Query 007855
Match_columns 587
No_of_seqs 1164 out of 2472
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 12:10:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007855.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007855hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1got_B GT-beta; complex (GTP-b 100.0 6.6E-43 2.3E-47 360.9 46.7 293 284-587 43-340 (340)
2 1vyh_C Platelet-activating fac 100.0 3.4E-43 1.2E-47 372.8 41.5 287 289-587 101-408 (410)
3 3ow8_A WD repeat-containing pr 100.0 2.8E-42 9.5E-47 353.7 43.2 290 287-587 23-318 (321)
4 2pbi_B Guanine nucleotide-bind 100.0 2.6E-41 9E-46 351.2 45.4 292 286-587 54-354 (354)
5 2ynn_A Coatomer subunit beta'; 100.0 2.4E-41 8.1E-46 343.6 41.2 289 286-584 3-297 (304)
6 4ery_A WD repeat-containing pr 100.0 1.6E-40 5.3E-45 337.9 45.9 294 285-587 12-309 (312)
7 3iz6_a 40S ribosomal protein R 100.0 4.1E-42 1.4E-46 360.7 33.9 297 285-587 55-372 (380)
8 3frx_A Guanine nucleotide-bind 100.0 1.3E-39 4.5E-44 333.2 44.0 288 287-587 8-314 (319)
9 1nr0_A Actin interacting prote 100.0 8.9E-40 3E-44 364.5 41.5 340 239-587 57-564 (611)
10 3fm0_A Protein CIAO1; WDR39,SG 100.0 2E-39 6.8E-44 335.6 40.3 295 287-587 6-332 (345)
11 1nr0_A Actin interacting prote 100.0 1.6E-39 5.3E-44 362.5 41.3 326 240-587 146-608 (611)
12 4gqb_B Methylosome protein 50; 100.0 1.7E-39 5.7E-44 336.4 36.2 282 294-587 28-328 (344)
13 4g56_B MGC81050 protein; prote 100.0 9.7E-40 3.3E-44 339.9 33.7 283 293-587 39-340 (357)
14 4aow_A Guanine nucleotide-bind 100.0 6.9E-38 2.3E-42 320.5 44.7 289 287-587 29-334 (340)
15 1erj_A Transcriptional repress 100.0 2.5E-38 8.5E-43 333.4 42.1 289 289-587 58-386 (393)
16 2xzm_R RACK1; ribosome, transl 100.0 4.4E-38 1.5E-42 325.0 42.3 289 286-587 11-337 (343)
17 3zwl_B Eukaryotic translation 100.0 8.5E-38 2.9E-42 322.6 42.7 288 287-587 23-343 (369)
18 2hes_X YDR267CP; beta-propelle 100.0 1E-37 3.6E-42 320.7 41.7 292 286-587 4-325 (330)
19 2ymu_A WD-40 repeat protein; u 100.0 1.5E-37 5.3E-42 342.4 45.6 308 248-587 269-577 (577)
20 3gre_A Serine/threonine-protei 100.0 3.2E-38 1.1E-42 336.1 33.5 300 284-587 50-437 (437)
21 1r5m_A SIR4-interacting protei 100.0 3.7E-37 1.3E-41 324.1 38.2 331 242-587 46-422 (425)
22 1sq9_A Antiviral protein SKI8; 100.0 2.1E-37 7.1E-42 324.6 35.8 290 287-587 7-392 (397)
23 3dm0_A Maltose-binding peripla 100.0 9.5E-37 3.2E-41 345.0 43.8 289 287-587 373-690 (694)
24 3ei3_B DNA damage-binding prot 100.0 5.7E-37 1.9E-41 320.6 38.6 291 285-587 62-379 (383)
25 4a11_B DNA excision repair pro 100.0 4.1E-37 1.4E-41 322.3 37.6 299 286-587 33-362 (408)
26 1gxr_A ESG1, transducin-like e 100.0 5E-36 1.7E-40 305.7 44.3 282 290-587 45-334 (337)
27 2ymu_A WD-40 repeat protein; u 100.0 2.4E-36 8.1E-41 332.9 45.1 311 246-587 226-536 (577)
28 3odt_A Protein DOA1; ubiquitin 100.0 5.8E-36 2E-40 302.2 42.1 283 284-587 6-293 (313)
29 3i2n_A WD repeat-containing pr 100.0 1E-36 3.6E-41 313.6 36.9 296 286-587 8-350 (357)
30 1vyh_C Platelet-activating fac 100.0 1.2E-36 3.9E-41 322.6 37.1 284 239-546 106-410 (410)
31 3frx_A Guanine nucleotide-bind 100.0 4.2E-36 1.4E-40 307.2 38.1 297 238-548 14-318 (319)
32 3ow8_A WD repeat-containing pr 100.0 7.5E-36 2.6E-40 305.8 39.9 273 252-546 47-320 (321)
33 2ynn_A Coatomer subunit beta'; 100.0 4.1E-36 1.4E-40 305.0 37.6 249 331-587 4-256 (304)
34 1k8k_C P40, ARP2/3 complex 41 100.0 2.3E-36 8E-41 313.1 36.2 284 292-587 4-358 (372)
35 3k26_A Polycomb protein EED; W 100.0 2.9E-36 9.8E-41 311.1 32.7 289 291-587 13-363 (366)
36 3dwl_C Actin-related protein 2 100.0 5.4E-37 1.8E-41 319.6 25.1 287 291-587 6-376 (377)
37 4e54_B DNA damage-binding prot 100.0 8.2E-37 2.8E-41 326.1 26.8 295 286-587 109-427 (435)
38 1got_B GT-beta; complex (GTP-b 100.0 7.5E-35 2.6E-39 300.5 40.1 285 237-544 51-340 (340)
39 3mmy_A MRNA export factor; mRN 100.0 4.2E-35 1.4E-39 302.3 37.5 301 281-586 24-342 (368)
40 2pm9_A Protein WEB1, protein t 100.0 1.2E-36 4E-41 320.6 25.6 308 260-587 42-411 (416)
41 2pbi_B Guanine nucleotide-bind 100.0 1.8E-34 6.2E-39 299.6 39.6 288 237-544 60-354 (354)
42 3iz6_a 40S ribosomal protein R 100.0 1.7E-35 5.9E-40 310.2 31.7 288 246-549 71-377 (380)
43 4gqb_B Methylosome protein 50; 100.0 9.3E-35 3.2E-39 300.8 34.4 287 248-550 37-334 (344)
44 4ggc_A P55CDC, cell division c 100.0 5.3E-34 1.8E-38 288.7 39.1 290 283-587 8-312 (318)
45 3mkq_A Coatomer beta'-subunit; 100.0 1.6E-34 5.5E-39 331.4 39.5 292 286-587 3-299 (814)
46 1pgu_A Actin interacting prote 100.0 5.4E-34 1.9E-38 315.6 41.7 306 255-587 175-611 (615)
47 4aez_A CDC20, WD repeat-contai 100.0 2.7E-34 9.4E-39 302.9 36.8 281 290-587 85-377 (401)
48 4gga_A P55CDC, cell division c 100.0 6E-34 2E-38 302.4 39.5 275 298-587 107-392 (420)
49 2xzm_R RACK1; ribosome, transl 100.0 4.4E-34 1.5E-38 295.0 37.3 282 252-548 38-341 (343)
50 3vl1_A 26S proteasome regulato 100.0 8.4E-35 2.9E-39 307.3 32.0 316 248-587 63-416 (420)
51 3v7d_B Cell division control p 100.0 1.6E-33 5.3E-38 302.2 41.7 302 254-586 133-459 (464)
52 1r5m_A SIR4-interacting protei 100.0 5.7E-34 2E-38 299.8 37.5 281 293-587 42-358 (425)
53 2pm9_A Protein WEB1, protein t 100.0 4.3E-35 1.5E-39 308.6 27.4 283 297-587 13-334 (416)
54 1yfq_A Cell cycle arrest prote 100.0 9.4E-35 3.2E-39 297.7 29.1 281 290-582 5-315 (342)
55 3sfz_A APAF-1, apoptotic pepti 100.0 1.4E-33 4.8E-38 338.9 42.9 290 289-587 608-910 (1249)
56 3v7d_B Cell division control p 100.0 7.1E-33 2.4E-37 297.1 43.3 281 288-587 113-418 (464)
57 1erj_A Transcriptional repress 100.0 3.5E-33 1.2E-37 294.0 39.4 285 240-548 63-390 (393)
58 2hes_X YDR267CP; beta-propelle 100.0 2.1E-33 7.1E-38 288.6 36.7 275 255-547 26-328 (330)
59 2pm7_B Protein transport prote 100.0 1E-33 3.5E-38 286.3 33.7 255 289-546 2-284 (297)
60 4h5i_A Guanine nucleotide-exch 100.0 1.7E-34 5.9E-39 301.2 28.7 281 296-587 14-340 (365)
61 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.9E-33 6.4E-38 290.7 36.2 294 244-554 19-342 (345)
62 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.7E-33 1.6E-37 297.4 40.4 301 253-587 129-439 (445)
63 3vl1_A 26S proteasome regulato 100.0 3.7E-34 1.3E-38 302.4 30.8 278 298-587 58-362 (420)
64 1gxr_A ESG1, transducin-like e 100.0 1.2E-33 4.1E-38 288.0 32.5 278 295-587 8-293 (337)
65 2oaj_A Protein SNI1; WD40 repe 100.0 5.5E-33 1.9E-37 322.3 41.8 202 239-461 15-246 (902)
66 3sfz_A APAF-1, apoptotic pepti 100.0 2.7E-33 9.3E-38 336.3 40.6 318 250-587 624-1031(1249)
67 3bg1_A Protein SEC13 homolog; 100.0 2.3E-34 7.7E-39 293.9 26.6 250 291-587 8-290 (316)
68 2j04_B YDR362CP, TAU91; beta p 100.0 9.6E-35 3.3E-39 316.7 24.3 315 254-587 174-514 (524)
69 1pgu_A Actin interacting prote 100.0 1.3E-32 4.6E-37 304.4 41.1 323 242-587 19-363 (615)
70 4aow_A Guanine nucleotide-bind 100.0 3.2E-32 1.1E-36 278.3 40.4 297 237-549 34-339 (340)
71 3dw8_B Serine/threonine-protei 100.0 4.3E-33 1.5E-37 296.4 34.6 279 294-586 26-442 (447)
72 3dm0_A Maltose-binding peripla 100.0 5E-33 1.7E-37 314.5 37.1 295 238-546 379-692 (694)
73 1p22_A F-BOX/WD-repeat protein 100.0 1E-32 3.4E-37 294.2 36.4 273 290-587 127-411 (435)
74 4g56_B MGC81050 protein; prote 100.0 1.6E-33 5.3E-38 293.0 29.1 271 302-587 11-298 (357)
75 2ovr_B FBW7, F-BOX/WD repeat p 100.0 5.3E-32 1.8E-36 289.2 41.2 274 288-587 110-388 (445)
76 4ery_A WD repeat-containing pr 100.0 1.1E-31 3.9E-36 272.4 40.6 284 239-546 21-311 (312)
77 2oaj_A Protein SNI1; WD40 repe 100.0 4.4E-33 1.5E-37 323.2 33.9 333 246-587 103-658 (902)
78 3f3f_A Nucleoporin SEH1; struc 100.0 8.9E-33 3E-37 281.6 31.1 290 289-587 4-334 (351)
79 3jrp_A Fusion protein of prote 100.0 1.3E-32 4.5E-37 285.1 32.8 260 287-548 2-288 (379)
80 2pm7_B Protein transport prote 100.0 2.1E-32 7.2E-37 276.6 30.9 251 333-587 2-282 (297)
81 2aq5_A Coronin-1A; WD40 repeat 100.0 7.5E-33 2.6E-37 291.7 26.6 282 298-587 36-339 (402)
82 1sq9_A Antiviral protein SKI8; 100.0 1.2E-31 4.2E-36 280.6 31.8 297 239-549 14-397 (397)
83 3mkq_A Coatomer beta'-subunit; 100.0 2.8E-31 9.5E-36 304.5 37.1 324 238-587 10-383 (814)
84 3zwl_B Eukaryotic translation 100.0 2.2E-30 7.6E-35 266.9 38.6 288 238-551 29-350 (369)
85 3k26_A Polycomb protein EED; W 100.0 7.2E-32 2.5E-36 278.1 25.2 246 295-547 68-366 (366)
86 3i2n_A WD repeat-containing pr 100.0 3.5E-31 1.2E-35 272.3 28.0 294 240-550 17-356 (357)
87 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.4E-30 8.3E-35 277.1 35.4 280 297-586 5-387 (450)
88 3jrp_A Fusion protein of prote 100.0 6.6E-31 2.3E-35 272.2 29.6 253 331-587 2-284 (379)
89 1k8k_C P40, ARP2/3 complex 41 100.0 2.7E-30 9.2E-35 267.4 33.8 287 243-549 10-363 (372)
90 2j04_B YDR362CP, TAU91; beta p 100.0 1.1E-31 3.9E-36 292.5 23.9 273 285-587 123-425 (524)
91 4aez_A CDC20, WD repeat-contai 100.0 4.5E-30 1.5E-34 270.7 35.1 274 257-555 107-388 (401)
92 4a11_B DNA excision repair pro 100.0 1.9E-30 6.5E-35 271.6 30.8 332 239-587 41-402 (408)
93 3ei3_B DNA damage-binding prot 100.0 4.9E-30 1.7E-34 267.9 31.7 284 239-547 71-382 (383)
94 4gga_A P55CDC, cell division c 100.0 2.3E-29 7.8E-34 267.0 35.6 276 261-563 123-411 (420)
95 3vu4_A KMHSV2; beta-propeller 100.0 1.1E-29 3.7E-34 263.7 31.9 280 285-587 8-333 (355)
96 2xyi_A Probable histone-bindin 100.0 6.1E-30 2.1E-34 272.5 30.2 257 289-587 121-407 (430)
97 3odt_A Protein DOA1; ubiquitin 100.0 7E-29 2.4E-33 250.2 35.5 285 239-555 16-304 (313)
98 3lrv_A PRE-mRNA-splicing facto 100.0 6.4E-30 2.2E-34 263.6 28.3 270 304-586 44-329 (343)
99 2aq5_A Coronin-1A; WD40 repeat 100.0 5.8E-30 2E-34 269.6 27.8 279 254-550 48-345 (402)
100 3jro_A Fusion protein of prote 100.0 4.1E-30 1.4E-34 293.3 28.6 256 289-547 2-285 (753)
101 3dwl_C Actin-related protein 2 100.0 7E-31 2.4E-35 273.3 19.9 243 336-586 7-277 (377)
102 3bws_A Protein LP49; two-domai 100.0 9.3E-29 3.2E-33 262.2 35.9 285 287-587 114-429 (433)
103 4e54_B DNA damage-binding prot 100.0 4.4E-30 1.5E-34 273.9 25.8 286 245-551 123-434 (435)
104 1l0q_A Surface layer protein; 100.0 1.9E-28 6.4E-33 256.2 37.5 264 309-587 2-272 (391)
105 3gre_A Serine/threonine-protei 100.0 4.9E-31 1.7E-35 280.5 17.7 266 304-587 35-356 (437)
106 3dw8_B Serine/threonine-protei 100.0 6.7E-30 2.3E-34 271.8 24.1 246 338-587 26-370 (447)
107 1p22_A F-BOX/WD-repeat protein 100.0 8.4E-29 2.9E-33 263.8 32.4 283 253-567 143-433 (435)
108 1yfq_A Cell cycle arrest prote 100.0 2.6E-29 8.9E-34 257.1 26.8 241 334-587 5-279 (342)
109 3f3f_A Nucleoporin SEH1; struc 100.0 9.5E-29 3.2E-33 251.7 30.3 302 238-555 8-345 (351)
110 1l0q_A Surface layer protein; 100.0 1.1E-27 3.7E-32 250.5 39.0 278 255-560 4-288 (391)
111 4h5i_A Guanine nucleotide-exch 100.0 6.3E-29 2.1E-33 259.0 29.2 287 247-547 20-343 (365)
112 4ggc_A P55CDC, cell division c 100.0 1.4E-27 4.8E-32 241.4 36.4 261 261-548 43-316 (318)
113 2j04_A TAU60, YPL007P, hypothe 100.0 1.9E-29 6.4E-34 270.4 22.6 265 293-587 12-294 (588)
114 2w18_A PALB2, fancn, partner a 100.0 1.3E-27 4.4E-32 241.5 32.4 288 287-587 26-354 (356)
115 3jro_A Fusion protein of prote 100.0 7.7E-29 2.6E-33 282.8 24.2 251 333-587 2-282 (753)
116 3vu4_A KMHSV2; beta-propeller 100.0 7.2E-28 2.5E-32 249.9 27.8 247 323-587 3-268 (355)
117 3mmy_A MRNA export factor; mRN 100.0 1.9E-27 6.6E-32 244.8 30.1 282 239-545 37-344 (368)
118 3bg1_A Protein SEC13 homolog; 100.0 2.8E-28 9.6E-33 248.7 22.6 248 239-499 11-292 (316)
119 4gq1_A NUP37; propeller, trans 100.0 4.5E-28 1.6E-32 255.0 22.4 255 294-583 87-383 (393)
120 2j04_A TAU60, YPL007P, hypothe 100.0 8.7E-28 3E-32 257.5 21.4 245 294-579 83-350 (588)
121 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.2E-26 7.6E-31 246.2 32.0 250 291-546 97-390 (450)
122 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-27 5.1E-32 245.9 21.1 227 348-587 44-289 (343)
123 3bws_A Protein LP49; two-domai 99.9 5E-25 1.7E-29 233.4 33.9 271 250-547 131-432 (433)
124 1nir_A Nitrite reductase; hemo 99.9 6.3E-24 2.2E-28 232.7 38.8 315 249-587 145-511 (543)
125 2xyi_A Probable histone-bindin 99.9 1.6E-24 5.4E-29 230.6 30.1 257 239-501 126-411 (430)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.6E-24 8.8E-29 228.1 29.0 265 290-569 111-408 (415)
127 4gq1_A NUP37; propeller, trans 99.9 2.4E-25 8.4E-30 234.1 18.9 238 248-499 96-388 (393)
128 2w18_A PALB2, fancn, partner a 99.9 1.2E-23 4E-28 212.6 29.5 179 317-498 155-355 (356)
129 1nir_A Nitrite reductase; hemo 99.9 1.3E-23 4.3E-28 230.4 30.5 274 304-587 145-455 (543)
130 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-23 4.3E-28 222.8 27.2 275 297-587 63-384 (415)
131 1ri6_A Putative isomerase YBHE 99.9 2.2E-22 7.6E-27 205.2 33.1 272 310-587 6-305 (343)
132 3u4y_A Uncharacterized protein 99.9 2E-22 6.9E-27 205.4 31.5 274 303-587 4-301 (331)
133 3vgz_A Uncharacterized protein 99.9 2.5E-21 8.6E-26 198.6 38.5 272 295-580 39-334 (353)
134 2ecf_A Dipeptidyl peptidase IV 99.9 9.7E-23 3.3E-27 231.5 28.6 279 296-587 36-410 (741)
135 1pby_B Quinohemoprotein amine 99.9 7.8E-22 2.7E-26 200.6 30.6 261 310-587 2-307 (337)
136 2ojh_A Uncharacterized protein 99.9 9.4E-22 3.2E-26 195.3 24.1 251 314-580 17-292 (297)
137 1ri6_A Putative isomerase YBHE 99.9 2.6E-20 8.7E-25 189.8 35.0 295 255-569 7-333 (343)
138 3u4y_A Uncharacterized protein 99.9 2.3E-20 7.8E-25 190.1 32.9 274 286-568 30-324 (331)
139 1xfd_A DIP, dipeptidyl aminope 99.9 9.8E-22 3.4E-26 222.4 22.2 277 298-587 18-390 (723)
140 1pby_B Quinohemoprotein amine 99.9 1.1E-20 3.9E-25 191.9 27.6 258 287-559 22-322 (337)
141 3o4h_A Acylamino-acid-releasin 99.9 4.8E-21 1.6E-25 211.7 26.3 267 296-587 21-312 (582)
142 1k32_A Tricorn protease; prote 99.9 2.7E-20 9.1E-25 219.8 32.5 279 289-587 196-499 (1045)
143 2z3z_A Dipeptidyl aminopeptida 99.9 1.8E-20 6.1E-25 211.7 29.7 275 296-587 81-432 (706)
144 2ecf_A Dipeptidyl peptidase IV 99.9 1.4E-20 4.9E-25 213.6 28.7 265 298-577 110-442 (741)
145 2z3z_A Dipeptidyl aminopeptida 99.9 7.1E-21 2.4E-25 215.0 25.9 270 299-581 28-378 (706)
146 3hfq_A Uncharacterized protein 99.9 2.4E-19 8.1E-24 184.2 33.4 264 317-586 14-313 (347)
147 3vgz_A Uncharacterized protein 99.9 2E-19 6.7E-24 184.4 30.8 243 339-587 39-300 (353)
148 1jmx_B Amine dehydrogenase; ox 99.9 1.6E-19 5.5E-24 184.5 29.3 260 301-587 4-322 (349)
149 2ojh_A Uncharacterized protein 99.9 8.4E-20 2.9E-24 181.2 25.2 239 290-538 35-293 (297)
150 1xfd_A DIP, dipeptidyl aminope 99.8 9.2E-20 3.2E-24 206.2 27.0 283 287-579 48-430 (723)
151 3scy_A Hypothetical bacterial 99.8 1.9E-18 6.5E-23 178.6 34.6 271 309-586 13-333 (361)
152 1k32_A Tricorn protease; prote 99.8 2.1E-19 7.2E-24 212.1 29.9 275 295-587 294-634 (1045)
153 3pe7_A Oligogalacturonate lyas 99.8 1.7E-19 5.8E-24 187.9 25.8 292 287-586 21-378 (388)
154 3hfq_A Uncharacterized protein 99.8 1.4E-18 4.9E-23 178.3 30.9 252 293-551 36-323 (347)
155 3scy_A Hypothetical bacterial 99.8 6.3E-18 2.2E-22 174.7 32.7 264 295-567 48-360 (361)
156 1jof_A Carboxy-CIS,CIS-muconat 99.8 5E-18 1.7E-22 176.3 28.7 274 311-587 4-338 (365)
157 1z68_A Fibroblast activation p 99.8 6.6E-19 2.3E-23 199.3 21.7 276 301-587 20-388 (719)
158 1jmx_B Amine dehydrogenase; ox 99.8 5.2E-17 1.8E-21 165.8 30.6 279 250-557 8-335 (349)
159 2oit_A Nucleoporin 214KDA; NH2 99.8 4.1E-18 1.4E-22 181.4 22.3 201 296-501 36-279 (434)
160 3o4h_A Acylamino-acid-releasin 99.8 9E-18 3.1E-22 185.3 22.0 231 339-587 20-273 (582)
161 3c5m_A Oligogalacturonate lyas 99.8 3.5E-17 1.2E-21 170.3 23.3 271 299-586 38-378 (396)
162 2oiz_A Aromatic amine dehydrog 99.8 4.1E-16 1.4E-20 161.8 30.7 268 287-570 42-359 (361)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.7E-16 9.4E-21 163.1 28.5 247 295-548 38-342 (365)
164 2oit_A Nucleoporin 214KDA; NH2 99.8 2.9E-16 1E-20 167.0 28.7 199 294-497 90-330 (434)
165 1z68_A Fibroblast activation p 99.7 1.4E-17 4.8E-22 188.4 18.3 283 289-587 49-440 (719)
166 4a5s_A Dipeptidyl peptidase 4 99.7 2.8E-16 9.7E-21 178.6 26.7 268 298-578 18-382 (740)
167 3azo_A Aminopeptidase; POP fam 99.7 4.8E-16 1.6E-20 174.0 28.1 285 291-586 18-363 (662)
168 1q7f_A NHL, brain tumor CG1071 99.7 3.5E-15 1.2E-19 148.7 31.3 238 338-587 27-277 (286)
169 1q7f_A NHL, brain tumor CG1071 99.7 4.6E-15 1.6E-19 147.8 31.5 241 294-548 27-281 (286)
170 2oiz_A Aromatic amine dehydrog 99.7 7.8E-16 2.7E-20 159.7 26.6 257 317-587 29-331 (361)
171 3fvz_A Peptidyl-glycine alpha- 99.7 4.1E-15 1.4E-19 152.0 27.9 240 340-587 23-319 (329)
172 2dg1_A DRP35, lactonase; beta 99.7 2.8E-15 9.7E-20 152.7 26.4 269 297-580 6-300 (333)
173 3fvz_A Peptidyl-glycine alpha- 99.7 6.1E-15 2.1E-19 150.7 28.7 243 297-547 24-322 (329)
174 3dsm_A Uncharacterized protein 99.7 2.6E-14 9.1E-19 146.0 31.5 253 298-566 45-319 (328)
175 2gop_A Trilobed protease; beta 99.7 3E-14 1E-18 145.7 30.2 254 298-586 16-327 (347)
176 2z2n_A Virginiamycin B lyase; 99.7 7.5E-13 2.6E-17 131.7 38.0 275 292-584 10-290 (299)
177 1qks_A Cytochrome CD1 nitrite 99.6 7.3E-13 2.5E-17 145.0 38.8 294 285-587 186-535 (567)
178 3dsm_A Uncharacterized protein 99.6 7.7E-14 2.6E-18 142.5 29.1 256 317-587 15-299 (328)
179 3pe7_A Oligogalacturonate lyas 99.6 3.8E-14 1.3E-18 147.2 27.0 254 324-587 15-326 (388)
180 1qks_A Cytochrome CD1 nitrite 99.6 4.2E-13 1.4E-17 146.9 36.3 273 309-587 167-474 (567)
181 4a5s_A Dipeptidyl peptidase 4 99.6 4.1E-15 1.4E-19 169.0 19.9 237 341-586 17-349 (740)
182 3azo_A Aminopeptidase; POP fam 99.6 1.9E-14 6.6E-19 160.9 24.8 273 260-557 44-379 (662)
183 3e5z_A Putative gluconolactona 99.6 3.3E-13 1.1E-17 135.1 29.8 244 287-550 18-289 (296)
184 3e5z_A Putative gluconolactona 99.6 3E-13 1E-17 135.5 28.7 241 330-585 17-282 (296)
185 2xdw_A Prolyl endopeptidase; a 99.6 2.5E-13 8.5E-18 153.6 30.1 243 339-587 123-411 (710)
186 3c5m_A Oligogalacturonate lyas 99.6 4.5E-14 1.5E-18 146.7 19.5 251 323-587 14-326 (396)
187 2dg1_A DRP35, lactonase; beta 99.6 4.1E-12 1.4E-16 129.1 33.6 242 287-538 35-301 (333)
188 3no2_A Uncharacterized protein 99.6 1.2E-12 4E-17 130.4 28.7 244 309-564 5-271 (276)
189 2gop_A Trilobed protease; beta 99.6 1E-12 3.4E-17 134.3 26.9 232 297-559 59-341 (347)
190 2xdw_A Prolyl endopeptidase; a 99.6 1.4E-12 4.8E-17 147.4 30.4 244 294-549 122-416 (710)
191 1rwi_B Serine/threonine-protei 99.6 7.2E-13 2.5E-17 130.3 24.4 239 298-549 25-266 (270)
192 2qc5_A Streptogramin B lactona 99.6 2.9E-11 9.8E-16 120.2 36.3 274 294-586 17-296 (300)
193 2mad_H Methylamine dehydrogena 99.5 2.9E-11 9.8E-16 125.7 37.0 269 305-587 29-347 (373)
194 1rwi_B Serine/threonine-protei 99.5 1.4E-12 4.9E-17 128.1 24.2 235 342-587 25-261 (270)
195 2bkl_A Prolyl endopeptidase; m 99.5 2.1E-13 7.1E-18 153.8 19.8 241 338-587 118-394 (695)
196 2mad_H Methylamine dehydrogena 99.5 5.9E-11 2E-15 123.4 36.8 252 286-554 57-357 (373)
197 3sjl_D Methylamine dehydrogena 99.5 5.1E-12 1.8E-16 130.6 27.7 271 305-587 41-360 (386)
198 3no2_A Uncharacterized protein 99.5 8.7E-12 3E-16 124.1 27.9 212 351-577 4-230 (276)
199 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 6.5E-12 2.2E-16 126.2 26.6 241 338-587 15-296 (314)
200 3sjl_D Methylamine dehydrogena 99.5 1.5E-11 5.1E-16 127.1 29.5 266 286-568 69-383 (386)
201 2bkl_A Prolyl endopeptidase; m 99.5 6.5E-13 2.2E-17 149.7 20.9 242 294-550 118-400 (695)
202 2z2n_A Virginiamycin B lyase; 99.5 1.1E-10 3.9E-15 115.8 34.9 240 294-549 54-297 (299)
203 1yr2_A Prolyl oligopeptidase; 99.5 1E-11 3.5E-16 141.0 27.0 238 339-587 161-438 (741)
204 3g4e_A Regucalcin; six bladed 99.5 1.5E-10 5.1E-15 116.1 32.2 233 338-580 10-263 (297)
205 3hrp_A Uncharacterized protein 99.5 8.2E-11 2.8E-15 123.8 31.5 241 297-545 131-408 (409)
206 3c75_H MADH, methylamine dehyd 99.4 2.2E-11 7.4E-16 128.0 26.8 256 319-587 99-399 (426)
207 2qe8_A Uncharacterized protein 99.4 1.7E-11 5.8E-16 125.8 24.1 270 287-582 10-313 (343)
208 3c75_H MADH, methylamine dehyd 99.4 5.3E-11 1.8E-15 125.0 27.8 255 285-554 108-409 (426)
209 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.3E-10 7.9E-15 114.7 31.0 241 292-547 13-299 (314)
210 3hrp_A Uncharacterized protein 99.4 2.5E-10 8.7E-15 120.1 31.1 235 341-586 131-406 (409)
211 2qc5_A Streptogramin B lactona 99.4 1.7E-09 5.9E-14 107.2 33.6 236 294-545 59-298 (300)
212 1yr2_A Prolyl oligopeptidase; 99.4 1.1E-10 3.9E-15 132.4 27.3 243 294-549 160-443 (741)
213 2ghs_A AGR_C_1268P; regucalcin 99.3 2.8E-09 9.5E-14 108.4 32.2 226 342-580 50-293 (326)
214 3dr2_A Exported gluconolactona 99.3 7.3E-10 2.5E-14 111.5 27.1 239 332-585 36-302 (305)
215 1xip_A Nucleoporin NUP159; bet 99.3 4.1E-11 1.4E-15 124.2 17.8 174 298-488 39-232 (388)
216 3q7m_A Lipoprotein YFGL, BAMB; 99.3 3.5E-09 1.2E-13 109.5 32.2 260 309-587 103-375 (376)
217 1mda_H Methylamine dehydrogena 99.3 1.3E-10 4.4E-15 120.1 20.4 261 284-568 54-366 (368)
218 3dr2_A Exported gluconolactona 99.3 1.4E-09 5E-14 109.2 26.5 239 287-544 35-303 (305)
219 1kb0_A Quinohemoprotein alcoho 99.3 4.1E-10 1.4E-14 126.2 24.0 273 309-587 77-504 (677)
220 3g4e_A Regucalcin; six bladed 99.3 3.7E-09 1.3E-13 105.9 28.7 230 292-536 8-261 (297)
221 1xip_A Nucleoporin NUP159; bet 99.2 1.1E-10 3.8E-15 121.0 17.1 176 342-534 39-231 (388)
222 1yiq_A Quinohemoprotein alcoho 99.2 5.1E-10 1.7E-14 125.7 23.5 273 309-587 70-502 (689)
223 3q7m_A Lipoprotein YFGL, BAMB; 99.2 4.2E-09 1.4E-13 108.9 28.1 257 309-587 53-334 (376)
224 1mda_H Methylamine dehydrogena 99.2 9.5E-10 3.2E-14 113.5 22.4 248 320-587 47-343 (368)
225 1yiq_A Quinohemoprotein alcoho 99.2 3.8E-09 1.3E-13 118.6 28.5 259 309-578 121-537 (689)
226 2ghs_A AGR_C_1268P; regucalcin 99.2 4.1E-08 1.4E-12 99.7 33.4 223 297-537 49-292 (326)
227 3iuj_A Prolyl endopeptidase; h 99.2 1.8E-09 6.3E-14 121.5 24.2 242 294-550 126-408 (693)
228 1kb0_A Quinohemoprotein alcoho 99.2 1.3E-08 4.3E-13 114.1 30.0 257 309-576 128-537 (677)
229 3iuj_A Prolyl endopeptidase; h 99.1 2.5E-09 8.4E-14 120.4 22.9 237 339-587 127-402 (693)
230 2ece_A 462AA long hypothetical 99.1 1E-07 3.5E-12 99.2 30.2 226 347-578 88-399 (462)
231 2ece_A 462AA long hypothetical 99.1 4.6E-08 1.6E-12 101.8 27.2 225 306-535 93-399 (462)
232 2hz6_A Endoplasmic reticulum t 99.1 5.6E-11 1.9E-15 123.4 4.9 223 309-549 9-238 (369)
233 3hxj_A Pyrrolo-quinoline quino 99.1 7.7E-09 2.6E-13 104.3 19.8 262 295-586 58-320 (330)
234 2hz6_A Endoplasmic reticulum t 99.0 1.2E-10 4.1E-15 120.8 5.7 195 351-563 8-207 (369)
235 1kv9_A Type II quinohemoprotei 99.0 3E-08 1E-12 110.9 22.7 273 309-587 66-485 (668)
236 1npe_A Nidogen, entactin; glyc 99.0 1.4E-06 4.9E-11 85.3 32.3 247 311-569 3-261 (267)
237 1fwx_A Nitrous oxide reductase 99.0 7.2E-08 2.5E-12 103.8 24.4 229 345-578 89-406 (595)
238 2iwa_A Glutamine cyclotransfer 99.0 1.8E-07 6.3E-12 91.5 24.6 212 331-548 10-238 (266)
239 2qe8_A Uncharacterized protein 98.9 1E-07 3.6E-12 97.4 20.2 225 294-543 64-317 (343)
240 3hxj_A Pyrrolo-quinoline quino 98.9 1.3E-08 4.4E-13 102.7 13.2 250 310-587 31-281 (330)
241 2iwa_A Glutamine cyclotransfer 98.9 4.5E-07 1.6E-11 88.7 23.5 206 372-585 9-232 (266)
242 3nok_A Glutaminyl cyclase; bet 98.9 3.6E-07 1.2E-11 88.5 22.3 195 373-577 44-253 (268)
243 3nol_A Glutamine cyclotransfer 98.9 6.1E-07 2.1E-11 86.9 23.7 195 373-577 32-243 (262)
244 3nol_A Glutamine cyclotransfer 98.8 4.8E-07 1.7E-11 87.6 22.0 198 331-536 32-244 (262)
245 1w6s_A Methanol dehydrogenase 98.8 1E-06 3.5E-11 96.8 26.9 276 309-587 62-500 (599)
246 2ad6_A Methanol dehydrogenase 98.8 1E-06 3.5E-11 96.5 26.5 274 309-587 62-491 (571)
247 4a2l_A BT_4663, two-component 98.8 2.4E-05 8.1E-10 89.2 38.3 277 295-586 213-522 (795)
248 1kv9_A Type II quinohemoprotei 98.8 3E-06 1E-10 94.7 29.9 239 309-558 117-499 (668)
249 1fwx_A Nitrous oxide reductase 98.8 2E-07 6.8E-12 100.3 19.4 235 307-549 100-433 (595)
250 3mbr_X Glutamine cyclotransfer 98.8 3.2E-06 1.1E-10 81.2 25.5 197 373-577 10-222 (243)
251 2ad6_A Methanol dehydrogenase 98.8 2.7E-06 9.3E-11 93.1 28.4 238 309-558 115-505 (571)
252 1flg_A Protein (quinoprotein e 98.7 4.6E-06 1.6E-10 91.5 28.7 271 310-587 69-513 (582)
253 4a2l_A BT_4663, two-component 98.7 2.9E-05 1E-09 88.4 35.8 276 299-586 175-476 (795)
254 1npe_A Nidogen, entactin; glyc 98.7 2.2E-05 7.5E-10 76.7 30.1 222 297-529 36-263 (267)
255 3mbr_X Glutamine cyclotransfer 98.7 1.3E-05 4.3E-10 77.0 27.1 193 285-488 8-222 (243)
256 3nok_A Glutaminyl cyclase; bet 98.7 3.9E-06 1.3E-10 81.2 23.6 190 287-488 44-253 (268)
257 2fp8_A Strictosidine synthase; 98.7 6.1E-06 2.1E-10 83.2 25.4 234 341-586 19-309 (322)
258 2p4o_A Hypothetical protein; p 98.7 3.6E-05 1.2E-09 76.9 30.7 237 331-579 23-277 (306)
259 1w6s_A Methanol dehydrogenase 98.7 9E-06 3.1E-10 89.2 27.9 254 312-577 124-534 (599)
260 2fp8_A Strictosidine synthase; 98.6 2.1E-05 7.3E-10 79.1 28.6 244 291-547 13-313 (322)
261 2p4o_A Hypothetical protein; p 98.6 2.1E-05 7.1E-10 78.7 27.8 239 284-538 20-279 (306)
262 1flg_A Protein (quinoprotein e 98.6 3.8E-05 1.3E-09 84.2 31.1 259 309-577 117-547 (582)
263 3v9f_A Two-component system se 98.5 0.00016 5.6E-09 82.1 34.1 278 296-587 257-565 (781)
264 3v64_C Agrin; beta propeller, 98.5 0.00014 4.9E-09 74.2 29.8 247 296-556 33-284 (349)
265 3v65_B Low-density lipoprotein 98.4 0.0002 6.9E-09 74.2 29.8 255 298-566 78-337 (386)
266 3tc9_A Hypothetical hydrolase; 98.4 7.7E-05 2.6E-09 78.6 26.5 240 342-586 138-426 (430)
267 1k3i_A Galactose oxidase precu 98.4 6.1E-06 2.1E-10 92.0 18.7 271 301-579 190-530 (656)
268 3v9f_A Two-component system se 98.4 0.00059 2E-08 77.4 35.1 273 297-586 211-520 (781)
269 2xbg_A YCF48-like protein; pho 98.4 0.0018 6.1E-08 65.2 35.0 269 297-587 36-319 (327)
270 3tc9_A Hypothetical hydrolase; 98.4 0.00016 5.6E-09 76.0 28.1 241 298-545 138-428 (430)
271 3p5b_L Low density lipoprotein 98.4 0.0014 4.7E-08 68.2 34.0 244 311-564 85-337 (400)
272 1ijq_A LDL receptor, low-densi 98.4 0.0023 7.9E-08 64.1 34.5 228 319-555 10-246 (316)
273 4hw6_A Hypothetical protein, I 98.3 0.00018 6.2E-09 75.7 26.2 239 342-586 140-429 (433)
274 2xzh_A Clathrin heavy chain 1; 98.3 0.0016 5.6E-08 64.4 30.5 253 318-583 48-325 (365)
275 3v64_C Agrin; beta propeller, 98.3 0.00052 1.8E-08 70.0 27.8 230 344-585 37-270 (349)
276 1ijq_A LDL receptor, low-densi 98.2 0.0011 3.9E-08 66.4 29.4 221 355-586 4-234 (316)
277 4hw6_A Hypothetical protein, I 98.2 0.0006 2E-08 71.8 28.3 242 298-546 140-432 (433)
278 3sov_A LRP-6, low-density lipo 98.2 0.0004 1.4E-08 69.8 25.1 229 318-555 12-246 (318)
279 1bpo_A Protein (clathrin); cla 98.2 0.008 2.7E-07 61.8 35.1 253 318-583 47-324 (494)
280 3qqz_A Putative uncharacterize 98.2 0.00083 2.9E-08 65.0 25.0 205 335-545 21-251 (255)
281 3v65_B Low-density lipoprotein 98.1 0.00069 2.4E-08 70.1 25.6 230 345-586 81-314 (386)
282 3kya_A Putative phosphatase; s 98.1 0.0013 4.5E-08 69.8 27.8 250 298-552 140-480 (496)
283 1k3i_A Galactose oxidase precu 98.1 0.00021 7.3E-09 79.4 22.5 237 295-536 241-530 (656)
284 3m0c_C LDL receptor, low-densi 98.1 0.0054 1.8E-07 69.3 32.7 245 299-555 387-640 (791)
285 2xe4_A Oligopeptidase B; hydro 98.1 0.00042 1.4E-08 78.3 23.8 197 294-498 170-398 (751)
286 3p5b_L Low density lipoprotein 98.0 0.0022 7.7E-08 66.6 27.3 222 354-586 85-316 (400)
287 3qqz_A Putative uncharacterize 98.0 0.016 5.5E-07 55.9 30.1 203 290-498 20-251 (255)
288 2p9w_A MAL S 1 allergenic prot 97.9 0.0055 1.9E-07 61.2 26.4 207 292-500 8-265 (334)
289 3sov_A LRP-6, low-density lipo 97.9 0.0019 6.5E-08 64.9 22.5 216 361-586 12-234 (318)
290 3ei3_A DNA damage-binding prot 97.9 0.044 1.5E-06 64.5 37.0 230 288-532 504-752 (1158)
291 4a0p_A LRP6, LRP-6, low-densit 97.8 0.021 7.3E-07 62.8 31.8 227 317-555 13-245 (628)
292 3amr_A 3-phytase; beta-propell 97.8 0.0074 2.5E-07 60.7 25.3 185 309-499 40-262 (355)
293 3kya_A Putative phosphatase; s 97.8 0.005 1.7E-07 65.3 25.4 239 343-586 141-471 (496)
294 3ei3_A DNA damage-binding prot 97.8 0.014 4.8E-07 68.7 31.8 216 363-585 808-1057(1158)
295 3s94_A LRP-6, low-density lipo 97.8 0.035 1.2E-06 61.0 33.0 280 297-585 84-418 (619)
296 3amr_A 3-phytase; beta-propell 97.8 0.0027 9.2E-08 63.9 21.9 196 386-587 30-260 (355)
297 2p9w_A MAL S 1 allergenic prot 97.7 0.017 5.8E-07 57.6 25.4 161 339-500 11-215 (334)
298 2xe4_A Oligopeptidase B; hydro 97.7 0.0016 5.5E-08 73.5 20.4 192 387-586 179-394 (751)
299 3m0c_C LDL receptor, low-densi 97.7 0.012 4E-07 66.5 26.7 215 360-584 402-626 (791)
300 3s94_A LRP-6, low-density lipo 97.6 0.017 5.7E-07 63.6 27.1 228 318-554 17-250 (619)
301 1n7d_A LDL receptor, low-densi 97.6 0.00025 8.6E-09 79.4 11.7 239 318-565 385-632 (699)
302 2vpj_A Kelch-like protein 12; 97.6 0.011 3.8E-07 58.2 22.6 228 309-549 15-280 (301)
303 3ii7_A Kelch-like protein 7; p 97.6 0.023 7.8E-07 56.1 24.6 227 309-549 12-274 (306)
304 2xbg_A YCF48-like protein; pho 97.5 0.032 1.1E-06 55.9 25.7 230 296-544 79-319 (327)
305 2xn4_A Kelch-like protein 2; s 97.5 0.021 7E-07 56.3 23.7 226 310-549 17-278 (302)
306 2ism_A Putative oxidoreductase 97.5 0.055 1.9E-06 54.9 26.7 232 341-581 31-337 (352)
307 4a0p_A LRP6, LRP-6, low-densit 97.4 0.08 2.7E-06 58.2 28.3 219 354-585 8-232 (628)
308 2ism_A Putative oxidoreductase 97.3 0.08 2.7E-06 53.6 25.9 227 296-535 30-333 (352)
309 4asc_A Kelch repeat and BTB do 97.3 0.041 1.4E-06 54.5 22.4 227 311-550 7-280 (315)
310 2vpj_A Kelch-like protein 12; 97.3 0.017 5.9E-07 56.7 19.3 217 351-581 14-264 (301)
311 1n7d_A LDL receptor, low-densi 97.2 0.0018 6.2E-08 72.4 12.8 205 297-504 406-618 (699)
312 1xi4_A Clathrin heavy chain; a 97.2 0.017 5.9E-07 67.7 20.6 238 318-567 47-309 (1630)
313 3a9g_A Putative uncharacterize 97.2 0.23 8E-06 50.2 27.4 228 296-535 28-330 (354)
314 2be1_A Serine/threonine-protei 97.2 0.014 4.8E-07 58.8 17.8 198 353-552 11-236 (339)
315 1zgk_A Kelch-like ECH-associat 97.2 0.039 1.3E-06 54.5 21.0 228 309-550 25-290 (308)
316 2xn4_A Kelch-like protein 2; s 97.2 0.041 1.4E-06 54.1 20.9 215 353-581 17-262 (302)
317 3a9g_A Putative uncharacterize 97.1 0.16 5.3E-06 51.5 24.9 233 340-578 28-330 (354)
318 3ott_A Two-component system se 97.0 0.18 6.2E-06 56.6 27.0 230 340-586 21-256 (758)
319 3sre_A PON1, serum paraoxonase 97.0 0.11 3.9E-06 52.5 22.4 208 341-555 50-308 (355)
320 2woz_A Kelch repeat and BTB do 97.0 0.15 5.1E-06 50.5 23.3 228 311-552 18-292 (318)
321 3ii7_A Kelch-like protein 7; p 96.9 0.089 3E-06 51.7 20.2 186 309-501 56-273 (306)
322 1zgk_A Kelch-like ECH-associat 96.7 0.068 2.3E-06 52.8 18.3 216 351-581 24-273 (308)
323 2g8s_A Glucose/sorbosone dehyd 96.7 0.3 1E-05 49.3 23.5 233 297-540 18-347 (353)
324 4asc_A Kelch repeat and BTB do 96.6 0.15 5.2E-06 50.3 19.8 211 355-580 8-253 (315)
325 2be1_A Serine/threonine-protei 96.5 0.04 1.4E-06 55.4 14.5 193 309-504 10-235 (339)
326 2xzh_A Clathrin heavy chain 1; 96.3 0.94 3.2E-05 44.9 28.9 195 304-505 74-295 (365)
327 3ott_A Two-component system se 96.2 2.1 7.1E-05 47.8 35.0 271 297-585 324-622 (758)
328 2uvk_A YJHT; unknown function, 96.2 0.15 5E-06 51.4 17.2 220 351-581 19-327 (357)
329 3pbp_A Nucleoporin NUP82; beta 96.1 0.35 1.2E-05 49.7 19.2 145 436-584 30-206 (452)
330 2g8s_A Glucose/sorbosone dehyd 96.1 1.4 4.7E-05 44.3 27.1 236 341-583 18-347 (353)
331 3sre_A PON1, serum paraoxonase 96.0 0.13 4.5E-06 52.0 15.6 156 428-587 51-249 (355)
332 2uvk_A YJHT; unknown function, 96.0 0.31 1E-05 48.9 18.6 234 309-554 20-349 (357)
333 1bpo_A Protein (clathrin); cla 96.0 1.8 6.1E-05 44.7 30.4 196 303-505 72-294 (494)
334 3pbp_A Nucleoporin NUP82; beta 95.9 0.24 8.1E-06 51.0 16.6 137 406-543 41-208 (452)
335 1cru_A Protein (soluble quinop 95.8 0.61 2.1E-05 48.9 20.1 110 425-535 25-162 (454)
336 3sbq_A Nitrous-oxide reductase 95.7 2.7 9.4E-05 44.6 25.6 245 311-560 72-431 (638)
337 3s25_A Hypothetical 7-bladed b 95.2 2.5 8.6E-05 41.5 24.4 199 318-548 36-256 (302)
338 3das_A Putative oxidoreductase 95.2 0.78 2.7E-05 46.1 17.7 154 420-576 25-218 (347)
339 1tl2_A L10, protein (tachylect 95.2 1.6 5.3E-05 40.8 18.1 176 398-583 6-203 (236)
340 2woz_A Kelch repeat and BTB do 95.2 1 3.6E-05 44.2 18.4 144 351-500 109-287 (318)
341 2zwa_A Leucine carboxyl methyl 94.4 1.8 6.1E-05 48.0 19.7 198 350-551 396-639 (695)
342 2zwa_A Leucine carboxyl methyl 94.1 1.9 6.6E-05 47.7 19.0 150 397-549 399-579 (695)
343 3sbq_A Nitrous-oxide reductase 94.0 7 0.00024 41.6 21.5 230 354-587 72-405 (638)
344 1tl2_A L10, protein (tachylect 93.8 2.9 0.0001 39.0 16.4 171 309-493 4-203 (236)
345 1cru_A Protein (soluble quinop 93.6 7.9 0.00027 40.3 29.2 107 340-446 26-163 (454)
346 3das_A Putative oxidoreductase 93.4 6.9 0.00024 39.1 28.2 239 335-578 26-326 (347)
347 1xi4_A Clathrin heavy chain; a 93.1 3.2 0.00011 49.1 18.7 195 304-505 73-294 (1630)
348 3b7f_A Glycosyl hydrolase, BNR 92.1 11 0.00038 38.0 25.7 263 296-567 54-391 (394)
349 3qhy_B Beta-lactamase inhibito 90.7 3.9 0.00013 39.6 14.0 218 341-586 24-242 (282)
350 3b7f_A Glycosyl hydrolase, BNR 88.5 22 0.00075 35.7 27.7 269 309-585 22-367 (394)
351 3qhy_B Beta-lactamase inhibito 87.4 15 0.0005 35.4 15.4 238 298-568 25-263 (282)
352 1zi0_A DNA gyrase subunit A; b 86.9 24 0.00083 34.4 26.6 236 309-547 3-277 (307)
353 3s25_A Hypothetical 7-bladed b 86.8 24 0.00082 34.3 21.4 161 319-501 88-256 (302)
354 2wg3_C Hedgehog-interacting pr 84.1 9.2 0.00031 39.9 12.8 111 426-536 13-158 (463)
355 3uc1_A DNA gyrase subunit A; D 83.4 36 0.0012 33.5 26.6 272 309-581 3-321 (327)
356 1suu_A DNA gyrase subunit A; t 80.0 46 0.0016 32.4 26.5 190 309-500 8-231 (312)
357 3no0_A DNA gyrase subunit A; D 79.1 46 0.0016 31.8 21.0 205 289-500 13-246 (276)
358 3q6k_A 43.2 kDa salivary prote 78.9 57 0.002 32.8 24.5 188 362-577 123-341 (381)
359 4gq2_M Nucleoporin NUP120; bet 77.5 1E+02 0.0036 35.1 22.4 36 471-506 237-272 (950)
360 1suu_A DNA gyrase subunit A; t 75.3 63 0.0022 31.4 24.1 193 350-546 6-230 (312)
361 1wp5_A Topoisomerase IV; broke 75.0 66 0.0023 31.5 24.9 235 309-547 5-277 (323)
362 3l6v_A GYRA, DNA gyrase subuni 74.7 73 0.0025 31.9 28.4 238 305-545 4-314 (370)
363 4hvt_A Ritya.17583.B, post-pro 74.4 1.1E+02 0.0037 33.7 25.5 240 299-546 131-429 (711)
364 4hvt_A Ritya.17583.B, post-pro 73.6 1.1E+02 0.0038 33.5 22.6 225 348-579 137-416 (711)
365 1sqj_A OXG-RCBH, oligoxylogluc 71.0 1.3E+02 0.0046 33.3 26.9 146 297-447 15-190 (789)
366 3no0_A DNA gyrase subunit A; D 69.5 79 0.0027 30.1 22.4 204 340-546 23-245 (276)
367 3l6v_A GYRA, DNA gyrase subuni 68.2 1E+02 0.0035 30.8 26.1 230 349-583 4-309 (370)
368 2wg3_C Hedgehog-interacting pr 63.3 1.4E+02 0.0048 30.8 27.1 54 297-351 14-79 (463)
369 4fhn_B Nucleoporin NUP120; pro 61.7 28 0.00096 40.8 10.5 39 342-380 239-277 (1139)
370 4fhn_B Nucleoporin NUP120; pro 60.2 2E+02 0.0067 33.5 17.3 37 519-555 240-276 (1139)
371 4gq2_M Nucleoporin NUP120; bet 59.4 2.4E+02 0.0081 32.1 24.4 38 518-555 237-274 (950)
372 1zi0_A DNA gyrase subunit A; b 58.2 1.4E+02 0.0046 28.9 25.7 228 351-583 2-270 (307)
373 3uc1_A DNA gyrase subunit A; D 57.6 1.4E+02 0.005 29.0 22.4 230 353-584 4-273 (327)
