q ss_pred ceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
-... ....+.-+.....+..+++|++|+.|+.|..+|.|.+|.
T Consensus 298 lsNP-~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNP-PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCC-ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 1111 122233344456688999999999999999999999997
No 303
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.68 E-value=4.6e-06 Score=93.70 Aligned_cols=271 Identities=11% Similarity=0.136 Sum_probs=160.1
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
..|.++.|.-+ ..-++.+...|.|.+-|. ....+.....-...|.+++|+||+..++..+..+++.+-. .+..++.
T Consensus 69 ~~i~s~~fl~d-~~~i~v~~~~G~iilvd~--et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT-~~f~~i~ 144 (1265)
T KOG1920|consen 69 DEIVSVQFLAD-TNSICVITALGDIILVDP--ETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT-KDFEPIA 144 (1265)
T ss_pred cceEEEEEecc-cceEEEEecCCcEEEEcc--cccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe-ccccchh
Confidence 57999999998 777888888999999887 2233333334567899999999999999998877776643 2222222
Q ss_pred EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc----------EEEEEccCCCCeeEEEEecCCCEEEEE--
Q 007855 377 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE----------ITQEYDQHLGAVNTITFVDNNRRFVTS-- 444 (587)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~----------~~~~~~~h~~~I~~i~~sp~~~~l~s~-- 444 (587)
..... .+.....-++.++....=..+.-..|+ .......-.+.=++|+|--+|.+|++.
T Consensus 145 E~~L~---------~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~ 215 (1265)
T KOG1920|consen 145 EKPLD---------ADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFV 215 (1265)
T ss_pred ccccc---------cccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEE
Confidence 21110 000011113333332222222211111 000000112233568999999999884
Q ss_pred ---ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE---CCCeEEEEEcCCceeecccceecccccccc
Q 007855 445 ---SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 445 ---s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
...+.|+|||-. ..+.....+...--.+++|-|.|.++++-. .++.|.+|.-+.-..-. ..++-......
T Consensus 216 ~~~~~~RkirV~drE--g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~--f~l~~p~de~~ 291 (1265)
T KOG1920|consen 216 ESETGTRKIRVYDRE--GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGE--FVLPFPLDEKE 291 (1265)
T ss_pred eccCCceeEEEeccc--chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccc--cccCCcccccc
Confidence 233789999976 333344445556678899999999988763 45679998754321111 11111222333
Q ss_pred eEEEEEcCCCCEEEE---EcCCCcEEEEeCCCCeeE--EEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 519 ACQVNFSPDGRFVMS---GDGEGKCWFWDWKSCKVF--RTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 519 i~~l~~spdg~~L~s---gs~dG~I~vwd~~t~~~~--~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+..++|+.++..|++ ......|.+|-+.+..-+ +.++...... +.|+|-....|..-..+|.+.++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~ 362 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVR 362 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEE
Confidence 778999999999987 444555999998775432 2333333222 78888555455555566665543
No 304
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.65 E-value=5.9e-06 Score=78.43 Aligned_cols=234 Identities=8% Similarity=-0.034 Sum_probs=147.1
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYV 386 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~ 386 (587)
..+|+.|+..|...+|........+.....|...|+-+.=.. ....+..++.|.++++.+++.+......... -....
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 458999999999999998434444444444544333222111 2235677888999999888765433333222 12334
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCC-c-EEE-EEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEE-
Q 007855 387 VKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E-ITQ-EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK- 462 (587)
Q Consensus 387 ~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~-~~~-~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~- 462 (587)
+.+++++ .++++.+....|..|.+... + .+. ........-.+..|+.....|++++.||++.|||++......
T Consensus 164 ~~~snd~---~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~ 240 (344)
T KOG4532|consen 164 LHYSNDP---SWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA 240 (344)
T ss_pred eEEcCCC---ceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence 5555544 57888888889999988653 2 222 223344556788999999999999999999999998653322
Q ss_pred ---EeecCCCcceeEEEEeCCCC--EEEEEECCCeEEEEEcCCceeecccceeccc---ccccceEEEEEcCCCCEEEEE
Q 007855 463 ---YISEPHMHSMPSISLHPNTN--WLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 463 ---~~~~~~~~~i~~i~~sp~g~--~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdg~~L~sg 534 (587)
.....|.+.+..+.|++.|. +|+..-.-+.+.+.|+++......+..+... .....+...+|+.++.-+.+.
T Consensus 241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~ 320 (344)
T KOG4532|consen 241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVK 320 (344)
T ss_pred hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccc
Confidence 22235788999999998663 4555556688999999887654433322211 112225556677776666555
Q ss_pred cCCCcEEEEeCC
Q 007855 535 DGEGKCWFWDWK 546 (587)
Q Consensus 535 s~dG~I~vwd~~ 546 (587)
+.+ .+.=|++.
T Consensus 321 ~e~-~~ae~ni~ 331 (344)
T KOG4532|consen 321 NEL-QGAEYNIL 331 (344)
T ss_pred cch-hhheeecc
Confidence 544 33444443
No 305
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.60 E-value=3.1e-05 Score=82.37 Aligned_cols=200 Identities=10% Similarity=0.095 Sum_probs=120.4
Q ss_pred CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEE-EeC--CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC
Q 007855 362 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLA-GMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~s-g~~--dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
..|.+-|.+... .+.+........-.|+|++. .+++. ... ...|+++|+.+++...... ..+......|+|+|
T Consensus 169 ~~l~~~d~dg~~-~~~~~~~~~~~~p~wSpDG~--~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG 244 (419)
T PRK04043 169 SNIVLADYTLTY-QKVIVKGGLNIFPKWANKEQ--TAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDG 244 (419)
T ss_pred ceEEEECCCCCc-eeEEccCCCeEeEEECCCCC--cEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCC
Confidence 356665665443 33333333445667777653 33443 332 3579999999887655443 55666778899999
Q ss_pred CEEEEEE-CC--CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-C--eEEEEEcCCceeecccceecc
Q 007855 439 RRFVTSS-DD--KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILIYSTRERFQLNKKKRFAG 512 (587)
Q Consensus 439 ~~l~s~s-~D--g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-g--~I~iwd~~~~~~~~~~~~~~~ 512 (587)
+.++... .+ ..|.++++..+.... +.. .........|+|+|+.|+..+.. + .|.++++.++...... +.+
T Consensus 245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~-LT~-~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt--~~g 320 (419)
T PRK04043 245 SKLLLTMAPKGQPDIYLYDTNTKTLTQ-ITN-YPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV--FHG 320 (419)
T ss_pred CEEEEEEccCCCcEEEEEECCCCcEEE-ccc-CCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--cCC
Confidence 8776543 33 468888887776433 322 22223456899999988777643 2 6778888765432211 112
Q ss_pred cccccceEEEEEcCCCCEEEEEcCC---------CcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 513 HIVAGYACQVNFSPDGRFVMSGDGE---------GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~~L~sgs~d---------G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
. . ...|||+|++|+..... ..|++.|+.++.. ..+... .......|+| +++.|+...
T Consensus 321 ~----~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SP-DG~~I~f~~ 386 (419)
T PRK04043 321 K----N--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSS-DGGSIMFIK 386 (419)
T ss_pred C----c--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECC-CCCEEEEEE
Confidence 1 1 14899999998766543 3688889888764 334332 2234578999 455444433
No 306
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.59 E-value=0.00015 Score=71.57 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=137.2
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEe-cCCCeEEEEeCCCeEEEEECCCCcEEEEee
Q 007855 301 AIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFC-NDGTKFLTASYDKNIKYWDTETGQVIRTFS 379 (587)
Q Consensus 301 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs-~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~ 379 (587)
+++|.+..+.++++--..+.|..|+. ..+... .+.... ...+++. +++ .|+.+... .+.++|+.+++....+.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~-~~~~~~-~~~~~~--~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDP-DTGEVE-VIDLPG--PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEET-TTTEEE-EEESSS--EEEEEEECTTS-EEEEEETT-CEEEEETTTTEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEEC-CCCeEE-EEecCC--CceEEEEccCC-EEEEEEcC-ceEEEecCCCcEEEEee
Confidence 57899855888888888999999998 444433 222222 6777887 564 55555554 45666999986554443
Q ss_pred c--C----CcceEEEEccCCCCCcEEEEEeCC--------CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE-EE
Q 007855 380 T--G----KIPYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV-TS 444 (587)
Q Consensus 380 ~--~----~~~~~~~~~~~~~~~~~l~sg~~d--------g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~-s~ 444 (587)
. . ..+..+.+.++ +++.++.... |.|..++.. ++..... ......+.|+|+|+++.|+ +-
T Consensus 78 ~~~~~~~~~~~ND~~vd~~---G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv~d 152 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPD---GNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYVAD 152 (246)
T ss_dssp EETTCSCTEEEEEEEE-TT---S-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEEEE
T ss_pred ccCCCcccCCCceEEEcCC---CCEEEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheeecc
Confidence 3 1 22334555554 3455554433 568888887 5544333 3456789999999998776 45
Q ss_pred ECCCCEEEEECCCCeE----EEEeec-CCC-cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 445 SDDKSLRVWEFGIPVV----IKYISE-PHM-HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~----~~~~~~-~~~-~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
+..+.|..+++..... ...+.. ... .....+++..+|++.++....+.|.+++.. +..+..+.. . ...
T Consensus 153 s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~-p----~~~ 226 (246)
T PF08450_consen 153 SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL-P----VPR 226 (246)
T ss_dssp TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE--S----SSS
T ss_pred cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC-C----CCC
Confidence 6677888888853211 122211 122 247789999999998888889999999987 444432222 1 135
Q ss_pred eEEEEE-cCCCCEEEEEc
Q 007855 519 ACQVNF-SPDGRFVMSGD 535 (587)
Q Consensus 519 i~~l~~-spdg~~L~sgs 535 (587)
+++++| -++.+.|+..+
T Consensus 227 ~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 227 PTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEEEEEESTTSSEEEEEE
T ss_pred EEEEEEECCCCCEEEEEe
Confidence 677899 46766665543
No 307
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.57 E-value=2e-07 Score=63.39 Aligned_cols=38 Identities=29% Similarity=0.769 Sum_probs=36.4
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEe
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 325 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 325 (587)
++++++.+|.+.|++|+|+|+ +.+|++|+.|++|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~-~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPD-GNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETT-SSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecc-cccceeeCCCCEEEEEC
Confidence 578999999999999999999 99999999999999997
No 308
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.54 E-value=1e-06 Score=88.03 Aligned_cols=153 Identities=14% Similarity=0.187 Sum_probs=105.6
Q ss_pred CeeEEEEecCCCEEEEEECCCCEEEEECCCCeE----EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee
Q 007855 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV----IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~----~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~ 503 (587)
.+..+..++.+++|+++..+....++++..... +... .....-+++.+......+.++..-|.++-+|+-.-..
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 344556678888999998888877877755432 1111 1122234455555555555555555555444432111
Q ss_pred ecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 504 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
......-|| -..+..++|+||+++|++++.|..|++-.......+..+- ||..-|..++.-+ +..|+++|.|++
T Consensus 142 -~~~~~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~t 216 (390)
T KOG3914|consen 142 -GRCEPILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKT 216 (390)
T ss_pred -cCcchhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCc
Confidence 223445566 3668899999999999999999999999887776666664 6999999999986 346999999999
Q ss_pred EEEcC
Q 007855 583 IKYWD 587 (587)
Q Consensus 583 I~iWD 587 (587)
|++||
T Consensus 217 lr~Wd 221 (390)
T KOG3914|consen 217 LRLWD 221 (390)
T ss_pred EEEEe
Confidence 99997
No 309
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.53 E-value=1.5e-05 Score=82.61 Aligned_cols=247 Identities=15% Similarity=0.197 Sum_probs=141.0
Q ss_pred CeEEEEEccCCCcEEEEEeC-----------CCeEEEEecCCCCeeeEEEccc--CCce-eeEEEecCCCeEEEEeCCCe
Q 007855 298 GVSAIRFFPKYGHLILSAGM-----------DTKVKIWDVFNSGKCMRTYMGH--SKAV-RDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~-----------Dg~I~iWd~~~~~~~~~~~~~h--~~~V-~~l~fs~dg~~l~s~s~Dg~ 363 (587)
.|.-+.|||. .+||+|-+. -..++|||+ .+|...+.|... ...+ .-+.||.|++++|.-.. .+
T Consensus 251 ~Vq~idfSP~-EkYLVT~s~~p~~~~~~d~e~~~l~IWDI-~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~s 327 (698)
T KOG2314|consen 251 GVQFIDFSPN-EKYLVTYSPEPIIVEEDDNEGQQLIIWDI-ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NS 327 (698)
T ss_pred CceeeecCCc-cceEEEecCCccccCcccCCCceEEEEEc-cccchhcceeccCCCccccceEEeccCCceeEEecc-ce
Confidence 5889999999 999998653 257999999 789888887652 2222 23578999999987665 56
Q ss_pred EEEEECCCCcEEEE----------eecCCcce------------------------------------EEEEccCCCCCc
Q 007855 364 IKYWDTETGQVIRT----------FSTGKIPY------------------------------------VVKLNPDDDKQN 397 (587)
Q Consensus 364 I~vWd~~t~~~i~~----------~~~~~~~~------------------------------------~~~~~~~~~~~~ 397 (587)
|.||+..+..++-. |.-..... -+.+++.. ++.
T Consensus 328 isIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk-~gd 406 (698)
T KOG2314|consen 328 ISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQK-SGD 406 (698)
T ss_pred EEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEecc-CCc
Confidence 88887664322211 00000000 01111111 111
Q ss_pred EEEEE----------eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC---CCEEEEECCC-CeEEEE
Q 007855 398 ILLAG----------MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD---KSLRVWEFGI-PVVIKY 463 (587)
Q Consensus 398 ~l~sg----------~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D---g~I~iwd~~~-~~~~~~ 463 (587)
+|++- +.-..+-|+.++...+....-.-...|...+|-|.|+.|++-+.. .++.+|-+.+ ......
T Consensus 407 yLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~l 486 (698)
T KOG2314|consen 407 YLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSL 486 (698)
T ss_pred EEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhh
Confidence 12111 000112233333222111111234567888999999988776543 4688888763 222222
Q ss_pred eecCCCcceeEEEEeCCCCEEEEE---ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcE
Q 007855 464 ISEPHMHSMPSISLHPNTNWLAAQ---SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC 540 (587)
Q Consensus 464 ~~~~~~~~i~~i~~sp~g~~l~~~---s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I 540 (587)
+..-.....+.+.|+|.|++++++ |..|.+.++|+.-.... ......| ...+.+.|.|.|+|++++++-++.
T Consensus 487 Vk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k--~~~~~eh---~~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 487 VKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLK--DTASPEH---FAATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred hhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhh--hccCccc---cccccceECCCCCEEEEeeehhhh
Confidence 222233566889999999998876 45788999998631111 1111222 334568999999999999865432
Q ss_pred EEEeCCCCeeEEEEec
Q 007855 541 WFWDWKSCKVFRTLKC 556 (587)
Q Consensus 541 ~vwd~~t~~~~~~l~~ 556 (587)
. +.+|-.+.+++|
T Consensus 562 k---~d~GYri~tfqG 574 (698)
T KOG2314|consen 562 K---VDNGYRIFTFQG 574 (698)
T ss_pred c---cccceEEEEeec
Confidence 2 234444444443
No 310
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.49 E-value=0.0003 Score=69.90 Aligned_cols=231 Identities=16% Similarity=0.213 Sum_probs=150.1
Q ss_pred EEEEEccCCCcEEEEEeCCCe-EEEEecCCCCeeeEEEcccCCce--eeEEEecCCCeEEEEeC-----CCeEEEEECC-
Q 007855 300 SAIRFFPKYGHLILSAGMDTK-VKIWDVFNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASY-----DKNIKYWDTE- 370 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~-I~iWd~~~~~~~~~~~~~h~~~V--~~l~fs~dg~~l~s~s~-----Dg~I~vWd~~- 370 (587)
..++.+|..+..++.+-.-|+ ..+||. .++.....+....+.- =.-+||+||++|++.-. .|.|-|||..
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~-~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDC-RTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEc-CCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 456777865777777776665 567888 6777666554322221 13579999999998744 4899999999
Q ss_pred CCcEEEEeecCC-cceEEEEccCCCCCcEEEEE-----------------eCCCcEEEEeCCCCcEEEE--E--ccCCCC
Q 007855 371 TGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAG-----------------MSDKKIVQWDMNTKEITQE--Y--DQHLGA 428 (587)
Q Consensus 371 t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg-----------------~~dg~I~iwD~~t~~~~~~--~--~~h~~~ 428 (587)
+.+.+..|..+. .+.-+.+.+++. .++++- ..+-.|.+.|..+|+++.. + ..|.-+
T Consensus 87 ~~~ri~E~~s~GIGPHel~l~pDG~--tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lS 164 (305)
T PF07433_consen 87 GYRRIGEFPSHGIGPHELLLMPDGE--TLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLS 164 (305)
T ss_pred CcEEEeEecCCCcChhhEEEcCCCC--EEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccc
Confidence 667778887543 355677777653 233332 2345677788889988776 4 347889
Q ss_pred eeEEEEecCCCEEEEEECCCC-------EEEEECCCCeEEEEeec------CCCcceeEEEEeCCCCEEEEEE-CCCeEE
Q 007855 429 VNTITFVDNNRRFVTSSDDKS-------LRVWEFGIPVVIKYISE------PHMHSMPSISLHPNTNWLAAQS-LDNQIL 494 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~-------I~iwd~~~~~~~~~~~~------~~~~~i~~i~~sp~g~~l~~~s-~dg~I~ 494 (587)
|..+++.++|..++..-..|. |.+++.... +..+.. ...+.+-+|++++++.++++.| ..+.+.
T Consensus 165 iRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 165 IRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred eeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 999999999876665544332 444444332 222211 2346788999999998876655 568899
Q ss_pred EEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 495 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 495 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
+||..++..+.... -.-+|.++-.+++ ++++. ..|.+....
T Consensus 243 ~~d~~tg~~~~~~~-------l~D~cGva~~~~~-f~~ss-G~G~~~~~~ 283 (305)
T PF07433_consen 243 VWDAATGRLLGSVP-------LPDACGVAPTDDG-FLVSS-GQGQLIRLS 283 (305)
T ss_pred EEECCCCCEeeccc-------cCceeeeeecCCc-eEEeC-CCccEEEcc
Confidence 99998876553322 2345667777777 55444 455544333
No 311
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.49 E-value=4.4e-07 Score=61.67 Aligned_cols=39 Identities=41% Similarity=0.867 Sum_probs=36.9
Q ss_pred CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 330 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 330 ~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
++++.++.+|...|++|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 367889999999999999999999999999999999997
No 312
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.47 E-value=6.8e-07 Score=87.46 Aligned_cols=150 Identities=15% Similarity=0.249 Sum_probs=116.7
Q ss_pred EEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC-----cEEEEeecCCcceEE
Q 007855 313 LSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-----QVIRTFSTGKIPYVV 387 (587)
Q Consensus 313 ~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~-----~~i~~~~~~~~~~~~ 387 (587)
++.+.+-.|-|-++ .++ ..+.|. ....|.++.|...+++++.|+..|.|..+|++.. .+...+.++....++
T Consensus 228 fs~G~sqqv~L~nv-etg-~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtsl 304 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNV-ETG-HQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSL 304 (425)
T ss_pred ecccccceeEEEEe-ecc-cccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhh
Confidence 56666778888888 333 223333 5677999999998999999999999999999864 566777777777776
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcE---EEEEccCCCCeeEE--EEecCCCEEEEEECCCCEEEEECCCCeEEE
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEYDQHLGAVNTI--TFVDNNRRFVTSSDDKSLRVWEFGIPVVIK 462 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~---~~~~~~h~~~I~~i--~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 462 (587)
...... +..|++.+.+|+|.+||++.-+. ++.+.+|...-.-+ ...+....++++++|...+||.++.+..+.
T Consensus 305 q~Lq~s--~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~ 382 (425)
T KOG2695|consen 305 QILQFS--QQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLC 382 (425)
T ss_pred hhhccc--cceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceee
Confidence 665533 35789999999999999997766 88899886554443 344677789999999999999999999888
Q ss_pred EeecC
Q 007855 463 YISEP 467 (587)
Q Consensus 463 ~~~~~ 467 (587)
.+..+
T Consensus 383 tipf~ 387 (425)
T KOG2695|consen 383 TIPFP 387 (425)
T ss_pred ccCCC
Confidence 87543
No 313
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.46 E-value=2.5e-06 Score=92.95 Aligned_cols=152 Identities=15% Similarity=0.254 Sum_probs=125.7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC---------CCeEEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY---------DKNIKY 366 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~---------Dg~I~v 366 (587)
..+|+-|+.+ +++|.+|...|+|.|-|. ++.+.++++..|++.|.++.. .|+.|++|+. |..|+|
T Consensus 177 a~~v~imR~N---nr~lf~G~t~G~V~LrD~-~s~~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 177 ASGVTIMRYN---NRNLFCGDTRGTVFLRDP-NSFETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred CCceEEEEec---CcEEEeecccceEEeecC-CcCceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhh
Confidence 3457777654 679999999999999999 899999999999999988776 6889999986 567899
Q ss_pred EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---CC-cEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 367 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK-EITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---t~-~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
||++..+.+..+..+..+..+.|.|.-. ..+++.+..|...+.|.. +. .-+..+......+..+++++++..++
T Consensus 251 YDLRmmral~PI~~~~~P~flrf~Psl~--t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~ala 328 (1118)
T KOG1275|consen 251 YDLRMMRALSPIQFPYGPQFLRFHPSLT--TRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALA 328 (1118)
T ss_pred hhhhhhhccCCcccccCchhhhhccccc--ceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEE
Confidence 9999999888888888888899998655 568888999999999943 22 22333444455699999999999999
Q ss_pred EEECCCCEEEEEC
Q 007855 443 TSSDDKSLRVWEF 455 (587)
Q Consensus 443 s~s~Dg~I~iwd~ 455 (587)
.|..+|.|.+|.-
T Consensus 329 fgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 329 FGDHEGHVNLWAD 341 (1118)
T ss_pred EecccCcEeeecC
Confidence 9999999999983
No 314
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.45 E-value=0.00013 Score=79.41 Aligned_cols=263 Identities=14% Similarity=0.156 Sum_probs=158.4
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC------cee--eEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK------AVR--DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~------~V~--~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 380 (587)
+..++.++.++.|.-.|. .+++.+..+..... .+. .+... ++..++.++.++.|..+|.++|+.+..+..
T Consensus 61 ~g~vy~~~~~g~l~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 61 DGDMYFTTSHSALFALDA-ATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CCEEEEeCCCCcEEEEEC-CCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeeeecC
Confidence 346667777899999998 77877776653322 110 11111 226788888999999999999999988876
Q ss_pred CCcc---eEEEEccCCCCCcEEEEEe---------CCCcEEEEeCCCCcEEEEEccCCC--------------------C
Q 007855 381 GKIP---YVVKLNPDDDKQNILLAGM---------SDKKIVQWDMNTKEITQEYDQHLG--------------------A 428 (587)
Q Consensus 381 ~~~~---~~~~~~~~~~~~~~l~sg~---------~dg~I~iwD~~t~~~~~~~~~h~~--------------------~ 428 (587)
.... ..+...|.-.. .++++++ .++.|..+|..+++.+..+..... .
T Consensus 139 ~~~~~~~~~i~ssP~v~~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 217 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVK-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGT 217 (488)
T ss_pred CCCcCcceEecCCCEEEC-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCC
Confidence 5431 11111111111 2455554 367899999999998877654211 0
Q ss_pred e-eEEEEecCCCEEEEEECCC------------------CEEEEECCCCeEEEEeecCCCc-----ceeEEEEe----CC
Q 007855 429 V-NTITFVDNNRRFVTSSDDK------------------SLRVWEFGIPVVIKYISEPHMH-----SMPSISLH----PN 480 (587)
Q Consensus 429 I-~~i~~sp~~~~l~s~s~Dg------------------~I~iwd~~~~~~~~~~~~~~~~-----~i~~i~~s----p~ 480 (587)
| .+..+.+.+..++.++.++ .|.-+|..+++..-........ ......+. -+
T Consensus 218 vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~ 297 (488)
T cd00216 218 SWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKD 297 (488)
T ss_pred ccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccC
Confidence 1 1234445566777777665 6999999998887665432110 00111111 13
Q ss_pred CC---EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEE------------------cCCCc
Q 007855 481 TN---WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG------------------DGEGK 539 (587)
Q Consensus 481 g~---~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg------------------s~dG~ 539 (587)
+. .+++++.+|.+..+|..++..+-....... .++.+| ..++.+ ..+|.
T Consensus 298 g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~--------~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~ 367 (488)
T cd00216 298 GKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVEQ--------PMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG 367 (488)
T ss_pred CCeeEEEEEECCCceEEEEECCCCcEeeEeEeecc--------ccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence 33 678888899999999999876644322100 123334 223222 24678
Q ss_pred EEEEeCCCCeeEEEEecCC--------CCE--EEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 540 CWFWDWKSCKVFRTLKCHE--------GVC--IGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 540 I~vwd~~t~~~~~~l~~h~--------~~V--~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.-.|+.+|+.+....... .+. ..+.. .+.+|+.++.||.|..+|
T Consensus 368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~---~g~~v~~g~~dG~l~ald 422 (488)
T cd00216 368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT---AGNLVFAGAADGYFRAFD 422 (488)
T ss_pred EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe---cCCeEEEECCCCeEEEEE
Confidence 9999999998887765431 111 11222 335788888899988764
No 315
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=1.5e-07 Score=101.48 Aligned_cols=215 Identities=13% Similarity=0.236 Sum_probs=148.9
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC-cEE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-KIV 409 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-~I~ 409 (587)
+..++|..|....+|++|+-+.++|+.|+..|.|+++++.+|........+... +.-+.|.-++..+|.+++... -..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sa-vT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSA-VTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccc-cccccccCCcceeeeeccccCchHH
Confidence 455667889999999999999999999999999999999999988877765543 233444444444455444444 567
Q ss_pred EEeCCC-CcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC---CCcceeEEEEeCCCCEEE
Q 007855 410 QWDMNT-KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLA 485 (587)
Q Consensus 410 iwD~~t-~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~ 485 (587)
+|++.+ +...++| ..-.++.|+.....-+.|+.-....|||+.+...+..+..+ ....-.+..|+|+..+++
T Consensus 1171 LW~~~s~~~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred HhccccccCccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 899864 3444444 34567888765444455555567899999988766553322 233447788999988776
Q ss_pred EEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEE
Q 007855 486 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 565 (587)
Q Consensus 486 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~ 565 (587)
- || .+||.+....+..+..|.-.. .=.|+|.|.-++.-+ .|||+++.++++....-.. ..+.
T Consensus 1247 n---dG--vLWDvR~~~aIh~FD~ft~~~------~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~Ldq--c~Vt 1308 (1516)
T KOG1832|consen 1247 N---DG--VLWDVRIPEAIHRFDQFTDYG------GGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSLDQ--CAVT 1308 (1516)
T ss_pred e---Cc--eeeeeccHHHHhhhhhheecc------cccccCCCceEEeec-----hhhhhHHHHHHhcCccccc--eEEE
Confidence 4 44 689998876666555554221 136999999988876 4899999888776654333 4456
Q ss_pred EcC
Q 007855 566 WHP 568 (587)
Q Consensus 566 ~sp 568 (587)
|+.
T Consensus 1309 FNs 1311 (1516)
T KOG1832|consen 1309 FNS 1311 (1516)
T ss_pred ecc
Confidence 665
No 316
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=6e-05 Score=82.19 Aligned_cols=195 Identities=12% Similarity=0.192 Sum_probs=129.7
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc-eeeEEEecCCCeEEEEeCCC-----eEEEEECCC
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA-VRDISFCNDGTKFLTASYDK-----NIKYWDTET 371 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-V~~l~fs~dg~~l~s~s~Dg-----~I~vWd~~t 371 (587)
.|+|+ ++. +..++.|+.+|.|.+.+- .-+.++.+..+... |..+.......+|++.+.|+ .|+||+++.
T Consensus 27 ~isc~--~s~-~~~vvigt~~G~V~~Ln~--s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek 101 (933)
T KOG2114|consen 27 AISCC--SSS-TGSVVIGTADGRVVILNS--SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEK 101 (933)
T ss_pred ceeEE--cCC-CceEEEeeccccEEEecc--cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccc
Confidence 45554 555 778999999998888764 56666888888777 55555444557888877765 499999863
Q ss_pred C------cEE---EEee--c---CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---C-CcEEEEEccCCCCeeEEE
Q 007855 372 G------QVI---RTFS--T---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---T-KEITQEYDQHLGAVNTIT 433 (587)
Q Consensus 372 ~------~~i---~~~~--~---~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---t-~~~~~~~~~h~~~I~~i~ 433 (587)
- +++ +.+. . ..+..+++++.+ -..+++|..+|.|..+.=. . +....-......+|+.+.
T Consensus 102 ~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~---l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~ 178 (933)
T KOG2114|consen 102 VDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED---LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLA 178 (933)
T ss_pred cCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc---ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeE
Confidence 2 344 2222 1 222345555554 3689999999999998421 1 121222223467999999
Q ss_pred EecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCc
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
+..++..++....-..|.+|.+....+.......+..++.|.++++....|++++ +..|.+|+....
T Consensus 179 ~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 179 LRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred EecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 9988887333333357999998855544444556788899999987666566655 456999988754
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.35 E-value=0.00089 Score=67.43 Aligned_cols=244 Identities=13% Similarity=0.149 Sum_probs=151.3
Q ss_pred EEEEccCCCcEEEEEe----------CCCeEEEEecCCCCeeeEEE--cc-cC----CceeeEEEecCCCeEEEEeC--C
Q 007855 301 AIRFFPKYGHLILSAG----------MDTKVKIWDVFNSGKCMRTY--MG-HS----KAVRDISFCNDGTKFLTASY--D 361 (587)
Q Consensus 301 ~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~--~~-h~----~~V~~l~fs~dg~~l~s~s~--D 361 (587)
.+..+|+ ++.+++++ ..-.|.+||. .+-.+...+ .. |. .....++++.||++++.... .
T Consensus 40 ~~~~spd-gk~~y~a~T~~sR~~rG~RtDvv~~~D~-~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 40 NVALSPD-GKTIYVAETFYSRGTRGERTDVVEIWDT-QTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp EEEE-TT-SSEEEEEEEEEEETTEEEEEEEEEEEET-TTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred ceeECCC-CCEEEEEEEEEeccccccceeEEEEEec-CcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCC
Confidence 3567888 77777643 3456999999 566555433 22 11 12345788999999887654 4
Q ss_pred CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC-CCcEEEEE----ccCCCC-eeEEEEe
Q 007855 362 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEY----DQHLGA-VNTITFV 435 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-t~~~~~~~----~~h~~~-I~~i~~s 435 (587)
-.|.|.|+..++.+..+.... |..+.|.+. .-|.+-|.||.+....+. .|+..+.. .....+ ...-.+.
T Consensus 118 ~SVtVVDl~~~kvv~ei~~PG---C~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~ 192 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTPG---CWLIYPSGN--RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYS 192 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGTS---EEEEEEEET--TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEE
T ss_pred CeEEEEECCCCceeeeecCCC---EEEEEecCC--CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceE
Confidence 689999999999999887655 444445443 348899999999999887 45544332 111222 2333455
Q ss_pred cCCCEEEEEECCCCEEEEECCCCeEE--EEeecC---------CCcceeEEEEeCCCCEEEEEECC----------CeEE
Q 007855 436 DNNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP---------HMHSMPSISLHPNTNWLAAQSLD----------NQIL 494 (587)
Q Consensus 436 p~~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~---------~~~~i~~i~~sp~g~~l~~~s~d----------g~I~ 494 (587)
..+..++-.+..|.|+--|+...... ..+... ..+...-+++++..+.|++.-.. ..|.
T Consensus 193 ~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVW 272 (342)
T PF06433_consen 193 RDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVW 272 (342)
T ss_dssp TTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEE
T ss_pred CCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEE
Confidence 55667777888999999998765432 222111 11234557888766555553221 2488
Q ss_pred EEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEE-cCCCcEEEEeCCCCeeEEEEecC
Q 007855 495 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKCH 557 (587)
Q Consensus 495 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sg-s~dG~I~vwd~~t~~~~~~l~~h 557 (587)
+||+.+++++.++.. ...+.+|..+.+.+ +|++. ..++.|.+||..+|+++.++..-
T Consensus 273 v~D~~t~krv~Ri~l------~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 273 VYDLKTHKRVARIPL------EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEETTTTEEEEEEEE------EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEECCCCeEEEEEeC------CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 889988887755443 23355788888776 55544 46789999999999999988743
No 318
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.35 E-value=0.00054 Score=65.23 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=73.6
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
|++++.|+..|.+++.++ +++.....+.....-=......+++..+..++.|++....|..+..++...+.+....+.-
T Consensus 63 gdfVV~GCy~g~lYfl~~-~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP 141 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCV-KTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSP 141 (354)
T ss_pred CCEEEEEEccCcEEEEEe-cchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccc
Confidence 678999999999999999 7887766665332222233456689999999999999999999999999887766554322
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
.....+ .-|+++...|.|.--..+..
T Consensus 142 ~i~~g~--~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 142 VIAPGD--GSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred eecCCC--ceEEEEeccceEEEEccCCC
Confidence 222111 23666666677766665554
No 319
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=98.31 E-value=0.00053 Score=76.87 Aligned_cols=145 Identities=15% Similarity=0.257 Sum_probs=105.8
Q ss_pred CCCeEEEE-eCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCC----CCcEEEEEeCCCcEEEEeCCCCc--EEEE-E
Q 007855 351 DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD----KQNILLAGMSDKKIVQWDMNTKE--ITQE-Y 422 (587)
Q Consensus 351 dg~~l~s~-s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~----~~~~l~sg~~dg~I~iwD~~t~~--~~~~-~ 422 (587)
+.++|+.- .....|.-.|++.|+.+..+..+....+..+.|... ...-.++|-++..|..||.|-.. ++.. .
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 33444433 345789999999999999999888776777777532 12347888899999999998642 3321 1
Q ss_pred c--cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 423 D--QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 423 ~--~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
. ......+|++-..+| +||+|+.+|.||+||- .+...++...+...+|.+|.++.+|+||++.| +..|.+++.
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 1 233456778777666 7999999999999994 44445555556688999999999999998877 556777664
No 320
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.30 E-value=0.00069 Score=73.85 Aligned_cols=237 Identities=15% Similarity=0.225 Sum_probs=142.1
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc-----e-eeEEEecCCCeEEEEe---------CCCeEEEEECCCCcE
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA-----V-RDISFCNDGTKFLTAS---------YDKNIKYWDTETGQV 374 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----V-~~l~fs~dg~~l~s~s---------~Dg~I~vWd~~t~~~ 374 (587)
..++.++.+|.|.-+|. .+++.+..+...... | ....+. +..++.++ .++.|..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~-~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDA-ETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEEC-CCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCce
Confidence 57788888999999999 788888776543321 1 111222 23455543 468899999999999
Q ss_pred EEEeecCCc-ceEE---------E-------E-ccC-CCCCcEEEEEeCCC------------------cEEEEeCCCCc
Q 007855 375 IRTFSTGKI-PYVV---------K-------L-NPD-DDKQNILLAGMSDK------------------KIVQWDMNTKE 417 (587)
Q Consensus 375 i~~~~~~~~-~~~~---------~-------~-~~~-~~~~~~l~sg~~dg------------------~I~iwD~~t~~ 417 (587)
+..+..... .... . + .+. .....++++++.++ .|..+|+.+++
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 988865321 1000 0 0 000 01235677777665 79999999999
Q ss_pred EEEEEccCCCCe------eEEEEe----cCCC---EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEE
Q 007855 418 ITQEYDQHLGAV------NTITFV----DNNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL 484 (587)
Q Consensus 418 ~~~~~~~h~~~I------~~i~~s----p~~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l 484 (587)
.+-.++.-...+ ....+. -++. .+++++.+|.+...|..+++.+-..... ...++.+| ..+
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~v 341 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GLV 341 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ceE
Confidence 888764211111 111111 1232 5778888999999999999887665321 11223333 222
Q ss_pred EEE------------------ECCCeEEEEEcCCceeecccceecccc-----cccceEEEEEcCCCCEEEEEcCCCcEE
Q 007855 485 AAQ------------------SLDNQILIYSTRERFQLNKKKRFAGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCW 541 (587)
Q Consensus 485 ~~~------------------s~dg~I~iwd~~~~~~~~~~~~~~~~~-----~~~~i~~l~~spdg~~L~sgs~dG~I~ 541 (587)
+++ ..+|.|.-+|+.++..+-......... .......+. -.+.+|++++.+|.|+
T Consensus 342 yv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~--~~g~~v~~g~~dG~l~ 419 (488)
T cd00216 342 YLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLA--TAGNLVFAGAADGYFR 419 (488)
T ss_pred EEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceE--ecCCeEEEECCCCeEE
Confidence 222 235778888887776543332210000 000001122 2467899999999999
Q ss_pred EEeCCCCeeEEEEecC
Q 007855 542 FWDWKSCKVFRTLKCH 557 (587)
Q Consensus 542 vwd~~t~~~~~~l~~h 557 (587)
.+|..+|+.+.+++..
T Consensus 420 ald~~tG~~lW~~~~~ 435 (488)
T cd00216 420 AFDATTGKELWKFRTP 435 (488)
T ss_pred EEECCCCceeeEEECC
Confidence 9999999999888753
No 321
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.29 E-value=2.3e-05 Score=84.78 Aligned_cols=186 Identities=15% Similarity=0.167 Sum_probs=129.1
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 419 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~ 419 (587)
...++|++++ +++|+-|+.+|.|++.+....- ...+.+ ++....+.++++|+.||+|.|..+-+.+..
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~-~~~~~~---------s~~~~~Gey~asCS~DGkv~I~sl~~~~~~ 106 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP-KTNFDH---------SSSILEGEYVASCSDDGKVVIGSLFTDDEI 106 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCcc-cccccc---------cccccCCceEEEecCCCcEEEeeccCCccc
Confidence 3557777775 5689999999999999876432 222211 111456679999999999999999888877
Q ss_pred EEEccCCCCeeEEEEecC-----CCEEEEEECCCCEEEEECCC---CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC
Q 007855 420 QEYDQHLGAVNTITFVDN-----NRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 420 ~~~~~h~~~I~~i~~sp~-----~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg 491 (587)
.++. ...++.+|+++|+ .+++++|+.-| +.++.-+- ...+ ......++|.++.|. |+++|-++.+|
T Consensus 107 ~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v--~l~~~eG~I~~i~W~--g~lIAWand~G 180 (846)
T KOG2066|consen 107 TQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV--VLSEGEGPIHSIKWR--GNLIAWANDDG 180 (846)
T ss_pred eeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce--eeecCccceEEEEec--CcEEEEecCCC
Confidence 7665 4578999999997 57899999988 77776431 1222 223467789999996 77888888666
Q ss_pred eEEEEEcCCceeecccceecccc-cccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 492 QILIYSTRERFQLNKKKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
|++||+..+..+.......... ....-+.+.|.++.+ |+.|=.| +|+|..++
T Consensus 181 -v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 181 -VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK 233 (846)
T ss_pred -cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence 9999998876665443322211 123345688877654 4555444 68888776
No 322
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.29 E-value=4.7e-07 Score=95.07 Aligned_cols=198 Identities=15% Similarity=0.212 Sum_probs=128.5
Q ss_pred CCCeEEEEEccCCC-cEEEEEeCCCeEEEEecCCCCee-eEEEcccCCceeeEEEec-CCCeEEEEe----CCCeEEEEE
Q 007855 296 TKGVSAIRFFPKYG-HLILSAGMDTKVKIWDVFNSGKC-MRTYMGHSKAVRDISFCN-DGTKFLTAS----YDKNIKYWD 368 (587)
Q Consensus 296 ~~~V~~l~~sp~~g-~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fs~-dg~~l~s~s----~Dg~I~vWd 368 (587)
...+.|++++-+.. .+++.|..+|.|-+-.+...... .....+|....++++|++ |.+.|+.|- .|..+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 44677888776534 57888999999999988544333 345567889999999998 556666652 356899999
Q ss_pred CCCC--cEEE--Eeec--CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEccCCCCeeEEEEec-CCCE
Q 007855 369 TETG--QVIR--TFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVD-NNRR 440 (587)
Q Consensus 369 ~~t~--~~i~--~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~~h~~~I~~i~~sp-~~~~ 440 (587)
+.++ .+.. .|.. .....++++. ....++++|.....+.++|++... ....+ ....+..+.+.| ...+
T Consensus 136 i~s~ltvPke~~~fs~~~l~gqns~cwl---rd~klvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp~~~nY 210 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSSSTLDGQNSVCWL---RDTKLVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDPFSPNY 210 (783)
T ss_pred cccccCCCccccccccccccCccccccc---cCcchhhcccccchhhhhhhhhhhhhhhhh--hhhhcccceecCCCCCc
Confidence 9887 2222 1222 1222244444 344689999999999999998432 22222 334667788888 6667
Q ss_pred EEEEECCCCEEEEE-CCCC-eEEEEee---cCCCcceeEEEEeCC--CCEEEEEECCCeEEEEEcC
Q 007855 441 FVTSSDDKSLRVWE-FGIP-VVIKYIS---EPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 441 l~s~s~Dg~I~iwd-~~~~-~~~~~~~---~~~~~~i~~i~~sp~--g~~l~~~s~dg~I~iwd~~ 499 (587)
+++-. ||.|.+|| .+.- .++..+. ......+..++|.|. |...+..-..++|++|++.
T Consensus 211 ~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 211 FCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred eeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 76655 89999999 3322 2222221 112234888999994 3333344455889999875
No 323
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.29 E-value=0.00022 Score=68.95 Aligned_cols=186 Identities=15% Similarity=0.166 Sum_probs=105.6
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-------cCCceeeEEEecC------CCeEEEEeCCCeEE
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-------HSKAVRDISFCND------GTKFLTASYDKNIK 365 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-------h~~~V~~l~fs~d------g~~l~s~s~Dg~I~ 365 (587)
=..++|||+ +.+||.+...|+|+++|+ .+..+..+.. -..+|..|.|..- ...|++..++|.++
T Consensus 46 WRkl~WSpD-~tlLa~a~S~G~i~vfdl--~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~ 122 (282)
T PF15492_consen 46 WRKLAWSPD-CTLLAYAESTGTIRVFDL--MGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLR 122 (282)
T ss_pred heEEEECCC-CcEEEEEcCCCeEEEEec--ccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceee
Confidence 456899999 999999999999999999 3344434332 2356777888652 22577778888888
Q ss_pred EEECCC-----CcEEEEeec----CCcceEEEEccCCCCCcEEEEEeC-CCcEEEEeCCCCcEEEEEccCCCCeeEEEEe
Q 007855 366 YWDTET-----GQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 366 vWd~~t-----~~~i~~~~~----~~~~~~~~~~~~~~~~~~l~sg~~-dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s 435 (587)
-|-+.. .+....|.. .+.+..+.+++ .. ++|++|+. ...-.. -......+++-.+.
T Consensus 123 Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p--~h-~LLlVgG~~~~~~~~-----------s~a~~~GLtaWRiL 188 (282)
T PF15492_consen 123 SYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP--KH-RLLLVGGCEQNQDGM-----------SKASSCGLTAWRIL 188 (282)
T ss_pred eEEEEcccCCcceeeEEEEecccCCCceeEEEEcC--CC-CEEEEeccCCCCCcc-----------ccccccCceEEEEc
Confidence 776532 234444443 22333444444 33 45555553 221000 00111222222222
Q ss_pred cCCCE--EEEEECCC------CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 436 DNNRR--FVTSSDDK------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 436 p~~~~--l~s~s~Dg------~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.+..+ .++...|+ +..+|.+-+...... .......|..|.++|+|..|++...+|.|.+|++.+-.
T Consensus 189 ~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~-~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 189 SDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR-QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCCcEEEccccCccccccccccceeeccceeeeec-cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 22211 11222221 123333332222111 12356789999999999999999999999999987643
No 324
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.28 E-value=0.00012 Score=79.93 Aligned_cols=207 Identities=13% Similarity=0.136 Sum_probs=135.9
Q ss_pred EEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC-----cEEEEeCCCC-----
Q 007855 347 SFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTK----- 416 (587)
Q Consensus 347 ~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iwD~~t~----- 416 (587)
+|++.+..++.|+.+|.|.+.+- +-+.++.|...... .+.+.....+.++|++.+.|+ .|++|++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~s-iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQS-IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchh-hhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 46778889999999999888763 23444556544433 344444444556777766654 5899998642
Q ss_pred -cEEE--EEcc-----CCCCeeEEEEecCCCEEEEEECCCCEEEEECCC---CeEEEEeecCCCcceeEEEEeCCCCEEE
Q 007855 417 -EITQ--EYDQ-----HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI---PVVIKYISEPHMHSMPSISLHPNTNWLA 485 (587)
Q Consensus 417 -~~~~--~~~~-----h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 485 (587)
.++. .+.. ...++.+++.+.+-+.+|+|-.+|.|.++.-+. ......+......+|+.+++..+++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2331 1112 356789999999999999999999999986422 1222333445778999999999988744
Q ss_pred EEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-cCCCC
Q 007855 486 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-CHEGV 560 (587)
Q Consensus 486 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~-~h~~~ 560 (587)
....-..|.+|.+.... .....+..+ ...+.|..|++...-+++++.. .|.+|+.....+-..+. +|...