374 3kci_A Probable E3 ubiquitin-p 57.6 1.5E+02 0.0053 29.4 27.3 231 309-547 62-345 (389)
375 3q6k_A 43.2 kDa salivary prote 51.9 2E+02 0.0067 28.8 22.3 187 320-534 124-341 (381)
376 2cn3_A Xyloglucanase, beta-1,4 48.2 3.1E+02 0.01 30.0 29.2 60 298-359 24-91 (737)
377 3f7f_A Nucleoporin NUP120; nuc 48.0 2.7E+02 0.0091 30.5 14.4 37 428-466 223-259 (729)
378 3kci_A Probable E3 ubiquitin-p 46.3 2.3E+02 0.0079 28.0 31.5 264 310-586 11-341 (389)
379 1wp5_A Topoisomerase IV; broke 45.3 2.2E+02 0.0076 27.6 23.0 230 350-584 3-271 (323)
380 3zwu_A Alkaline phosphatase PH 44.5 54 0.0018 35.2 8.3 60 428-487 477-548 (592)
381 1sqj_A OXG-RCBH, oligoxylogluc 43.3 3.7E+02 0.013 29.6 26.4 147 340-490 14-190 (789)
382 3zwu_A Alkaline phosphatase PH 40.9 81 0.0028 33.8 9.0 55 521-576 480-547 (592)
383 4a9v_A PHOX; hydrolase, beta-p 40.1 94 0.0032 33.1 9.1 62 427-488 476-549 (592)
384 3f7f_A Nucleoporin NUP120; nuc 39.1 40 0.0014 37.0 6.3 37 342-380 223-259 (729)
385 1zvt_A Topoisomerase IV subuni 37.5 2.6E+02 0.0088 26.1 11.4 145 398-546 4-162 (256)
386 4a9v_A PHOX; hydrolase, beta-p 30.7 1.7E+02 0.0058 31.2 9.2 59 519-577 478-549 (592)
387 2cn3_A Xyloglucanase, beta-1,4 29.5 5.8E+02 0.02 27.7 24.3 231 342-580 24-322 (737)
388 1zvt_A Topoisomerase IV subuni 28.3 3.6E+02 0.012 25.0 12.9 142 440-586 4-159 (256)
389 3mvd_K Regulator of chromosome 28.0 4.6E+02 0.016 26.0 31.1 231 341-586 75-370 (423)
390 1sr4_A CDT A, cytolethal diste 23.7 1.9E+02 0.0064 26.2 6.9 96 318-422 68-166 (206)
No 1
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=6.6e-43 Score=360.90 Aligned_cols=293 Identities=22% Similarity=0.361 Sum_probs=260.0
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~ 363 (587)
++.+..+++.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ .++..+..+..|...|.+++|+|++++|++++.|+.
T Consensus 43 ~~~~~~~~l~gH~~~v~~~~~s~d-~~~l~s~s~Dg~v~iWd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~ 120 (340)
T 1got_B 43 IQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDS-YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120 (340)
T ss_dssp CCCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTTEEEEEET-TTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCE
T ss_pred ccchhheeecCCCCceEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCe
Confidence 345678899999999999999999 999999999999999999 688888999999999999999999999999999999
Q ss_pred EEEEECCCCc----EEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC
Q 007855 364 IKYWDTETGQ----VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 364 I~vWd~~t~~----~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
|++|++.++. ....+..+ ....++.+.+.+ .+++++.|+.|++||+.+++.+..+.+|.+.|.+++|+|++
T Consensus 121 v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~ 196 (340)
T 1got_B 121 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN----QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT 196 (340)
T ss_dssp EEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT----EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS
T ss_pred EEEEECccCCCcceeEEEecCCCccEEEEEECCCC----cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC
Confidence 9999998763 34444433 344566666543 49999999999999999999999999999999999999999
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
++|++++.|+.|++||++++.....+. .|...|.+++|+|++++|++++.|+.|++||++....+.. +........
T Consensus 197 ~~l~sg~~d~~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~---~~~~~~~~~ 272 (340)
T 1got_B 197 RLFVSGACDASAKLWDVREGMCRQTFT-GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMT---YSHDNIICG 272 (340)
T ss_dssp SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCCSC
T ss_pred CEEEEEeCCCcEEEEECCCCeeEEEEc-CCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEE---EccCCcccc
Confidence 999999999999999999998887764 5888999999999999999999999999999987655432 222222346
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.+++|+|+|++|++|+.||.|++||+.+++.+..+.+|.+.|.+++|+| ++.+|+||+.||+|+|||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcC-CCCEEEEEcCCccEEecC
Confidence 88999999999999999999999999999999999999999999999999 778999999999999998
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=3.4e-43 Score=372.81 Aligned_cols=287 Identities=26% Similarity=0.465 Sum_probs=263.6
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
..++.+|...|++++|+|+ +.+|++|+.||+|+|||+ .++++..++.+|...|.+++|+|++++|++|+.|++|+|||
T Consensus 101 ~~~l~gh~~~V~~~~~~p~-~~~l~s~s~Dg~i~vwd~-~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 101 KYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDY-ETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD 178 (410)
T ss_dssp SCEEECCSSCEEEEEECSS-SSEEEEEESSSCEEEEET-TTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred eEeecccCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 3568899999999999999 899999999999999999 78899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 369 TETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 369 ~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+.+++++..+..+ ..+.++.|.|++ .+|++|+.|+.|++||++++..+..+.+|...|.++.|++++.+|++++.|
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p~~---~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D 255 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMPNG---DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSND 255 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred CCCCceeEEEcCCCCCEEEEEEeCCC---CEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCC
Confidence 9999999888654 456678888754 589999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEEEEeCC--------------------CCEEEEEECCCeEEEEEcCCceeeccc
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN--------------------TNWLAAQSLDNQILIYSTRERFQLNKK 507 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~--------------------g~~l~~~s~dg~I~iwd~~~~~~~~~~ 507 (587)
+.|++||+.+......+. .|...|.+++|+|+ +.+|++|+.|+.|++||++++..+
T Consensus 256 ~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~--- 331 (410)
T 1vyh_C 256 QTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL--- 331 (410)
T ss_dssp SCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE---
T ss_pred CeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE---
Confidence 999999999988877664 58889999999996 679999999999999999887655
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..+.+| ...|.+++|+|+|++|++|+.||.|++||+.+++++..+.+|...|++++|+| ++.+|+||+.||+|+|||
T Consensus 332 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~-~~~~l~sgs~D~~i~vW~ 408 (410)
T 1vyh_C 332 MTLVGH--DNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHK-TAPYVVTGSVDQTVKVWE 408 (410)
T ss_dssp EEEECC--SSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECS-SSSCEEEEETTSEEEEEC
T ss_pred EEEECC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEe
Confidence 345566 56789999999999999999999999999999999999999999999999999 777999999999999997
No 3
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.8e-42 Score=353.69 Aligned_cols=290 Identities=19% Similarity=0.357 Sum_probs=259.1
Q ss_pred ceEEEEcCCCCCeEEEEEccC---CCcEEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEeCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYD 361 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~---~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D 361 (587)
.++..+.+|.+.|++|+|+|+ ++.+|+||+.|++|+||++ .... +...+.+|...|.+++|++++.++++++.|
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~-~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D 101 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW-RDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLD 101 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEE-ETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETT
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEEC-CCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCC
Confidence 345677899999999999985 3679999999999999999 4443 455789999999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 362 KNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
++|++||+.+++.+..+..+. ....++|+|++ .+|++|+.+|.|++||+.+++....+..|...|.+++|+|++++
T Consensus 102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg---~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~ 178 (321)
T 3ow8_A 102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS---QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKY 178 (321)
T ss_dssp SEEEEEETTTTEEEEEEECCTTCCCCEEECTTS---SEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSE
T ss_pred CcEEEEECCCCCEEEEEeCCCccEEEEEECCCC---CEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCE
Confidence 999999999999998887543 45678888865 58999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 441 FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
|++++.|+.|++||++++..+..+. .|...|.+++|+|++++|++++.|+.|++||++..... ..+.+| ...|.
T Consensus 179 lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~h--~~~v~ 252 (321)
T 3ow8_A 179 LASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA---GTLSGH--ASWVL 252 (321)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE---EEECCC--SSCEE
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee---EEEcCC--CCceE
Confidence 9999999999999999998887764 58889999999999999999999999999999876544 345566 56789
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++.+|++++.||.|+|||
T Consensus 253 ~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~-~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 253 NVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNG-NGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTCCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECC-CCCEEEEEeCCCeEEEEe
Confidence 999999999999999999999999999999999999999999999999 778999999999999997
No 4
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=2.6e-41 Score=351.18 Aligned_cols=292 Identities=18% Similarity=0.287 Sum_probs=256.5
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
.+..++|.||.+.|++|+|+|+ +.+|+||+.||+|+|||. .+++....+..|...|.+++|+|+|.+|++++.|+.|+
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d-~~~l~s~s~Dg~v~vWd~-~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~ 131 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKD-KRRIVSSSQDGKVIVWDS-FTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCS 131 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEE
T ss_pred cEEEEEecCCCCeEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEE
Confidence 4677899999999999999999 899999999999999999 67888888889999999999999999999999999999
Q ss_pred EEECCCCc------EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec--
Q 007855 366 YWDTETGQ------VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-- 436 (587)
Q Consensus 366 vWd~~t~~------~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-- 436 (587)
+|++.... ....+. +...+.++.|.+++ ..|++++.|+.|++||+.+++.+..+.+|...|.++.|+|
T Consensus 132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~ 208 (354)
T 2pbi_B 132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD---MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE 208 (354)
T ss_dssp EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS---SEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS
T ss_pred EEEEeccccccccccceeeeccCCcEEEEEEeCCC---CEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC
Confidence 99986531 222332 33445567777654 5799999999999999999999999999999999999987
Q ss_pred CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccc
Q 007855 437 NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
++++|++++.||.|++||++++.++..+. .|...|.+++|+|++.+|++++.|+.|++||++....+.. +..+...
T Consensus 209 ~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~---~~~~~~~ 284 (354)
T 2pbi_B 209 TGNTFVSGGCDKKAMVWDMRSGQCVQAFE-THESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAI---YSKESII 284 (354)
T ss_dssp SCCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE---ECCTTCC
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE---EcCCCcc
Confidence 46899999999999999999998887764 5889999999999999999999999999999987654422 2222223
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..+.+++|+|+|.+|++|+.||.|++||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.||+|+||+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~sp-dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSP-DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT-TSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECC-CCCEEEEEcCCCCEEecC
Confidence 4577899999999999999999999999999999999999999999999999 778999999999999997
No 5
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.4e-41 Score=343.62 Aligned_cols=289 Identities=19% Similarity=0.325 Sum_probs=256.0
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
.++.++|.+|.+.|++|+|+|+ +.+|++|+.||+|+|||+ .++..+..+..|..+|.+++|++++++|++|+.|++|+
T Consensus 3 l~~~~~~~~h~~~V~~~~fsp~-~~~l~s~~~dg~v~lWd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVELWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (304)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred ceeEEeecCCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEE
Confidence 3567899999999999999999 999999999999999999 78899999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEec-CCCEEE
Q 007855 366 YWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-NNRRFV 442 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp-~~~~l~ 442 (587)
+||+.+++.+..+..+ ..+.+++++|++ .+|++|+.|+.|++||++++ .....+.+|...|.+++|+| ++..|+
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~ 157 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCC---CEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEE
Confidence 9999999999988755 446678888754 58999999999999999987 55677899999999999999 678999
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC--CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp--~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
+++.|++|++||++.......+...+...+..+.++| ++.+|++++.|+.|++||++++..+ ..+.+| ...+.
T Consensus 158 sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~---~~~~~h--~~~v~ 232 (304)
T 2ynn_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGH--MSNVS 232 (304)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE---EEEECC--SSCEE
T ss_pred EEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc---eeeCCC--CCCEE
Confidence 9999999999999887766666666778899999987 6789999999999999999887654 445666 46788
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCC-EEEEEECCCcEE
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIK 584 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g~DG~I~ 584 (587)
+++|+|++.+|++|+.||.|++||+.+++++..+..|...+.+++|+|.+.. +|++|+.||.+.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~ 297 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV 297 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence 9999999999999999999999999999999999999999999999996554 477777766543
No 6
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.6e-40 Score=337.85 Aligned_cols=294 Identities=26% Similarity=0.534 Sum_probs=261.5
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
...+..++.+|.+.|++++|+|+ +.+|++|+.||.|+||++ ..++....+.+|...|.+++|+|++++|++++.|+.|
T Consensus 12 ~~~~~~~~~gh~~~v~~~~~s~~-~~~l~s~~~dg~i~iw~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i 89 (312)
T 4ery_A 12 NYALKFTLAGHTKAVSSVKFSPN-GEWLASSSADKLIKIWGA-YDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTL 89 (312)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred CceeEEEEcccCCcEEEEEECCC-CCEEEEeeCCCeEEEEeC-CCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEE
Confidence 34677899999999999999999 899999999999999999 6788899999999999999999999999999999999
Q ss_pred EEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEE
Q 007855 365 KYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s 443 (587)
++||+.+++++..+..+. .+.++.+.+++ .+|++|+.|+.|++||+++++.+..+..|...|.+++|+|++++|++
T Consensus 90 ~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 166 (312)
T 4ery_A 90 KIWDVSSGKCLKTLKGHSNYVFCCNFNPQS---NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 166 (312)
T ss_dssp EEEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred EEEECCCCcEEEEEcCCCCCEEEEEEcCCC---CEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEE
Confidence 999999999998887543 45677777754 58999999999999999999999999999999999999999999999
Q ss_pred EECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEE
Q 007855 444 SSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 523 (587)
++.|+.|++||++++..+..+...+...+..++|+|++++|++++.|+.|++||+.++..+. .+.+|..........
T Consensus 167 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~ 243 (312)
T 4ery_A 167 SSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK---TYTGHKNEKYCIFAN 243 (312)
T ss_dssp EETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EECSSCCSSSCCCEE
T ss_pred EeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEEecCCceEEEEEE
Confidence 99999999999999988888776777889999999999999999999999999998876543 344443333333334
Q ss_pred E-cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE--CCCcEEEcC
Q 007855 524 F-SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG--WDGLIKYWD 587 (587)
Q Consensus 524 ~-spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g--~DG~I~iWD 587 (587)
+ .+++.+|++|+.||.|++||+.+++++..+.+|...|.+++|+| ++.+|++++ .||+|++|+
T Consensus 244 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 244 FSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHP-TENIIASAALENDKTIKLWK 309 (312)
T ss_dssp EECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECS-SSSEEEEEECTTTCCEEEEE
T ss_pred EEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecC-cCCceEEEEccCCccEEEec
Confidence 4 46789999999999999999999999999999999999999999 778999987 699999995
No 7
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.1e-42 Score=360.66 Aligned_cols=297 Identities=22% Similarity=0.394 Sum_probs=251.4
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
...+.++|.||.+.|++++|+|+ +.+|+||+.||+|+|||+ .+++.+..+..|...|.+++|+|+|++|++|+.|+.|
T Consensus 55 ~~~~~~~l~gH~~~V~~~~~sp~-~~~l~s~s~D~~v~iWd~-~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v 132 (380)
T 3iz6_a 55 DLVCCRTLQGHSGKVYSLDWTPE-KNWIVSASQDGRLIVWNA-LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSAC 132 (380)
T ss_dssp CCEEEEEECCCSSCEEEEEECTT-SSCEEEEETTSEEEEEET-TTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCC
T ss_pred eeEEeecccccccEEEEEEEcCC-CCEEEEEeCCCeEEEEEC-CCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcE
Confidence 35678899999999999999999 899999999999999999 7889999999999999999999999999999999999
Q ss_pred EEEECCCCc-------EEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-----ccCCCCeeE
Q 007855 365 KYWDTETGQ-------VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVNT 431 (587)
Q Consensus 365 ~vWd~~t~~-------~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-----~~h~~~I~~ 431 (587)
+||++.+.. ....+..+ ..+..+.+.+. ....|++|+.|+.|++||+.+++.+..+ .+|...|.+
T Consensus 133 ~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~ 210 (380)
T 3iz6_a 133 SIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPD--QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210 (380)
T ss_dssp EEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS--SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEE
T ss_pred EEEECCCCccccCCccceeeccCCCcceEEEEEecC--CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEE
Confidence 999997532 11222222 22334555553 3357999999999999999999988887 679999999
Q ss_pred EEEec-CCCEEEEEECCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce
Q 007855 432 ITFVD-NNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 432 i~~sp-~~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 509 (587)
+.|++ ++.+|++|+.|++|++||++.. ..+..+ ..|...|.+++|+|++.+|++++.|+.|++||++++..+.....
T Consensus 211 ~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~ 289 (380)
T 3iz6_a 211 LSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY-HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR 289 (380)
T ss_dssp EEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEE-CCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred EEeecCCCCEEEEEECCCeEEEEECCCCCcceEEE-CCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence 99987 7899999999999999999854 444444 46899999999999999999999999999999998766543322
Q ss_pred ecc--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE----ecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 510 FAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL----KCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 510 ~~~--~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l----~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
... ......+.+++|+|+|++|++|+.||.|++||+.+++.+..+ .+|.+.|++++|+| ++.+|+||+.||+|
T Consensus 290 ~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~D~~i 368 (380)
T 3iz6_a 290 EPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSS-DGSALCTGSWDKNL 368 (380)
T ss_dssp CCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECS-SSSEEEEECTTSCE
T ss_pred cccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECC-CCCEEEEeeCCCCE
Confidence 111 111234788999999999999999999999999999988887 67999999999999 78899999999999
Q ss_pred EEcC
Q 007855 584 KYWD 587 (587)
Q Consensus 584 ~iWD 587 (587)
+|||
T Consensus 369 ~iW~ 372 (380)
T 3iz6_a 369 KIWA 372 (380)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 9996
No 8
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.3e-39 Score=333.18 Aligned_cols=288 Identities=20% Similarity=0.379 Sum_probs=249.7
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC----CeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
.+..+|.||.+.|++|+|+|+++++|+||+.|++|++|++... +.++..+.+|...|.+++|+|++++|++|+.|+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~ 87 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK 87 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC
Confidence 4667899999999999999986789999999999999998321 345778999999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC----
Q 007855 363 NIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN---- 437 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~---- 437 (587)
+|+|||+.+++++..+..+. .+.++.+.+++ .+|++|+.|+.|++||++ +..+..+.+|...|.++.|+|.
T Consensus 88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~ 163 (319)
T 3frx_A 88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKA---SMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKAD 163 (319)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---CEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC----
T ss_pred EEEEEECCCCCeeEEEccCCCcEEEEEEcCCC---CEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCC
Confidence 99999999999998887543 45677777754 589999999999999996 5567788899999999999985
Q ss_pred --CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccc
Q 007855 438 --NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 438 --~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
+..|++++.|+.|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.++..+... ..
T Consensus 164 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~---~~--- 236 (319)
T 3frx_A 164 DDSVTIISAGNDKMVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTL---SA--- 236 (319)
T ss_dssp --CCEEEEEETTSCEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE---EC---
T ss_pred CCccEEEEEeCCCEEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cC---
Confidence 4489999999999999999988776664 58899999999999999999999999999999887655332 22
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--------CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--------HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~--------h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...+.+++|+|++.+|++++.+ .+++|++.....+..+.. |...+.+++|+| ++.+|++|+.||.|+|||
T Consensus 237 ~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~sg~~Dg~i~vWd 314 (319)
T 3frx_A 237 QDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSA-DGQTLFAGYTDNVIRVWQ 314 (319)
T ss_dssp CSCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECC-CCCEEEEeecCceEEEEE
Confidence 2468899999999999988865 599999998887777653 456799999999 788999999999999997
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=8.9e-40 Score=364.48 Aligned_cols=340 Identities=16% Similarity=0.295 Sum_probs=271.7
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcc----------cCCCcc-----------------------cCC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAK----------AANDHC-----------------------YIP 285 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~----------~~~~~~-----------------------~~p 285 (587)
++...+....+.+...+.++...|..+|.|-....... .+.... +-.
T Consensus 57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~ 136 (611)
T 1nr0_A 57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT 136 (611)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence 44444555567777888899999999999976422110 000000 011
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
.+.+.++.+|...|++++|+|++..+|++|+.|++|+|||. ..++++.++.+|...|.+++|+|+|++|++++.|++|+
T Consensus 137 ~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~ 215 (611)
T 1nr0_A 137 GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIV 215 (611)
T ss_dssp CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEET-TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEE
Confidence 23345678999999999999994457999999999999998 78889999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEee--------cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE-----------------
Q 007855 366 YWDTETGQVIRTFS--------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ----------------- 420 (587)
Q Consensus 366 vWd~~t~~~i~~~~--------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~----------------- 420 (587)
|||+.+++++..+. +...+..++|+|++ .+|++++.|+.|++||+.+++.+.
T Consensus 216 lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (611)
T 1nr0_A 216 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG---TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW 292 (611)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE
T ss_pred EEECCCCcEeeeeccccccccccCCCEEEEEECCCC---CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE
Confidence 99999999998884 33456677887754 589999999999999998876543
Q ss_pred --------------------------EEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec--------
Q 007855 421 --------------------------EYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------- 466 (587)
Q Consensus 421 --------------------------~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-------- 466 (587)
.+.+|...|++++|+|++++|++++.|++|++||+.++.....+..
T Consensus 293 ~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~ 372 (611)
T 1nr0_A 293 TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITG 372 (611)
T ss_dssp CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEE
T ss_pred cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEE
Confidence 3457899999999999999999999999999999876544322100
Q ss_pred -------------------------------------------------------------------------CCCccee
Q 007855 467 -------------------------------------------------------------------------PHMHSMP 473 (587)
Q Consensus 467 -------------------------------------------------------------------------~~~~~i~ 473 (587)
.+...+.
T Consensus 373 ~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~ 452 (611)
T 1nr0_A 373 IKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSS 452 (611)
T ss_dssp EEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEE
T ss_pred EEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCce
Confidence 0123467
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEE
Q 007855 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFR 552 (587)
Q Consensus 474 ~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t-~~~~~ 552 (587)
+++|+|+|++|++++.|+.|++|++.+.... .... .+| ...|.+++|||+|++|++++.|+.|++|++.+ ++++.
T Consensus 453 ~va~spdg~~lasgs~D~~v~lwd~~~~~~~-~~~~-~~h--~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~ 528 (611)
T 1nr0_A 453 CVALSNDKQFVAVGGQDSKVHVYKLSGASVS-EVKT-IVH--PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH 528 (611)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEEEETTEEE-EEEE-EEC--SSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred EEEEeCCCCEEEEeCCCCeEEEEEccCCcee-eeec-cCC--CCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence 8999999999999999999999999765321 1122 344 56799999999999999999999999999987 66655
Q ss_pred E--EecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 553 T--LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 553 ~--l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
. +.+|...|.+++|+| ++.+|+|++.|++|+|||
T Consensus 529 ~~~~~~H~~~V~~v~fsp-dg~~lasgs~D~~v~lW~ 564 (611)
T 1nr0_A 529 TNSWTFHTAKVACVSWSP-DNVRLATGSLDNSVIVWN 564 (611)
T ss_dssp CCCCCCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred eeeeeecccceeEEEECC-CCCEEEEEECCCcEEEEE
Confidence 4 345999999999999 788999999999999996
No 10
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=335.61 Aligned_cols=295 Identities=18% Similarity=0.303 Sum_probs=242.3
Q ss_pred ceEEEEcCCCC-CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee--E-EEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 287 RLVHTWSGHTK-GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM--R-TYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 287 ~~i~tl~gH~~-~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~--~-~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
.++.++.+|.. .|.+|+|+|+ +.+|++|+.|++|+||++ ..+... . ...+|...|.+++|+|++++|++|+.|+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~-g~~las~~~D~~i~iw~~-~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~ 83 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPA-GTLLASCGGDRRIRIWGT-EGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTT-SSCEEEEETTSCEEEEEE-ETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEeeeecCCCCCcEEEEEECCC-CCEEEEEcCCCeEEEEEc-CCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC
Confidence 57889999998 9999999999 999999999999999999 455432 2 2368999999999999999999999999
Q ss_pred eEEEEECCCCc--EEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC---cEEEEEccCCCCeeEEEEec
Q 007855 363 NIKYWDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVD 436 (587)
Q Consensus 363 ~I~vWd~~t~~--~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp 436 (587)
+|+||++.++. ++..+..+ ..+.+++|+|++ ++|++|+.|+.|++||+.++ ..+..+..|...|.+++|+|
T Consensus 84 ~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p 160 (345)
T 3fm0_A 84 TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG---NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP 160 (345)
T ss_dssp CEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS
T ss_pred cEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC---CEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC
Confidence 99999998774 45556543 456678888754 68999999999999999876 34667889999999999999
Q ss_pred CCCEEEEEECCCCEEEEECCCCeEE-EEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee-----------
Q 007855 437 NNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL----------- 504 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~----------- 504 (587)
++.+|++++.|+.|++||+...... ......|...|.+++|+|++++|++++.|+.|++|+.......
T Consensus 161 ~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~ 240 (345)
T 3fm0_A 161 SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPS 240 (345)
T ss_dssp SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CE
T ss_pred CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCc
Confidence 9999999999999999999877533 2233468899999999999999999999999999996432111
Q ss_pred -cccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe---------eEEEEecCCCCEEEEEEcCCCCCEE
Q 007855 505 -NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKV 574 (587)
Q Consensus 505 -~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l 574 (587)
.....+.+. ....|.+++|+|++.+|++++.|+.|++|+..... ......+|...|++++|+|++..+|
T Consensus 241 ~~~~~~~~~~-h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~l 319 (345)
T 3fm0_A 241 WKCICTLSGF-HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLL 319 (345)
T ss_dssp EEEEEEECSS-CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEE
T ss_pred cceeEEecCC-CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEE
Confidence 011122221 24678899999999999999999999999986542 1223357999999999999656799
Q ss_pred EEEECCCcEEEcC
Q 007855 575 ATCGWDGLIKYWD 587 (587)
Q Consensus 575 ~s~g~DG~I~iWD 587 (587)
+|||.||+|+||+
T Consensus 320 aS~s~Dg~v~~W~ 332 (345)
T 3fm0_A 320 ASCSDDGEVAFWK 332 (345)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEcCCCCcEEEEE
Confidence 9999999999996
No 11
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.6e-39 Score=362.54 Aligned_cols=326 Identities=21% Similarity=0.335 Sum_probs=260.9
Q ss_pred CCCCCCCccccccce-EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC
Q 007855 240 NAGGEKGEHVEDKST-FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 318 (587)
Q Consensus 240 ~~~~~~~~~~~~~~~-~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D 318 (587)
+..........+... ..++...|..+|.|.. .+.++++++.+|...|++++|+|+ +.+|++|+.|
T Consensus 146 h~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~-------------~~~~~~~~l~~H~~~V~~v~fspd-g~~las~s~D 211 (611)
T 1nr0_A 146 QARAMNSVDFKPSRPFRIISGSDDNTVAIFEG-------------PPFKFKSTFGEHTKFVHSVRYNPD-GSLFASTGGD 211 (611)
T ss_dssp CSSCEEEEEECSSSSCEEEEEETTSCEEEEET-------------TTBEEEEEECCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred CCCCceEEEECCCCCeEEEEEeCCCeEEEEEC-------------CCCeEeeeeccccCceEEEEECCC-CCEEEEEECC
Confidence 333333344444443 4678888999998853 234678899999999999999999 9999999999
Q ss_pred CeEEEEecCCCCeeeEEEc-------ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec-----------
Q 007855 319 TKVKIWDVFNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST----------- 380 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~-------~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~----------- 380 (587)
++|+|||+ .+++++..+. +|...|.+++|+|++++|++++.|++|+|||+.+++++..+..