T Consensus 188 Fv~Tt~~V~~y~l~gr~--p~~~~ld~~--G~~lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~ 258 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRT--PSLKVLDNN--GISLNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKE 258 (933)
T ss_pred EEEecceeEEEEecCCC--cceeeeccC--CccceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEE
Confidence 44556779999987543 222333333 4567777787765535555444 69999987766666666 66543
No 325
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.20 E-value=0.0022 Score=64.31 Aligned_cols=230 Identities=12% Similarity=0.175 Sum_probs=133.9
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEe----------
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF---------- 378 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~---------- 378 (587)
++.|+.|..+| |.++++.......+.. +...|..|...++-+.|++-+ |+.+.++++..-......
T Consensus 7 ~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~ 82 (275)
T PF00780_consen 7 GDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS 82 (275)
T ss_pred CCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence 77899999999 8888883333333333 233499999999877777665 599999998765444311
Q ss_pred ---ecCCcceEEEEc-cCCCCCcEEEEEeCCCcEEEEeCCCC-----cEEEEEccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 379 ---STGKIPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 379 ---~~~~~~~~~~~~-~~~~~~~~l~sg~~dg~I~iwD~~t~-----~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
.......+..+. .....+...++......|.+|..... ....++. -...+.+++|. ++.|+.+..+ .
T Consensus 83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~-~ 158 (275)
T PF00780_consen 83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSK-G 158 (275)
T ss_pred ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCC-c
Confidence 112222333333 11222233444444558888877653 3445554 44788999998 5577777754 4
Q ss_pred EEEEECCCCeEEEEeecCC-----------CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec-ccceeccccccc
Q 007855 450 LRVWEFGIPVVIKYISEPH-----------MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAG 517 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~-----------~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~ 517 (587)
..+.|+.++.......... ..++..+.+ +++.+|++. +..-.+.+.. +.... ....+..
T Consensus 159 f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~~-G~~~r~~~i~W~~----- 229 (275)
T PF00780_consen 159 FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNKN-GEPSRKSTIQWSS----- 229 (275)
T ss_pred eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcCC-CCcCcccEEEcCC-----
Confidence 7888998665543332111 112223333 345555543 3333334443 32222 1122222
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 558 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~ 558 (587)
....+++ ...||++.+.+ .|.||++.++++++.+....
T Consensus 230 ~p~~~~~--~~pyli~~~~~-~iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 230 APQSVAY--SSPYLIAFSSN-SIEVRSLETGELVQTIPLPN 267 (275)
T ss_pred chhEEEE--ECCEEEEECCC-EEEEEECcCCcEEEEEECCC
Confidence 2333555 34588877765 49999999999999887544
No 326
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.19 E-value=0.0013 Score=66.30 Aligned_cols=258 Identities=17% Similarity=0.188 Sum_probs=152.9
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC----------CCeEEEEECCCCcEEEEeecCCcce---
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTGKIPY--- 385 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~----------Dg~I~vWd~~t~~~i~~~~~~~~~~--- 385 (587)
+.|.|.|. .+++.+-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-.+...+..+..+.
T Consensus 17 ~rv~viD~-d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~ 93 (342)
T PF06433_consen 17 SRVYVIDA-DSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV 93 (342)
T ss_dssp EEEEEEET-TTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B
T ss_pred ceEEEEEC-CCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee
Confidence 57999998 67777766543 22334678999998887542 3469999999999888776554321
Q ss_pred -----EEEEccCCCCCcEEEEE--eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-
Q 007855 386 -----VVKLNPDDDKQNILLAG--MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI- 457 (587)
Q Consensus 386 -----~~~~~~~~~~~~~l~sg--~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~- 457 (587)
...++.++ .++++. +---.|.+.|+..++.+.++.-. .+..+--+. .+.|.+-|.||++....+..
T Consensus 94 ~~~~~~~~ls~dg---k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P--GC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~ 167 (342)
T PF06433_consen 94 VPYKNMFALSADG---KFLYVQNFTPATSVTVVDLAAKKVVGEIDTP--GCWLIYPSG-NRGFSMLCGDGSLLTVTLDAD 167 (342)
T ss_dssp S--GGGEEE-TTS---SEEEEEEESSSEEEEEEETTTTEEEEEEEGT--SEEEEEEEE-TTEEEEEETTSCEEEEEETST
T ss_pred cccccceEEccCC---cEEEEEccCCCCeEEEEECCCCceeeeecCC--CEEEEEecC-CCceEEEecCCceEEEEECCC
Confidence 22333322 222222 22346777777788777776422 122222222 35688999999999998873
Q ss_pred CeEEEE---eecCCCcc-eeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec--------ccccccceEEEEEc
Q 007855 458 PVVIKY---ISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--------GHIVAGYACQVNFS 525 (587)
Q Consensus 458 ~~~~~~---~~~~~~~~-i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~i~~l~~s 525 (587)
++.... +..+...+ +..-.+...+..++..+.+|.|+-.|+...... ....+. ..-..+.-.-++++
T Consensus 168 Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~-~~~~~~~~t~~e~~~~WrPGG~Q~~A~~ 246 (342)
T PF06433_consen 168 GKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAK-FGKPWSLLTDAEKADGWRPGGWQLIAYH 246 (342)
T ss_dssp SSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEE-EEEEEESS-HHHHHTTEEE-SSS-EEEE
T ss_pred CCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCccc-ccCcccccCccccccCcCCcceeeeeec
Confidence 333221 12222222 234455556666666788999999888654311 111111 01111122237888
Q ss_pred CCCCEEEEEc---CCC-------cEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE-CCCcEEEcC
Q 007855 526 PDGRFVMSGD---GEG-------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 587 (587)
Q Consensus 526 pdg~~L~sgs---~dG-------~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 587 (587)
+..+.|++-- .+| .|+++|+.+++.+.++.. ..++.+|..+.++..+|++.+ .++.|.|||
T Consensus 247 ~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D 318 (342)
T PF06433_consen 247 AASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYD 318 (342)
T ss_dssp TTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred cccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence 7665554422 122 499999999999999984 235778999987777887665 578999987
No 327
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.16 E-value=0.00069 Score=73.40 Aligned_cols=153 Identities=11% Similarity=0.150 Sum_probs=98.3
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE--------------------------------------
Q 007855 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-------------------------------------- 445 (587)
Q Consensus 404 ~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-------------------------------------- 445 (587)
..+.+.+.|..+.+...++.-- +....+.++++++++++++
T Consensus 213 y~~~vSvID~etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~ 291 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFK 291 (635)
T ss_pred eeEEEEEEECccceEEEEEEeC-CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEE
Confidence 3456777788877666554322 2345567777777776665
Q ss_pred --CCCCEEEEECCC-----CeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeec-----ccceecc
Q 007855 446 --DDKSLRVWEFGI-----PVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLN-----KKKRFAG 512 (587)
Q Consensus 446 --~Dg~I~iwd~~~-----~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~-----~~~~~~~ 512 (587)
.++.|.+.|..+ ...+..+ +-......+.++|+|+++++++ .+++|.|+|+.....+. ......+
T Consensus 292 ~V~gn~V~VID~~t~~~~~~~v~~yI--PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vva 369 (635)
T PRK02888 292 TIGGSKVPVVDGRKAANAGSALTRYV--PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVA 369 (635)
T ss_pred EECCCEEEEEECCccccCCcceEEEE--ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEE
Confidence 124577888776 4455555 3455678899999999887765 48999999987643211 0011111
Q ss_pred c-ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------CeeEEEEecCCC
Q 007855 513 H-IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEG 559 (587)
Q Consensus 513 ~-~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t----------~~~~~~l~~h~~ 559 (587)
. .....-...+|.++|....+-.-|..|..|++.. ...+.++..|-+
T Consensus 370 evevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~ 427 (635)
T PRK02888 370 EPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQ 427 (635)
T ss_pred eeccCCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCc
Confidence 1 0111122478999999888888899999999876 345555655544
No 328
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=1.6e-05 Score=80.58 Aligned_cols=213 Identities=13% Similarity=0.156 Sum_probs=137.1
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc---EEEEeecCC-cceEEEEccCCCCCcEEEEEeC-CCcEEEEe
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGK-IPYVVKLNPDDDKQNILLAGMS-DKKIVQWD 412 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~-dg~I~iwD 412 (587)
-|...|+.+... -.+++++++.||.++.|--..-. .+..+..+- ....++.+. .+.++.+++. |..++++|
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfD 82 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFD 82 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEE
Confidence 377777776554 45699999999999999754312 222222211 112233333 2356777666 99999999
Q ss_pred CCCCcEEEEEc--cCCCCeeEEEEecCC--CEEEEEECCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEEE
Q 007855 413 MNTKEITQEYD--QHLGAVNTITFVDNN--RRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 413 ~~t~~~~~~~~--~h~~~I~~i~~sp~~--~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
+.+-..+.-++ --.+.+.++.-..+- ..-++.-.++.|.|+|-.... ....+..-|..+|.++.+.+.+..+++.
T Consensus 83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi 162 (558)
T KOG0882|consen 83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI 162 (558)
T ss_pred eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence 88765443222 122222222211111 223334467889999976554 4445556699999999999999999999
Q ss_pred ECCCeEEEEEcCCceeeccc----------ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 488 SLDNQILIYSTRERFQLNKK----------KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 488 s~dg~I~iwd~~~~~~~~~~----------~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
...|.|.-|......+.... ..+.-........++.|+|+|..+.+-+.|..|+++++++|++++.+
T Consensus 163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 99999999988642111110 00111122455678999999999999999999999999998876544
No 329
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.12 E-value=5.3e-05 Score=82.11 Aligned_cols=254 Identities=11% Similarity=0.092 Sum_probs=142.3
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~ 378 (587)
+++++|+|. .-+|++|-.-|.+.+|.. .+.+.......|..+|..+.||++|..|+++..-|.|.+|...--..++..
T Consensus 62 atSLCWHpe-~~vLa~gwe~g~~~v~~~-~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~ 139 (1416)
T KOG3617|consen 62 ATSLCWHPE-EFVLAQGWEMGVSDVQKT-NTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTS 139 (1416)
T ss_pred hhhhccChH-HHHHhhccccceeEEEec-CCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccc
Confidence 667999998 788899999999999998 566666666789999999999999999999999999999987632222211
Q ss_pred -----ecCCc--ceEEEEccCCCC---CcEEEEEeCCCcEE-EEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 379 -----STGKI--PYVVKLNPDDDK---QNILLAGMSDKKIV-QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 379 -----~~~~~--~~~~~~~~~~~~---~~~l~sg~~dg~I~-iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
..... .+|..+.++... ....++.+.+..+- .++.+........ .|. -+|+|..|+.++.+
T Consensus 140 ~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~-~ks-------gv~~g~~F~~~~~~ 211 (1416)
T KOG3617|consen 140 NIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSD-EKS-------GVPKGTEFLFAGKS 211 (1416)
T ss_pred hhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccc-ccc-------CCCCCcEEEEEcCC
Confidence 11222 234444443111 01123333333332 3333211111111 011 13677888888899
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC------------------------------CeEEEEE
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD------------------------------NQILIYS 497 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d------------------------------g~I~iwd 497 (587)
|+|+-.|-..... ........ ..+-|.+...-+++...+ |.|.+-.
T Consensus 212 GtVyyvdq~g~~~-~V~k~dS~---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sE 287 (1416)
T KOG3617|consen 212 GTVYYVDQNGRQR-TVHKLDSE---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSE 287 (1416)
T ss_pred ceEEEEcCCCcEE-EEEEccch---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccc
Confidence 9888877433221 11110000 111122211111111111 1111111
Q ss_pred cCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC-CC------CeeEEEEec---CCCCEEEEEEc
Q 007855 498 TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KS------CKVFRTLKC---HEGVCIGCEWH 567 (587)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~-~t------~~~~~~l~~---h~~~V~~v~~s 567 (587)
.. + .+.+ ..--+......+.+++++..+..|+.|...|.+.+|-- .. +.-...+.+ ..+.|+.|.|.
T Consensus 288 ss-G-vLr~-~eKyg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg 364 (1416)
T KOG3617|consen 288 SS-G-VLRK-SEKYGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWG 364 (1416)
T ss_pred cc-c-cccC-CcchhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEec
Confidence 10 0 1111 11112233456788999999999999999999999953 22 123344443 34689999999
Q ss_pred CC
Q 007855 568 PL 569 (587)
Q Consensus 568 p~ 569 (587)
|.
T Consensus 365 ~~ 366 (1416)
T KOG3617|consen 365 PI 366 (1416)
T ss_pred cc
Confidence 83
No 330
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.11 E-value=0.0027 Score=60.61 Aligned_cols=185 Identities=10% Similarity=0.064 Sum_probs=110.1
Q ss_pred ccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc
Q 007855 305 FPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP 384 (587)
Q Consensus 305 sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~ 384 (587)
.++...+++.|+..+.+.--|. .+++.+..-. -...|.+-+.- -|++++.|++.|.+.+.+..+|..+..|..-..+
T Consensus 19 ~~dskT~v~igSHs~~~~avd~-~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~v 95 (354)
T KOG4649|consen 19 CNDSKTLVVIGSHSGIVIAVDP-QSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETV 95 (354)
T ss_pred ecCCceEEEEecCCceEEEecC-CCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhh
Confidence 3444567888888888888887 5665554321 12223332222 4678999999999999999999888888765555
Q ss_pred eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEe
Q 007855 385 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 385 ~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~ 464 (587)
.+-+.... .+.++..|+.|+..+..|.++...+...+...+--.+-++.+-...|..+...|.|.--...........
T Consensus 96 k~~a~~d~--~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~~~~~~w 173 (354)
T KOG4649|consen 96 KVRAQCDF--DGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPYSSTEFW 173 (354)
T ss_pred ccceEEcC--CCceEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCCCcceeh
Confidence 44333222 2358999999999999999999888776544443344445553334444555555544443332111111
Q ss_pred ecCCCcceeE--EEEeCCCCEEEEEECCCeEEEEE
Q 007855 465 SEPHMHSMPS--ISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 465 ~~~~~~~i~~--i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
......++.+ ++ -+..+..++-||.+.-++
T Consensus 174 ~~~~~~PiF~splc---v~~sv~i~~VdG~l~~f~ 205 (354)
T KOG4649|consen 174 AATRFGPIFASPLC---VGSSVIITTVDGVLTSFD 205 (354)
T ss_pred hhhcCCccccCcee---ccceEEEEEeccEEEEEc
Confidence 1111122211 11 134556666677777666
No 331
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.11 E-value=0.00077 Score=69.36 Aligned_cols=215 Identities=16% Similarity=0.227 Sum_probs=129.2
Q ss_pred CeEEEEECCCCcEEEEeecCC--cceEEEEccCCC----CCcEEEEEeC---------C-CcEEEEeCCCC-----cE--
Q 007855 362 KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDD----KQNILLAGMS---------D-KKIVQWDMNTK-----EI-- 418 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~----~~~~l~sg~~---------d-g~I~iwD~~t~-----~~-- 418 (587)
..|+|.|..+.+.+..+.... .+.+++...... ...+|++|+. . |.|.++++... ++
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 468899988888887765443 333333332221 2467888764 2 89999999884 22
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe-EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEE
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
+... ...++|++|+-. ++ +|+++. .+.|.+|++.... ............+.++... ++++++|.....|.++.
T Consensus 82 i~~~-~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~ 155 (321)
T PF03178_consen 82 IHST-EVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLR 155 (321)
T ss_dssp EEEE-EESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEE
T ss_pred EEEE-eecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEE
Confidence 2222 357889999888 44 455444 4789999998877 5444433333355555554 66999999988888875
Q ss_pred cCC-ceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-------C--eeEEEEecC-CCCEEEE--
Q 007855 498 TRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------C--KVFRTLKCH-EGVCIGC-- 564 (587)
Q Consensus 498 ~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t-------~--~~~~~l~~h-~~~V~~v-- 564 (587)
... ...+.. +.......+++++.|-++++.+++++.+|.|.++.... + ++......| ...|+++
T Consensus 156 ~~~~~~~l~~---va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 156 YDEENNKLIL---VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp EETTTE-EEE---EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred EEccCCEEEE---EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 543 222222 22222245678888887778999999999999998752 2 233333333 3456766
Q ss_pred -EEcCC--CCC-----EEEEEECCCcEEE
Q 007855 565 -EWHPL--EQS-----KVATCGWDGLIKY 585 (587)
Q Consensus 565 -~~sp~--~~~-----~l~s~g~DG~I~i 585 (587)
.+.|. +.. .++.++.+|.|.+
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEE
Confidence 44441 222 4888889998863
No 332
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.09 E-value=0.0078 Score=63.41 Aligned_cols=262 Identities=15% Similarity=0.169 Sum_probs=172.5
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~ 376 (587)
....+...+.+....++-.....+.+.+.. ..........-...-..++.++.+..++ +...+..|.+.|+.+.....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~-~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~ 110 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDAT-SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLG 110 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccc-cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceee
Confidence 455666777733444443333355555542 2221111111113345778888887554 44456899999999999999
Q ss_pred EeecCCcceEEEEccCCCCCcEEEEEe--CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEE
Q 007855 377 TFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVW 453 (587)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iw 453 (587)
....+..+..+.+.+... .+.++-. .++.+.+.|..++..+.....-..+ ..+++.|++..++++. .++.|.+.
T Consensus 111 ~~~vG~~P~~~~~~~~~~--~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi 187 (381)
T COG3391 111 SIPVGLGPVGLAVDPDGK--YVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVI 187 (381)
T ss_pred EeeeccCCceEEECCCCC--EEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEE
Confidence 998888888899888654 4555555 4799999999999888875544444 8899999999766665 78899999
Q ss_pred ECCCCeEEEEee----cCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 454 EFGIPVVIKYIS----EPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 454 d~~~~~~~~~~~----~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
|........ -. ......-..+.+.|+|.++.+.... +.+...|..++........... . ....+.++|
T Consensus 188 ~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~---~-~~~~v~~~p 262 (381)
T COG3391 188 DTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS---G-APRGVAVDP 262 (381)
T ss_pred eCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc---C-CCCceeECC
Confidence 977665553 11 1223344678899999977666544 5899998877654432111111 0 233488999
Q ss_pred CCCEEEEEcC-CCcEEEEeCCCCeeEEEEecCCC---CEEEEEEcC
Q 007855 527 DGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG---VCIGCEWHP 568 (587)
Q Consensus 527 dg~~L~sgs~-dG~I~vwd~~t~~~~~~l~~h~~---~V~~v~~sp 568 (587)
+|.++.+... .+.+.+.|..+......+..... .+..+++.+
T Consensus 263 ~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~ 308 (381)
T COG3391 263 AGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISP 308 (381)
T ss_pred CCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecccee
Confidence 9999988744 48899999998888777654332 344555544
No 333
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=9e-05 Score=74.32 Aligned_cols=83 Identities=14% Similarity=0.217 Sum_probs=70.6
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCC-CeEEEEeCCCeEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYW 367 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg-~~l~s~s~Dg~I~vW 367 (587)
+.-+.+|...|..|+|+|...-+|..++.+.+|+|.|+ .+..++..+..| ..+++++|..+. .+|..|-..|.|.||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dl-et~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlvy 263 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDL-ETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVY 263 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEec-ccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEE
Confidence 44567888999999999995558999999999999999 788888888888 789999998854 567778889999999
Q ss_pred ECCCCc
Q 007855 368 DTETGQ 373 (587)
Q Consensus 368 d~~t~~ 373 (587)
|++..+
T Consensus 264 D~R~~~ 269 (463)
T KOG1645|consen 264 DMRQPE 269 (463)
T ss_pred EccCCC
Confidence 998654
No 334
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.06 E-value=0.00041 Score=75.07 Aligned_cols=182 Identities=12% Similarity=0.095 Sum_probs=116.5
Q ss_pred EccCCCcEE-EEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC
Q 007855 304 FFPKYGHLI-LSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK 382 (587)
Q Consensus 304 ~sp~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~ 382 (587)
+.|+ |+.+ .+.-..+.+.+.|. .+.+...++.-- .....+.++++|+++++.+++ .+.+..+..+....
T Consensus 200 lpnD-Gk~l~~~~ey~~~vSvID~-etmeV~~qV~Vd-gnpd~v~~spdGk~afvTsyN-------sE~G~tl~em~a~e 269 (635)
T PRK02888 200 LPND-GKDLDDPKKYRSLFTAVDA-ETMEVAWQVMVD-GNLDNVDTDYDGKYAFSTCYN-------SEEGVTLAEMMAAE 269 (635)
T ss_pred cCCC-CCEeecccceeEEEEEEEC-ccceEEEEEEeC-CCcccceECCCCCEEEEeccC-------cccCcceeeecccc
Confidence 3444 4433 23334566777777 455555554322 244678899999999888753 33344444444444
Q ss_pred cceEEEEccCC-----CCCcEEEEEeCCCcEEEEeCCC----C-cEEEEEccCCCCeeEEEEecCCCEEEEEEC-CCCEE
Q 007855 383 IPYVVKLNPDD-----DKQNILLAGMSDKKIVQWDMNT----K-EITQEYDQHLGAVNTITFVDNNRRFVTSSD-DKSLR 451 (587)
Q Consensus 383 ~~~~~~~~~~~-----~~~~~l~sg~~dg~I~iwD~~t----~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg~I~ 451 (587)
...++.|.+.. ..+.+... .++.|.++|.++ + ..+..+ .-......+.++|+|+++++++. +.+|.
T Consensus 270 ~d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVS 346 (635)
T PRK02888 270 RDWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVT 346 (635)
T ss_pred CceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEE
Confidence 44555554431 11223333 357899999998 3 444444 35567788999999999877654 88999
Q ss_pred EEECCCCeE------------EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 452 VWEFGIPVV------------IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 452 iwd~~~~~~------------~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
|.|+.+... ...+. ....-...+|.++|+...+...|.+|..|++..
T Consensus 347 VIDv~k~k~~~~~~~~~~~~vvaeve--vGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 347 VIDVRKLDDLFDGKIKPRDAVVAEPE--LGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEChhhhhhhhccCCccceEEEeec--cCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 999987442 22222 233345678899999888899999999999865
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.04 E-value=0.0017 Score=68.27 Aligned_cols=235 Identities=11% Similarity=0.074 Sum_probs=130.2
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC------------------------------------------eeeEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG------------------------------------------KCMRT 335 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~------------------------------------------~~~~~ 335 (587)
.|+++.|.+. .--|+.|...|.|.||...... .+...
T Consensus 3 ~v~~vs~a~~-t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPE-TLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETT-TTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCC-CceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 5899999998 5667788888999998652110 01112
Q ss_pred EcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC---------cceEEEEc-----cCCCCCcEEEE
Q 007855 336 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLN-----PDDDKQNILLA 401 (587)
Q Consensus 336 ~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---------~~~~~~~~-----~~~~~~~~l~s 401 (587)
+....++|++++.|.-| +++.|..+|.+.|.|++....+..-.... .+.++.|. -+....-++++
T Consensus 82 ~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp E---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 23346789999998544 89999999999999999888887643322 22233332 12222357999
Q ss_pred EeCCCcEEEEeCC--C-CcE----EEEEccCCCCeeEEEEe-cC--------------------CCEEEEEECCCCEEEE
Q 007855 402 GMSDKKIVQWDMN--T-KEI----TQEYDQHLGAVNTITFV-DN--------------------NRRFVTSSDDKSLRVW 453 (587)
Q Consensus 402 g~~dg~I~iwD~~--t-~~~----~~~~~~h~~~I~~i~~s-p~--------------------~~~l~s~s~Dg~I~iw 453 (587)
|+..|.+.+|.+. . +.. ......+.++|..|... .+ -..+++...+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 9999999999774 1 211 22223466777776643 11 0234455557789999
Q ss_pred ECCCCeEEEEeecCCCcceeEEEE-----eCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 454 EFGIPVVIKYISEPHMHSMPSISL-----HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 454 d~~~~~~~~~~~~~~~~~i~~i~~-----sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
...+.+....... .......+++ ...+..|++-..+|.|++|.+-.-..+........ .....+...+++++|
T Consensus 241 ~~~~~k~~~K~~~-~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~-~d~~~~~~ssis~~G 318 (395)
T PF08596_consen 241 KPPKSKGAHKSFD-DPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPP-LDSRRLSSSSISRNG 318 (395)
T ss_dssp -TT---EEEEE-S-S-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS----HHHHTT-EE-TTS
T ss_pred eCCCCcccceeec-cccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCc-cccccccccEECCCC
Confidence 9987776655542 2223333444 23567788889999999999877555543333211 112233346778888
Q ss_pred CEEEEEcC
Q 007855 529 RFVMSGDG 536 (587)
Q Consensus 529 ~~L~sgs~ 536 (587)
..++-.+.
T Consensus 319 di~~~~gp 326 (395)
T PF08596_consen 319 DIFYWTGP 326 (395)
T ss_dssp -EEEE-SS
T ss_pred CEEEEeCc
Confidence 87765543
No 336
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.04 E-value=0.0012 Score=69.94 Aligned_cols=89 Identities=19% Similarity=0.276 Sum_probs=68.2
Q ss_pred EEEECCCC--eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 451 RVWEFGIP--VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 451 ~iwd~~~~--~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
++|++... +.+.....+....+.+++++|+...|+.|+.||.|.+||...+....... .-..+.++|+|+|
T Consensus 239 ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka-------~~~P~~iaWHp~g 311 (545)
T PF11768_consen 239 CIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKA-------EFIPTLIAWHPDG 311 (545)
T ss_pred EEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeee-------cccceEEEEcCCC
Confidence 45665433 33344445788899999999999999999999999999987653221111 2335569999999
Q ss_pred CEEEEEcCCCcEEEEeCC
Q 007855 529 RFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 529 ~~L~sgs~dG~I~vwd~~ 546 (587)
.++++|+..|.|.+||+.
T Consensus 312 ai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 312 AIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cEEEEEcCCceEEEEEee
Confidence 999999999999999974
No 337
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.03 E-value=0.02 Score=58.89 Aligned_cols=274 Identities=11% Similarity=0.126 Sum_probs=134.4
Q ss_pred EEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccC-CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC
Q 007855 303 RFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 381 (587)
Q Consensus 303 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 381 (587)
+|.+++.++|+++..||.-.+|-+.-....+..+.... .......++++++.|+-......|+-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 46777456666666676655554432344444454433 33446778888888876666789999999998866555544
Q ss_pred Ccce-EEEEccCCCCCcEEEEEe-----------------------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 382 KIPY-VVKLNPDDDKQNILLAGM-----------------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 382 ~~~~-~~~~~~~~~~~~~l~sg~-----------------------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
..-. ...+..+.+. .. ++|. ....|...|+.+|+....+. -...+.-+.|+|.
T Consensus 122 ~~~~g~gt~v~n~d~-t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~ 198 (386)
T PF14583_consen 122 DDWKGYGTWVANSDC-TK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHVQFSPT 198 (386)
T ss_dssp TTEEEEEEEEE-TTS-SE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEEEEETT
T ss_pred cccccccceeeCCCc-cE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCcccCCC
Confidence 3322 2444444332 22 2222 12346677888887655553 4567888999997
Q ss_pred CCEEEEEECCC-----CEEEEECCCC-eEEEEeec-CCCcceeEEEEeCCCCEEEEEEC-----CCeEEEEEcCCceeec
Q 007855 438 NRRFVTSSDDK-----SLRVWEFGIP-VVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLN 505 (587)
Q Consensus 438 ~~~l~s~s~Dg-----~I~iwd~~~~-~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~s~-----dg~I~iwd~~~~~~~~ 505 (587)
...+++=|..| .-|||-+++. ...+.+.. .....+..=-|.|+|..|..-+. +..|.-+++.++....
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~ 278 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR 278 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence 77766655443 1366766432 22222221 22344555678999987655322 3356667776653321
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCC----------------cEEEEeCCCCeeEEEEe---------cCCC-
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG----------------KCWFWDWKSCKVFRTLK---------CHEG- 559 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG----------------~I~vwd~~t~~~~~~l~---------~h~~- 559 (587)
.... .....+..++||++++-=+.|. .|+++++..+....... ++..
T Consensus 279 -~~~~------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~ 351 (386)
T PF14583_consen 279 -LMEM------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQV 351 (386)
T ss_dssp -EEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSST
T ss_pred -EEeC------CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCcc
Confidence 1111 1233466788998876433321 46678887766432211 1111
Q ss_pred CEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 560 VCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.=-...|+|++..+|+++...|...||
T Consensus 352 ~hPhp~FSPDgk~VlF~Sd~~G~~~vY 378 (386)
T PF14583_consen 352 THPHPSFSPDGKWVLFRSDMEGPPAVY 378 (386)
T ss_dssp T----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred CCCCCccCCCCCEEEEECCCCCCccEE
Confidence 124578999777788888888887765
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.00 E-value=6e-06 Score=87.00 Aligned_cols=203 Identities=14% Similarity=0.206 Sum_probs=126.8
Q ss_pred CceeeEEEecC--CCeEEEEeCCCeEEEEECCCCcEE-EEeecCCcceEEEEccCCCCCcEEEEEe----CCCcEEEEeC
Q 007855 341 KAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGM----SDKKIVQWDM 413 (587)
Q Consensus 341 ~~V~~l~fs~d--g~~l~s~s~Dg~I~vWd~~t~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~sg~----~dg~I~iwD~ 413 (587)
..+.|++++-+ ...++.|..+|.|.+-.++...-- ..+..+....|.+..+..-..+.|++|- .|..+.|||+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence 44666666543 346778888999999887654333 3444444444444444444446777774 3568999999
Q ss_pred CCC--cEEE--EEc-cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEE
Q 007855 414 NTK--EITQ--EYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQ 487 (587)
Q Consensus 414 ~t~--~~~~--~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~ 487 (587)
.++ .+.. .+. +.....++++|..+.+.+++|...+.+.++|++........ .....+..+.+.| .++|+++-
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~s--vnTk~vqG~tVdp~~~nY~cs~ 214 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSS--VNTKYVQGITVDPFSPNYFCSN 214 (783)
T ss_pred ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhh--hhhhhcccceecCCCCCceecc
Confidence 877 2211 122 24456678999988899999999999999999844322221 1344577888899 77888776
Q ss_pred ECCCeEEEEEc-CCceeecccceecccccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCC
Q 007855 488 SLDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 488 s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~i~~l~~spd--g~~L~sgs~dG~I~vwd~~ 546 (587)
. ||.|.+||. +.-.................+..++|+|- |...+..-..++|+++|+.
T Consensus 215 ~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 215 S-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred c-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence 6 999999993 32211111111111111234677999994 4344444456789999974
No 339
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=97.99 E-value=0.028 Score=59.22 Aligned_cols=274 Identities=10% Similarity=0.110 Sum_probs=150.9
Q ss_pred cCCCcEEEEEeCCCeEEEEecCCCC-ee--eEEEcccCCceeeEEEec----CCCeEEEEeCCCeEEEEECCC-------
Q 007855 306 PKYGHLILSAGMDTKVKIWDVFNSG-KC--MRTYMGHSKAVRDISFCN----DGTKFLTASYDKNIKYWDTET------- 371 (587)
Q Consensus 306 p~~g~~L~sgs~Dg~I~iWd~~~~~-~~--~~~~~~h~~~V~~l~fs~----dg~~l~s~s~Dg~I~vWd~~t------- 371 (587)
+++...+++||..|.++||+....+ +. +..-..-..+|..|..-. .....++.-.-+.+.||.+..
T Consensus 34 ~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~ 113 (418)
T PF14727_consen 34 PSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEH 113 (418)
T ss_pred CCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCccc
Confidence 4446799999999999999983322 11 111123457888887643 233334445567888887721
Q ss_pred C-----cEEEEeecCCcceEEEEccCCCC--CcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE
Q 007855 372 G-----QVIRTFSTGKIPYVVKLNPDDDK--QNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS 444 (587)
Q Consensus 372 ~-----~~i~~~~~~~~~~~~~~~~~~~~--~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~ 444 (587)
+ +.+.........+.+++-+.+.. ..++++-+.||.+.+|+-+.-.....+.. .--...+++.+....|+++
T Consensus 114 g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt~ 192 (418)
T PF14727_consen 114 GNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVTA 192 (418)
T ss_pred CcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEEe
Confidence 1 12223334455555565555443 37899999999999999776654444443 3334567888888999999
Q ss_pred ECCCCEEEEECCCCeEE-----------------EE----eecCCCcceeEEE---EeCCCCEEEEEECCCeEEEEEcCC
Q 007855 445 SDDKSLRVWEFGIPVVI-----------------KY----ISEPHMHSMPSIS---LHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~~-----------------~~----~~~~~~~~i~~i~---~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
+.+..|..|....-... +. ....-...+..+. ++.....+++-+ ...+.+.+...
T Consensus 193 sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLg-er~Lf~l~~~G 271 (418)
T PF14727_consen 193 SSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLG-ERSLFCLKDNG 271 (418)
T ss_pred cCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEe-cceEEEEcCCC
Confidence 99989998876321000 00 0001122222332 222222333333 33444444432
Q ss_pred ceeecccceecccccccceEEE--EEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCE-EEEEEcCCCCCEEEE
Q 007855 501 RFQLNKKKRFAGHIVAGYACQV--NFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVAT 576 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l--~~spdg-~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~s 576 (587)
.+...+.+......-.+..+ ...+.. ..++.++.++.+.||. ..+++...+....+| ..++..+.-..+|++
T Consensus 272 --~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~~~PVal~v~~~~~~~G~IV~ 347 (418)
T PF14727_consen 272 --SLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLPHVPVALSVANFNGLKGLIVS 347 (418)
T ss_pred --eEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCCCCCEEEEecccCCCCceEEE
Confidence 33333334333222111122 112222 2588899999999986 445555554433333 222222224568999
Q ss_pred EECCCcEEE
Q 007855 577 CGWDGLIKY 585 (587)
Q Consensus 577 ~g~DG~I~i 585 (587)
-+.+|.|.+
T Consensus 348 Ls~~G~L~v 356 (418)
T PF14727_consen 348 LSDEGQLSV 356 (418)
T ss_pred EcCCCcEEE
Confidence 999999865
No 340
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.97 E-value=0.012 Score=64.60 Aligned_cols=192 Identities=15% Similarity=0.175 Sum_probs=116.8
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccC-Ccee----------eEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS-KAVR----------DISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~----------~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.++.|.-.|. .+++.+..+.... ..+. .+++ .+..++.++.|+.|.-.|..+|+.+..
T Consensus 69 ~g~vyv~s~~g~v~AlDa-~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDA-KTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWS 145 (527)
T ss_pred CCEEEEECCCCcEEEEEC-CCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 346666777888888898 7788777664321 1111 1222 234677888899999999999999988
Q ss_pred eecCCcc--eEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCC----------------------
Q 007855 378 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLG---------------------- 427 (587)
Q Consensus 378 ~~~~~~~--~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~---------------------- 427 (587)
+...... ..+...|.-.+ ..++++.. +|.|..+|..+|+.+-.+..-..
T Consensus 146 ~~~~~~~~~~~~tssP~v~~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~ 224 (527)
T TIGR03075 146 KKNGDYKAGYTITAAPLVVK-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP 224 (527)
T ss_pred cccccccccccccCCcEEEC-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence 7643221 11111111112 23555543 68999999999988766532111
Q ss_pred ---------Ce-eEEEEecCCCEEEEEECC-----C-----------CEEEEECCCCeEEEEeecCCC--------ccee
Q 007855 428 ---------AV-NTITFVDNNRRFVTSSDD-----K-----------SLRVWEFGIPVVIKYISEPHM--------HSMP 473 (587)
Q Consensus 428 ---------~I-~~i~~sp~~~~l~s~s~D-----g-----------~I~iwd~~~~~~~~~~~~~~~--------~~i~ 473 (587)
.+ ..+++.+...+++.+... + +|.-.|+++++..-.+...+. ....
T Consensus 225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~ 304 (527)
T TIGR03075 225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI 304 (527)
T ss_pred CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence 11 134666666666665422 2 577778888877655543211 1112
Q ss_pred EEEEeCCCC---EEEEEECCCeEEEEEcCCceee
Q 007855 474 SISLHPNTN---WLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 474 ~i~~sp~g~---~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
-+.+..+|+ .++.++.+|.+.++|..+++.+
T Consensus 305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred EEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 223334665 7888999999999999887664
No 341
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=97.95 E-value=4.1e-05 Score=74.19 Aligned_cols=235 Identities=14% Similarity=0.187 Sum_probs=137.1
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-E----EEEeecC-------------CcceEEEEccCCCCCcEEE
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-V----IRTFSTG-------------KIPYVVKLNPDDDKQNILL 400 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-~----i~~~~~~-------------~~~~~~~~~~~~~~~~~l~ 400 (587)
....|+++.|...|.+|++|...|.|.++.-+... | ...|+.+ ..+..+.|.... +.+.++
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-~r~hFL 103 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-GRNHFL 103 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-CcceEE
Confidence 34679999999999999999999999999755332 1 1122221 122344554443 335677
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEc---------cCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCeEEEEeecCCCc
Q 007855 401 AGMSDKKIVQWDMNTKEITQEYD---------QHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 401 sg~~dg~I~iwD~~t~~~~~~~~---------~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
..+.|.+|++|-+....+...-. ...+++++..-. .+--.+ .|..|.. .+.+.....|..
T Consensus 104 lstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l----~lprls~hd~iiaa------~p~rvyaNaH~y 173 (460)
T COG5170 104 LSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKEL----LLPRLSEHDEIIAA------KPCRVYANAHPY 173 (460)
T ss_pred EecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHh----hcccccccceEEEe------ccceecccccee
Confidence 78889999999987653221111 011222221100 000000 1111111 112223346888
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccc---ccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCC
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~ 546 (587)
.+.++.+..+...++++ .|=.|.+|++.-......+...+.| .....|++..|+|.. ..+.-.++.|.|++-|++
T Consensus 174 hiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlR 252 (460)
T COG5170 174 HINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLR 252 (460)
T ss_pred EeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhh
Confidence 89999999888777765 4778999987532211111122222 123457778899954 456677789999999997
Q ss_pred CCee------EEE----------EecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 547 SCKV------FRT----------LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 547 t~~~------~~~----------l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...+ +.. +..-...|..+.|++ .++++++-+. -+|+|||
T Consensus 253 q~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~-ngryIlsRdy-ltvkiwD 307 (460)
T COG5170 253 QSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSD-NGRYILSRDY-LTVKIWD 307 (460)
T ss_pred hhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcC-CCcEEEEecc-ceEEEEe
Confidence 4321 111 111234688899999 7777777664 4899997
No 342
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.93 E-value=0.0016 Score=73.97 Aligned_cols=233 Identities=13% Similarity=0.156 Sum_probs=135.6
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 419 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~ 419 (587)
...|.++.|..+...++.+..+|.|.+-|.++......-.....+.+++|+|+.. +++..+..++|.+- ..+-.++
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee---~l~liT~~~tll~m-T~~f~~i 143 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEE---LLALITGRQTLLFM-TKDFEPI 143 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCc---EEEEEeCCcEEEEE-eccccch
Confidence 3589999999999999999999999999998887666666667777888888654 56666665665543 2322222
Q ss_pred EEEcc-----CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE-----EC
Q 007855 420 QEYDQ-----HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-----SL 489 (587)
Q Consensus 420 ~~~~~-----h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-----s~ 489 (587)
....- ..+....+-|-.....| -|+ .|.....+........... .....-++|+|--+|.++++. ..
T Consensus 144 ~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~ek~~~~~-~~~~~~~~IsWRgDg~~fAVs~~~~~~~ 220 (1265)
T KOG1920|consen 144 AEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKEKALEQI-EQDDHKTSISWRGDGEYFAVSFVESETG 220 (1265)
T ss_pred hccccccccccccccceecccccceee-ecc-hhhhcccccccccccccch-hhccCCceEEEccCCcEEEEEEEeccCC
Confidence 22111 11222223332211111 111 1111111111110000000 122234679999999999984 33
Q ss_pred CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEE---cCCCcEEEEeCCC---CeeEEEEecCCCCEEE
Q 007855 490 DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG---DGEGKCWFWDWKS---CKVFRTLKCHEGVCIG 563 (587)
Q Consensus 490 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg---s~dG~I~vwd~~t---~~~~~~l~~h~~~V~~ 563 (587)
...|++||.. + .++... ....+.-.+++|-|.|..+++- .+++.|.+|.-+. |.....+......|..
T Consensus 221 ~RkirV~drE-g-~Lns~s----e~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~ 294 (1265)
T KOG1920|consen 221 TRKIRVYDRE-G-ALNSTS----EPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE 294 (1265)
T ss_pred ceeEEEeccc-c-hhhccc----CcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence 3789999976 2 121111 1112333459999999999875 3566799998432 2222233334445999
Q ss_pred EEEcCCCCCEEEE---EECCCcEEEc
Q 007855 564 CEWHPLEQSKVAT---CGWDGLIKYW 586 (587)
Q Consensus 564 v~~sp~~~~~l~s---~g~DG~I~iW 586 (587)
++|+. ++..|+. +.....|++|
T Consensus 295 L~Wns-~sdiLAv~~~~~e~~~v~lw 319 (1265)
T KOG1920|consen 295 LAWNS-NSDILAVVTSNLENSLVQLW 319 (1265)
T ss_pred eeecC-CCCceeeeecccccceEEEE
Confidence 99999 6777777 4555559988
No 343
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.91 E-value=0.025 Score=59.59 Aligned_cols=248 Identities=15% Similarity=0.166 Sum_probs=153.0
Q ss_pred EEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcE
Q 007855 321 VKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNI 398 (587)
Q Consensus 321 I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~ 398 (587)
+.+++. .+......+..+. ....+...+++..+.... ....+.+.+............+ ..+..+.+.+... ..
T Consensus 13 ~~v~~~-~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~--~v 88 (381)
T COG3391 13 VSVINT-GTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGN--KV 88 (381)
T ss_pred eEEEee-cccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCC--eE
Confidence 445544 2333333333222 456777888775544433 2235666665533322322333 3344555555433 46
Q ss_pred EEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC---CCCEEEEECCCCeEEEEeecCCCcceeEE
Q 007855 399 LLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD---DKSLRVWEFGIPVVIKYISEPHMHSMPSI 475 (587)
Q Consensus 399 l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i 475 (587)
++....+..|.+.|+.+.........-. ....+.+.+++..+.++.. ++++.+.|-.+...+..+.... .+ ..+
T Consensus 89 yv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~-~P-~~~ 165 (381)
T COG3391 89 YVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGN-TP-TGV 165 (381)
T ss_pred EEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCC-Cc-ceE
Confidence 7777778999999988877776654332 6678999999988777765 6889999999888888754322 33 899
Q ss_pred EEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeeE
Q 007855 476 SLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVF 551 (587)
Q Consensus 476 ~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d---G~I~vwd~~t~~~~ 551 (587)
++.|+|+.+++.. .++.|.+++........ ......-.....-..+.++|+|.++...... +.+...|..++...
T Consensus 166 a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 166 AVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred EECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 9999999666655 78999999976654332 1100001112233458999999977655443 58999999888776
Q ss_pred EE-EecCCCCEEEEEEcCCCCCEEEEE
Q 007855 552 RT-LKCHEGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 552 ~~-l~~h~~~V~~v~~sp~~~~~l~s~ 577 (587)
.. +..-......+..+| .+..+...
T Consensus 245 ~~~~~~~~~~~~~v~~~p-~g~~~yv~ 270 (381)
T COG3391 245 ATDLPVGSGAPRGVAVDP-AGKAAYVA 270 (381)
T ss_pred EeccccccCCCCceeECC-CCCEEEEE
Confidence 65 222221345677888 45555544
No 344
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.90 E-value=0.0016 Score=69.12 Aligned_cols=228 Identities=16% Similarity=0.228 Sum_probs=138.4
Q ss_pred CeeeEEEcccCCceeeEEEecCCCeEEEEeC---C-CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC
Q 007855 330 GKCMRTYMGHSKAVRDISFCNDGTKFLTASY---D-KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 330 ~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~---D-g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 405 (587)
+...+.+..-...+..-.|+|++..++-.+. . ..+.++++.+++.............-.|+|++. .++++...|
T Consensus 182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~--~l~f~~~rd 259 (425)
T COG0823 182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGS--KLAFSSSRD 259 (425)
T ss_pred CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCC--EEEEEECCC
Confidence 4444455555566777889998887664432 2 469999999998877777666666778888664 677787777
Q ss_pred Cc--EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC-C--CEEEEECCCCeEEEEeecCCCcceeEEEEeCC
Q 007855 406 KK--IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 480 (587)
Q Consensus 406 g~--I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~ 480 (587)
|. |+++|+.++...+ +....+.-..=.|+|+|+.++-.++. | .|.++++.......... ....-..-.|+|+
T Consensus 260 g~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~--~~~~~~~p~~Spd 336 (425)
T COG0823 260 GSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTF--SGGGNSNPVWSPD 336 (425)
T ss_pred CCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeec--cCCCCcCccCCCC
Confidence 75 5666887776443 54444444467889999998877654 3 46666776665533332 2222237789999
Q ss_pred CCEEEEEECC-Ce--EEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCCCCeeEEEEe
Q 007855 481 TNWLAAQSLD-NQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 481 g~~l~~~s~d-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG--~I~vwd~~t~~~~~~l~ 555 (587)
|++|+..+.. |. |.++++.++..+. .+.. ......-+|.++|+.++..+..+ .+..--..+++....+.