T Consensus 212 ~~i~lwd~-~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~ 290 (611)
T 1nr0_A 212 GTIVLYNG-VDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 290 (611)
T ss_dssp SCEEEEET-TTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred CcEEEEEC-CCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEE
Confidence 99999999 6788888874 7999999999999999999999999999999999887765532
Q ss_pred ---------------------------------CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-c---
Q 007855 381 ---------------------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D--- 423 (587)
Q Consensus 381 ---------------------------------~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-~--- 423 (587)
...+.+++++|++ .+|++++.|+.|++||+.++.....+ .
T Consensus 291 ~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg---~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~ 367 (611)
T 1nr0_A 291 IWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADG---KTLFSADAEGHINSWDISTGISNRVFPDVHA 367 (611)
T ss_dssp EECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTCCEEECSSCSCS
T ss_pred EEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCC---CEEEEEeCCCcEEEEECCCCceeeecccCCc
Confidence 1223456666643 68999999999999999876443221 0
Q ss_pred ------------------------------------------------------------------------------cC
Q 007855 424 ------------------------------------------------------------------------------QH 425 (587)
Q Consensus 424 ------------------------------------------------------------------------------~h 425 (587)
.|
T Consensus 368 ~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~ 447 (611)
T 1nr0_A 368 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 447 (611)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEEC
T ss_pred ceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeec
Confidence 12
Q ss_pred CCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
...+.+++|+|++++|++++.|++|++||+............|...|.+++|+|++++|++++.|+.|++|++.+...+.
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~ 527 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA 527 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCcee
Confidence 34578899999999999999999999999987654222224688899999999999999999999999999998632222
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe-eE-EEEecC-CCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK-VF-RTLKCH-EGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~-~~-~~l~~h-~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
....+.+| ...|.+++|+|+|++|++|+.|+.|+|||+.++. .+ ..+.+| ...|.+++|+| ++. |++++.||+
T Consensus 528 ~~~~~~~H--~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~-d~~-l~s~~~D~~ 603 (611)
T 1nr0_A 528 HTNSWTFH--TAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN-ETT-IVSAGQDSN 603 (611)
T ss_dssp CCCCCCCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE-TTE-EEEEETTSC
T ss_pred eeeeeeec--ccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC-CCE-EEEecCCCC
Confidence 11123335 5779999999999999999999999999998865 33 567789 89999999999 555 999999999
Q ss_pred EEEcC
Q 007855 583 IKYWD 587 (587)
Q Consensus 583 I~iWD 587 (587)
|++||
T Consensus 604 i~lW~ 608 (611)
T 1nr0_A 604 IKFWN 608 (611)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99996
No 12
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.7e-39 Score=336.40 Aligned_cols=282 Identities=18% Similarity=0.300 Sum_probs=232.3
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC----------CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF----------NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~----------~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~ 363 (587)
.|...|.+++|+|+ |.+|++++ |+++++||.. ...........|...|.+++|++++ .|++|+.||+
T Consensus 28 ~~~~~v~~~~fs~d-G~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CMERQLEAARYRSD-GALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCCSEEEEEEECTT-SCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred cccCCEEEEEECCC-CCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 46778999999999 89999888 7788888731 0111122233467789999999985 7889999999
Q ss_pred EEEEECCCCcEEEEee-----cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC
Q 007855 364 IKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN 438 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~ 438 (587)
|+|||+.+++.+..+. +...+.+++|++++ .+|++|+.|+.|++||+.+++.+..+.+|...|++++|++++
T Consensus 105 v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg---~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~ 181 (344)
T 4gqb_B 105 VELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG---TQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK 181 (344)
T ss_dssp EEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSC
T ss_pred EEEEeccCCCceeEeeccccCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCC
Confidence 9999999987554332 33456678888754 589999999999999999999999999999999999999987
Q ss_pred C-EEEEEECCCCEEEEECCCCeEEEEeec-CCCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCceeecccceeccccc
Q 007855 439 R-RFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 439 ~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
. +|++++.|++|++||+++++....+.. .+...+.+++|+|+ +.+|++|+.|+.|++||++++..+ ..+.+|
T Consensus 182 ~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~---~~~~~h-- 256 (344)
T 4gqb_B 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV---LSSAVH-- 256 (344)
T ss_dssp TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CC---EEEECC--
T ss_pred CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEE---EEEcCC--
Confidence 4 789999999999999999888777643 34567899999995 578999999999999999887554 455666
Q ss_pred ccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 516 AGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 516 ~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...|.+++|+|++ ++|++|+.||.|+|||+.+++++ .+.+|.+.|++++|+|++..+|+|||.||+|++|+
T Consensus 257 ~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~-~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~ 328 (344)
T 4gqb_B 257 SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF-RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV 328 (344)
T ss_dssp SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE-EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE-EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence 5678999999998 58999999999999999998865 57899999999999997777889999999999995
No 13
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=9.7e-40 Score=339.85 Aligned_cols=283 Identities=19% Similarity=0.329 Sum_probs=232.0
Q ss_pred cCCCCCeEEEEEccCCCcEEEEEeC------CCeEEEEecCCCCe----eeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 293 SGHTKGVSAIRFFPKYGHLILSAGM------DTKVKIWDVFNSGK----CMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 293 ~gH~~~V~~l~~sp~~g~~L~sgs~------Dg~I~iWd~~~~~~----~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
.+|...|++|+|+|+ |.+|++|+. |+.|++|+. ..+. ......+|...|.+++|+|++. +++++.||
T Consensus 39 ~~H~~~V~~v~fSpD-G~~las~s~d~~~~wd~~v~~~~~-~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg 115 (357)
T 4g56_B 39 ACMEVQIGAVRYRRD-GALLLAASSLSSRTWGGSIWVFKD-PEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSG 115 (357)
T ss_dssp -CCCSEEEEEEECSS-SCEEEEEECSSSSSCCEEEEEESS-CC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTS
T ss_pred ccccCCEEEEEECCC-CCEEEEEcCCCCccccCeEEEEEC-CCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCC
Confidence 479999999999999 999999997 788999988 3432 2334557899999999999875 66788899
Q ss_pred eEEEEECCCCcEEEEe-----ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 363 NIKYWDTETGQVIRTF-----STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~-----~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
+|+|||+.+++.+... .+...+.+++|+|++ .+|++|+.|+.|++||+++++.+..+..|...|++++|+++
T Consensus 116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg---~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG---TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp CEEEC--------CCCCEEECCCSSCEEEEEECSSS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 9999999988765332 233456678888754 58999999999999999999999999999999999999998
Q ss_pred CC-EEEEEECCCCEEEEECCCCeEEEEee-cCCCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCceeecccceecccc
Q 007855 438 NR-RFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHI 514 (587)
Q Consensus 438 ~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~ 514 (587)
+. +|++++.|+.|++||++++.....+. ..+...+.+++|+|+ +.+|++++.|+.|++||++++..+ ..+.+|
T Consensus 193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~---~~~~~~- 268 (357)
T 4g56_B 193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA---QTSAVH- 268 (357)
T ss_dssp CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC---EEECCC-
T ss_pred CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEe---EEEecc-
Confidence 75 78999999999999999887665543 245667999999997 578999999999999999876544 345555
Q ss_pred cccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 515 VAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 515 ~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...|.+++|+|++ ++|++|+.||.|+|||+++++++..+ +|.+.|++++|+|.++.+|+|||.||+|++||
T Consensus 269 -~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~-~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~ 340 (357)
T 4g56_B 269 -SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL-SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH 340 (357)
T ss_dssp -SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC-CCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred -ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC-CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence 5678899999987 58999999999999999999887665 79999999999997788999999999999996
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=6.9e-38 Score=320.53 Aligned_cols=289 Identities=24% Similarity=0.400 Sum_probs=244.6
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC----CeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
++..+|+||++.|++|+|+|+++++|+|||.|++|+|||+... ..+...+.+|...|.+++|+|++++|++++.|+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~ 108 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc
Confidence 4567899999999999999987899999999999999998432 246778899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeecCCcce-EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEccCCCCeeEEEEecCC--
Q 007855 363 NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDNN-- 438 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~~h~~~I~~i~~sp~~-- 438 (587)
.|++|+................. ...+.+. ..+|++|+.|+.+++||+..... ...+..|...+.+++|++++
T Consensus 109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 185 (340)
T 4aow_A 109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD---NRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSN 185 (340)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTT---SSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSS
T ss_pred cceEEeecccceeeeecCCCCceeEEEEeec---CccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCC
Confidence 99999999998877776554443 4444443 35799999999999999987654 34456789999999998764
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
..+++++.|+.|++||++....+..+. .|...|.+++|+|++++|++++.|+.|++||+++...+.. +.. ...
T Consensus 186 ~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~---~~~---~~~ 258 (340)
T 4aow_A 186 PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYT---LDG---GDI 258 (340)
T ss_dssp CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEE---EEC---SSC
T ss_pred cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeee---ecC---Cce
Confidence 578899999999999999998887764 5889999999999999999999999999999988765533 222 256
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe---------cCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK---------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~---------~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+..++|+|++.++ +++.|+.|++||++++..+..+. +|...|++++|+| ++.+|+||+.||.|+|||
T Consensus 259 v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~ 334 (340)
T 4aow_A 259 INALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQ 334 (340)
T ss_dssp EEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred EEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEe
Confidence 8889999988665 45568999999999988776654 5888999999999 778999999999999997
No 15
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.5e-38 Score=333.36 Aligned_cols=289 Identities=20% Similarity=0.375 Sum_probs=245.4
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC------------------ceeeEEEec
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK------------------AVRDISFCN 350 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~------------------~V~~l~fs~ 350 (587)
.+.+ +|...|+|++|+|+ +.+|++|+ ++.++||++ .++..+..+..|.. .|++++|+|
T Consensus 58 ~~~~-~h~~~V~~v~fspd-g~~la~g~-~~~v~i~~~-~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 58 HKSL-DHTSVVCCVKFSND-GEYLATGC-NKTTQVYRV-SDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEE-ECSSCCCEEEECTT-SSEEEEEC-BSCEEEEET-TTCCEEEEECC-----------------CCCCBEEEEEECT
T ss_pred EEec-CCCCEEEEEEECCC-CCEEEEEc-CCcEEEEEe-cCCCEEEEecCccccccccccccccccCCCceeEEEEEECC
Confidence 3444 69999999999999 89999987 789999999 77888877766542 499999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV 429 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I 429 (587)
+|++|++|+.|+.|+|||+.+++.+..+..+. .+.++.|.+++ .+|++|+.|+.|++||+++++....+. +...+
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v 209 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG---DKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGV 209 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTTEEEEEEE-CSSCE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC---CEEEEecCCCcEEEEECCCCeeEEEEE-cCCCc
Confidence 99999999999999999999999988887543 45678888754 579999999999999999998887775 56789
Q ss_pred eEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEEee------cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 430 NTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKYIS------EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 430 ~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~------~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.+++|+| ++++|++++.|+.|++||++++..+..+. ..|...|.+++|+|++.+|++++.|+.|++||+....
T Consensus 210 ~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~ 289 (393)
T 1erj_A 210 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNAN 289 (393)
T ss_dssp EEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC----
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCC
Confidence 9999999 89999999999999999999988776653 3578899999999999999999999999999987643
Q ss_pred eec---------ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC----
Q 007855 503 QLN---------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL---- 569 (587)
Q Consensus 503 ~~~---------~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~---- 569 (587)
... ....+.+| ...|.+++|+|++.+|++|+.||.|++||+.+++++..+.+|...|.+++|++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~ 367 (393)
T 1erj_A 290 NKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLG 367 (393)
T ss_dssp -----------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTC
T ss_pred CcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcC
Confidence 211 12234455 467889999999999999999999999999999999999999999999999873
Q ss_pred -CCCEEEEEECCCcEEEcC
Q 007855 570 -EQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 570 -~~~~l~s~g~DG~I~iWD 587 (587)
++.+|+||+.||+|+|||
T Consensus 368 p~~~~l~sgs~Dg~i~iW~ 386 (393)
T 1erj_A 368 PEYNVFATGSGDCKARIWK 386 (393)
T ss_dssp TTCEEEEEEETTSEEEEEE
T ss_pred CCCCEEEEECCCCcEEECc
Confidence 467899999999999996
No 16
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.4e-38 Score=325.03 Aligned_cols=289 Identities=20% Similarity=0.358 Sum_probs=238.5
Q ss_pred CceEEEEcCCCCCeEEEEE-----ccCCCcEEEEEeCCCeEEEEecCCC------CeeeEEEcccCCceeeEEEecCCCe
Q 007855 286 KRLVHTWSGHTKGVSAIRF-----FPKYGHLILSAGMDTKVKIWDVFNS------GKCMRTYMGHSKAVRDISFCNDGTK 354 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~-----sp~~g~~L~sgs~Dg~I~iWd~~~~------~~~~~~~~~h~~~V~~l~fs~dg~~ 354 (587)
.++..+|.||.+.|++|+| ++.++.+|+||+.|++|+|||+... +.+...+.+|...|.+++|+|++.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCE
Confidence 3567889999999999999 7734899999999999999999432 3567788999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc---cCCCCee
Q 007855 355 FLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---QHLGAVN 430 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~---~h~~~I~ 430 (587)
|++++.|++|+|||+.+++.+..+..+ ..+.+++|+|++ .+|++|+.|+.|++||+.... ..... .|...|.
T Consensus 91 l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~---~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~ 166 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN---RQILSAGAEREIKLWNILGEC-KFSSAEKENHSDWVS 166 (343)
T ss_dssp EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST---TEEEEEETTSCEEEEESSSCE-EEECCTTTSCSSCEE
T ss_pred EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC---CEEEEEcCCCEEEEEeccCCc-eeeeecccCCCceee
Confidence 999999999999999999999888754 456678888754 589999999999999998443 33333 6889999
Q ss_pred EEEEecCC----------CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 431 TITFVDNN----------RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 431 ~i~~sp~~----------~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
+++|+|++ .+|++++.|+.|++||.. ......+ ..|...|.+++|+|++++|++++.|+.|++||+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 167 CVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTF-KAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred eeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEE-cCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 99999987 789999999999999954 4444444 36888999999999999999999999999999854
Q ss_pred ceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE--EEe-----------cCCCCEEEEEEc
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK-----------CHEGVCIGCEWH 567 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~--~l~-----------~h~~~V~~v~~s 567 (587)
..... ..+. + ...+.+++|+|++.+|++| .|+.|++|++.+++... .+. +|...|.+++|+
T Consensus 245 ~~~~~--~~~~-~--~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 318 (343)
T 2xzm_R 245 LTYPQ--REFD-A--GSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN 318 (343)
T ss_dssp CSSCS--EEEE-C--SSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred Ccccc--eeec-C--CCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence 32221 1121 1 3458899999999988766 57789999998876543 443 688899999999
Q ss_pred CCCCCEEEEEECCCcEEEcC
Q 007855 568 PLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 568 p~~~~~l~s~g~DG~I~iWD 587 (587)
| ++.+|++|+.||.|++||
T Consensus 319 p-~g~~l~sg~~Dg~v~~w~ 337 (343)
T 2xzm_R 319 A-LGKKLFAGFTDGVIRTFS 337 (343)
T ss_dssp S-SSCCEEEEETTSEEEEEE
T ss_pred C-CCCeEEEecCCceEEEEE
Confidence 9 778999999999999996
No 17
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.5e-38 Score=322.61 Aligned_cols=288 Identities=18% Similarity=0.302 Sum_probs=257.5
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
.....+.+|...|++|+|+|+ +.+|++|+.||.|+|||+ .+++.+..+.+|...|.+++|+|++++|++++.||.|++
T Consensus 23 ~~~~~l~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~i 100 (369)
T 3zwl_B 23 MKAIKLTGHERPLTQVKYNKE-GDLLFSCSKDSSASVWYS-LNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKL 100 (369)
T ss_dssp EEEEEEECCSSCEEEEEECTT-SCEEEEEESSSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccEEEEEeeceEEEEEEcCC-CCEEEEEeCCCEEEEEeC-CCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence 345678999999999999998 999999999999999999 788999999999999999999999999999999999999
Q ss_pred EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCc-----------EEEEEccCCC--C
Q 007855 367 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE-----------ITQEYDQHLG--A 428 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~~-----------~~~~~~~h~~--~ 428 (587)
||+.+++.+..+.....+..+.|.+++ .++++++.+ +.|.+||+.... .+..+..|.. .
T Consensus 101 wd~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWKSPVPVKRVEFSPCG---NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEECSSCEEEEEECTTS---SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEeecCCCeEEEEEccCC---CEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 999999999999988888888888854 578889888 999999987653 3344555666 9
Q ss_pred eeEEEEecCCCEEEEEECCCCEEEEECCC-CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc
Q 007855 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 507 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~ 507 (587)
+.+++|+|++++|++++.||.|++||++. ...+..+. .|...|.+++|+|++.+|++++.|+.|++||+.+...+...
T Consensus 178 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~ 256 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSID-LHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256 (369)
T ss_dssp EEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred eeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEe-cCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence 99999999999999999999999999998 56655554 58889999999999999999999999999999887655333
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEcCCC--------------cEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCE
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--------------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 573 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG--------------~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 573 (587)
. ....+..++|+|++++|++++.++ .|++||+.+++.+..+.+|...|++++|+| ++.+
T Consensus 257 ~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~ 329 (369)
T 3zwl_B 257 E------TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISP-QGTS 329 (369)
T ss_dssp E------CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECT-TSSE
T ss_pred c------CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECC-CCCE
Confidence 2 246688899999999999999988 899999999999999999999999999999 7789
Q ss_pred EEEEECCCcEEEcC
Q 007855 574 VATCGWDGLIKYWD 587 (587)
Q Consensus 574 l~s~g~DG~I~iWD 587 (587)
|++++.||.|+|||
T Consensus 330 l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 330 YASGGEDGFIRLHH 343 (369)
T ss_dssp EEEEETTSEEEEEE
T ss_pred EEEEcCCCeEEEEE
Confidence 99999999999996
No 18
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-37 Score=320.65 Aligned_cols=292 Identities=17% Similarity=0.263 Sum_probs=234.1
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC-CeeeEEE-cc-cCCceeeEEEecCCCeEEEEeCCC
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS-GKCMRTY-MG-HSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~-~~-h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
.++++++.+|.+.|.+++|+|+ +|++|+.|++|+||++... ...+..+ .+ |...|.+++|+|++++|++|+.|+
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~ 80 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTS
T ss_pred cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCC
Confidence 4578899999999999999976 9999999999999999322 2455666 44 999999999999999999999999
Q ss_pred eEEEEECCC-------CcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC----CcEEEEEccCCCCee
Q 007855 363 NIKYWDTET-------GQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 430 (587)
Q Consensus 363 ~I~vWd~~t-------~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t----~~~~~~~~~h~~~I~ 430 (587)
+|+|||+.. .+++..+..+ ..+.+++|+|++ .+|++|+.|+.|++||++. .+.+..+.+|...|+
T Consensus 81 ~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g---~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~ 157 (330)
T 2hes_X 81 TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG---YYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVK 157 (330)
T ss_dssp CEEEEEC-------CCCEEEEEEC----CEEEEEECTTS---CEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEE
T ss_pred cEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC---CEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceE
Confidence 999999853 3455555533 456678888754 5899999999999999953 256778899999999
Q ss_pred EEEEecCCCEEEEEECCCCEEEEECCCC--eEEEEeecCCCcceeEEEEeCC--CCEEEEEECCCeEEEEEcCCcee---
Q 007855 431 TITFVDNNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPHMHSMPSISLHPN--TNWLAAQSLDNQILIYSTRERFQ--- 503 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~i~~i~~sp~--g~~l~~~s~dg~I~iwd~~~~~~--- 503 (587)
+++|+|++.+|++++.|++|++||.... .++..+ ..|...|.+++|+|+ +.+|++++.|+.|++|++.....
T Consensus 158 ~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~ 236 (330)
T 2hes_X 158 HVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVL-NGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ 236 (330)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE-CCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSC
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEc-cCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcccc
Confidence 9999999999999999999999998766 444444 468899999999998 77999999999999999865411
Q ss_pred --ecccceecc-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe--eEEE-EecCCC-CEEEEEEcCC-CCCEEE
Q 007855 504 --LNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK--VFRT-LKCHEG-VCIGCEWHPL-EQSKVA 575 (587)
Q Consensus 504 --~~~~~~~~~-~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~--~~~~-l~~h~~-~V~~v~~sp~-~~~~l~ 575 (587)
......+.+ | ...|.+++|++++ +|++++.||.|+||+..+++ .+.. +.+|.. .|.+++|+|. ++.+|+
T Consensus 237 ~~~~~~~~~~~~h--~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~la 313 (330)
T 2hes_X 237 QEWVCEAILPDVH--KRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILA 313 (330)
T ss_dssp EEEEEEEECCSCC--SSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEE
T ss_pred ceeEEeeeccccc--ccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEE
Confidence 011122222 3 5678999999765 89999999999999998874 3333 357887 8999999995 467899
Q ss_pred EEECCCcEEEcC
Q 007855 576 TCGWDGLIKYWD 587 (587)
Q Consensus 576 s~g~DG~I~iWD 587 (587)
||+.||+|+|||
T Consensus 314 s~s~Dg~v~~W~ 325 (330)
T 2hes_X 314 TGGDDGIVNFWS 325 (330)
T ss_dssp EEETTSEEEEEE
T ss_pred EecCCCcEEEEE
Confidence 999999999996
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-37 Score=342.41 Aligned_cols=308 Identities=24% Similarity=0.489 Sum_probs=263.9
Q ss_pred cccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC
Q 007855 248 HVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF 327 (587)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~ 327 (587)
...+...+......|...|.|.. ..+++..+.+|...|.+++|+|+ +.+|++++.|++|++|++
T Consensus 269 ~~~~d~~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~t~~~d~~i~~w~~- 332 (577)
T 2ymu_A 269 AFRPDGQTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVWGVAFSPD-GQTIASASDDKTVKLWNR- 332 (577)
T ss_dssp EECTTSSEEEEEETTSCEEEEET--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-
T ss_pred EEcCCCCEEEEEeCCCEEEEEeC--------------CCcEEEEEecCCCCeEEEEECCC-CCEEEEEeCCCeEEEEeC-
Confidence 33444455566667777777742 23567889999999999999999 899999999999999998
Q ss_pred CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCC
Q 007855 328 NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDK 406 (587)
Q Consensus 328 ~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg 406 (587)
.+..+..+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+..+ ..+.++++.+++ .+|++++.|+
T Consensus 333 -~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg---~~l~~~~~d~ 407 (577)
T 2ymu_A 333 -NGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDG---QTIASASDDK 407 (577)
T ss_dssp -TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECTTS---SCEEEEETTS
T ss_pred -CCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECCCC---CEEEEEeCCC
Confidence 45667788999999999999999999999999999999996 56777776643 445678887754 4799999999
Q ss_pred cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEE
Q 007855 407 KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAA 486 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~ 486 (587)
.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||... ..+..+. .|...|.+++|+|++++|++
T Consensus 408 ~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~~~~~~~-~~~~~v~~~~~spd~~~las 484 (577)
T 2ymu_A 408 TVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-QLLQTLT-GHSSSVRGVAFSPDGQTIAS 484 (577)
T ss_dssp EEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-CEEEEEE-CCSSCEEEEEECTTSCEEEE
T ss_pred EEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-CEEEEEc-CCCCCEEEEEEcCCCCEEEE
Confidence 9999995 5678888999999999999999999999999999999999754 4444443 58889999999999999999
Q ss_pred EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 007855 487 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
++.|+.|++|+... .. ...+.+| ...|.+++|+|+|++|++++.||.|+|||. +++++..+.+|.+.|++++|
T Consensus 485 ~~~d~~i~iw~~~~-~~---~~~~~~h--~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~f 557 (577)
T 2ymu_A 485 ASDDKTVKLWNRNG-QL---LQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAF 557 (577)
T ss_dssp EETTSEEEEEETTS-CE---EEEEECC--SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEE
T ss_pred EeCCCEEEEEcCCC-CE---EEEEeCC--CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEE
Confidence 99999999999643 33 3455666 567899999999999999999999999995 78899999999999999999
Q ss_pred cCCCCCEEEEEECCCcEEEcC
Q 007855 567 HPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 567 sp~~~~~l~s~g~DG~I~iWD 587 (587)
+| ++++|+|+|.||+|++||
T Consensus 558 s~-dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 558 SP-DGQTIASASSDKTVKLWN 577 (577)
T ss_dssp CT-TSSCEEEEETTSCEEEEC
T ss_pred cC-CCCEEEEEeCCCEEEEeC
Confidence 99 778999999999999998
No 20
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-38 Score=336.09 Aligned_cols=300 Identities=14% Similarity=0.234 Sum_probs=246.3
Q ss_pred CCCceEEEE-cCCCCCeEEEEEcc-CCCcEEEEEeCCCeEEEEecCC---C--CeeeEEEcccCCceeeEEEecCCCeEE
Q 007855 284 IPKRLVHTW-SGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVFN---S--GKCMRTYMGHSKAVRDISFCNDGTKFL 356 (587)
Q Consensus 284 ~p~~~i~tl-~gH~~~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~---~--~~~~~~~~~h~~~V~~l~fs~dg~~l~ 356 (587)
...+++.++ .+|.+.|++|+|+| + +.+|++|+.||+|+|||+.. . ......+ +|...|++++|+|++.+|+
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~-~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~ 127 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGE-TPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFA 127 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSS-SCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEE
T ss_pred ccceEEeeeccCCCCceEEEEECCCC-CCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEE
Confidence 345778888 89999999999999 7 89999999999999999832 1 1223333 5999999999999999999
Q ss_pred EEeCCCeEEEEECC---CCcEEEEeec-------------CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE
Q 007855 357 TASYDKNIKYWDTE---TGQVIRTFST-------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 420 (587)
Q Consensus 357 s~s~Dg~I~vWd~~---t~~~i~~~~~-------------~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~ 420 (587)
+++.||.|++||++ +++.+..+.. .....++.+... ..+.+|++|+.|+.|++||+++++.+.
T Consensus 128 s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~iwd~~~~~~~~ 206 (437)
T 3gre_A 128 VSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVN-EEKSLLVALTNLSRVIIFDIRTLERLQ 206 (437)
T ss_dssp EEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEEC-SSCEEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCCCeeeE
Confidence 99999999999995 5655544331 222233333232 245799999999999999999999999
Q ss_pred EEcc--CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC----CCCEEEEEECCCeEE
Q 007855 421 EYDQ--HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP----NTNWLAAQSLDNQIL 494 (587)
Q Consensus 421 ~~~~--h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp----~g~~l~~~s~dg~I~ 494 (587)
.+.. |...|++++|+|++.+|++++.||.|++||++.+..+..+...+...|.+++|+| ++.+|++++.|+.|+
T Consensus 207 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 207 IIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp EEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred EEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 9988 8999999999999999999999999999999999998887666788999997765 577999999999999
Q ss_pred EEEcCCceeecccce---------------------ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q 007855 495 IYSTRERFQLNKKKR---------------------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT 553 (587)
Q Consensus 495 iwd~~~~~~~~~~~~---------------------~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~ 553 (587)
+||+.++..+..... +.+......|.+++|+ ++++|++|+.||.|++||+.+++.+..
T Consensus 287 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 287 IWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred EEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 999987765433321 1121135568889999 789999999999999999999887777
Q ss_pred Eec-------------------------------------CCCCEEEEEEcCC-CCCEEEEEECCCcEEEcC
Q 007855 554 LKC-------------------------------------HEGVCIGCEWHPL-EQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 554 l~~-------------------------------------h~~~V~~v~~sp~-~~~~l~s~g~DG~I~iWD 587 (587)
+.+ |...|++++|++. +..+|+||+.||.|+||+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 765 8899999999994 366999999999999995
No 21
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-37 Score=324.14 Aligned_cols=331 Identities=16% Similarity=0.202 Sum_probs=272.2
Q ss_pred CCCCCccccccce-Eeecccccccceeeee----CCCCcc-c--CCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEE
Q 007855 242 GGEKGEHVEDKST-FHGKEEKDYQGRSWVA----PPKDAK-A--ANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLIL 313 (587)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~d~~~r~w~~----~~~~~~-~--~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~ 313 (587)
..+......+... +.+....|..++.|.. ...... . .......+........+|...|++++|+|+ +.+|+
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~ 124 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHD-GNSIV 124 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTT-SSEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCC-CCEEE
Confidence 4455555666666 7788888999999977 332200 0 000000011111123347889999999998 99999
Q ss_pred EEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc----------
Q 007855 314 SAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI---------- 383 (587)
Q Consensus 314 sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~---------- 383 (587)
+|+.||.|+||+. .+..+..+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.....
T Consensus 125 ~~~~dg~i~i~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (425)
T 1r5m_A 125 TGVENGELRLWNK--TGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENH 202 (425)
T ss_dssp EEETTSCEEEEET--TSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC------------
T ss_pred EEeCCCeEEEEeC--CCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccc
Confidence 9999999999994 7888899999999999999999999999999999999999999999988876544
Q ss_pred ------ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC
Q 007855 384 ------PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 384 ------~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
...+.+.+. ..+++++.+|.|++||+.+++.+..+..|...|.+++|+|++++|++++.|+.|++||++.
T Consensus 203 ~~~~~~~~~~~~~~~----~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 203 SGDGSLGVDVEWVDD----DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp ---CCCBSCCEEEET----TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred cCCcceeeEEEEcCC----CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 556677664 3599999999999999999999999999999999999999999999999999999999998
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
...+..+. .|...+.+++|+|++ +|++++.|+.|++||+.++..+. .+..| ...+.+++|+|++++|++++.|
T Consensus 279 ~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~---~~~~~--~~~i~~~~~s~~~~~l~~~~~d 351 (425)
T 1r5m_A 279 GNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA---LSIVD--GVPIFAGRISQDGQKYAVAFMD 351 (425)
T ss_dssp BSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE---EEECT--TCCEEEEEECTTSSEEEEEETT
T ss_pred CccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE---ecccC--CccEEEEEEcCCCCEEEEEECC
Confidence 87766664 488899999999999 99999999999999998876543 33344 4578899999999999999999
Q ss_pred CcEEEEeCCCCe--------------------eEEEEecCCC--CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 538 GKCWFWDWKSCK--------------------VFRTLKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 538 G~I~vwd~~t~~--------------------~~~~l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|.|++||+.+++ ++..+..|.. .|++++|+| ++.+|++++.||.|+|||
T Consensus 352 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 422 (425)
T 1r5m_A 352 GQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNC-AGNKISVAYSLQEGSVVA 422 (425)
T ss_dssp SCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECT-TSSEEEEEESSSCCEEEE
T ss_pred CeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccC-CCceEEEEecCceEEEEe
Confidence 999999999888 8999999976 999999999 777999999999999996
No 22
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.1e-37 Score=324.56 Aligned_cols=290 Identities=13% Similarity=0.178 Sum_probs=250.9
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe------eeEEEcccCCceeeEEEecC----C---C
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK------CMRTYMGHSKAVRDISFCND----G---T 353 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~------~~~~~~~h~~~V~~l~fs~d----g---~ 353 (587)
++.+.+.+|.+.|++|+|+| .+|++|+.||.|+||++ ..+. ++..+.+|...|.+++|+++ + .
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~---~~l~s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~ 82 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN---SFTVSCSGDGYLKVWDN-KLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 82 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS---SEEEEEETTSEEEEEES-BCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC---CeEEEEcCCCEEEEEEC-CCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc
Confidence 45678889999999999988 69999999999999999 5555 78888899999999999999 9 9
Q ss_pred eEEEEeCCCeEEEEECCCCcE-----EEEeecC------CcceEEEEc----cCCCCCcE-EEEEeCCCcEEEEeCCC--
Q 007855 354 KFLTASYDKNIKYWDTETGQV-----IRTFSTG------KIPYVVKLN----PDDDKQNI-LLAGMSDKKIVQWDMNT-- 415 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t~~~-----i~~~~~~------~~~~~~~~~----~~~~~~~~-l~sg~~dg~I~iwD~~t-- 415 (587)
+|++++.|+.|++||+.+++. +..+..+ ..+.++.|. +++ .+ |++++.||.|++||+.+
T Consensus 83 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~l~~~~~dg~i~iwd~~~~~ 159 (397)
T 1sq9_A 83 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL---SHRLVATDVKGTTYIWKFHPFA 159 (397)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-------CEEEEEEETTSCEEEEEEESSS
T ss_pred EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC---ceEEEEEeCCCcEEEEeCCccc
Confidence 999999999999999998886 7777655 566788888 543 57 99999999999999998
Q ss_pred ----CcEEE-----EE-------ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC--C---CcceeE
Q 007855 416 ----KEITQ-----EY-------DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP--H---MHSMPS 474 (587)
Q Consensus 416 ----~~~~~-----~~-------~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~--~---~~~i~~ 474 (587)
+..+. .+ ..|...|.+++|+|++ +|++++.|+.|++||++....+..+... | ...|.+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~ 238 (397)
T 1sq9_A 160 DESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 238 (397)
T ss_dssp SHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEE
T ss_pred cccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccce
Confidence 66555 66 4589999999999999 9999999999999999999888777531 6 789999
Q ss_pred EEEeCCCCEEEEEECC---CeEEEEEcCCceeecccceeccc-----------ccccceEEEEEcCCCCEEEEEcCCCcE
Q 007855 475 ISLHPNTNWLAAQSLD---NQILIYSTRERFQLNKKKRFAGH-----------IVAGYACQVNFSPDGRFVMSGDGEGKC 540 (587)
Q Consensus 475 i~~sp~g~~l~~~s~d---g~I~iwd~~~~~~~~~~~~~~~~-----------~~~~~i~~l~~spdg~~L~sgs~dG~I 540 (587)
++|+|++.+|++++.| +.|++||+.+...+.. +.+. .....+.+++|+|++++|++++.||.|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 315 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS---LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKL 315 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEE---ECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccce---eccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeE
Confidence 9999999999999999 9999999987755433 3330 025678999999999999999999999
Q ss_pred EEEeCCCCeeEEEEe------cC---------------CCCEEEEEEcCCCC---------CEEEEEECCCcEEEcC
Q 007855 541 WFWDWKSCKVFRTLK------CH---------------EGVCIGCEWHPLEQ---------SKVATCGWDGLIKYWD 587 (587)
Q Consensus 541 ~vwd~~t~~~~~~l~------~h---------------~~~V~~v~~sp~~~---------~~l~s~g~DG~I~iWD 587 (587)
++||+.+++++..+. +| ...|++++|+|++. .+|++++.||.|+|||
T Consensus 316 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~ 392 (397)
T 1sq9_A 316 RFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 392 (397)
T ss_dssp EEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred EEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence 999999999999999 88 99999999999432 7999999999999996
No 23
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=9.5e-37 Score=344.99 Aligned_cols=289 Identities=23% Similarity=0.382 Sum_probs=246.6
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC----CeeeEEEcccCCceeeEEEecCCCeEEEEeCCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK 362 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~----~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg 362 (587)
++...+++|++.|++|+|+|+++++|+||+.|++|+||++... +...+.+.+|...|.+++|+|++++|++|+.|+
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg 452 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG 452 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4556899999999999999987789999999999999998432 345678899999999999999999999999999
Q ss_pred eEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCCCeeEEEEecCC
Q 007855 363 NIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITFVDNN 438 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~~I~~i~~sp~~ 438 (587)
+|+|||+.++..+..+..+ ..+.+++|++++ .+|++|+.|+.|++||+......... .+|...|.+++|+|++
T Consensus 453 ~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 453 ELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN---RQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECTTS---SCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred cEEEEECCCCcceeEEeCCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 9999999999998888754 445678888754 47999999999999998765443332 4688999999999986
Q ss_pred --CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccc
Q 007855 439 --RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 439 --~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
..|++++.|++|++||++.......+. .|...|.+++|+|++++|++++.|+.|++||+.++..+... .. .
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~---~~---~ 602 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLA-GHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSL---EA---N 602 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECC---BC---S
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEe---cC---C
Confidence 589999999999999999988877664 58899999999999999999999999999999887665332 22 3
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC-------------------CCEEEEEEcCCCCCEEEEE
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE-------------------GVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~-------------------~~V~~v~~sp~~~~~l~s~ 577 (587)
..+.+++|+|++.+|++++. +.|+|||+.+++++..+..+. ..|++++|+| ++.+|++|
T Consensus 603 ~~v~~~~~sp~~~~l~~~~~-~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sp-dg~~l~sg 680 (694)
T 3dm0_A 603 SVIHALCFSPNRYWLCAATE-HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSA-DGSTLFSG 680 (694)
T ss_dssp SCEEEEEECSSSSEEEEEET-TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECT-TSSEEEEE
T ss_pred CcEEEEEEcCCCcEEEEEcC-CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcC-CCCEEEEE
Confidence 56888999999998887764 569999999999888776432 1378999999 78899999
Q ss_pred ECCCcEEEcC
Q 007855 578 GWDGLIKYWD 587 (587)
Q Consensus 578 g~DG~I~iWD 587 (587)
+.||+|+|||
T Consensus 681 s~Dg~i~iW~ 690 (694)
T 3dm0_A 681 YTDGVIRVWG 690 (694)
T ss_dssp ETTSEEEEEE
T ss_pred cCCCeEEEEe
Confidence 9999999996
No 24
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=5.7e-37 Score=320.59 Aligned_cols=291 Identities=16% Similarity=0.224 Sum_probs=242.5
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc--ccCCceeeEEEec-CCCeEEEEeCC
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM--GHSKAVRDISFCN-DGTKFLTASYD 361 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fs~-dg~~l~s~s~D 361 (587)
+.++..++.+|...|++++|+|++..+|++|+.||.|+|||+ ..+.....+. +|...|.+++|+| ++.+|++++.|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 140 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDY-DVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIR 140 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEET-TSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeC-CCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence 456778999999999999999993399999999999999999 5666666655 6999999999999 78999999999
Q ss_pred CeEEEEECCCCcEEEEeecC----CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 362 KNIKYWDTETGQVIRTFSTG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~----~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
+.|++||+.+ ..+..+... ..+.++++++++ .+|++|+.|+.|++||+ +++.+..+..|...|.+++|+|+
T Consensus 141 ~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~~ 215 (383)
T 3ei3_B 141 GATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSR---QMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNPR 215 (383)
T ss_dssp TEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTT---TEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECSS
T ss_pred CEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCC---CEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECCC
Confidence 9999999996 455555432 346678888754 58999999999999999 57788889999999999999999
Q ss_pred CC-EEEEEECCCCEEEEECCC----CeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceec
Q 007855 438 NR-RFVTSSDDKSLRVWEFGI----PVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 438 ~~-~l~s~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
++ +|++++.|+.|++||++. ...+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++...........
T Consensus 216 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 293 (383)
T 3ei3_B 216 CDWLMATSSVDATVKLWDLRNIKDKNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP 293 (383)
T ss_dssp CTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC
T ss_pred CCCEEEEEeCCCEEEEEeCCCCCcccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc
Confidence 99 999999999999999987 5666665 4888999999999 99999999999999999998765443222111
Q ss_pred ----ccc--------cccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcCCCCCEEEEE
Q 007855 512 ----GHI--------VAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 512 ----~~~--------~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~ 577 (587)
.+. ....+..++|+|+|++ +|+.||.|+|||+.+++++..+.+ |...+..++|+| ++.+|+++
T Consensus 294 ~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~-~g~~l~s~ 370 (383)
T 3ei3_B 294 HRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSP-TGDVLASG 370 (383)
T ss_dssp BCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECT-TSSEEEEE
T ss_pred ccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEec-CccEEEEe
Confidence 000 0133445777777777 788999999999999999999987 457778889999 77899999
Q ss_pred ECCCcEEEcC
Q 007855 578 GWDGLIKYWD 587 (587)
Q Consensus 578 g~DG~I~iWD 587 (587)
+ ||.|+|||
T Consensus 371 s-d~~i~iw~ 379 (383)
T 3ei3_B 371 M-GFNILIWN 379 (383)
T ss_dssp E-TTEEEEEE
T ss_pred c-CCcEEEEe
Confidence 7 99999997
No 25
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=4.1e-37 Score=322.32 Aligned_cols=299 Identities=16% Similarity=0.209 Sum_probs=250.6
Q ss_pred CceEEEEcCCCCCeEEEEEcc-CCCcEEEEEeCCCeEEEEecCCCCeeeEEE-------------cccCCceeeEEEec-
Q 007855 286 KRLVHTWSGHTKGVSAIRFFP-KYGHLILSAGMDTKVKIWDVFNSGKCMRTY-------------MGHSKAVRDISFCN- 350 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-------------~~h~~~V~~l~fs~- 350 (587)
.+....+.+|.+.|++|+|+| + +.+|++|+.||.|+||++ ..+.....+ .+|...|.+++|+|
T Consensus 33 ~~~~~~~~~h~~~v~~~~~s~~~-~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 110 (408)
T 4a11_B 33 NKDRDVERIHGGGINTLDIEPVE-GRYMLSGGSDGVIVLYDL-ENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPH 110 (408)
T ss_dssp CTTEEECCCCSSCEEEEEECTTT-CCEEEEEETTSCEEEEEC-CCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTT
T ss_pred CcceeeeeccCCcEEEEEEecCC-CCEEEEEcCCCeEEEEEC-CCCcccceEeccccccccccccccCCCcEEEEEEccC
Confidence 345678889999999999999 7 999999999999999999 454433333 25999999999999
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCee
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVN 430 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~ 430 (587)
++.+|++++.||.|++||+.+++.+..+........+.+.+......++++|+.++.|++||+++++.+..+..|...|.
T Consensus 111 ~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~ 190 (408)
T 4a11_B 111 DTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEIL 190 (408)
T ss_dssp CTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEE
T ss_pred CCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEE
Confidence 78899999999999999999999999999888888999999887778999999999999999999999999999999999
Q ss_pred EEEEecCCC-EEEEEECCCCEEEEECCCCe-EEEEee--------------cCCCcceeEEEEeCCCCEEEEEECCCeEE
Q 007855 431 TITFVDNNR-RFVTSSDDKSLRVWEFGIPV-VIKYIS--------------EPHMHSMPSISLHPNTNWLAAQSLDNQIL 494 (587)
Q Consensus 431 ~i~~sp~~~-~l~s~s~Dg~I~iwd~~~~~-~~~~~~--------------~~~~~~i~~i~~sp~g~~l~~~s~dg~I~ 494 (587)
+++|+|++. .|++++.||.|++||++... .+..+. ..|...|.+++|+|++++|++++.|+.|+
T Consensus 191 ~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 270 (408)
T 4a11_B 191 AVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMR 270 (408)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEE
Confidence 999999998 58999999999999998764 222221 35778899999999999999999999999
Q ss_pred EEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEE
Q 007855 495 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 574 (587)
Q Consensus 495 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 574 (587)
+||+.++.................+........+..+++++.++.|++||+.+++++..+.+|...|++++|+| ++.+|
T Consensus 271 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l 349 (408)
T 4a11_B 271 LWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQEL 349 (408)
T ss_dssp EEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEET-TTTEE
T ss_pred EEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcC-CCCEE
Confidence 99998765443222111111111111122233455667777899999999999999999999999999999999 77899
Q ss_pred EEEECCCcEEEcC
Q 007855 575 ATCGWDGLIKYWD 587 (587)
Q Consensus 575 ~s~g~DG~I~iWD 587 (587)
++++.||.|++||
T Consensus 350 ~s~~~dg~i~iw~ 362 (408)
T 4a11_B 350 YSGSRDCNILAWV 362 (408)
T ss_dssp EEEETTSCEEEEE
T ss_pred EEECCCCeEEEEe
Confidence 9999999999996
No 26
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=5e-36 Score=305.66 Aligned_cols=282 Identities=14% Similarity=0.291 Sum_probs=244.1
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe---eeEEEc--ccCCceeeEEEecCCCeEEEEeCCCeE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK---CMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNI 364 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~--~h~~~V~~l~fs~dg~~l~s~s~Dg~I 364 (587)
....+|...|++++|+|+ +.+|++++ ||.|+||++. .+. .+..+. +|...|.+++|+|++++|++++.|+.|
T Consensus 45 ~~~~~h~~~v~~~~~~~~-~~~l~~~~-dg~i~iw~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i 121 (337)
T 1gxr_A 45 INTLNHGEVVCAVTISNP-TRHVYTGG-KGCVKVWDIS-HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTL 121 (337)
T ss_dssp EEEECCSSCCCEEEECSS-SSEEEEEC-BSEEEEEETT-STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEE
T ss_pred ceeccCCCceEEEEEecC-CcEEEEcC-CCeEEEEECC-CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcE
Confidence 344589999999999999 89999999 9999999994 332 333433 799999999999999999999999999
Q ss_pred EEEECCCCc--EEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 365 KYWDTETGQ--VIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 365 ~vWd~~t~~--~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
++||+.+++ ....+..+ ....++.+.+++ .++++++.||.|++||+++++.+..+..|...|.+++|+|++++|
T Consensus 122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 198 (337)
T 1gxr_A 122 SIWDLAAPTPRIKAELTSSAPACYALAISPDS---KVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKL 198 (337)
T ss_dssp EEEECCCC--EEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEE
T ss_pred EEEECCCCCcceeeecccCCCceEEEEECCCC---CEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEE
Confidence 999999887 44444433 345677777743 589999999999999999999999999999999999999999999
Q ss_pred EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEE
Q 007855 442 VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
++++.|+.|++||++....+..+ .+...+.+++|+|++.+|++++.++.|++|++.+.... .+..| ...+.+
T Consensus 199 ~~~~~dg~i~~~d~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~----~~~~~--~~~v~~ 270 (337)
T 1gxr_A 199 WTGGLDNTVRSWDLREGRQLQQH--DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY----QLHLH--ESCVLS 270 (337)
T ss_dssp EEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE----EECCC--SSCEEE
T ss_pred EEEecCCcEEEEECCCCceEeee--cCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE----EEcCC--ccceeE
Confidence 99999999999999999888776 36778999999999999999999999999999876432 23344 567889
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 522 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 522 l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|+| ++.+|++++.||.|++||
T Consensus 271 ~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp EEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEE
T ss_pred EEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEE
Confidence 999999999999999999999999999887554 4888999999999 778999999999999996
No 27
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.4e-36 Score=332.92 Aligned_cols=311 Identities=23% Similarity=0.479 Sum_probs=265.0
Q ss_pred CccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEe
Q 007855 246 GEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 325 (587)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 325 (587)
.....+...+......|...|.|.. ..+++.++.+|...|++++|+|+ +.+|++++.|+.|++|+
T Consensus 226 ~~~~s~dg~~l~~~~~d~~i~~w~~--------------~~~~~~~~~~~~~~v~~v~~~~d-~~~l~~~~~d~~i~~w~ 290 (577)
T 2ymu_A 226 GVAFSPDGQTIASASDDKTVKLWNR--------------NGQLLQTLTGHSSSVNGVAFRPD-GQTIASASDDKTVKLWN 290 (577)
T ss_dssp EEEECTTSSCEEEEETTSCEEEECT--------------TSCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeC--------------CCCEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCEEEEEe
Confidence 3334444555566677777787732 23567889999999999999999 89999999999999999
Q ss_pred cCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC
Q 007855 326 VFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 326 ~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 405 (587)
. .++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+..............+.++++.|++ .+|++|+.|
T Consensus 291 ~--~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g---~~l~~~~~d 365 (577)
T 2ymu_A 291 R--NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG---QTIASASDD 365 (577)
T ss_dssp T--TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS---SEEEEEETT
T ss_pred C--CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC---CEEEEEeCC
Confidence 7 67888899999999999999999999999999999999998765544333344556677887754 589999999
Q ss_pred CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEE
Q 007855 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLA 485 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 485 (587)
+.|++||. +++.+..+..|...|++++|+|++++|++++.|+.|++||.. ...+..+. .|...|.+++|+|++++|+
T Consensus 366 g~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 366 KTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp SEEEEEET-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-CCEEEEEE-CCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEcC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCC-CCEEEEec-CCCCCeEEEEECCCCCEEE
Confidence 99999995 567888899999999999999999999999999999999964 44555543 5888999999999999999
Q ss_pred EEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEE
Q 007855 486 AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCE 565 (587)
Q Consensus 486 ~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~ 565 (587)
+++.|+.|++|++... . ...+.+| ...+.+++|+|++++|++++.|+.|++||. +++++..+.+|...|++++
T Consensus 443 ~~~~d~~v~~w~~~~~-~---~~~~~~~--~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~ 515 (577)
T 2ymu_A 443 SASDDKTVKLWNRNGQ-L---LQTLTGH--SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA 515 (577)
T ss_dssp EEETTSEEEEEETTSC-E---EEEEECC--SSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEE
T ss_pred EEcCCCEEEEEECCCC-E---EEEEcCC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEE
Confidence 9999999999997542 2 2345555 467889999999999999999999999994 7889999999999999999
Q ss_pred EcCCCCCEEEEEECCCcEEEcC
Q 007855 566 WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 566 ~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|+| ++.+|++++.||.|+|||
T Consensus 516 ~s~-dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 516 FSP-DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ECT-TSSCEEEEETTSEEEEEC
T ss_pred EcC-CCCEEEEEECcCEEEEEe
Confidence 999 778999999999999997
No 28
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-36 Score=302.23 Aligned_cols=283 Identities=15% Similarity=0.241 Sum_probs=245.4
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~ 363 (587)
.+.++++++.+|.+.|++++| |+ +.+|++|+.||.|+|||+ ..+.....+..|...|.+++|+|++++|++++.|+.
T Consensus 6 ~~~~~~~~l~~h~~~v~~~~~-~~-~~~l~s~~~dg~v~vw~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 82 (313)
T 3odt_A 6 TGYQLSATLKGHDQDVRDVVA-VD-DSKVASVSRDGTVRLWSK-DDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTM 82 (313)
T ss_dssp CCCEEEEEECCCSSCEEEEEE-EE-TTEEEEEETTSEEEEEEE-SSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSC
T ss_pred ccHHHHHHhhCCCCCcEEEEe-cC-CCEEEEEEcCCcEEEEEC-CCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCe
Confidence 456788999999999999999 87 889999999999999999 788888999999999999999999999999999999
Q ss_pred EEEEECCCC---cEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-CC
Q 007855 364 IKYWDTETG---QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-NN 438 (587)
Q Consensus 364 I~vWd~~t~---~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~~ 438 (587)
|++|++... +.+..+..+ ..+.++.+ + +.++++++.|+.|++|| .+..+..+..|...|.++.|+| ++
T Consensus 83 i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~---~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~ 155 (313)
T 3odt_A 83 INGVPLFATSGEDPLYTLIGHQGNVCSLSF--Q---DGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSE 155 (313)
T ss_dssp EEEEETTCCTTSCC-CEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTT
T ss_pred EEEEEeeecCCCCcccchhhcccCEEEEEe--c---CCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCC
Confidence 999998764 445555433 33344444 2 35899999999999999 7778888899999999999998 89
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
.+|++++.|+.|++|| .......+...+...+.+++|+|++. |++++.|+.|++||++++..+ ..+.+| ...
T Consensus 156 ~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~---~~~~~~--~~~ 227 (313)
T 3odt_A 156 NKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL---RTYEGH--ESF 227 (313)
T ss_dssp TEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE---EEEECC--SSC
T ss_pred CEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh---hhhhcC--Cce
Confidence 9999999999999999 44555666556889999999999998 999999999999999877554 334455 567
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.+++|+|++ .|++++.||.|++||+.+++++..+..|...|.+++|+| ++. +++++.||.|++||
T Consensus 228 i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~-~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 228 VYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMS-NGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECT-TSC-EEEEETTSCEEEEE
T ss_pred EEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEcc-CCC-EEEEeCCCcEEEEe
Confidence 8999999999 688999999999999999999999999999999999999 554 77899999999996
No 29
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=313.62 Aligned_cols=296 Identities=13% Similarity=0.271 Sum_probs=242.9
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeC---CCeEEEEecCCCCeeeEE-EcccCCceeeEEEecC---CCeEEEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM---DTKVKIWDVFNSGKCMRT-YMGHSKAVRDISFCND---GTKFLTA 358 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~---Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fs~d---g~~l~s~ 358 (587)
..+.+.+.+|...|++|+|+|++..++++|+. ||.|+||++ .+++.... ..+|...|.+++|+|+ +.+|+++
T Consensus 8 ~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~ 86 (357)
T 3i2n_A 8 QIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEI-QHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATG 86 (357)
T ss_dssp CEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEE-CSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEE
T ss_pred HHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeC-CCCcccceeeecccCcEEEEEEcCCCCCCceEEEe
Confidence 34556778999999999999994467777776 999999999 55554433 4479999999999998 7999999
Q ss_pred eCCCeEEEEECCCCc-EEEEeecC-CcceEEEEcc---CCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEccCCC----C
Q 007855 359 SYDKNIKYWDTETGQ-VIRTFSTG-KIPYVVKLNP---DDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLG----A 428 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~-~i~~~~~~-~~~~~~~~~~---~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~~h~~----~ 428 (587)
+.||.|++||+.+++ .+..+..+ ..+.++.+.+ ....+.+|++|+.||.|++||++++. .+..+..|.+ .
T Consensus 87 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~ 166 (357)
T 3i2n_A 87 DFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRD 166 (357)
T ss_dssp ETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCC
T ss_pred cCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCc
Confidence 999999999999988 77777644 3445565542 22345689999999999999999986 7788876655 8
Q ss_pred eeEEE----EecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC---CCCEEEEEECCCeEEEEEcCCc
Q 007855 429 VNTIT----FVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP---NTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 429 I~~i~----~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp---~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
|.++. |++++++|++++.|+.|++||++........ .+...+.+++|+| ++.+|++++.||.|++||+++.
T Consensus 167 v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 244 (357)
T 3i2n_A 167 CWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ 244 (357)
T ss_dssp EEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred eEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence 99998 6789999999999999999999998876554 5778999999999 9999999999999999999876
Q ss_pred eeecccc--eecccccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCC-------------------eeEEEEecCCC
Q 007855 502 FQLNKKK--RFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSC-------------------KVFRTLKCHEG 559 (587)
Q Consensus 502 ~~~~~~~--~~~~~~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~t~-------------------~~~~~l~~h~~ 559 (587)
....... .+.+| ...+.+++|+|+++ +|++|+.||.|++||+.++ +++..+.+|..
T Consensus 245 ~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 322 (357)
T 3i2n_A 245 HPTKGFASVSEKAH--KSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ 322 (357)
T ss_dssp ETTTEEEEEEEECC--SSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS
T ss_pred CcccceeeeccCCC--cCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC
Confidence 5443322 22245 57799999999999 8999999999999999753 46788899999
Q ss_pred CEEEEEEcCCCCCEEE-EEECCCcEEEcC
Q 007855 560 VCIGCEWHPLEQSKVA-TCGWDGLIKYWD 587 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~-s~g~DG~I~iWD 587 (587)
.|++++|+| ++.+|+ +++.||.|+|||
T Consensus 323 ~v~~~~~s~-~~~~l~~s~~~d~~i~iw~ 350 (357)
T 3i2n_A 323 PISSLDWSP-DKRGLCVCSSFDQTVRVLI 350 (357)
T ss_dssp CEEEEEECS-SSTTEEEEEETTSEEEEEE
T ss_pred CeeEEEEcC-CCCeEEEEecCCCcEEEEE
Confidence 999999999 555666 899999999997
No 30
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.2e-36 Score=322.62 Aligned_cols=284 Identities=21% Similarity=0.432 Sum_probs=245.2
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 318 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D 318 (587)
++...+......+...+.++...|..++.|-.. ..++++++.+|.+.|++|+|+|+ +.+|++|+.|
T Consensus 106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~-------------~~~~~~~l~~h~~~V~~v~~~~~-~~~l~sgs~D 171 (410)
T 1vyh_C 106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE-------------TGDFERTLKGHTDSVQDISFDHS-GKLLASCSAD 171 (410)
T ss_dssp CCSSCEEEEEECSSSSEEEEEESSSCEEEEETT-------------TCCCCEEECCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-------------CCcEEEEEeccCCcEEEEEEcCC-CCEEEEEeCC
Confidence 344444444455566677778888888888543 33466889999999999999999 8999999999
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCCc
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQN 397 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~ 397 (587)
++|+|||+ ..++++.++.+|...|.+++|+|++.+|++|+.|++|++||+.++.++..+..+.. ..++.+.++ +.
T Consensus 172 ~~i~iwd~-~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~---g~ 247 (410)
T 1vyh_C 172 MTIKLWDF-QGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQD---GT 247 (410)
T ss_dssp SCCCEEET-TSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTT---SS
T ss_pred CeEEEEeC-CCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCC---CC
Confidence 99999999 78899999999999999999999999999999999999999999999998875543 445566554 36
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC--------------------CCEEEEEECCCCEEEEECCC
Q 007855 398 ILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN--------------------NRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~--------------------~~~l~s~s~Dg~I~iwd~~~ 457 (587)
+|++|+.|+.|++||+.+++....+..|...|.+++|+|+ +.+|++|+.|+.|++||+++
T Consensus 248 ~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~ 327 (410)
T 1vyh_C 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327 (410)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTT
T ss_pred EEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCC
Confidence 8999999999999999999999999999999999999986 67899999999999999999
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
+.++..+. .|...|.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.+++|+|++.+|++|+.|
T Consensus 328 ~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---~~~~~h--~~~v~~l~~~~~~~~l~sgs~D 401 (410)
T 1vyh_C 328 GMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---KTLNAH--EHFVTSLDFHKTAPYVVTGSVD 401 (410)
T ss_dssp TEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC---EEEECC--SSCEEEEEECSSSSCEEEEETT
T ss_pred CceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE---EEEcCC--CCcEEEEEEcCCCCEEEEEeCC
Confidence 99887775 58889999999999999999999999999999876544 445566 5679999999999999999999
Q ss_pred CcEEEEeCC
Q 007855 538 GKCWFWDWK 546 (587)
Q Consensus 538 G~I~vwd~~ 546 (587)
|.|+||+++
T Consensus 402 ~~i~vW~~r 410 (410)
T 1vyh_C 402 QTVKVWECR 410 (410)
T ss_dssp SEEEEEC--
T ss_pred CcEEEEeCC
Confidence 999999863
No 31
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=4.2e-36 Score=307.19 Aligned_cols=297 Identities=21% Similarity=0.401 Sum_probs=242.6
Q ss_pred cCCCCCCCCccccc-cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 238 KGNAGGEKGEHVED-KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
.++.+.+......+ ...+..+...|..+|.|.....+. ....+++++.+|...|++++|+|+ +.+|++|+
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~~~~s~d-g~~l~s~s 84 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ--------KFGVPVRSFKGHSHIVQDCTLTAD-GAYALSAS 84 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT--------EEEEEEEEEECCSSCEEEEEECTT-SSEEEEEE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc--------cccccceEEeCCcccEEEEEECCC-CCEEEEEe
Confidence 35555555544443 346778899999999997653221 112457889999999999999999 99999999
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee-cCCcceEEEEccCCC-
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDD- 394 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~- 394 (587)
.|++|+|||+ .+++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.. +++..+. .......+.+.|...
T Consensus 85 ~D~~v~~wd~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~ 162 (319)
T 3frx_A 85 WDKTLRLWDV-ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKA 162 (319)
T ss_dssp TTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC---
T ss_pred CCCEEEEEEC-CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCC
Confidence 9999999999 78999999999999999999999999999999999999999975 4555554 334556777777532
Q ss_pred --CCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcce
Q 007855 395 --KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 395 --~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
...++++++.|+.|++||+++.+....+.+|...|++++|+|++++|++++.|+.|++||+.....+..+. ....|
T Consensus 163 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v 240 (319)
T 3frx_A 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEV 240 (319)
T ss_dssp ---CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CCSCE
T ss_pred CCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEec--CCCcE
Confidence 34589999999999999999999999999999999999999999999999999999999999999888775 45689
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce-ecc--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~--~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
.+++|+|++.+|++++. +.|++|++.....+..... +.+ ......+.+++|+|+|++|++|+.||.|+|||+.++
T Consensus 241 ~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 241 FSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999999999998875 4599999987654432221 111 112456788999999999999999999999998764
No 32
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=7.5e-36 Score=305.81 Aligned_cols=273 Identities=18% Similarity=0.320 Sum_probs=241.8
Q ss_pred cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe
Q 007855 252 KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK 331 (587)
Q Consensus 252 ~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~ 331 (587)
.+.+.++...|..+|.|...... ..+..++.+|...|.+++|+++ +.++++|+.|++|+|||+ .+++
T Consensus 47 ~~~~l~tgs~D~~v~vW~~~~~~-----------~~~~~~l~gh~~~v~~~~~~~~-~~~l~s~s~D~~i~lWd~-~~~~ 113 (321)
T 3ow8_A 47 NSETVVTGSLDDLVKVWKWRDER-----------LDLQWSLEGHQLGVVSVDISHT-LPIAASSSLDAHIRLWDL-ENGK 113 (321)
T ss_dssp --CEEEEEETTSCEEEEEEETTE-----------EEEEEEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTE
T ss_pred CCCEEEEEcCCCCEEEEECCCCC-----------eeeeeeeccCCCCEEEEEECCC-CCEEEEEeCCCcEEEEEC-CCCC
Confidence 35577889999999999764321 1345678999999999999999 899999999999999999 7889
Q ss_pred eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 332 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 332 ~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
++..+..|...+.+++|+|++++|++++.|+.|++|++++++....+... ..+.+++++|++ .+|++|+.||.|++
T Consensus 114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg---~~lasg~~dg~i~i 190 (321)
T 3ow8_A 114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG---KYLASGAIDGIINI 190 (321)
T ss_dssp EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS---SEEEEEETTSCEEE
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC---CEEEEEcCCCeEEE
Confidence 99999999999999999999999999999999999999999988877654 345677888754 58999999999999
Q ss_pred EeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC
Q 007855 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 490 (587)
Q Consensus 411 wD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d 490 (587)
||+++++.+..+.+|...|++++|+|++++|++++.|+.|++||++.......+. .|...|.+++|+|++.+|++++.|
T Consensus 191 wd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D 269 (321)
T 3ow8_A 191 FDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSD 269 (321)
T ss_dssp EETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETT
T ss_pred EECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999988877664 588899999999999999999999
Q ss_pred CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 491 NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
+.|++||+.++..+. .+.+| ...|.+++|+|+|++|++++.||.|+|||..
T Consensus 270 ~~v~iwd~~~~~~~~---~~~~h--~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 270 KSVKVWDVGTRTCVH---TFFDH--QDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp SCEEEEETTTTEEEE---EECCC--SSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred CcEEEEeCCCCEEEE---EEcCC--CCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 999999998876553 44555 4678999999999999999999999999963
No 33
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=4.1e-36 Score=304.96 Aligned_cols=249 Identities=20% Similarity=0.351 Sum_probs=219.9
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
...+++.+|...|++++|+|++++|++++.||+|+|||+.++..+..+..+. ...++.|.+++ ++|++|+.|+.|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~s~d~~i~ 80 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK---NWIIVGSDDFRIR 80 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG---TEEEEEETTSEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC---CEEEEECCCCEEE
Confidence 4567889999999999999999999999999999999999999998887654 45677888754 5899999999999
Q ss_pred EEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEE
Q 007855 410 QWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQS 488 (587)
Q Consensus 410 iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s 488 (587)
+||+.+++.+..+.+|...|++++|+|++++|++++.|++|++||++...........|...|.+++|+| ++.+|++++
T Consensus 81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred EEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999999999999999999999999999988655555567999999999999 678999999
Q ss_pred CCCeEEEEEcCCceeecccceecccccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
.|+.|++||+......... ..++ ...+..+.|+| ++.+|++|+.||.|++||+++++++..+.+|...|.+++|
T Consensus 161 ~D~~v~iwd~~~~~~~~~~--~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~ 236 (304)
T 2ynn_A 161 LDRTVKVWSLGQSTPNFTL--TTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVF 236 (304)
T ss_dssp TTSEEEEEETTCSSCSEEE--ECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE
T ss_pred CCCeEEEEECCCCCcccee--ccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEE
Confidence 9999999999765433211 1222 24566788876 7889999999999999999999999999999999999999
Q ss_pred cCCCCCEEEEEECCCcEEEcC
Q 007855 567 HPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 567 sp~~~~~l~s~g~DG~I~iWD 587 (587)
+| ++.+|++|+.||+|+|||
T Consensus 237 ~p-~~~~l~s~s~Dg~i~iWd 256 (304)
T 2ynn_A 237 HP-TLPIIISGSEDGTLKIWN 256 (304)
T ss_dssp CS-SSSEEEEEETTSCEEEEE
T ss_pred CC-CCCEEEEEcCCCeEEEEE
Confidence 99 777999999999999997
No 34
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.3e-36 Score=313.14 Aligned_cols=284 Identities=15% Similarity=0.183 Sum_probs=241.5
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
+..|...|++++|+|+ +++|++|+.|+.|+||++ ..++ .+..+.+|...|.+++|+|++++|++++.||.|++||+
T Consensus 4 ~~~~~~~i~~~~~s~~-~~~l~~~~~d~~v~i~~~-~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~ 81 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKD-RTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL 81 (372)
T ss_dssp EESCSSCCCEEEECTT-SSEEEEECSSSEEEEEEE-ETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred ecccCCCeEEEEECCC-CCEEEEEeCCCEEEEEeC-CCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence 4569999999999999 999999999999999999 5666 88889999999999999999999999999999999999
Q ss_pred CCCcEEEEee---cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE---E-EEEccCCCCeeEEEEecCCCEEE
Q 007855 370 ETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---T-QEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 370 ~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~---~-~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
.+++....+. ....+.++.|.+++ .+|++++.|+.|++||+..+.. . .....|...|.+++|+|++++|+
T Consensus 82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 82 KGRTWKPTLVILRINRAARCVRWAPNE---KKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp ETTEEEEEEECCCCSSCEEEEEECTTS---SEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCeeeeeEEeecCCCceeEEEECCCC---CEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 9988665543 34456677777754 6899999999999999988762 3 33367899999999999999999
Q ss_pred EEECCCCEEEEECC------------------CCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 443 TSSDDKSLRVWEFG------------------IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 443 s~s~Dg~I~iwd~~------------------~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
+++.|+.|++||++ ....+..+. .|...+.+++|+|++.+|++++.|+.|++||++++..+
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 237 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 237 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhheEecC-CCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee
Confidence 99999999999954 556666654 58889999999999999999999999999999877554
Q ss_pred cccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--Cee--E-----------------------------
Q 007855 505 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--CKV--F----------------------------- 551 (587)
Q Consensus 505 ~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t--~~~--~----------------------------- 551 (587)
. .+..| ...+.+++|+|++.+|++| .||.|++|++.+ ++. +
T Consensus 238 ~---~~~~~--~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 238 A---TLASE--TLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp E---EEECS--SCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred E---EEccC--CCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 3 34444 4578899999999999988 899999999988 421 0
Q ss_pred -------EEE-ecCCCCEEEEEEcCCCC---CEEEEEECCCcEEEcC
Q 007855 552 -------RTL-KCHEGVCIGCEWHPLEQ---SKVATCGWDGLIKYWD 587 (587)
Q Consensus 552 -------~~l-~~h~~~V~~v~~sp~~~---~~l~s~g~DG~I~iWD 587 (587)
..+ .+|...|++++|++.++ .+|+||+.||.|+|||
T Consensus 312 ~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~ 358 (372)
T 1k8k_C 312 EGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD 358 (372)
T ss_dssp -------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred ccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence 223 48999999999887566 8999999999999996
No 35
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.9e-36 Score=311.13 Aligned_cols=289 Identities=17% Similarity=0.262 Sum_probs=240.8
Q ss_pred EEcCCCCCeEEEEEccC---CCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-----cCCceeeEEEecC----CCeEEEE
Q 007855 291 TWSGHTKGVSAIRFFPK---YGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-----HSKAVRDISFCND----GTKFLTA 358 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~---~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-----h~~~V~~l~fs~d----g~~l~s~ 358 (587)
...+|...|++|+|+|. +..++++++.++.|+||++ ..+..+..+.. |...|.+++|+|+ +.+|++|
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~ 91 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYEC-HSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA 91 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEE-CGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEc-CCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence 44599999999999983 3566777777789999999 56666665553 5678999999998 6799999
Q ss_pred eCCCeEEEEECCCCcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCCCeeEEEE
Q 007855 359 SYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVNTITF 434 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~~I~~i~~ 434 (587)
+.||.|++||+.+++.+..+. ....+.++.|++. .+.+|++|+.||.|++||+++++.+..+ ..|...|.+++|
T Consensus 92 ~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 92 GSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR--DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp ETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS--CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred cCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC--CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999887 4455667788772 3368999999999999999999999888 789999999999
Q ss_pred ecCCCEEEEEECCCCEEEEECCCCeEEEEe---------------------------ecCCCcceeEEEEeCCCCEEEEE
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKYI---------------------------SEPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~---------------------------~~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
+|++.+|++++.||.|++||++.......+ ...|...|.+++|+ +.+|+++
T Consensus 170 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~ 247 (366)
T 3k26_A 170 DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSK 247 (366)
T ss_dssp CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEE
T ss_pred CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEE
Confidence 999999999999999999999875432211 12378889999999 7799999
Q ss_pred ECCCeEEEEEcCCceee-----------cccceecccccccceEEEEEcCC--CCEEEEEcCCCcEEEEeCCCCe----e
Q 007855 488 SLDNQILIYSTRERFQL-----------NKKKRFAGHIVAGYACQVNFSPD--GRFVMSGDGEGKCWFWDWKSCK----V 550 (587)
Q Consensus 488 s~dg~I~iwd~~~~~~~-----------~~~~~~~~~~~~~~i~~l~~spd--g~~L~sgs~dG~I~vwd~~t~~----~ 550 (587)
+.|+.|++||+.+.... .....+.+| ...+.+++|+|+ +++|++|+.||.|++||+.+++ .
T Consensus 248 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 325 (366)
T 3k26_A 248 SCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAK 325 (366)
T ss_dssp CSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCE
T ss_pred ecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcccc
Confidence 99999999998765331 112334444 455778999999 9999999999999999999875 4
Q ss_pred EEEEecC--CCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 551 FRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 551 ~~~l~~h--~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...+.+| ...|++++|+| ++.+|++++.||.|+|||
T Consensus 326 ~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iwd 363 (366)
T 3k26_A 326 CTTLTHHKCGAAIRQTSFSR-DSSILIAVCDDASIWRWD 363 (366)
T ss_dssp EEEECCTTCCSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred ceEEcccccCCceEEEEeCC-CCCeEEEEeCCCEEEEEE
Confidence 4578887 78999999999 788999999999999997
No 36
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.4e-37 Score=319.60 Aligned_cols=287 Identities=13% Similarity=0.163 Sum_probs=225.1
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
.+..|.+.|++++|+|+ +.+|++|+.|+.|+||++ ..+ +++..+.+|...|.+++|+|++++|++++.|+.|+|||
T Consensus 6 ~~~~~~~~v~~~~~s~~-g~~l~~~~~d~~i~iw~~-~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 6 VLHILPKPSYEHAFNSQ-RTEFVTTTATNQVELYEQ-DGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEEECSSCCSCCEECSS-SSEEECCCSSSCBCEEEE-ETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC-
T ss_pred eEecCCCcEEEEEECCC-CCEEEEecCCCEEEEEEc-cCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 34457789999999998 899999999999999999 555 78888999999999999999999999999999999999
Q ss_pred CCCCc---EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc---EEEEEcc-CCCCeeEEEEecCCCE
Q 007855 369 TETGQ---VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE---ITQEYDQ-HLGAVNTITFVDNNRR 440 (587)
Q Consensus 369 ~~t~~---~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~---~~~~~~~-h~~~I~~i~~sp~~~~ 440 (587)
+.+++ ....+. ....+.++.|++++ .+|++|+.|+.|++||+++++ ....+.. |...|++++|+|++++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 160 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNE---DKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL 160 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTS---SCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCC---CEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence 99887 444443 44556677777754 579999999999999999887 4777877 9999999999999999
Q ss_pred EEEEECCCCEEEEECCC------------------CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 441 FVTSSDDKSLRVWEFGI------------------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~------------------~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
|++++.|+.|++||+.. ...+..+ .|...|.+++|+|++++|++++.|+.|++||+.++.
T Consensus 161 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~ 238 (377)
T 3dwl_C 161 LAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE 238 (377)
T ss_dssp EEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred EEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence 99999999999999852 3344444 688899999999999999999999999999998775
Q ss_pred eec-ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe------------------------------eE
Q 007855 503 QLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK------------------------------VF 551 (587)
Q Consensus 503 ~~~-~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~------------------------------~~ 551 (587)
... ....+.+| ...+.+++|+|+|++|++|+.++.+ +|+..... .+
T Consensus 239 ~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (377)
T 3dwl_C 239 QPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPV 315 (377)
T ss_dssp SCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC----
T ss_pred CcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccccccccccccccc
Confidence 411 13445555 4678899999999999999877666 66654111 00
Q ss_pred ------EEE----------------ecCCCCEEEEEEcCCCCC---EEEEEECCCcEEEcC
Q 007855 552 ------RTL----------------KCHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 587 (587)
Q Consensus 552 ------~~l----------------~~h~~~V~~v~~sp~~~~---~l~s~g~DG~I~iWD 587 (587)
..+ ..|.+.|+++.+.+.++. .|+|||.||.|+|||
T Consensus 316 ~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd 376 (377)
T 3dwl_C 316 SFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT 376 (377)
T ss_dssp ---------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred ccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence 111 129999999998774444 699999999999998
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=8.2e-37 Score=326.07 Aligned_cols=295 Identities=13% Similarity=0.190 Sum_probs=229.2
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEec-CCCeEEEEeCCC
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCN-DGTKFLTASYDK 362 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg 362 (587)
.++.....+|...|+||+|+|.++.+||+|+.||+|+|||+ ..+ ..+..+.+|...|++|+|+| ++.+|++|+.||
T Consensus 109 ~~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~-~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~ 187 (435)
T 4e54_B 109 YRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNF-GIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG 187 (435)
T ss_dssp TTSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECS-SCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS
T ss_pred eeecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEEC-CCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC
Confidence 45566778999999999999976889999999999999999 444 34445678999999999998 789999999999
Q ss_pred eEEEEECCCCcEEEEeecCC---cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC
Q 007855 363 NIKYWDTETGQVIRTFSTGK---IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR 439 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~ 439 (587)
+|+|||++++.......... ...++.+++++ .+|++|+.||.|++||++. +.+..+.+|...|++++|+|++.
T Consensus 188 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~ 263 (435)
T 4e54_B 188 TTRLQDFKGNILRVFASSDTINIWFCSLDVSASS---RMVVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCD 263 (435)
T ss_dssp CEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT---TEEEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCS
T ss_pred EEEEeeccCCceeEEeccCCCCccEEEEEECCCC---CEEEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCc
Confidence 99999998765544333222 23456777654 6899999999999999975 45667889999999999999876
Q ss_pred -EEEEEECCCCEEEEECCCCeEEEEe--ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecc-ccc
Q 007855 440 -RFVTSSDDKSLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIV 515 (587)
Q Consensus 440 -~l~s~s~Dg~I~iwd~~~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~ 515 (587)
+|++++.|+.|+|||++.......+ ...|...|.+++|+|++.+|++++.|+.|+|||+.++........... +..
T Consensus 264 ~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~ 343 (435)
T 4e54_B 264 WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQ 343 (435)
T ss_dssp SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCS
T ss_pred eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccc
Confidence 7889999999999999876543322 235788999999999999999999999999999987654432211110 101
Q ss_pred ccceEEEEEcCCCCEEEEEc------------CCCcEEEEeCCCCeeEEEEe-cCCCCEEEE-EEcCCCCCEEEEEECCC
Q 007855 516 AGYACQVNFSPDGRFVMSGD------------GEGKCWFWDWKSCKVFRTLK-CHEGVCIGC-EWHPLEQSKVATCGWDG 581 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs------------~dG~I~vwd~~t~~~~~~l~-~h~~~V~~v-~~sp~~~~~l~s~g~DG 581 (587)
...+..+.|+|++.+++++. .++.|++||..+++++..+. +|...|.++ +|+| ++.+|++|+ |+
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fsp-dg~~lasg~-d~ 421 (435)
T 4e54_B 344 HLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNP-MGDTLASAM-GY 421 (435)
T ss_dssp SSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECT-TSSCEEEEC-SS
T ss_pred cceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECC-CCCEEEEEc-CC
Confidence 11223356666666666553 33579999999999988875 677888887 6999 677888765 88
Q ss_pred cEEEcC
Q 007855 582 LIKYWD 587 (587)
Q Consensus 582 ~I~iWD 587 (587)
.|+|||
T Consensus 422 ~i~iW~ 427 (435)
T 4e54_B 422 HILIWS 427 (435)
T ss_dssp EEEECC
T ss_pred cEEEEE
Confidence 999997
No 38
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.5e-35 Score=300.50 Aligned_cols=285 Identities=22% Similarity=0.321 Sum_probs=243.8
Q ss_pred ccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 237 DKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
..++...+......+.+.+.++...|..+|.|-.. ..+.+.++..|...|.+++|+|+ +.+|++|+
T Consensus 51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~-------------~~~~~~~~~~~~~~v~~~~~s~~-~~~l~s~~ 116 (340)
T 1got_B 51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSY-------------TTNKVHAIPLRSSWVMTCAYAPS-GNYVACGG 116 (340)
T ss_dssp ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT-------------TCCEEEEEECSSSCEEEEEECTT-SSEEEEEE
T ss_pred ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECC-------------CCCcceEeecCCccEEEEEECCC-CCEEEEEe
Confidence 34555556566666777788888899999998532 23567888999999999999999 89999999
Q ss_pred CCCeEEEEecCCCC---eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccC
Q 007855 317 MDTKVKIWDVFNSG---KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPD 392 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~ 392 (587)
.|+.|+||++.... .....+.+|...|.++.|++++. |++++.|++|++||+.+++++..+..+ ..+.++.++|+
T Consensus 117 ~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~ 195 (340)
T 1got_B 117 LDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPD 195 (340)
T ss_dssp TTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCC
Confidence 99999999994322 46677889999999999998775 899999999999999999999888754 34567777775
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec-CCCcc
Q 007855 393 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHS 471 (587)
Q Consensus 393 ~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~ 471 (587)
+ .+|++|+.|+.|++||++++..+..+.+|...|++++|+|++++|++++.|++|++||++....+..+.. .+...