T Consensus 337 G~~i~~~~~~~g~~~i~~~~~~~~~~~~---~lt~---~~~~e~ps~~~ng~~i~~~s~~~~~~~l~~~s~~g~~~~~~~ 410 (425)
T COG0823 337 GDKIVFESSSGGQWDIDKNDLASGGKIR---ILTS---TYLNESPSWAPNGRMIMFSSGQGGGSVLSLVSLDGRVSRPLP 410 (425)
T ss_pred CCEEEEEeccCCceeeEEeccCCCCcEE---Eccc---cccCCCCCcCCCCceEEEeccCCCCceEEEeeccceeEEEEe
Confidence 9999888753 44 6666665443211 1111 11122356888888876554433 22222223444444444
Q ss_pred cCCCCEEEEEEcC
Q 007855 556 CHEGVCIGCEWHP 568 (587)
Q Consensus 556 ~h~~~V~~v~~sp 568 (587)
...+.+..-+|+|
T Consensus 411 ~~~~~~~~p~w~~ 423 (425)
T COG0823 411 LADGDVRVPAWSP 423 (425)
T ss_pred ccCcceecccccC
Confidence 4445555556654
No 345
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.90 E-value=0.00061 Score=72.12 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=86.2
Q ss_pred EEEEeecCCcceEEEEccCCCCCcEEEEE----eCCCc----EEEEeCCCCcEEEE---EccCCCCeeEEEEecCCCEEE
Q 007855 374 VIRTFSTGKIPYVVKLNPDDDKQNILLAG----MSDKK----IVQWDMNTKEITQE---YDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 374 ~i~~~~~~~~~~~~~~~~~~~~~~~l~sg----~~dg~----I~iwD~~t~~~~~~---~~~h~~~I~~i~~sp~~~~l~ 442 (587)
.+..+.....+..+.|+...+ +.+.+. +.+|. -.+|++..++..+. --.....|.|++++|+...|+
T Consensus 198 vL~yirTE~dPl~~~Fs~~~~--~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLv 275 (545)
T PF11768_consen 198 VLSYIRTENDPLDVEFSLNQP--YQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLV 275 (545)
T ss_pred EEEEEEecCCcEEEEccCCCC--cEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEE
Confidence 444555666677777775444 333332 22343 34566655432211 124678899999999999999
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
.|+.||+|.+||...+...... ..-..+.++|||+|.+|++|+..|.|.+||+.-
T Consensus 276 lGC~DgSiiLyD~~~~~t~~~k---a~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 276 LGCEDGSIILYDTTRGVTLLAK---AEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEecCCeEEEEEcCCCeeeeee---ecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 9999999999998877544332 345578899999999999999999999999753
No 346
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0041 Score=66.27 Aligned_cols=224 Identities=13% Similarity=0.156 Sum_probs=113.0
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 371 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t 371 (587)
+....-....|.++|+ +++++.++ ||...|+.. ....... .+.-..++|.+.+ .+++-...++|.|+.--.
T Consensus 28 lg~~~~~p~~ls~npn-gr~v~V~g-~geY~iyt~-~~~r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPN-GRFVLVCG-DGEYEIYTA-LAWRNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEE-SS--SEEEE-TT-SSEEEEEE-TTEEEEEET-TTTEEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTE
T ss_pred CCCCCcCCeeEEECCC-CCEEEEEc-CCEEEEEEc-cCCcccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCc
Confidence 3334455889999999 88888854 678888774 2222221 1345678898844 577776688899963322
Q ss_pred CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEE
Q 007855 372 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLR 451 (587)
Q Consensus 372 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~ 451 (587)
......+..... +-.+.. +.+|...+ ++.|.+||+.+++.+..+... +|..+.|++++.+++..+.+ .+.
T Consensus 99 ~~~~k~i~~~~~--~~~If~----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~ 168 (443)
T PF04053_consen 99 NEVVKSIKLPFS--VEKIFG----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIY 168 (443)
T ss_dssp E-TT-----SS---EEEEE-----SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEE
T ss_pred cccceEEcCCcc--cceEEc----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEE
Confidence 222223333321 222322 34455554 448999999999999998743 48999999999999998865 688
Q ss_pred EEECCCC-----------eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 452 VWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 452 iwd~~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
|++.... ..+..+.+ ....|.+.+|..+ .|+-.+.. .|..+ ..+... .+..+ ...+.
T Consensus 169 il~~~~~~~~~~~~~g~e~~f~~~~E-~~~~IkSg~W~~d--~fiYtT~~-~lkYl--~~Ge~~-~i~~l-----d~~~y 236 (443)
T PF04053_consen 169 ILKYNLEAVAAIPEEGVEDAFELIHE-ISERIKSGCWVED--CFIYTTSN-HLKYL--VNGETG-IIAHL-----DKPLY 236 (443)
T ss_dssp EEEE-HHHHHHBTTTB-GGGEEEEEE-E-S--SEEEEETT--EEEEE-TT-EEEEE--ETTEEE-EEEE------SS--E
T ss_pred EEEecchhcccccccCchhceEEEEE-ecceeEEEEEEcC--EEEEEcCC-eEEEE--EcCCcc-eEEEc-----CCceE
Confidence 8776544 01122211 2457888888765 44444433 55552 222211 11111 12222
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
-+.+.+..+.|+..+.++.|..+.+.
T Consensus 237 llgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 237 LLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEccCCEEEEEECCCCEEEEEEC
Confidence 35566666677777777777777653
No 347
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.041 Score=58.46 Aligned_cols=167 Identities=11% Similarity=0.143 Sum_probs=93.9
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc------eEEEEc-cC
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLN-PD 392 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~------~~~~~~-~~ 392 (587)
.|.||+. .|+++..+.-..+.|.++.|+.+ ..|++...||.++++|+. |+. .+..+... .+..+. ..
T Consensus 62 ~I~iys~--sG~ll~~i~w~~~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSS--SGKLLSSIPWDSGRIVGMGWTDD-EELVVVQSDGTVRVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECC--CCCEeEEEEECCCCEEEEEECCC-CeEEEEEcCCEEEEEeCC-Cce--eechhhhccccCccccccccccc
Confidence 5999987 67777776544589999999875 456677789999999987 333 33322211 111111 11
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEc---c-----CC-CCeeE-EEEecCCCEEEEEECCCCEEEEECCCCeEE
Q 007855 393 DDKQNILLAGMSDKKIVQWDMNTKE-ITQEYD---Q-----HL-GAVNT-ITFVDNNRRFVTSSDDKSLRVWEFGIPVVI 461 (587)
Q Consensus 393 ~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~---~-----h~-~~I~~-i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~ 461 (587)
...+ +++-..++.|.+..-.... ....+. . +. ..+.. ..++.+....+....++.+.+.+-.....
T Consensus 136 ~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~- 212 (410)
T PF04841_consen 136 YKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ- 212 (410)
T ss_pred CCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-
Confidence 1122 3333445555554332221 111110 0 00 01111 23344444555555555565444222111
Q ss_pred EEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 462 ~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
+ ...+++..|++||++++||.-..+|.+.+.+..
T Consensus 213 --i--~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD 246 (410)
T PF04841_consen 213 --I--DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD 246 (410)
T ss_pred --c--cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence 1 234689999999999999999999999888754
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.74 E-value=0.00022 Score=76.40 Aligned_cols=141 Identities=11% Similarity=0.088 Sum_probs=101.3
Q ss_pred CCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc
Q 007855 427 GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 506 (587)
Q Consensus 427 ~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~ 506 (587)
..|.--++...+++++.|+.-|.|++|+-..+...+.-.......+..++++++..++|+|+..|.|.++-+........
T Consensus 34 ~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 34 ARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred ceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 34444455667889999999999999998877766555444555677788899999999999999999998876332222
Q ss_pred cceecccc-cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC----eeEEEEecCCCCEEEEEEc
Q 007855 507 KKRFAGHI-VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC----KVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 507 ~~~~~~~~-~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~----~~~~~l~~h~~~V~~v~~s 567 (587)
...-..+. +...|++++|++++..|++|+..|+|.+-.+.+. .....+-.-.+.|..+...
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~ 179 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL 179 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc
Confidence 21111221 2567999999999999999999999999888772 1122222345567777665
No 349
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.69 E-value=0.014 Score=60.06 Aligned_cols=214 Identities=7% Similarity=0.132 Sum_probs=117.3
Q ss_pred eEEEEecCCCCeeeEEEcc-cCCceeeEEE---ecC----CCeEEEEeC----------CCeEEEEECCCC-----c--E
Q 007855 320 KVKIWDVFNSGKCMRTYMG-HSKAVRDISF---CND----GTKFLTASY----------DKNIKYWDTETG-----Q--V 374 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~-h~~~V~~l~f---s~d----g~~l~s~s~----------Dg~I~vWd~~t~-----~--~ 374 (587)
.|+|.|. .+.+.+.++.- ....|.+++. ..+ ..+|++|.. .|.|.++++... + .
T Consensus 3 ~i~l~d~-~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 3 SIRLVDP-TTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp EEEEEET-TTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred EEEEEeC-CCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 5677776 44545444432 2223444433 222 356666643 288999999884 2 2
Q ss_pred EEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEEE
Q 007855 375 IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 375 i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
+........+++++.. .. .|+++ ..+.|.+|++...+ ....-. .....+.++... ++++++|.....|.+
T Consensus 82 i~~~~~~g~V~ai~~~--~~---~lv~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF--NG---RLVVA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEESS-EEEEEEE--TT---EEEEE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEeecCcceEhhhh--CC---EEEEe-ecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 2333444444444433 22 34433 35899999998877 443322 233466666665 669999999999998
Q ss_pred EECCC-CeEEEEe-ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee--e--c-ccceecccccccceEEE---
Q 007855 453 WEFGI-PVVIKYI-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--L--N-KKKRFAGHIVAGYACQV--- 522 (587)
Q Consensus 453 wd~~~-~~~~~~~-~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~--~--~-~~~~~~~~~~~~~i~~l--- 522 (587)
+.++. ...+..+ .......++++.+-++++.++++..+|.|.++....... . . .+...........++++
T Consensus 154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~ 233 (321)
T PF03178_consen 154 LRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRG 233 (321)
T ss_dssp EEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE-
T ss_pred EEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEE
Confidence 86543 2323233 334456688888886767999999999999998753110 0 0 11111111223445555
Q ss_pred EEcC--CCC------EEEEEcCCCcEEE
Q 007855 523 NFSP--DGR------FVMSGDGEGKCWF 542 (587)
Q Consensus 523 ~~sp--dg~------~L~sgs~dG~I~v 542 (587)
++.| .+. .++.++.+|.|.+
T Consensus 234 ~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 234 SLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp -SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EeeecCCCCcccccceEEEEecCCEEEE
Confidence 5455 222 4778888888873
No 350
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.68 E-value=0.021 Score=60.75 Aligned_cols=191 Identities=17% Similarity=0.215 Sum_probs=97.9
Q ss_pred eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc------EEEEEccCCCCeeEEEEec
Q 007855 363 NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQEYDQHLGAVNTITFVD 436 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~------~~~~~~~h~~~I~~i~~sp 436 (587)
.|.||+.. |+.+..+.-.. ...+.+.+... ..|++-..||.+++||+.... .+....-....+..+.+..
T Consensus 62 ~I~iys~s-G~ll~~i~w~~-~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~ 137 (410)
T PF04841_consen 62 SIQIYSSS-GKLLSSIPWDS-GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK 137 (410)
T ss_pred EEEEECCC-CCEeEEEEECC-CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC
Confidence 36666653 45555544333 23334333322 347788899999999986333 1111111112222223333
Q ss_pred CCCEEEEEECCCCEEEEEC-CCCeEEEEeec-C------CCc-ceeE-EEEeCCCCEEEEEECCCeEEEEEcCCceeecc
Q 007855 437 NNRRFVTSSDDKSLRVWEF-GIPVVIKYISE-P------HMH-SMPS-ISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 506 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~-~~~~~~~~~~~-~------~~~-~i~~-i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~ 506 (587)
+| ++.-..++.+.+..- ......+.+.. + +.. .... ..++.+....+....++.|.+.+......
T Consensus 138 ~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~--- 212 (410)
T PF04841_consen 138 NG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ--- 212 (410)
T ss_pred CC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---
Confidence 44 222333444444432 21211111110 0 000 0111 22344444555555556666444322111
Q ss_pred cceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCCEEEEEEcC
Q 007855 507 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHP 568 (587)
Q Consensus 507 ~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-~~~V~~v~~sp 568 (587)
.. ..+.+..+++||+|++||.-..+|.+.+....-.+.+..+... ......+.|.-
T Consensus 213 ---i~---~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG 269 (410)
T PF04841_consen 213 ---ID---SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCG 269 (410)
T ss_pred ---cc---CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEEC
Confidence 11 1356888999999999999999999999987666677666654 34557777875
No 351
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.67 E-value=0.02 Score=59.65 Aligned_cols=245 Identities=16% Similarity=0.224 Sum_probs=125.0
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC----------------
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG---------------- 381 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~---------------- 381 (587)
.+.+.|+|+ .+++... +......+....|+|+|+.++... ++.|.+++..++...+.-..+
T Consensus 22 ~~~y~i~d~-~~~~~~~-l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE 98 (353)
T PF00930_consen 22 KGDYYIYDI-ETGEITP-LTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE 98 (353)
T ss_dssp EEEEEEEET-TTTEEEE-SS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred ceeEEEEec-CCCceEE-CcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceecccc
Confidence 477899999 5554443 333367899999999999998886 589999999888544332222
Q ss_pred --CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC---CeeEEEEecCCCEEEEEECCCCEEEEECC
Q 007855 382 --KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDNNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 382 --~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~---~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~ 456 (587)
.....+.|+|++. .+++.-..+..|..+.+. .+..... .+..+.+-.-|.-... -.+.|+|+.
T Consensus 99 v~~~~~~~~WSpd~~--~la~~~~d~~~v~~~~~~------~~~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~ 166 (353)
T PF00930_consen 99 VFDRRSAVWWSPDSK--YLAFLRFDEREVPEYPLP------DYSPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLA 166 (353)
T ss_dssp TSSSSBSEEE-TTSS--EEEEEEEE-TTS-EEEEE------EESSSTESS-EEEEEE--BTTS---E----EEEEEEESS
T ss_pred ccccccceEECCCCC--EEEEEEECCcCCceEEee------ccCCccccCCcccccccCCCCCcCCc----eEEEEEECC
Confidence 1123456666553 455555555555544321 1111111 2344444322222111 136778887
Q ss_pred CCeEEE-Eee---cCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceecccccccceEEEEEc-C
Q 007855 457 IPVVIK-YIS---EPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS-P 526 (587)
Q Consensus 457 ~~~~~~-~~~---~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s-p 526 (587)
+++... ... ......+..+.|.+++..|++.-.+ -.+.++|..++............-. .....+.|. +
T Consensus 167 ~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv-~~~~~~~~~~~ 245 (353)
T PF00930_consen 167 SGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV-DVYDPPHFLGP 245 (353)
T ss_dssp STCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS-SSSSEEEE-TT
T ss_pred CCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce-eeecccccccC
Confidence 776432 111 2356678999999999855444332 2356667655432211111111111 111234554 5
Q ss_pred CC-CEEEEEcCCCc--EEEEeCCCCeeEEEEecCCCCEEE-EEEcCCCCCEEEEEEC
Q 007855 527 DG-RFVMSGDGEGK--CWFWDWKSCKVFRTLKCHEGVCIG-CEWHPLEQSKVATCGW 579 (587)
Q Consensus 527 dg-~~L~sgs~dG~--I~vwd~~t~~~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~ 579 (587)
++ .+|.....+|. |.+++...+. ...+....-.|.. +.|.+.++.+.+++..
T Consensus 246 ~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~ 301 (353)
T PF00930_consen 246 DGNEFLWISERDGYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANG 301 (353)
T ss_dssp TSSEEEEEEETTSSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESS
T ss_pred CCCEEEEEEEcCCCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecC
Confidence 44 45556667775 5555665555 3345444455655 5677744445555554
No 352
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.66 E-value=0.027 Score=55.25 Aligned_cols=216 Identities=12% Similarity=0.191 Sum_probs=112.3
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-CCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-SKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
..+.+-...++.|.|.|+.+.++++....+.|...+. .++.++.+.-. .+-.-.|++..++.++++.-.++.+.+++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~--~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~ 92 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL--DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT 92 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET--T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC--CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence 3556666779999999987888888888999888776 57777776533 35578888887777766665678888777
Q ss_pred CCCCc-EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 369 TETGQ-VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 369 ~~t~~-~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+.... .+..- .+.-+.+.. ...+...+-.|+|.+.++.|+++-..
T Consensus 93 ~~~~~~~~~~~----------------------------~~~~~~l~~------~~~~N~G~EGla~D~~~~~L~v~kE~ 138 (248)
T PF06977_consen 93 IDDDTTSLDRA----------------------------DVQKISLGF------PNKGNKGFEGLAYDPKTNRLFVAKER 138 (248)
T ss_dssp E----TT--EE----------------------------EEEEEE---------S---SS--EEEEEETTTTEEEEEEES
T ss_pred Eeccccccchh----------------------------hceEEeccc------ccCCCcceEEEEEcCCCCEEEEEeCC
Confidence 64211 00000 000011100 01244567788888887777777776
Q ss_pred CCEEEEECCC---CeEEEEee-------cCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceeecccceecccc--
Q 007855 448 KSLRVWEFGI---PVVIKYIS-------EPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-- 514 (587)
Q Consensus 448 g~I~iwd~~~---~~~~~~~~-------~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~-- 514 (587)
.-..||.+.. ...+.... ......+.+++++|.. .+++....+..|.++|.. +..+.......+..
T Consensus 139 ~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~-G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 139 KPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQ-GRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT---EEEEEE-STTGGG-
T ss_pred CChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCC-CCEEEEEEeCCcccCc
Confidence 6666776653 21111111 1234457889999964 556666667888888854 33332222222110
Q ss_pred --cccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007855 515 --VAGYACQVNFSPDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 515 --~~~~i~~l~~spdg~~L~sgs~dG~I~vw 543 (587)
.-...-.|+|.++|++.+++ .-+..++|
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 01234458999999766555 44444443
No 353
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.65 E-value=0.00071 Score=73.69 Aligned_cols=109 Identities=16% Similarity=0.256 Sum_probs=86.8
Q ss_pred eeEEEecCCCeEEEEeC----CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE
Q 007855 344 RDISFCNDGTKFLTASY----DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 419 (587)
Q Consensus 344 ~~l~fs~dg~~l~s~s~----Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~ 419 (587)
+-.+|+|...+|++++. .|.|.|| .++|++-.....+-....++|+|.. .+|+.|-.-|.+.+|...+.+.-
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt~P~hatSLCWHpe~---~vLa~gwe~g~~~v~~~~~~e~h 94 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVTYPVHATSLCWHPEE---FVLAQGWEMGVSDVQKTNTTETH 94 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccccceehhhhccChHH---HHHhhccccceeEEEecCCceee
Confidence 34578998888888765 4788888 3567655555444445567777743 46788888899999999888877
Q ss_pred EEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECC
Q 007855 420 QEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 420 ~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~ 456 (587)
.....|..+|..+.|+++|..++++..-|.|.+|.+.
T Consensus 95 tv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 95 TVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred eeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 7777899999999999999999999999999999875
No 354
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.63 E-value=0.049 Score=59.85 Aligned_cols=240 Identities=14% Similarity=0.168 Sum_probs=137.4
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcc--cCC--ceeeEEEecCCCeEEEEe------CCCeEEEEECCCCcEEEEee
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMG--HSK--AVRDISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTFS 379 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h~~--~V~~l~fs~dg~~l~s~s------~Dg~I~vWd~~t~~~i~~~~ 379 (587)
..++.++.|+.|.-.|. .+++.+..... +.. .+++--.--++ .+++++ .+|.|..+|.++|+.+..+.
T Consensus 121 ~~v~v~t~dg~l~ALDa-~TGk~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 121 GKVFFGTLDARLVALDA-KTGKVVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred CEEEEEcCCCEEEEEEC-CCCCEEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 46777888999999998 78888776542 111 11111111134 455443 26899999999999988765
Q ss_pred cCCcceE-------------------------------EEEccCCCCCcEEEEEeCC-----C-----------cEEEEe
Q 007855 380 TGKIPYV-------------------------------VKLNPDDDKQNILLAGMSD-----K-----------KIVQWD 412 (587)
Q Consensus 380 ~~~~~~~-------------------------------~~~~~~~~~~~~l~sg~~d-----g-----------~I~iwD 412 (587)
....... .....+. ...+++.+..+ + .|.-.|
T Consensus 199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~-~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld 277 (527)
T TIGR03075 199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDP-ETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARD 277 (527)
T ss_pred CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcC-CCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEc
Confidence 4211100 0011121 23456655522 2 688889
Q ss_pred CCCCcEEEEEccCCCCe---------eEEEEecCCC---EEEEEECCCCEEEEECCCCeEEEE--------ee---cCCC
Q 007855 413 MNTKEITQEYDQHLGAV---------NTITFVDNNR---RFVTSSDDKSLRVWEFGIPVVIKY--------IS---EPHM 469 (587)
Q Consensus 413 ~~t~~~~~~~~~h~~~I---------~~i~~sp~~~---~l~s~s~Dg~I~iwd~~~~~~~~~--------~~---~~~~ 469 (587)
+++|++.-.++.....+ .-+.+..+++ .++.+..+|.+++.|-.+++.+.. .. .+..
T Consensus 278 ~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~ 357 (527)
T TIGR03075 278 PDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT 357 (527)
T ss_pred cccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence 99999887776422211 1122223565 678999999999999998877521 10 0000
Q ss_pred -cc----------------------------eeEEEEeCCCCEEEEEECC------------------------------
Q 007855 470 -HS----------------------------MPSISLHPNTNWLAAQSLD------------------------------ 490 (587)
Q Consensus 470 -~~----------------------------i~~i~~sp~g~~l~~~s~d------------------------------ 490 (587)
.+ -..++++|...++++...+
T Consensus 358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~ 437 (527)
T TIGR03075 358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD 437 (527)
T ss_pred CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence 00 0125666666666555444
Q ss_pred ---CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007855 491 ---NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 558 (587)
Q Consensus 491 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~ 558 (587)
|.|.-+|+.++...-.... ......+. + .-.+.+++.++.+|.++.+|.++|+.+..++...
T Consensus 438 ~~~g~l~AiD~~tGk~~W~~~~-~~p~~~~~---l--~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 438 DHMGSLIAWDPITGKIVWEHKE-DFPLWGGV---L--ATAGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCceeEEEEeCCCCceeeEecC-CCCCCCcc---e--EECCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 2344555555433221111 00000111 1 1245677888899999999999999999887654
No 355
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.62 E-value=0.043 Score=58.54 Aligned_cols=243 Identities=14% Similarity=0.230 Sum_probs=124.9
Q ss_pred CeEEEEEccCCCcEEEE-EeCC----CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC----------
Q 007855 298 GVSAIRFFPKYGHLILS-AGMD----TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK---------- 362 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~s-gs~D----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg---------- 362 (587)
.+..++++|+ +++||- -+.. ..|+++|+ .+++.+....... ....+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spd-g~~la~~~s~~G~e~~~l~v~Dl-~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~ 201 (414)
T PF02897_consen 125 SLGGFSVSPD-GKRLAYSLSDGGSEWYTLRVFDL-ETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYP 201 (414)
T ss_dssp EEEEEEETTT-SSEEEEEEEETTSSEEEEEEEET-TTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCC
T ss_pred EeeeeeECCC-CCEEEEEecCCCCceEEEEEEEC-CCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCC
Confidence 3446789999 666654 3443 45999999 6776665322111 122399999988877665443
Q ss_pred -eEEEEECCCCcE--EEEeecCCcce-EEEEccCCCCCcEEEEEeCCC---cEEEEeCCCC----cEEEEEccCCCCeeE
Q 007855 363 -NIKYWDTETGQV--IRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDK---KIVQWDMNTK----EITQEYDQHLGAVNT 431 (587)
Q Consensus 363 -~I~vWd~~t~~~--i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg---~I~iwD~~t~----~~~~~~~~h~~~I~~ 431 (587)
.|.+|.+.+... ...|....... .+.+....++..+++...... .|.+.++..+ .....+......+..
T Consensus 202 ~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~ 281 (414)
T PF02897_consen 202 RQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEY 281 (414)
T ss_dssp EEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EE
T ss_pred cEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEE
Confidence 378888877642 34454444333 444434444445555554443 4888888874 223333333344433
Q ss_pred EEEecCCCEEEEEEC---CCCEEEEECCCCeE---EEEeecCCCc--ceeEEEEeCCCCEEEEE-ECCC--eEEEEEcC-
Q 007855 432 ITFVDNNRRFVTSSD---DKSLRVWEFGIPVV---IKYISEPHMH--SMPSISLHPNTNWLAAQ-SLDN--QILIYSTR- 499 (587)
Q Consensus 432 i~~sp~~~~l~s~s~---Dg~I~iwd~~~~~~---~~~~~~~~~~--~i~~i~~sp~g~~l~~~-s~dg--~I~iwd~~- 499 (587)
..-+..+.+++.+.. .+.|...++..... ...+. ++.. .+..+.. .+.+|+.. ..++ .|+++++.
T Consensus 282 ~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 282 YVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCC
Confidence 333334444444432 35677778876652 22232 3333 4555554 34455544 3343 57888887
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEE-Ec---CCCcEEEEeCCCCeeE
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS-GD---GEGKCWFWDWKSCKVF 551 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~s-gs---~dG~I~vwd~~t~~~~ 551 (587)
+.... .... .. .+.+..+...+++..+.. .+ .-+.|+.||+.+++..
T Consensus 359 ~~~~~-~~~~-p~---~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 359 GKESR-EIPL-PE---AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp TEEEE-EEES-SS---SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred CcEEe-eecC-Cc---ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 33222 1111 11 233444555565554432 22 2356888888887653
No 356
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.62 E-value=0.014 Score=61.31 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=120.0
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE-EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-----
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR-TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----- 415 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~-~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t----- 415 (587)
.|+.+.|+++..-|+++...|.|.||.+...+... .-.... .-..+.+. ...++.-.+-|+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~--~~~~~~~~---------~~~~~~~~l~di~~r~~~~ 71 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPD--LDYNFRRF---------SLNNSPGKLTDISDRAPPS 71 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S-----------GGGSS-SEEE-GGG--TT
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcc--cCcccccc---------cccCCCcceEEehhhCCcc
Confidence 58999999998999999999999999876544322 000000 00011110 00111222333322
Q ss_pred ---C-cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec-------CCCcceeEEEEeC-----
Q 007855 416 ---K-EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHP----- 479 (587)
Q Consensus 416 ---~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~i~~i~~sp----- 479 (587)
+ .....+....++|++++.+.-| ++++|..+|.+.|.|+|.+..+..... .....++++.|..
T Consensus 72 ~~~gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~ 150 (395)
T PF08596_consen 72 LKEGFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGG 150 (395)
T ss_dssp -SEEEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TT
T ss_pred cccccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCC
Confidence 1 2334455568999999998544 899999999999999999988766322 1233577777763
Q ss_pred CC---CEEEEEECCCeEEEEEcCC----ceeecccceecccccccceEEEE-EcCC---------------------CCE
Q 007855 480 NT---NWLAAQSLDNQILIYSTRE----RFQLNKKKRFAGHIVAGYACQVN-FSPD---------------------GRF 530 (587)
Q Consensus 480 ~g---~~l~~~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~i~~l~-~spd---------------------g~~ 530 (587)
++ -.+++|+..|.+.+|.+.- ++.......... ..+.+..+. |+.+ ..+
T Consensus 151 D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~--~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 151 DGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTN--HDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp SSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE----SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred CcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeecccc--CCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 22 5789999999999998641 122111111101 122332222 2211 113
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC----CCCCEEEEEECCCcEEEc
Q 007855 531 VMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP----LEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp----~~~~~l~s~g~DG~I~iW 586 (587)
+++ ..+..++++...+.+..++.....-.+..+.+.+ ..+..|++-..+|.|+++
T Consensus 229 vVv-vSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 229 VVV-VSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp EEE-E-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred EEE-EcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 333 4456799999988887666553323344455531 145578888899999986
No 357
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.60 E-value=0.039 Score=58.93 Aligned_cols=222 Identities=10% Similarity=0.048 Sum_probs=110.6
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE 417 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~ 417 (587)
...-....|.++|+|+++++++ ||...|+..........- ......|... +.+++-...+.|.++.--...
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~G----~g~~~vw~~~----n~yAv~~~~~~I~I~kn~~~~ 100 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAFG----SGLSFVWSSR----NRYAVLESSSTIKIYKNFKNE 100 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEEE----E-SEEEE-TS----SEEEEE-TTS-EEEEETTEE-
T ss_pred CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCcccccC----ceeEEEEecC----ccEEEEECCCeEEEEEcCccc
Confidence 3445578999999999988854 677888874443332221 1223444442 347777778889996322222
Q ss_pred EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEE
Q 007855 418 ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 418 ~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
....+.. ...+..|-. |..|...+.+ .|.+||+.+...+..+.. .+|..+.|++++.+++..+.+ .+.|++
T Consensus 101 ~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v---~~vk~V~Ws~~g~~val~t~~-~i~il~ 171 (443)
T PF04053_consen 101 VVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV---SAVKYVIWSDDGELVALVTKD-SIYILK 171 (443)
T ss_dssp TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS----E-EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred cceEEcC-CcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec---CCCcEEEEECCCCEEEEEeCC-eEEEEE
Confidence 2222221 122333333 7777777655 899999999999998843 358999999999999999855 577765
Q ss_pred cCCce-------eec-ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC
Q 007855 498 TRERF-------QLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 498 ~~~~~-------~~~-~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~ 569 (587)
..... -+. .+... +.....|.+.+|..+ .++-.+.. +|+. +-.|.. ..+..-..++.=+.+.+
T Consensus 172 ~~~~~~~~~~~~g~e~~f~~~--~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~-~~i~~ld~~~yllgy~~- 242 (443)
T PF04053_consen 172 YNLEAVAAIPEEGVEDAFELI--HEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGET-GIIAHLDKPLYLLGYLP- 242 (443)
T ss_dssp E-HHHHHHBTTTB-GGGEEEE--EEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEE-EEEEE-SS--EEEEEET-
T ss_pred ecchhcccccccCchhceEEE--EEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc-ceEEEcCCceEEEEEEc-
Confidence 43210 000 01111 111244556677655 33333333 5555 334432 22332344566667777
Q ss_pred CCCEEEEEECCCcEEEc
Q 007855 570 EQSKVATCGWDGLIKYW 586 (587)
Q Consensus 570 ~~~~l~s~g~DG~I~iW 586 (587)
..+.|+....|+.|..+
T Consensus 243 ~~~~ly~~Dr~~~v~~~ 259 (443)
T PF04053_consen 243 KENRLYLIDRDGNVISY 259 (443)
T ss_dssp TTTEEEEE-TT--EEEE
T ss_pred cCCEEEEEECCCCEEEE
Confidence 55688888888877653
No 358
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.58 E-value=0.044 Score=53.35 Aligned_cols=209 Identities=15% Similarity=0.134 Sum_probs=122.0
Q ss_pred ceeeEEEecC-CCeEEEEeCCCe-EEEEECCCCcEEEEeecCCcce---EEEEccCCCCCcEEEEEeCC-----CcEEEE
Q 007855 342 AVRDISFCND-GTKFLTASYDKN-IKYWDTETGQVIRTFSTGKIPY---VVKLNPDDDKQNILLAGMSD-----KKIVQW 411 (587)
Q Consensus 342 ~V~~l~fs~d-g~~l~s~s~Dg~-I~vWd~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~~l~sg~~d-----g~I~iw 411 (587)
....|+|+|. ..-++.+-.-|+ ..++|....+.+..+....... --.|++++ .+|++.-.| |.|-+|
T Consensus 69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG---~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDG---RLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCC---cEEEeecCCCCCCCceEEEE
Confidence 3446777774 334444444444 5678888887666654333222 23455544 466665443 789999
Q ss_pred eCCCC-cEEEEEccCCCCeeEEEEecCCCEEEEEEC------------------CCCEEEEECCCCeEEEEeecC---CC
Q 007855 412 DMNTK-EITQEYDQHLGAVNTITFVDNNRRFVTSSD------------------DKSLRVWEFGIPVVIKYISEP---HM 469 (587)
Q Consensus 412 D~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~------------------Dg~I~iwd~~~~~~~~~~~~~---~~ 469 (587)
|.+.+ +.+.++..|.-....+.|.+||+.++.+.. .-++.+.|..++..+.....+ +.
T Consensus 146 d~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~ 225 (366)
T COG3490 146 DAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ 225 (366)
T ss_pred ecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh
Confidence 99865 567778888888899999999999887642 112334443444444333222 45
Q ss_pred cceeEEEEeCCCCEEEEEECCCe-------EEEEEcCCceeecccceec--ccccccceEEEEEcCCCCEEEEEcCC-Cc
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQ-------ILIYSTRERFQLNKKKRFA--GHIVAGYACQVNFSPDGRFVMSGDGE-GK 539 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~-------I~iwd~~~~~~~~~~~~~~--~~~~~~~i~~l~~spdg~~L~sgs~d-G~ 539 (587)
.+|..+...++|..++.+-..|. |-++ ..+..+..+.... -.....+|-+|+.+.+..+++..+-. +.
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~--~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~ 303 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHF--RKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNR 303 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCCCccCCcceeec--cCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCe
Confidence 57888888888876665543321 1111 1111111111000 00123566678888766666655544 45
Q ss_pred EEEEeCCCCeeEEEEe
Q 007855 540 CWFWDWKSCKVFRTLK 555 (587)
Q Consensus 540 I~vwd~~t~~~~~~l~ 555 (587)
..+||..+|..+..-.
T Consensus 304 ~vi~da~tG~vv~~a~ 319 (366)
T COG3490 304 AVIWDAATGAVVSEAA 319 (366)
T ss_pred EEEEEcCCCcEEeccc
Confidence 7899999998876543
No 359
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=97.58 E-value=0.068 Score=52.28 Aligned_cols=198 Identities=11% Similarity=0.063 Sum_probs=120.8
Q ss_pred cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccC-CCCeeEEEEecCCCEEEEEECCCC
Q 007855 373 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQH-LGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 373 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h-~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
+.+.++.+......-.+.... ++.++-+.+.-| .|+.+|+.+++......-. .----.|+.. +++.+..+=.++.
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~-~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~ 111 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD-DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGT 111 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE-TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEECCCCCcccCccEEecC-CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCe
Confidence 445566655555544443311 224566666555 7999999999877654322 2223445555 3455566667889
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
..+||..+.+.+..+..+ ..-..++ .+++.|+.+.....|+++|..+......+........-..+..+.|- +|.
T Consensus 112 ~f~yd~~tl~~~~~~~y~--~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~ 186 (264)
T PF05096_consen 112 GFVYDPNTLKKIGTFPYP--GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGK 186 (264)
T ss_dssp EEEEETTTTEEEEEEE-S--SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTE
T ss_pred EEEEccccceEEEEEecC--CcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCE
Confidence 999999999988888543 3445555 46778888888889999998765554444433332223445556665 676
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEEEec------------C---CCCEEEEEEcCCCCCEEEEE
Q 007855 530 FVMSGDGEGKCWFWDWKSCKVFRTLKC------------H---EGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 530 ~L~sgs~dG~I~vwd~~t~~~~~~l~~------------h---~~~V~~v~~sp~~~~~l~s~ 577 (587)
..|=.-....|...|..+|+....+.. + ....++|+|.|..+.+++||
T Consensus 187 IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 187 IYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 666666777899999999998887642 1 34689999999666667765
No 360
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.57 E-value=0.004 Score=70.01 Aligned_cols=136 Identities=14% Similarity=0.187 Sum_probs=95.4
Q ss_pred eCCCcEEEEeCCCCcEEEEEccCCCC-eeEEEEec-----CCCEEEEEECCCCEEEEECCCCe--EEEEe--ecCCCcce
Q 007855 403 MSDKKIVQWDMNTKEITQEYDQHLGA-VNTITFVD-----NNRRFVTSSDDKSLRVWEFGIPV--VIKYI--SEPHMHSM 472 (587)
Q Consensus 403 ~~dg~I~iwD~~t~~~~~~~~~h~~~-I~~i~~sp-----~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~--~~~~~~~i 472 (587)
.....|+..|+..|+++..+..|... |..++-.. .....++|-.+..|..||.|... ++... .-......
T Consensus 501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~F 580 (794)
T PF08553_consen 501 NNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNF 580 (794)
T ss_pred CCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCc
Confidence 45688999999999999999887654 65554331 23456778888899999998643 22111 11234456
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
.|++-..+| +||+|+.+|.|++||-.. . +.+..+++- ..+|..|+.+.||+||++.+.. .|.|++.
T Consensus 581 s~~aTt~~G-~iavgs~~G~IRLyd~~g-~--~AKT~lp~l--G~pI~~iDvt~DGkwilaTc~t-yLlLi~t 646 (794)
T PF08553_consen 581 SCFATTEDG-YIAVGSNKGDIRLYDRLG-K--RAKTALPGL--GDPIIGIDVTADGKWILATCKT-YLLLIDT 646 (794)
T ss_pred eEEEecCCc-eEEEEeCCCcEEeecccc-h--hhhhcCCCC--CCCeeEEEecCCCcEEEEeecc-eEEEEEE
Confidence 777777665 799999999999999432 1 223334433 5789999999999999877754 6777764
No 361
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.56 E-value=0.042 Score=55.75 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=123.7
Q ss_pred EEecCCC-eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-
Q 007855 347 SFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ- 424 (587)
Q Consensus 347 ~fs~dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~- 424 (587)
.|.++.. ++.+--..+.|.-|+..+++... +............- .. ..|+++. ..+.+++..++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~~~~~~~~d--~~-g~Lv~~~--~g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPGGFSSGALID--AG-GRLIACE--HGVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCCCcccceeec--CC-CeEEEEc--cccEEEeccCCceeEEeccc
Confidence 3555554 34444456778888877664332 22222222222211 11 2233332 3455566655554332211
Q ss_pred ----CCCCeeEEEEecCCCEEEEEEC-----C----CCEEEEECC-CCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC-
Q 007855 425 ----HLGAVNTITFVDNNRRFVTSSD-----D----KSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL- 489 (587)
Q Consensus 425 ----h~~~I~~i~~sp~~~~l~s~s~-----D----g~I~iwd~~-~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~- 489 (587)
.....+.+.+.|+|.+.++... . ..=.||-+. .+...+.+ ..+...-+.|+|+|+++.|+.+..
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~-~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLL-DDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEee-cCcEEecCceEECCCCCEEEEEeCC
Confidence 2245677888899887666544 1 011344444 34444333 234555678999999987777754
Q ss_pred CCeEEEEEcCC--ceeecccceecccccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 007855 490 DNQILIYSTRE--RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 490 dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG-~I~vwd~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
.+.|.-|++.. +..-............+..-.++...+|.+-+++...| .|.+|+.. ++++..+..+...+++++|
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~F 262 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAF 262 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceE
Confidence 48888887752 11111110111111123344477778888776555554 89999987 9999999988777888888
Q ss_pred cCCCCCEEEEEE
Q 007855 567 HPLEQSKVATCG 578 (587)
Q Consensus 567 sp~~~~~l~s~g 578 (587)
--.+.+.|+..+
T Consensus 263 gG~~~~~L~iTs 274 (307)
T COG3386 263 GGPDLNTLYITS 274 (307)
T ss_pred eCCCcCEEEEEe
Confidence 643334444333
No 362
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.54 E-value=0.004 Score=65.00 Aligned_cols=145 Identities=15% Similarity=0.234 Sum_probs=105.3
Q ss_pred CCCeEE-EEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCc----EEEEEeCCCcEEEEeCCCCc--EEEEEc
Q 007855 351 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN----ILLAGMSDKKIVQWDMNTKE--ITQEYD 423 (587)
Q Consensus 351 dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~----~l~sg~~dg~I~iwD~~t~~--~~~~~~ 423 (587)
+.++|+ ++..-..|+-.|++.|+.+..+..+..+..+.+.|+..... --++|-++..|.-||++-.. .+..-+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 444444 45555678888999999999999888877777777654322 24678889999999998432 222222
Q ss_pred cCC----CCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 424 QHL----GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 424 ~h~----~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
+|. ....|++-..+| ++++||.+|.|++||- .+...++...+...+|..+..+.+|++|++.+ +..+.+.++
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 222 334566665555 8999999999999997 66666666667888999999999999988766 666766664
No 363
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.013 Score=63.41 Aligned_cols=141 Identities=9% Similarity=0.079 Sum_probs=92.5
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCee-eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE---
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV--- 374 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~--- 374 (587)
|.--++... +.+++.|+.-|.|++|+- ..+.. +....+-...+..++.+++..++|.|+..|.|.++-+..+.+
T Consensus 36 v~lTc~dst-~~~l~~GsS~G~lyl~~R-~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 36 VKLTCVDAT-EEYLAMGSSAGSVYLYNR-HTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred EEEEEeecC-CceEEEecccceEEEEec-CchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 333344444 889999999999999997 33332 233334556677778888888999999999999998876432
Q ss_pred --EEEeec--CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC----cEEEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 375 --IRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 375 --i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~----~~~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
+..+.. +..+.++.|.++. ..+++|...|+|.+-.+.+. ...+.+....+.|..|... ++..|++..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~---~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~-q~~LLVStl 188 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNG---MKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYL-QSYLLVSTL 188 (726)
T ss_pred eeeccccccCCceEEEEEecccc---cEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecc-cceehHhhh
Confidence 222223 3344556666544 57999999999999888772 1233344456777777776 333444433
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.48 E-value=0.00032 Score=45.60 Aligned_cols=38 Identities=39% Similarity=0.740 Sum_probs=34.6
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEe
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 325 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 325 (587)
+++..+..|...|.+++|++. +.++++++.|+.|++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPD-GKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCC-CCEEEEecCCCeEEEcC
Confidence 467788899999999999998 78999999999999996
No 365
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.46 E-value=0.00021 Score=66.97 Aligned_cols=142 Identities=11% Similarity=0.030 Sum_probs=87.6
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
..+...+.||.|+-++++..+........+... .....-+..+++|+.+|.|.+|................ ...
T Consensus 31 ~~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~---e~i 104 (238)
T KOG2444|consen 31 HLLRATSADGLVRERKVRKHKESCRSERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGE---ESI 104 (238)
T ss_pred hhhccccCCcccccchhhhhhhhhhhhhhhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhccc---ccc
Confidence 345667788899888876543322111111111 22223456799999999999998762211111111111 122
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC-CCEEEEEEcCCCCCEEEEE--ECCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVATC--GWDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s~--g~DG~I~iWD 587 (587)
.+.+.--.++.+..++..+|.|+.|++...+.+.....|. .++..+..+. ....|+.+ |.|..++.||
T Consensus 105 ~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~-sd~~i~~a~~S~d~~~k~W~ 175 (238)
T KOG2444|consen 105 DLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVG-SDEFLKIADTSHDRVLKKWN 175 (238)
T ss_pred eeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEec-CCceEEeeccccchhhhhcc
Confidence 2233344466688999999999999999999888887787 4555555554 45566666 7777777775
No 366
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.39 E-value=0.17 Score=52.67 Aligned_cols=261 Identities=13% Similarity=0.165 Sum_probs=135.4
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE-EEcc-------c---------CCceeeEEEecCCCeEEEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR-TYMG-------H---------SKAVRDISFCNDGTKFLTA 358 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~-------h---------~~~V~~l~fs~dg~~l~s~ 358 (587)
...+....|+|+ |+.++... ++.|.++++ ..+...+ +..+ - -+.-..+.|||||++|+..
T Consensus 42 ~~~~~~~~~sP~-g~~~~~v~-~~nly~~~~-~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~ 118 (353)
T PF00930_consen 42 PPKLQDAKWSPD-GKYIAFVR-DNNLYLRDL-ATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL 118 (353)
T ss_dssp ETTBSEEEE-SS-STEEEEEE-TTEEEEESS-TTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE
T ss_pred ccccccceeecC-CCeeEEEe-cCceEEEEC-CCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEE
Confidence 567899999999 88887776 578999987 4443332 2212 0 1223678899999999987
Q ss_pred eCC-CeEEEEEC---CCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC--CcEEEEeCCCCcEEEE--E---ccCCC
Q 007855 359 SYD-KNIKYWDT---ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQE--Y---DQHLG 427 (587)
Q Consensus 359 s~D-g~I~vWd~---~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwD~~t~~~~~~--~---~~h~~ 427 (587)
..| ..|..+.+ ..... ..+....+... .+|..+ -.+.++|+.+++.... . .....
T Consensus 119 ~~d~~~v~~~~~~~~~~~~~-------~yp~~~~~~YP-------k~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~ 184 (353)
T PF00930_consen 119 RFDEREVPEYPLPDYSPPDS-------QYPEVESIRYP-------KAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDY 184 (353)
T ss_dssp EEE-TTS-EEEEEEESSSTE-------SS-EEEEEE---------BTTS---EEEEEEEESSSTCCCEE---HHHHTSSE
T ss_pred EECCcCCceEEeeccCCccc-------cCCcccccccC-------CCCCcCCceEEEEEECCCCcEEEeeeccccCCCcc
Confidence 654 33333321 11110 01112222110 011111 2456688877765321 1 23445
Q ss_pred CeeEEEEecCCCEEEEE--ECCC---CEEEEECCCCeEEEEeecCCCc---ceeEEEEe-CCC-CEEEEEECCCeEEE--
Q 007855 428 AVNTITFVDNNRRFVTS--SDDK---SLRVWEFGIPVVIKYISEPHMH---SMPSISLH-PNT-NWLAAQSLDNQILI-- 495 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~--s~Dg---~I~iwd~~~~~~~~~~~~~~~~---~i~~i~~s-p~g-~~l~~~s~dg~I~i-- 495 (587)
-+..+.|.+++..|+.. ..+. .+.++|..++............ ....+.+. +++ .+|.....+|.-+|
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 68899999999844444 3332 3667777665433222222222 22345554 554 45555566765444
Q ss_pred EEcCCceeecccceecccccccceE-EEEEcCCCCEEE-EEcCC----CcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC
Q 007855 496 YSTRERFQLNKKKRFAGHIVAGYAC-QVNFSPDGRFVM-SGDGE----GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 496 wd~~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~L~-sgs~d----G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~ 569 (587)
++...+... ....|. -.|. -+.++++++.|+ ++..+ ..|+.-++..+..+..+....+....+.|+|+
T Consensus 265 ~~~~~~~~~---~lT~G~---~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spd 338 (353)
T PF00930_consen 265 YDLDGGKPR---QLTSGD---WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPD 338 (353)
T ss_dssp EETTSSEEE---ESS-SS---S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TT
T ss_pred Eccccccee---ccccCc---eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCC
Confidence 455544311 111121 2232 377888877654 55442 24666677723445566554444368999995
Q ss_pred CCCEEEEEEC
Q 007855 570 EQSKVATCGW 579 (587)
Q Consensus 570 ~~~~l~s~g~ 579 (587)
+..++.+++.