T Consensus 196 ~---~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~ 272 (340)
T 1got_B 196 T---RLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272 (340)
T ss_dssp S---SEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred C---CEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccc
Confidence 4 5899999999999999999999999999999999999999999999999999999999999887766642 23357
Q ss_pred eeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 472 MPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
|.+++|+|++.+|++|+.|+.|++||+.+...+ ..+.+| ...|.+++|+|+|.+|++|+.||.|+|||
T Consensus 273 v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA---GVLAGH--DNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred eEEEEECCCCCEEEEECCCCeEEEEEcccCcEe---eEeecC--CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999999999999999999999999876544 445666 56799999999999999999999999997
No 39
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=4.2e-35 Score=302.28 Aligned_cols=301 Identities=17% Similarity=0.267 Sum_probs=252.0
Q ss_pred cccCCCceEEEEcCCCCCeEEEEEccCC--CcEEEEEeCCCeEEEEecCCCCeee-EEEcccCCceeeEEEecCCCeEEE
Q 007855 281 HCYIPKRLVHTWSGHTKGVSAIRFFPKY--GHLILSAGMDTKVKIWDVFNSGKCM-RTYMGHSKAVRDISFCNDGTKFLT 357 (587)
Q Consensus 281 ~~~~p~~~i~tl~gH~~~V~~l~~sp~~--g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~~~V~~l~fs~dg~~l~s 357 (587)
....|.+.+..+.+|.+.|++|+|+|+. +.+|++|+.||.|+||++...+..+ ..+.+|...|++++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 3456778889999999999999999995 6999999999999999995425444 788899999999999999999999
Q ss_pred EeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC
Q 007855 358 ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
++.||.|++||+.+++.+........+.++.|.+.. .+.+|++++.||.|++||+++++.+..+..+. .+.++.+.
T Consensus 104 ~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~-- 179 (368)
T 3mmy_A 104 ASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAP-NYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVI-- 179 (368)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECS-SCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEE--
T ss_pred EcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCC-CCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEec--
Confidence 999999999999999998887777778888885433 34689999999999999999999988887664 66666666
Q ss_pred CCEEEEEECCCCEEEEECCCCeE-EEEeecCCCcceeEEEEeCCCCE----EEEEECCCeEEEEEcCCceeecccceecc
Q 007855 438 NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPNTNW----LAAQSLDNQILIYSTRERFQLNKKKRFAG 512 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp~g~~----l~~~s~dg~I~iwd~~~~~~~~~~~~~~~ 512 (587)
...+++++.++.+++|+++.... ...+.......+.++++.++... +++++.|+.|++|++...........+.+
T Consensus 180 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~ 259 (368)
T 3mmy_A 180 YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKC 259 (368)
T ss_dssp TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEEC
T ss_pred CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeee
Confidence 45899999999999999987543 34444455667777777776654 99999999999999987644334445555
Q ss_pred cccc----------cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 513 HIVA----------GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 513 ~~~~----------~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
|... ..+.+++|+|++++|++|+.||.|++||+.+++++..+..|...|++++|+| ++.+|++++.|+.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~s~d~~ 338 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNH-NGNIFAYASSYDW 338 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECT-TSSCEEEEECCCS
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECC-CCCeEEEEecccc
Confidence 5321 1689999999999999999999999999999999999999999999999999 7789999999886
Q ss_pred EEEc
Q 007855 583 IKYW 586 (587)
Q Consensus 583 I~iW 586 (587)
.+.|
T Consensus 339 ~~~~ 342 (368)
T 3mmy_A 339 SKGH 342 (368)
T ss_dssp TTCG
T ss_pred cccc
Confidence 5444
No 40
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-36 Score=320.65 Aligned_cols=308 Identities=13% Similarity=0.203 Sum_probs=252.6
Q ss_pred cccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC---CCeeeEEE
Q 007855 260 EKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN---SGKCMRTY 336 (587)
Q Consensus 260 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---~~~~~~~~ 336 (587)
..|..++.|........ +++..+ .|...|++++|+|+ +.+|++|+.||.|+||++.. ....+..+
T Consensus 42 ~~d~~v~iw~~~~~~~~----------~~~~~~-~~~~~v~~~~~s~~-~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~ 109 (416)
T 2pm9_A 42 STDSSLELWSLLAADSE----------KPIASL-QVDSKFNDLDWSHN-NKIIAGALDNGSLELYSTNEANNAINSMARF 109 (416)
T ss_dssp CCCCCCEEEESSSGGGC----------SCSCCC-CCSSCEEEEEECSS-SSCEEEEESSSCEEEECCSSTTSCCCEEEEC
T ss_pred CCCCeEEEEEccCCCCC----------cEEEEE-ecCCceEEEEECCC-CCeEEEEccCCeEEEeecccccccccchhhc
Confidence 67888898866543211 112222 58899999999999 89999999999999999943 14588889
Q ss_pred cccCCceeeEEEecC-CCeEEEEeCCCeEEEEECCCCc------EEEEe----ecCCcceEEEEccCCCCCcEEEEEeCC
Q 007855 337 MGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQ------VIRTF----STGKIPYVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 337 ~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~------~i~~~----~~~~~~~~~~~~~~~~~~~~l~sg~~d 405 (587)
.+|...|++++|+|+ +.+|++++.|+.|++||+.+++ ....+ .....+.++.|+++. +.+|++++.|
T Consensus 110 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~d 187 (416)
T 2pm9_A 110 SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSL--AHVFASAGSS 187 (416)
T ss_dssp CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSC--TTEEEEESSS
T ss_pred cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCC--CcEEEEEcCC
Confidence 999999999999998 8999999999999999999886 33332 233456678887753 3689999999
Q ss_pred CcEEEEeCCCCcEEEEEccC------CCCeeEEEEecCC-CEEEEEECCC---CEEEEECCCC-eEEEEeecCCCcceeE
Q 007855 406 KKIVQWDMNTKEITQEYDQH------LGAVNTITFVDNN-RRFVTSSDDK---SLRVWEFGIP-VVIKYISEPHMHSMPS 474 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h------~~~I~~i~~sp~~-~~l~s~s~Dg---~I~iwd~~~~-~~~~~~~~~~~~~i~~ 474 (587)
+.|++||+++++.+..+..| ...|.+++|+|++ .+|++++.|+ .|++||++.. ..+..+...|...|.+
T Consensus 188 g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~ 267 (416)
T 2pm9_A 188 NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILS 267 (416)
T ss_dssp SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEE
T ss_pred CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeE
Confidence 99999999999999988876 7899999999997 6899999999 9999999986 4444443268889999
Q ss_pred EEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC-CEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 475 ISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG-RFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 475 i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
++|+| ++.+|++++.|+.|++||+.++..+ ..+.+| ...+.+++|+|++ .+|++++.||.|++|++.++....
T Consensus 268 ~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~---~~~~~~--~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 268 LDWCHQDEHLLLSSGRDNTVLLWNPESAEQL---SQFPAR--GNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp EEECSSCSSCEEEEESSSEEEEECSSSCCEE---EEEECS--SSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEEeeCCCCccc---eeecCC--CCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 99999 9999999999999999999887554 334455 4667889999999 899999999999999998765322
Q ss_pred EEe-----------------------------------cCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 553 TLK-----------------------------------CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 553 ~l~-----------------------------------~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
... .|..++.+++|+| ++.+|++++.||.|+|||
T Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~la~~~~d~~v~~w~ 411 (416)
T 2pm9_A 343 DEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF-GGKLVQITPDGKGVSITN 411 (416)
T ss_dssp CC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET-TTEEECBCTTSSCBCCBC
T ss_pred ccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee-CCeEEEEeCCCCeEEEEE
Confidence 211 1567788999999 788999999999999997
No 41
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-34 Score=299.60 Aligned_cols=288 Identities=22% Similarity=0.322 Sum_probs=246.5
Q ss_pred ccCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 237 DKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
..++...+......+...+.++...|..+|.|-.. +.+..+.+..|...|.+++|+|+ +.+|++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~-------------~~~~~~~~~~~~~~v~~~~~sp~-g~~lasg~ 125 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSF-------------TTNKEHAVTMPCTWVMACAYAPS-GCAIACGG 125 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-------------TCCEEEEEECSSSCCCEEEECTT-SSEEEEES
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECC-------------CCCcceEEecCCCCEEEEEECCC-CCEEEEee
Confidence 34666666666667777788889999999999543 34567788899999999999999 99999999
Q ss_pred CCCeEEEEecCCC-----CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEc
Q 007855 317 MDTKVKIWDVFNS-----GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLN 390 (587)
Q Consensus 317 ~Dg~I~iWd~~~~-----~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~ 390 (587)
.|+.|++|++... ......+.+|...|.+++|++++..|++++.|++|++||+++++++..+..+. .+.++.+.
T Consensus 126 ~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~ 205 (354)
T 2pbi_B 126 LDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLA 205 (354)
T ss_dssp TTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred CCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEE
Confidence 9999999998322 13556778899999999999999999999999999999999999999987554 45567777
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec-CCC
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHM 469 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~ 469 (587)
+.. .+++|++|+.||.|++||+++++.+..+..|...|++++|+|++.+|++++.|++|++||++....+..+.. .+.
T Consensus 206 ~~~-~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~ 284 (354)
T 2pbi_B 206 PSE-TGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESII 284 (354)
T ss_dssp CCS-SCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCC
T ss_pred eCC-CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcc
Confidence 753 246899999999999999999999999999999999999999999999999999999999999877665543 234
Q ss_pred cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
..+.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||.|+||+
T Consensus 285 ~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~---~~l~~h--~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 285 FGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRV---SILFGH--ENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEE---EEECCC--SSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cceeEEEEeCCCCEEEEEECCCcEEEEECCCCceE---EEEECC--CCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 57899999999999999999999999999876554 345566 57799999999999999999999999996
No 42
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=1.7e-35 Score=310.21 Aligned_cols=288 Identities=20% Similarity=0.359 Sum_probs=234.0
Q ss_pred CccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEe
Q 007855 246 GEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWD 325 (587)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd 325 (587)
.....+...+.++...|..+|.|-. ...+.++++.+|...|.+++|+|+ +.+|++|+.|+.|+||+
T Consensus 71 ~~~~sp~~~~l~s~s~D~~v~iWd~-------------~~~~~~~~~~~h~~~v~~~~~s~~-g~~las~~~d~~v~iw~ 136 (380)
T 3iz6_a 71 SLDWTPEKNWIVSASQDGRLIVWNA-------------LTSQKTHAIKLHCPWVMECAFAPN-GQSVACGGLDSACSIFN 136 (380)
T ss_dssp EEEECTTSSCEEEEETTSEEEEEET-------------TTTEEEEEEECCCTTCCCCEECTT-SSEEEECCSSSCCEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEC-------------CCCccceEEecCCCCEEEEEECCC-CCEEEEeeCCCcEEEEE
Confidence 3334455556666777777777743 345678899999999999999999 99999999999999999
Q ss_pred cCCC------CeeeEEEcccCCceeeEEEecC-CCeEEEEeCCCeEEEEECCCCcEEEEee----cCCcceEEEEccCCC
Q 007855 326 VFNS------GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVVKLNPDDD 394 (587)
Q Consensus 326 ~~~~------~~~~~~~~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~----~~~~~~~~~~~~~~~ 394 (587)
+... ......+.+|...|.++.|+|+ +..|++|+.|++|++||+.+++.+..+. .++...+..+.....
T Consensus 137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 216 (380)
T 3iz6_a 137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL 216 (380)
T ss_dssp CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS
T ss_pred CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC
Confidence 8321 1245668899999999999996 5679999999999999999999988773 223333444333333
Q ss_pred CCcEEEEEeCCCcEEEEeCC-CCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC-----
Q 007855 395 KQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH----- 468 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~-t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~----- 468 (587)
.+++|++|+.|+.|++||++ .+..+..+.+|.+.|++++|+|++.+|++++.|++|++||++++..+..+....
T Consensus 217 ~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~ 296 (380)
T 3iz6_a 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDN 296 (380)
T ss_dssp SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCC
T ss_pred CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccc
Confidence 45799999999999999998 457888999999999999999999999999999999999999998887764321
Q ss_pred -CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee-cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 469 -MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 469 -~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
...+.+++|+|+|.+|++|+.||.|++||+..+..+...... .+| ...|.+++|+|+|.+|++|+.||.|+||++.
T Consensus 297 ~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 297 ELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH--EGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp SSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSC--CCCCCEEEECSSSSEEEEECTTSCEEEEECC
T ss_pred ccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCC--CCceEEEEECCCCCEEEEeeCCCCEEEEecC
Confidence 234899999999999999999999999999876555433222 345 5678999999999999999999999999987
Q ss_pred CCe
Q 007855 547 SCK 549 (587)
Q Consensus 547 t~~ 549 (587)
..+
T Consensus 375 ~~~ 377 (380)
T 3iz6_a 375 GHR 377 (380)
T ss_dssp SSS
T ss_pred CCc
Confidence 654
No 43
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=9.3e-35 Score=300.77 Aligned_cols=287 Identities=16% Similarity=0.267 Sum_probs=221.3
Q ss_pred cccccceEeecccccccceeeeeCCCCcccCCCcccCC-CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEec
Q 007855 248 HVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIP-KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDV 326 (587)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p-~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~ 326 (587)
...+...+..... |..+|.|...... .......+ .........|..+|++|+|+|+ + .|++|+.||+|+|||+
T Consensus 37 ~fs~dG~~l~~~s-d~~~r~Wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~-~l~~~s~dg~v~lWd~ 110 (344)
T 4gqb_B 37 RYRSDGALLLGAS-SLSGRCWAGSLWL---FKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-R-GILVASDSGAVELWEL 110 (344)
T ss_dssp EECTTSCEEEEEE-CCSSSCCCEEEEE---ESSGGGTTCGGGCSEEEEESSCEEEEEEETT-T-EEEEEETTSEEEEEEE
T ss_pred EECCCCCEEEEEe-CCceEEeeceeee---eccccccCCcceeeeeeccCCCEEEEEEeCC-C-eEEEEECCCEEEEEec
Confidence 3445555655554 7788888421100 00000111 1122233457788999999998 4 6889999999999999
Q ss_pred CCCCeeeE----EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEE
Q 007855 327 FNSGKCMR----TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 327 ~~~~~~~~----~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~s 401 (587)
.+++.+. .+.+|...|++|+|+|+|++|++|+.|++|+|||+.+++++..+..+ ..+.++.|++++. .+|++
T Consensus 111 -~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~--~~l~s 187 (344)
T 4gqb_B 111 -DENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD--SVFLS 187 (344)
T ss_dssp -CTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCT--TEEEE
T ss_pred -cCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCC--Cceee
Confidence 5555443 34589999999999999999999999999999999999999998754 4456777777543 68999
Q ss_pred EeCCCcEEEEeCCCCcEEEEEc--cCCCCeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEe
Q 007855 402 GMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLH 478 (587)
Q Consensus 402 g~~dg~I~iwD~~t~~~~~~~~--~h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~s 478 (587)
|+.|+.|++||+++++....+. .|...+++++|+|+ +++|++|+.||.|+|||++++.++..+. .|...|.+++|+
T Consensus 188 ~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fs 266 (344)
T 4gqb_B 188 CSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFS 266 (344)
T ss_dssp EETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEEC
T ss_pred eccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEc
Confidence 9999999999999998887764 45667999999984 5688999999999999999988877765 588999999999
Q ss_pred CCC-CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCee
Q 007855 479 PNT-NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 479 p~g-~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~t~~~ 550 (587)
|++ .+|++++.|+.|+|||+.++..+ .+.+| ...|.+++|+|++. +|++|+.||.|++|++.+..+
T Consensus 267 p~g~~~lasgs~D~~i~vwd~~~~~~~----~~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 267 PHSVPFLASLSEDCSLAVLDSSLSELF----RSQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp SSSSCCEEEEETTSCEEEECTTCCEEE----EECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred cCCCeEEEEEeCCCeEEEEECCCCcEE----EEcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence 997 68999999999999999877543 34566 57799999999986 567899999999999987543
No 44
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=5.3e-34 Score=288.74 Aligned_cols=290 Identities=16% Similarity=0.303 Sum_probs=235.1
Q ss_pred cCCCceEEEEcC--CCC--CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc--ccCCceeeEEEecCCCeEE
Q 007855 283 YIPKRLVHTWSG--HTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM--GHSKAVRDISFCNDGTKFL 356 (587)
Q Consensus 283 ~~p~~~i~tl~g--H~~--~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fs~dg~~l~ 356 (587)
++|..+.+.|.. ... .+++|+||++ + +|++| .|++|+|||+ .++++++.+. +|...|++++|+|++++|+
T Consensus 8 ~~p~~p~rvldap~~~~d~y~~~l~WS~~-~-~lAvg-~D~tV~iWd~-~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~ 83 (318)
T 4ggc_A 8 YIPSLPDRILDAPEIRNDYYLNLVDWSSG-N-VLAVA-LDNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLA 83 (318)
T ss_dssp CCCSSCSEEEECTTCCCCTTCBCEEECTT-S-EEEEE-ETTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEE
T ss_pred ccCCCCCEEeeCCCCcccccceEEEECCC-C-EEEEE-eCCEEEEEEC-CCCCEEEEEEecCCCCeEEEEEECCCCCEEE
Confidence 455555555542 222 3578999987 4 67665 5999999999 7888887765 6788899999999999999
Q ss_pred EEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEe
Q 007855 357 TASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 357 s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~s 435 (587)
+|+.||+|+|||+++++++..+..+.. .+..+.+.+ .++++|+.++.+++|+.... ..+..+.+|...+.++.+.
T Consensus 84 sgs~Dg~v~iw~~~~~~~~~~~~~h~~-~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (318)
T 4ggc_A 84 VGTSSAEVQLWDVQQQKRLRNMTSHSA-RVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159 (318)
T ss_dssp EEETTSEEEEEETTTTEEEEEEECCSS-CEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCcEEEeecCCceeEEEecCccc-eEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEc
Confidence 999999999999999999998876543 344555543 58999999999999999876 5567788999999999999
Q ss_pred cCCCEEEEEECCCCEEEEECCCCeEE---EEeecCCCcceeEEEEeCCCCEE---EEEECCCeEEEEEcCCceeecccce
Q 007855 436 DNNRRFVTSSDDKSLRVWEFGIPVVI---KYISEPHMHSMPSISLHPNTNWL---AAQSLDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 436 p~~~~l~s~s~Dg~I~iwd~~~~~~~---~~~~~~~~~~i~~i~~sp~g~~l---~~~s~dg~I~iwd~~~~~~~~~~~~ 509 (587)
+++++|++++.|+.|++||++++... ......+...|.++.++|.+..+ ++++.++.|++|+..........
T Consensus 160 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~-- 237 (318)
T 4ggc_A 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV-- 237 (318)
T ss_dssp TTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--
T ss_pred CCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--
Confidence 99999999999999999999865321 12223567789999999976533 45567899999998776443221
Q ss_pred ecccccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs--~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.....+..+.|+|++..+++++ .||.|+|||+.+++++..+.+|.+.|++++|+| ++.+|+|||.||+|+|||
T Consensus 238 ----~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~~v~iWd 312 (318)
T 4ggc_A 238 ----DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 312 (318)
T ss_dssp ----ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEEC
T ss_pred ----cceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEE
Confidence 1235577899999999887654 799999999999999999999999999999999 778999999999999997
No 45
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.6e-34 Score=331.44 Aligned_cols=292 Identities=19% Similarity=0.333 Sum_probs=258.4
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
.++.+++.+|.+.|++++|+|+ +.+|++|+.||.|+|||+ .++..+..+.+|...|++++|+|++++|++++.||.|+
T Consensus 3 l~~~~~~~~h~~~v~~i~~sp~-~~~la~~~~~g~v~iwd~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 80 (814)
T 3mkq_A 3 LDIKKTFSNRSDRVKGIDFHPT-EPWVLTTLYSGRVEIWNY-ETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIR 80 (814)
T ss_dssp CCCEEEEEEECSCEEEEEECSS-SSEEEEEETTSEEEEEET-TTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEE
T ss_pred cccceeeecCCCceEEEEECCC-CCEEEEEeCCCEEEEEEC-CCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEE
Confidence 3567899999999999999999 999999999999999999 78999999999999999999999999999999999999
Q ss_pred EEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEec-CCCEEE
Q 007855 366 YWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVD-NNRRFV 442 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp-~~~~l~ 442 (587)
|||+.+++.+..+..+ ..+.+++|++++ .+|++++.||.|++||+.++ .....+..|...|.+++|+| ++..|+
T Consensus 81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~ 157 (814)
T 3mkq_A 81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTK---PYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFA 157 (814)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEECSSS---SEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEE
T ss_pred EEECCCCcEEEEEecCCCCEEEEEEeCCC---CEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEE
Confidence 9999999999888744 456678888765 47999999999999999987 77788889999999999999 889999
Q ss_pred EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC--CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP--NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp--~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
+++.||.|++||+........+...+...+.+++|+| ++.+|++++.||.|++||+.++..+ ..+.+| ...+.
T Consensus 158 ~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~---~~~~~~--~~~v~ 232 (814)
T 3mkq_A 158 SGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV---ATLEGH--MSNVS 232 (814)
T ss_dssp EEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE---EEEECC--SSCEE
T ss_pred EEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE---EEEcCC--CCCEE
Confidence 9999999999999888777777666668999999999 9999999999999999999887654 334445 46788
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+++|+|++.+|++++.||.|++||+.+++.+..+..|...|.+++|+|++...+++++.++.+.+|+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLS 299 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEE
Confidence 9999999999999999999999999999999999999999999999995555445555566677663
No 46
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=5.4e-34 Score=315.59 Aligned_cols=306 Identities=18% Similarity=0.296 Sum_probs=252.4
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCC---CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK 331 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~---~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~ 331 (587)
+......|..++.|- ..+.+++.++.+|.. .|++++|+|+++.+|++++.||.|++||+ .+++
T Consensus 175 ~l~~~~~d~~v~vwd-------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~ 240 (615)
T 1pgu_A 175 RSMTVGDDGSVVFYQ-------------GPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG-KSGE 240 (615)
T ss_dssp EEEEEETTTEEEEEE-------------TTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEET-TTCC
T ss_pred EEEEEeCCCcEEEEe-------------CCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC-CCCC
Confidence 456666777777774 234567889999999 99999999986789999999999999999 7888
Q ss_pred eeEEE-c---ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-----CcceEEEEccCCCCCcEEEEE
Q 007855 332 CMRTY-M---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-----KIPYVVKLNPDDDKQNILLAG 402 (587)
Q Consensus 332 ~~~~~-~---~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-----~~~~~~~~~~~~~~~~~l~sg 402 (587)
.+..+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++.+..+... .....+.+. .+.+++++
T Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~ 315 (615)
T 1pgu_A 241 FLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT----GNGRIISL 315 (615)
T ss_dssp EEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE----ETTEEEEE
T ss_pred EeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC----CCCeEEEE
Confidence 88888 6 899999999999 9999999999999999999999999988766 223344442 34689999
Q ss_pred eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC---------------------------------------------
Q 007855 403 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN--------------------------------------------- 437 (587)
Q Consensus 403 ~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~--------------------------------------------- 437 (587)
+.++.|++||+.+++.+..+..|...|++++| |+
T Consensus 316 ~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~ 394 (615)
T 1pgu_A 316 SLDGTLNFYELGHDEVLKTISGHNKGITALTV-NPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISWDDT 394 (615)
T ss_dssp ETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEETTTE
T ss_pred ECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeCCCC
Confidence 99999999999988888888777666666555 32
Q ss_pred -------------------------------------------------------------CCEEEEEEC-CCCEEEEEC
Q 007855 438 -------------------------------------------------------------NRRFVTSSD-DKSLRVWEF 455 (587)
Q Consensus 438 -------------------------------------------------------------~~~l~s~s~-Dg~I~iwd~ 455 (587)
+++|++++. |+.|++||+
T Consensus 395 i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 395 LKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp EEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEET
T ss_pred EEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEeecCCCeEEEEEC
Confidence 344555555 666666666
Q ss_pred CCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecc-cccccceEEEEEcC--------
Q 007855 456 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG-HIVAGYACQVNFSP-------- 526 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~i~~l~~sp-------- 526 (587)
............|...|.+++|+|++++|++++.|+.|++|++.++..+.. +.+ | ...|.+++|+|
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~---~~~~h--~~~v~~~~~sp~~~~~~~~ 549 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTS---RWAFR--TSKINAISWKPAEKGANEE 549 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEC---CSCCC--SSCEEEEEECCCC------
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeE---eecCC--CCceeEEEEcCcccccccc
Confidence 654443233345788999999999999999999999999999988766533 333 4 57799999999
Q ss_pred --CCCEEEEEcCCCcEEEEeCCCC-eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 527 --DGRFVMSGDGEGKCWFWDWKSC-KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 527 --dg~~L~sgs~dG~I~vwd~~t~-~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++++|++|+.||.|++||+.++ +++..+.+|...|++++|+| ++. |++++.||.|++||
T Consensus 550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~-~~~-l~s~~~d~~v~iw~ 611 (615)
T 1pgu_A 550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PST-LVSSGADACIKRWN 611 (615)
T ss_dssp CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEE-TTE-EEEEETTSCEEEEE
T ss_pred ccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcC-CCC-eEEecCCceEEEEe
Confidence 9999999999999999999998 88899999999999999999 566 99999999999996
No 47
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-34 Score=302.94 Aligned_cols=281 Identities=15% Similarity=0.297 Sum_probs=235.5
Q ss_pred EEEcCCCCCe--EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-cCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 290 HTWSGHTKGV--SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 290 ~tl~gH~~~V--~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
....+|...+ .++.|++ ..+++++.|+.|+||++ .++.....+.. |...|.+++|+|++.+|++|+.||.|++
T Consensus 85 ~~~~~~~~~~~~~~~~~s~---~~l~~~~~d~~v~lw~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 160 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSN---LNVVAVALERNVYVWNA-DSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDI 160 (401)
T ss_dssp EECTTCCCCTTCBCEEECT---TSEEEEEETTEEEEEET-TTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred eeCCCCcCCceEEEEeecC---CCEEEEECCCeEEEeeC-CCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEE
Confidence 3445777664 4566654 45778889999999999 67777766665 8999999999999999999999999999
Q ss_pred EECCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCC-CCcEEEEEccCCCCeeEEEEecCCCEEEEE
Q 007855 367 WDTETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQEYDQHLGAVNTITFVDNNRRFVTS 444 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~ 444 (587)
||+.+++.+..+..+. .+.++.+ + +++|++|+.||.|++||++ ....+..+..|.+.|.+++|+|++.+|+++
T Consensus 161 wd~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 235 (401)
T 4aez_A 161 YDVESQTKLRTMAGHQARVGCLSW--N---RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASG 235 (401)
T ss_dssp EETTTCCEEEEECCCSSCEEEEEE--E---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred EECcCCeEEEEecCCCCceEEEEE--C---CCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEE
Confidence 9999999998886443 3345555 2 2589999999999999999 567788889999999999999999999999
Q ss_pred ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCC-CEEEEEE--CCCeEEEEEcCCceeecccceecccccccceEE
Q 007855 445 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNT-NWLAAQS--LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g-~~l~~~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
+.|+.|++||++....+..+. .|...|.+++|+|++ .++++++ .|+.|++||+.++..+... . ....+.+
T Consensus 236 ~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~---~---~~~~v~~ 308 (401)
T 4aez_A 236 GNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV---D---AGSQVTS 308 (401)
T ss_dssp ETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE---E---CSSCEEE
T ss_pred eCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE---e---CCCcEEE
Confidence 999999999999988877664 588899999999976 4556654 6999999999887655333 2 1356889
Q ss_pred EEEcCCCCEEEE--EcCCCcEEEEeCCCCeeEE--EEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 522 VNFSPDGRFVMS--GDGEGKCWFWDWKSCKVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 522 l~~spdg~~L~s--gs~dG~I~vwd~~t~~~~~--~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++|+|++++|++ |+.+|.|++||+.+++... .+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 309 ~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~-dg~~l~s~~~dg~i~iw~ 377 (401)
T 4aez_A 309 LIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSP-DGRILSTAASDENLKFWR 377 (401)
T ss_dssp EEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECT-TSSEEEEECTTSEEEEEE
T ss_pred EEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECC-CCCEEEEEeCCCcEEEEE
Confidence 999999999998 5589999999999976544 4678999999999999 788999999999999996
No 48
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=6e-34 Score=302.37 Aligned_cols=275 Identities=17% Similarity=0.315 Sum_probs=231.1
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc--ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
-++.|+|+++ ++|++|. |++|+|||+ .+++++..+. +|...|++|+|+|+|++|++|+.||.|+|||+.+++++
T Consensus 107 y~~~l~wS~~--n~lAvgl-d~tV~lWd~-~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~ 182 (420)
T 4gga_A 107 YLNLVDWSSG--NVLAVAL-DNSVYLWSA-SSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRL 182 (420)
T ss_dssp TCBCEEECTT--SEEEEEE-TTEEEEEET-TTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred cceeEEECCC--CEEEEEe-CCEEEEEEC-CCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEE
Confidence 4788999976 5777665 999999999 7888777664 67888999999999999999999999999999999999
Q ss_pred EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEE
Q 007855 376 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd 454 (587)
..+..+. ..+.++.+++ .+|++|+.|+.+++||.... ..+..+.+|...+.++.++|++.++++++.|+.|++|+
T Consensus 183 ~~~~~h~-~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 183 RNMTSHS-ARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EEECCCS-SCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEeCCC-CceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEe
Confidence 8886543 3444555543 58999999999999999875 56678889999999999999999999999999999999
Q ss_pred CCCCeEE---EEeecCCCcceeEEEEeCCC-CEEEEE--ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 455 FGIPVVI---KYISEPHMHSMPSISLHPNT-NWLAAQ--SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 455 ~~~~~~~---~~~~~~~~~~i~~i~~sp~g-~~l~~~--s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
...+... ......+...|.+++|+|.+ .+++++ +.|+.|++||+.++...... .. ...++++.|+|++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~---~~---~~~v~~~~~~~~~ 332 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV---DA---HSQVCSILWSPHY 332 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEE---EC---SSCEEEEEEETTT
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceee---cc---ccceeeeeecCCC
Confidence 9765421 12233578899999999965 455554 47999999999987665432 22 3567889999999
Q ss_pred CEEEEEc--CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 529 RFVMSGD--GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 529 ~~L~sgs--~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.|++++ .||.|+|||+.+++++..+.+|.+.|++++|+| ++.+|+|||.||+|+|||
T Consensus 333 ~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~sp-dg~~l~S~s~D~tvriWd 392 (420)
T 4gga_A 333 KELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSP-DGATVASAAADETLRLWR 392 (420)
T ss_dssp TEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECT-TSSCEEEEETTTEEEEEC
T ss_pred CeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcC-CCCEEEEEecCCeEEEEE
Confidence 9988765 789999999999999999999999999999999 778999999999999997
No 49
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=4.4e-34 Score=294.99 Aligned_cols=282 Identities=16% Similarity=0.303 Sum_probs=226.7
Q ss_pred cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe
Q 007855 252 KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK 331 (587)
Q Consensus 252 ~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~ 331 (587)
...+.++...|..+|.|-....... .....+..++.+|...|++++|+|+ +.+|++|+.|++|+|||+ .+++
T Consensus 38 d~~~l~sgs~D~~v~iWd~~~~~~~------~~~~~~~~~l~~h~~~V~~~~~~~~-~~~l~s~s~D~~v~lwd~-~~~~ 109 (343)
T 2xzm_R 38 DSPVLISGSRDKTVMIWKLYEEEQN------GYFGIPHKALTGHNHFVSDLALSQE-NCFAISSSWDKTLRLWDL-RTGT 109 (343)
T ss_dssp CCCEEEEEETTSCEEEEEECSSCCS------SBSEEEEEEECCCSSCEEEEEECSS-TTEEEEEETTSEEEEEET-TSSC
T ss_pred CCCEEEEEcCCCEEEEEECCcCCcc------cccccccchhccCCCceEEEEECCC-CCEEEEEcCCCcEEEEEC-CCCc
Confidence 5667889999999999976543211 0113456789999999999999999 899999999999999999 7888
Q ss_pred eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee----cCCcceEEEEccCCCC-------CcEEE
Q 007855 332 CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVVKLNPDDDK-------QNILL 400 (587)
Q Consensus 332 ~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~----~~~~~~~~~~~~~~~~-------~~~l~ 400 (587)
++..+.+|...|.+++|+|++++|++++.|++|++||+... ...... ......++.+.|.... ..+|+
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~ 188 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFA 188 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEE
Confidence 99999999999999999999999999999999999999844 333332 2334567778776421 25899
Q ss_pred EEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-CeEEEEeecCCCcceeEEEEeC
Q 007855 401 AGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-PVVIKYISEPHMHSMPSISLHP 479 (587)
Q Consensus 401 sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp 479 (587)
+++.|+.|++|| ........+..|...|++++|+|++++|++++.|+.|++||+.. ......+ .+...|.+++|+|
T Consensus 189 s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~--~~~~~v~~v~~sp 265 (343)
T 2xzm_R 189 SVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREF--DAGSTINQIAFNP 265 (343)
T ss_dssp EEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEE--ECSSCEEEEEECS
T ss_pred EEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceee--cCCCcEEEEEECC
Confidence 999999999999 45667778889999999999999999999999999999999943 3333333 2455799999999
Q ss_pred CCCEEEEEECCCeEEEEEcCCceeec--ccc--------eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 480 NTNWLAAQSLDNQILIYSTRERFQLN--KKK--------RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 480 ~g~~l~~~s~dg~I~iwd~~~~~~~~--~~~--------~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
++.+|+++ .|+.|++|++.+..... ... ...+| ...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 266 ~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 266 KLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGK--NPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCS--CCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCC--CCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 99888765 57889999997654332 111 01133 456889999999999999999999999998765
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=8.4e-35 Score=307.31 Aligned_cols=316 Identities=12% Similarity=0.110 Sum_probs=254.9
Q ss_pred cccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC
Q 007855 248 HVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF 327 (587)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~ 327 (587)
...+.+.+.+....|..++.|....... ...+.+| ..+....|+|+ +.+|++|+.||.|+|||+
T Consensus 63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------~~~~~~~-~~~~~~~~~~~-~~~l~~~~~dg~i~iwd~- 126 (420)
T 3vl1_A 63 TFEKVGSHLYKARLDGHDFLFNTIIRDG-------------SKMLKRA-DYTAVDTAKLQ-MRRFILGTTEGDIKVLDS- 126 (420)
T ss_dssp EEEEEETTEEEEEETTEEEEEECCSEET-------------TTTSCSC-CEEEEEEECSS-SCEEEEEETTSCEEEECT-
T ss_pred eeeecCCeEEEEEcCCcEEEEEecccce-------------eeEEecC-CceEEEEEecC-CCEEEEEECCCCEEEEeC-
Confidence 4555566667777888888886543221 1122344 33445567777 899999999999999999
Q ss_pred CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCC
Q 007855 328 NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDK 406 (587)
Q Consensus 328 ~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg 406 (587)
..+.+...+.+|...|++++|+|++++|++++.|+.|++||+.+++.+..+..+ ..+.++.|++++ .+|++++.|+
T Consensus 127 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~---~~l~s~~~d~ 203 (420)
T 3vl1_A 127 NFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG---RNVLSASLDG 203 (420)
T ss_dssp TSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT---TEEEEEETTS
T ss_pred CCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC---CEEEEEcCCC
Confidence 688888888899999999999999999999999999999999999988888744 456678888754 5899999999
Q ss_pred cEEEEeCCCCcEEEEEcc---CCCCeeEEE---------------------EecCCCEEEEEECCCCEEEEECCCCeEEE
Q 007855 407 KIVQWDMNTKEITQEYDQ---HLGAVNTIT---------------------FVDNNRRFVTSSDDKSLRVWEFGIPVVIK 462 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~~~---h~~~I~~i~---------------------~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~ 462 (587)
.|++||+++++.+..+.. |...|.+++ |+|++++|++++.||.|++||+++...+.
T Consensus 204 ~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~ 283 (420)
T 3vl1_A 204 TIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI 283 (420)
T ss_dssp CEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE
T ss_pred cEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE
Confidence 999999999999988875 344455544 56889999999999999999999998888
Q ss_pred EeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007855 463 YISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 541 (587)
Q Consensus 463 ~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~ 541 (587)
.+...|...+.+++|+|++. +|++++.||.|++||++++... ...+.++. ...+.++ +++++++|++++.||.|+
T Consensus 284 ~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~--~~~~~~~~-~~~v~~~-~~~~~~~l~s~~~d~~v~ 359 (420)
T 3vl1_A 284 QLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP--VGEFLINE-GTPINNV-YFAAGALFVSSGFDTSIK 359 (420)
T ss_dssp EECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC--SEEEEEST-TSCEEEE-EEETTEEEEEETTTEEEE
T ss_pred EcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc--hhhhhccC-CCCceEE-EeCCCCEEEEecCCccEE
Confidence 88777889999999999998 9999999999999999876432 23333332 3556666 455788999999999999
Q ss_pred EEeCCCC---------eeEEEEecCCCCEEEEEEcCCCCC---EEEEEECCCcEEEcC
Q 007855 542 FWDWKSC---------KVFRTLKCHEGVCIGCEWHPLEQS---KVATCGWDGLIKYWD 587 (587)
Q Consensus 542 vwd~~t~---------~~~~~l~~h~~~V~~v~~sp~~~~---~l~s~g~DG~I~iWD 587 (587)
+|++... .....+..|.+.|.+++|+| ++. .|+++|.+|.+.+|+
T Consensus 360 iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~g~l~a~g~~g~~~~~~ 416 (420)
T 3vl1_A 360 LDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVS-DDESNGEVLEVGKNNFCALYN 416 (420)
T ss_dssp EEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEEC-CSSSSCEEEEEETTTEEEEEE
T ss_pred EEeccCCCCCccceeccCccEEccCCcceEEEEEcc-CCCCcceEEEEcCCceEEEEe
Confidence 9998763 22344667889999999999 556 788888999999995
No 51
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.6e-33 Score=302.24 Aligned_cols=302 Identities=19% Similarity=0.352 Sum_probs=252.1
Q ss_pred eEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee
Q 007855 254 TFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM 333 (587)
Q Consensus 254 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~ 333 (587)
.+.++...|..+|.|-. ...+++.++.+|.+.|++++|+|+ + +|++|+.||+|++||+ .+++++
T Consensus 133 ~~l~sgs~dg~i~vwd~-------------~~~~~~~~~~~h~~~V~~l~~~~~-~-~l~s~s~dg~i~vwd~-~~~~~~ 196 (464)
T 3v7d_B 133 NYVITGADDKMIRVYDS-------------INKKFLLQLSGHDGGVWALKYAHG-G-ILVSGSTDRTVRVWDI-KKGCCT 196 (464)
T ss_dssp TEEEEEETTSCEEEEET-------------TTTEEEEEECCCSSCEEEEEECST-T-EEEEEETTSCEEEEET-TTTEEE
T ss_pred CEEEEEcCCCcEEEEEC-------------CCCcEEEEEeCCCcCEEEEEEcCC-C-EEEEEeCCCCEEEEEC-CCCcEE
Confidence 45566677777777743 345678899999999999999998 5 9999999999999999 788999
Q ss_pred EEEcccCCceeeEEEec--CCCeEEEEeCCCeEEEEECCCCcEEEE----------------------eecCCcceEEEE
Q 007855 334 RTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRT----------------------FSTGKIPYVVKL 389 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~vWd~~t~~~i~~----------------------~~~~~~~~~~~~ 389 (587)
..+.+|...|.+++|++ ++.+|++++.|+.|++||+.++..... ...++...+.++
T Consensus 197 ~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 276 (464)
T 3v7d_B 197 HVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV 276 (464)
T ss_dssp EEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE
T ss_pred EEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE
Confidence 99999999999999994 778999999999999999988763321 122333444555
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCC
Q 007855 390 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM 469 (587)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~ 469 (587)
.++ +.++++|+.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++.||.|++||++++..+..+. .|.
T Consensus 277 ~~~---~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~ 352 (464)
T 3v7d_B 277 SGH---GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHT 352 (464)
T ss_dssp EEE---TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCS
T ss_pred cCC---CCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCC
Confidence 553 3689999999999999999999999999999999999999999999999999999999999999888775 588
Q ss_pred cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~ 549 (587)
..|.+++++ +.+|++++.||.|++||+.+....... + ....+..++|++++++|++|+ +|.|++||+.+++
T Consensus 353 ~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~ 423 (464)
T 3v7d_B 353 ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-----H-HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK 423 (464)
T ss_dssp SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE-----E-CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC
T ss_pred CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee-----c-CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc
Confidence 899999997 579999999999999999876433221 1 134455689999999999998 8999999999999
Q ss_pred eEEE-EecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 550 VFRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 550 ~~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++.. +..|...|.+++|+ +..++++++.||.+.+|
T Consensus 424 ~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~ 459 (464)
T 3v7d_B 424 LVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLE 459 (464)
T ss_dssp EEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEE
T ss_pred EEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEE
Confidence 9886 56788999999997 45567777778876655
No 52
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-34 Score=299.75 Aligned_cols=281 Identities=14% Similarity=0.246 Sum_probs=239.0
Q ss_pred cCCCCCeEEEEEccCCCc-EEEEEeCCCeEEEEec----CCCCe-----eeEEEcc----------cCCceeeEEEecCC
Q 007855 293 SGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDV----FNSGK-----CMRTYMG----------HSKAVRDISFCNDG 352 (587)
Q Consensus 293 ~gH~~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~----~~~~~-----~~~~~~~----------h~~~V~~l~fs~dg 352 (587)
..|.+.|++++|+|+ +. +|++|+.||.|+||++ ..... ....+.. |...|++++|+|++
T Consensus 42 ~~~~~~v~~~~~s~~-~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 120 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPL-DESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDG 120 (425)
T ss_dssp EEECSCCSEEEECSS-CTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTS
T ss_pred eeccCceEEEEECCC-CCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCC
Confidence 456699999999999 77 9999999999999999 43331 3444443 68899999999999
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC---
Q 007855 353 TKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA--- 428 (587)
Q Consensus 353 ~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~--- 428 (587)
++|++++.||.|++|| .+++.+..+..+ ..+.++.|.+++ .+|++++.|+.|++||+.+++.+..+..+...
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 196 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDG---THIISMDVENVTILWNVISGTVMQHFELKETGGSS 196 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTS---SEEEEEETTCCEEEEETTTTEEEEEECCC------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCC---CEEEEEecCCeEEEEECCCCcEEEEeeccccCccc
Confidence 9999999999999999 667777777643 456678887754 58999999999999999999999999888777
Q ss_pred ------------eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEE
Q 007855 429 ------------VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 496 (587)
Q Consensus 429 ------------I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iw 496 (587)
+.++.|++++ .+++++.++.|++||+.....+..+. .|...|.+++|+|++.+|++++.|+.|++|
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~ 274 (425)
T 1r5m_A 197 INAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTNKLLLSASDDGTLRIW 274 (425)
T ss_dssp ---------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred eeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCCCEEEEEcCCCEEEEE
Confidence 9999999875 68899999999999999887766664 588899999999999999999999999999
Q ss_pred EcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 497 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 497 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
|+.+...+ ..+.+| ...+.+++|+|++ +|++++.+|.|++||+.+++.+..+..|...|.+++|+| ++.+|++
T Consensus 275 d~~~~~~~---~~~~~~--~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~ 347 (425)
T 1r5m_A 275 HGGNGNSQ---NCFYGH--SQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAV 347 (425)
T ss_dssp CSSSBSCS---EEECCC--SSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEE
T ss_pred ECCCCccc---eEecCC--CccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEE
Confidence 99876544 333444 4678899999999 999999999999999999999999999999999999999 7789999
Q ss_pred EECCCcEEEcC
Q 007855 577 CGWDGLIKYWD 587 (587)
Q Consensus 577 ~g~DG~I~iWD 587 (587)
++.||.|+|||
T Consensus 348 ~~~dg~i~i~~ 358 (425)
T 1r5m_A 348 AFMDGQVNVYD 358 (425)
T ss_dssp EETTSCEEEEE
T ss_pred EECCCeEEEEE
Confidence 99999999996
No 53
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-35 Score=308.64 Aligned_cols=283 Identities=15% Similarity=0.302 Sum_probs=240.0
Q ss_pred CCeEEEEEccCCCcEEEEE----------eCCCeEEEEecCCCCe---eeEEEcccCCceeeEEEecCCCeEEEEeCCCe
Q 007855 297 KGVSAIRFFPKYGHLILSA----------GMDTKVKIWDVFNSGK---CMRTYMGHSKAVRDISFCNDGTKFLTASYDKN 363 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sg----------s~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~ 363 (587)
..|.+++|+|++..+|++| +.|+.|+||++ ..+. ++..+ .|...|++++|+|++.+|++++.||.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~-~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~ 90 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSL-LAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGS 90 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEES-SSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSC
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEc-cCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCe
Confidence 4689999999944599999 89999999999 4443 33333 58899999999999999999999999
Q ss_pred EEEEECCC----CcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc------EEE---EEccCCCCe
Q 007855 364 IKYWDTET----GQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE------ITQ---EYDQHLGAV 429 (587)
Q Consensus 364 I~vWd~~t----~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~------~~~---~~~~h~~~I 429 (587)
|++||+.+ .+.+..+.. ...+.++.|++++ +.+|++++.|+.|++||+.++. ... .+..|...|
T Consensus 91 v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v 168 (416)
T 2pm9_A 91 LELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQ--DNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168 (416)
T ss_dssp EEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSS--TTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred EEEeecccccccccchhhccCCccceEEEEEcCCC--CCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence 99999988 346666654 3456788888752 3689999999999999999876 332 236799999
Q ss_pred eEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCC-----CcceeEEEEeCCC-CEEEEEECCC---eEEEEEcC
Q 007855 430 NTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-----MHSMPSISLHPNT-NWLAAQSLDN---QILIYSTR 499 (587)
Q Consensus 430 ~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-----~~~i~~i~~sp~g-~~l~~~s~dg---~I~iwd~~ 499 (587)
.+++|+|+ +.+|++++.|+.|++||++....+..+.... ...+.+++|+|++ .+|++++.++ .|++||++
T Consensus 169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~ 248 (416)
T 2pm9_A 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR 248 (416)
T ss_dssp CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence 99999998 7899999999999999999998887776432 7789999999997 6899999998 99999998
Q ss_pred Cceeecccceec-ccccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007855 500 ERFQLNKKKRFA-GHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 500 ~~~~~~~~~~~~-~~~~~~~i~~l~~sp-dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 577 (587)
+.... ...+. +| ...+.+++|+| ++.+|++++.||.|++||+.+++++..+.+|...|.+++|+|++..+|+++
T Consensus 249 ~~~~~--~~~~~~~~--~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~ 324 (416)
T 2pm9_A 249 NANTP--LQTLNQGH--QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACA 324 (416)
T ss_dssp STTSC--SBCCCSCC--SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred CCCCC--cEEeecCc--cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEE
Confidence 75322 23344 45 56789999999 999999999999999999999999999999999999999999554899999
Q ss_pred ECCCcEEEcC
Q 007855 578 GWDGLIKYWD 587 (587)
Q Consensus 578 g~DG~I~iWD 587 (587)
+.||.|+|||
T Consensus 325 ~~d~~i~iw~ 334 (416)
T 2pm9_A 325 SFDNKIEVQT 334 (416)
T ss_dssp CSSSEEEEEE
T ss_pred ecCCcEEEEE
Confidence 9999999996
No 54
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=9.4e-35 Score=297.71 Aligned_cols=281 Identities=12% Similarity=0.121 Sum_probs=236.1
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe---eeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK---CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIK 365 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~ 365 (587)
....+|.+.|++++|+|+ +.+|++++.||.|+||++. .+. ....+.+|...|.+++|+|+++ +|++++.||.|+
T Consensus 5 ~~~~~h~~~v~~~~~s~~-~~~l~~~~~d~~v~iw~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 82 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPS-KSLLLITSWDGSLTVYKFD-IQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL 82 (342)
T ss_dssp ECSSCCSSCEEEEEEEGG-GTEEEEEETTSEEEEEEEE-TTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred ecccCCCCcEEEEEEcCC-CCEEEEEcCCCeEEEEEeC-CCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence 345689999999999999 8999999999999999994 444 3455668999999999999999 999999999999
Q ss_pred EEEC-CCCcEEEEee--cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC---------CcEEEEEccCCCCeeEEE
Q 007855 366 YWDT-ETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGAVNTIT 433 (587)
Q Consensus 366 vWd~-~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t---------~~~~~~~~~h~~~I~~i~ 433 (587)
+||+ .+++...... ....+.++.+.+ +.+|++++.|+.|++||+++ ++.+..+. |...|.+++
T Consensus 83 ~wd~~~~~~~~~~~~~~~~~~v~~l~~~~----~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~ 157 (342)
T 1yfq_A 83 KVDLIGSPSFQALTNNEANLGICRICKYG----DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMD 157 (342)
T ss_dssp EECSSSSSSEEECBSCCCCSCEEEEEEET----TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEE
T ss_pred EEEeccCCceEeccccCCCCceEEEEeCC----CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEE
Confidence 9999 8887744333 445566777777 36899999999999999987 76666665 889999999
Q ss_pred EecCCCEEEEEECCCCEEEEECCC-CeE-EEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCc--e-eeccc
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGI-PVV-IKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRER--F-QLNKK 507 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~-~~~-~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~--~-~~~~~ 507 (587)
|++++ |++++.|+.|++||++. ... .......+...+.+++|+| ++.+|++++.||.|++|++... . .....
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~ 235 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR 235 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc
Confidence 99887 99999999999999987 432 3334446788999999999 9999999999999999998765 0 01223
Q ss_pred ceeccccc-------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCCEEEEEEcCCCCCEEEEEEC
Q 007855 508 KRFAGHIV-------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 508 ~~~~~~~~-------~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
..+..|.. ...+.+++|+|++++|++|+.||.|++||+.+++++..+.+| ...|.+++ | ++.+|++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-~~~~l~s~s~ 312 (342)
T 1yfq_A 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-SDNILCLATS 312 (342)
T ss_dssp EEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-CSSEEEEEEE
T ss_pred eeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-CCCeEEEEec
Confidence 34444432 347899999999999999999999999999999999999998 99999999 7 7789999999
Q ss_pred CCc
Q 007855 580 DGL 582 (587)
Q Consensus 580 DG~ 582 (587)
||.
T Consensus 313 Dg~ 315 (342)
T 1yfq_A 313 DDT 315 (342)
T ss_dssp CTH
T ss_pred CCc
Confidence 998
No 55
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.4e-33 Score=338.86 Aligned_cols=290 Identities=21% Similarity=0.327 Sum_probs=259.5
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
...+.+|.+.|++++|+|+ +.+|++|+.||+|+|||+ .+++.+..+.+|...|.+++|+|++++|++++.|+.|+|||
T Consensus 608 ~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~i~vw~~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd 685 (1249)
T 3sfz_A 608 RLVVRPHTDAVYHACFSQD-GQRIASCGADKTLQVFKA-ETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD 685 (1249)
T ss_dssp SEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eEEEecccccEEEEEECCC-CCEEEEEeCCCeEEEEEC-CCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence 4578899999999999999 999999999999999999 78899999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 369 TETGQVIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 369 ~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+.+++++..+..+. .+.++.|.+.. ...++++|+.|+.|++||+.+++.+..+.+|.+.|++++|+|++++|++++.|
T Consensus 686 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d 764 (1249)
T 3sfz_A 686 SATGKLVHTYDEHSEQVNCCHFTNKS-NHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 764 (1249)
T ss_dssp TTTCCEEEEEECCSSCEEEEEECSSS-SCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred CCCCceEEEEcCCCCcEEEEEEecCC-CceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence 99999999987554 45577777754 34689999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEECCCCeEEEEeecC------------CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccc
Q 007855 448 KSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
|.|++||+..+.....+... ....+.+++|+|++.++++++ ++.|.+|++.++...... ..+|
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~--~~~~-- 839 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEI--HTGH-- 839 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEE--ECSS--
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEE--cCCC--
Confidence 99999999988777665421 233688999999999999988 789999999887655332 2234
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...+.+++|+|++.++++++.+|.|++||+.++..+..+.+|...|.+++|+| ++.+|++++.||.|++||
T Consensus 840 ~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~ 910 (1249)
T 3sfz_A 840 HSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWE 910 (1249)
T ss_dssp SSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEE
T ss_pred CCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEE
Confidence 46788899999999999999999999999999999999999999999999999 788999999999999996
No 56
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=7.1e-33 Score=297.10 Aligned_cols=281 Identities=16% Similarity=0.327 Sum_probs=241.7
Q ss_pred eEEEEcCCCCCe-EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 288 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 288 ~i~tl~gH~~~V-~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
...++.+|...| +++.+. +.+|++|+.||+|++||+ .+++++..+.+|...|.+++|++++ +|++|+.||+|++
T Consensus 113 ~~~~l~~h~~~v~~~~~~~---~~~l~sgs~dg~i~vwd~-~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~v 187 (464)
T 3v7d_B 113 QRTTLRGHMTSVITCLQFE---DNYVITGADDKMIRVYDS-INKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRV 187 (464)
T ss_dssp EEEEEECCSSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEE
T ss_pred ceEEEcCCCCCcEEEEEEC---CCEEEEEcCCCcEEEEEC-CCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEE
Confidence 456889999885 666664 569999999999999999 7899999999999999999999988 9999999999999
Q ss_pred EECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-----------------------EEEEE
Q 007855 367 WDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-----------------------ITQEY 422 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-----------------------~~~~~ 422 (587)
||+.+++++..+..+ ..+.++.+.+.. .+.++++|+.|+.|++||++++. .+..+
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYK-NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL 266 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESS-SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEE
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCC-CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEc
Confidence 999999999988744 455677777643 34789999999999999998765 25567
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 423 DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 423 ~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.+|...|.++ ++++++|++++.|+.|++||+++...+..+. .|...|.+++|+|++.+|++++.||.|++||+.++.
T Consensus 267 ~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~ 343 (464)
T 3v7d_B 267 RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE 343 (464)
T ss_dssp CCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred cCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence 7899999887 5678899999999999999999998887774 588899999999999999999999999999998876
Q ss_pred eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCc
Q 007855 503 QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL 582 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~ 582 (587)
.+ ..+.+| ...+.+++|+ +.+|++|+.||.|++||+.++.....+. |...+..++|++ ++.+|++++ ||.
T Consensus 344 ~~---~~~~~h--~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~-~~~~~~~~~~~~-~~~~l~~~~-dg~ 413 (464)
T 3v7d_B 344 LM---YTLQGH--TALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH-HTNLSAITTFYV-SDNILVSGS-ENQ 413 (464)
T ss_dssp EE---EEECCC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE-CTTCCCEEEEEE-CSSEEEEEE-TTE
T ss_pred EE---EEEeCC--CCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec-CCCCccEEEEEe-CCCEEEEec-CCe
Confidence 55 344555 4668888887 5899999999999999999988766654 666778889999 777898888 999
Q ss_pred EEEcC
Q 007855 583 IKYWD 587 (587)
Q Consensus 583 I~iWD 587 (587)
|+|||
T Consensus 414 i~iwd 418 (464)
T 3v7d_B 414 FNIYN 418 (464)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 57
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=3.5e-33 Score=294.02 Aligned_cols=285 Identities=19% Similarity=0.361 Sum_probs=232.3
Q ss_pred CCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcC------------------CCCCeEE
Q 007855 240 NAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSG------------------HTKGVSA 301 (587)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~g------------------H~~~V~~ 301 (587)
+...+......+.+.+.+... +...+.|..... +++..+.+ +...|++
T Consensus 63 h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 63 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDG-------------SLVARLSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTC-------------CEEEEECC-----------------CCCCBEEE
T ss_pred CCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCC-------------CEEEEecCccccccccccccccccCCCceeEEE
Confidence 344444445555666666543 566777755432 22233333 3345999
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC
Q 007855 302 IRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG 381 (587)
Q Consensus 302 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~ 381 (587)
++|+|+ +.+|++|+.|++|+|||+ .+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++++...+...
T Consensus 129 v~~s~d-g~~l~s~~~d~~i~iwd~-~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~ 206 (393)
T 1erj_A 129 VCFSPD-GKFLATGAEDRLIRIWDI-ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE 206 (393)
T ss_dssp EEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS
T ss_pred EEECCC-CCEEEEEcCCCeEEEEEC-CCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC
Confidence 999999 999999999999999999 788999999999999999999999999999999999999999999999888877
Q ss_pred CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-------ccCCCCeeEEEEecCCCEEEEEECCCCEEEEE
Q 007855 382 KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-------DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454 (587)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-------~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd 454 (587)
....++.+.+. .+.+|++|+.|+.|++||++++..+..+ .+|...|.+++|+|++++|++++.|+.|++||
T Consensus 207 ~~v~~~~~~~~--~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd 284 (393)
T 1erj_A 207 DGVTTVAVSPG--DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN 284 (393)
T ss_dssp SCEEEEEECST--TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred CCcEEEEEECC--CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence 77778888873 3468999999999999999999888776 57999999999999999999999999999999
Q ss_pred CCCCe------------EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEE
Q 007855 455 FGIPV------------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 455 ~~~~~------------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
++... +...+ ..|...|.+++|+|++.+|++++.|+.|++||+.++..+ ..+.+| ...|.++
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~---~~l~~h--~~~v~~v 358 (393)
T 1erj_A 285 LQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL---LMLQGH--RNSVISV 358 (393)
T ss_dssp C---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE---EEEECC--SSCEEEE
T ss_pred CCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE---EEECCC--CCCEEEE
Confidence 97532 22222 358888999999999999999999999999999887654 445666 4668889
Q ss_pred EEcC------CCCEEEEEcCCCcEEEEeCCCC
Q 007855 523 NFSP------DGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 523 ~~sp------dg~~L~sgs~dG~I~vwd~~t~ 548 (587)
+|++ ++.+|++|+.||.|+||++...
T Consensus 359 ~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred EecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 9876 6889999999999999997543
No 58
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=288.58 Aligned_cols=275 Identities=20% Similarity=0.318 Sum_probs=214.5
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEE-cC-CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC----
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTW-SG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN---- 328 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl-~g-H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~---- 328 (587)
+.++...|..+|.|-..... .+++.++ .+ |...|++|+|+|+ +.+|++|+.|++|+||++..
T Consensus 26 ~las~~~D~~i~lw~~~~~~-----------~~~~~~~~~~~h~~~v~~v~~sp~-~~~las~s~D~~v~iw~~~~~~~~ 93 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDD-----------FTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADR 93 (330)
T ss_dssp EEEEEESSSCEEEEECSSSC-----------CEEEEEECTTCCCSCEEEEEECTT-SSEEEEEETTSCEEEEEC------
T ss_pred EEEEEcCCCEEEEEEecCCC-----------eEEEEEEecCCccCCEEEEEECCC-CCEEEEEeCCCcEEEEEcccCcCc
Confidence 67788889999999654321 2345566 45 9999999999999 89999999999999999832
Q ss_pred --CCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC----cEEEEeecC-CcceEEEEccCCCCCcEEEE
Q 007855 329 --SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----QVIRTFSTG-KIPYVVKLNPDDDKQNILLA 401 (587)
Q Consensus 329 --~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~----~~i~~~~~~-~~~~~~~~~~~~~~~~~l~s 401 (587)
...++..+.+|...|.+++|+|++++|++|+.|++|+|||+... +++..+..+ ..+.++.|+|++ .+|++
T Consensus 94 ~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~---~~l~s 170 (330)
T 2hes_X 94 TFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE---ALLAS 170 (330)
T ss_dssp -CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS---SEEEE
T ss_pred cccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC---CEEEE
Confidence 23567889999999999999999999999999999999999432 456666543 446678888754 58999
Q ss_pred EeCCCcEEEEeCCCC--cEEEEEccCCCCeeEEEEecC--CCEEEEEECCCCEEEEECCCC--------eEEEEeecCCC
Q 007855 402 GMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIP--------VVIKYISEPHM 469 (587)
Q Consensus 402 g~~dg~I~iwD~~t~--~~~~~~~~h~~~I~~i~~sp~--~~~l~s~s~Dg~I~iwd~~~~--------~~~~~~~~~~~ 469 (587)
|+.|+.|++||+.++ +.+..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+... .....+...|.
T Consensus 171 ~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~ 250 (330)
T 2hes_X 171 SSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK 250 (330)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS
T ss_pred EcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc
Confidence 999999999999876 678889999999999999998 678999999999999998654 33444444488
Q ss_pred cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc-ceEEEEEcC--CCCEEEEEcCCCcEEEEeCC
Q 007855 470 HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG-YACQVNFSP--DGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~i~~l~~sp--dg~~L~sgs~dG~I~vwd~~ 546 (587)
..|.+++|++++ +|++++.||.|++|+..++..........+| .. .+.+++|+| ++++|++|+.||.|+||++.
T Consensus 251 ~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h--~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~ 327 (330)
T 2hes_X 251 RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCH--GVYEINVVKWLELNGKTILATGGDDGIVNFWSLE 327 (330)
T ss_dssp SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTT--TTSCEEEEEEC-----CCEEEEETTSEEEEEEC-
T ss_pred cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecccccc--ccceEEEEEEecCCCceEEEEecCCCcEEEEEec
Confidence 899999999765 8999999999999998765321111222344 33 688899999 78999999999999999986
Q ss_pred C
Q 007855 547 S 547 (587)
Q Consensus 547 t 547 (587)
.
T Consensus 328 ~ 328 (330)
T 2hes_X 328 K 328 (330)
T ss_dssp -
T ss_pred c
Confidence 4
No 59
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1e-33 Score=286.30 Aligned_cols=255 Identities=20% Similarity=0.342 Sum_probs=208.0
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-CCeeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIK 365 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~ 365 (587)
+..+.+|.+.|++++|+|+ +++|++|+.|++|+||++.. ..+++.++.+|...|.+++|++ ++++|++|+.|++|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~-g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYY-GKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCC-CCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEE
Confidence 4568899999999999999 99999999999999999942 3467889999999999999986 489999999999999
Q ss_pred EEECCCCc--EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc--EEEEEccCCCCeeEEEEecC---
Q 007855 366 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDN--- 437 (587)
Q Consensus 366 vWd~~t~~--~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~--~~~~~~~h~~~I~~i~~sp~--- 437 (587)
|||+.+++ .+..+. +...+.+++|.|+. .+.+|++|+.|+.|++||++++. ....+.+|...|++++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~ 159 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC--
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCC-CCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccc
Confidence 99999874 344444 33456678888752 13689999999999999998763 24567789999999999996
Q ss_pred ----------CCEEEEEECCCCEEEEECCCCe----EEEEeecCCCcceeEEEEeCCC---CEEEEEECCCeEEEEEcCC
Q 007855 438 ----------NRRFVTSSDDKSLRVWEFGIPV----VIKYISEPHMHSMPSISLHPNT---NWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 438 ----------~~~l~s~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~i~~i~~sp~g---~~l~~~s~dg~I~iwd~~~ 500 (587)
+++|++++.|++|++||++... ....+ ..|...|.+++|+|++ .+|++++.|+.|+|||+..
T Consensus 160 ~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ----------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred ccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 5799999999999999997654 33333 4689999999999984 8999999999999999876
Q ss_pred ceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
.........+..+.....+.+++|+|+|++|++++.||.|+||+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred CCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 4211111122112225678899999999999999999999999976
No 60
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-34 Score=301.17 Aligned_cols=281 Identities=12% Similarity=0.119 Sum_probs=218.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCC-------CeEEEEecCCCCe---------eeEEEcccCCceeeEEEecCCCeEEEE-
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMD-------TKVKIWDVFNSGK---------CMRTYMGHSKAVRDISFCNDGTKFLTA- 358 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~D-------g~I~iWd~~~~~~---------~~~~~~~h~~~V~~l~fs~dg~~l~s~- 358 (587)
.-+|+|++|+|+ +++|++|+.+ +.|+||++..... ....+.+|...|.+++++ +..++++
T Consensus 14 g~PV~sv~fs~d-g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 14 GYPAYGAKFLNN-DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp SSCEEEEEEEET-TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CCCEEEEEEeCC-CcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 347999999999 9999999754 3699999843321 113466888899988775 4466665
Q ss_pred ----------eCCCeEEEEECCCCcE-EE---Eeec------CCcceEEEEccCCCCCcEEE--EEeCCCcEEEEeCCCC
Q 007855 359 ----------SYDKNIKYWDTETGQV-IR---TFST------GKIPYVVKLNPDDDKQNILL--AGMSDKKIVQWDMNTK 416 (587)
Q Consensus 359 ----------s~Dg~I~vWd~~t~~~-i~---~~~~------~~~~~~~~~~~~~~~~~~l~--sg~~dg~I~iwD~~t~ 416 (587)
+.|+.|++|++.+... +. .... .....+++|+|++. +++ +++.|+.|++||+.++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~---~la~as~~~d~~i~iwd~~~~ 167 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGT---VAAIASSKVPAIMRIIDPSDL 167 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSS---CEEEEESCSSCEEEEEETTTT
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCC---EEEEEECCCCCEEEEeECCCC
Confidence 4578899999876532 21 1111 12245788888653 444 3446899999999999
Q ss_pred cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEE-EEeecCCCcceeEEEEeCCCCEEEEEECCC----
Q 007855 417 EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDN---- 491 (587)
Q Consensus 417 ~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg---- 491 (587)
+.+..+. |...|.+++|+|++++|++++.+ .+++|+..++..+ ......|...|.+++|+|++.++++++.++
T Consensus 168 ~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~ 245 (365)
T 4h5i_A 168 TEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGI 245 (365)
T ss_dssp EEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCE
T ss_pred cEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCccee
Confidence 9988885 77889999999999999999855 5667776666554 344456788899999999999999999887
Q ss_pred eEEEEEcCCcee-ecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-ecCCCCEEEEEEcCC
Q 007855 492 QILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-KCHEGVCIGCEWHPL 569 (587)
Q Consensus 492 ~I~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l-~~h~~~V~~v~~sp~ 569 (587)
.+++|++..... ......+.+| ...|++++|||+|++||+|+.||.|+|||+.+++++..+ .+|...|++++|+|
T Consensus 246 ~i~~~~~~~~~~~~~~~~~~~~~--~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSp- 322 (365)
T 4h5i_A 246 VLTKISIKSGNTSVLRSKQVTNR--FKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISP- 322 (365)
T ss_dssp EEEEEEEETTEEEEEEEEEEESS--CSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECT-
T ss_pred EEeecccccceecceeeeeecCC--CCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECC-
Confidence 688898765432 2223344555 467899999999999999999999999999999999886 78999999999999
Q ss_pred CCCEEEEEECCCcEEEcC
Q 007855 570 EQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 570 ~~~~l~s~g~DG~I~iWD 587 (587)
++.+|+|||.|++|+|||
T Consensus 323 dg~~laS~S~D~tvrvw~ 340 (365)
T 4h5i_A 323 DSTYVASVSAANTIHIIK 340 (365)
T ss_dssp TSCEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCeEEEEE
Confidence 788999999999999996
No 61
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.9e-33 Score=290.72 Aligned_cols=294 Identities=19% Similarity=0.315 Sum_probs=230.5
Q ss_pred CCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEE
Q 007855 244 EKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 323 (587)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 323 (587)
.......+.+.+.++...|..+|.|-...... ........+|...|++|+|+|+ +.+|++|+.|++|+|
T Consensus 19 v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------~~~~~~~~~h~~~v~~~~~sp~-g~~l~s~s~D~~v~i 87 (345)
T 3fm0_A 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------ICKSVLSEGHQRTVRKVAWSPC-GNYLASASFDATTCI 87 (345)
T ss_dssp EEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------EEEEEECSSCSSCEEEEEECTT-SSEEEEEETTSCEEE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------eeeeeeccccCCcEEEEEECCC-CCEEEEEECCCcEEE
Confidence 33445666777888999999999996543210 0011234689999999999999 999999999999999
Q ss_pred EecCCCC--eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc---EEEEeecC-CcceEEEEccCCCCCc
Q 007855 324 WDVFNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFSTG-KIPYVVKLNPDDDKQN 397 (587)
Q Consensus 324 Wd~~~~~--~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~~-~~~~~~~~~~~~~~~~ 397 (587)
|++ ..+ .++..+.+|...|.+++|+|++++|++|+.|++|++||+.++. ++..+..+ ..+..+.|+|++ .
T Consensus 88 w~~-~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~---~ 163 (345)
T 3fm0_A 88 WKK-NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ---E 163 (345)
T ss_dssp EEE-CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS---S
T ss_pred EEc-cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC---C
Confidence 998 443 5678899999999999999999999999999999999998764 34444433 345677888754 5
Q ss_pred EEEEEeCCCcEEEEeCCCCc--EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC---------------eE
Q 007855 398 ILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP---------------VV 460 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~--~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~---------------~~ 460 (587)
+|++|+.|+.|++||++++. ....+.+|...|++++|+|++++|++++.|++|+||+...+ .+
T Consensus 164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~ 243 (345)
T 3fm0_A 164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC 243 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence 79999999999999998875 45678899999999999999999999999999999996321 23
Q ss_pred EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc------cceecccccccceEEEEEcCCC-CEEEE
Q 007855 461 IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------KKRFAGHIVAGYACQVNFSPDG-RFVMS 533 (587)
Q Consensus 461 ~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~------~~~~~~~~~~~~i~~l~~spdg-~~L~s 533 (587)
+..+...|...|.+++|+|++..|++++.|+.|++|+......... .....+| ...|.+++|+|++ .+|++
T Consensus 244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~v~~~p~~~~~laS 321 (345)
T 3fm0_A 244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAH--SQDVNCVAWNPKEPGLLAS 321 (345)
T ss_dssp EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSS--SSCEEEEEECSSSTTEEEE
T ss_pred eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccc--cCcEeEeEEeCCCceEEEE
Confidence 3444445788999999999999999999999999999865422110 1112344 5679999999998 59999
Q ss_pred EcCCCcEEEEeCCCCeeEEEE
Q 007855 534 GDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 534 gs~dG~I~vwd~~t~~~~~~l 554 (587)
|+.||.|++|++.+.+.+...
T Consensus 322 ~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 322 CSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EETTSCEEEEEECC-------
T ss_pred cCCCCcEEEEEecCCCCcccc
Confidence 999999999999988765544
No 62
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.7e-33 Score=297.38 Aligned_cols=301 Identities=23% Similarity=0.396 Sum_probs=256.5
Q ss_pred ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCee
Q 007855 253 STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC 332 (587)
Q Consensus 253 ~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 332 (587)
..+.+....|..++.|-.. ..+++.++.+|...|++++|+ +.+|++|+.||+|++||+ .++++
T Consensus 129 g~~l~sg~~dg~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~~---~~~l~s~~~dg~i~vwd~-~~~~~ 191 (445)
T 2ovr_B 129 GNRIVSGSDDNTLKVWSAV-------------TGKCLRTLVGHTGGVWSSQMR---DNIIISGSTDRTLKVWNA-ETGEC 191 (445)
T ss_dssp TTEEEEEETTSCEEEEETT-------------TCCEEEECCCCSSCEEEEEEE---TTEEEEEETTSCEEEEET-TTTEE
T ss_pred CCEEEEEECCCcEEEEECC-------------CCcEEEEEcCCCCCEEEEEec---CCEEEEEeCCCeEEEEEC-CcCcE
Confidence 4455666677777777443 346788999999999999997 459999999999999999 78899
Q ss_pred eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 333 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 333 ~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
+..+.+|...|.++.|+ +..|++|+.||.|++||+.+++.+..+..+.. +.++.+ + +.++++|+.||.|++|
T Consensus 192 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~---~~~l~~~~~dg~i~iw 264 (445)
T 2ovr_B 192 IHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D---GRRVVSGAYDFMVKVW 264 (445)
T ss_dssp EEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C---SSCEEEEETTSCEEEE
T ss_pred EEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C---CCEEEEEcCCCEEEEE
Confidence 99999999999999996 56899999999999999999999988875433 334444 2 3579999999999999
Q ss_pred eCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC
Q 007855 412 DMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN 491 (587)
Q Consensus 412 D~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg 491 (587)
|+++++.+..+..|...|.++.| ++.++++++.|+.|++||++++..+..+. .|...+.++.+ ++.+|++++.||
T Consensus 265 d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg 339 (445)
T 2ovr_B 265 DPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT-GHQSLTSGMEL--KDNILVSGNADS 339 (445)
T ss_dssp EGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEEC-CCCSCEEEEEE--ETTEEEEEETTS
T ss_pred ECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEc-CCcccEEEEEE--eCCEEEEEeCCC
Confidence 99999999999999999999999 78899999999999999999998887774 47777877776 467999999999
Q ss_pred eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE-----ecCCCCEEEEEE
Q 007855 492 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL-----KCHEGVCIGCEW 566 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l-----~~h~~~V~~v~~ 566 (587)
.|++||+.++..+........| ...+.+++|+ +++|++|+.||.|++||+.+++.+..+ ..|.+.|++++|
T Consensus 340 ~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~ 415 (445)
T 2ovr_B 340 TVKIWDIKTGQCLQTLQGPNKH--QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 415 (445)
T ss_dssp CEEEEETTTCCEEEEECSTTSC--SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred eEEEEECCCCcEEEEEccCCCC--CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence 9999999887665443332224 5678888885 689999999999999999999999888 468889999999
Q ss_pred cCCCCCEEEEEECCCc----EEEcC
Q 007855 567 HPLEQSKVATCGWDGL----IKYWD 587 (587)
Q Consensus 567 sp~~~~~l~s~g~DG~----I~iWD 587 (587)
+| ++.+|++|+.||+ |.|||
T Consensus 416 s~-~~~~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 416 SN-TKLVCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp CS-SEEEEEEECSSSSSCCEEEEEE
T ss_pred cC-CEEEEEEcccCCCCccEEEEEE
Confidence 99 7889999999998 99996
No 63
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3.7e-34 Score=302.37 Aligned_cols=278 Identities=13% Similarity=0.149 Sum_probs=233.2
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
.+++++|+|+ +.+|++|+.||.|++|++ ..+.....+..| ..+....|++++++|++++.||.|+|||+.+++.+..
T Consensus 58 ~~~~~~~s~~-g~~l~~~~~d~~v~i~d~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 134 (420)
T 3vl1_A 58 AGKGNTFEKV-GSHLYKARLDGHDFLFNT-IIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREI 134 (420)
T ss_dssp CCTTCEEEEE-ETTEEEEEETTEEEEEEC-CSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEE
T ss_pred cccceeeeec-CCeEEEEEcCCcEEEEEe-cccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeee
Confidence 4568999999 899999999999999999 666666556556 4455567899999999999999999999999998888
Q ss_pred ee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECC
Q 007855 378 FS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 378 ~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~ 456 (587)
+. +...+.+++|++++ .+|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||++
T Consensus 135 ~~~h~~~v~~~~~~~~~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~ 211 (420)
T 3vl1_A 135 DQAHVSEITKLKFFPSG---EALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECG 211 (420)
T ss_dssp TTSSSSCEEEEEECTTS---SEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred cccccCccEEEEECCCC---CEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECC
Confidence 64 44566788888754 589999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeec--CCC---------------------cceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccc
Q 007855 457 IPVVIKYISE--PHM---------------------HSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 513 (587)
Q Consensus 457 ~~~~~~~~~~--~~~---------------------~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 513 (587)
++..+..+.. .+. ..+.+++|+|++++|++++.||.|++||++++..+... ...|
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~--~~~~ 289 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQL--PSKF 289 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEE--CCTT
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEc--cccc
Confidence 9988877753 233 33444556789999999999999999999887554322 2223
Q ss_pred ccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCCCe-eEEEEec-CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 514 IVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKSCK-VFRTLKC-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 514 ~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~t~~-~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
...+.+++|+|++. +|++|+.||.|++||+++++ ++..+.. |...|.++.|. ++.+|++++.||.|++||
T Consensus 290 --~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 290 --TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp --SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEE
T ss_pred --CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEe
Confidence 46788999999999 99999999999999999875 4777777 66678877655 456999999999999996
No 64
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.2e-33 Score=288.04 Aligned_cols=278 Identities=15% Similarity=0.258 Sum_probs=236.2
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
|.+.|.+++|+|+ |.+++++..++.+.+|........+ ...+|...|++++|+|++++|++++ ||.|++||+.++..
T Consensus 8 ~~~~v~~~~~s~d-g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~ 84 (337)
T 1gxr_A 8 GSKPAYSFHVTAD-GQMQPVPFPPDALIGPGIPRHARQI-NTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN 84 (337)
T ss_dssp EEEECCEEEECSS-SCEEECCCCTTSSSSTTCCSEEEEE-EEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC
T ss_pred cCCceeEEEECCC-CCEEEeecCCCcEeccccCCccccc-eeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc
Confidence 4567999999999 8999888888888787763333343 4447999999999999999999999 99999999987753
Q ss_pred E---EEe---ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc--EEEEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 375 I---RTF---STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE--ITQEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 375 i---~~~---~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~--~~~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
. ..+ .....+.++.+.+++ .+|++++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.