T Consensus 339 g~y~v~~~s~ 348 (353)
T PF00930_consen 339 GKYYVDTYSG 348 (353)
T ss_dssp SSEEEEEEES
T ss_pred CCEEEEEEcC
Confidence 5555666654
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.37 E-value=0.11 Score=52.73 Aligned_cols=217 Identities=13% Similarity=0.193 Sum_probs=125.0
Q ss_pred EEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec--
Q 007855 303 RFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-- 380 (587)
Q Consensus 303 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-- 380 (587)
.|.+..+.++.+--..+.|.-|+. .+++ ...+. +...+.++.....+..|+++.. -+.+++.+++..+..+..
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~-~~g~-~~~~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDP-ETGK-KRVFP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecC-CcCc-eEEEE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 477775557777777888888887 3332 22222 3334455555555556666543 466777766665333321
Q ss_pred -C---CcceEEEEccCCCCCcEEEEEeCC------------CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE
Q 007855 381 -G---KIPYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS 444 (587)
Q Consensus 381 -~---~~~~~~~~~~~~~~~~~l~sg~~d------------g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~ 444 (587)
. ....-..+.+++. +.++... |.|+.+|. .+..+..+..+-..-+.|+|+|+++.|+.+
T Consensus 106 ~~~~~~r~ND~~v~pdG~----~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~a 180 (307)
T COG3386 106 DGLPLNRPNDGVVDPDGR----IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVA 180 (307)
T ss_pred CCCCcCCCCceeEcCCCC----EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEE
Confidence 1 1223445555432 4444333 33555554 566666666667778999999999888777
Q ss_pred ECC-CCEEEEECCC------CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC-eEEEEEcCCceeecccceecccccc
Q 007855 445 SDD-KSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 445 s~D-g~I~iwd~~~------~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
... +.|.-|++.. ...............-.++...+|.+.+++...| .|.+|+.. +..+...... .
T Consensus 181 DT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP-----~ 254 (307)
T COG3386 181 DTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLP-----V 254 (307)
T ss_pred eCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECC-----C
Confidence 554 6788887752 1111222222445667788888898876555554 89999887 5444333221 1
Q ss_pred cceEEEEE-cCCCCEEEEEc
Q 007855 517 GYACQVNF-SPDGRFVMSGD 535 (587)
Q Consensus 517 ~~i~~l~~-spdg~~L~sgs 535 (587)
..+++++| .|+.+.|++.+
T Consensus 255 ~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 255 KRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CCCccceEeCCCcCEEEEEe
Confidence 33445666 34445554433
No 368
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.35 E-value=0.099 Score=58.87 Aligned_cols=280 Identities=14% Similarity=0.168 Sum_probs=142.8
Q ss_pred CCCeEEEEEccC--CCc---EEEEEeCCCeEEEEecCCCCeeeEEE-cc---cCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 296 TKGVSAIRFFPK--YGH---LILSAGMDTKVKIWDVFNSGKCMRTY-MG---HSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 296 ~~~V~~l~~sp~--~g~---~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~---h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
...|.|+.++|- ..+ +++.|..+..+.+--...+...+... .+ -...|.-.+|-.|..+|+++..||.+..
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~ 609 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY 609 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence 357999999975 233 88889887777665543344333222 11 2234555566667889999999999887
Q ss_pred EEC--CCCcEEE--EeecCCcceEE-EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEE-Ee-cC-C
Q 007855 367 WDT--ETGQVIR--TFSTGKIPYVV-KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTIT-FV-DN-N 438 (587)
Q Consensus 367 Wd~--~t~~~i~--~~~~~~~~~~~-~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~-~s-p~-~ 438 (587)
+-+ .+|+.-. ....+..+..+ .|.... ..-+.+.+|.-..+|..+..-....+. ...+..+| |+ +. .
T Consensus 610 fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~---~t~vfa~sdrP~viY~~n~kLv~spls--~kev~~~c~f~s~a~~ 684 (1096)
T KOG1897|consen 610 FVLDINTGQLSDRKKVTLGTQPISLRTFSSKS---RTAVFALSDRPTVIYSSNGKLVYSPLS--LKEVNHMCPFNSDAYP 684 (1096)
T ss_pred EEEEcccceEccccccccCCCCcEEEEEeeCC---ceEEEEeCCCCEEEEecCCcEEEeccc--hHHhhhhcccccccCC
Confidence 654 4444322 22333333333 333222 223334445555555433221111111 11111111 21 11 1
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC--------------CeEEEEEcCCceee
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRERFQL 504 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d--------------g~I~iwd~~~~~~~ 504 (587)
..++++. .+.+++.-++.-..+..-..+.......+++.+....+++.+.- ..++++|-.+...+
T Consensus 685 d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 685 DSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred ceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 2344443 45677766654322221112455667778888755555554432 23566665543322
Q ss_pred cccceecccccccceEEEEEcCC-CCEEEEEcC----------CCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcCCCC
Q 007855 505 NKKKRFAGHIVAGYACQVNFSPD-GRFVMSGDG----------EGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQ 571 (587)
Q Consensus 505 ~~~~~~~~~~~~~~i~~l~~spd-g~~L~sgs~----------dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~ 571 (587)
. ...+......-.++++.|..| +.++++|+. .|+|.+|.+..++.+..... -.+.|.++.-. ++
T Consensus 764 ~-~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f--ng 840 (1096)
T KOG1897|consen 764 S-SHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF--NG 840 (1096)
T ss_pred e-eccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh--CC
Confidence 2 222222223344666778887 778888863 58888888876433333322 23455555433 45
Q ss_pred CEEEEEECCCcEEEc
Q 007855 572 SKVATCGWDGLIKYW 586 (587)
Q Consensus 572 ~~l~s~g~DG~I~iW 586 (587)
++||.-+ ..|++|
T Consensus 841 kllA~In--~~vrLy 853 (1096)
T KOG1897|consen 841 KLLAGIN--QSVRLY 853 (1096)
T ss_pred eEEEecC--cEEEEE
Confidence 5555444 366665
No 369
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=97.35 E-value=0.22 Score=50.34 Aligned_cols=272 Identities=13% Similarity=0.115 Sum_probs=127.4
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc--c---CCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG--H---SKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--h---~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
...+..|.|... .+-+++|. .+.| +...+.++.-..... . .-...+|.|..+ ..+++| ..+ +.+...+
T Consensus 16 ~~~l~dV~F~d~-~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~ivG-~~g-~ll~T~D 88 (302)
T PF14870_consen 16 DKPLLDVAFVDP-NHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIVG-EPG-LLLHTTD 88 (302)
T ss_dssp SS-EEEEEESSS-S-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEEE-ETT-EEEEESS
T ss_pred CCceEEEEEecC-CEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEEc-CCc-eEEEecC
Confidence 447899999855 55666655 4544 333233332222111 1 123667777643 344444 444 4555555
Q ss_pred CCcEEEEeec----CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 371 TGQVIRTFST----GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 371 t~~~i~~~~~----~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
.|+.-..+.. ......+..... ..+...+..|.|+.= ...++ -......-.+.+..+..+++++++++++
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~----~~~~l~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~ 163 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGD----GSAELAGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSS 163 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEET----TEEEEEETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEET
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCC----CcEEEEcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEEC
Confidence 5654444322 122222222221 123333444544332 22222 2223344557889999999999888876
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc-CCceeecccceecccccccceEEEEE
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
.-..+.-||-....-.... ......|..|.|.|++.+.+++ ..|.|++=+. ........ .........-.+..++|
T Consensus 164 ~G~~~~s~~~G~~~w~~~~-r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~-~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 164 RGNFYSSWDPGQTTWQPHN-RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE-PIIPIKTNGYGILDLAY 240 (302)
T ss_dssp TSSEEEEE-TT-SS-EEEE---SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE----B-TTSS--S-EEEEEE
T ss_pred cccEEEEecCCCccceEEc-cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc-ccCCcccCceeeEEEEe
Confidence 6555667886543222111 2356789999999998766654 8888888762 22222211 11111122233788999
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 525 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.+++...++|+. |.| +.....|+.-..-+. -...+..+.|.+ . ..-+..|.+|.|--|
T Consensus 241 ~~~~~~wa~gg~-G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~-~-~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 241 RPPNEIWAVGGS-GTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVN-P-DKGFVLGQDGVLLRY 301 (302)
T ss_dssp SSSS-EEEEEST-T-E-EEESSTTSS-EE-GGGTTSSS---EEEEEE-T-TEEEEE-STTEEEEE
T ss_pred cCCCCEEEEeCC-ccE-EEeCCCCccceECccccCCCCceEEEEEcC-C-CceEEECCCcEEEEe
Confidence 998877776654 433 345566666555543 234578888875 2 466777889988765
No 370
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.34 E-value=0.00077 Score=43.70 Aligned_cols=39 Identities=33% Similarity=0.617 Sum_probs=34.2
Q ss_pred CeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 548 CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 548 ~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++++..+..|...|.++.|++ ...++++++.||.|++||
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 456677788999999999999 568999999999999997
No 371
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=97.29 E-value=0.066 Score=50.68 Aligned_cols=211 Identities=15% Similarity=0.147 Sum_probs=115.0
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeC-CCcEEEEeCCC--CcEEEEEc-----cC
Q 007855 354 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS-DKKIVQWDMNT--KEITQEYD-----QH 425 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~-dg~I~iwD~~t--~~~~~~~~-----~h 425 (587)
++.+--..+.|.-||..+.+..+.-... .+.+-.+.|.......+++++. .-.|.-||-.. .....++. ..
T Consensus 29 Ll~VDi~ag~v~r~D~~qn~v~ra~ie~-p~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~k 107 (310)
T KOG4499|consen 29 LLYVDIEAGEVHRYDIEQNKVYRAKIEG-PPSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRK 107 (310)
T ss_pred EEEEEeccCceehhhhhhhheEEEEEec-CcceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHH
Confidence 4444444567777888876654433222 2222233333333334444443 34556677432 23333321 12
Q ss_pred CCCeeEEEEecCCCEEEEEECC---------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEE-EEECCCeEEE
Q 007855 426 LGAVNTITFVDNNRRFVTSSDD---------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA-AQSLDNQILI 495 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~-~~s~dg~I~i 495 (587)
....+.-..+|+|++++-.-.| |.++.|-....... +. ..-.--..++|+.+.+.+. +-+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~--i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVEL--IW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccCCCcee--ee-hhccCCccccccccCcEEEEEccCceEEee
Confidence 3456667788999885433222 33444443322111 10 0112234677887766554 4456667766
Q ss_pred EE--cCCceeecccceeccccc----ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 496 YS--TRERFQLNKKKRFAGHIV----AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 496 wd--~~~~~~~~~~~~~~~~~~----~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
|| ..++...++...+.-... .-..-.+++..+|.+.++.-..|+|...|..+|+++.+++-....|++|+|--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence 77 555433332222111100 00011245566888888888889999999999999999999999999999964
No 372
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.26 E-value=0.22 Score=56.21 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=153.6
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCC-CCeeeEE--EcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRT--YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~--~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
|.-..|--+ .++|+++..||.+.-+.+.. ++..-.. ..--..++.--.|+..++.-+.|..|+-..+|.....-+.
T Consensus 586 Il~~~~e~d-~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~ 664 (1096)
T KOG1897|consen 586 ILLTTFEGD-IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVY 664 (1096)
T ss_pred eeeEEeecc-ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEE
Confidence 444444444 78999999999998876632 2221111 1123456666677775555555555676777765443334
Q ss_pred EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc--EEEEEccCCCCeeEEEEecCCCEEEEEECC------
Q 007855 376 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDNNRRFVTSSDD------ 447 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~--~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D------ 447 (587)
..+........+.+..+.-.. .++ ....+.+.+.-+..-+ .+++.. -......+++.+....+.+.+.-
T Consensus 665 spls~kev~~~c~f~s~a~~d-~l~-~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~ 741 (1096)
T KOG1897|consen 665 SPLSLKEVNHMCPFNSDAYPD-SLA-SANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAE 741 (1096)
T ss_pred eccchHHhhhhcccccccCCc-eEE-EecCCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchh
Confidence 444444444444444433222 233 3334556665544321 223322 22445566666544444443321
Q ss_pred --------CCEEEEECCCCeEEEEeecCCC---cceeEEEEeCC-CCEEEEEEC----------CCeEEEEEcCCceeec
Q 007855 448 --------KSLRVWEFGIPVVIKYISEPHM---HSMPSISLHPN-TNWLAAQSL----------DNQILIYSTRERFQLN 505 (587)
Q Consensus 448 --------g~I~iwd~~~~~~~~~~~~~~~---~~i~~i~~sp~-g~~l~~~s~----------dg~I~iwd~~~~~~~~ 505 (587)
..++++|-++...+........ .++.++.|..+ +.++++|+. .|.|.+|.......+
T Consensus 742 ~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L- 820 (1096)
T KOG1897|consen 742 YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL- 820 (1096)
T ss_pred hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce-
Confidence 1367777776665544332222 23455557776 778888763 478888877653222
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.....+...+.+.++.. -+|++||.- +..|++|+|.+.+.++.-..|..++..+...- .+..++.|..-+.|.+
T Consensus 821 --~~v~e~~v~Gav~aL~~-fngkllA~I--n~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v-~gdeI~VgDlm~Sitl 894 (1096)
T KOG1897|consen 821 --ELVAETVVKGAVYALVE-FNGKLLAGI--NQSVRLYEWTTERELRIECNISNPIIALDLQV-KGDEIAVGDLMRSITL 894 (1096)
T ss_pred --eeeeeeeeccceeehhh-hCCeEEEec--CcEEEEEEccccceehhhhcccCCeEEEEEEe-cCcEEEEeeccceEEE
Confidence 33333333444444332 257777654 44799999999877776667777787777766 6667777776655543
No 373
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0014 Score=69.75 Aligned_cols=79 Identities=22% Similarity=0.266 Sum_probs=71.2
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCcee-eEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVR-DISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~-~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
-.|.-+.|+|. -.++|.+..+|.|.+..+ + .+.+.++.-|...++ +++|.|||+.|+.|-.||+|++.|++++..+
T Consensus 21 ~~i~~~ewnP~-~dLiA~~t~~gelli~R~-n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 21 INIKRIEWNPK-MDLIATRTEKGELLIHRL-N-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred cceEEEEEcCc-cchhheeccCCcEEEEEe-c-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 45888999999 899999999999999998 3 777888887877787 9999999999999999999999999999888
Q ss_pred EEe
Q 007855 376 RTF 378 (587)
Q Consensus 376 ~~~ 378 (587)
..+
T Consensus 98 ~~~ 100 (665)
T KOG4640|consen 98 VSF 100 (665)
T ss_pred ecc
Confidence 773
No 374
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.25 E-value=0.076 Score=52.07 Aligned_cols=197 Identities=15% Similarity=0.241 Sum_probs=113.1
Q ss_pred ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC-CCCeeEEEEecCCCEEEEEECCCCEEEEECCCC----
Q 007855 384 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP---- 458 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h-~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~---- 458 (587)
...+++.|+ ...++++....+.|..+++ +|++++.+.-. .+..-.|++..++.++++.-.++.+.++++...
T Consensus 24 ~SGLTy~pd--~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~ 100 (248)
T PF06977_consen 24 LSGLTYNPD--TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSL 100 (248)
T ss_dssp EEEEEEETT--TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT-
T ss_pred ccccEEcCC--CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEecccccc
Confidence 455666664 3468888888999999997 47787776543 356888999877766665556889999988321
Q ss_pred --eEEEEee--c--CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC---ceeec--ccceec-ccccccceEEEEEcC
Q 007855 459 --VVIKYIS--E--PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE---RFQLN--KKKRFA-GHIVAGYACQVNFSP 526 (587)
Q Consensus 459 --~~~~~~~--~--~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~---~~~~~--~~~~~~-~~~~~~~i~~l~~sp 526 (587)
.....+. . .....+-.++|++.++.|+++....-..+|.+.. ...+. ....+. .......+..++++|
T Consensus 101 ~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p 180 (248)
T PF06977_consen 101 DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDP 180 (248)
T ss_dssp -EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEET
T ss_pred chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcC
Confidence 1111221 1 2445689999999988888887777777777653 11111 001111 111123356788988
Q ss_pred C-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCC---------CCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 527 D-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE---------GVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 527 d-g~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~---------~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
. |.+++..+....|..+| .+|+.+..+.-.. ..--+|+|.+ ++. |+..+.-+...++
T Consensus 181 ~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~-~G~-LYIvsEpNlfy~f 247 (248)
T PF06977_consen 181 RTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP-DGN-LYIVSEPNLFYRF 247 (248)
T ss_dssp TTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T-T---EEEEETTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC-CCC-EEEEcCCceEEEe
Confidence 5 56677777888899999 6787776665332 2467899998 554 5555565554443
No 375
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.21 E-value=0.029 Score=47.09 Aligned_cols=104 Identities=14% Similarity=0.205 Sum_probs=74.4
Q ss_pred eEEEEEcc---CCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 299 VSAIRFFP---KYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 299 V~~l~~sp---~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
|++|+++. ++.+-|+.||.|..|++|+- ...+..+.. ...|++++-... ..|+.+..+|+|-+|+- .+.+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~---~e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~Rl 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG---DEIVAEITE-TDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRL 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC---CcEEEEEec-ccceEEEEEcCC-CEEEEEecCCEEEEEeC--ccee
Confidence 67777765 33478999999999999974 456666653 456777777655 57999999999999975 4556
Q ss_pred EEeecCCcceEEEEc-cCCCCCcEEEEEeCCCcEE
Q 007855 376 RTFSTGKIPYVVKLN-PDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~-~~~~~~~~l~sg~~dg~I~ 409 (587)
...+..+.+.++.+. .+.+...-|++|-++|.|-
T Consensus 75 WRiKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 WRIKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 666666666555443 3444456799999998874
No 376
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.18 E-value=0.015 Score=60.84 Aligned_cols=141 Identities=14% Similarity=0.225 Sum_probs=97.6
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-------EEEEEECCCCEEEEECCCCeE-EEEeecC-
Q 007855 397 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-------RFVTSSDDKSLRVWEFGIPVV-IKYISEP- 467 (587)
Q Consensus 397 ~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-------~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~- 467 (587)
-+|..+.....|+-.|+..|+++.++.-+.. |+-+.+.|+.+ .-++|-.+..|+-||.+.... .......
T Consensus 347 lil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~k 425 (644)
T KOG2395|consen 347 LILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSK 425 (644)
T ss_pred eEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecc
Confidence 4566677778999999999999999987766 77777777543 235677788999999874322 1111111
Q ss_pred ---CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 468 ---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 468 ---~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
......|++-..+| ++++||.+|.|++||-. +.+ .+..+++- ...|..|..+.+|++|++.+.. .|.+.+
T Consensus 426 qy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri-~~~--AKTAlPgL--G~~I~hVdvtadGKwil~Tc~t-yLlLi~ 498 (644)
T KOG2395|consen 426 QYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI-GRR--AKTALPGL--GDAIKHVDVTADGKWILATCKT-YLLLID 498 (644)
T ss_pred ccccccccceeeecCCc-eEEEeecCCcEEeehhh-hhh--hhhccccc--CCceeeEEeeccCcEEEEeccc-EEEEEE
Confidence 22335555555444 89999999999999962 222 23334444 5678889999999999877654 666666
Q ss_pred C
Q 007855 545 W 545 (587)
Q Consensus 545 ~ 545 (587)
+
T Consensus 499 t 499 (644)
T KOG2395|consen 499 T 499 (644)
T ss_pred E
Confidence 4
No 377
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.17 E-value=0.28 Score=52.27 Aligned_cols=230 Identities=11% Similarity=0.093 Sum_probs=117.8
Q ss_pred eeeEEEecCCCeEEEE-eCCC----eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC----------Cc
Q 007855 343 VRDISFCNDGTKFLTA-SYDK----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD----------KK 407 (587)
Q Consensus 343 V~~l~fs~dg~~l~s~-s~Dg----~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d----------g~ 407 (587)
+..+.++|+|++|+.+ +..| .|+++|+.+|+.+...-.......+.|..++. .++++...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~--~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGK--GFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSS--EEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCC--EEEEEEeCcccccccCCCCcE
Confidence 4467889999988855 3333 59999999998775432222222367766543 455554333 23
Q ss_pred EEEEeCCCCcE--EEEEccCCCC--eeEEEEecCCCEEEEEECCC----CEEEEECCCC----eEEEEeecCCCcceeEE
Q 007855 408 IVQWDMNTKEI--TQEYDQHLGA--VNTITFVDNNRRFVTSSDDK----SLRVWEFGIP----VVIKYISEPHMHSMPSI 475 (587)
Q Consensus 408 I~iwD~~t~~~--~~~~~~h~~~--I~~i~~sp~~~~l~s~s~Dg----~I~iwd~~~~----~~~~~~~~~~~~~i~~i 475 (587)
|+.|.+.+... ...+...... ...+..++++++|+..+..+ .|.+.++... .....+..........+
T Consensus 204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v 283 (414)
T PF02897_consen 204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYV 283 (414)
T ss_dssp EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEE
T ss_pred EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEE
Confidence 78888877642 2444443332 66888899999977654332 4777888764 23333332222222333
Q ss_pred EEeCCCCEEEEEE---CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE-EEcCCC--cEEEEeCCCCe
Q 007855 476 SLHPNTNWLAAQS---LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEG--KCWFWDWKSCK 549 (587)
Q Consensus 476 ~~sp~g~~l~~~s---~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~-sgs~dG--~I~vwd~~t~~ 549 (587)
... ++.+++... ..+.|...++...........+..+.....+..+.. .+.+|+ ....++ .|+++++..+.
T Consensus 284 ~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~ 360 (414)
T PF02897_consen 284 DHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGK 360 (414)
T ss_dssp EEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TE
T ss_pred Ecc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCc
Confidence 333 444444332 236677777766542111112333322223444443 344444 444444 58999998455
Q ss_pred eEEEEecC-CCCEEEEEEcCCCCCEEEEE
Q 007855 550 VFRTLKCH-EGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 550 ~~~~l~~h-~~~V~~v~~sp~~~~~l~s~ 577 (587)
....+... .+.|..+...+....+.++.
T Consensus 361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ 389 (414)
T PF02897_consen 361 ESREIPLPEAGSVSGVSGDFDSDELRFSY 389 (414)
T ss_dssp EEEEEESSSSSEEEEEES-TT-SEEEEEE
T ss_pred EEeeecCCcceEEeccCCCCCCCEEEEEE
Confidence 55555433 33455555555334344443
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.10 E-value=0.0011 Score=62.33 Aligned_cols=143 Identities=13% Similarity=0.155 Sum_probs=87.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEc
Q 007855 311 LILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 390 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~ 390 (587)
+|..-+.||.|+-+++.......+.-.-|...-..+ .-+..+++|+.+|.|.+|...-..............+.+..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~---~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~I 108 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVV---TASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGI 108 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeec---ccCceEEeecccceEEEecCCccchHHHhhhcccccceecc
Confidence 444556788888887732222222222222221112 23457899999999999988632222222222233345556
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-CCeeEEEEecCCCEEEEE--ECCCCEEEEECC
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDNNRRFVTS--SDDKSLRVWEFG 456 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-~~I~~i~~sp~~~~l~s~--s~Dg~I~iwd~~ 456 (587)
|......+.++++.+|.|+.|++.-++.+....+|. .++..+..+..++.+.++ |.|..++.|++.
T Consensus 109 p~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 109 PNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 666666799999999999999999888877777776 455555555555555555 566666666654
No 379
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.005 Score=69.33 Aligned_cols=109 Identities=16% Similarity=0.228 Sum_probs=74.6
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
.++.+.+.- +-.++.|+..|.|...|+..+-.....-..-..+|++++|+.+|..++.|-.+|.|.+||+..++.++
T Consensus 90 ~~v~s~a~~---~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~ 166 (1206)
T KOG2079|consen 90 AGVISSAIV---VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILK 166 (1206)
T ss_pred cceeeeeee---eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCccee
Confidence 344444442 55788889899999988822212222222346789999999999999999999999999999999988
Q ss_pred EeecCCcce--EEEEccCCCCCcEEEEEeCCCcEE
Q 007855 377 TFSTGKIPY--VVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 377 ~~~~~~~~~--~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
.+..+..+. ++.....+ +...++++...|.+.
T Consensus 167 ~i~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gsf~ 200 (1206)
T KOG2079|consen 167 VITEHGAPVTGVIFVGRTS-QNSKLLTSDTGGSFW 200 (1206)
T ss_pred eeeecCCccceEEEEEEeC-CCcEEEEccCCCceE
Confidence 887554433 22222222 234678887777643
No 380
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.99 E-value=0.36 Score=48.13 Aligned_cols=218 Identities=13% Similarity=0.105 Sum_probs=113.6
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-------
Q 007855 350 NDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY------- 422 (587)
Q Consensus 350 ~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~------- 422 (587)
..++.|+.|..+| |.++++..............+..+...+.-. ++++- .|+.|.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~---~llvL-sd~~l~~~~L~~l~~~~~~~~~~~~~ 79 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELN---LLLVL-SDGQLYVYDLDSLEPVSTSAPLAFPK 79 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccC---EEEEE-cCCccEEEEchhhccccccccccccc
Confidence 3577899999888 8999983333222222222244555555332 33333 4599999998765433311
Q ss_pred -------ccCCCCeeEEE--EecCCCEEEEEECCCCEEEEECCCC-----eEEEEeecCCCcceeEEEEeCCCCEEEEEE
Q 007855 423 -------DQHLGAVNTIT--FVDNNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 423 -------~~h~~~I~~i~--~sp~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s 488 (587)
......+...+ -...+...++....+.|.+|.+... ...+.+. ....+.+++|. ++.|+++.
T Consensus 80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~~i~v~~ 155 (275)
T PF00780_consen 80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS--LPDPPSSIAFL--GNKICVGT 155 (275)
T ss_pred cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE--cCCCcEEEEEe--CCEEEEEe
Confidence 11223344444 1133444444555568999888653 3455554 34678888888 56777777
Q ss_pred CCCeEEEEEcCCceeecccceeccc--------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE--EEecCC
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGH--------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLKCHE 558 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~--------~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~--~l~~h~ 558 (587)
.++ ..+.|+.++...... ..... .....+..+.. +++.+|++.+ ..-.+.|. .|+... .+.=.
T Consensus 156 ~~~-f~~idl~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~~--~~g~fv~~-~G~~~r~~~i~W~- 228 (275)
T PF00780_consen 156 SKG-FYLIDLNTGSPSELL-DPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCYD--NIGVFVNK-NGEPSRKSTIQWS- 228 (275)
T ss_pred CCc-eEEEecCCCCceEEe-CccCCcchhhhcccCCCceEEEEe-CCceEEEEec--ceEEEEcC-CCCcCcccEEEcC-
Confidence 544 778888754332111 11110 01112222333 3456776543 23334443 443332 22222
Q ss_pred CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 559 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 559 ~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..+.++++.. .+|+..+.+ .|-||+
T Consensus 229 ~~p~~~~~~~---pyli~~~~~-~iEV~~ 253 (275)
T PF00780_consen 229 SAPQSVAYSS---PYLIAFSSN-SIEVRS 253 (275)
T ss_pred CchhEEEEEC---CEEEEECCC-EEEEEE
Confidence 2345555543 267776654 487774
No 381
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.97 E-value=0.061 Score=45.22 Aligned_cols=100 Identities=12% Similarity=0.202 Sum_probs=70.2
Q ss_pred eeeEEEec---CC-CeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE
Q 007855 343 VRDISFCN---DG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418 (587)
Q Consensus 343 V~~l~fs~---dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~ 418 (587)
|++|++.. +| +.|++||.|..|++|+- ...+..+.....+..+.-... ..|+.+..+|+|-+|+-.. .
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~----~~F~Y~l~NGTVGvY~~~~--R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKG--DEIVAEITETDKVTSLCSLGG----GRFAYALANGTVGVYDRSQ--R 73 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeC--CcEEEEEecccceEEEEEcCC----CEEEEEecCCEEEEEeCcc--e
Confidence 66777765 22 58999999999999975 477778877777666665543 3599999999999997633 2
Q ss_pred EEEEccCCCCeeEEEEecCC----CEEEEEECCCCEE
Q 007855 419 TQEYDQHLGAVNTITFVDNN----RRFVTSSDDKSLR 451 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~----~~l~s~s~Dg~I~ 451 (587)
+...+. ...++++.+.+-. ..|++|-.+|.|-
T Consensus 74 lWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 74 LWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333332 2347777766433 3688888888764
No 382
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.96 E-value=0.41 Score=46.94 Aligned_cols=198 Identities=13% Similarity=0.133 Sum_probs=117.6
Q ss_pred eeEEEccc-CCceeeEEEecCCCeEEEEeCCC--eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcE
Q 007855 332 CMRTYMGH-SKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKI 408 (587)
Q Consensus 332 ~~~~~~~h-~~~V~~l~fs~dg~~l~s~s~Dg--~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I 408 (587)
.+.++... ..-...+.|..+|.++-+.+.-| .|+.+|+.+++.+...........--+...++ .++...-.++..
T Consensus 35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~ 112 (264)
T PF05096_consen 35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTG 112 (264)
T ss_dssp EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEE
T ss_pred EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeE
Confidence 34455422 33456788877888888887765 79999999999888777655443222222222 466666778999
Q ss_pred EEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC-C---cceeEEEEeCCCCEE
Q 007855 409 VQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTNWL 484 (587)
Q Consensus 409 ~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~---~~i~~i~~sp~g~~l 484 (587)
.+||..+.+.+.++. ..+.-..|+ .++..|+.+.....|+++|..+....+.+.-.. . ..+.-+.+. +|...
T Consensus 113 f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy 188 (264)
T PF05096_consen 113 FVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY 188 (264)
T ss_dssp EEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred EEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence 999999999888875 345666777 457778887777889999988877666654321 1 234456665 55555
Q ss_pred EEEECCCeEEEEEcCCceeecccce--e--------cccccccceEEEEEcCCCCEEEEEc
Q 007855 485 AAQSLDNQILIYSTRERFQLNKKKR--F--------AGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 485 ~~~s~dg~I~iwd~~~~~~~~~~~~--~--------~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
|=.=....|...|..++........ + ..+......+.|++.|....|+..+
T Consensus 189 ANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 189 ANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 5555566777777777654432110 0 0111135577899988766554433
No 383
>PHA02713 hypothetical protein; Provisional
Probab=96.94 E-value=0.13 Score=57.01 Aligned_cols=198 Identities=9% Similarity=0.038 Sum_probs=99.4
Q ss_pred CCCeEEEEeCC------CeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCC-----cEEEEeCCCCc
Q 007855 351 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKE 417 (587)
Q Consensus 351 dg~~l~s~s~D------g~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iwD~~t~~ 417 (587)
++..++.|+.+ ..+..||..++.....-... .....++. . ++.+.+.|+.++ .+..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~---~g~IYviGG~~~~~~~~sve~Ydp~~~~ 378 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-I---DDTIYAIGGQNGTNVERTIECYTMGDDK 378 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-E---CCEEEEECCcCCCCCCceEEEEECCCCe
Confidence 56677777754 34778888777543222111 11112221 1 235777777654 47889988765
Q ss_pred EEE--EEccCCCCeeEEEEecCCCEEEEEECCC-----------------------CEEEEECCCCeEEEEeecCCCcce
Q 007855 418 ITQ--EYDQHLGAVNTITFVDNNRRFVTSSDDK-----------------------SLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 418 ~~~--~~~~h~~~I~~i~~sp~~~~l~s~s~Dg-----------------------~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
-.. .+.........+ .-++...+.|+.++ .|..||..+..-...-..+....-
T Consensus 379 W~~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~ 456 (557)
T PHA02713 379 WKMLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIR 456 (557)
T ss_pred EEECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCccccc
Confidence 332 111111111122 22677778787653 467788766543322111111111
Q ss_pred eEEEEeCCCCEEEEEECC------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC--cEEEEe
Q 007855 473 PSISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWD 544 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG--~I~vwd 544 (587)
.+++. -+++..++|+.+ ..+..||..+.........+.... .....+.+ +|++.++|+.+| .+..||
T Consensus 457 ~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r--~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 457 PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL--SALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--ccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 22332 256666666643 246778877511222222222221 11111222 678888998888 677888
Q ss_pred CCCCeeEEEEecCCC
Q 007855 545 WKSCKVFRTLKCHEG 559 (587)
Q Consensus 545 ~~t~~~~~~l~~h~~ 559 (587)
..+.+-......|..
T Consensus 532 ~~~~~W~~~~~~~~~ 546 (557)
T PHA02713 532 VYTYEWNHICHQHSN 546 (557)
T ss_pred cccccccchhhhcCC
Confidence 777654443344443
No 384
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.90 E-value=0.049 Score=57.93 Aligned_cols=186 Identities=16% Similarity=0.165 Sum_probs=106.4
Q ss_pred CCCCeEEEEEccCCCcEEEEE---eCC-CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe-CCCe--EEEE
Q 007855 295 HTKGVSAIRFFPKYGHLILSA---GMD-TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKN--IKYW 367 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sg---s~D-g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~--I~vW 367 (587)
-...+..-+|+|+ +..++-. ... ..+.++++ ..++....+. ..+.-..-+|+|||++|+.++ .||. |.+.
T Consensus 191 ~~~~~~~p~ws~~-~~~~~y~~f~~~~~~~i~~~~l-~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 191 SGSLILTPAWSPD-GKKLAYVSFELGGCPRIYYLDL-NTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred cCcceeccccCcC-CCceEEEEEecCCCceEEEEec-cCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEE
Confidence 3445666778888 4443322 222 46899998 4544333332 233344678999999887554 4554 5566
Q ss_pred ECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCc--EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE
Q 007855 368 DTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS 444 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~--I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~ 444 (587)
|+.++...+ +..... ...-.|+|++ ..++++.+..|. |.++++..+.. ..+....+.-..-.|+|+|++|+..
T Consensus 268 dl~~~~~~~-Lt~~~gi~~~Ps~spdG--~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~ 343 (425)
T COG0823 268 DLDGKNLPR-LTNGFGINTSPSWSPDG--SKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFE 343 (425)
T ss_pred cCCCCccee-cccCCccccCccCCCCC--CEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEE
Confidence 877777443 333222 2233455544 356666666664 56666666654 3333333333478899999999888
Q ss_pred ECC-CC--EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 445 SDD-KS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 445 s~D-g~--I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
+.. |. |.+.|+.....+..+ ........-++.+++..+...+.
T Consensus 344 ~~~~g~~~i~~~~~~~~~~~~~l--t~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 344 SSSGGQWDIDKNDLASGGKIRIL--TSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred eccCCceeeEEeccCCCCcEEEc--cccccCCCCCcCCCCceEEEecc
Confidence 753 33 666666554433333 23333445567778777665543
No 385
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=96.83 E-value=0.38 Score=55.02 Aligned_cols=236 Identities=13% Similarity=0.160 Sum_probs=120.9
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC--------ceeeEEEec----------------CCCeEEEEeCCCeE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK--------AVRDISFCN----------------DGTKFLTASYDKNI 364 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~--------~V~~l~fs~----------------dg~~l~s~s~Dg~I 364 (587)
+..|+.++.++.|.-.|. .+++.+..+..... ..+.+++.. .+..++.++.|+.|
T Consensus 194 gg~lYv~t~~~~V~ALDa-~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDA-ATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 456777777888888887 67777776653221 122333321 34578889999999
Q ss_pred EEEECCCCcEEEEeecCCcce-------------EEEEccCCCCCcEEEEEeC----------CCcEEEEeCCCCcEEEE
Q 007855 365 KYWDTETGQVIRTFSTGKIPY-------------VVKLNPDDDKQNILLAGMS----------DKKIVQWDMNTKEITQE 421 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~l~sg~~----------dg~I~iwD~~t~~~~~~ 421 (587)
.-.|.++|+.+..|....... .....|-- ....+++|+. +|.|+-+|.++|+++-.
T Consensus 273 iALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V-~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~ 351 (764)
T TIGR03074 273 IALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLV-AGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWA 351 (764)
T ss_pred EEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEE-ECCEEEEEecccccccccCCCcEEEEEECCCCcEeeE
Confidence 999999999998775432210 01111110 1235666643 68899999999999887
Q ss_pred EccCCCCeeEEEEecCCCEEEEEECCC-CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 422 YDQHLGAVNTITFVDNNRRFVTSSDDK-SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 422 ~~~h~~~I~~i~~sp~~~~l~s~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
+..-....+.. .+.+.....++... ....+|...+....-. ....+ .+....+.....-..+.|.-.|+.+
T Consensus 352 ~~~g~p~~~~~--~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--Gn~~p----d~~g~~r~~~~n~y~~slvALD~~T 423 (764)
T TIGR03074 352 WDPGNPDPTAP--PAPGETYTRNTPNSWSVASYDEKLGLVYLPM--GNQTP----DQWGGDRTPADEKYSSSLVALDATT 423 (764)
T ss_pred EecCCCCcccC--CCCCCEeccCCCCccCceEEcCCCCeEEEeC--CCccc----cccCCccccCcccccceEEEEeCCC
Confidence 75311111111 11233222222211 2333444433332211 11000 0000000000011134455556655
Q ss_pred ceeecccceecc-----cccccceEEEEEcC-CCC---EEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 501 RFQLNKKKRFAG-----HIVAGYACQVNFSP-DGR---FVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 501 ~~~~~~~~~~~~-----~~~~~~i~~l~~sp-dg~---~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
++..-..+.... ......+ -+.+.. +|+ .|+.++.+|.++++|.++|+.+...+
T Consensus 424 Gk~~W~~Q~~~hD~WD~D~~~~p~-L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 424 GKERWVFQTVHHDLWDMDVPAQPS-LVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred CceEEEecccCCccccccccCCce-EEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 543322222110 0001111 123333 563 78999999999999999999887653
No 386
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.69 E-value=0.76 Score=48.49 Aligned_cols=42 Identities=24% Similarity=0.272 Sum_probs=37.2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 559 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~ 559 (587)
.+.+++.+|.+++.++.++-|+|.++|+.++..++.+++..+
T Consensus 309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd 350 (415)
T PF14655_consen 309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD 350 (415)
T ss_pred eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence 366799999999999999999999999999998888887665
No 387
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0079 Score=64.15 Aligned_cols=94 Identities=6% Similarity=0.010 Sum_probs=76.3
Q ss_pred CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCee-EEEEecCCCEEEEEECCCCEEEEECCCCeE
Q 007855 382 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN-TITFVDNNRRFVTSSDDKSLRVWEFGIPVV 460 (587)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~-~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 460 (587)
.....+.|+|.- .+++.+..+|.|.+..++ .+.+.++.-|...++ +++|.|+|+.|++|-.||+|++.|..++..
T Consensus 21 ~~i~~~ewnP~~---dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 21 INIKRIEWNPKM---DLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cceEEEEEcCcc---chhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence 344556666654 489999999999999998 777788876777777 999999999999999999999999999888
Q ss_pred EEEeecCCCcceeEEEEeC
Q 007855 461 IKYISEPHMHSMPSISLHP 479 (587)
Q Consensus 461 ~~~~~~~~~~~i~~i~~sp 479 (587)
+..........|.++.|.+
T Consensus 97 l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 97 LVSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeccccccccchheeeccc
Confidence 7764444556778888864
No 388
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.66 E-value=0.19 Score=55.84 Aligned_cols=189 Identities=8% Similarity=0.060 Sum_probs=103.0
Q ss_pred ccCCceeeEEEecCCCeEEEEe------CCC--eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEE-------
Q 007855 338 GHSKAVRDISFCNDGTKFLTAS------YDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG------- 402 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s------~Dg--~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg------- 402 (587)
+....+.+.+++|+|+.++... .|. .|.+++.. +.. ..+..+.....-.|++++. .+.+.
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g~~~t~PsWspDG~---~lw~v~dg~~~~ 421 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEGHSLTRPSWSLDAD---AVWVVVDGNTVV 421 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecCCCCCCceECCCCC---ceEEEecCcceE
Confidence 3335688999999999887665 243 45555542 222 3333333345556666533 12222
Q ss_pred -----eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEE---EECCCCe-EE---EEeecCCCc
Q 007855 403 -----MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRV---WEFGIPV-VI---KYISEPHMH 470 (587)
Q Consensus 403 -----~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~i---wd~~~~~-~~---~~~~~~~~~ 470 (587)
...+.+.+.++..+.... ...+.|..+.|+|+|.+++... ++.|.+ -....+. .+ ..+......
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~ 497 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGD 497 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCC
Confidence 123455555666554433 3356799999999999988876 467776 3333333 11 112222333
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEE--cCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYS--TRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
.+..+.|..++.++ ++..++...+|. +...... .+.+......+..|+-++. -|+..+.+|.+.+
T Consensus 498 ~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~----~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~l 564 (591)
T PRK13616 498 TAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSD----ALPSRNLSAPVVAVAASPS--TVYVTDARAVLQL 564 (591)
T ss_pred ccccceEecCCEEE-EEecCCCCceEEEecCCcccc----ccCCCCccCceEEEecCCc--eEEEEcCCceEEe
Confidence 46789999988855 555555444554 4322111 1122212344555666653 4556666664443
No 389
>PHA02713 hypothetical protein; Provisional
Probab=96.61 E-value=0.17 Score=56.11 Aligned_cols=181 Identities=10% Similarity=0.056 Sum_probs=88.8
Q ss_pred cEEEEEeCC------CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC-----CEEEEECCCCeEEEEee
Q 007855 397 NILLAGMSD------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK-----SLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 397 ~~l~sg~~d------g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~ 465 (587)
.++++|+.+ ..+..||+.+......-.-....-......-+++..+.|+.++ ++..||..+..-...-.
T Consensus 305 ~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~ 384 (557)
T PHA02713 305 EIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPD 384 (557)
T ss_pred EEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCC
Confidence 567777753 3477889887753221111111111112223677888888764 47889987664332211
Q ss_pred cCCCcceeEEEEeCCCCEEEEEECC-----------------------CeEEEEEcCCceeecccceecccccccceEEE
Q 007855 466 EPHMHSMPSISLHPNTNWLAAQSLD-----------------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~g~~l~~~s~d-----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
.+....-.+++ .-++...+.|+.+ ..+..||..+. .......+.... .... +
T Consensus 385 mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td-~W~~v~~m~~~r--~~~~-~ 459 (557)
T PHA02713 385 MPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNN-IWETLPNFWTGT--IRPG-V 459 (557)
T ss_pred CCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCC-eEeecCCCCccc--ccCc-E
Confidence 11111111222 2256777777654 24677876653 121111111110 1111 1
Q ss_pred EEcCCCCEEEEEcCCC------cEEEEeCCC-C--eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCC--cEEEc
Q 007855 523 NFSPDGRFVMSGDGEG------KCWFWDWKS-C--KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG--LIKYW 586 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG------~I~vwd~~t-~--~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG--~I~iW 586 (587)
..-+|++.+.|+.++ .+..||..+ . ..+..+......+..+.+ ++.+.++||.|| .+-.|
T Consensus 460 -~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~~iyv~Gg~~~~~~~e~y 530 (557)
T PHA02713 460 -VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DNTIMMLHCYESYMLQDTF 530 (557)
T ss_pred -EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CCEEEEEeeecceeehhhc
Confidence 122566666676542 367898876 3 333444333333222333 667888999888 44444
No 390
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.54 E-value=0.3 Score=54.15 Aligned_cols=229 Identities=13% Similarity=0.125 Sum_probs=116.3
Q ss_pred CcEEEEEeCC------CeEEEEecCCCCeeeEEE-cccCCceeeEEEecCCCeEEEEeCC------CeEEEEECCCCcEE
Q 007855 309 GHLILSAGMD------TKVKIWDVFNSGKCMRTY-MGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQVI 375 (587)
Q Consensus 309 g~~L~sgs~D------g~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fs~dg~~l~s~s~D------g~I~vWd~~t~~~i 375 (587)
+.+++.||.+ ..|..+|. ..+.....- ..+...-.++++. ++...++|+.| .++-.||..+++-.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~-~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~ 362 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDP-KTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT 362 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecC-CcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence 6677777777 35778887 333222111 1122333444444 45788888888 35778888887744
Q ss_pred EEeecCCcceEEEEccCCCCCcEEEEEeCCC-----cEEEEeCCCCcEEEEEccCCCCeeEE-EEecCCCEEEEEECCC-
Q 007855 376 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEITQEYDQHLGAVNTI-TFVDNNRRFVTSSDDK- 448 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iwD~~t~~~~~~~~~h~~~I~~i-~~sp~~~~l~s~s~Dg- 448 (587)
..-.............. .+.+.++|+.|| .|-.||..+.+....-.-.. ...+. ...-++...++|+.++
T Consensus 363 ~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~ 439 (571)
T KOG4441|consen 363 PVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS 439 (571)
T ss_pred ccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence 42222222111222221 236788888886 47778887764322211111 11111 1223677888888654
Q ss_pred -----CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCe-----EEEEEcCCceeecccceecccccccc
Q 007855 449 -----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-----ILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 449 -----~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~-----I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
++..||..+..-...-.......-..++. -++.+.++|+.|+. |..||..+.. ...............
T Consensus 440 ~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~-W~~v~~m~~~rs~~g 517 (571)
T KOG4441|consen 440 SNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQ-WTMVAPMTSPRSAVG 517 (571)
T ss_pred ccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCc-eeEcccCcccccccc
Confidence 46778877655433221111111222332 26777778877763 6677765532 111111111111111
Q ss_pred eEEEEEcCCCCEEEEEcCCCc-----EEEEeCCCC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSC 548 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~-----I~vwd~~t~ 548 (587)
+ ..-++...++|+.+|. |..||..+.
T Consensus 518 ---~-~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 518 ---V-VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ---E-EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 1 1125666777877763 666665544
No 391
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.51 E-value=0.11 Score=57.65 Aligned_cols=175 Identities=17% Similarity=0.141 Sum_probs=93.2
Q ss_pred CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE------CCC--CEEEEECCCCeEEEEeecCCCcceeEEE
Q 007855 405 DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS------DDK--SLRVWEFGIPVVIKYISEPHMHSMPSIS 476 (587)
Q Consensus 405 dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s------~Dg--~I~iwd~~~~~~~~~~~~~~~~~i~~i~ 476 (587)
+|.+.-.+-..-..+....+....+.+.+++|+++.++... .|. .|.+++..... ..+.. ......-.
T Consensus 328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~lt~--g~~~t~Ps 403 (591)
T PRK13616 328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQVLE--GHSLTRPS 403 (591)
T ss_pred CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eeeec--CCCCCCce
Confidence 66665554332222222223334678899999999887765 243 45555543222 33322 22478899
Q ss_pred EeCCCCEEEEEECCCe-EEEEEcCCceeecccceeccc---ccccceEEEEEcCCCCEEEEEcCCCcEEE---EeCCCCe
Q 007855 477 LHPNTNWLAAQSLDNQ-ILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWF---WDWKSCK 549 (587)
Q Consensus 477 ~sp~g~~l~~~s~dg~-I~iwd~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdg~~L~sgs~dG~I~v---wd~~t~~ 549 (587)
|+|+|..|++.+..+. +++.+......+.....-.+. ...+.|..+.|||||..|+... +|.|++ -....|.
T Consensus 404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~ 482 (591)
T PRK13616 404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ 482 (591)
T ss_pred ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence 9999988887764322 222221111111100000000 1134588899999999988765 478877 4444454
Q ss_pred e-E---EEEe-cCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 550 V-F---RTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 550 ~-~---~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
. + ..+. .-...+.++.|.. ++.+ +.+..++...+|
T Consensus 483 ~~l~~~~~l~~~l~~~~~~l~W~~-~~~L-~V~~~~~~~~v~ 522 (591)
T PRK13616 483 YALTNPREVGPGLGDTAVSLDWRT-GDSL-VVGRSDPEHPVW 522 (591)
T ss_pred eeecccEEeecccCCccccceEec-CCEE-EEEecCCCCceE
Confidence 1 1 1122 2333468899998 5554 454544443343
No 392
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.0092 Score=67.28 Aligned_cols=103 Identities=20% Similarity=0.321 Sum_probs=78.5
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
++..-.+.+++.|+..|.|..+|....-. ....+....+.|++++|+.+|++++.|-.+|.|.+||+..++.++.+
T Consensus 93 ~s~a~~~~~ivi~Ts~ghvl~~d~~~nL~----~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i 168 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGTSHGHVLLSDMTGNLG----PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVI 168 (1206)
T ss_pred eeeeeeeeeEEEEcCchhhhhhhhhcccc----hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeee
Confidence 33333566899999999999998876421 12344445688999999999999999999999999999999999988
Q ss_pred ecCCCCEEEE---EEcCCCCCEEEEEECCCc
Q 007855 555 KCHEGVCIGC---EWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 555 ~~h~~~V~~v---~~sp~~~~~l~s~g~DG~ 582 (587)
.-|..+++++ .|.. +++.++++..-|.
T Consensus 169 ~e~~ap~t~vi~v~~t~-~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 169 TEHGAPVTGVIFVGRTS-QNSKLLTSDTGGS 198 (1206)
T ss_pred eecCCccceEEEEEEeC-CCcEEEEccCCCc
Confidence 8777655554 4444 4557888877775
No 393
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.48 E-value=0.46 Score=49.62 Aligned_cols=152 Identities=14% Similarity=0.226 Sum_probs=81.3
Q ss_pred ccCCCcEEEEEe------CCCeEEEEecCCCCeeeEEEccc---CCceeeEEEecCCCeEEEEeC---------------
Q 007855 305 FPKYGHLILSAG------MDTKVKIWDVFNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASY--------------- 360 (587)
Q Consensus 305 sp~~g~~L~sgs------~Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fs~dg~~l~s~s~--------------- 360 (587)
-|+ |.+++|+= .-|-+.+.|- ++...+...... ..--.++.|.|..+.++|...
T Consensus 138 lp~-G~imIS~lGd~~G~g~Ggf~llD~-~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~ 215 (461)
T PF05694_consen 138 LPD-GRIMISALGDADGNGPGGFVLLDG-ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDL 215 (461)
T ss_dssp -SS---EEEEEEEETTS-S--EEEEE-T-TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTH
T ss_pred cCC-ccEEEEeccCCCCCCCCcEEEEcC-ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHh
Confidence 355 77888752 2245677776 445555554432 234567788888888888753
Q ss_pred -----CCeEEEEECCCCcEEEEeecCC---cceEEEEccCCCCCcEEEEEeCCCcEEEEeC-CCCc----EEEEEccC--
Q 007855 361 -----DKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM-NTKE----ITQEYDQH-- 425 (587)
Q Consensus 361 -----Dg~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~-~t~~----~~~~~~~h-- 425 (587)
..++.+||+.+.+.++++..+. .+.-++|..++....-|+.+...++|..|-- ..++ .+..+...
T Consensus 216 ~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v 295 (461)
T PF05694_consen 216 EAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKV 295 (461)
T ss_dssp HHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE-
T ss_pred hcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCccc
Confidence 3689999999999999999874 4556888887776666666666667766644 3332 12222110
Q ss_pred ---------------CCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCC
Q 007855 426 ---------------LGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIP 458 (587)
Q Consensus 426 ---------------~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~ 458 (587)
..-|+.|.+|.|.++|.+++ ..|.|+.||+..+
T Consensus 296 ~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 296 EGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred CcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 24579999999999887766 4789999999764
No 394
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.40 E-value=0.00053 Score=75.27 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=107.7
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECC--CCcEEEEe------ecCCcceEE
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE--TGQVIRTF------STGKIPYVV 387 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~--t~~~i~~~------~~~~~~~~~ 387 (587)
..+-|++-+.......-..+++..+.|-.+.|.. +...++ -.-|.+.||++. .|+....+ ..+..+..+
T Consensus 109 ~~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V 186 (1283)
T KOG1916|consen 109 MENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLV 186 (1283)
T ss_pred hhhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCccee
Confidence 3456777665222211123456677888888854 222222 223678899875 34322221 123444566
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP 467 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~ 467 (587)
.|+|.-.+..++..+..++.|++..+.+... ..+.+|...+..++|...|-.++.+
T Consensus 187 ~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~----------------------- 242 (1283)
T KOG1916|consen 187 SWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLAS----------------------- 242 (1283)
T ss_pred eecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhhee-----------------------
Confidence 7777655556788888889998887765432 3344577777777665444222111
Q ss_pred CCcceeEEEEeCCCCEEEEEECCCeEEEEEcC--CceeecccceecccccccceEEEEEcCC-------C--CEEEEEcC
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDNQILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPD-------G--RFVMSGDG 536 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~i~~l~~spd-------g--~~L~sgs~ 536 (587)
++|||..|+..+.||.+.+|.+. ..........++.|.....+|.+ |..+ + .++++++.
T Consensus 243 ---------lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l-c~~~~~~~v~i~~w~~~Itttd 312 (1283)
T KOG1916|consen 243 ---------LSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL-CHKQEILVVSIGKWVLRITTTD 312 (1283)
T ss_pred ---------eCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee-eccccccCCccceeEEEEeccc
Confidence 56777777777777777766542 11112222333334322334433 2221 1 23455544
Q ss_pred -CCcEEEEeCCCCeeE
Q 007855 537 -EGKCWFWDWKSCKVF 551 (587)
Q Consensus 537 -dG~I~vwd~~t~~~~ 551 (587)
+..+++|.....+|+
T Consensus 313 ~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 313 VNREEKFWAEAPWQCL 328 (1283)
T ss_pred CCcceeEeeccchhhh
Confidence 445899987766665
No 395
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.38 E-value=1.6 Score=45.71 Aligned_cols=195 Identities=16% Similarity=0.229 Sum_probs=95.4
Q ss_pred CCCeEEEEe-CCCeEEEEECCC----CcEEEEeecC--------CcceEEEEccCCCCCcEEEEEeC------CCcEEEE
Q 007855 351 DGTKFLTAS-YDKNIKYWDTET----GQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMS------DKKIVQW 411 (587)
Q Consensus 351 dg~~l~s~s-~Dg~I~vWd~~t----~~~i~~~~~~--------~~~~~~~~~~~~~~~~~l~sg~~------dg~I~iw 411 (587)
+.++|+..+ ..+.|.|.|+.+ .++.+.+... ..+..+.+.++ +.+++++.. -|.+.++
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~---G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPD---GRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS-----EEEEEEEETTS-S--EEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCC---ccEEEEeccCCCCCCCCcEEEE
Confidence 456777766 578899999974 3444544320 12233334443 346666543 2578899
Q ss_pred eCCCCcEEEEEccCCC---CeeEEEEecCCCEEEEEEC--------------------CCCEEEEECCCCeEEEEeecCC
Q 007855 412 DMNTKEITQEYDQHLG---AVNTITFVDNNRRFVTSSD--------------------DKSLRVWEFGIPVVIKYISEPH 468 (587)
Q Consensus 412 D~~t~~~~~~~~~h~~---~I~~i~~sp~~~~l~s~s~--------------------Dg~I~iwd~~~~~~~~~~~~~~ 468 (587)
|-.+.++......... --..+-|.|..+.++|+.. ..+|.+||+...+.++.+..+.
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~ 242 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGE 242 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-T
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCC
Confidence 9888888777754332 3456778888888888752 3579999999999999998765
Q ss_pred Ccc-eeEEEEeC--CCCE-EEEEECCCeEEEEEc-CCce-eecccceeccc---------------ccccceEEEEEcCC
Q 007855 469 MHS-MPSISLHP--NTNW-LAAQSLDNQILIYST-RERF-QLNKKKRFAGH---------------IVAGYACQVNFSPD 527 (587)
Q Consensus 469 ~~~-i~~i~~sp--~g~~-l~~~s~dg~I~iwd~-~~~~-~~~~~~~~~~~---------------~~~~~i~~l~~spd 527 (587)
.+. ...+.|.. +..+ ++.+.....|..|-- ..+. .......+... .....++.|.+|.|
T Consensus 243 ~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlD 322 (461)
T PF05694_consen 243 EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLD 322 (461)
T ss_dssp TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TT
T ss_pred CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccC
Confidence 553 44566654 3444 333344555655533 2221 11111111110 01356789999999
Q ss_pred CCEEEEEc-CCCcEEEEeCCCC
Q 007855 528 GRFVMSGD-GEGKCWFWDWKSC 548 (587)
Q Consensus 528 g~~L~sgs-~dG~I~vwd~~t~ 548 (587)
.+||...+ ..|.|+.||+...
T Consensus 323 DrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 323 DRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp S-EEEEEETTTTEEEEEE-SST
T ss_pred CCEEEEEcccCCcEEEEecCCC
Confidence 99997655 6899999999753
No 396
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.32 E-value=1.3 Score=47.66 Aligned_cols=146 Identities=13% Similarity=0.251 Sum_probs=84.6
Q ss_pred CCeEEEEEccCCCcEEEEEe--CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC----CCeEEEEeCCCeEEEEECC
Q 007855 297 KGVSAIRFFPKYGHLILSAG--MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND----GTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs--~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d----g~~l~s~s~Dg~I~vWd~~ 370 (587)
.+|..|+|... .+.+++.- .+|.+++= +...+ |.-..|..++|.|- -..|++......|.||.+.
T Consensus 20 HPvhGlaWTDG-kqVvLT~L~l~~gE~kfG----ds~vi----GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~ 90 (671)
T PF15390_consen 20 HPVHGLAWTDG-KQVVLTDLQLHNGEPKFG----DSKVI----GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLC 90 (671)
T ss_pred ccccceEecCC-CEEEEEeeeeeCCccccC----CccEe----eccceeeeeeecCcccCCCCceEEEeccceEEEEEec
Confidence 46888999754 44555532 23333331 22333 33356899999983 3367777788999999875
Q ss_pred -----CCcEEEEe--ecC----CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--cEEEEEccCCCCeeEEEEecC
Q 007855 371 -----TGQVIRTF--STG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 371 -----t~~~i~~~--~~~----~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~~~~~~~~h~~~I~~i~~sp~ 437 (587)
+++.+..- ... --+.-+.|+|... +|++-.....-.+++++.. .....+ ...+-|.|.+|.+|
T Consensus 91 ~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~---iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~D 166 (671)
T PF15390_consen 91 PSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA---ILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKD 166 (671)
T ss_pred cCccccccceeeeeeeccCCcccCCCcccccCCCc---eEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCc
Confidence 23333221 111 1234566777543 4444444444345555432 333334 45688999999999
Q ss_pred CCEEEEEECC-CCEEEEEC
Q 007855 438 NRRFVTSSDD-KSLRVWEF 455 (587)
Q Consensus 438 ~~~l~s~s~D-g~I~iwd~ 455 (587)
|++|+++-.. =.-+|||-
T Consensus 167 G~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CCEEEEEeCCeEEEEEecC
Confidence 9998776433 34577773
No 397
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.18 E-value=0.23 Score=55.14 Aligned_cols=216 Identities=11% Similarity=0.094 Sum_probs=113.1
Q ss_pred CCCeEEEEeCC------CeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCC------CcEEEEeCCCC
Q 007855 351 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTK 416 (587)
Q Consensus 351 dg~~l~s~s~D------g~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~d------g~I~iwD~~t~ 416 (587)
.+..++.|+.+ ..+..+|..++......... .....+++.. +.++++|+.+ ..+..||.+++
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~----~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN----GKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEEC----CEEEEEccccCCCcccceEEEecCCCC
Confidence 34455566655 46778888887554433322 2222333332 2678888888 35778888877
Q ss_pred cEEEE--EccCCCCeeEEEEecCCCEEEEEECCCC-----EEEEECCCCeEEEEeecCCCcceeEEE-EeCCCCEEEEEE
Q 007855 417 EITQE--YDQHLGAVNTITFVDNNRRFVTSSDDKS-----LRVWEFGIPVVIKYISEPHMHSMPSIS-LHPNTNWLAAQS 488 (587)
Q Consensus 417 ~~~~~--~~~h~~~I~~i~~sp~~~~l~s~s~Dg~-----I~iwd~~~~~~~~~~~~~~~~~i~~i~-~sp~g~~l~~~s 488 (587)
+-... +........... -+|...++|+.||. |-.||..+.+-...- +......... ..-+|...++|+
T Consensus 360 ~W~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG 435 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGG 435 (571)
T ss_pred ceeccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcC
Confidence 64432 111111111112 26788899998874 677777655432221 1111222222 223677777777
Q ss_pred CCC------eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCc-----EEEEeCCCCee--EEEEe
Q 007855 489 LDN------QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-----CWFWDWKSCKV--FRTLK 555 (587)
Q Consensus 489 ~dg------~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~-----I~vwd~~t~~~--~~~l~ 555 (587)
.++ .+..||..+.. ......+... ..... + -.-++.+.+.|+.+|. |..||..+.+- +..+.
T Consensus 436 ~~~~~~~l~sve~YDP~t~~-W~~~~~M~~~--R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~ 510 (571)
T KOG4441|consen 436 GDGSSNCLNSVECYDPETNT-WTLIAPMNTR--RSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT 510 (571)
T ss_pred cCCCccccceEEEEcCCCCc-eeecCCcccc--cccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc
Confidence 553 46777766532 1111111111 11111 1 1225777788887763 77788776543 32233
Q ss_pred cCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 556 CHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 556 ~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
.....+-.+.+ ++.+.+.||.||.
T Consensus 511 ~~rs~~g~~~~---~~~ly~vGG~~~~ 534 (571)
T KOG4441|consen 511 SPRSAVGVVVL---GGKLYAVGGFDGN 534 (571)
T ss_pred cccccccEEEE---CCEEEEEecccCc
Confidence 33333333333 5678888888875
No 398
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.17 E-value=2.2 Score=45.12 Aligned_cols=88 Identities=13% Similarity=0.148 Sum_probs=57.9
Q ss_pred CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCC--------------CCEE-EE
Q 007855 469 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD--------------GRFV-MS 533 (587)
Q Consensus 469 ~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd--------------g~~L-~s 533 (587)
...+.+++.+|++++.++...=|.|.++|+..+..+...+.++.... +++....-... ..+| +-
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc-~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQC-GWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceE-EEEEeecccccccccccccCCCCcceEEEEEE
Confidence 34478899999999988887779999999988766655554443321 11111110000 1233 34
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecC
Q 007855 534 GDGEGKCWFWDWKSCKVFRTLKCH 557 (587)
Q Consensus 534 gs~dG~I~vwd~~t~~~~~~l~~h 557 (587)
.-.-|.|.||.+++|..+..+...
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEEeC
Confidence 556889999999999888877653
No 399
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=96.10 E-value=1.8 Score=44.83 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=107.5
Q ss_pred EEEecCCCeEEEEeC---CCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE
Q 007855 346 ISFCNDGTKFLTASY---DKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 421 (587)
Q Consensus 346 l~fs~dg~~l~s~s~---Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~ 421 (587)
=+|.++|+.|+.++. ...+.+.|+.+++..+.-..... .....+++.+ +.++.......|.-.|+.+.+....
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~---~~~~Yv~~~~~l~~vdL~T~e~~~v 117 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD---RALYYVKNGRSLRRVDLDTLEERVV 117 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS---SEEEEEETTTEEEEEETTT--EEEE
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC---CeEEEEECCCeEEEEECCcCcEEEE
Confidence 357788987776655 45677779999887776554322 2223444543 3454455567899999999987777
Q ss_pred EccCCCCeeEEEEe--cCCCEEEEEE----------------------CCCCEEEEECCCCeEEEEeecCCCcceeEEEE
Q 007855 422 YDQHLGAVNTITFV--DNNRRFVTSS----------------------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISL 477 (587)
Q Consensus 422 ~~~h~~~I~~i~~s--p~~~~l~s~s----------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~ 477 (587)
+......+-...|. .++..++-.- -...|.-.|+.++.....+. ....+..+.+
T Consensus 118 y~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~--~~~wlgH~~f 195 (386)
T PF14583_consen 118 YEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE--DTDWLGHVQF 195 (386)
T ss_dssp EE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE--ESS-EEEEEE
T ss_pred EECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe--cCccccCccc
Confidence 77677777666664 3454443221 12235555677666544442 4456778899
Q ss_pred eCCCCEEEEEECCC-----eEEEEEcCCc-eeecccceecccccccceEEEEEcCCCCEEEEEc-----CCCcEEEEeCC
Q 007855 478 HPNTNWLAAQSLDN-----QILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----GEGKCWFWDWK 546 (587)
Q Consensus 478 sp~g~~l~~~s~dg-----~I~iwd~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-----~dG~I~vwd~~ 546 (587)
+|....+++-|..| .-+||-++.. .....+ ..+.....+..=-|+|||..|.--+ .+..|.-+|..
T Consensus 196 sP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v---~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 196 SPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKV---HRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp ETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EES---S---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCCEEEEeccCCcceeceEEEEEEcCCCcceee---ecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCC
Confidence 99765555544432 1255544321 111111 1122223344456899999776422 24457778888
Q ss_pred CCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 547 SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 547 t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
+++....... ..+..+..++ ++.+++-=|.|
T Consensus 273 t~~~~~~~~~--p~~~H~~ss~-Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLMEM--PWCSHFMSSP-DGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEEE---SEEEEEE-T-TSSEEEEEE--
T ss_pred CCCceEEEeC--CceeeeEEcC-CCCEEEecCCC
Confidence 8765433222 2455566666 66666554544
No 400
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.05 E-value=0.32 Score=47.88 Aligned_cols=161 Identities=8% Similarity=0.048 Sum_probs=108.9
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 423 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 423 ~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.+-...+.+++|+|+.+.|++......-.||=-..+..+..+....-+..-.+.+..+++++++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 34455699999999999999999888888887778888888876666667778888899888888888999988775442
Q ss_pred eecccce----eccccc-ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee---EEEEecCC-------CCEEEEEEc
Q 007855 503 QLNKKKR----FAGHIV-AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV---FRTLKCHE-------GVCIGCEWH 567 (587)
Q Consensus 503 ~~~~~~~----~~~~~~-~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~---~~~l~~h~-------~~V~~v~~s 567 (587)
....... +..... ....-.++|+|....|+.+-.-.-+.||.+..+.. +.....+. ..|.++.|+
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~ 241 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN 241 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence 2211111 111111 23344699999999888888777777776653321 11111111 246777888
Q ss_pred CCCCCEEEEEECCCcE
Q 007855 568 PLEQSKVATCGWDGLI 583 (587)
Q Consensus 568 p~~~~~l~s~g~DG~I 583 (587)
+..+.+|+-+..++.|
T Consensus 242 ~~~~~LLVLS~ESr~l 257 (316)
T COG3204 242 AITNSLLVLSDESRRL 257 (316)
T ss_pred CCCCcEEEEecCCceE
Confidence 7666666666666554
No 401
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.99 E-value=1.5 Score=43.37 Aligned_cols=197 Identities=9% Similarity=0.125 Sum_probs=117.9
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 007855 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~ 378 (587)
.-++|.+....+...+... .-+|...-.-... +.+.+-...|.++.|+|+.+.|++......-.||=...|+.+.++
T Consensus 46 f~~a~~k~~~~~~~~~~r~--~~~~l~~y~~~i~akpi~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdlirti 123 (316)
T COG3204 46 FPCAWFKAGQTNGLDLSRY--IARYLLEYRARIDAKPILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTI 123 (316)
T ss_pred eeeEEEeccccccccccch--hhhccCCceEEEeccccccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEe
Confidence 3444544423334444444 5555541111111 123455566999999999999999988888888888889999988
Q ss_pred ecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE----------EccCCCCeeEEEEecCCCEEEEEEC
Q 007855 379 STGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----------YDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 379 ~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~----------~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
.... .+..+.+.-. +.++++--.+..+.++.+.....+.. ........-.++|.|....|+.+-.
T Consensus 124 PL~g~~DpE~Ieyig~---n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 124 PLTGFSDPETIEYIGG---NQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cccccCChhHeEEecC---CEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 7543 2333444332 23455555667777776654421111 1112556778999999999999988
Q ss_pred CCCEEEEECCCCeEE--EEeecC-------CCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCc
Q 007855 447 DKSLRVWEFGIPVVI--KYISEP-------HMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~--~~~~~~-------~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~ 501 (587)
-.-+.||.+...... ...... ....+.++.+++. +.+|+.+..++.+.-.|....
T Consensus 201 r~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 201 RNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 888888776532211 001000 1234677788864 556666666777777776543
No 402
>PHA03098 kelch-like protein; Provisional
Probab=95.96 E-value=0.39 Score=53.08 Aligned_cols=182 Identities=10% Similarity=0.093 Sum_probs=87.2
Q ss_pred CcEEEEEeCCC------eEEEEecCCCCeeeEEEcc---cCCceeeEEEecCCCeEEEEeCC-----CeEEEEECCCCcE
Q 007855 309 GHLILSAGMDT------KVKIWDVFNSGKCMRTYMG---HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQV 374 (587)
Q Consensus 309 g~~L~sgs~Dg------~I~iWd~~~~~~~~~~~~~---h~~~V~~l~fs~dg~~l~s~s~D-----g~I~vWd~~t~~~ 374 (587)
+.+++.||.++ .+..||. .+... ..+.. .......+ .-++..++.||.+ ..+..||..+++.
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~-~~~~W-~~~~~~~~~R~~~~~~--~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W 370 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDT-KTKSW-NKVPELIYPRKNPGVT--VFNNRIYVIGGIYNSISLNTVESWKPGESKW 370 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeC-CCCee-eECCCCCcccccceEE--EECCEEEEEeCCCCCEecceEEEEcCCCCce
Confidence 56777776543 4667776 33332 22221 11111122 2266777777765 3577888877654
Q ss_pred EEEeec--CCcceEEEEccCCCCCcEEEEEeCC------CcEEEEeCCCCcEEEEEccCCC-CeeEEEEecCCCEEEEEE
Q 007855 375 IRTFST--GKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLG-AVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 375 i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~d------g~I~iwD~~t~~~~~~~~~h~~-~I~~i~~sp~~~~l~s~s 445 (587)
...-.. .....++.. . ++.+++.|+.. ..+..||+.+++....-..... .-.+++ .-++..++.|+
T Consensus 371 ~~~~~lp~~r~~~~~~~-~---~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG 445 (534)
T PHA03098 371 REEPPLIFPRYNPCVVN-V---NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAI-YHDGKIYVIGG 445 (534)
T ss_pred eeCCCcCcCCccceEEE-E---CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEE-EECCEEEEECC
Confidence 332221 111222222 1 23567777632 4588899887654322110101 111222 23566777776
Q ss_pred CCC--------CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCC
Q 007855 446 DDK--------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRE 500 (587)
Q Consensus 446 ~Dg--------~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~ 500 (587)
.+. .+.+||..+..-...-..+....-.+++.. ++..++.|+.+ +.|.+||..+
T Consensus 446 ~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 446 ISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE-CCEEEEEcCCcCCcccceeEEEeCCC
Confidence 432 378888876543322111111111122222 56666666543 4577777654
No 403
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=95.86 E-value=2.2 Score=42.53 Aligned_cols=228 Identities=11% Similarity=0.129 Sum_probs=127.6
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCC------CCeeeEEEcc-----cCCceeeEEEecCCC------------e
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFN------SGKCMRTYMG-----HSKAVRDISFCNDGT------------K 354 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~------~~~~~~~~~~-----h~~~V~~l~fs~dg~------------~ 354 (587)
.-..|+|+|. +.+-++....+...+||... ...++.++.. .....+.+.|+.... .
T Consensus 24 N~WGia~~p~-~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~ 102 (336)
T TIGR03118 24 NAWGLSYRPG-GPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSR 102 (336)
T ss_pred ccceeEecCC-CCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCccccee
Confidence 3567999998 78888888889999999831 1233344432 234577888875332 3
Q ss_pred EEEEeCCCeEEEEECCCCcE-----EEEeecC--Ccc-eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE--EEcc
Q 007855 355 FLTASYDKNIKYWDTETGQV-----IRTFSTG--KIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQ 424 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~-----i~~~~~~--~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~--~~~~ 424 (587)
|+.++.||+|.-|...-+.. ...+... ... .-+++........+.++-...++|.+||-.-..... .+..
T Consensus 103 Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 103 FLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 67888999999998533222 1122211 112 234444333333455555667899998864332210 0100
Q ss_pred C-----CCC--eeE------EEE---ecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC------CCC
Q 007855 425 H-----LGA--VNT------ITF---VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP------NTN 482 (587)
Q Consensus 425 h-----~~~--I~~------i~~---sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp------~g~ 482 (587)
. -.+ |.. +.| .++...=+.+..-|.|-+||+.-....+.........-..|+..| .+.
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 0 000 111 111 111112222333468999998755554444455566677888876 567
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceecccc-cccceEEEEEcC
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHI-VAGYACQVNFSP 526 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp 526 (587)
+|+---.||+|..||..++..+-.+....++. .-..+..|+|-.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 77777889999999988776554444333332 112244555543
No 404
>PRK10115 protease 2; Provisional
Probab=95.79 E-value=4.8 Score=45.90 Aligned_cols=241 Identities=10% Similarity=0.123 Sum_probs=115.9
Q ss_pred CeEEEEEccCCCcEEEEE-eC----CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC------CeEEE
Q 007855 298 GVSAIRFFPKYGHLILSA-GM----DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKY 366 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sg-s~----Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D------g~I~v 366 (587)
.+..+.|+|+ +++|+.+ +. ...|++-|+ .++..+........ ..++|++|++.|+.+..+ ..|.+
T Consensus 128 ~l~~~~~Spd-g~~la~~~d~~G~E~~~l~v~d~-~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 128 TLGGMAITPD-NTIMALAEDFLSRRQYGIRFRNL-ETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEeEEEECCC-CCEEEEEecCCCcEEEEEEEEEC-CCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence 5778899999 6666654 22 245788888 45653322222222 469999998877665443 36788
Q ss_pred EECCCC--cEEEEeecCCcceEEEEccCCCCCcEEEEEeC--CCcEEEEeCC--CCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 367 WDTETG--QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMN--TKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 367 Wd~~t~--~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~--dg~I~iwD~~--t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
+++.++ +....+........+......+...+++.... ++.+.+++.. .+.....+....+....+. +.. ..
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~ 281 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQ-HR 281 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCC-CE
Confidence 888888 43444443332222222222222233433332 3578888843 3432222222222222222 323 33
Q ss_pred EEEEECC--C--CEEEEECCCCeEEEEeecC-CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC-ceeecccceecccc
Q 007855 441 FVTSSDD--K--SLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHI 514 (587)
Q Consensus 441 l~s~s~D--g--~I~iwd~~~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~ 514 (587)
|...+.. . .|...++........+... ....+..+.+. .+.++++...++.-+++-+.. ...+..+. +..
T Consensus 282 ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~-~~~-- 357 (686)
T PRK10115 282 FYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQINRKTREVIGIA-FDD-- 357 (686)
T ss_pred EEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEEcCCCCceEEec-CCC--
Confidence 3333332 2 3444444422222333333 23467778877 334555556666655554332 11111111 111
Q ss_pred cccceEEEEEc--CCCC-EEEEEc---CCCcEEEEeCCCCe
Q 007855 515 VAGYACQVNFS--PDGR-FVMSGD---GEGKCWFWDWKSCK 549 (587)
Q Consensus 515 ~~~~i~~l~~s--pdg~-~L~sgs---~dG~I~vwd~~t~~ 549 (587)
...+..+.++ +++. ++++.+ .-+.++.+|+.+++
T Consensus 358 -~~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 358 -PAYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred -CceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 1122223344 3433 444333 34678888887764
No 405
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.75 E-value=0.75 Score=45.45 Aligned_cols=145 Identities=16% Similarity=0.135 Sum_probs=86.2
Q ss_pred CeeEEEEecCCCEEEEEE---CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEE-cCCcee
Q 007855 428 AVNTITFVDNNRRFVTSS---DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS-TRERFQ 503 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd-~~~~~~ 503 (587)
.+.+.++++++..++... ....|+++..... ..... ....+..-+|++++...++...+...+++. ...+..
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~--~~~~~--~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP--VRPVL--TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc--ceeec--cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688899999999877766 3334555554433 22221 233778889999987777777666666663 222211
Q ss_pred ecccceecccccccceEEEEEcCCCCEEEEEc---CCCcEEEEeCC---CC------eeEEEEecCCCCEEEEEEcCCCC
Q 007855 504 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWFWDWK---SC------KVFRTLKCHEGVCIGCEWHPLEQ 571 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs---~dG~I~vwd~~---t~------~~~~~l~~h~~~V~~v~~sp~~~ 571 (587)
....-.... ....|..+.+||||..++... .++.|.+--+. .+ ..+.........++.+.|.+ +.
T Consensus 101 ~~~~v~~~~--~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~-~~ 177 (253)
T PF10647_consen 101 EPVEVDWPG--LRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD-DS 177 (253)
T ss_pred eeEEecccc--cCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC-CC
Confidence 111111111 112788999999999887655 45777776542 23 11122223345789999999 55
Q ss_pred CEEEEEEC
Q 007855 572 SKVATCGW 579 (587)
Q Consensus 572 ~~l~s~g~ 579 (587)
.+++.+..
T Consensus 178 ~L~V~~~~ 185 (253)
T PF10647_consen 178 TLVVLGRS 185 (253)
T ss_pred EEEEEeCC
Confidence 55555544
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.51 E-value=4.1 Score=43.18 Aligned_cols=145 Identities=12% Similarity=0.132 Sum_probs=89.6
Q ss_pred CCeEEEEeCCCeEEEEECCCCc-----EEEEeecCCcceEEEEccC-CCCCcEEEEEeCCCcEEEEeCCC--Cc------
Q 007855 352 GTKFLTASYDKNIKYWDTETGQ-----VIRTFSTGKIPYVVKLNPD-DDKQNILLAGMSDKKIVQWDMNT--KE------ 417 (587)
Q Consensus 352 g~~l~s~s~Dg~I~vWd~~t~~-----~i~~~~~~~~~~~~~~~~~-~~~~~~l~sg~~dg~I~iwD~~t--~~------ 417 (587)
...+++||..|.++||+...+. .+.......++..+.+-.. .......++.-.-.++.+|.+.. +.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~ 116 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQ 116 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcE
Confidence 4589999999999999986543 4445555555555444432 12233444456667888887731 11
Q ss_pred -EEEEEccCCC--CeeEEEEec----C-CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 418 -ITQEYDQHLG--AVNTITFVD----N-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 418 -~~~~~~~h~~--~I~~i~~sp----~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
.+..+..|.- ....+++-| . ...|.+-+.||.+.+|+-+.-.....+. ..--...+++.+....|++++.
T Consensus 117 ~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 117 YQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLP--DFLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcC--CCCCCcCeEEeecCCEEEEecC
Confidence 1112222322 223333332 2 3578888999999999977655444432 2223345788888889999999
Q ss_pred CCeEEEEEc
Q 007855 490 DNQILIYST 498 (587)
Q Consensus 490 dg~I~iwd~ 498 (587)
+..|..|..
T Consensus 195 s~~l~~Yky 203 (418)
T PF14727_consen 195 SWTLECYKY 203 (418)
T ss_pred ceeEEEecH
Confidence 999999874
No 407
>PRK13684 Ycf48-like protein; Provisional
Probab=95.21 E-value=4.5 Score=41.77 Aligned_cols=272 Identities=12% Similarity=0.091 Sum_probs=133.7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc----ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 371 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t 371 (587)
...+++|+|... .+-+++|. +|.| |...+.++.-.... .....+.++.|..+ ..+++ +..+.|.. ..+.
T Consensus 45 ~~~l~~v~F~d~-~~g~avG~-~G~i--l~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~i~~-S~Dg 117 (334)
T PRK13684 45 EANLLDIAFTDP-NHGWLVGS-NRTL--LETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSLLLH-TTDG 117 (334)
T ss_pred CCceEEEEEeCC-CcEEEEEC-CCEE--EEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCceEEE-ECCC
Confidence 457889999855 56666664 5544 33323332222211 12334778888643 33444 44444332 2233
Q ss_pred CcEEEEeecC----Ccce-EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCCEEEEEE
Q 007855 372 GQVIRTFSTG----KIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 372 ~~~i~~~~~~----~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
|+.-..+... .... +..+.. ...++ .+..|.|..=+ ..++.-.. ...-.+.+.++.+.+++.+++ .+
T Consensus 118 G~tW~~~~~~~~~~~~~~~i~~~~~----~~~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~~g~~v~-~g 190 (334)
T PRK13684 118 GKNWTRIPLSEKLPGSPYLITALGP----GTAEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSPDGKYVA-VS 190 (334)
T ss_pred CCCCeEccCCcCCCCCceEEEEECC----Cccee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECCCCeEEE-Ee
Confidence 3322222211 1112 111111 12233 33334332211 12221111 122346788999998876554 44
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
..|.+..-.-..+.....+..+....+.++.+.+++..++++ ..|.+++=+...+........ ........+..+.+.
T Consensus 191 ~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~ 268 (334)
T PRK13684 191 SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPII-PEITNGYGYLDLAYR 268 (334)
T ss_pred CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccC-CccccccceeeEEEc
Confidence 456554321122233333444566788999999999877765 457664323344333322111 101112346678899
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 526 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 526 pdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+++..+++| .+|.|. .....++....+.. -......+.|.. ++ .++..|..|.|-.|+
T Consensus 269 ~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~-~~-~~~~~G~~G~il~~~ 329 (334)
T PRK13684 269 TPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLD-PE-KGFVLGQRGVLLRYV 329 (334)
T ss_pred CCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeC-CC-ceEEECCCceEEEec
Confidence 988766655 466554 44455554444432 123477787775 44 456677788887664
No 408
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.17 E-value=4.2 Score=46.71 Aligned_cols=114 Identities=14% Similarity=0.202 Sum_probs=73.4
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeecCCcce-------E--EEEccC-------------CCCCcEEEEEeCCCcEE
Q 007855 352 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPY-------V--VKLNPD-------------DDKQNILLAGMSDKKIV 409 (587)
Q Consensus 352 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~-------~--~~~~~~-------------~~~~~~l~sg~~dg~I~ 409 (587)
+..|+.++.++.|.-.|..+|+.+.++....... | +.+... ......++.++.|+.|.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 4567777888899999999999988876543211 0 111110 01224688899999999
Q ss_pred EEeCCCCcEEEEEccCCCCee-------------EEEEec--CCCEEEEEEC----------CCCEEEEECCCCeEEEEe
Q 007855 410 QWDMNTKEITQEYDQHLGAVN-------------TITFVD--NNRRFVTSSD----------DKSLRVWEFGIPVVIKYI 464 (587)
Q Consensus 410 iwD~~t~~~~~~~~~h~~~I~-------------~i~~sp--~~~~l~s~s~----------Dg~I~iwd~~~~~~~~~~ 464 (587)
-.|..+|+.+..+.. .+.|. .+.-.| .+..+++++. +|.|+-+|..+++.+-.+
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998877632 22211 011111 1345666643 688999999999988776
Q ss_pred ec
Q 007855 465 SE 466 (587)
Q Consensus 465 ~~ 466 (587)
..
T Consensus 353 ~~ 354 (764)
T TIGR03074 353 DP 354 (764)
T ss_pred ec
Confidence 53
No 409
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.12 E-value=5.1 Score=41.94 Aligned_cols=197 Identities=16% Similarity=0.077 Sum_probs=107.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCC---cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL- 426 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~- 426 (587)
++ .++.+..+|.|.-.|.+++..+....... ....-.+..+ ..+++++.++.++.+|..+++.+..+....
T Consensus 68 dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~----G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 68 DG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSD----GKIYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred CC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeC----CeEEEecccceEEEEECCCCcEEEEEecCCC
Confidence 44 45555788889999999998776544332 1111111112 248899999999999999999888876555
Q ss_pred CCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC--CcceeEEEEeCCCCEEEEEEC--CCeEEEEEcCCce
Q 007855 427 GAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERF 502 (587)
Q Consensus 427 ~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~i~~i~~sp~g~~l~~~s~--dg~I~iwd~~~~~ 502 (587)
..+..-.+..++ .++.++.++.+...+..++...-...... ...+..-... ....++.+.. ++.+.-++..++.
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCc
Confidence 112222222233 34444477888888888777655533221 1111111111 2233444444 5556666665554
Q ss_pred eeccccee--cccc-----cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC
Q 007855 503 QLNKKKRF--AGHI-----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 557 (587)
Q Consensus 503 ~~~~~~~~--~~~~-----~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h 557 (587)
.....+.. .+.. .......+-. +.-++.++.+|.+...+..+++.+..+...
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v---~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV---DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE---CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 43221110 0000 0000000111 123356777888999999999988888764
No 410
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.09 E-value=0.23 Score=56.82 Aligned_cols=143 Identities=11% Similarity=0.060 Sum_probs=90.9
Q ss_pred ceeeEEEecCCCeEEEE--eCCCeEEEEECCCCcEEE--------E----eecCCcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 342 AVRDISFCNDGTKFLTA--SYDKNIKYWDTETGQVIR--------T----FSTGKIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~--s~Dg~I~vWd~~t~~~i~--------~----~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
+|..+...+|++..++. +.+-.|..||+++-..-. . +.......++.|.|.-. ...++...|+.
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp--~n~av~l~dls 179 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP--LNSAVDLSDLS 179 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc--chhhhhccccc
Confidence 45566666676655443 344578899987542211 1 11223344566666543 45778888999
Q ss_pred EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec---CCCcceeEEEEeCCCCEE
Q 007855 408 IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWL 484 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---~~~~~i~~i~~sp~g~~l 484 (587)
|++.-+........--.....++|++|+|.|+.+++|-..|++.-|...-.. ...+.. .....|.+++|-....++
T Consensus 180 l~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e~yrvl~v~Wl~t~efl 258 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEENYRVLSVTWLSTQEFL 258 (1405)
T ss_pred hhhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCCCcceeEEEEecceeEE
Confidence 9988776443222212345678999999999999999999999988764332 122222 124679999998877666
Q ss_pred EEE
Q 007855 485 AAQ 487 (587)
Q Consensus 485 ~~~ 487 (587)
++-
T Consensus 259 vvy 261 (1405)
T KOG3630|consen 259 VVY 261 (1405)
T ss_pred EEe
Confidence 654
No 411
>PHA03098 kelch-like protein; Provisional
Probab=95.09 E-value=1.2 Score=49.12 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=90.7
Q ss_pred CCCeEEEEeCCC------eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCcEE
Q 007855 351 DGTKFLTASYDK------NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEIT 419 (587)
Q Consensus 351 dg~~l~s~s~Dg------~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~~~~ 419 (587)
++..++.|+.++ .+..||..+.+....-.............. ++.+++.|+.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 556666666542 577888887765332221111111111111 23577777765 35778888776533
Q ss_pred EEEcc-CCCCeeEEEEecCCCEEEEEECC------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC--
Q 007855 420 QEYDQ-HLGAVNTITFVDNNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-- 490 (587)
Q Consensus 420 ~~~~~-h~~~I~~i~~sp~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-- 490 (587)
..-.- +...-.+++ .-++..++.|+.+ ..+..||..+..-......+......+++. .++..++.|+.+
T Consensus 372 ~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 449 (534)
T PHA03098 372 EEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIY-HDGKIYVIGGISYI 449 (534)
T ss_pred eCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEE-ECCEEEEECCccCC
Confidence 22111 111111222 2356777777732 357888887654332221111111122222 355566666532
Q ss_pred ------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007855 491 ------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 549 (587)
Q Consensus 491 ------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~ 549 (587)
..+.+||..+.. .......... ......+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 450 ~~~~~~~~v~~yd~~~~~-W~~~~~~~~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 450 DNIKVYNIVESYNPVTNK-WTELSSLNFP--RINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCCcccceEEEecCCCCc-eeeCCCCCcc--cccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCE
Confidence 237888876542 1111111111 111111222 66777777654 468888877653
No 412
>PHA02790 Kelch-like protein; Provisional
Probab=95.04 E-value=2 Score=46.84 Aligned_cols=180 Identities=9% Similarity=-0.004 Sum_probs=83.7
Q ss_pred CcEEEEEeCCC-----eEEEEecCCCCeeeE--EEcccCCceeeEEEecCCCeEEEEeCC--CeEEEEECCCCcEEEEee
Q 007855 309 GHLILSAGMDT-----KVKIWDVFNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYD--KNIKYWDTETGQVIRTFS 379 (587)
Q Consensus 309 g~~L~sgs~Dg-----~I~iWd~~~~~~~~~--~~~~h~~~V~~l~fs~dg~~l~s~s~D--g~I~vWd~~t~~~i~~~~ 379 (587)
+.+++.||.++ .+..||. ....... .+...... .+++ .-++...+.|+.+ ..+..||..+++....-.
T Consensus 272 ~~lyviGG~~~~~~~~~v~~Ydp-~~~~W~~~~~m~~~r~~-~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~ 348 (480)
T PHA02790 272 EVVYLIGGWMNNEIHNNAIAVNY-ISNNWIPIPPMNSPRLY-ASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS 348 (480)
T ss_pred CEEEEEcCCCCCCcCCeEEEEEC-CCCEEEECCCCCchhhc-ceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence 56667777543 4667776 3332221 11111111 1122 2367777777754 357888887665433222
Q ss_pred cCCcceEEEEccCCCCCcEEEEEeCCC---cEEEEeCCCCcEEEE--EccCCCCeeEEEEecCCCEEEEEECCCCEEEEE
Q 007855 380 TGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQE--YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454 (587)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sg~~dg---~I~iwD~~t~~~~~~--~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd 454 (587)
........+.... ++.+.+.|+.++ .+..||..+.+-... +....... +++ .-++...+.| |.+.+||
T Consensus 349 l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~-~~~-~~~~~IYv~G---G~~e~yd 421 (480)
T PHA02790 349 LLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKS-CAL-VFGRRLFLVG---RNAEFYC 421 (480)
T ss_pred CCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccc-eEE-EECCEEEEEC---CceEEec
Confidence 2221111111111 235677777553 467888877654332 11111111 222 2356666666 3577888
Q ss_pred CCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcC
Q 007855 455 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTR 499 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~ 499 (587)
..+..-...-..+....-.+++.. +++..++|+.+ ..|.+||..
T Consensus 422 p~~~~W~~~~~m~~~r~~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~ 470 (480)
T PHA02790 422 ESSNTWTLIDDPIYPRDNPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNR 470 (480)
T ss_pred CCCCcEeEcCCCCCCccccEEEEE-CCEEEEECCcCCCcccceEEEEECC
Confidence 876544322211111112223322 55666666543 234455543
No 413
>PRK10115 protease 2; Provisional
Probab=95.04 E-value=8.4 Score=43.99 Aligned_cols=112 Identities=10% Similarity=0.078 Sum_probs=66.4
Q ss_pred CceeeEEEecCCCeEEEEeCC-----CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC-----CcEEE
Q 007855 341 KAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQ 410 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~D-----g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~i 410 (587)
-.+..+.|+|+|++|+.+... -.|++.|+.+|..+...... ....+.|.+++. .++++...+ ..|+.