T Consensus 85 ~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 161 (337)
T 1gxr_A 85 KSPVSQLDCLNRDNYIRSCKLLPDG---CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS 161 (337)
T ss_dssp CSCSEEEECSCTTSBEEEEEECTTS---SEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eeeeecccccCCCCcEEEEEEcCCC---CEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence 2 222 234456677777744 589999999999999999887 66778889999999999999999999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
|+.|++||+++...+..+. .|...+.+++|+|++.+|++++.|+.|++||++++..+.... ....+.+++|+|
T Consensus 162 dg~v~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~------~~~~v~~~~~s~ 234 (337)
T 1gxr_A 162 DGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHD------FTSQIFSLGYCP 234 (337)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE------CSSCEEEEEECT
T ss_pred CCcEEEEeCCCCceeeeee-cccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeec------CCCceEEEEECC
Confidence 9999999999998887774 488899999999999999999999999999998876553321 245688899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++++|++++.+|.|++||+.+++.. .+..|...|.+++|+| ++.+|++++.||.|++||
T Consensus 235 ~~~~l~~~~~~~~i~~~~~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 235 TGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp TSSEEEEEETTSCEEEEETTSSCEE-EECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEE
T ss_pred CCCEEEEEcCCCcEEEEECCCCCeE-EEcCCccceeEEEECC-CCCEEEEecCCCcEEEEE
Confidence 9999999999999999999988754 6778999999999999 778999999999999996
No 65
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.5e-33 Score=322.29 Aligned_cols=202 Identities=14% Similarity=0.162 Sum_probs=164.3
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 318 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D 318 (587)
++...+......+...+.+.+..|..+|.|-... .+++.. ..|...|++|+|+| +.+|++++.|
T Consensus 15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-------------~~~~~~-~~~~~~V~~l~fsp--g~~L~S~s~D 78 (902)
T 2oaj_A 15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-------------VEVVIK-LEDRSAIKEMRFVK--GIYLVVINAK 78 (902)
T ss_dssp ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTT-------------CEEEEE-CSSCCCEEEEEEET--TTEEEEEETT
T ss_pred CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCC-------------cEEEEE-cCCCCCEEEEEEcC--CCEEEEEECc
Confidence 4444555566777778889999999999994321 122333 35888999999999 4599999999
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE-e----------e-cCCcceE
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT-F----------S-TGKIPYV 386 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~-~----------~-~~~~~~~ 386 (587)
++|+|||+ .+++++..+. |...|++++|+|++++|++|+.||.|++||+.++++... + . +...+.+
T Consensus 79 ~~v~lWd~-~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~s 156 (902)
T 2oaj_A 79 DTVYVLSL-YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVS 156 (902)
T ss_dssp CEEEEEET-TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCE
T ss_pred CeEEEEEC-CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEE
Confidence 99999999 6788888885 778999999999999999999999999999999876411 1 1 2245668
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC------------------CCCeeEEEEecCCCEEEEEECCC
Q 007855 387 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH------------------LGAVNTITFVDNNRRFVTSSDDK 448 (587)
Q Consensus 387 ~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h------------------~~~I~~i~~sp~~~~l~s~s~Dg 448 (587)
++|+|.+ ..++++|+.||.| +||+++++.+..+..| ...|++++|+|++.+|++++.||
T Consensus 157 l~~sp~~--~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg 233 (902)
T 2oaj_A 157 IQWNPRD--IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDN 233 (902)
T ss_dssp EEEETTE--EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTC
T ss_pred EEEccCC--CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCC
Confidence 8888753 3579999999999 9999999998888765 47799999999999999999999
Q ss_pred CEEEEECCCCeEE
Q 007855 449 SLRVWEFGIPVVI 461 (587)
Q Consensus 449 ~I~iwd~~~~~~~ 461 (587)
.|++||+++++++
T Consensus 234 ~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 234 SLVFWDANSGHMI 246 (902)
T ss_dssp CEEEEETTTCCEE
T ss_pred eEEEEECCCCcEE
Confidence 9999999766544
No 66
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.7e-33 Score=336.33 Aligned_cols=318 Identities=18% Similarity=0.274 Sum_probs=265.9
Q ss_pred cccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC
Q 007855 250 EDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS 329 (587)
Q Consensus 250 ~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~ 329 (587)
.+...+.++...|..++.|. ....+.+.++.+|...|++++|+|+ +.+|++|+.||+|+|||+ .+
T Consensus 624 s~~~~~l~s~~~d~~i~vw~-------------~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~d~~v~vwd~-~~ 688 (1249)
T 3sfz_A 624 SQDGQRIASCGADKTLQVFK-------------AETGEKLLDIKAHEDEVLCCAFSSD-DSYIATCSADKKVKIWDS-AT 688 (1249)
T ss_dssp CTTSSEEEEEETTSCEEEEE-------------TTTCCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEET-TT
T ss_pred CCCCCEEEEEeCCCeEEEEE-------------CCCCCEEEEeccCCCCEEEEEEecC-CCEEEEEeCCCeEEEEEC-CC
Confidence 33444455555555555553 3445678899999999999999999 899999999999999999 78
Q ss_pred CeeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCC
Q 007855 330 GKCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDK 406 (587)
Q Consensus 330 ~~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg 406 (587)
++++..+.+|...|.+++|++ ++.++++++.|+.|++||+.+++++..+..+ ..+.+++|++++ .++++|+.||
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~---~~l~s~s~dg 765 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD---ELLASCSADG 765 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST---TEEEEEESSS
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC---CEEEEEECCC
Confidence 999999999999999999999 5668999999999999999999999888654 345677787754 5899999999
Q ss_pred cEEEEeCCCCcEEEEE-------------------------------------------------------ccCCCCeeE
Q 007855 407 KIVQWDMNTKEITQEY-------------------------------------------------------DQHLGAVNT 431 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~-------------------------------------------------------~~h~~~I~~ 431 (587)
.|++||+.++.....+ .+|...|.+
T Consensus 766 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~ 845 (1249)
T 3sfz_A 766 TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQY 845 (1249)
T ss_dssp EEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCE
T ss_pred eEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEE
Confidence 9999998776543332 267889999
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc----
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK---- 507 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~---- 507 (587)
++|+|++.++++++.|+.|++|++.++..+..+. .|...|.+++|+|++.+|++++.|+.|++|++.........
T Consensus 846 ~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~ 924 (1249)
T 3sfz_A 846 CDFSPYDHLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ 924 (1249)
T ss_dssp EEECSSTTEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence 9999999999999999999999999998887765 58899999999999999999999999999997542110000
Q ss_pred ----------------------ceec------ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007855 508 ----------------------KRFA------GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 559 (587)
Q Consensus 508 ----------------------~~~~------~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~ 559 (587)
.... .......+.+++|+|+++++++|+.+|.|++|++.+++.+..+.+|..
T Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~ 1004 (1249)
T 3sfz_A 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKK 1004 (1249)
T ss_dssp EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSS
T ss_pred eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCC
Confidence 0000 001134578899999999999999999999999999999999999999
Q ss_pred CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 560 VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.|++++|+| ++.+|++++.||.|++||
T Consensus 1005 ~v~~l~~s~-dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A 1005 AVRHIQFTA-DGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp CCCCEEECS-SSSCEEEECSSSBEEEEE
T ss_pred ceEEEEECC-CCCEEEEEcCCCEEEEEE
Confidence 999999999 778999999999999996
No 67
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=2.3e-34 Score=293.90 Aligned_cols=250 Identities=20% Similarity=0.363 Sum_probs=202.6
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEec--CCCeEEEEeCCCeEEE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDKNIKY 366 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg~I~v 366 (587)
.+.+|.+.|++++|+|+ +++|++|+.|++|+|||+ ..+ .++..+.+|...|.+++|++ ++++|++|+.|++|+|
T Consensus 8 ~~~~H~~~V~~v~~s~~-g~~lasgs~D~~v~lwd~-~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~i 85 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYY-GTRLATCSSDRSVKIFDV-RNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVII 85 (316)
T ss_dssp ------CCEEEEEECGG-GCEEEEEETTTEEEEEEE-ETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEE
T ss_pred ecccccCeEEEeeEcCC-CCEEEEEeCCCeEEEEEe-cCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEE
Confidence 56799999999999999 999999999999999999 444 35678999999999999986 4889999999999999
Q ss_pred EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC--CCEEEEE
Q 007855 367 WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN--NRRFVTS 444 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~--~~~l~s~ 444 (587)
||++++.. ..+..+.+|...|++++|+|+ +.+|+++
T Consensus 86 Wd~~~~~~------------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~lasg 123 (316)
T 3bg1_A 86 WREENGTW------------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLILACG 123 (316)
T ss_dssp ECCSSSCC------------------------------------------CEEEEECCCSSCCCEEEECCTTTCSCEEEE
T ss_pred EECCCCcc------------------------------------------eEEEEccCCCCceEEEEECCCCCCcEEEEE
Confidence 99875320 122345578999999999997 7899999
Q ss_pred ECCCCEEEEECCCCeE--EEEeecCCCcceeEEEEeCC-----------------CCEEEEEECCCeEEEEEcCCceeec
Q 007855 445 SDDKSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPN-----------------TNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~--~~~~~~~~~~~i~~i~~sp~-----------------g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+.|+.|++||++.... .......|...+.+++|+|+ +.+|++++.|+.|++||+.......
T Consensus 124 s~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~ 203 (316)
T 3bg1_A 124 SSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWK 203 (316)
T ss_dssp CSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEE
T ss_pred cCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccc
Confidence 9999999999987632 22334568888999999997 4789999999999999997543222
Q ss_pred ccceecccccccceEEEEEcCCC----CEEEEEcCCCcEEEEeCCCC---e-eEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDG----RFVMSGDGEGKCWFWDWKSC---K-VFRTLKCHEGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg----~~L~sgs~dG~I~vwd~~t~---~-~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 577 (587)
....+.+| ...|.+++|+|++ .+|++|+.||.|+||++.+. . ....+..|...|.+++|+| ++.+|+++
T Consensus 204 ~~~~l~~h--~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp-~g~~las~ 280 (316)
T 3bg1_A 204 EEQKLEAH--SDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSI-TANILAVS 280 (316)
T ss_dssp EEECCBCC--SSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECT-TTCCEEEE
T ss_pred eeeecccC--CCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcC-CCCEEEEE
Confidence 34456667 5679999999987 89999999999999998762 1 2334567899999999999 77899999
Q ss_pred ECCCcEEEcC
Q 007855 578 GWDGLIKYWD 587 (587)
Q Consensus 578 g~DG~I~iWD 587 (587)
+.||+|+||+
T Consensus 281 ~~D~~v~lw~ 290 (316)
T 3bg1_A 281 GGDNKVTLWK 290 (316)
T ss_dssp ESSSCEEEEE
T ss_pred cCCCeEEEEE
Confidence 9999999996
No 68
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-35 Score=316.71 Aligned_cols=315 Identities=10% Similarity=0.032 Sum_probs=226.5
Q ss_pred eEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccC-----CCcEEEEEeCCCeEEEEecCC
Q 007855 254 TFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-----YGHLILSAGMDTKVKIWDVFN 328 (587)
Q Consensus 254 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~-----~g~~L~sgs~Dg~I~iWd~~~ 328 (587)
.+.+++..|..+|.|-...... ......++.+|.+.|.+|+|+|+ .+.+||+|+.||+|+|||+.
T Consensus 174 ~~laS~s~D~tI~iWd~~~~~~---------~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~- 243 (524)
T 2j04_B 174 EMFDKEKHSSCIQIFKMNTSTL---------HCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEII- 243 (524)
T ss_dssp --------CEEEEEEEEETTTC---------CEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECC-
T ss_pred hhhccCCCCceEEEEEccCCCC---------CceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcC-
Confidence 3447788999999997654321 11234567889999999999996 25799999999999999994
Q ss_pred CCe-----------eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-EEEEeecC-CcceEEEEccCCCC
Q 007855 329 SGK-----------CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTG-KIPYVVKLNPDDDK 395 (587)
Q Consensus 329 ~~~-----------~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~~-~~~~~~~~~~~~~~ 395 (587)
.+. +..++.+|...|++++|+++ ..|++|+.||+|++||++++. +...+..+ ..+..+++......
T Consensus 244 ~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g 322 (524)
T 2j04_B 244 DNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFE 322 (524)
T ss_dssp CCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTS
T ss_pred CCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCC
Confidence 332 23578899999999999986 489999999999999999774 33444433 33444432222221
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC--CeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCccee
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEYDQHLG--AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 473 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~--~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~ 473 (587)
..+|++|+.|++|++||+++++.+..+.+|.. .|.+++|+|++..|++++.|++|++||++.+.++..+. .|...|.
T Consensus 323 ~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V~ 401 (524)
T 2j04_B 323 DTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTIT 401 (524)
T ss_dssp CCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCEE
T ss_pred CeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeee-cCCCceE
Confidence 26899999999999999999887766766653 58999999999999999999999999999887766554 4899999
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccc---ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC-CCe
Q 007855 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH---IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK-SCK 549 (587)
Q Consensus 474 ~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~-t~~ 549 (587)
+++|+|++++|++|+.|++|++|++... .+ ..+... .....+.+++|+|+|..+. ...+ +.+|++. ++.
T Consensus 402 sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~---~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~~--~~~~~~~~~g~ 474 (524)
T 2j04_B 402 AIGVSRLHPMVLAGSADGSLIITNAARR-LL---HGIKNSSATQKSLRLWKWDYSIKDDKYR-IDSS--YEVYPLTVNDV 474 (524)
T ss_dssp EEECCSSCCBCEEEETTTEEECCBSCSS-TT---TCC------CCCCEEEECBCCSSSCEEE-ECCC--CCCCC------
T ss_pred EEEeCCCCCeEEEEECCCEEEEEechHh-hc---cccccCccceeeeEEEEeccCCCCCeEE-ccCC--ceecccccCCc
Confidence 9999999999999999999999998643 11 111110 1122466899999998553 2222 3345443 577
Q ss_pred eEEEEecCCCCEEEEEEcCCC--CCEEEEEECCCcEEEcC
Q 007855 550 VFRTLKCHEGVCIGCEWHPLE--QSKVATCGWDGLIKYWD 587 (587)
Q Consensus 550 ~~~~l~~h~~~V~~v~~sp~~--~~~l~s~g~DG~I~iWD 587 (587)
++..+.+|...|.+++|+|++ +..|++|+.||.|+||+
T Consensus 475 ~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~ 514 (524)
T 2j04_B 475 SKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY 514 (524)
T ss_dssp -------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred ceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence 888899999999999999953 35899999999999995
No 69
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-32 Score=304.41 Aligned_cols=323 Identities=15% Similarity=0.172 Sum_probs=265.5
Q ss_pred CCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCC-eEEEEEcc--CCCcEEEEEeCC
Q 007855 242 GGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKG-VSAIRFFP--KYGHLILSAGMD 318 (587)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~-V~~l~~sp--~~g~~L~sgs~D 318 (587)
+........+.+.+.+... +..++.|...... -+.+.+..+.+|... |++++|+| + +.+|++|+.|
T Consensus 19 ~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~---------~~~~~~~~~~~h~~~~v~~~~~sp~~~-~~~l~s~~~d 87 (615)
T 1pgu_A 19 NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGD---------SKVPPVVQFTGHGSSVVTTVKFSPIKG-SQYLCSGDES 87 (615)
T ss_dssp TCCCCCEEETTTTEEEEEE-TTEEEEEECCSSC---------CSSCSEEEECTTTTSCEEEEEECSSTT-CCEEEEEETT
T ss_pred CceeEEEECCCCCEEEEec-CCeEEEEECCCCC---------CccccceEEecCCCceEEEEEECcCCC-CCEEEEecCC
Confidence 3444445555555555444 5567777544211 112567899999999 99999999 8 9999999999
Q ss_pred CeEEEEecCC-------CCeeeEEEcccCCceeeEEEecCCCeEEEEeCC----CeEEEEECCCCcEEEEeecC-CcceE
Q 007855 319 TKVKIWDVFN-------SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFSTG-KIPYV 386 (587)
Q Consensus 319 g~I~iWd~~~-------~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D----g~I~vWd~~t~~~i~~~~~~-~~~~~ 386 (587)
|.|+||++.. ....+..+..|...|.+++|+|++++|++++.+ +.|.+|| +++.+..+..+ ..+.+
T Consensus 88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~ 165 (615)
T 1pgu_A 88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINA 165 (615)
T ss_dssp SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEE
T ss_pred CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEE
Confidence 9999999931 347778888999999999999999999999988 6888888 56777777644 34556
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC---CeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEE
Q 007855 387 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG---AVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIK 462 (587)
Q Consensus 387 ~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~---~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~ 462 (587)
+.|.+++ ..++++++.|+.|++||+.+++.+..+..|.. .|++++|+|+ +++|++++.|+.|++||+.++..+.
T Consensus 166 ~~~~~~~--~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 243 (615)
T 1pgu_A 166 CHLKQSR--PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 243 (615)
T ss_dssp EEECSSS--SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred EEECCCC--CcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence 7777754 24899999999999999999999999999999 9999999999 9999999999999999999999888
Q ss_pred Eeec---CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCc
Q 007855 463 YISE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 539 (587)
Q Consensus 463 ~~~~---~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~ 539 (587)
.+.. .|...|.+++|+ ++.+|++++.|+.|++||+.++..+....... ......+.++.|+ ++.+|++++.+|.
T Consensus 244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~~~~g~ 320 (615)
T 1pgu_A 244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDK-QQLGNQQVGVVAT-GNGRIISLSLDGT 320 (615)
T ss_dssp ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCT-TCGGGCEEEEEEE-ETTEEEEEETTSC
T ss_pred EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCC-CcccCceeEEEeC-CCCeEEEEECCCC
Confidence 8844 688999999999 99999999999999999998876554333221 1223556777886 8999999999999
Q ss_pred EEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 540 CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 540 I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|++||+.+++.+..+.+|...|.+++| | + |++++.||.|++||
T Consensus 321 i~~~d~~~~~~~~~~~~~~~~v~~~~~-~-~---l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 321 LNFYELGHDEVLKTISGHNKGITALTV-N-P---LISGSYDGRIMEWS 363 (615)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEET-T-T---TEEEETTSCEEETT
T ss_pred EEEEECCCCcEEEEEeCCCCCEEEEEe-c-C---cEEECCCCeEEEEE
Confidence 999999999999999999999999999 8 4 88888888888886
No 70
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=3.2e-32 Score=278.30 Aligned_cols=297 Identities=19% Similarity=0.331 Sum_probs=246.7
Q ss_pred ccCCCCCCCCcccccc-ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEE
Q 007855 237 DKGNAGGEKGEHVEDK-STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA 315 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sg 315 (587)
.+++.+.+......+. ..+.++...|..+|.|-...... ....+.+++.+|...|++++|+|+ +.+|++|
T Consensus 34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~--------~~~~~~~~l~~h~~~V~~~~~s~d-g~~l~s~ 104 (340)
T 4aow_A 34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET--------NYGIPQRALRGHSHFVSDVVISSD-GQFALSG 104 (340)
T ss_dssp ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS--------CSEEEEEEECCCSSCEEEEEECTT-SSEEEEE
T ss_pred ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc--------ccceeeEEEeCCCCCEEEEEECCC-CCEEEEE
Confidence 4578877777776654 57889999999999997765321 123457789999999999999999 9999999
Q ss_pred eCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC--CcceEEEEccCC
Q 007855 316 GMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDD 393 (587)
Q Consensus 316 s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~ 393 (587)
+.|+.|++|+. ...........+...+..+.+++++.+|++++.|+.+++||+............ .....+.+.+..
T Consensus 105 ~~d~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~ 183 (340)
T 4aow_A 105 SWDGTLRLWDL-TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS 183 (340)
T ss_dssp ETTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS
T ss_pred cccccceEEee-cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC
Confidence 99999999999 677888888889999999999999999999999999999999877665544333 344566676654
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCccee
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMP 473 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~ 473 (587)
. ..++++++.|+.|++||+++++.+..+.+|.+.|++++|+|++++|++++.|+.|++||++....+..+. +...+.
T Consensus 184 ~-~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~ 260 (340)
T 4aow_A 184 S-NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLD--GGDIIN 260 (340)
T ss_dssp S-SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEE--CSSCEE
T ss_pred C-CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeec--CCceEE
Confidence 3 3578899999999999999999999999999999999999999999999999999999999999888774 456899
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce------ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR------FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 474 ~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~------~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
+++|+|++.++ +++.|+.|++||+++...+..... ..+| ...|++++|+|+|++|++|+.||.|+|||+.+
T Consensus 261 ~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~t 337 (340)
T 4aow_A 261 ALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAE--PPQCTSLAWSADGQTLFAGYTDNLVRVWQVTI 337 (340)
T ss_dssp EEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CC--CCCEEEEEECTTSSEEEEEETTSCEEEEEEEC
T ss_pred eeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCC--CCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC
Confidence 99999988655 556699999999987655433221 2233 56789999999999999999999999999998
Q ss_pred Ce
Q 007855 548 CK 549 (587)
Q Consensus 548 ~~ 549 (587)
|+
T Consensus 338 Gt 339 (340)
T 4aow_A 338 GT 339 (340)
T ss_dssp --
T ss_pred cC
Confidence 85
No 71
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=4.3e-33 Score=296.43 Aligned_cols=279 Identities=16% Similarity=0.306 Sum_probs=221.3
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe-----------eeEEEcccC------------CceeeEEEec
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK-----------CMRTYMGHS------------KAVRDISFCN 350 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-----------~~~~~~~h~------------~~V~~l~fs~ 350 (587)
.|.+.|++|+|+|+ +.+|++|+.||.|+||++ ..+. ++..+.+|. ..|++++|+|
T Consensus 26 ~~~~~V~~v~~s~~-g~~la~g~~dg~v~iw~~-~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~ 103 (447)
T 3dw8_B 26 AEADIISTVEFNHS-GELLATGDKGGRVVIFQQ-EQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLP 103 (447)
T ss_dssp CGGGSEEEEEECSS-SSEEEEEETTSEEEEEEE-CC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECC
T ss_pred cccCcEEEEEECCC-CCEEEEEcCCCeEEEEEe-cCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcC
Confidence 36789999999998 999999999999999999 4444 578889998 8899999999
Q ss_pred CC--CeEEEEeCCCeEEEEECCCCcEE---------------------------------------EEee--cCCcceEE
Q 007855 351 DG--TKFLTASYDKNIKYWDTETGQVI---------------------------------------RTFS--TGKIPYVV 387 (587)
Q Consensus 351 dg--~~l~s~s~Dg~I~vWd~~t~~~i---------------------------------------~~~~--~~~~~~~~ 387 (587)
++ .+|++++.|+.|++||+.++... ..+. +...+.++
T Consensus 104 ~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 104 QKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp CCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred CCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 98 79999999999999999875442 1222 33456678
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEE-------EccCCCCeeEEEEecCC-CEEEEEECCCCEEEEECCCC
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQE-------YDQHLGAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIP 458 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~-------~~~h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~ 458 (587)
+|++++ .+|++| .|+.|++||+++ +..+.. +..|...|++++|+|++ .+|++++.||.|++||++..
T Consensus 184 ~~~~~~---~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 184 SINSDY---ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp EECTTS---SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEcCCC---CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 888754 578888 899999999994 444442 55799999999999998 99999999999999999987
Q ss_pred eE----EEEeecCCCc------------ceeEEEEeCCCCEEEEEECCCeEEEEEcCC-ceeecccceeccccccc----
Q 007855 459 VV----IKYISEPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAG---- 517 (587)
Q Consensus 459 ~~----~~~~~~~~~~------------~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~---- 517 (587)
.. +..+. .+.. .|.+++|+|++++|++++. +.|++||++. +..+ ..+.+|....
T Consensus 260 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~---~~~~~~~~~~~~l~ 334 (447)
T 3dw8_B 260 ALCDRHSKLFE-EPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV---ETYQVHEYLRSKLC 334 (447)
T ss_dssp SSSCTTCEEEC-CC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS---CCEESCGGGTTTHH
T ss_pred ccccceeeEec-cCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc---ceeecccccccccc
Confidence 75 44443 3443 8999999999999999998 9999999986 4433 3344442110
Q ss_pred ---------ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-------------------------------
Q 007855 518 ---------YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------------------------- 557 (587)
Q Consensus 518 ---------~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h------------------------------- 557 (587)
.+..++|+|++++|++|+.||.|+|||+.+++.+ .+.+|
T Consensus 335 ~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 335 SLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI-TLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp HHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE-EEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce-eeeecccccccccccCCccccccCCccccccccccc
Confidence 1234899999999999999999999999998876 33333
Q ss_pred --CCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 558 --EGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 558 --~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
...|..++|+| ++.+|++++.++ +.+|
T Consensus 414 ~~~~~i~~~~~~p-~~~~la~~~~~~-~~~~ 442 (447)
T 3dw8_B 414 DFNKKILHTAWHP-KENIIAVATTNN-LYIF 442 (447)
T ss_dssp CTTSCCCEEEECS-SSSEEEEECSSC-EEEE
T ss_pred ccCCceeEEEECC-CCCEEEEEecce-eeee
Confidence 34688999999 777899888776 6555
No 72
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5e-33 Score=314.45 Aligned_cols=295 Identities=19% Similarity=0.338 Sum_probs=239.2
Q ss_pred cCCCCCCCCccccc-cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe
Q 007855 238 KGNAGGEKGEHVED-KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG 316 (587)
Q Consensus 238 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs 316 (587)
.+|...+....... ...+..+...|..+|.|....... ......+.+.+|...|++++|+|+ +.+|+||+
T Consensus 379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~--------~~~~~~~~~~~h~~~v~~v~~s~~-g~~l~sgs 449 (694)
T 3dm0_A 379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK--------AYGVAQRRLTGHSHFVEDVVLSSD-GQFALSGS 449 (694)
T ss_dssp ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT--------CSCEEEEEEECCSSCEEEEEECTT-SSEEEEEE
T ss_pred ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc--------ccccccceecCCCCcEEEEEECCC-CCEEEEEe
Confidence 35555555444443 346788999999999997654321 123456789999999999999999 99999999
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee----cCCcceEEEEccC
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS----TGKIPYVVKLNPD 392 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~----~~~~~~~~~~~~~ 392 (587)
.||+|+|||+ .++.+++.+.+|...|.+++|+|++++|++|+.|++|+|||+.......... +...+.+++|+++
T Consensus 450 ~Dg~v~vwd~-~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 528 (694)
T 3dm0_A 450 WDGELRLWDL-AAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPN 528 (694)
T ss_dssp TTSEEEEEET-TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSC
T ss_pred CCCcEEEEEC-CCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCC
Confidence 9999999999 7889999999999999999999999999999999999999987654443332 2233567778776
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcce
Q 007855 393 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 393 ~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
.. ..+|++|+.|+.|++||++++++...+.+|.+.|++++|+|++++|++++.||.|++||++++..+..+. +...+
T Consensus 529 ~~-~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v 605 (694)
T 3dm0_A 529 TL-QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVI 605 (694)
T ss_dssp SS-SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB--CSSCE
T ss_pred CC-cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec--CCCcE
Confidence 42 3589999999999999999999999999999999999999999999999999999999999998876663 45679
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecc--------------cccccceEEEEEcCCCCEEEEEcCCC
Q 007855 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAG--------------HIVAGYACQVNFSPDGRFVMSGDGEG 538 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~--------------~~~~~~i~~l~~spdg~~L~sgs~dG 538 (587)
.+++|+|++.+|++++ ++.|++||+.++..+........ ......+++++|||+|++|++|+.||
T Consensus 606 ~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg 684 (694)
T 3dm0_A 606 HALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDG 684 (694)
T ss_dssp EEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTS
T ss_pred EEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCC
Confidence 9999999998887766 56699999988765543321100 00112467899999999999999999
Q ss_pred cEEEEeCC
Q 007855 539 KCWFWDWK 546 (587)
Q Consensus 539 ~I~vwd~~ 546 (587)
.|+||++.
T Consensus 685 ~i~iW~i~ 692 (694)
T 3dm0_A 685 VIRVWGIG 692 (694)
T ss_dssp EEEEEEC-
T ss_pred eEEEEecc
Confidence 99999985
No 73
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-32 Score=294.17 Aligned_cols=273 Identities=25% Similarity=0.484 Sum_probs=235.6
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
....+|...|+|+.| + +.+|++|+.||.|++||+ .+++++..+.+|...|.+++| ++++|++|+.||.|++||+
T Consensus 127 ~~~~~~~~~v~~~~~--d-~~~l~~g~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--D-DQKIVSGLRDNTIKIWDK-NTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV 200 (435)
T ss_dssp ECCCSSCCCEEEEEC--C-SSEEEEEESSSCEEEEES-SSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred ecccCCCCcEEEEEE--C-CCEEEEEeCCCeEEEEeC-CCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence 344578889999988 4 789999999999999999 788999999999999999999 7889999999999999999
Q ss_pred CCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE---EEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 370 ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT---QEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 370 ~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~---~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
.+++.+..+..+.. .+.++...+ .++++|+.||.|++||+.++... ..+.+|...|.++.| ++++|++++.
T Consensus 201 ~~~~~~~~~~~h~~-~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCE-AVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCS-CEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCC-cEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 99999988875433 233333332 48999999999999999988655 677899999999999 6789999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
||.|++||++++..+..+. .|...|.++.++ +.+|++++.||.|++||++++..+ ..+.+| ...+.+++|
T Consensus 275 dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~---~~~~~h--~~~v~~~~~-- 344 (435)
T 1p22_A 275 DRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACL---RVLEGH--EELVRCIRF-- 344 (435)
T ss_dssp TSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEE---EEECCC--SSCEEEEEC--
T ss_pred CCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEE---EEEeCC--cCcEEEEEe--
Confidence 9999999999998888775 588889999884 689999999999999999887654 344555 466878888
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCe---------eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCK---------VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~---------~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++.+|++|+.||.|++||+.++. ++..+.+|.+.|++++| ++.+|++++.||.|+|||
T Consensus 345 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~---~~~~l~s~s~Dg~i~iwd 411 (435)
T 1p22_A 345 DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWD 411 (435)
T ss_dssp CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE---CSSCEEECCSSSEEEEEC
T ss_pred cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe---CCCEEEEEeCCCEEEEEE
Confidence 78999999999999999997766 88899999999999999 346799999999999997
No 74
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.6e-33 Score=292.98 Aligned_cols=271 Identities=17% Similarity=0.212 Sum_probs=199.0
Q ss_pred EEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC------CCeEEEEECCCCcEE
Q 007855 302 IRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVI 375 (587)
Q Consensus 302 l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~------Dg~I~vWd~~t~~~i 375 (587)
+.+.+. .+++.++.+.....|++ ... ....|...|++|+|+|||++|++++. |+.|++|+..++...
T Consensus 11 ~d~g~~--~~~~~~~g~~~~~~w~~-p~~----~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~ 83 (357)
T 4g56_B 11 VDLGTE--NLYFQSNGSSKGSAWGR-PVT----APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN 83 (357)
T ss_dssp ------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C
T ss_pred CCCCcc--ceEEecCCCccccccCC-CCC----CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc
Confidence 344444 45566666788899998 322 23479999999999999999999997 788999998877543
Q ss_pred -----EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE----EEEccCCCCeeEEEEecCCCEEEEEEC
Q 007855 376 -----RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT----QEYDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 376 -----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~----~~~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
........+.+++|.+++ .+++++.||.|++||+.+++.. ....+|...|++++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~V~~~~~s~d~----~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~ 159 (357)
T 4g56_B 84 ESLCTAGVQTEAGVTDVAWVSEK----GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK 159 (357)
T ss_dssp GGGCSEEEECSSCEEEEEEETTT----EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET
T ss_pred eeEecccCCCCCCEEEEEEcCCC----CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC
Confidence 223344557788888854 4778899999999999887643 234579999999999999999999999
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
|+.|++||++++..+..+. .|...|.+++|+|++. +|++++.|+.|++||++++...... ..+.....+.+++|+
T Consensus 160 dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~~~v~~v~~s 235 (357)
T 4g56_B 160 DFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASDTIPTSVTWH 235 (357)
T ss_dssp TSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCCSCEEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eeccccccccchhhh
Confidence 9999999999998887775 5889999999999874 7899999999999999876544322 222335678899999
Q ss_pred CC-CCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 526 PD-GRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 526 pd-g~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|+ +.+|++|+.|+.|++||+++++++..+.+|...|++++|+|++..+|++|+.||+|+|||
T Consensus 236 p~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd 298 (357)
T 4g56_B 236 PEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLD 298 (357)
T ss_dssp TTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEEC
T ss_pred hcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEE
Confidence 97 568999999999999999999999999999999999999997677899999999999998
No 75
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=5.3e-32 Score=289.21 Aligned_cols=274 Identities=24% Similarity=0.482 Sum_probs=237.4
Q ss_pred eEEEEcCCCCCe-EEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 288 LVHTWSGHTKGV-SAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 288 ~i~tl~gH~~~V-~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
....+.+|.+.| +|+.+ + +++|++|+.||+|++||+ .+++++..+.+|...|.+++|+ +.+|++|+.||+|++
T Consensus 110 ~~~~l~~h~~~v~~~~~~--~-g~~l~sg~~dg~i~vwd~-~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~v 183 (445)
T 2ovr_B 110 SPKVLKGHDDHVITCLQF--C-GNRIVSGSDDNTLKVWSA-VTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKV 183 (445)
T ss_dssp CCEEEECSTTSCEEEEEE--E-TTEEEEEETTSCEEEEET-TTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred eeEEecccCCCcEEEEEE--c-CCEEEEEECCCcEEEEEC-CCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEE
Confidence 456789999975 55555 4 789999999999999999 7889999999999999999997 569999999999999
Q ss_pred EECCCCcEEEEeecCCc-ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 367 WDTETGQVIRTFSTGKI-PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~-~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
||+.+++.+..+..+.. +.++.+. +..+++|+.||.|++||+.+++.+..+.+|...|.++.| ++.+|++++
T Consensus 184 wd~~~~~~~~~~~~h~~~v~~~~~~-----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 184 WNAETGECIHTLYGHTSTVRCMHLH-----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEE-----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEE
T ss_pred EECCcCcEEEEECCCCCcEEEEEec-----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEc
Confidence 99999999988875433 3444443 257999999999999999999999999999999999999 688999999
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEc
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
.||.|++||++++..+..+. .|...|.++.+ ++.+|++++.|+.|++||+.++..+. .+.+| ...+.++.+
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~--~~~v~~~~~- 327 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIH---TLTGH--QSLTSGMEL- 327 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEE---EECCC--CSCEEEEEE-
T ss_pred CCCEEEEEECCCCcEeEEec-CCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEE---EEcCC--cccEEEEEE-
Confidence 99999999999998887775 58889999998 78999999999999999998876553 34445 345655655
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 526 PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 526 pdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++.+|++|+.||.|++||+.+++.+..+.. |...|++++|++ .+|++++.||.|+|||
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd 388 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWD 388 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEE
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC---CEEEEEeCCCeEEEEE
Confidence 577999999999999999999999999987 888999999964 6999999999999997
No 76
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.1e-31 Score=272.35 Aligned_cols=284 Identities=21% Similarity=0.415 Sum_probs=237.3
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 318 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D 318 (587)
++...+......+...+.+....|...+.|-.. ..++...+.+|...|.+++|+|+ +++|++|+.|
T Consensus 21 gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~-------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~d 86 (312)
T 4ery_A 21 GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY-------------DGKFEKTISGHKLGISDVAWSSD-SNLLVSASDD 86 (312)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-------------TCCEEEEECCCSSCEEEEEECTT-SSEEEEEETT
T ss_pred ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCC-------------CcccchhhccCCCceEEEEEcCC-CCEEEEECCC
Confidence 444444455556666777888888888888432 24567789999999999999999 8999999999
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEccCCCCCc
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDDDKQN 397 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~~~~~ 397 (587)
+.|+|||+ .+++++..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+. .+..+.+.+++ .
T Consensus 87 ~~i~vwd~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~---~ 162 (312)
T 4ery_A 87 KTLKIWDV-SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG---S 162 (312)
T ss_dssp SEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS---S
T ss_pred CEEEEEEC-CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC---C
Confidence 99999999 7888999999999999999999999999999999999999999999998887554 45567777644 5
Q ss_pred EEEEEeCCCcEEEEeCCCCcEEEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcc---ee
Q 007855 398 ILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS---MP 473 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~---i~ 473 (587)
+|++|+.||.|++||+++++.+..+. .+...+.+++|+|++++|++++.|+.|++||++++..+..+.. |... +.
T Consensus 163 ~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~ 241 (312)
T 4ery_A 163 LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIF 241 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECS-SCCSSSCCC
T ss_pred EEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEe-cCCceEEEE
Confidence 89999999999999999998877764 4667899999999999999999999999999999988877653 4333 23
Q ss_pred EEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc--CCCcEEEEeCC
Q 007855 474 SISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD--GEGKCWFWDWK 546 (587)
Q Consensus 474 ~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs--~dG~I~vwd~~ 546 (587)
.....+++.+|++++.||.|++||+.++..+ ..+.+| ...+.+++|+|++.+|++++ .|+.|++|+..
T Consensus 242 ~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~---~~~~~h--~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 242 ANFSVTGGKWIVSGSEDNLVYIWNLQTKEIV---QKLQGH--TDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp EEEECSSSCEEEECCTTSCEEEEETTTCCEE---EEECCC--SSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred EEEEeCCCcEEEEECCCCEEEEEECCCchhh---hhhhcc--CCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 3333467899999999999999999887554 445566 56788999999999999986 69999999864
No 77
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-33 Score=323.16 Aligned_cols=333 Identities=10% Similarity=0.096 Sum_probs=242.8
Q ss_pred CccccccceEeecccccccceeeeeCCCCcccCCCcccCCC--ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEE
Q 007855 246 GEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPK--RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 323 (587)
Q Consensus 246 ~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~--~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 323 (587)
.....+...+.+....|..+|.|-........ .. ++. +....+.+|.+.|++|+|+|+++.+|++|+.||.| |
T Consensus 103 ~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~---~~-i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-l 177 (902)
T 2oaj_A 103 SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS---FK-LDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-T 177 (902)
T ss_dssp EEECCTTCSEEEEEETTSCEEEEETTTTEEEE---EE-ECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-E
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcccc---ce-eccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-E
Confidence 33455666677778889999999765432100 00 000 00023578999999999999756899999999999 9
Q ss_pred EecCCCCeeeEEEccc------------------CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE--ee----
Q 007855 324 WDVFNSGKCMRTYMGH------------------SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT--FS---- 379 (587)
Q Consensus 324 Wd~~~~~~~~~~~~~h------------------~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~--~~---- 379 (587)
||+ ..++++..+..| ...|++++|+|+|.+|++++.||.|+|||+.+++++.. +.
T Consensus 178 Wd~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~ 256 (902)
T 2oaj_A 178 YSL-VENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEI 256 (902)
T ss_dssp EET-TTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCT
T ss_pred EEC-CCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeeccccc
Confidence 999 778888888766 57799999999999999999999999999999887653 21
Q ss_pred c-------------CCcceEEEEccCC--CC-------------------------------------------------
Q 007855 380 T-------------GKIPYVVKLNPDD--DK------------------------------------------------- 395 (587)
Q Consensus 380 ~-------------~~~~~~~~~~~~~--~~------------------------------------------------- 395 (587)
. ...+..++|.+.. +.
T Consensus 257 ~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 336 (902)
T 2oaj_A 257 NVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKI 336 (902)
T ss_dssp TSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEE
T ss_pred CCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEE
Confidence 0 1123334443210 00
Q ss_pred ---------------------------CcEEEEEeCCCcEEEEeCCCCcEEEE---------------------------
Q 007855 396 ---------------------------QNILLAGMSDKKIVQWDMNTKEITQE--------------------------- 421 (587)
Q Consensus 396 ---------------------------~~~l~sg~~dg~I~iwD~~t~~~~~~--------------------------- 421 (587)
...+++++.|+.|++||+.++.....