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~-~~~~~~w~~D~~--~~~y~~~~~~~~~~~~v~~ 203 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDN-VEPSFVWANDSW--TFYYVRKHPVTLLPYQVWR 203 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccC-cceEEEEeeCCC--EEEEEEecCCCCCCCEEEE
Confidence 346778899999988765332 36889999988643322111 124467766543 455554432 36888
Q ss_pred EeCCCC--cEEEEEccCCCCee-EEEEecCCCEEEEEEC---CCCEEEEEC
Q 007855 411 WDMNTK--EITQEYDQHLGAVN-TITFVDNNRRFVTSSD---DKSLRVWEF 455 (587)
Q Consensus 411 wD~~t~--~~~~~~~~h~~~I~-~i~~sp~~~~l~s~s~---Dg~I~iwd~ 455 (587)
+++.++ +-...+........ .+..+.++++++..+. ++.+.+++.
T Consensus 204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 888887 43444443333333 3333447777665543 346888885
No 414
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.03 E-value=4 Score=40.24 Aligned_cols=160 Identities=9% Similarity=0.102 Sum_probs=92.8
Q ss_pred CCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc-EEEEeCCCCcEEEEEccCCCC--eeEEEEecCCCEEEEEECC
Q 007855 371 TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTKEITQEYDQHLGA--VNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 371 t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-I~iwD~~t~~~~~~~~~h~~~--I~~i~~sp~~~~l~s~s~D 447 (587)
.|+++..........-+.++|... .-++.+-.-|+ ..++|....+....+....+. --.-.|+++|.+|..+-.|
T Consensus 57 aGk~v~~~~lpaR~Hgi~~~p~~~--ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEnd 134 (366)
T COG3490 57 AGKIVFATALPARGHGIAFHPALP--RAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEND 134 (366)
T ss_pred CCceeeeeecccccCCeecCCCCc--ceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCC
Confidence 466666666665566667777544 34555544444 567898887766554322221 1124689999999887544
Q ss_pred -----CCEEEEECCCCeE-EEEeecCCCcceeEEEEeCCCCEEEEEEC------------------CCeEEEEEcCCcee
Q 007855 448 -----KSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNWLAAQSL------------------DNQILIYSTRERFQ 503 (587)
Q Consensus 448 -----g~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~~s~------------------dg~I~iwd~~~~~~ 503 (587)
|.|-|||.+..-. +..+ ..+.-....+.|.++|..++.+.. .-.+.+.|..++..
T Consensus 135 fd~~rGViGvYd~r~~fqrvgE~-~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l 213 (366)
T COG3490 135 FDPNRGVIGVYDAREGFQRVGEF-STHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL 213 (366)
T ss_pred CCCCCceEEEEecccccceeccc-ccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence 6799999885432 2222 235555677899999998887642 12234444444433
Q ss_pred ecccceecccccccceEEEEEcCCCCEEEEE
Q 007855 504 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg 534 (587)
+. +..+......-.+..++..+||..++.+
T Consensus 214 ie-kh~Lp~~l~~lSiRHld~g~dgtvwfgc 243 (366)
T COG3490 214 IE-KHTLPASLRQLSIRHLDIGRDGTVWFGC 243 (366)
T ss_pred hh-hccCchhhhhcceeeeeeCCCCcEEEEE
Confidence 32 2222222223345667777777665544
No 415
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.88 E-value=3.8 Score=46.63 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=52.0
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECC---------CCc--EE-EEee---------cCCcceEEEEccCCCCCcEE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQ--VI-RTFS---------TGKIPYVVKLNPDDDKQNIL 399 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~---------t~~--~i-~~~~---------~~~~~~~~~~~~~~~~~~~l 399 (587)
-.|..|.++++|++|+..|..|.+.+.=.+ .|+ .. +++. ....+..+.|+|.+..+..|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 358899999999999998886644432111 111 11 1221 12234568899988777889
Q ss_pred EEEeCCCcEEEEeCCCC
Q 007855 400 LAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 400 ~sg~~dg~I~iwD~~t~ 416 (587)
++-++|+.|++||+...
T Consensus 165 ~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEecCCEEEEEecCCC
Confidence 99999999999999754
No 416
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.78 E-value=0.093 Score=36.96 Aligned_cols=34 Identities=9% Similarity=0.268 Sum_probs=29.4
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
...|..++|+|...+||.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 455778999999999999999999999998 5544
No 417
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.48 E-value=5.6 Score=39.41 Aligned_cols=151 Identities=15% Similarity=0.189 Sum_probs=96.3
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc---EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 415 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t 415 (587)
-..-+.++.++. ++...+..+.-++|.|+.+.. .+..+...+..+++.++ +++..++..+.-+.+.|+.+
T Consensus 85 ~~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs-----Gn~aYVadlddgfLivdvsd 157 (370)
T COG5276 85 ARDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS-----GNYAYVADLDDGFLIVDVSD 157 (370)
T ss_pred hhhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec-----CCEEEEeeccCcEEEEECCC
Confidence 345567777764 477777788889999998754 33334444444444443 35788888777788888875
Q ss_pred C---cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc-ceeEEEEeCCCCEEEEEECCC
Q 007855 416 K---EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-SMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 416 ~---~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~i~~i~~sp~g~~l~~~s~dg 491 (587)
. .+...+......-..++.+ |++-..+..|+-+.|-|+..+.....+..-... .+.++..+++-.+++... -
T Consensus 158 pssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--e 233 (370)
T COG5276 158 PSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--E 233 (370)
T ss_pred CCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--c
Confidence 4 3444555455555667776 778888889999999999876544444322233 677777777665555543 3
Q ss_pred eEEEEEcCC
Q 007855 492 QILIYSTRE 500 (587)
Q Consensus 492 ~I~iwd~~~ 500 (587)
-+.+-|..+
T Consensus 234 gvlivd~s~ 242 (370)
T COG5276 234 GVLIVDVSG 242 (370)
T ss_pred ceEEEecCC
Confidence 355555544
No 418
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.46 E-value=0.46 Score=49.98 Aligned_cols=145 Identities=17% Similarity=0.195 Sum_probs=95.0
Q ss_pred CCCeEE-EEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCC----cEEEEEeCCCcEEEEeCCCCc-EEE--EE
Q 007855 351 DGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQ----NILLAGMSDKKIVQWDMNTKE-ITQ--EY 422 (587)
Q Consensus 351 dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~----~~l~sg~~dg~I~iwD~~t~~-~~~--~~ 422 (587)
+..+|+ .++.-..+.-.|++.|+.+..+..+... ++.+.|...-+ ..-++|-++..|.-.|.+-.. .+. ..
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~es 556 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVES 556 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeee
Confidence 444444 4555567788899999999999888776 67776653211 225677788888888877432 111 11
Q ss_pred cc--CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 423 DQ--HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 423 ~~--h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
+. .....+|+.-. .+.+++++|..|-|++||- .+...+.........|..+....+|+++++.| ...|.+.|++
T Consensus 557 KdY~tKn~Fss~~tT-esGyIa~as~kGDirLyDR-ig~rAKtalP~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 557 KDYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDR-IGKRAKTALPGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred hhccccccccccccc-cCceEEEecCCCceeeehh-hcchhhhcCcccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 11 11222333333 3458999999999999994 33334444445677899999999999988877 4567777754
No 419
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.30 E-value=3.2 Score=39.34 Aligned_cols=142 Identities=16% Similarity=0.238 Sum_probs=81.6
Q ss_pred EEEEeCCCcEEEEeCCC--CcEEEEEccCCCCeeEEEEecCCCEEEEEECCC------CEEEE-ECCC------Ce----
Q 007855 399 LLAGMSDKKIVQWDMNT--KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK------SLRVW-EFGI------PV---- 459 (587)
Q Consensus 399 l~sg~~dg~I~iwD~~t--~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg------~I~iw-d~~~------~~---- 459 (587)
|+.+.....|.+|++.. .+....+. --+.|..+.++..|++|++--.+. .+|+| +++. +.
T Consensus 31 Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRi 109 (215)
T PF14761_consen 31 LFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRI 109 (215)
T ss_pred EEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEE
Confidence 44446778899999983 34556665 348899999999999999864322 45664 2211 11
Q ss_pred ---------------EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee-eccc------ceeccccccc
Q 007855 460 ---------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-LNKK------KRFAGHIVAG 517 (587)
Q Consensus 460 ---------------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~-~~~~------~~~~~~~~~~ 517 (587)
.+..+..|...+..+++..|...-|++|+ ++.+.+|.+..... .... ..+-.+....
T Consensus 110 aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~~ 188 (215)
T PF14761_consen 110 AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDNF 188 (215)
T ss_pred cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEechhhhhheecCc
Confidence 12222334555677888888655566655 67789998764432 1111 1111122222
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
....+++ .+.|+|..+.. .++++.+
T Consensus 189 ~p~~v~i--c~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 189 KPTQVAI--CEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred eEEEEEE--EeeEEEEecCC-EEEEEEE
Confidence 2334444 35677776644 5555543
No 420
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.25 E-value=3 Score=39.20 Aligned_cols=176 Identities=11% Similarity=-0.015 Sum_probs=94.3
Q ss_pred cEEEEEeC--CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-EEEEEECCCCEEEEECCCCeEEEEeecCCCccee
Q 007855 397 NILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 473 (587)
Q Consensus 397 ~~l~sg~~--dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~ 473 (587)
+++.+.+. ...|++||+.+++.+.+-.-....+..=-...-+. .....-.+|.-.++|.++.+++..+.- .+.-.
T Consensus 57 ~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y--~GeGW 134 (262)
T COG3823 57 HILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY--EGEGW 134 (262)
T ss_pred EEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc--CCcce
Confidence 55665554 35799999999987765432211221111111122 233344678888899888777766632 22333
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce-ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 474 ~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
.++ .++.-|+.+.....++.-|..+......... ..+.. -..+..+.|- +|...|-.-.+..|...+..+|+.+.
T Consensus 135 gLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~p-v~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~ 210 (262)
T COG3823 135 GLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVP-VSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVA 210 (262)
T ss_pred eee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCee-cccccceeee-ccEEEEeeeeecceEEEcCCCCcEEE
Confidence 333 4555677766666666666544322221111 11111 1112222221 45555544445556666667776655
Q ss_pred EEe------------cCCCCEEEEEEcCCCCCEEEEEE
Q 007855 553 TLK------------CHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 553 ~l~------------~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
.+. .|....+++++.|+.+++++||-
T Consensus 211 widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTGK 248 (262)
T COG3823 211 WIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITGK 248 (262)
T ss_pred EEEccCCchhcCccccccccccceeecCcCCeEEEecC
Confidence 443 24567899999997667777763
No 421
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.20 E-value=1.3 Score=48.99 Aligned_cols=99 Identities=11% Similarity=0.193 Sum_probs=69.0
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEc-cCCCCeeEEEEe--cCCCEEEEEECCCCEEEEECC---------CCeEEEEe-
Q 007855 398 ILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFV--DNNRRFVTSSDDKSLRVWEFG---------IPVVIKYI- 464 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~~~~~~~-~h~~~I~~i~~s--p~~~~l~s~s~Dg~I~iwd~~---------~~~~~~~~- 464 (587)
..++......+.|||.+.+....+-. ...+.|.++.|. |+++.+++.+-...|.+|.-. .-..++.+
T Consensus 43 ~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~ 122 (631)
T PF12234_consen 43 IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKID 122 (631)
T ss_pred EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEE
Confidence 44445556689999999887544322 357889999997 788999999999999998642 11233333
Q ss_pred -ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 465 -SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 465 -~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
.....++|...+|.++|.+++.+ ++++.|++-
T Consensus 123 i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 123 ISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred eecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 22244789999999999665544 577888873
No 422
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.17 E-value=0.15 Score=35.98 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=29.9
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
...|.+++|+|...+||.++.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 5543
No 423
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=94.01 E-value=2.1 Score=44.85 Aligned_cols=146 Identities=11% Similarity=0.070 Sum_probs=76.7
Q ss_pred CCeeEEEEecCCCEEEEEE-----------CCC-CEEEEECCC--Ce--EEEEeecCCCcceeEEEEeCCCCEEEEEECC
Q 007855 427 GAVNTITFVDNNRRFVTSS-----------DDK-SLRVWEFGI--PV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLD 490 (587)
Q Consensus 427 ~~I~~i~~sp~~~~l~s~s-----------~Dg-~I~iwd~~~--~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d 490 (587)
.....|+|.++|+++++.. ..+ .|.+++-.. ++ ....+.. .......+++.+++ |++++..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~l~~p~Gi~~~~~G--lyV~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-ELSMVTGLAVAVGG--VYVATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-CCCCccceeEecCC--EEEeCCC
Confidence 4566788888888776653 223 676665432 22 2223322 23355789999888 4444444
Q ss_pred CeEEEE-EcCCc-----eeecccceecccc--cccceEEEEEcCCCCEEEEEcCC-------------------CcEEEE
Q 007855 491 NQILIY-STRER-----FQLNKKKRFAGHI--VAGYACQVNFSPDGRFVMSGDGE-------------------GKCWFW 543 (587)
Q Consensus 491 g~I~iw-d~~~~-----~~~~~~~~~~~~~--~~~~i~~l~~spdg~~L~sgs~d-------------------G~I~vw 543 (587)
.|..| +.... ........+.... .......++|.|||.+.++-+.. |.|.-+
T Consensus 91 -~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 91 -DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred -eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 35444 44321 1111111222110 12335569999999876654421 446666
Q ss_pred eCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 544 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 544 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
+..+++....-.++ .....++|++ .+.++++-.
T Consensus 170 ~pdg~~~e~~a~G~-rnp~Gl~~d~-~G~l~~tdn 202 (367)
T TIGR02604 170 NPDGGKLRVVAHGF-QNPYGHSVDS-WGDVFFCDN 202 (367)
T ss_pred ecCCCeEEEEecCc-CCCccceECC-CCCEEEEcc
Confidence 65555433222333 3357899999 666666544
No 424
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.83 E-value=0.18 Score=56.18 Aligned_cols=159 Identities=17% Similarity=0.190 Sum_probs=90.3
Q ss_pred ccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCC------CeEEEEeecCCCcceeEEEEeC---CCCEEEEEECCCe
Q 007855 423 DQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQ 492 (587)
Q Consensus 423 ~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~i~~i~~sp---~g~~l~~~s~dg~ 492 (587)
++..+.|-.|.|-. +...+. -.-|.+.||++.. .........+....+.-+.|.| +.-++.++-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 35566676676642 111111 2336788998753 2233333444555556666665 6677888888888
Q ss_pred EEEEEcCCceeecccceeccccc---------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-----CCeeEEEEecCC
Q 007855 493 ILIYSTRERFQLNKKKRFAGHIV---------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLKCHE 558 (587)
Q Consensus 493 I~iwd~~~~~~~~~~~~~~~~~~---------~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~-----t~~~~~~l~~h~ 558 (587)
|++........ ..+.+|.. .+++.--.+||||..++..+.||.+.+|.+. .-.++..++.|.
T Consensus 207 i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 207 IRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCC
Confidence 88876644321 22333311 2233334589999999999999998888753 335566677777
Q ss_pred C-CEEEEEEcCCCC--------CEEEEEEC-CCcEEEcC
Q 007855 559 G-VCIGCEWHPLEQ--------SKVATCGW-DGLIKYWD 587 (587)
Q Consensus 559 ~-~V~~v~~sp~~~--------~~l~s~g~-DG~I~iWD 587 (587)
+ +-.|..|+.+.. .++++++. ..-+++|.
T Consensus 283 ~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 283 KHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred CCCceeeeeccccccCCccceeEEEEecccCCcceeEee
Confidence 3 333333443211 14555554 34477773
No 425
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.75 E-value=10 Score=43.34 Aligned_cols=74 Identities=14% Similarity=0.169 Sum_probs=52.1
Q ss_pred CCeeEEEEecCCCEEEEEECCCCEEEEECCC----------C-e--EEEEe-------ecCCCcceeEEEEeCC---CCE
Q 007855 427 GAVNTITFVDNNRRFVTSSDDKSLRVWEFGI----------P-V--VIKYI-------SEPHMHSMPSISLHPN---TNW 483 (587)
Q Consensus 427 ~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~----------~-~--~~~~~-------~~~~~~~i~~i~~sp~---g~~ 483 (587)
-.|..|.++++|..++..|..| |.|..+-. + . ..+.+ .......|..+.|||. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4688899999999999988865 44444421 0 1 11111 1123456889999996 588
Q ss_pred EEEEECCCeEEEEEcCCc
Q 007855 484 LAAQSLDNQILIYSTRER 501 (587)
Q Consensus 484 l~~~s~dg~I~iwd~~~~ 501 (587)
|++-+.|+.|++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 999999999999998654
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.74 E-value=2.8 Score=46.52 Aligned_cols=195 Identities=14% Similarity=0.159 Sum_probs=100.3
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
-++..+|..+|..-.-+. +.--.|+|+++ .|.++..+.-....+..+.|+.+. .|++...+|++.||++- |..+
T Consensus 43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~--sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~-ge~i 116 (829)
T KOG2280|consen 43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI--SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLL-GEFI 116 (829)
T ss_pred cCCceEEEeccccccccc--ccceeEEEEec--cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecc-hhhh
Confidence 345556666664111222 34456899997 677776665555588899999665 57777899999999985 3333
Q ss_pred EEeecC------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc---CCCCeeEEEEecCCCEE-EEEE
Q 007855 376 RTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---HLGAVNTITFVDNNRRF-VTSS 445 (587)
Q Consensus 376 ~~~~~~------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~---h~~~I~~i~~sp~~~~l-~s~s 445 (587)
..+..+ ....|..|. ++ +++-..+|.+.+..-........+.. ...+-+|-+..+++... +.-.
T Consensus 117 e~~svg~e~~~~~I~ec~~f~----~G--Vavlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~ 190 (829)
T KOG2280|consen 117 ESNSVGFESQMSDIVECRFFH----NG--VAVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLD 190 (829)
T ss_pred cccccccccccCceeEEEEec----Cc--eEEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEe
Confidence 332221 111122222 11 44445556665543322222222221 11111233333332111 0000
Q ss_pred CCCC--EEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee
Q 007855 446 DDKS--LRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 446 ~Dg~--I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~ 503 (587)
-+-. ..++-.... .....+.. ....+..++++|+.++|+.-...|.|.+-+......
T Consensus 191 v~~~v~~~~~q~~~~~~q~~~~~~-~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 191 VDVAVGLHICQVEESRVQLHALSW-PNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred echhhhhcccceecccccccccCC-CCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 0100 011111111 11112211 235688899999999999999999999988765443
No 427
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.62 E-value=0.58 Score=53.74 Aligned_cols=127 Identities=10% Similarity=-0.007 Sum_probs=79.7
Q ss_pred CCCcEEEEeCCCCcEEE-----EEc------cCCCCeeEEEEecCCC-EEEEEECCCCEEEEECCCCeEEEEeecCCCcc
Q 007855 404 SDKKIVQWDMNTKEITQ-----EYD------QHLGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS 471 (587)
Q Consensus 404 ~dg~I~iwD~~t~~~~~-----~~~------~h~~~I~~i~~sp~~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 471 (587)
.+-.|..||+++-.... -+. .......++.|.|.-. ..+++..|+.|++..+........- .+....
T Consensus 122 ng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s-~p~t~~ 200 (1405)
T KOG3630|consen 122 NGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTS-FPVTNS 200 (1405)
T ss_pred CCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcc-cCcccc
Confidence 34478889987542211 111 1233456777877533 3667778899988876543322221 256678
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEE
Q 007855 472 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 533 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~s 533 (587)
.++++|+|.|+.+++|-..|++.-|...-.. ...+....... ...|.+|+|-....+|++
T Consensus 201 ~Tav~WSprGKQl~iG~nnGt~vQy~P~lei-k~~ip~Pp~~e-~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 201 QTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI-KSEIPEPPVEE-NYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred eeeEEeccccceeeEecCCCeEEEeecccce-eecccCCCcCC-CcceeEEEEecceeEEEE
Confidence 8999999999999999999999998654221 11111111111 467888999877777664
No 428
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=93.48 E-value=10 Score=38.81 Aligned_cols=104 Identities=8% Similarity=0.114 Sum_probs=51.5
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCcEE---EEEccCCCCe--eEEEEecCCCEEEEEEC-----CCCEEEEECCCCeEE
Q 007855 397 NILLAGMSD-----KKIVQWDMNTKEIT---QEYDQHLGAV--NTITFVDNNRRFVTSSD-----DKSLRVWEFGIPVVI 461 (587)
Q Consensus 397 ~~l~sg~~d-----g~I~iwD~~t~~~~---~~~~~h~~~I--~~i~~sp~~~~l~s~s~-----Dg~I~iwd~~~~~~~ 461 (587)
.+++.|+.+ ..+..||+.+.... ..+..-..+. .+++.. ++..++.|+. ...+..||+.+..-.
T Consensus 74 ~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~-~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~ 152 (323)
T TIGR03548 74 GIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK-DGTLYVGGGNRNGKPSNKSYLFNLETQEWF 152 (323)
T ss_pred EEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE-CCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence 466777654 35677787766531 2221111111 122222 5667777764 235788888765433
Q ss_pred EEeecCCCcceeEEEEeCCCCEEEEEECCC----eEEEEEcCCc
Q 007855 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDN----QILIYSTRER 501 (587)
Q Consensus 462 ~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg----~I~iwd~~~~ 501 (587)
..-..+........+...++++.+.|+.++ .+.+||..+.
T Consensus 153 ~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 153 ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence 221111111122222334566777776653 3567887653
No 429
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.37 E-value=1.5 Score=49.19 Aligned_cols=117 Identities=15% Similarity=0.189 Sum_probs=72.8
Q ss_pred cceeEEEEeC--CCCEEEEEECCCeEEEEEcCCce---------------eecccceecccccccceEEEEEc--CCCCE
Q 007855 470 HSMPSISLHP--NTNWLAAQSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFS--PDGRF 530 (587)
Q Consensus 470 ~~i~~i~~sp--~g~~l~~~s~dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~i~~l~~s--pdg~~ 530 (587)
+.|..|.+.. +...|+++..||.|.+|.+..-. .......+.-. ....++.++++ ...++
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rl 179 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRL 179 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceE
Confidence 3455554433 45688999999999999753210 00000111111 23467788888 88889
Q ss_pred EEEEcCCCcEEEEeCCCC--eeEE-EEecCCCCEEEEEEcCCC--CC---EEEEEECCCcEEEcC
Q 007855 531 VMSGDGEGKCWFWDWKSC--KVFR-TLKCHEGVCIGCEWHPLE--QS---KVATCGWDGLIKYWD 587 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t~--~~~~-~l~~h~~~V~~v~~sp~~--~~---~l~s~g~DG~I~iWD 587 (587)
||+++....|.||-.... +... .-..|...|-+|.|.+.+ .. .|++++-.|.+.+|+
T Consensus 180 IAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 180 IAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred EEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 999998888888765432 1111 111255568888888754 22 788899999988864
No 430
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=93.35 E-value=3.1 Score=44.97 Aligned_cols=154 Identities=11% Similarity=0.079 Sum_probs=90.8
Q ss_pred CCceeeEEEecCCCeEE-EEe--CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCc-EEEEEeCCCcEEEEeCC-
Q 007855 340 SKAVRDISFCNDGTKFL-TAS--YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKIVQWDMN- 414 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~-s~s--~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~I~iwD~~- 414 (587)
-.+|..++|. ||+.++ +.- .+|.+++=| ...+..|. ..+.+.|.|...... .+++......|.+|.+.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqFE---hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQFE---HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC---ccEeeccc---eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3478899997 555444 332 233333322 22333342 344566766543322 57777778899999875
Q ss_pred ----CCcEEEEEccC---CC--CeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEE
Q 007855 415 ----TKEITQEYDQH---LG--AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 485 (587)
Q Consensus 415 ----t~~~~~~~~~h---~~--~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 485 (587)
+++.+.....+ .- --..+.|+|....|++-.....-.+++++.............+-|.|.+|.++|+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 22332222111 11 1356789999988877766655556666544333333335677899999999999877
Q ss_pred EEECC-CeEEEEEcCC
Q 007855 486 AQSLD-NQILIYSTRE 500 (587)
Q Consensus 486 ~~s~d-g~I~iwd~~~ 500 (587)
++-.. =.-+|||-..
T Consensus 172 VAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEeCCeEEEEEecCch
Confidence 76433 3457887543
No 431
>PHA02790 Kelch-like protein; Provisional
Probab=93.26 E-value=6.8 Score=42.68 Aligned_cols=142 Identities=8% Similarity=-0.061 Sum_probs=68.6
Q ss_pred CCCeEEEEeCC-----CeEEEEECCCCcEEEEeecCCcc--eEEEEccCCCCCcEEEEEeCC--CcEEEEeCCCCcEEEE
Q 007855 351 DGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQE 421 (587)
Q Consensus 351 dg~~l~s~s~D-----g~I~vWd~~t~~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~d--g~I~iwD~~t~~~~~~ 421 (587)
++..+++|+.+ ..+..||..++.....-...... .... .. ++.+.++|+.+ ..+..||..+++....
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~---~~~iYviGG~~~~~sve~ydp~~n~W~~~ 346 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PA---NNKLYVVGGLPNPTSVERWFHGDAAWVNM 346 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EE---CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence 34555666654 25667888776544332222111 1121 12 23567777753 4578888776643321
Q ss_pred EccCCCCeeEEEEecCCCEEEEEECCC---CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 422 YDQHLGAVNTITFVDNNRRFVTSSDDK---SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 422 ~~~h~~~I~~i~~sp~~~~l~s~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
-.-...........-+++..+.|+.++ .+..||..+..-...-..+....-.+++ .-++...+.| |.+.+||.
T Consensus 347 ~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~-~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 347 PSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCAL-VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEE-EECCEEEEEC---CceEEecC
Confidence 111111111112223677778887654 4678887765433221111111111222 2355555555 35677887
Q ss_pred CC
Q 007855 499 RE 500 (587)
Q Consensus 499 ~~ 500 (587)
.+
T Consensus 423 ~~ 424 (480)
T PHA02790 423 SS 424 (480)
T ss_pred CC
Confidence 54
No 432
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=93.18 E-value=12 Score=38.64 Aligned_cols=233 Identities=16% Similarity=0.231 Sum_probs=112.8
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCee---eEEE----cccCCceeeEEEecC---CCeEE-EEeCC------
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC---MRTY----MGHSKAVRDISFCND---GTKFL-TASYD------ 361 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~---~~~~----~~h~~~V~~l~fs~d---g~~l~-s~s~D------ 361 (587)
-++|+|.|+ +.+|++ ...|.|++++. .+.. +..+ .........++|+|+ ..+|. +.+..
T Consensus 4 P~~~a~~pd-G~l~v~-e~~G~i~~~~~--~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~ 79 (331)
T PF07995_consen 4 PRSMAFLPD-GRLLVA-ERSGRIWVVDK--DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGD 79 (331)
T ss_dssp EEEEEEETT-SCEEEE-ETTTEEEEEET--TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSS
T ss_pred ceEEEEeCC-CcEEEE-eCCceEEEEeC--CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCC
Confidence 578999999 877765 55999999994 3332 3222 234557899999994 23443 33321
Q ss_pred --CeEEEEECCCC-------cEE-EEee----cCCcceEEEEccCCCCCcEEEEEeCCC-------------cEEEEeCC
Q 007855 362 --KNIKYWDTETG-------QVI-RTFS----TGKIPYVVKLNPDDDKQNILLAGMSDK-------------KIVQWDMN 414 (587)
Q Consensus 362 --g~I~vWd~~t~-------~~i-~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~dg-------------~I~iwD~~ 414 (587)
..|.-|....+ +.+ .... ..|....+.|.|++ .++++.+..+ .|.-.+..
T Consensus 80 ~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG---~LYvs~G~~~~~~~~~~~~~~~G~ilri~~d 156 (331)
T PF07995_consen 80 NDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG---KLYVSVGDGGNDDNAQDPNSLRGKILRIDPD 156 (331)
T ss_dssp EEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS---EEEEEEB-TTTGGGGCSTTSSTTEEEEEETT
T ss_pred cceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC---cEEEEeCCCCCcccccccccccceEEEeccc
Confidence 23444444333 111 1222 23445567777754 3444443322 23333322
Q ss_pred CCc------------EEEEEccCCCCeeEEEEecC-CCEEEEE-ECCCCEEEEECCCC----------------------
Q 007855 415 TKE------------ITQEYDQHLGAVNTITFVDN-NRRFVTS-SDDKSLRVWEFGIP---------------------- 458 (587)
Q Consensus 415 t~~------------~~~~~~~h~~~I~~i~~sp~-~~~l~s~-s~Dg~I~iwd~~~~---------------------- 458 (587)
..- ....+..-......++|.|. +.++++= +.+..=.|.-+..+
T Consensus 157 G~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~ 236 (331)
T PF07995_consen 157 GSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDA 236 (331)
T ss_dssp SSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTG
T ss_pred CcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccc
Confidence 110 00000001122457899998 5544332 22222222211110
Q ss_pred -------eEEEEeecCCCcceeEEEEeC-------CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEE
Q 007855 459 -------VVIKYISEPHMHSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 459 -------~~~~~~~~~~~~~i~~i~~sp-------~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
.+...+ .+...+..+.|.. .+.+|++.-..+.|....+.....+.....+... ....+..+++
T Consensus 237 ~~~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~r~~~v~~ 313 (331)
T PF07995_consen 237 PSCPGFVPPVFAY--PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGG-FGGRPRDVAQ 313 (331)
T ss_dssp SS-TTS---SEEE--TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTT-SSS-EEEEEE
T ss_pred cCCCCcCccceee--cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEcccc-CCCCceEEEE
Confidence 011111 2334566666654 3456666666678888887644333333332222 2346888999
Q ss_pred cCCCCEEEEEcCCCcEE
Q 007855 525 SPDGRFVMSGDGEGKCW 541 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~ 541 (587)
.|||.+.++-+.+|.|+
T Consensus 314 ~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 314 GPDGALYVSDDSDGKIY 330 (331)
T ss_dssp ETTSEEEEEE-TTTTEE
T ss_pred cCCCeEEEEECCCCeEe
Confidence 99999988888888875
No 433
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=92.94 E-value=4.4 Score=45.51 Aligned_cols=102 Identities=15% Similarity=0.258 Sum_probs=70.9
Q ss_pred CcEEEEEeCCCcEEEEeCCC-------C----c---------EEEEEccCCCCeeEEEEe--cCCCEEEEEECCCCEEEE
Q 007855 396 QNILLAGMSDKKIVQWDMNT-------K----E---------ITQEYDQHLGAVNTITFV--DNNRRFVTSSDDKSLRVW 453 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t-------~----~---------~~~~~~~h~~~I~~i~~s--p~~~~l~s~s~Dg~I~iw 453 (587)
..+|+++..||.|.+|.+.+ . . +...+ .-...+.+++++ ...++||+++....|.||
T Consensus 114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~-~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL-RVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe-ecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 36899999999999997631 0 0 01111 133578899998 788888888888888888
Q ss_pred ECCCC--eEEEEeecCCCcceeEEEEeCCC------CEEEEEECCCeEEEEEc
Q 007855 454 EFGIP--VVIKYISEPHMHSMPSISLHPNT------NWLAAQSLDNQILIYST 498 (587)
Q Consensus 454 d~~~~--~~~~~~~~~~~~~i~~i~~sp~g------~~l~~~s~dg~I~iwd~ 498 (587)
-+... +....-...+.+.|++|+|-++. .+|++++-.|.+.+|++
T Consensus 193 af~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 193 AFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 66542 11111122467789999998753 27888999999999887
No 434
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=92.87 E-value=2.6 Score=46.79 Aligned_cols=117 Identities=14% Similarity=0.202 Sum_probs=73.7
Q ss_pred CCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEe--CCCCEEEEEECCCeEEEEEcCCc--
Q 007855 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH--PNTNWLAAQSLDNQILIYSTRER-- 501 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~s--p~g~~l~~~s~dg~I~iwd~~~~-- 501 (587)
...+.-+.-+.-++..++-+....+.|||.+...............|..+.|. |+++.+++.+..+.|.+|.-...
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 34445555555555555555556799999998875544443557789999885 58889999999999999864211
Q ss_pred ----eeecccce--ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 502 ----FQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 502 ----~~~~~~~~--~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
.....++. +..+ ....|.+..|.++|.+++..+ ..++|+|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~-T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSH-TPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecC-CCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 11111111 1222 234567889999997665443 35777763
No 435
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=92.63 E-value=12 Score=37.25 Aligned_cols=273 Identities=10% Similarity=0.068 Sum_probs=144.7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccC-CceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ- 373 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~- 373 (587)
.+-+..++++ +++...+..+.-++|.|+....++...-.-.. +--.+ |.-.|++...+..|.-+.+.|+.+.+
T Consensus 86 ~~l~~Dv~vs---e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyayg--v~vsGn~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS---EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYG--VYVSGNYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec---ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEE--EEecCCEEEEeeccCcEEEEECCCCCC
Confidence 3456777776 45777788888899999954444332211111 22233 34468899888877777788886543
Q ss_pred --EEEEeecCCcc-eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc---EEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 374 --VIRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 374 --~i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~---~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+..++...... .-+.++ +++...+..|+-+.+.|+.... ++..+. ....+.++..+++.-+++.. +
T Consensus 161 P~lagrya~~~~d~~~v~IS-----Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~sv~vsdnr~y~vvy--~ 232 (370)
T COG5276 161 PQLAGRYALPGGDTHDVAIS-----GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYSVSVSDNRAYLVVY--D 232 (370)
T ss_pred ceeeeeeccCCCCceeEEEe-----cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEEEEecCCeeEEEEc--c
Confidence 33333322221 222222 3567788899999999987653 333332 22367777777665444443 3
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEE-EEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSI-SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i-~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
--+.+-|...+.....+..-....+.++ .+.-.+++......+.-+.+.|+.+.........+... ......+..
T Consensus 233 egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~--g~~a~gi~a-- 308 (370)
T COG5276 233 EGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTA--GYQAAGIRA-- 308 (370)
T ss_pred cceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCC--CccccceEE--
Confidence 4577778777664433322222222222 23335667777766766777777653222111111100 001112222
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
-+.++..+..+ ...+-+....+......+-...+.+++.+- ..+.+.+..++|-+.||+
T Consensus 309 y~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~-~~q~~y~~d~~~gl~i~~ 367 (370)
T COG5276 309 YGNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSV-DTQIIYSTDYNGGLSIIE 367 (370)
T ss_pred ecCeeEeccCC-ceEEEeCCChhhcccccCcceEeeecceEE-EeeEEEEeecCCCEEEEE
Confidence 24455555544 444455443332222222222233333333 233788888899898886
No 436
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=92.42 E-value=5.7 Score=34.71 Aligned_cols=118 Identities=13% Similarity=0.064 Sum_probs=70.4
Q ss_pred EEEEEccCCCcEEEEEeCCCeEEEEecCCCC-------eeeEEEcccCCceeeEEEec-----CCCeEEEEeCCCeEEEE
Q 007855 300 SAIRFFPKYGHLILSAGMDTKVKIWDVFNSG-------KCMRTYMGHSKAVRDISFCN-----DGTKFLTASYDKNIKYW 367 (587)
Q Consensus 300 ~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~-------~~~~~~~~h~~~V~~l~fs~-----dg~~l~s~s~Dg~I~vW 367 (587)
+.-+|... ...|+.++.-|+|.|.+..... ..++.+ .-...|++|+-.+ ....|+.|+ ..+|..|
T Consensus 2 aiGkfDG~-~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L-Nin~~italaaG~l~~~~~~D~LliGt-~t~llaY 78 (136)
T PF14781_consen 2 AIGKFDGV-HPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL-NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAY 78 (136)
T ss_pred eEEEeCCC-ceeEEEEecCCEEEEECCCccccccccccCceeEE-ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEE
Confidence 34456655 5578888888999999873221 122333 3556788886544 234566665 4789999
Q ss_pred ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE
Q 007855 368 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 420 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~ 420 (587)
|+....-+..-.......++.+-.......-++..+.+..|.-||....+...
T Consensus 79 DV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 79 DVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred EcccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 99988766555555555555543333322334444445677777766555443
No 437
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.35 E-value=14 Score=37.45 Aligned_cols=230 Identities=14% Similarity=0.150 Sum_probs=102.3
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee--cCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS--TGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 414 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~--~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~ 414 (587)
-...+.+|.|.....-+++|. .+.| +--.+.|+.-.... ... ......+...+. ..+++|. .+ +.+....
T Consensus 15 t~~~l~dV~F~d~~~G~~VG~-~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~--~g~ivG~-~g-~ll~T~D 88 (302)
T PF14870_consen 15 TDKPLLDVAFVDPNHGWAVGA-YGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN--EGWIVGE-PG-LLLHTTD 88 (302)
T ss_dssp -SS-EEEEEESSSS-EEEEET-TTEE-EEESSTTSS-EE-----S-----EEEEEEEETT--EEEEEEE-TT-EEEEESS
T ss_pred CCCceEEEEEecCCEEEEEec-CCEE-EEECCCCccccccccCCCccceeeEEEEEecCC--ceEEEcC-Cc-eEEEecC
Confidence 456899999996555556554 4543 22233333221111 111 112222222222 3455553 34 4444444
Q ss_pred CCcEEEEEc---cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC
Q 007855 415 TKEITQEYD---QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 415 t~~~~~~~~---~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg 491 (587)
.++.-..+. .-.+....+....++.. ...+..|.|+. ..+.+..-+.+.......+..+..+++|.++++++...
T Consensus 89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~-~l~~~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~ 166 (302)
T PF14870_consen 89 GGKTWERVPLSSKLPGSPFGITALGDGSA-ELAGDRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN 166 (302)
T ss_dssp TTSS-EE----TT-SS-EEEEEEEETTEE-EEEETT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred CCCCcEEeecCCCCCCCeeEEEEcCCCcE-EEEcCCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence 443322221 12234445555555533 33445555433 23334444444445667888899999999999987666
Q ss_pred eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC-CCCeeEEE----EecCCCCEEEEEE
Q 007855 492 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW-KSCKVFRT----LKCHEGVCIGCEW 566 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~-~t~~~~~~----l~~h~~~V~~v~~ 566 (587)
.+.-|+--.. ...... ......+..+.|+|++.+.+.+ ..|.|++=+. ........ +..-.-.+..++|
T Consensus 167 ~~~s~~~G~~-~w~~~~----r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 167 FYSSWDPGQT-TWQPHN----RNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp EEEEE-TT-S-S-EEEE------SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred EEEEecCCCc-cceEEc----cCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEe
Confidence 6667764321 111111 1124668889999998876655 7888888772 22222222 1112234889999
Q ss_pred cCCCCCEEEEEECCCcEE
Q 007855 567 HPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 567 sp~~~~~l~s~g~DG~I~ 584 (587)
.+ .....++|+ .|.|.
T Consensus 241 ~~-~~~~wa~gg-~G~l~ 256 (302)
T PF14870_consen 241 RP-PNEIWAVGG-SGTLL 256 (302)
T ss_dssp SS-SS-EEEEES-TT-EE
T ss_pred cC-CCCEEEEeC-CccEE
Confidence 98 555555444 55543
No 438
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.34 E-value=4.9 Score=44.68 Aligned_cols=194 Identities=12% Similarity=0.228 Sum_probs=94.6
Q ss_pred CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE---EEccCCCCeeEEEEecCC
Q 007855 362 KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ---EYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~---~~~~h~~~I~~i~~sp~~ 438 (587)
-.|+|+++ +|+.+..+.-.+. ..+.+.++.. ..|++...+|.+++|++-...... -+......|..+.+..+|
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~G 139 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWSDD--EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNG 139 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-CeeeecccCC--ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCc
Confidence 46788876 4666655543332 3344444333 458889999999999985432211 012233445555555555
Q ss_pred CEEEEEECCCCEEEE-ECCCCeEEEEeecCCCcce--eEEEEeCCCC---EEEEEE-CCCeEEEEEcCCceeecccceec
Q 007855 439 RRFVTSSDDKSLRVW-EFGIPVVIKYISEPHMHSM--PSISLHPNTN---WLAAQS-LDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iw-d~~~~~~~~~~~~~~~~~i--~~i~~sp~g~---~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
-.++ ..+|.+.+- +...+.. ........... .|.+..+++. .++-.. ..+ ..++-..... ... ..+.
T Consensus 140 Vavl--t~~g~v~~i~~~~~~~~-~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~-~q~-~~~~ 213 (829)
T KOG2280|consen 140 VAVL--TVSGQVILINGVEEPKL-RKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVG-LHICQVEESR-VQL-HALS 213 (829)
T ss_pred eEEE--ecCCcEEEEcCCCcchh-hhCCCCCCccCCCcceeEecCCCcceeEEeechhhh-hcccceeccc-ccc-cccC
Confidence 3333 334444443 3332222 22222111122 2222222211 111111 000 0111111110 000 0011
Q ss_pred ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcC
Q 007855 512 GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHP 568 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp 568 (587)
.....+..+..||+.++|+--...|.|.+-+....+.+..+.. |.- -..++|..
T Consensus 214 --~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~-p~qm~Wcg 269 (829)
T KOG2280|consen 214 --WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDP-PKQMAWCG 269 (829)
T ss_pred --CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCc-hHhceeec
Confidence 0124466799999999999999999999999888777777663 322 23556654
No 439
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=92.28 E-value=14 Score=37.25 Aligned_cols=170 Identities=12% Similarity=0.178 Sum_probs=90.4
Q ss_pred eEEEEECCCCcEEEEeecCCcc-------eEEEEccCCC---CCcEEEEEeCCCcEEEEeCCCCcEEEEEccC-------
Q 007855 363 NIKYWDTETGQVIRTFSTGKIP-------YVVKLNPDDD---KQNILLAGMSDKKIVQWDMNTKEITQEYDQH------- 425 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~~-------~~~~~~~~~~---~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h------- 425 (587)
.|.+||+.+++.++++..+... ..+.+..... .....++=...+.|.++|+.+++..+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6889999999999888755332 1233333211 1234445555579999999998766655432
Q ss_pred ------------CCCeeEEEEec---CCCEEEEEECCCCEEEEECCC-----Ce---------EEEEeecCCCcceeEEE
Q 007855 426 ------------LGAVNTITFVD---NNRRFVTSSDDKSLRVWEFGI-----PV---------VIKYISEPHMHSMPSIS 476 (587)
Q Consensus 426 ------------~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~~~-----~~---------~~~~~~~~~~~~i~~i~ 476 (587)
...+..++.+| ++++|.-....+. .+|.+.+ .. .++.+.. .......++
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~-k~~~s~g~~ 192 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGD-KGSQSDGMA 192 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEEE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceeccc-cCCCCceEE
Confidence 12245555554 4455555443321 2333211 10 1111111 123567788
Q ss_pred EeCCCCEEEEEECCCeEEEEEcCCceeecccceec-ccccccceEEEEEcC--CCCEEEEE
Q 007855 477 LHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA-GHIVAGYACQVNFSP--DGRFVMSG 534 (587)
Q Consensus 477 ~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~i~~l~~sp--dg~~L~sg 534 (587)
++++|.++++--..+.|..|+............+. ....-.+...+.+.+ +|.+.+..
T Consensus 193 ~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 193 IDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp EETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred ECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 99999999999999999999987643222222221 111134566788887 66554443
No 440
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.11 E-value=14 Score=42.77 Aligned_cols=235 Identities=9% Similarity=0.040 Sum_probs=107.4
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeE--E------Ec--ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEe
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMR--T------YM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~--~------~~--~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~ 378 (587)
+..|..|+.+|.+.+|.+++...... . +. -+..+|..|...+.-..+++- .|+.|.++++.+-+.....
T Consensus 26 ~~~l~vGt~~G~L~lY~i~~~~~~~~~~~~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l-~dsqi~~~~l~~~~~~~~~ 104 (877)
T KOG2063|consen 26 GNHLYVGTRDGDLYLYSIYERGNPESVELVTETVKFEKEFSKKPINKLLVCASLELLLIL-SDSQIAVHKLPELEPVPSG 104 (877)
T ss_pred CCEEEEEcCCCcEEEEeccccccccchhhhcchhHHhhhhccchhHHHhhcchhcchhee-cCCcceeeecCcccccccc
Confidence 77899999999999999854432111 0 00 135677777766654444443 4677888887765542211
Q ss_pred ec--CCcceEEEEccCCCC-CcEEEEEeCCCc--EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEE
Q 007855 379 ST--GKIPYVVKLNPDDDK-QNILLAGMSDKK--IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453 (587)
Q Consensus 379 ~~--~~~~~~~~~~~~~~~-~~~l~sg~~dg~--I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iw 453 (587)
.. +....+....+...+ ..+.++...-.. ...|+-+.+.....--+-.....+++|. +..+.++-.+....+|
T Consensus 105 ~~~Kg~~~f~~~~~~~s~~~~~~~i~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~c~~~~~~~~ii~ 182 (877)
T KOG2063|consen 105 TRLKGASLFTIDLRPISTGPSVYEICLSVRKRLIRFFWNGRDGIVLVKELGFPDVPKARAWC--GHIVCLGLKKSYYIIN 182 (877)
T ss_pred cccccceeeccccccccCCcceEEEEeeccceEEEEEecCCCceEEEEecccccchhhhccc--ceeEEEeecceeEEEe
Confidence 11 111111111121111 122333332222 2334443343332222222223333332 3233333332233333
Q ss_pred ECCCCeEE--EEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEE
Q 007855 454 EFGIPVVI--KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV 531 (587)
Q Consensus 454 d~~~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L 531 (587)
.-.++... ..........-+.|+...++..|+.| .|+...+-|..+.........+.... ..+. -+..|+
T Consensus 183 ~~~~~~~~~~~~s~~~~~s~~P~I~~l~~~~~ll~~-kd~~gv~vd~~G~~~~~~~l~ws~~P-----~~v~--~~~PYl 254 (877)
T KOG2063|consen 183 NTSKGVGPNLFPSSMDNESRKPLIKSLSDQSELLLG-KDNIGVVVDLNGIIAQRGTLVWSEVP-----LSVV--VESPYL 254 (877)
T ss_pred cCCCccccceeeeccccccCCCeEEEecCCceEEEc-cCceEEEEecCCcccCCCceEecccc-----hhhc--ccCceE
Confidence 33332111 11111112333455555566566665 56666666654322111111111111 0111 145577
Q ss_pred EEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 532 MSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 532 ~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
++-+.. .|.||+..++.+++++.
T Consensus 255 Ia~~~~-~veI~s~~~~qlvQSI~ 277 (877)
T KOG2063|consen 255 IALLDR-SVEIRSKLDGQLVQSIT 277 (877)
T ss_pred EEEccc-cEEEEeccCHHHhhccc
Confidence 666554 99999999998888773
No 441
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=91.87 E-value=3.1 Score=44.10 Aligned_cols=140 Identities=15% Similarity=0.190 Sum_probs=87.0
Q ss_pred cEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC-------EEEEEECCCCEEEEECCCCe-EEEE--eec
Q 007855 397 NILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR-------RFVTSSDDKSLRVWEFGIPV-VIKY--ISE 466 (587)
Q Consensus 397 ~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~-------~l~s~s~Dg~I~iwd~~~~~-~~~~--~~~ 466 (587)
-++..|.....++-.|+..|+.+.++..|..- -+.|.|..+ .-++|-.+..|.-.|.+... .+.. ...
T Consensus 481 li~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esKd 558 (776)
T COG5167 481 LIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESKD 558 (776)
T ss_pred eEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeehh
Confidence 45566777788999999999999999877665 466666432 23445556666666765432 1111 111
Q ss_pred -CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 467 -PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 467 -~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
.......+..-. ...|+++++..|.|++||.-... ....+++. ...|..+..+.+|++|++.+.. .|.+-|+
T Consensus 559 Y~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~r---AKtalP~l--G~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 559 YKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGKR---AKTALPGL--GDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred ccccccccccccc-cCceEEEecCCCceeeehhhcch---hhhcCccc--ccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 111222233222 45699999999999999954321 12222222 3456678899999999887755 6777776
No 442
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.70 E-value=12 Score=35.43 Aligned_cols=172 Identities=15% Similarity=0.193 Sum_probs=94.9
Q ss_pred CcEEEEEeC--CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEeecCCcce
Q 007855 309 GHLILSAGM--DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGKIPY 385 (587)
Q Consensus 309 g~~L~sgs~--Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~ 385 (587)
++++.+.+. ...|++||+ .+++.+..-.-....+..=-...-|.++. -.-.+|.-.++|..+-+++..+.-....+
T Consensus 56 g~i~esTG~yg~S~ir~~~L-~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeGW 134 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDL-TTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEGW 134 (262)
T ss_pred CEEEEeccccccceeEEEec-cCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcce
Confidence 688888765 456999999 66766654332211221111111233333 23357888899999999998888776666
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE----Ecc-CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----YDQ-HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV 460 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~----~~~-h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~ 460 (587)
.++..- . + |+.+.....++.-|..+-....+ +.+ .-..++.+.|. +|...+-.-.+..|...+..+++.
T Consensus 135 gLt~d~--~--~-LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV 208 (262)
T COG3823 135 GLTSDD--K--N-LIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV 208 (262)
T ss_pred eeecCC--c--c-eEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence 554322 2 2 66666566777777765433222 221 11334455555 444444444444555556666655
Q ss_pred EEEeec-----------CCCcceeEEEEeCCCC-EEEEE
Q 007855 461 IKYISE-----------PHMHSMPSISLHPNTN-WLAAQ 487 (587)
Q Consensus 461 ~~~~~~-----------~~~~~i~~i~~sp~g~-~l~~~ 487 (587)
...+.. .+..-...+++.|++. ++++|
T Consensus 209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 544421 2334567788888774 44443
No 443
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.39 E-value=20 Score=37.40 Aligned_cols=144 Identities=13% Similarity=0.189 Sum_probs=77.3
Q ss_pred CCeEEEEEccCCCcEEEEEe-----------CCC-eEEEEecCC-CCe--eeEEEcccCCceeeEEEecCCCeEEEEeCC
Q 007855 297 KGVSAIRFFPKYGHLILSAG-----------MDT-KVKIWDVFN-SGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYD 361 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs-----------~Dg-~I~iWd~~~-~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D 361 (587)
.....|+|.++ |+++++-. ..+ .|.+++-.+ .++ ....+.......+.|+|.++| +++ ++..
T Consensus 14 ~~P~~ia~d~~-G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDER-GRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCC-CCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 34678899998 88777653 223 677775422 233 223444444556889999988 444 4444
Q ss_pred CeEEEEECCCC-----c--EE-EEeec-----CCcceEEEEccCCCCCcEEEEEeC-------------------CCcEE
Q 007855 362 KNIKYWDTETG-----Q--VI-RTFST-----GKIPYVVKLNPDDDKQNILLAGMS-------------------DKKIV 409 (587)
Q Consensus 362 g~I~vWd~~t~-----~--~i-~~~~~-----~~~~~~~~~~~~~~~~~~l~sg~~-------------------dg~I~ 409 (587)
..+++.|.... + .+ ..+.. ++....+.+.+++ .+.++-+. .|.|.
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG---~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~ 167 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG---WLYFNHGNTLASKVTRPGTSDESRQGLGGGLF 167 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC---CEEEecccCCCceeccCCCccCcccccCceEE
Confidence 43344455321 1 12 22322 2334456666643 33333221 14566
Q ss_pred EEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 410 QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 410 iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
.++..+++.. .+.........++|+++++++++-..+
T Consensus 168 r~~pdg~~~e-~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 168 RYNPDGGKLR-VVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred EEecCCCeEE-EEecCcCCCccceECCCCCEEEEccCC
Confidence 6666655433 232233446789999999887765433
No 444
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=91.28 E-value=0.96 Score=31.01 Aligned_cols=31 Identities=29% Similarity=0.363 Sum_probs=27.1
Q ss_pred CCeEEEEEccCCC--cEEEEEeCCCeEEEEecC
Q 007855 297 KGVSAIRFFPKYG--HLILSAGMDTKVKIWDVF 327 (587)
Q Consensus 297 ~~V~~l~~sp~~g--~~L~sgs~Dg~I~iWd~~ 327 (587)
++|.++.|+|..+ .+|+.+-.-|.|.|+|+.
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R 33 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTR 33 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcc
Confidence 4689999998756 799999999999999994
No 445
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=5.9 Score=42.22 Aligned_cols=96 Identities=10% Similarity=0.149 Sum_probs=54.3
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE 421 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~ 421 (587)
.|..+..++.|..++-++.+|.+..+=.+....-..+..+.....++..+-+. .|++.+
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~ftss------------------ 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTSS------------------ 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeeccC------------------
Confidence 46778888899998888888866654322222222333333222222222211 111111
Q ss_pred EccCCCCeeEEEEecCC---CEEEEEECCCCEEEEECCCCeEE
Q 007855 422 YDQHLGAVNTITFVDNN---RRFVTSSDDKSLRVWEFGIPVVI 461 (587)
Q Consensus 422 ~~~h~~~I~~i~~sp~~---~~l~s~s~Dg~I~iwd~~~~~~~ 461 (587)
..-.+..+.|+|+. ..|+.-+.|..||+|++.....+
T Consensus 164 ---~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~tel 203 (741)
T KOG4460|consen 164 ---TSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTEL 203 (741)
T ss_pred ---CceeeeeccccCCccCCceEEEEecCcEEEEEecCCcchh
Confidence 11234456777754 56777888999999998876655
No 446
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=90.80 E-value=23 Score=36.96 Aligned_cols=191 Identities=13% Similarity=0.129 Sum_probs=103.3
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEccc--CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEE
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 387 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~ 387 (587)
..++.+..+|.|.-.|. .++..+.....- ...+..-.+..+|+ |+.++.++.+..+|..+|+.+..+..... ...
T Consensus 69 g~v~~~~~~G~i~A~d~-~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~-~~~ 145 (370)
T COG1520 69 GTVYVGTRDGNIFALNP-DTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS-PYY 145 (370)
T ss_pred CeEEEecCCCcEEEEeC-CCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCC-eEE
Confidence 34555577787777777 555544433221 12333333333665 77788889999999999999998887761 111
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC---CeeEEEEecCCCEEEEEEC--CCCEEEEECCCCeEEE
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIK 462 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~---~I~~i~~sp~~~~l~s~s~--Dg~I~iwd~~~~~~~~ 462 (587)
.-.+. -....++.++.++.+...|..++.....+..... .+..--.. ....++.+.. ++.+.-.|...+....
T Consensus 146 ~~~~v-~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~vy~~~~~~~~~~~a~~~~~G~~~w 223 (370)
T COG1520 146 ASPPV-VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAI-ASGTVYVGSDGYDGILYALNAEDGTLKW 223 (370)
T ss_pred ecCcE-EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCcee-ecceEEEecCCCcceEEEEEccCCcEee
Confidence 11111 1112455555789999999999988766543221 11111111 2234455554 5566667776666554
Q ss_pred EeecCCC---cce---eEE---EEeCCCCEEEEEECCCeEEEEEcCCceeecc
Q 007855 463 YISEPHM---HSM---PSI---SLHPNTNWLAAQSLDNQILIYSTRERFQLNK 506 (587)
Q Consensus 463 ~~~~~~~---~~i---~~i---~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~ 506 (587)
.....+. ..+ ..+ .+.-+ .-++.++.++.+...+..++..+-.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~v~v~-~~~~~~~~~g~~~~l~~~~G~~~W~ 275 (370)
T COG1520 224 SQKVSQTIGRTAISTTPAVDGGPVYVD-GGVYAGSYGGKLLCLDADTGELIWS 275 (370)
T ss_pred eeeeecccCcccccccccccCceEEEC-CcEEEEecCCeEEEEEcCCCceEEE
Confidence 4211110 001 011 11112 2345666777788888877765533
No 447
>PLN02193 nitrile-specifier protein
Probab=90.75 E-value=28 Score=37.80 Aligned_cols=193 Identities=11% Similarity=0.093 Sum_probs=90.6
Q ss_pred CCCeEEEEeCC-------CeEEEEECCCCcEEEEeecCCcce----EEEEccCCCCCcEEEEEeCC-----CcEEEEeCC
Q 007855 351 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKIPY----VVKLNPDDDKQNILLAGMSD-----KKIVQWDMN 414 (587)
Q Consensus 351 dg~~l~s~s~D-------g~I~vWd~~t~~~i~~~~~~~~~~----~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~ 414 (587)
++..++.|+.+ ..+.+||+.+.+-...-..+..+. ..+.... +..+++.|+.+ ..+.+||+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~ 252 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT 252 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence 34555666643 247778887765442211111111 1111111 23567777654 368889998
Q ss_pred CCcEEEEEcc----CCCCeeEEEEecCCCEEEEEECCC-----CEEEEECCCCeEEEEeec---CCCcceeEEEEeCCCC
Q 007855 415 TKEITQEYDQ----HLGAVNTITFVDNNRRFVTSSDDK-----SLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTN 482 (587)
Q Consensus 415 t~~~~~~~~~----h~~~I~~i~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~---~~~~~i~~i~~sp~g~ 482 (587)
+.+-...-.. ....-.+++. -++++++.|+.++ .+..||+.+..-...... +....-..++.. +++
T Consensus 253 t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~-~gk 330 (470)
T PLN02193 253 TNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV-QGK 330 (470)
T ss_pred CCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE-CCc
Confidence 7654332111 1111122222 3566777776543 367788776543221110 011111122222 566
Q ss_pred EEEEEECC----CeEEEEEcCCceeecccceecc-cccccceEEEEEcCCCCEEEEEcCC--------------CcEEEE
Q 007855 483 WLAAQSLD----NQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGE--------------GKCWFW 543 (587)
Q Consensus 483 ~l~~~s~d----g~I~iwd~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdg~~L~sgs~d--------------G~I~vw 543 (587)
+++.++.+ ..|.+||+.+.. ......... .........+. -++++++.|+.. ..+.++
T Consensus 331 iyviGG~~g~~~~dv~~yD~~t~~-W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~ 407 (470)
T PLN02193 331 VWVVYGFNGCEVDDVHYYDPVQDK-WTQVETFGVRPSERSVFASAA--VGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL 407 (470)
T ss_pred EEEEECCCCCccCceEEEECCCCE-EEEeccCCCCCCCcceeEEEE--ECCEEEEECCccCCccccccCccceeccEEEE
Confidence 77766654 468899987642 222211100 10111111222 256677777743 247888
Q ss_pred eCCCCee
Q 007855 544 DWKSCKV 550 (587)
Q Consensus 544 d~~t~~~ 550 (587)
|..+.+-
T Consensus 408 D~~t~~W 414 (470)
T PLN02193 408 DTETLQW 414 (470)
T ss_pred EcCcCEE
Confidence 8877653
No 448
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=90.62 E-value=16 Score=37.56 Aligned_cols=149 Identities=14% Similarity=0.207 Sum_probs=86.0
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCC------EEEEECCCC----eEEE-----EeecCCCc-------ceeEEEEeCCCC
Q 007855 425 HLGAVNTITFVDNNRRFVTSSDDKS------LRVWEFGIP----VVIK-----YISEPHMH-------SMPSISLHPNTN 482 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s~Dg~------I~iwd~~~~----~~~~-----~~~~~~~~-------~i~~i~~sp~g~ 482 (587)
.-+.+..|.+.+++..+++.+++|. +..+.+... ..+. .+..+... ..-+|++.+++.
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 3467888999977778888888888 666665431 1111 11111111 234778877888
Q ss_pred EEEEEECC------CeEEEEEcCCceeeccc---cee-------cccccccceEEEEEcCCCCEEEEEcC-----CC---
Q 007855 483 WLAAQSLD------NQILIYSTRERFQLNKK---KRF-------AGHIVAGYACQVNFSPDGRFVMSGDG-----EG--- 538 (587)
Q Consensus 483 ~l~~~s~d------g~I~iwd~~~~~~~~~~---~~~-------~~~~~~~~i~~l~~spdg~~L~sgs~-----dG--- 538 (587)
++++.-.+ ..|..++.. +...... ..+ .+.......-.++++|+|+.|+++.. |+
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 87777667 788888876 3322222 111 22233455778999999996665532 22
Q ss_pred --------cEEEEeCCC-CeeEE----EEec-----CCCCEEEEEEcCCCCCEEE
Q 007855 539 --------KCWFWDWKS-CKVFR----TLKC-----HEGVCIGCEWHPLEQSKVA 575 (587)
Q Consensus 539 --------~I~vwd~~t-~~~~~----~l~~-----h~~~V~~v~~sp~~~~~l~ 575 (587)
+|..||..+ +.... .+.. ....|..+.+.+ ++.+|+
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~-d~~lLv 230 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALP-DGRLLV 230 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEEC-CCcEEE
Confidence 234455544 32222 2221 345688888888 555544
No 449
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=90.07 E-value=25 Score=36.18 Aligned_cols=236 Identities=14% Similarity=0.172 Sum_probs=114.4
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE---EEEee-----cCCcceEEEEccCCCCCcEEEEEeCC--------
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQV---IRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSD-------- 405 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~---i~~~~-----~~~~~~~~~~~~~~~~~~~l~sg~~d-------- 405 (587)
.-+.|+|.|+|++|++ ...|.|++++ ..+.. +..+. ......-++++|.-.....|++....
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~ 80 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN 80 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence 3578999999877665 5599999999 44443 22221 11223467777753333344444331
Q ss_pred -CcEEEEeCCCC-------c-EEEEEcc---CCCCeeEEEEecCCCEEEEEECCCC-------------EEEEECCCCe-
Q 007855 406 -KKIVQWDMNTK-------E-ITQEYDQ---HLGAVNTITFVDNNRRFVTSSDDKS-------------LRVWEFGIPV- 459 (587)
Q Consensus 406 -g~I~iwD~~t~-------~-~~~~~~~---h~~~I~~i~~sp~~~~l~s~s~Dg~-------------I~iwd~~~~~- 459 (587)
..|.-|.+..+ + ++..+.. .......|.|.|++.++++.+..+. |.-.+.....
T Consensus 81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG~~p 160 (331)
T PF07995_consen 81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDGSIP 160 (331)
T ss_dssp EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTSSB-
T ss_pred ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccCcCC
Confidence 23444444332 1 1122222 2234566999999987777765443 2222221100
Q ss_pred -----------EEEEeecCCCcceeEEEEeCC-CCEEEEE-ECCCeEEEEEcCCceee----------------------
Q 007855 460 -----------VIKYISEPHMHSMPSISLHPN-TNWLAAQ-SLDNQILIYSTRERFQL---------------------- 504 (587)
Q Consensus 460 -----------~~~~~~~~~~~~i~~i~~sp~-g~~l~~~-s~dg~I~iwd~~~~~~~---------------------- 504 (587)
....+...+ .....++|+|. |.++++= +.++.=.|.-+..+...
T Consensus 161 ~dnP~~~~~~~~~~i~A~Gl-RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~~ 239 (331)
T PF07995_consen 161 ADNPFVGDDGADSEIYAYGL-RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPSC 239 (331)
T ss_dssp TTSTTTTSTTSTTTEEEE---SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS-
T ss_pred CCCccccCCCceEEEEEeCC-CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccCC
Confidence 000011111 22457899998 5544432 22222222222211100
Q ss_pred ----cccceecccccccceEEEEEcC-------CCCEEEEEcCCCcEEEEeCCCCeeEEE----EecCCCCEEEEEEcCC
Q 007855 505 ----NKKKRFAGHIVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRT----LKCHEGVCIGCEWHPL 569 (587)
Q Consensus 505 ----~~~~~~~~~~~~~~i~~l~~sp-------dg~~L~sgs~dG~I~vwd~~t~~~~~~----l~~h~~~V~~v~~sp~ 569 (587)
.....+..| ..+..+.|-. .|.++++.-..+.|....+.....+.. +......+..+++.|
T Consensus 240 ~~~~~P~~~~~~~---~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~p- 315 (331)
T PF07995_consen 240 PGFVPPVFAYPPH---SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGP- 315 (331)
T ss_dssp TTS---SEEETTT-----EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEET-
T ss_pred CCcCccceeecCc---cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcC-
Confidence 000011111 2344455543 455777777777888888875533222 123444799999999
Q ss_pred CCCEEEEEECCCcEE
Q 007855 570 EQSKVATCGWDGLIK 584 (587)
Q Consensus 570 ~~~~l~s~g~DG~I~ 584 (587)
++.++++-+.+|.|.
T Consensus 316 DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 316 DGALYVSDDSDGKIY 330 (331)
T ss_dssp TSEEEEEE-TTTTEE
T ss_pred CCeEEEEECCCCeEe
Confidence 777888877888874
No 450
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=90.06 E-value=7 Score=38.19 Aligned_cols=147 Identities=18% Similarity=0.196 Sum_probs=81.6
Q ss_pred EEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC---CCEEEEECCC---CeEEEEee--cCCCcceeEEEEeC
Q 007855 408 IVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD---KSLRVWEFGI---PVVIKYIS--EPHMHSMPSISLHP 479 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D---g~I~iwd~~~---~~~~~~~~--~~~~~~i~~i~~sp 479 (587)
-.+||+.+++....-......+.+-.+.++|++|++|+.- ..+++++... ........ ......-.+...-|
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 4578988876543322333444555677899999988752 3578887543 11111110 11233345566678
Q ss_pred CCCEEEEEECCCe-EEEEEcCCc----eeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 480 NTNWLAAQSLDNQ-ILIYSTRER----FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 480 ~g~~l~~~s~dg~-I~iwd~~~~----~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
+|+.|+.|+.... ..+|..... ..+..............--.+-..|+|++++.+..++ .|||..+.+.+..+
T Consensus 128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l 205 (243)
T PF07250_consen 128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL 205 (243)
T ss_pred CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence 9999999887743 344433211 0110011110011111222367789999998888654 56788888777766
Q ss_pred ec
Q 007855 555 KC 556 (587)
Q Consensus 555 ~~ 556 (587)
..
T Consensus 206 P~ 207 (243)
T PF07250_consen 206 PD 207 (243)
T ss_pred CC
Confidence 53
No 451
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.76 E-value=19 Score=34.29 Aligned_cols=129 Identities=10% Similarity=0.129 Sum_probs=69.5
Q ss_pred cEEEEEeCCCeEEEEecC-CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---C---eEEEE-ECCCCcEEEEeecC
Q 007855 310 HLILSAGMDTKVKIWDVF-NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---K---NIKYW-DTETGQVIRTFSTG 381 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g---~I~vW-d~~t~~~i~~~~~~ 381 (587)
+.|+.+...+.|.+|++. .....+.+|..- +.|..+.++..|++|++--.+ . .+|+| +++.. ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~------~~~ 101 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ------KEE 101 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh------ccc
Confidence 445444566889999995 234555566544 789999999999999986432 2 55554 33221 011
Q ss_pred CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC
Q 007855 382 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP 458 (587)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~ 458 (587)
..+..+.+.-. -+.++..... ...-.+-++. -..++.+|+..|-...|++|+. +.+.+|.+...
T Consensus 102 ~~~v~vRiaG~------~v~~~~~~~~-----~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~-~~l~lf~l~~~ 165 (215)
T PF14761_consen 102 NSPVRVRIAGH------RVTPSFNESS-----KDQLEIIELP-LSEPPLCIACCPVTGNLLVGCG-NKLVLFTLKYQ 165 (215)
T ss_pred CCcEEEEEccc------ccccCCCCcc-----ccceEEEEec-CCCCCCEEEecCCCCCEEEEcC-CEEEEEEEEEE
Confidence 11111111110 0111111110 0001122232 2567888888886666777765 57889987543
No 452
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.71 E-value=9.2 Score=40.14 Aligned_cols=142 Identities=13% Similarity=0.051 Sum_probs=83.6
Q ss_pred eeEEEEecCCCEEEEEECCCCEEEEECCCCe--EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc
Q 007855 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 506 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~ 506 (587)
-+.+-|...++.|+ +...|.+.-|-...+. ....+.....++|.++.|++|.+.||+.-.++.|.+++........
T Consensus 25 sngvFfDDaNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l- 102 (657)
T KOG2377|consen 25 SNGVFFDDANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL- 102 (657)
T ss_pred ccceeeccCcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-
Confidence 34455554444444 3444556666654321 1222223456699999999999999999999999999874322111
Q ss_pred cceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEcCCCCCEEE
Q 007855 507 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVA 575 (587)
Q Consensus 507 ~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~ 575 (587)
............|...+|+.. .-+|..+..| +-+|-+... +.++..+.|.-.|.-..|.+ +...++
T Consensus 103 ~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~-et~v~L 169 (657)
T KOG2377|consen 103 EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCP-ETAVIL 169 (657)
T ss_pred HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEcc-ccceEe
Confidence 111111112334667888766 4455555444 566655433 33455566777888888888 555433
No 453
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.59 E-value=36 Score=37.29 Aligned_cols=248 Identities=12% Similarity=0.089 Sum_probs=116.2
Q ss_pred CCcEEEEEeCCCeEEEEecCCCCe-eeEEEccc-CCceeeEEEecCC-CeEEEEeC--CCeEEEEECCCCcEEEEeecCC
Q 007855 308 YGHLILSAGMDTKVKIWDVFNSGK-CMRTYMGH-SKAVRDISFCNDG-TKFLTASY--DKNIKYWDTETGQVIRTFSTGK 382 (587)
Q Consensus 308 ~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~~h-~~~V~~l~fs~dg-~~l~s~s~--Dg~I~vWd~~t~~~i~~~~~~~ 382 (587)
.+..++.+..+|.+....+...+. ......+. .....++++..+| .+|+.||. |+.+.-|....-+.+..+..-.
T Consensus 221 ~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N~~ 300 (504)
T PF10433_consen 221 DGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPNWG 300 (504)
T ss_dssp TSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE----
T ss_pred CCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccCcC
Confidence 377888899999999988844342 22333333 5566788877665 36666665 5556666655556777777666
Q ss_pred cceEEEEccCC-CCCc------EEEEEe---CCCcEEEEeCCCCcEEE----EEccCCCCeeEEEEecC----CCEEEEE
Q 007855 383 IPYVVKLNPDD-DKQN------ILLAGM---SDKKIVQWDMNTKEITQ----EYDQHLGAVNTITFVDN----NRRFVTS 444 (587)
Q Consensus 383 ~~~~~~~~~~~-~~~~------~l~sg~---~dg~I~iwD~~t~~~~~----~~~~h~~~I~~i~~sp~----~~~l~s~ 444 (587)
+..-+++.... .... .+++++ .+|.|+++. .|-... ....-.+ ++.+-..+. ..+|+.+
T Consensus 301 Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr--~Gi~~~~~~~~~~~l~~-v~~iW~l~~~~~~~~~lv~S 377 (504)
T PF10433_consen 301 PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILR--NGIGIEGLELASSELPG-VTGIWTLKLSSSDHSYLVLS 377 (504)
T ss_dssp SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEE--ESBEEE--EEEEEEEST-EEEEEEE-SSSSSBSEEEEE
T ss_pred CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEe--ccCCceeeeeeccCCCC-ceEEEEeeecCCCceEEEEE
Confidence 66666654331 1111 344444 457787763 332222 1111222 443333322 4566666
Q ss_pred ECCCCEEEEECC---CCeEEEEeec-CC---CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc
Q 007855 445 SDDKSLRVWEFG---IPVVIKYISE-PH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 445 s~Dg~I~iwd~~---~~~~~~~~~~-~~---~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
..+. -+++.+. ....+..+.. .. ...+.+-.+. +..++=.+ ...|++.+............ . ...
T Consensus 378 ~~~~-T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt-~~~i~l~~~~~~~~~~~w~~---~-~~~ 449 (504)
T PF10433_consen 378 FPNE-TRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVT-PKGIRLIDLEDGKLTQEWKP---P-AGS 449 (504)
T ss_dssp ESSE-EEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEE-SSEEEEEESSSTSEEEEEE----T-TS-
T ss_pred cCCc-eEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEe-cCeEEEEECCCCeEEEEEeC---C-CCC
Confidence 6544 4455553 2233222211 11 1112221221 33333333 34477777654433321111 1 123
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe-c----CCCCEEEEEEcC
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK-C----HEGVCIGCEWHP 568 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~-~----h~~~V~~v~~sp 568 (587)
.|.+.+. .+.+++.+..++.+..+.+.......... . ....|.|+...|
T Consensus 450 ~I~~a~~--~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 450 IIVAASI--NDPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP 503 (504)
T ss_dssp --SEEEE--SSSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred eEEEEEE--CCCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence 3443444 34677777778889999888776643332 1 456788887766
No 454
>PLN02153 epithiospecifier protein
Probab=89.47 E-value=28 Score=35.87 Aligned_cols=147 Identities=9% Similarity=0.042 Sum_probs=69.7
Q ss_pred CCCeEEEEeCC-----CeEEEEECCCCcEEEEeec-----CCcceEEEEccCCCCCcEEEEEeCC-----------CcEE
Q 007855 351 DGTKFLTASYD-----KNIKYWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLAGMSD-----------KKIV 409 (587)
Q Consensus 351 dg~~l~s~s~D-----g~I~vWd~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~sg~~d-----------g~I~ 409 (587)
++..++.|+.+ ..+.+||+.+.+-...-.. ............ +..+++.|+.+ ..|.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 55666777653 3577889887654322111 111111111111 22566776643 2477
Q ss_pred EEeCCCCcEEEEEcc----CCCCeeEEEEecCCCEEEEEECC-------------CCEEEEECCCCeEEEEeec---CCC
Q 007855 410 QWDMNTKEITQEYDQ----HLGAVNTITFVDNNRRFVTSSDD-------------KSLRVWEFGIPVVIKYISE---PHM 469 (587)
Q Consensus 410 iwD~~t~~~~~~~~~----h~~~I~~i~~sp~~~~l~s~s~D-------------g~I~iwd~~~~~~~~~~~~---~~~ 469 (587)
+||+.+.+-...-.. ....-.+++. -++++++.++.+ ..|.+||+.+..-...-.. +..
T Consensus 163 ~yd~~~~~W~~l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~ 241 (341)
T PLN02153 163 AYNIADGKWVQLPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSA 241 (341)
T ss_pred EEECCCCeEeeCCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCC
Confidence 889887654321110 0011112222 256666665432 3588888877654332111 111
Q ss_pred cceeEEEEeCCCCEEEEEECC--------------CeEEEEEcCCc
Q 007855 470 HSMPSISLHPNTNWLAAQSLD--------------NQILIYSTRER 501 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~d--------------g~I~iwd~~~~ 501 (587)
....+++ ..++.+++.|+.. +.|..||+.+.
T Consensus 242 r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~ 286 (341)
T PLN02153 242 RSVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETL 286 (341)
T ss_pred cceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCcc
Confidence 1122222 2246667776641 25778887543
No 455
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=89.45 E-value=39 Score=40.32 Aligned_cols=82 Identities=17% Similarity=0.130 Sum_probs=41.3
Q ss_pred EcCCCCCeEEEEEccC--CCcE----EEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEe---cCC-CeEEEEeCC
Q 007855 292 WSGHTKGVSAIRFFPK--YGHL----ILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFC---NDG-TKFLTASYD 361 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~--~g~~----L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs---~dg-~~l~s~s~D 361 (587)
..||...|.|..+.-. +..+ .+..+-||.+.|=|. ..++.+.......+-+... +.. -+++..--|
T Consensus 343 gdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDf----NyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvd 418 (1899)
T KOG4659|consen 343 GDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDF----NYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVD 418 (1899)
T ss_pred cCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccc----hheeeecCCCceEEEEEecCCCccceeEEEecCcC
Confidence 3467777777665421 1122 234567888887654 2333332222212222222 112 245555567
Q ss_pred CeEEEEECCCCcEEEE
Q 007855 362 KNIKYWDTETGQVIRT 377 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~ 377 (587)
|++.|-|..+.+..+.
T Consensus 419 gtlyvSdp~s~qv~rv 434 (1899)
T KOG4659|consen 419 GTLYVSDPLSKQVWRV 434 (1899)
T ss_pred ceEEecCCCcceEEEe
Confidence 8888877776665443
No 456
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=89.20 E-value=29 Score=35.74 Aligned_cols=51 Identities=8% Similarity=0.074 Sum_probs=25.9
Q ss_pred cEEEEEeCC-----------CcEEEEeCCCCcEEEEEccCCCCeeE--EEEecCCCEEEEEECC
Q 007855 397 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAVNT--ITFVDNNRRFVTSSDD 447 (587)
Q Consensus 397 ~~l~sg~~d-----------g~I~iwD~~t~~~~~~~~~h~~~I~~--i~~sp~~~~l~s~s~D 447 (587)
.+.+.|+.+ ..+..||+.+..-...-........+ .+..-+++.++.|+.+
T Consensus 65 ~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 65 KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 567777653 24777888776543321111111111 1212467777887754
No 457
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=88.73 E-value=0.077 Score=55.37 Aligned_cols=148 Identities=9% Similarity=0.126 Sum_probs=100.5
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEE-EEEECCCeEEEEEcCCcee
Q 007855 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~~s~dg~I~iwd~~~~~~ 503 (587)
+........|.+.+..++.++.+..|..||-....... + ........++|..++..+ +.+-..+.+.+|++.+...
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq~~le-~--n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt 109 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQVILE-L--NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT 109 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcceecc-c--CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH
Confidence 33444456677777778889888889999854433222 2 234455667888777654 4455678999999976432
Q ss_pred ecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 504 LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
... .+.+..... -+.|++.+..++.|...|.+.|++..+.+.+...--|...+++++|.+ ++ +++.++.|..
T Consensus 110 qqL--E~gg~~s~s---ll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l-Ed-~vil~dcd~~ 181 (615)
T KOG2247|consen 110 QQL--ESGGTSSKS---LLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL-ED-YVILCDCDNT 181 (615)
T ss_pred HHH--hccCcchHH---HHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecc-cc-eeeecCcHHH
Confidence 211 111111111 178999999999999999999999888776666655888999999998 44 5666666644
No 458
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.41 E-value=17 Score=39.07 Aligned_cols=116 Identities=15% Similarity=0.189 Sum_probs=64.0
Q ss_pred EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE--EEEee----cCCCcceeEEEEeCCC------CEEEEEE-
Q 007855 422 YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV--IKYIS----EPHMHSMPSISLHPNT------NWLAAQS- 488 (587)
Q Consensus 422 ~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~----~~~~~~i~~i~~sp~g------~~l~~~s- 488 (587)
+.........|+|.|++++|++--..|.|++++...... +..+. .........|+++|+- .+|.+..
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt 104 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYT 104 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEe
Confidence 334556788999999998777665579999998654422 21111 1135668899999874 3444442
Q ss_pred ---------CCCeEEEEEcCCc-eee-cccceecccc--cccceEEEEEcCCCCEEEEEcCC
Q 007855 489 ---------LDNQILIYSTRER-FQL-NKKKRFAGHI--VAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 489 ---------~dg~I~iwd~~~~-~~~-~~~~~~~~~~--~~~~i~~l~~spdg~~L~sgs~d 537 (587)
....|.-|.+... ..+ .....+.+.. ....-..|.|.|||.+.++.+..
T Consensus 105 ~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 105 YKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred ccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 1234555554321 111 1111111110 01224468899999876654443
No 459
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=87.92 E-value=2 Score=29.44 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=25.8
Q ss_pred CceeeEEEecCC---CeEEEEeCCCeEEEEECCC
Q 007855 341 KAVRDISFCNDG---TKFLTASYDKNIKYWDTET 371 (587)
Q Consensus 341 ~~V~~l~fs~dg---~~l~s~s~Dg~I~vWd~~t 371 (587)
++|+++.|+|.. .+|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999843 4788887889999999985
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=87.70 E-value=39 Score=35.34 Aligned_cols=196 Identities=13% Similarity=0.192 Sum_probs=106.6
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec----CCCE--EEEEE-CC---CCEEEEEC
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD----NNRR--FVTSS-DD---KSLRVWEF 455 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp----~~~~--l~s~s-~D---g~I~iwd~ 455 (587)
.+-.+|......+++....++-+.+||+... .++.+. .+.++.+..-. .++. |++++ .+ .+|++|.+
T Consensus 58 AIWvnp~dp~kSlIigTdK~~GL~VYdL~Gk-~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~i 134 (381)
T PF02333_consen 58 AIWVNPADPAKSLIIGTDKKGGLYVYDLDGK-ELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRI 134 (381)
T ss_dssp EEE--SS-GGG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEE
T ss_pred cEecCCCCcccceEEEEeCCCCEEEEcCCCc-EEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEe
Confidence 4555666666678888889999999999654 455553 34556555432 3333 34443 32 46999977
Q ss_pred CC-CeEEEEeecC------CCcceeEEEEe--C-CCC-EEEEEECCCeEEEEEcCC---ce-eecccceecccccccceE
Q 007855 456 GI-PVVIKYISEP------HMHSMPSISLH--P-NTN-WLAAQSLDNQILIYSTRE---RF-QLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 456 ~~-~~~~~~~~~~------~~~~i~~i~~s--p-~g~-~l~~~s~dg~I~iwd~~~---~~-~~~~~~~~~~~~~~~~i~ 520 (587)
.. ...+..+..+ ....+..+|+. + +|. ++++...+|.+..|.+.. +. .....+.|.. .+.+-
T Consensus 135 d~~~g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~---~sQ~E 211 (381)
T PF02333_consen 135 DPDTGELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV---GSQPE 211 (381)
T ss_dssp ETTTTEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE----SS-EE
T ss_pred cCCCCcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC---CCcce
Confidence 53 1233333211 12235667764 3 344 667778889988887742 11 1112223322 34566
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCC-----CeeEEEEec--CCCCEEEEEEcC--CCCCEE-EEEECCCcEEEcC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKS-----CKVFRTLKC--HEGVCIGCEWHP--LEQSKV-ATCGWDGLIKYWD 587 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t-----~~~~~~l~~--h~~~V~~v~~sp--~~~~~l-~s~g~DG~I~iWD 587 (587)
.|.......+|+.|-.+--|+-|+... ++++....+ ....|-.++... .+..+| +|.-.+++..|||
T Consensus 212 GCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~ 288 (381)
T PF02333_consen 212 GCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD 288 (381)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred EEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence 678888888999999998888888752 233333332 334677777653 223344 4444566777774
No 461
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.69 E-value=41 Score=35.60 Aligned_cols=151 Identities=12% Similarity=0.092 Sum_probs=82.3
Q ss_pred eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec--c
Q 007855 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--K 506 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~--~ 506 (587)
...+..++++.+++.+..-..++-||-.... -..+..+....+..+.+.+++.+++++ ..|.+.. ....+.... .
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~-W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~ 317 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY-WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFD 317 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc-eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccc
Confidence 3445566777666655543333334432211 122333456678999999998877766 4565443 332222110 1
Q ss_pred cceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe---cCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 507 KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 507 ~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
.....-......+..+.|.+++..+++| ..|.+... ...|+.....+ .-......+.|.+ + ...+..|.+|.|
T Consensus 318 f~~~~~~~~~~~l~~v~~~~d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~~~~~~ly~v~f~~-~-~~g~~~G~~G~i 393 (398)
T PLN00033 318 FEEADIKSRGFGILDVGYRSKKEAWAAG-GSGILLRS-TDGGKSWKRDKGADNIAANLYSVKFFD-D-KKGFVLGNDGVL 393 (398)
T ss_pred eeecccCCCCcceEEEEEcCCCcEEEEE-CCCcEEEe-CCCCcceeEccccCCCCcceeEEEEcC-C-CceEEEeCCcEE
Confidence 1111111112346778899888776666 56666555 35555544443 2234678899876 3 356667778988
Q ss_pred EEc
Q 007855 584 KYW 586 (587)
Q Consensus 584 ~iW 586 (587)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 765
No 462
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=87.58 E-value=3.1 Score=40.05 Aligned_cols=72 Identities=8% Similarity=0.119 Sum_probs=50.2
Q ss_pred EEeCCCCEEEEEECCCeEEEEEcCCceeecccce----ecc-----cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 476 SLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR----FAG-----HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 476 ~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~----~~~-----~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
.+..++.+|++.+.+|.+++||+.+...+..... +.. ......|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3556788999999999999999988765433211 110 02345678888998888776654 6888999865
Q ss_pred CC
Q 007855 547 SC 548 (587)
Q Consensus 547 t~ 548 (587)
-+
T Consensus 96 L~ 97 (219)
T PF07569_consen 96 LG 97 (219)
T ss_pred cc
Confidence 43
No 463
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=87.51 E-value=34 Score=34.45 Aligned_cols=161 Identities=16% Similarity=0.237 Sum_probs=88.2
Q ss_pred CcEEEEeCCCCcEEEEEcc------CCCCeeEEEEecCC-----CEEEEE-ECCCCEEEEECCCCeEEEEeecC------
Q 007855 406 KKIVQWDMNTKEITQEYDQ------HLGAVNTITFVDNN-----RRFVTS-SDDKSLRVWEFGIPVVIKYISEP------ 467 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~------h~~~I~~i~~sp~~-----~~l~s~-s~Dg~I~iwd~~~~~~~~~~~~~------ 467 (587)
-+|.+||+.++++++.+.- ..+.++.+.+.... .++..+ +..+.|.|+|+.+++..+.....
T Consensus 34 pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~ 113 (287)
T PF03022_consen 34 PKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPD 113 (287)
T ss_dssp -EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-S
T ss_pred cEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceecc
Confidence 3788899999998887643 24567888887532 233333 33457999999988776555321
Q ss_pred ------------CCcceeEEEEeC---CCCEEEEEECCCeEEEEEcCCc-----eeeccc-----ceecccccccceEEE
Q 007855 468 ------------HMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRER-----FQLNKK-----KRFAGHIVAGYACQV 522 (587)
Q Consensus 468 ------------~~~~i~~i~~sp---~g~~l~~~s~dg~I~iwd~~~~-----~~~~~~-----~~~~~~~~~~~i~~l 522 (587)
....+..++.+| ++++|.-+...+. .+|.+.+. ...... ...-+.. .+....+
T Consensus 114 ~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~-~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k-~~~s~g~ 191 (287)
T PF03022_consen 114 AGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSR-KLYRVPTSVLRDPSLSDAQALASQVQDLGDK-GSQSDGM 191 (287)
T ss_dssp SEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-S-EEEEEEHHHHCSTT--HHH-HHHT-EEEEE----SECEE
T ss_pred ccceeccCceEecCCCccccccCCCCCCccEEEEEeCCCC-cEEEEEHHHhhCccccccccccccceecccc-CCCCceE
Confidence 112255566655 5566666654442 23332221 100000 0111111 1234458
Q ss_pred EEcCCCCEEEEEcCCCcEEEEeCCCC---eeEEEE-ecCC--CCEEEEEEcC
Q 007855 523 NFSPDGRFVMSGDGEGKCWFWDWKSC---KVFRTL-KCHE--GVCIGCEWHP 568 (587)
Q Consensus 523 ~~spdg~~L~sgs~dG~I~vwd~~t~---~~~~~l-~~h~--~~V~~v~~sp 568 (587)
+++++|.+.++--..+.|..|+..+. +.+..+ +... ..+.++.+.+
T Consensus 192 ~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~ 243 (287)
T PF03022_consen 192 AIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDP 243 (287)
T ss_dssp EEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T
T ss_pred EECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeecc
Confidence 88999999999899999999998761 112222 2222 3567788876
No 464
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.44 E-value=15 Score=43.68 Aligned_cols=170 Identities=16% Similarity=0.303 Sum_probs=98.5
Q ss_pred ccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEE--------ecCCC
Q 007855 282 CYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF--------CNDGT 353 (587)
Q Consensus 282 ~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~f--------s~dg~ 353 (587)
.-+|..++..+. |...-+.+-++|.=+..-+| .|+.+.+|+. +++.....+.+-...|..|.. -|.=+
T Consensus 65 ~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--iDn~L~lWny-~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~Iq 140 (1311)
T KOG1900|consen 65 VNIPDELLEQFS-NIECKTDMGIFPEIGRAWIT--IDNNLFLWNY-ESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQ 140 (1311)
T ss_pred ccCCHHHHHHhc-CcceeeeeccchhhcceEEE--eCCeEEEEEc-CCCCccccccchhhhheeeeeecCCCCcchhhhh
Confidence 346777777766 66666777777764554444 4789999999 566666677777777776654 23333
Q ss_pred eEEEEeCCCeEEEEECC----CCc---EEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEE--eCCCC---c---
Q 007855 354 KFLTASYDKNIKYWDTE----TGQ---VIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQW--DMNTK---E--- 417 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~----t~~---~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iw--D~~t~---~--- 417 (587)
+++..+.--.|.|+-+. ++. ....+.... ...+.++. ...++++|++| .||.|+-+ ....+ +
T Consensus 141 hlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~-~t~nGRIF~~G-~dg~lyEl~Yq~~~gWf~~rc~ 218 (1311)
T KOG1900|consen 141 HLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCIT-YTENGRIFFAG-RDGNLYELVYQAEDGWFGSRCR 218 (1311)
T ss_pred eeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEE-eccCCcEEEee-cCCCEEEEEEeccCchhhcccc
Confidence 44444444556665332 111 111122222 22222222 22344555554 55544422 22211 1
Q ss_pred -----------E---EEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC
Q 007855 418 -----------I---TQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 418 -----------~---~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
+ +..+. .+..+|..|++......+.+-+..|+|.+|++..
T Consensus 219 Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 219 KICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 0 11122 4577999999998888899999999999999975
No 465
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=87.38 E-value=29 Score=33.48 Aligned_cols=136 Identities=12% Similarity=0.123 Sum_probs=82.5
Q ss_pred CCceeeEEEecCCCeEEEEeCC---------CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 340 SKAVRDISFCNDGTKFLTASYD---------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~D---------g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
....++-..+|+|++++-.-.| |.++.|-.. ++....+..-.....+.|. .+...+.++-+.+-.|.-
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd--~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG-HQVELIWNCVGISNGLAWD--SDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC-CCceeeehhccCCcccccc--ccCcEEEEEccCceEEee
Confidence 3456667788999985533322 344444332 2222222222233334444 344456666777778877
Q ss_pred Ee--CCCCcE-----EEEEcc----CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC
Q 007855 411 WD--MNTKEI-----TQEYDQ----HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP 479 (587)
Q Consensus 411 wD--~~t~~~-----~~~~~~----h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp 479 (587)
|| ..+|.+ +..++. ..-..-.+++.-+|++++++-..++|...|..+++.+..+..+ ...++++||--
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklP-t~qitsccFgG 263 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLP-TPQITSCCFGG 263 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcC-CCceEEEEecC
Confidence 77 555532 222221 1111234455668899999999999999999999999998875 66889998864
No 466
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.33 E-value=33 Score=39.93 Aligned_cols=108 Identities=17% Similarity=0.178 Sum_probs=65.1
Q ss_pred EEEEEeCCCeEEEEecCCCCeeeEEE--cccCCceeeEEEecCC------CeEEEEeCCCeEEEEECCCCcEEEEeecC-
Q 007855 311 LILSAGMDTKVKIWDVFNSGKCMRTY--MGHSKAVRDISFCNDG------TKFLTASYDKNIKYWDTETGQVIRTFSTG- 381 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fs~dg------~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~- 381 (587)
.++.+-..|.+.-+....++++.... ..-...|.|+++.+++ ++++.++.|+++++..+.-..++..+...
T Consensus 551 qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~ 630 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQG 630 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccc
Confidence 44444455665555554444444333 2335678899998754 57999999999999999877777776543
Q ss_pred --CcceEEEEccCCCC------CcEEEEEeCCCcEEEE--eCCCCcE
Q 007855 382 --KIPYVVKLNPDDDK------QNILLAGMSDKKIVQW--DMNTKEI 418 (587)
Q Consensus 382 --~~~~~~~~~~~~~~------~~~l~sg~~dg~I~iw--D~~t~~~ 418 (587)
..+..+.+...... +-+|.+|-.+|.+.-+ |.-+|.+
T Consensus 631 l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~l 677 (1205)
T KOG1898|consen 631 LSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQL 677 (1205)
T ss_pred cCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccce
Confidence 22333333222211 3467777777776544 4445543
No 467
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=87.25 E-value=37 Score=34.63 Aligned_cols=106 Identities=8% Similarity=-0.001 Sum_probs=53.6
Q ss_pred CCCeEEEEeCC-----CeEEEEECCCCcEE---EEee---cCCcceEEEEccCCCCCcEEEEEeC-----CCcEEEEeCC
Q 007855 351 DGTKFLTASYD-----KNIKYWDTETGQVI---RTFS---TGKIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMN 414 (587)
Q Consensus 351 dg~~l~s~s~D-----g~I~vWd~~t~~~i---~~~~---~~~~~~~~~~~~~~~~~~~l~sg~~-----dg~I~iwD~~ 414 (587)
++..++.|+.+ ..+..+|+.+.+.. ..+. ......+++.. ++.+++.|+. ...+..||+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~----~~~iYv~GG~~~~~~~~~v~~yd~~ 147 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK----DGTLYVGGGNRNGKPSNKSYLFNLE 147 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE----CCEEEEEeCcCCCccCceEEEEcCC
Confidence 55666677654 35666777766531 1111 11111122221 2256666664 2468889988
Q ss_pred CCcEEEEEccC-CCCeeEEEEecCCCEEEEEECCCC----EEEEECCCCeE
Q 007855 415 TKEITQEYDQH-LGAVNTITFVDNNRRFVTSSDDKS----LRVWEFGIPVV 460 (587)
Q Consensus 415 t~~~~~~~~~h-~~~I~~i~~sp~~~~l~s~s~Dg~----I~iwd~~~~~~ 460 (587)
+.+-...-.-. .......+..-++++++.|+.++. +.+||..+..-
T Consensus 148 ~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 148 TQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 76543321111 111222223346778888876643 56788876543
No 468
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=87.03 E-value=33 Score=33.79 Aligned_cols=150 Identities=11% Similarity=0.138 Sum_probs=82.9
Q ss_pred ceEEEEccCCCCCcEEEEEeCC--CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEE-CCCCeE
Q 007855 384 PYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE-FGIPVV 460 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~d--g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd-~~~~~~ 460 (587)
....++++++. .+.++...+ ..|+++.. +....... ....+..-.|.+++...+....+...+++. ...+..
T Consensus 26 ~~s~AvS~dg~--~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 26 VTSPAVSPDGS--RVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred ccceEECCCCC--eEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 44556666543 333333223 34444443 32222221 223788889999987777766666667774 222221
Q ss_pred -EEEeecCCCc-ceeEEEEeCCCCEEEEEE---CCCeEEEEEcCC---c--eeecccceecccccccceEEEEEcCCCCE
Q 007855 461 -IKYISEPHMH-SMPSISLHPNTNWLAAQS---LDNQILIYSTRE---R--FQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 461 -~~~~~~~~~~-~i~~i~~sp~g~~l~~~s---~dg~I~iwd~~~---~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
...+...... .|..+.++|+|..++... .++.|.+--+.. + ..+...... .......+..+.|.+++.+
T Consensus 101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~-~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRV-APPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEe-cccccCcceeeeecCCCEE
Confidence 1122222222 899999999999888776 347777765431 1 111111111 1111346778999999998
Q ss_pred EEEEcCCCc
Q 007855 531 VMSGDGEGK 539 (587)
Q Consensus 531 L~sgs~dG~ 539 (587)
++.+...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 887766544
No 469
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=86.94 E-value=3.8 Score=42.77 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=100.6
Q ss_pred CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE-eecCCcc---eEEE-EccCCCCCcEEEEEeC
Q 007855 330 GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-FSTGKIP---YVVK-LNPDDDKQNILLAGMS 404 (587)
Q Consensus 330 ~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~-~~~~~~~---~~~~-~~~~~~~~~~l~sg~~ 404 (587)
++.++.+..-...|..+-..|||+.|..-+. ..+.|+++.+...... +-..... ..+. -..--..+.-++++..
T Consensus 210 ~e~i~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 210 QEIIRLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 3444455556677888999999998887665 6888888876543221 1111010 0000 0000012345888999
Q ss_pred CCcEEEE-eCCCC-c----EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEe
Q 007855 405 DKKIVQW-DMNTK-E----ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 478 (587)
Q Consensus 405 dg~I~iw-D~~t~-~----~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~s 478 (587)
||.|..| |.+.+ . .++.++-...++..+.-..+.+-|++-+..|++.++.....+.+..- ..-..+..++++
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~--~~~~~~~~~~~S 366 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFE--RAYQAPQLVAMS 366 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehh--hhhcCcceeeeC
Confidence 9999988 44432 1 22223222334444443344556888888999888875544433222 233366788999
Q ss_pred CCCCEEEEEECCCeEEEEEcCCce
Q 007855 479 PNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 479 p~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
|++.++++-. .|.|+++.+.+..
T Consensus 367 p~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 367 PNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred cccchheeec-CCceEEEEecCCC
Confidence 9999988754 5779999887653
No 470
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=86.76 E-value=21 Score=31.27 Aligned_cols=114 Identities=10% Similarity=0.075 Sum_probs=66.2
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCCC--------eEEEEeecCCCcceeEEEEeC-----CCCEEEEEECCCeEEEEEc
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGIP--------VVIKYISEPHMHSMPSISLHP-----NTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~~--------~~~~~~~~~~~~~i~~i~~sp-----~g~~l~~~s~dg~I~iwd~ 498 (587)
-.|......|++++.-|.|.|++.... ..+..+ .-...|++++-.+ ....|+.|+ ...|..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~L--Nin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFL--NINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEE--ECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 345555567888888888999886532 223333 2345677776544 235566665 566999999
Q ss_pred CCceeecccceecccccccceEEEEE---cCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 499 RERFQLNKKKRFAGHIVAGYACQVNF---SPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~i~~l~~---spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
.....+..+... ..+.++.+ .....-|+..+.+..|.-||....+.+.+.
T Consensus 81 ~~N~d~Fyke~~------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 81 ENNSDLFYKEVP------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred ccCchhhhhhCc------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 876554333222 22333333 332233444555678888887766666554
No 471
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=86.03 E-value=4.2 Score=27.17 Aligned_cols=40 Identities=33% Similarity=0.493 Sum_probs=30.5
Q ss_pred cCCCeEEEEe-CCCeEEEEECCCCcEEEEeecCCcceEEEE
Q 007855 350 NDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKL 389 (587)
Q Consensus 350 ~dg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~ 389 (587)
|++++|+++. .+++|.++|..+++.+..+..+..+..+.+
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 4667666654 578999999999999998888776665544
No 472
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=85.56 E-value=46 Score=34.11 Aligned_cols=161 Identities=14% Similarity=0.255 Sum_probs=81.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCe------EEEEecCCCC---eeeE-----EEcccCC--------ceeeEEEecCCC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTK------VKIWDVFNSG---KCMR-----TYMGHSK--------AVRDISFCNDGT 353 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~------I~iWd~~~~~---~~~~-----~~~~h~~--------~V~~l~fs~dg~ 353 (587)
-++++.|.+.+. +..+++.+.+|. +..+.+.... ..+. .+..-.+ -.-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~-~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPD-DGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCC-CCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 467899999976 445666666776 6555552211 1111 1111111 233667766777
Q ss_pred eEEEEeCC------CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC
Q 007855 354 KFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 427 (587)
Q Consensus 354 ~l~s~s~D------g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~ 427 (587)
++++.-.+ ..|..++.. |+.+..+..+.. +.+... +. .-.....
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~-----~~~~~~-----------~~-------------~~~~~N~ 147 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAA-----FLPDAN-----------GT-------------SGRRNNR 147 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccc-----cccccC-----------cc-------------ccccCCC
Confidence 66666555 556666654 554444422110 000000 00 1112456
Q ss_pred CeeEEEEecCCCEEEEEECC-----C---------CEEEEECC--C-CeEEE---EeecC-----CCcceeEEEEeCCCC
Q 007855 428 AVNTITFVDNNRRFVTSSDD-----K---------SLRVWEFG--I-PVVIK---YISEP-----HMHSMPSISLHPNTN 482 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~D-----g---------~I~iwd~~--~-~~~~~---~~~~~-----~~~~i~~i~~sp~g~ 482 (587)
..-+|+++|+|+.|+++... + .++|+.+. + +.... +...+ ....+..+.+.++++
T Consensus 148 G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~ 227 (326)
T PF13449_consen 148 GFEGLAVSPDGRTLFAAMESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR 227 (326)
T ss_pred CeEEEEECCCCCEEEEEECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc
Confidence 67788888888866665432 1 14555443 3 11111 11111 356788888888888
Q ss_pred EEEEE
Q 007855 483 WLAAQ 487 (587)
Q Consensus 483 ~l~~~ 487 (587)
+|+.=
T Consensus 228 lLvLE 232 (326)
T PF13449_consen 228 LLVLE 232 (326)
T ss_pred EEEEE
Confidence 76653
No 473
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=85.02 E-value=47 Score=33.69 Aligned_cols=234 Identities=10% Similarity=0.027 Sum_probs=112.4
Q ss_pred cEEEEEeCCCeEEEEecCCC-CeeeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEEECCCCcE-------------
Q 007855 310 HLILSAGMDTKVKIWDVFNS-GKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQV------------- 374 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~t~~~------------- 374 (587)
.+|+.|..+|...+. +... ....+.+ +...|+++...+.-+.|++-+ ....++++++..-..
T Consensus 14 ~~lL~GTe~Gly~~~-~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~ 90 (302)
T smart00036 14 KWLLVGTEEGLYVLN-ISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIR 90 (302)
T ss_pred cEEEEEeCCceEEEE-cccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccccc
Confidence 589999999965554 5222 3343333 567899999999777666654 334599999843221
Q ss_pred -EEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--c--EEEEE---c-cCCCCeeEEEEecC--CCEEEE
Q 007855 375 -IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--E--ITQEY---D-QHLGAVNTITFVDN--NRRFVT 443 (587)
Q Consensus 375 -i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~--~~~~~---~-~h~~~I~~i~~sp~--~~~l~s 443 (587)
.......+...|..+.........++++....+|.++..... + ....+ . ....++..+..+++ ...++.
T Consensus 91 ~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcv 170 (302)
T smart00036 91 KNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICI 170 (302)
T ss_pred ccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEE
Confidence 001122222223333322222244555566667777644322 1 11110 0 11123333333332 456777
Q ss_pred EECCCCEEEEECCCC--eE----EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC-ceeecccceecccccc
Q 007855 444 SSDDKSLRVWEFGIP--VV----IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVA 516 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~--~~----~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~ 516 (587)
|+..+...++++... .. .............++..-+++.+|++ - +....+.|... .........+ .
T Consensus 171 G~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc-~-~~~~v~Vn~~G~~~~r~~~l~w-----~ 243 (302)
T smart00036 171 GSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLC-Y-DEFGVFVNLYGKRRSRNPILHW-----E 243 (302)
T ss_pred EEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEE-E-CcEEEEEeCCCCccccceEEEc-----C
Confidence 776533444444321 00 00000001102223333334444443 3 33344445443 1111111112 2
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 556 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~ 556 (587)
....++++. ..||++-..+ .|.++++.++++++.+..
T Consensus 244 ~~p~~~~~~--~pyll~~~~~-~ievr~l~~~~l~q~i~~ 280 (302)
T smart00036 244 FMPESFAYH--SPYLLAFHDN-GIEIRSIKTGELLQELAD 280 (302)
T ss_pred CcccEEEEE--CCEEEEEcCC-cEEEEECCCCceEEEEec
Confidence 233446665 4677777655 599999999999888864
No 474
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.94 E-value=6.2 Score=46.60 Aligned_cols=137 Identities=12% Similarity=0.201 Sum_probs=80.3
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEe--------CCCCEEEEEECCCeEEEEEcCCceeecccceecc----c
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH--------PNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG----H 513 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~s--------p~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~----~ 513 (587)
-|+.+.+|++.+......+.. ..+.|..+.+- |.=+++++...--.|.++-+.-.........+.. .
T Consensus 97 iDn~L~lWny~~~~e~~~~d~-~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDG-LSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCccccccc-hhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 477899999998666555532 44445544432 2224455555555666665432211111111111 1
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCCcEEEEeC----CC------Cee--------------EEEEe-cCCCCEEEEEEcC
Q 007855 514 IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW----KS------CKV--------------FRTLK-CHEGVCIGCEWHP 568 (587)
Q Consensus 514 ~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~----~t------~~~--------------~~~l~-~h~~~V~~v~~sp 568 (587)
.....+.++....+|+.+++|-.+ .+|.+ .. ++. +..+. .+..+|..+....
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~ 252 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN 252 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence 234567888888888877776544 45543 11 000 11223 4567899999987
Q ss_pred CCCCEEEEEECCCcEEEcC
Q 007855 569 LEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 569 ~~~~~l~s~g~DG~I~iWD 587 (587)
....|.+-+..|+|.+||
T Consensus 253 -SR~IlY~lsek~~v~~Y~ 270 (1311)
T KOG1900|consen 253 -SRNILYVLSEKGTVSAYD 270 (1311)
T ss_pred -ccceeeeeccCceEEEEE
Confidence 667899999999999996
No 475
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.61 E-value=6.6 Score=37.81 Aligned_cols=65 Identities=17% Similarity=0.152 Sum_probs=47.5
Q ss_pred EecCCCEEEEEECCCCEEEEECCCCeEEEEe------ec-------CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI------SE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~------~~-------~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
+..++.++++.+.+|.+++||+.+.+.+..- .. .....|..+.++.+|.-|++-+ +|..+.|+..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3446889999999999999999887654322 11 2445678888888887776655 5778888764
No 476
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.52 E-value=87 Score=36.38 Aligned_cols=158 Identities=13% Similarity=0.188 Sum_probs=95.1
Q ss_pred ccCCceeeEEEe---c----CCCeEEEEeCCCeEEEEECCCC---------------cEEEEee----cCCcceEEEEcc
Q 007855 338 GHSKAVRDISFC---N----DGTKFLTASYDKNIKYWDTETG---------------QVIRTFS----TGKIPYVVKLNP 391 (587)
Q Consensus 338 ~h~~~V~~l~fs---~----dg~~l~s~s~Dg~I~vWd~~t~---------------~~i~~~~----~~~~~~~~~~~~ 391 (587)
.-..+|..|+|. . ..++|++ -....+.|+...-. .++..+. .+....-++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~V-rt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAV-RTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEE-EcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 456789999998 2 1234444 44456666662111 2333443 233445688888
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCC-----cEEEEEccCCC----------CeeEEEEecCCCEEEEEECCCCEEEEECC
Q 007855 392 DDDKQNILLAGMSDKKIVQWDMNTK-----EITQEYDQHLG----------AVNTITFVDNNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwD~~t~-----~~~~~~~~h~~----------~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~ 456 (587)
... ..|++....|...||++... ........+.+ ....|.|.++...|++++. ..+.++|+.
T Consensus 156 ~~~--~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r-~~l~~~d~~ 232 (765)
T PF10214_consen 156 WDQ--RQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR-SKLMLIDFE 232 (765)
T ss_pred Ccc--ceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC-CceEEEECC
Confidence 665 47999999999999999211 11111111222 2347889888888888776 568999998
Q ss_pred CCeEEE-EeecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCC
Q 007855 457 IPVVIK-YISEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 457 ~~~~~~-~~~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~ 500 (587)
...... .+.......|..+.-++.. .+++.-+ ...|..+++..
T Consensus 233 ~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 233 SNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CCCccchhccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 876644 3323345668888888762 2333322 35677777665
No 477
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.42 E-value=88 Score=36.35 Aligned_cols=117 Identities=15% Similarity=0.218 Sum_probs=69.8
Q ss_pred CCCeeEEEEec-CCCEEEEEECCCCEEEEECCC----Ce-EEEE-------e-ec-CCCcceeEEEEeCCCCEEEEEECC
Q 007855 426 LGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGI----PV-VIKY-------I-SE-PHMHSMPSISLHPNTNWLAAQSLD 490 (587)
Q Consensus 426 ~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~----~~-~~~~-------~-~~-~~~~~i~~i~~sp~g~~l~~~s~d 490 (587)
..+...++|+| +...|++....|...||++.. .. .+.. + .. ........+.|.++...|++++ .
T Consensus 145 g~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-r 223 (765)
T PF10214_consen 145 GFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-R 223 (765)
T ss_pred CCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-C
Confidence 34678899998 445899999999999999921 10 1111 1 00 1123344788988877787776 4
Q ss_pred CeEEEEEcCCceeecccceecccccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCC
Q 007855 491 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t 547 (587)
..+.++|+.+...... +........|.++.-+|.. .+++.-+ ...|...++..
T Consensus 224 ~~l~~~d~~~~~~~~~---l~~~~~~~~IlDv~~~~~~~~~~FiLT-s~eiiw~~~~~ 277 (765)
T PF10214_consen 224 SKLMLIDFESNWQTEY---LVTAKTWSWILDVKRSPDNPSHVFILT-SKEIIWLDVKS 277 (765)
T ss_pred CceEEEECCCCCccch---hccCCChhheeeEEecCCccceEEEEe-cCeEEEEEccC
Confidence 5588899887644322 1122234667778877762 2222222 23566666655
No 478
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=84.30 E-value=11 Score=42.20 Aligned_cols=92 Identities=11% Similarity=0.251 Sum_probs=48.0
Q ss_pred eeeEEEecCCCeEEEEeCCC-----eEEEEECC---CCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC
Q 007855 343 VRDISFCNDGTKFLTASYDK-----NIKYWDTE---TGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN 414 (587)
Q Consensus 343 V~~l~fs~dg~~l~s~s~Dg-----~I~vWd~~---t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~ 414 (587)
-..++|-|.|..+++-+.|| .|+++.-. .|+.-............+|..... +++......|.+|-..
T Consensus 249 e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s~----vlav~~~n~~~lwttk 324 (1243)
T COG5290 249 EHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLST----VLAVAEGNLLKLWTTK 324 (1243)
T ss_pred hhccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHHH----HHHHhhcceEEEEEcc
Confidence 34588999999999987654 34444321 222212222222223333433221 3344455788899776
Q ss_pred CCcEEEEEccCCCCeeEEEEecCC
Q 007855 415 TKEITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 415 t~~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
+-..-......-..+.-+.|+|..
T Consensus 325 NyhWYLK~e~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 325 NYHWYLKVERQIPGISYVKWHPEE 348 (1243)
T ss_pred ceEEEEEEeecCCCcceeeecccc
Confidence 654333333334455666777643
No 479
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.24 E-value=7.3 Score=41.57 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=48.6
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEe---------CCCCeeEEEEe-----------cCCCCEEEEEEcCCC--CCEE
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWD---------WKSCKVFRTLK-----------CHEGVCIGCEWHPLE--QSKV 574 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd---------~~t~~~~~~l~-----------~h~~~V~~v~~sp~~--~~~l 574 (587)
-.|..+..++.|..++-.+.+|.+.++= ++.|+.....+ ...-.+..++|||+. ...|
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL 183 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL 183 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence 3466788899999999999998765542 13343222111 112246778999975 5678
Q ss_pred EEEECCCcEEEcC
Q 007855 575 ATCGWDGLIKYWD 587 (587)
Q Consensus 575 ~s~g~DG~I~iWD 587 (587)
..-..|.+|||||
T Consensus 184 ~iL~sdnviRiy~ 196 (741)
T KOG4460|consen 184 VLLTSDNVIRIYS 196 (741)
T ss_pred EEEecCcEEEEEe
Confidence 8888899999996
No 480
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.75 E-value=79 Score=36.59 Aligned_cols=71 Identities=21% Similarity=0.104 Sum_probs=48.6
Q ss_pred cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc----ce-----------ecccccccceEEEEEcCCCCEEEEE
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK----KR-----------FAGHIVAGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~----~~-----------~~~~~~~~~i~~l~~spdg~~L~sg 534 (587)
..|.++....-+.+|+....||.|.++|..+...+... .. +.... ...+..++|||.+..++.-
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~-~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPC-IQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCcccccccccccccccc-CCCCceEEECcccceEEEE
Confidence 45667777777889999999999999997765443322 00 00000 1123348899999999999
Q ss_pred cCCCcEE
Q 007855 535 DGEGKCW 541 (587)
Q Consensus 535 s~dG~I~ 541 (587)
+.+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9998865
No 481
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.74 E-value=15 Score=39.10 Aligned_cols=31 Identities=13% Similarity=0.292 Sum_probs=25.2
Q ss_pred cceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
..|..+++.+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999889999999999999999964
No 482
>PLN02153 epithiospecifier protein
Probab=83.69 E-value=56 Score=33.58 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=33.9
Q ss_pred cEEEEEeCC-----CcEEEEeCCCCcEEEE--Ecc---CCCCeeEEEEecCCCEEEEEECC-----------CCEEEEEC
Q 007855 397 NILLAGMSD-----KKIVQWDMNTKEITQE--YDQ---HLGAVNTITFVDNNRRFVTSSDD-----------KSLRVWEF 455 (587)
Q Consensus 397 ~~l~sg~~d-----g~I~iwD~~t~~~~~~--~~~---h~~~I~~i~~sp~~~~l~s~s~D-----------g~I~iwd~ 455 (587)
.+++.|+.+ ..+.+||+.+.+-... +.. ........+..-++++++.|+.+ ..|.+||.
T Consensus 87 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~ 166 (341)
T PLN02153 87 KLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNI 166 (341)
T ss_pred EEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEEC
Confidence 567777643 3578899887654321 110 11111112223356677777754 24777888
Q ss_pred CCCeE
Q 007855 456 GIPVV 460 (587)
Q Consensus 456 ~~~~~ 460 (587)
.+..-
T Consensus 167 ~~~~W 171 (341)
T PLN02153 167 ADGKW 171 (341)
T ss_pred CCCeE
Confidence 76543
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=83.60 E-value=29 Score=37.05 Aligned_cols=31 Identities=23% Similarity=0.410 Sum_probs=24.9
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3388899988889999999999999999974
No 484
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=83.21 E-value=77 Score=37.10 Aligned_cols=174 Identities=15% Similarity=0.205 Sum_probs=93.6
Q ss_pred eEEEEECCCCcEEEEeecCCc--c---eEEEEccCCCCCcEEEEEe-----------CCCcEEEEeCC-CCcEEEEEc--
Q 007855 363 NIKYWDTETGQVIRTFSTGKI--P---YVVKLNPDDDKQNILLAGM-----------SDKKIVQWDMN-TKEITQEYD-- 423 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~--~---~~~~~~~~~~~~~~l~sg~-----------~dg~I~iwD~~-t~~~~~~~~-- 423 (587)
.|++.|..+++.+..+..+.. . ..+.|+... ...++++|. .+|.++.|++- .++.+.-+.
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~-~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSE-YQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCC-CceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeecc
Confidence 488888888887777665433 1 122233322 223444443 24456666653 333222221
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC-CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.-.+.|. ++.|-..++++| -...+++||+...++++...... ...|+.+.+ .+..+++|...-.|.++..+...
T Consensus 933 ~~~~~v~--Ai~~f~~~~Lag-vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~ 1007 (1205)
T KOG1898|consen 933 EIPGPVG--AICPFQGRVLAG-VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRED 1007 (1205)
T ss_pred CCCccce--EEeccCCEEEEe-cccEEEEeeCChHHHHhhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCC
Confidence 1223343 444545555444 45689999998877766554333 345566655 45677777666666555433211
Q ss_pred eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
+.+..+.......+++.+.+ -|-..++.++.-|.+++-.+
T Consensus 1008 --n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~ 1047 (1205)
T KOG1898|consen 1008 --NQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRI 1047 (1205)
T ss_pred --CeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEEC
Confidence 11233444444455554443 35557788888888887765
No 485
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=83.17 E-value=6.5 Score=43.59 Aligned_cols=72 Identities=19% Similarity=0.276 Sum_probs=44.9
Q ss_pred CcEEEEEeCCCeEEEEecCC---CCeeeEE-Ec-c--------------------cCCceeeEEEec----CCCeEEEEe
Q 007855 309 GHLILSAGMDTKVKIWDVFN---SGKCMRT-YM-G--------------------HSKAVRDISFCN----DGTKFLTAS 359 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~---~~~~~~~-~~-~--------------------h~~~V~~l~fs~----dg~~l~s~s 359 (587)
...|+.+..||.+....... .+..... .. . ....+..++++. +..+|++.+
T Consensus 158 ~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl~ 237 (547)
T PF11715_consen 158 EANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTLS 237 (547)
T ss_dssp SSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEEE
T ss_pred CCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEEe
Confidence 56777777888888877633 2221111 11 1 123455566665 678999999
Q ss_pred CCCeEEEEECCCCcEEEEeec
Q 007855 360 YDKNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~~~~ 380 (587)
.|++||+||+.+++++.....
T Consensus 238 ~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 238 RDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp TTSEEEEEETTTTCEEEEEET
T ss_pred CCCeEEEEECCCCeEEEEecc
Confidence 999999999999999777643
No 486
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=83.09 E-value=76 Score=34.64 Aligned_cols=197 Identities=14% Similarity=0.109 Sum_probs=98.6
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI 418 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~ 418 (587)
..|.++....+|. |.+++++|.+++-+.+ ......+... .....+...+.... ..+-...+-|.+.+-+-.++..
T Consensus 290 S~vnsL~~D~dGs-LWv~t~~giv~~~~a~-w~~ma~in~~dG~v~~~~~~a~~ll~-~~v~~~ns~g~L~van~stG~~ 366 (671)
T COG3292 290 STVNSLWLDTDGS-LWVGTYGGIVRYLTAD-WKRMAVINDSDGGVSQYEAVAPALLS-WGVRQLNSIGELMVANGSTGEL 366 (671)
T ss_pred ccccceeeccCCC-EeeeccCceEEEecch-hhheeeeecCCCchhhhhccCchhcc-cceeeccccceEEEecCCCCcE
Confidence 3456666666665 6666777766654432 1111111111 11111111111000 0122222233444445555655
Q ss_pred EEEEcc-CCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEE
Q 007855 419 TQEYDQ-HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 496 (587)
Q Consensus 419 ~~~~~~-h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iw 496 (587)
+..... ....|+.+++...+ .+..++...-+..|+..+ ............+.|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~g-~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~- 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSRG-RLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR- 443 (671)
T ss_pred EEEeeeccccccchhhhccCC-cEEEEecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec-
Confidence 544322 23456666776644 566666665567777766 4444444445566788888888888 888888886654
Q ss_pred EcCCceeecccceecccc-cccceEEEEEcCCCCE-EEEEcCCCcEEEEeCCC
Q 007855 497 STRERFQLNKKKRFAGHI-VAGYACQVNFSPDGRF-VMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 497 d~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdg~~-L~sgs~dG~I~vwd~~t 547 (587)
+.+..... ....+..+. ...++..+.+.|+|++ |++|+ .|..|+.+.
T Consensus 444 ~pe~~~v~-n~ln~~~~~l~~s~~~~lg~~~~g~Lw~a~g~---gva~~~sq~ 492 (671)
T COG3292 444 DPESGRVL-NLLNPGSHGLDGSRVEQLGLGPDGRLWLAAGS---GVAAWESQR 492 (671)
T ss_pred Cccccchh-cccccccCcCCcchhhhhccCCCCceEEEecc---eeeeecccc
Confidence 22221111 111111121 1344667888899875 33333 256666543
No 487
>PRK13684 Ycf48-like protein; Provisional
Probab=82.64 E-value=62 Score=33.31 Aligned_cols=140 Identities=9% Similarity=-0.045 Sum_probs=72.8
Q ss_pred EEEEeCCCcEEEEeCCCCc-EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC---CCcceeE
Q 007855 399 LLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP---HMHSMPS 474 (587)
Q Consensus 399 l~sg~~dg~I~iwD~~t~~-~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~---~~~~i~~ 474 (587)
+++.+..|.+..-.-..++ .......-...++++.+.++++.++++ ..|.+++=..+.+........+ ....+..
T Consensus 186 ~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~ 264 (334)
T PRK13684 186 YVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLD 264 (334)
T ss_pred EEEEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceee
Confidence 4555556655532111222 222222345678999999988876655 4576643233443333322222 2245778
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
+.+.+++..+++ +.+|.|. .....+..........+. ......+.|..+++.++ .+..|.|.-|+
T Consensus 265 v~~~~~~~~~~~-G~~G~v~-~S~d~G~tW~~~~~~~~~--~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 265 LAYRTPGEIWAG-GGNGTLL-VSKDGGKTWEKDPVGEEV--PSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred EEEcCCCCEEEE-cCCCeEE-EeCCCCCCCeECCcCCCC--CcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 889988775555 4566554 344444333222111111 22455577766666555 55677777665
No 488
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.31 E-value=72 Score=33.82 Aligned_cols=140 Identities=11% Similarity=0.047 Sum_probs=80.0
Q ss_pred eCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec--C-CcceEEEEc
Q 007855 316 GMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--G-KIPYVVKLN 390 (587)
Q Consensus 316 s~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~--~-~~~~~~~~~ 390 (587)
-..|.+.=|.+...+ -++..-....++|.+|.|++|.+.|++--.+.+|.+++....+....... . ....+..|.
T Consensus 40 vrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~ 119 (657)
T KOG2377|consen 40 VRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFC 119 (657)
T ss_pred EecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEE
Confidence 334556666653222 33333345667999999999999999999999999999854433322221 1 122244455
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEEccCCCCeeEEEEecCCCEEEEEE--CCCCEEEEECCCC
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDNNRRFVTSS--DDKSLRVWEFGIP 458 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s--~Dg~I~iwd~~~~ 458 (587)
+... .-++.-... .+-+|-... ...++..+.|.-.|+-..|.++.+.++.++ ..+++.=+-++++
T Consensus 120 W~~s--~e~A~i~~~-G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 120 WTSS--TEIAFITDQ-GIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EecC--eeEEEEecC-CeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 4433 223333333 344443322 233444556888899999998887654443 3344444444443
No 489
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=82.27 E-value=1e+02 Score=35.63 Aligned_cols=69 Identities=13% Similarity=0.046 Sum_probs=50.0
Q ss_pred CCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEe----e--------------cCCCcceeEEEEeCCCCEEEEE
Q 007855 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI----S--------------EPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~----~--------------~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
.+.|.+|+...-+..++.+..||+|.++|-.+.+.+... . .+....+..++|+|++..++.-
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356777887777889999999999999997765433222 1 0112234457899999999999
Q ss_pred ECCCeEE
Q 007855 488 SLDNQIL 494 (587)
Q Consensus 488 s~dg~I~ 494 (587)
..+|.+.
T Consensus 339 ~~~~~~~ 345 (753)
T PF11635_consen 339 DEDGKTK 345 (753)
T ss_pred ecCCCce
Confidence 9898866
No 490
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=82.16 E-value=81 Score=34.30 Aligned_cols=151 Identities=17% Similarity=0.101 Sum_probs=71.9
Q ss_pred CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCC--cceeEEEEeCCC
Q 007855 404 SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM--HSMPSISLHPNT 481 (587)
Q Consensus 404 ~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~--~~i~~i~~sp~g 481 (587)
..+.+.++|.. |.+...+.........+...++|.+++..+ ..++.+|+... .+.....+.. ..=..+...|+|
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~~~~~~HHD~~~l~nG 201 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPGGYYDFHHDIDELPNG 201 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TTS
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCCcccccccccEECCCC
Confidence 44556666653 444444433222222266778887776555 77888888644 3333332221 112456778899
Q ss_pred CEEEEEEC--------------CC---------eEEEEEcCCceeeccc-----------ceecccccccceEEEEEcC-
Q 007855 482 NWLAAQSL--------------DN---------QILIYSTRERFQLNKK-----------KRFAGHIVAGYACQVNFSP- 526 (587)
Q Consensus 482 ~~l~~~s~--------------dg---------~I~iwd~~~~~~~~~~-----------~~~~~~~~~~~i~~l~~sp- 526 (587)
++|+.+.. |. .|..|++......... ........-..+.++.+.+
T Consensus 202 n~L~l~~~~~~~~~~~~~~~~~D~Ivevd~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~ 281 (477)
T PF05935_consen 202 NLLILASETKYVDEDKDVDTVEDVIVEVDPTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPS 281 (477)
T ss_dssp -EEEEEEETTEE-TS-EE---S-EEEEE-TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETT
T ss_pred CEEEEEeecccccCCCCccEecCEEEEECCCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCC
Confidence 98888772 11 2334444332111110 0000011112367789988
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 558 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~ 558 (587)
++.+|+++-....|...|.+++++...+-.|.
T Consensus 282 dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 282 DDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp TTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred CCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 66666777666689999999999888876654
No 491
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=82.02 E-value=3.9 Score=45.20 Aligned_cols=67 Identities=21% Similarity=0.376 Sum_probs=44.9
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
..+++|.-+|. +.-+++++.||.|++|+. ..+..... -....+-..+.|...| |+++..|+.+.-|.
T Consensus 15 e~~~aiqshp~-~~s~v~~~~d~si~lfn~-~~r~qski-~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 15 EFTTAIQSHPG-GQSFVLAHQDGSIILFNF-IPRRQSKI-CEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred ceeeeeeecCC-CceEEEEecCCcEEEEee-cccchhhh-hhhcCCccceeeeccc--eEEEeccchhheee
Confidence 34778888898 899999999999999998 33322111 1122344556676554 66666777777775
No 492
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.56 E-value=73 Score=33.35 Aligned_cols=200 Identities=11% Similarity=0.160 Sum_probs=108.9
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceE-E--EEccCCCCCcEEEEEeCC---CcEEEEeCC--CCcEEEEE
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYV-V--KLNPDDDKQNILLAGMSD---KKIVQWDMN--TKEITQEY 422 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~-~--~~~~~~~~~~~l~sg~~d---g~I~iwD~~--t~~~~~~~ 422 (587)
...+++.....+-+.+||+. |+.++.+..+....+ + .|...+..-.++++...+ ..|++|.+. ++. +..+
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v 144 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDV 144 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEc
Confidence 45678888888999999996 566666655443221 1 122222211233444433 468888664 343 3332
Q ss_pred cc-------CCCCeeEEEEe--c-CCC-EEEEEECCCCEEEEECC---CC----eEEEEeecCCCcceeEEEEeCCCCEE
Q 007855 423 DQ-------HLGAVNTITFV--D-NNR-RFVTSSDDKSLRVWEFG---IP----VVIKYISEPHMHSMPSISLHPNTNWL 484 (587)
Q Consensus 423 ~~-------h~~~I~~i~~s--p-~~~-~l~s~s~Dg~I~iwd~~---~~----~~~~~~~~~~~~~i~~i~~sp~g~~l 484 (587)
.. ....+..+|+. + ++. ++++...+|.+..|.+. .+ ..++.+.. ...+-.|.......+|
T Consensus 145 ~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g~L 222 (381)
T PF02333_consen 145 TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETGRL 222 (381)
T ss_dssp CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTTEE
T ss_pred CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccCCE
Confidence 21 22346777775 3 344 56777889988888774 22 34566643 3478888999888899
Q ss_pred EEEECCCeEEEEEcCCceee--cccceecccccccceEEEEE--cCCC-CEE-EEEcCCCcEEEEeCCC-CeeEEEE
Q 007855 485 AAQSLDNQILIYSTRERFQL--NKKKRFAGHIVAGYACQVNF--SPDG-RFV-MSGDGEGKCWFWDWKS-CKVFRTL 554 (587)
Q Consensus 485 ~~~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~i~~l~~--spdg-~~L-~sgs~dG~I~vwd~~t-~~~~~~l 554 (587)
+.+-.+--|.-|+....... ..+....+.....-+-.|++ ..+| .|| +|.-.++...||+... ...+..|
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f 299 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSF 299 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEE
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceE
Confidence 99999988888887532111 11112222222333444554 3343 344 4555677899999875 3444444
No 493
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=81.49 E-value=86 Score=34.12 Aligned_cols=140 Identities=17% Similarity=0.196 Sum_probs=71.1
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc----eEEEEccCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP----YVVKLNPDD 393 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~----~~~~~~~~~ 393 (587)
.+.+.+.|. .|.....+.........+.+.++|.+++..+ ..+..+|+. |+.+..+...... .-+...++
T Consensus 127 ~~~~~~iD~--~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~~~HHD~~~l~n- 200 (477)
T PF05935_consen 127 SSYTYLIDN--NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYYDFHHDIDELPN- 200 (477)
T ss_dssp EEEEEEEET--TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-B-S-EEE-TT-
T ss_pred CceEEEECC--CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCcccccccccEECCC-
Confidence 444555554 4555544443322222266778888777655 789999985 6676666554422 23344443
Q ss_pred CCCcEEEEEeC-------------CCcEEEEeCCCCcEEEEEcc--CC-------------------------CCeeEEE
Q 007855 394 DKQNILLAGMS-------------DKKIVQWDMNTKEITQEYDQ--HL-------------------------GAVNTIT 433 (587)
Q Consensus 394 ~~~~~l~sg~~-------------dg~I~iwD~~t~~~~~~~~~--h~-------------------------~~I~~i~ 433 (587)
+++|+.+.. .-.|..+| .+|+.+..+.. |. -.++++.
T Consensus 201 --Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~ 277 (477)
T PF05935_consen 201 --GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSID 277 (477)
T ss_dssp --S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEE
T ss_pred --CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccE
Confidence 356666651 23466677 77877766421 11 2378999
Q ss_pred EecCCCEEEEEECC-CCEEEEECCCCeEEEEeec
Q 007855 434 FVDNNRRFVTSSDD-KSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 434 ~sp~~~~l~s~s~D-g~I~iwd~~~~~~~~~~~~ 466 (587)
+.+....|+.++.. ..|...|.++++....+..
T Consensus 278 yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~ 311 (477)
T PF05935_consen 278 YDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGP 311 (477)
T ss_dssp EETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-
T ss_pred EeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCC
Confidence 99855555555554 4788889888877666543
No 494
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=81.37 E-value=63 Score=32.54 Aligned_cols=235 Identities=11% Similarity=0.102 Sum_probs=126.1
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECC------CC-cEEEEeec------CCcceEEEEccCC---------CCCcEE
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTE------TG-QVIRTFST------GKIPYVVKLNPDD---------DKQNIL 399 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~------t~-~~i~~~~~------~~~~~~~~~~~~~---------~~~~~l 399 (587)
.-+.|+|+|.+.+.++....+...+||.. .. .++-.+.. ...+.-+.|+... .....+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 34679999998888888888999999986 22 22333321 1233334443221 112357
Q ss_pred EEEeCCCcEEEEeCCCCcE-----EEEEcc-CCCCe-eEEEEec--CCCEEEEE-ECCCCEEEEECCCCeEE--EEeecC
Q 007855 400 LAGMSDKKIVQWDMNTKEI-----TQEYDQ-HLGAV-NTITFVD--NNRRFVTS-SDDKSLRVWEFGIPVVI--KYISEP 467 (587)
Q Consensus 400 ~sg~~dg~I~iwD~~t~~~-----~~~~~~-h~~~I-~~i~~sp--~~~~l~s~-s~Dg~I~iwd~~~~~~~--~~~~~~ 467 (587)
+.++.+|+|.-|...-+.. ...+.. ..+.| ..+++.. .+.+|..+ -..++|.|||-.-.... ..+..+
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP 183 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP 183 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence 8899999999998643221 122221 12333 3455543 24454444 46788999985432211 001111
Q ss_pred ---CCcc---ee---------EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC------
Q 007855 468 ---HMHS---MP---------SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP------ 526 (587)
Q Consensus 468 ---~~~~---i~---------~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp------ 526 (587)
.... |. -..-.++...=+.+..-|.|-+||+...... ++ ...+..+..+ .|+..|
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~-r~-as~g~LNaPW--G~a~APa~FG~~ 259 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLR-RV-ASSGRLNAPW--GLAIAPESFGSL 259 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEE-Ee-ccCCcccCCc--eeeeChhhhCCC
Confidence 0000 11 1111112222222333478999998654322 11 1222322222 244433
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC------CEEEEEEcCC-----CCCEEEEEECC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHPL-----EQSKVATCGWD 580 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~------~V~~v~~sp~-----~~~~l~s~g~D 580 (587)
.|.+|+---.||+|..||..+++.+..+....+ .++.+.|... ...+.++++-+
T Consensus 260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGng~~~~~~ntLyFaAGp~ 324 (336)
T TIGR03118 260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGNGVSGGSANYLYFTAGPD 324 (336)
T ss_pred CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCCCcCCCCcceEEEEeCCC
Confidence 567777777899999999999998888876543 3577777651 12455565543
No 495
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.91 E-value=77 Score=33.18 Aligned_cols=51 Identities=10% Similarity=0.189 Sum_probs=25.5
Q ss_pred cEEEEEeCC-----------CcEEEEeCCCCcEEEEEccCCCCe--eEEEEecCCCEEEEEECC
Q 007855 397 NILLAGMSD-----------KKIVQWDMNTKEITQEYDQHLGAV--NTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 397 ~~l~sg~~d-----------g~I~iwD~~t~~~~~~~~~h~~~I--~~i~~sp~~~~l~s~s~D 447 (587)
.+++.|+.. ..+..||+.+.+-...-....... .+....-++.+++.|+.+
T Consensus 86 ~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 86 KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 466666643 247788887765433211111111 122221467777777754
No 496
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=80.82 E-value=7.1 Score=43.29 Aligned_cols=77 Identities=13% Similarity=0.241 Sum_probs=45.9
Q ss_pred CCCCEEEEEECCCeEEEEEcCC----ceeeccc--------ceecc---------cccccceEEEEEcC----CCCEEEE
Q 007855 479 PNTNWLAAQSLDNQILIYSTRE----RFQLNKK--------KRFAG---------HIVAGYACQVNFSP----DGRFVMS 533 (587)
Q Consensus 479 p~g~~l~~~s~dg~I~iwd~~~----~~~~~~~--------~~~~~---------~~~~~~i~~l~~sp----dg~~L~s 533 (587)
++...|+++..||.+....... +...... ..+.+ ......+..++++. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888888888877653 1111000 00111 11123455566666 7789999
Q ss_pred EcCCCcEEEEeCCCCeeEEEEe
Q 007855 534 GDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 534 gs~dG~I~vwd~~t~~~~~~l~ 555 (587)
.+.|+.|++||+.+++++.+..
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~ 257 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATID 257 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEec
Confidence 9999999999999999976653
No 497
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=80.52 E-value=0.26 Score=51.62 Aligned_cols=139 Identities=14% Similarity=0.219 Sum_probs=91.2
Q ss_pred eeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc
Q 007855 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 423 (587)
Q Consensus 344 ~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~ 423 (587)
....|-+.+.-++.++.+-.+..||-. ++.......... ++.+.++-....+++.+-..+.+.+||+.+....+.-.
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~--aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~ 114 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGK--ALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLES 114 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchh--HhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhc
Confidence 345677766668888888888888854 444444433333 33333433444567778888999999998653221111
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEE
Q 007855 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 486 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~ 486 (587)
+....-.-+.|++....++.+...|.+.|++.++.+.+.... .|...++++++.+.+..+..
T Consensus 115 gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~vil~ 176 (615)
T KOG2247|consen 115 GGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDYVILC 176 (615)
T ss_pred cCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccceeeec
Confidence 111222227888888889999899999999988776654442 27788999999987654433
No 498
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=80.32 E-value=80 Score=33.04 Aligned_cols=39 Identities=10% Similarity=0.282 Sum_probs=19.9
Q ss_pred cEEEEeCCCCcEEEEEccCC--CCeeEEEEecCCCEEEEEEC
Q 007855 407 KIVQWDMNTKEITQEYDQHL--GAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~~~h~--~~I~~i~~sp~~~~l~s~s~ 446 (587)
.|.+||..+..-...-.... ..-.++... ++++++.|+.
T Consensus 190 ~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~-~~~iYv~GG~ 230 (376)
T PRK14131 190 EVLSYDPSTNQWKNAGESPFLGTAGSAVVIK-GNKLWLINGE 230 (376)
T ss_pred eEEEEECCCCeeeECCcCCCCCCCcceEEEE-CCEEEEEeee
Confidence 58889988775443211111 112233333 5667777764
No 499
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.02 E-value=8.8 Score=25.54 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=28.3
Q ss_pred CCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 007855 526 PDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 526 pdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
|++++|+++. .++.|.++|..+++.+..+..... -..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGY-PFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence 5677776655 578999999999998888876333 234444
No 500
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.95 E-value=65 Score=38.47 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=25.3
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEec
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDV 326 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 326 (587)
.....++|+|. .++++.+...|.|+++-.
T Consensus 36 ~~~~~~afD~~-q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 36 STPSALAFDPT-QGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCcceeeccc-cceEEEEEecccEEEecc
Confidence 35677889998 899999999999999875
Done!