T Consensus 337 ~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~ 416 (902)
T 2oaj_A 337 FPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKL 416 (902)
T ss_dssp ECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHH
T ss_pred EecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHH
Confidence 11345555667778888766532211
Q ss_pred --------------EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEE----EEee------cCCCcceeEEEE
Q 007855 422 --------------YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVI----KYIS------EPHMHSMPSISL 477 (587)
Q Consensus 422 --------------~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~----~~~~------~~~~~~i~~i~~ 477 (587)
+.+|...+.+++|+|++++|++|+.|++|++||+..+... ..+. ..|...|.+++|
T Consensus 417 w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svaf 496 (902)
T 2oaj_A 417 WLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISF 496 (902)
T ss_dssp HHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEE
T ss_pred HHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEe
Confidence 1223334444555788999999999999999999765311 0110 157789999999
Q ss_pred eCCCCEEEEEECCCeEEEEEcCCcee------------------------------------------ecccceeccccc
Q 007855 478 HPNTNWLAAQSLDNQILIYSTRERFQ------------------------------------------LNKKKRFAGHIV 515 (587)
Q Consensus 478 sp~g~~l~~~s~dg~I~iwd~~~~~~------------------------------------------~~~~~~~~~~~~ 515 (587)
+|++++||+|+.||+|+||++.++.. +.....+.+|
T Consensus 497 spdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h-- 574 (902)
T 2oaj_A 497 AAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN-- 574 (902)
T ss_dssp ETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC--
T ss_pred cCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC--
Confidence 99999999999999999999876521 0113344555
Q ss_pred ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEE-----Ee-cCCCCEEEEEEc-----CCC--CCEEEEEECCCc
Q 007855 516 AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRT-----LK-CHEGVCIGCEWH-----PLE--QSKVATCGWDGL 582 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~-----l~-~h~~~V~~v~~s-----p~~--~~~l~s~g~DG~ 582 (587)
.+.|++++|||+| +||+|+.||.|+|||+.+...+.. +. +|...|++++|+ |++ +.+|++++.||+
T Consensus 575 ~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~t 653 (902)
T 2oaj_A 575 KGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGE 653 (902)
T ss_dssp SCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSE
T ss_pred CCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCc
Confidence 5789999999999 999999999999999988877642 22 788999999999 843 479999999999
Q ss_pred EEEcC
Q 007855 583 IKYWD 587 (587)
Q Consensus 583 I~iWD 587 (587)
|++||
T Consensus 654 v~~wd 658 (902)
T 2oaj_A 654 VITYK 658 (902)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 78
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=8.9e-33 Score=281.58 Aligned_cols=290 Identities=17% Similarity=0.244 Sum_probs=216.9
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC----eeeEEEcccCCceeeEEEec--CCCeEEEEeCCC
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG----KCMRTYMGHSKAVRDISFCN--DGTKFLTASYDK 362 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~Dg 362 (587)
.+.+.+|.+.|++|+|+|+ +.+|++|+.||.|+||++ ..+ ..+..+.+|...|++++|+| ++.+|++++.||
T Consensus 4 ~~~~~gH~~~v~~~~~~~~-~~~l~~~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg 81 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFY-GRHVATCSSDQHIKVFKL-DKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK 81 (351)
T ss_dssp CCEECCCSSCEEEEEECSS-SSEEEEEETTSEEEEEEE-CSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred cccCcccccceeEEEEcCC-CCEEEEeeCCCeEEEEEC-CCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC
Confidence 3467899999999999998 999999999999999999 443 56778889999999999999 699999999999
Q ss_pred eEEEEECCCC---------cEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc---------
Q 007855 363 NIKYWDTETG---------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--------- 423 (587)
Q Consensus 363 ~I~vWd~~t~---------~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~--------- 423 (587)
.|++||+.++ +.+..+.. ...+..+.|.+.. .+.+|++++.||.|++||+++++.+..+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 160 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAH-LGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS 160 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCC-CCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence 9999999987 45566553 3455677777751 13689999999999999999876443322
Q ss_pred ----cCCCCeeEEEEecC---CCEEEEEECCCCEEEEECCCCeEE-EEeecCCCcceeEEEEeCCC----CEEEEEECCC
Q 007855 424 ----QHLGAVNTITFVDN---NRRFVTSSDDKSLRVWEFGIPVVI-KYISEPHMHSMPSISLHPNT----NWLAAQSLDN 491 (587)
Q Consensus 424 ----~h~~~I~~i~~sp~---~~~l~s~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~i~~i~~sp~g----~~l~~~s~dg 491 (587)
.|...+.++.|+|+ +..|++++.++.+.+|+....... ......|...|.+++|+|++ .+|++++.||
T Consensus 161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg 240 (351)
T 3f3f_A 161 IPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDG 240 (351)
T ss_dssp CCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTS
T ss_pred cccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCC
Confidence 57889999999997 899999999999988888776542 22234588899999999998 8999999999
Q ss_pred eEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEc
Q 007855 492 QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg----s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~s 567 (587)
.|++||++......... .. ........+++...++..+ .....+.+|+....+++..+.+|...|++++|+
T Consensus 241 ~i~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s 315 (351)
T 3f3f_A 241 RIRIFKITEKLSPLASE---ES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWN 315 (351)
T ss_dssp CEEEEEEEECC--------------------------------------------CCSEEEEEEEEECTTSSCEEEEEEC
T ss_pred eEEEEeCCCCcCccccC---Cc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEc
Confidence 99999998653322111 11 1112223334444444333 344567777777888999999999999999999
Q ss_pred CCCCCEEEEEECCCcEEEcC
Q 007855 568 PLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 568 p~~~~~l~s~g~DG~I~iWD 587 (587)
| ++.+|++++.||.|+|||
T Consensus 316 ~-~~~~l~s~~~dg~v~iw~ 334 (351)
T 3f3f_A 316 L-TGTILSSAGDDGKVRLWK 334 (351)
T ss_dssp S-SSCCEEEEETTSCEEEEE
T ss_pred C-CCCEEEEecCCCcEEEEe
Confidence 9 778999999999999996
No 79
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-32 Score=285.07 Aligned_cols=260 Identities=21% Similarity=0.343 Sum_probs=214.1
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-CCeeeEEEcccCCceeeEEEecC--CCeEEEEeCCCe
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKN 363 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fs~d--g~~l~s~s~Dg~ 363 (587)
+++.++.+|...|++++|+|+ +.+|++|+.||.|+||++.. ....+..+.+|...|++++|+++ +.+|++++.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~-~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSS-SSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCC-CCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCE
Confidence 456788999999999999999 89999999999999999932 55777889999999999999976 999999999999
Q ss_pred EEEEECCCCc--EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--cEEEEEccCCCCeeEEEEec--
Q 007855 364 IKYWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD-- 436 (587)
Q Consensus 364 I~vWd~~t~~--~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~~~~~~~~h~~~I~~i~~sp-- 436 (587)
|++||+.+++ .+..+. ....+.++.|+++. .+.+|++++.|+.|++||++++ .....+..|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 159 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT 159 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCC-CCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence 9999999987 555554 34456677887752 1368999999999999999987 34556778999999999999
Q ss_pred -----------CCCEEEEEECCCCEEEEECCCCe---EEEEeecCCCcceeEEEEeCC---CCEEEEEECCCeEEEEEcC
Q 007855 437 -----------NNRRFVTSSDDKSLRVWEFGIPV---VIKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 437 -----------~~~~l~s~s~Dg~I~iwd~~~~~---~~~~~~~~~~~~i~~i~~sp~---g~~l~~~s~dg~I~iwd~~ 499 (587)
++.+|++++.|+.|++||++... ........|...|.+++|+|+ +.+|++++.||.|++||+.
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~ 239 (379)
T 3jrp_A 160 IEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQD 239 (379)
T ss_dssp ----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEES
T ss_pred ccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCC
Confidence 69999999999999999997653 222233468889999999999 8999999999999999998
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
...................+.+++|+|+|++|++++.||.|++|++...
T Consensus 240 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 240 NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp STTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 7532222222233223567899999999999999999999999999754
No 80
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.1e-32 Score=276.64 Aligned_cols=251 Identities=20% Similarity=0.287 Sum_probs=204.6
Q ss_pred eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC--cEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 333 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 333 ~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~--~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
+..+.+|...|++++|+|+|++|++|+.|++|+|||+..+ +++..+..+ ..+.+++|.+.. .+.+|++|+.|+.|+
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~-~g~~l~s~s~D~~v~ 80 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVM 80 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGG-GCSEEEEEETTTEEE
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCC-cCCEEEEEcCCCEEE
Confidence 3457799999999999999999999999999999999753 566666644 345567776531 246899999999999
Q ss_pred EEeCCCCc--EEEEEccCCCCeeEEEEecC--CCEEEEEECCCCEEEEECCCCeE-EEEeecCCCcceeEEEEeCC----
Q 007855 410 QWDMNTKE--ITQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHPN---- 480 (587)
Q Consensus 410 iwD~~t~~--~~~~~~~h~~~I~~i~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp~---- 480 (587)
+||+.++. .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .......|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 99999874 56678889999999999997 88999999999999999986531 12233468889999999997
Q ss_pred ---------CCEEEEEECCCeEEEEEcCCcee-ecccceecccccccceEEEEEcCCC---CEEEEEcCCCcEEEEeCCC
Q 007855 481 ---------TNWLAAQSLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 481 ---------g~~l~~~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdg---~~L~sgs~dG~I~vwd~~t 547 (587)
+++|++++.|+.|++||+++... ......+.+| ...|.+++|+|++ .+|++|+.|+.|+|||+.+
T Consensus 161 ~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H--~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~ 238 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDN 238 (297)
T ss_dssp ---------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred cccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCC--CCceEEEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence 57999999999999999876532 1123456667 5779999999985 8999999999999999977
Q ss_pred Ce---eEEEE--ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 548 CK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 548 ~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.. ....+ ..|...|.+++|+| ++.+|++++.||.|+||+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~las~~~D~~v~lw~ 282 (297)
T 2pm7_B 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (297)
T ss_dssp TTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEETTSCEEEEE
T ss_pred CCCccceeeeecccCCCcEEEEEECC-CCCEEEEEcCCCcEEEEE
Confidence 43 12233 46788999999999 778999999999999995
No 81
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=7.5e-33 Score=291.74 Aligned_cols=282 Identities=19% Similarity=0.287 Sum_probs=230.4
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe---eeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCC-
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK---CMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG- 372 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~- 372 (587)
....++++|+...++++++.||.|+||++...+. .+..+.+|...|++++|+| ++.+|++|+.||.|+|||+.++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~ 115 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG 115 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence 4556889998455666789999999999944443 4556789999999999999 9999999999999999999987
Q ss_pred ------cEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE--ccCCCCeeEEEEecCCCEEEE
Q 007855 373 ------QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDNNRRFVT 443 (587)
Q Consensus 373 ------~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~--~~h~~~I~~i~~sp~~~~l~s 443 (587)
+.+..+.. ...+.++.|++++ .++|++|+.|+.|++||+.+++.+..+ ..|...|.+++|+|++++|++
T Consensus 116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~--~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 193 (402)
T 2aq5_A 116 LVLPLREPVITLEGHTKRVGIVAWHPTA--QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICT 193 (402)
T ss_dssp CSSCBCSCSEEEECCSSCEEEEEECSSB--TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEE
T ss_pred CccccCCceEEecCCCCeEEEEEECcCC--CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEE
Confidence 45666653 3456678887754 368999999999999999999999999 889999999999999999999
Q ss_pred EECCCCEEEEECCCCeEEEEeecCCCcc-eeEEEEeCCCCEEEEE---ECCCeEEEEEcCCceeecccceecccccccce
Q 007855 444 SSDDKSLRVWEFGIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQ---SLDNQILIYSTRERFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 444 ~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~~~---s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i 519 (587)
++.|+.|++||++++..+..+...|... +.++.|+|++.+|+++ +.|+.|++||+++.........+ .+ ...+
T Consensus 194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~--~~~v 270 (402)
T 2aq5_A 194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DT--SSGV 270 (402)
T ss_dssp EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CC--CSSC
T ss_pred EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cC--CCce
Confidence 9999999999999999888874456554 8999999999999999 78999999999875432212211 12 3568
Q ss_pred EEEEEcCCCCEEE-EEcCCCcEEEEeCCCCee-EEEEec--CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 520 CQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV-FRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 520 ~~l~~spdg~~L~-sgs~dG~I~vwd~~t~~~-~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++|+|++++|+ +|+.||.|++||+.+++. +..+.. |...|.+++|+| ++.++++ .++.+++|+
T Consensus 271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp-~~~~~~s--~~~~~~~~~ 339 (402)
T 2aq5_A 271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMP-KRGLEVN--KCEIARFYK 339 (402)
T ss_dssp EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECC-GGGSCGG--GTEEEEEEE
T ss_pred eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEec-cccccee--cceeEEEEE
Confidence 8899999999986 566899999999998874 555544 458999999999 5555554 567899995
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-31 Score=280.61 Aligned_cols=297 Identities=9% Similarity=0.143 Sum_probs=240.7
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccC---CC---cEE
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK---YG---HLI 312 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~---~g---~~L 312 (587)
++...+......+ .+.+....|..++.|-...... ..+.+++..+.+|...|++++|+|+ ++ .+|
T Consensus 14 ~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l 84 (397)
T 1sq9_A 14 AHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN-------ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV 84 (397)
T ss_dssp CSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTT-------CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred hhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCccc-------ccCCCcceEEecCCCcEEEEEEecccccCCccccEE
Confidence 4444444444444 5667788899999997655331 2245578889999999999999997 46 899
Q ss_pred EEEeCCCeEEEEecCCCCee-----eEEEccc-----CCceeeEEEe----cCCCe-EEEEeCCCeEEEEECCC------
Q 007855 313 LSAGMDTKVKIWDVFNSGKC-----MRTYMGH-----SKAVRDISFC----NDGTK-FLTASYDKNIKYWDTET------ 371 (587)
Q Consensus 313 ~sgs~Dg~I~iWd~~~~~~~-----~~~~~~h-----~~~V~~l~fs----~dg~~-l~s~s~Dg~I~vWd~~t------ 371 (587)
++++.||.|++|++ ..+.. +..+..| ...|.+++|+ |++.+ |++++.||.|++||+.+
T Consensus 85 ~s~~~dg~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 163 (397)
T 1sq9_A 85 ATTSFSGDLLFYRI-TREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN 163 (397)
T ss_dssp EEEETTSCEEEEEE-EECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred EEEcCCCCEEEEEc-cCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence 99999999999999 55665 7888888 5999999999 99999 99999999999999998
Q ss_pred CcEEE-----Eee--------cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc---C---CCCeeEE
Q 007855 372 GQVIR-----TFS--------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ---H---LGAVNTI 432 (587)
Q Consensus 372 ~~~i~-----~~~--------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~---h---~~~I~~i 432 (587)
++.+. .+. ....+.++.+.+++ +|++|+.|+.|++||+++++.+..+.. | ...|.++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i 239 (397)
T 1sq9_A 164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG----LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV 239 (397)
T ss_dssp HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS----EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred cceeeccCcceeeeeeccccCCCCCceEEEECCCc----eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence 65554 553 24556778888743 899999999999999999999999998 9 9999999
Q ss_pred EEecCCCEEEEEECC---CCEEEEECCCCeEEEEeecC------------CCcceeEEEEeCCCCEEEEEECCCeEEEEE
Q 007855 433 TFVDNNRRFVTSSDD---KSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 433 ~~sp~~~~l~s~s~D---g~I~iwd~~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
+|+|++.+|++++.| +.|++||+++...+..+..+ |...|.+++|+|++.+|++++.|+.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 99999999999888777532 788999999999999999999999999999
Q ss_pred cCCceeecccceec---cc-------------ccccceEEEEEcCCC----------CEEEEEcCCCcEEEEeCCCCe
Q 007855 498 TRERFQLNKKKRFA---GH-------------IVAGYACQVNFSPDG----------RFVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 498 ~~~~~~~~~~~~~~---~~-------------~~~~~i~~l~~spdg----------~~L~sgs~dG~I~vwd~~t~~ 549 (587)
+.++..+....... +| .....|.+++|+|+| ++|++|+.||.|++|++.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 98876654433100 22 015678999999998 799999999999999998764
No 83
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.8e-31 Score=304.55 Aligned_cols=324 Identities=16% Similarity=0.274 Sum_probs=262.6
Q ss_pred cCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeC
Q 007855 238 KGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 317 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~ 317 (587)
.++...+......+...+.+....|..++.|... ..+.+.++.+|...|++++|+|+ +.+|++|+.
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~-------------~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~ 75 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYE-------------TQVEVRSIQVTETPVRAGKFIAR-KNWIIVGSD 75 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEEEEETT-------------TTEEEEEEECCSSCEEEEEEEGG-GTEEEEEET
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECC-------------CCceEEEEecCCCcEEEEEEeCC-CCEEEEEeC
Confidence 3455555566666777777777778788888542 34578899999999999999999 899999999
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC-cEEEEeec-CCcceEEEEccCCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFST-GKIPYVVKLNPDDDK 395 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~-~~i~~~~~-~~~~~~~~~~~~~~~ 395 (587)
||.|+||++ .+++.+..+.+|...|++++|+|++.+|++++.||.|++||+.++ .....+.. ...+.++.|+|. .
T Consensus 76 dg~i~vw~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~--~ 152 (814)
T 3mkq_A 76 DFRIRVFNY-NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK--D 152 (814)
T ss_dssp TSEEEEEET-TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT--E
T ss_pred CCeEEEEEC-CCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC--C
Confidence 999999999 788999999999999999999999999999999999999999987 55555553 344567777772 2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-CCeeEEEEec--CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcce
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEYDQHL-GAVNTITFVD--NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-~~I~~i~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
+.+|++++.||.|++||+.++.....+..+. ..|.+++|+| ++.+|++++.||.|++||+.++..+..+. .|...|
T Consensus 153 ~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v 231 (814)
T 3mkq_A 153 PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLE-GHMSNV 231 (814)
T ss_dssp EEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCE
T ss_pred CCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCE
Confidence 3689999999999999999888777776555 8999999999 99999999999999999999998887775 488899
Q ss_pred eEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC--EEEEEcCCCcEEEEeCCCCe-
Q 007855 473 PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR--FVMSGDGEGKCWFWDWKSCK- 549 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~--~L~sgs~dG~I~vwd~~t~~- 549 (587)
.+++|+|++.+|++++.||.|++||+.++..+. .+..+ ...+.+++|+|+|. ++++++ ++.+.+|++....
T Consensus 232 ~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~---~~~~~--~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 305 (814)
T 3mkq_A 232 SFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK---TLNVG--LERSWCIATHPTGRKNYIASGF-DNGFTVLSLGNDEP 305 (814)
T ss_dssp EEEEECSSSSEEEEEETTSCEEEEETTTCSEEE---EECCS--SSSEEEEEECTTCGGGEEEEEE-TTEEEEEECSCCSC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EeecC--CCcEEEEEEccCCCceEEEEEe-CCCEEEEEcCCCCc
Confidence 999999999999999999999999998765443 33333 45788899999997 455554 6668888875432
Q ss_pred ---------eEE---------------------------------EEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 550 ---------VFR---------------------------------TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 550 ---------~~~---------------------------------~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+. .+..|...+.+++|+| ++.+|++++ ||.+.+|+
T Consensus 306 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~la~~~-~~~~~i~~ 383 (814)
T 3mkq_A 306 TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGRFVTVVG-DGEYVIYT 383 (814)
T ss_dssp CEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSSEEEEEE-TTEEEEEE
T ss_pred eeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCCEEEEec-CCEEEEEE
Confidence 111 1123444678899999 777888887 88999885
No 84
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-30 Score=266.94 Aligned_cols=288 Identities=20% Similarity=0.291 Sum_probs=242.4
Q ss_pred cCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeC
Q 007855 238 KGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 317 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~ 317 (587)
.++...+......+...+.+....|..++.|... ..+.+.++.+|...|++++|+|+ +.+|++++.
T Consensus 29 ~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~-------------~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~~~ 94 (369)
T 3zwl_B 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSL-------------NGERLGTLDGHTGTIWSIDVDCF-TKYCVTGSA 94 (369)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEESSSCEEEEETT-------------TCCEEEEECCCSSCEEEEEECTT-SSEEEEEET
T ss_pred EEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCC-------------CchhhhhhhhcCCcEEEEEEcCC-CCEEEEEeC
Confidence 4555555555566666777777788888888433 34678899999999999999998 899999999
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC-----CeEEEEECCCCcE-----------EEEeecC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQV-----------IRTFSTG 381 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D-----g~I~vWd~~t~~~-----------i~~~~~~ 381 (587)
||.|++||+ .+++++..+. |...|.+++|+|++.+|++++.+ +.|++||+..+.. +..+...
T Consensus 95 dg~i~iwd~-~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 172 (369)
T 3zwl_B 95 DYSIKLWDV-SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITH 172 (369)
T ss_dssp TTEEEEEET-TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECC
T ss_pred CCeEEEEEC-CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCC
Confidence 999999999 7788888887 88999999999999999999999 9999999976532 1222211
Q ss_pred -C--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC
Q 007855 382 -K--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 382 -~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
. ...++++.+++ .+|++++.+|.|++||+++ ...+..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 173 ~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~ 249 (369)
T 3zwl_B 173 EGLDAATVAGWSTKG---KYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVST 249 (369)
T ss_dssp TTCCCEEEEEECGGG---CEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred cCccceeEEEEcCCC---CEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCC
Confidence 1 55677777754 5899999999999999999 788889999999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC--------------eEEEEEcCCceeecccceecccccccceEEEE
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--------------QILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg--------------~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 523 (587)
...+..+. +...+.+++|+|++.++++++.++ .|++||+.++..+ ..+.+| ...|.+++
T Consensus 250 ~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~---~~~~~~--~~~v~~~~ 322 (369)
T 3zwl_B 250 LQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI---GRVQGH--FGPLNTVA 322 (369)
T ss_dssp CCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEE---EEEECC--SSCEEEEE
T ss_pred Cceeeeec--CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcch---hheecc--cCcEEEEE
Confidence 98888775 677899999999999999999988 8999999877554 344555 56789999
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007855 524 FSPDGRFVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 524 ~spdg~~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
|+|++++|++++.||.|++|++.++...
T Consensus 323 ~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 350 (369)
T 3zwl_B 323 ISPQGTSYASGGEDGFIRLHHFEKSYFD 350 (369)
T ss_dssp ECTTSSEEEEEETTSEEEEEEECHHHHT
T ss_pred ECCCCCEEEEEcCCCeEEEEECccccch
Confidence 9999999999999999999999876543
No 85
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=7.2e-32 Score=278.11 Aligned_cols=246 Identities=15% Similarity=0.289 Sum_probs=209.2
Q ss_pred CCCCeEEEEEccCC---CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECC
Q 007855 295 HTKGVSAIRFFPKY---GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 295 H~~~V~~l~~sp~~---g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~ 370 (587)
|...|++++|+|+. +.+|++|+.||.|+|||+ .+++.+..+.+|...|.+++|+| ++.+|++++.||.|++||+.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 68 ADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINP-ITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp TTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECT-TTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEc-hhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 77899999999983 459999999999999999 78889999999999999999999 99999999999999999999
Q ss_pred CCcEEEEee----cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc-----------------------
Q 007855 371 TGQVIRTFS----TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD----------------------- 423 (587)
Q Consensus 371 t~~~i~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~----------------------- 423 (587)
+++.+..+. ....+.++.|++++ .+|++++.||.|++||+++++.+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLG---EKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPD 223 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTS---SEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCS
T ss_pred cCeEEEEecccccccCceeEEEECCCC---CEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCc
Confidence 999998873 44556677777744 589999999999999999876543333
Q ss_pred -----cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE--------------EEEeecCCCcceeEEEEeCC--CC
Q 007855 424 -----QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV--------------IKYISEPHMHSMPSISLHPN--TN 482 (587)
Q Consensus 424 -----~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~--------------~~~~~~~~~~~i~~i~~sp~--g~ 482 (587)
.|...|.+++|+ +++|++++.|+.|++||+..... +..+ ..|...|.+++|+|+ +.
T Consensus 224 ~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~~ 300 (366)
T 3k26_A 224 FSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRF-DYSQCDIWYMRFSMDFWQK 300 (366)
T ss_dssp EEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEE-ECSSCCSSCCCCEECTTSS
T ss_pred cccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccc-cccCCcEEEEEEcCCCCCc
Confidence 399999999999 77999999999999999877532 4443 357788999999999 99
Q ss_pred EEEEEECCCeEEEEEcCCceeec-ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 483 WLAAQSLDNQILIYSTRERFQLN-KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
+|++++.||.|++||+.++.... ....+.+|.....|.+++|+|++++|++++.||.|++||+.+
T Consensus 301 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 301 MLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999999998765443 233556665567899999999999999999999999999853
No 86
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=3.5e-31 Score=272.30 Aligned_cols=294 Identities=12% Similarity=0.126 Sum_probs=225.8
Q ss_pred CCCCCCCccccccc-eEeecccc---cccceeeeeCCCCcccCCCcccCCCceE-EEEcCCCCCeEEEEEccCC--CcEE
Q 007855 240 NAGGEKGEHVEDKS-TFHGKEEK---DYQGRSWVAPPKDAKAANDHCYIPKRLV-HTWSGHTKGVSAIRFFPKY--GHLI 312 (587)
Q Consensus 240 ~~~~~~~~~~~~~~-~~~~~~~~---d~~~r~w~~~~~~~~~~~~~~~~p~~~i-~tl~gH~~~V~~l~~sp~~--g~~L 312 (587)
+...+......+.. .+...... |..++.|..... ++. ....+|...|++++|+|+. +.+|
T Consensus 17 h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~-------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~l 83 (357)
T 3i2n_A 17 FNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHG-------------DLKLLREIEKAKPIKCGTFGATSLQQRYL 83 (357)
T ss_dssp CSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSS-------------SEEEEEEEEESSCEEEEECTTCCTTTCCE
T ss_pred CCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCC-------------cccceeeecccCcEEEEEEcCCCCCCceE
Confidence 44444444444433 45555544 788888865532 222 2233799999999999984 6999
Q ss_pred EEEeCCCeEEEEecCCCCe-eeEEEcccCCceeeEEE------ecCCCeEEEEeCCCeEEEEECCCCc-EEEEeecCC--
Q 007855 313 LSAGMDTKVKIWDVFNSGK-CMRTYMGHSKAVRDISF------CNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGK-- 382 (587)
Q Consensus 313 ~sgs~Dg~I~iWd~~~~~~-~~~~~~~h~~~V~~l~f------s~dg~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~~~-- 382 (587)
++|+.||.|++||+ ..+. .+..+.+|...|.++.| ++++++|++++.|+.|++||+.+++ .+..+....
T Consensus 84 ~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~ 162 (357)
T 3i2n_A 84 ATGDFGGNLHIWNL-EAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGE 162 (357)
T ss_dssp EEEETTSCEEEECT-TSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTS
T ss_pred EEecCCCeEEEEeC-CCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCC
Confidence 99999999999999 4555 88999999999999965 6789999999999999999999887 666665422
Q ss_pred ---cceEEEEcc-CCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec---CCCEEEEEECCCCEEEEEC
Q 007855 383 ---IPYVVKLNP-DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD---NNRRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 383 ---~~~~~~~~~-~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~ 455 (587)
...++.+.+ ....+.+|++++.||.|++||+++++.... ..|...|.+++|+| ++.+|++++.||.|++||+
T Consensus 163 ~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 163 NKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp CCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred CCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 344555322 223457899999999999999999987554 56889999999999 8999999999999999998
Q ss_pred CCCeEEEEe----ecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCceee----------------cccceecccc
Q 007855 456 GIPVVIKYI----SEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQL----------------NKKKRFAGHI 514 (587)
Q Consensus 456 ~~~~~~~~~----~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~----------------~~~~~~~~~~ 514 (587)
+.......+ ...|...|.+++|+|++. +|++++.||.|++||+...... .....+.+|
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~- 320 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS- 320 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC-
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC-
Confidence 765433222 135888999999999998 8999999999999998754322 233445555
Q ss_pred cccceEEEEEcCCCCEEE-EEcCCCcEEEEeCCCCee
Q 007855 515 VAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 515 ~~~~i~~l~~spdg~~L~-sgs~dG~I~vwd~~t~~~ 550 (587)
...|.+++|+|++++|+ +++.||.|+|||+.+.+.
T Consensus 321 -~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 321 -TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp -SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred -CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 56799999999999998 899999999999987654
No 87
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-30 Score=277.09 Aligned_cols=280 Identities=13% Similarity=0.160 Sum_probs=228.0
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe---eeEEEcc-----------------------------------
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK---CMRTYMG----------------------------------- 338 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~---~~~~~~~----------------------------------- 338 (587)
.+|++|+|+|+ |.+|+++ .++.|++||+ .+++ .+..+..
T Consensus 5 ~p~~~v~~s~d-g~~l~~~-~~~~i~v~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T 2vdu_B 5 HPLQNLLTSRD-GSLVFAI-IKNCILSFKY-QSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKG 81 (450)
T ss_dssp CCCCEEEECSS-SSEEEEE-ETTEEEEEEE-ETTTEEEEEEEEECCC---------------------------------
T ss_pred ccEEEEEecCC-CCEEEEE-eCCeEEEEEC-CCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcC
Confidence 47899999999 7766655 5789999999 5666 5555543
Q ss_pred -------------------cCCceeeEEEecCCCeE-EEEeCCCeEEEEECC--CCcEEEEee---cCCcceEEEEccCC
Q 007855 339 -------------------HSKAVRDISFCNDGTKF-LTASYDKNIKYWDTE--TGQVIRTFS---TGKIPYVVKLNPDD 393 (587)
Q Consensus 339 -------------------h~~~V~~l~fs~dg~~l-~s~s~Dg~I~vWd~~--t~~~i~~~~---~~~~~~~~~~~~~~ 393 (587)
|...|++++|+|++++| ++++.||.|+|||+. +++.+..+. ....+.+++|++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 161 (450)
T 2vdu_B 82 DSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD 161 (450)
T ss_dssp ------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS
T ss_pred ccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC
Confidence 33479999999999996 889999999999999 888887774 34556788888754
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcEEE----EEccCCCCeeEEEEecC---CCEEEEEECCCCEEEEECCCCeEEEEeec
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKEITQ----EYDQHLGAVNTITFVDN---NRRFVTSSDDKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~~~~----~~~~h~~~I~~i~~sp~---~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 466 (587)
.+|++|+.+|.|++|++.++.... .+.+|...|++++|+|+ +++|++++.|+.|++||+.++..+..+..
T Consensus 162 ---~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~ 238 (450)
T 2vdu_B 162 ---TTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLF 238 (450)
T ss_dssp ---SEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECC
T ss_pred ---CEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeec
Confidence 589999999999999998876543 67789999999999999 99999999999999999999888877666
Q ss_pred CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec--------c------------cccccceEEEEEcC
Q 007855 467 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--------G------------HIVAGYACQVNFSP 526 (587)
Q Consensus 467 ~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~--------~------------~~~~~~i~~l~~sp 526 (587)
.|...|.+++|+ ++.+|++++.|+.|++||+.++..+....... . ......+..++|+|
T Consensus 239 ~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~ 317 (450)
T 2vdu_B 239 GHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK 317 (450)
T ss_dssp CCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred CCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence 789999999999 99999999999999999998876554332110 0 01234578899999
Q ss_pred CCCEEEEEc-CCCcEEEEeC--CCC---eeEEEEecCCCCEEEEEEcCCCCCEEEEEEC-------CCcEEEc
Q 007855 527 DGRFVMSGD-GEGKCWFWDW--KSC---KVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYW 586 (587)
Q Consensus 527 dg~~L~sgs-~dG~I~vwd~--~t~---~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-------DG~I~iW 586 (587)
++++|++++ .++.|+||++ .++ +.+..+..| +.|.+++|+| ++ ++++++. +..|.||
T Consensus 318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~-~~-~~v~~~~~~~~~~~~~~i~v~ 387 (450)
T 2vdu_B 318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHN-DE-FQVTLDNKESSGVQKNFAKFI 387 (450)
T ss_dssp SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEET-TE-EEEEECCTTCCSSCCCSEEEE
T ss_pred CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecC-Cc-EEEEEecccCCCCCCcceEEE
Confidence 999999998 8999999999 665 778888888 8899999999 54 5555543 4457777
No 88
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-31 Score=272.23 Aligned_cols=253 Identities=20% Similarity=0.291 Sum_probs=208.4
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC--CCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~--t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
+++..+.+|...|++++|+|++++|++++.||.|+|||+. +++.+..+..+ ..+.++.|.+.. .+.+|++|+.||.
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~l~s~~~dg~ 80 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGK 80 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSC
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCC-CCCEEEEeccCCE
Confidence 4566788999999999999999999999999999999998 55666666543 445677776542 2468999999999
Q ss_pred EEEEeCCCCc--EEEEEccCCCCeeEEEEecC--CCEEEEEECCCCEEEEECCCCeE-EEEeecCCCcceeEEEEeC---
Q 007855 408 IVQWDMNTKE--ITQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHP--- 479 (587)
Q Consensus 408 I~iwD~~t~~--~~~~~~~h~~~I~~i~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp--- 479 (587)
|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||++.... .......|...|.+++|+|
T Consensus 81 v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 160 (379)
T 3jrp_A 81 VLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATI 160 (379)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC-
T ss_pred EEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccc
Confidence 9999999987 77788889999999999999 99999999999999999987632 1222336888999999999
Q ss_pred ----------CCCEEEEEECCCeEEEEEcCCceee-cccceecccccccceEEEEEcCC---CCEEEEEcCCCcEEEEeC
Q 007855 480 ----------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 480 ----------~g~~l~~~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~i~~l~~spd---g~~L~sgs~dG~I~vwd~ 545 (587)
++.+|++++.|+.|++||++..... .....+.+| ...|.+++|+|+ +.+|++++.||.|++||+
T Consensus 161 ~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h--~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~ 238 (379)
T 3jrp_A 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 238 (379)
T ss_dssp ---------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEETTSCEEEEEE
T ss_pred cccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecc--cCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeC
Confidence 6999999999999999999765432 223445555 567999999999 899999999999999999
Q ss_pred CCCe---eEEEE--ecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 546 KSCK---VFRTL--KCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 546 ~t~~---~~~~l--~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.++. ....+ ..|...|++++|+| ++.+|++++.||.|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~g~~l~~~~~dg~i~iw~ 284 (379)
T 3jrp_A 239 DNEQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 284 (379)
T ss_dssp SSTTSCCEEEESSSSCCSSCEEEEEECS-SSCCEEEEESSSSEEEEE
T ss_pred CCCCccceeeeeccccCCCcEEEEEEcC-CCCEEEEecCCCcEEEEe
Confidence 8864 22222 34888999999999 778999999999999996
No 89
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.7e-30 Score=267.44 Aligned_cols=287 Identities=15% Similarity=0.179 Sum_probs=231.8
Q ss_pred CCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEE
Q 007855 243 GEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVK 322 (587)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~ 322 (587)
.+......+...+.+....|..++.|-..... .+++.++.+|...|++++|+|+ +.+|++++.||.|+
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~dg~i~ 77 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-----------WVQVHELKEHNGQVTGVDWAPD-SNRIVTCGTDRNAY 77 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEEETT-TTEEEEEETTSCEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-----------EEeeeeecCCCCcccEEEEeCC-CCEEEEEcCCCeEE
Confidence 34444555566677777778888888654321 1377889999999999999998 89999999999999
Q ss_pred EEecCCCCeeeE--EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc---EEEEeec--CCcceEEEEccCCCC
Q 007855 323 IWDVFNSGKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ---VIRTFST--GKIPYVVKLNPDDDK 395 (587)
Q Consensus 323 iWd~~~~~~~~~--~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~---~i~~~~~--~~~~~~~~~~~~~~~ 395 (587)
+||+ ..++... .+..|...|.+++|+|++++|++++.|+.|++||+..+. ....+.. ...+.++.|.+++
T Consensus 78 vwd~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 154 (372)
T 1k8k_C 78 VWTL-KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS-- 154 (372)
T ss_dssp EEEE-ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS--
T ss_pred EEEC-CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC--
Confidence 9999 5665443 346799999999999999999999999999999999876 2334433 3445677777743
Q ss_pred CcEEEEEeCCCcEEEEeC------------------CCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC
Q 007855 396 QNILLAGMSDKKIVQWDM------------------NTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~------------------~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~ 457 (587)
.+|++|+.||.|++||+ ..++.+..+..|...|.+++|+|++++|++++.|+.|++||+++
T Consensus 155 -~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 155 -VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp -SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred -CEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 58999999999999995 46788889999999999999999999999999999999999999
Q ss_pred CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC--ce--ee-----------------ccc---------
Q 007855 458 PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE--RF--QL-----------------NKK--------- 507 (587)
Q Consensus 458 ~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~--~~--~~-----------------~~~--------- 507 (587)
+..+..+. .+...+.+++|+|++.+|+++ .|+.|++|++.. +. .+ ...
T Consensus 234 ~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (372)
T 1k8k_C 234 KMAVATLA-SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS 311 (372)
T ss_dssp TTEEEEEE-CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC--
T ss_pred CceeEEEc-cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhccccccc
Confidence 98887775 477899999999999988887 899999999977 31 00 000
Q ss_pred -------cee-cccccccceEEEEEc-CCC---CEEEEEcCCCcEEEEeCCCCe
Q 007855 508 -------KRF-AGHIVAGYACQVNFS-PDG---RFVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 508 -------~~~-~~~~~~~~i~~l~~s-pdg---~~L~sgs~dG~I~vwd~~t~~ 549 (587)
..+ .+| ...|.+++|+ ++| .+|++|+.||.|++|++.+++
T Consensus 312 ~~~~~~~~~~~~~h--~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 312 EGSAAAGAGLDSLH--KNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp -------CCCSSSS--SSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred ccCccccccccccc--cCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 111 245 5678999865 677 999999999999999987654
No 90
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=1.1e-31 Score=292.45 Aligned_cols=273 Identities=11% Similarity=0.056 Sum_probs=204.8
Q ss_pred CCceEEEEcCCCCCeEEEEEccCC-C-------cEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKY-G-------HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL 356 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~-g-------~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~ 356 (587)
+.++..++. +.+.|.+|+|+|+. + ++||+|+.++.. ...+|+++.|+
T Consensus 123 ~~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~------------------------~~~~~~~~~la 177 (524)
T 2j04_B 123 GKRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD------------------------EPLNEHLEMFD 177 (524)
T ss_dssp CCSCEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC--------------------------------------
T ss_pred CCcceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEecccC------------------------Cccchhhhhhc
Confidence 455666665 78899999999983 1 799998866420 01368999999
Q ss_pred EEeCCCeEEEEECCCCcEE----EEeec-CCcceEEEEccCC---CCCcEEEEEeCCCcEEEEeCCCCcE----------
Q 007855 357 TASYDKNIKYWDTETGQVI----RTFST-GKIPYVVKLNPDD---DKQNILLAGMSDKKIVQWDMNTKEI---------- 418 (587)
Q Consensus 357 s~s~Dg~I~vWd~~t~~~i----~~~~~-~~~~~~~~~~~~~---~~~~~l~sg~~dg~I~iwD~~t~~~---------- 418 (587)
+++.|++|+|||+.+++.. ..+.. ...+..++|+|.. ..+.+|++++.||.|++||+.++..
T Consensus 178 S~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~ 257 (524)
T 2j04_B 178 KEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEK 257 (524)
T ss_dssp ----CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCS
T ss_pred cCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecC
Confidence 9999999999999887642 22333 3456788898862 1246899999999999999987632
Q ss_pred -EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEE--EEeCCC-CEEEEEECCCeEE
Q 007855 419 -TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI--SLHPNT-NWLAAQSLDNQIL 494 (587)
Q Consensus 419 -~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i--~~sp~g-~~l~~~s~dg~I~ 494 (587)
...+.+|...|++++|+++ ..|++|+.||+|++||++++.........|...|.++ +++|++ .+|++++.|++|+
T Consensus 258 p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvk 336 (524)
T 2j04_B 258 PSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFY 336 (524)
T ss_dssp CSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEE
T ss_pred ceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEE
Confidence 2467889999999999986 4899999999999999987633222234688999999 567887 8999999999999
Q ss_pred EEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEE
Q 007855 495 IYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV 574 (587)
Q Consensus 495 iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l 574 (587)
|||+++...+ ..+.+|.....+.+++|+|+++.|++++.|+.|++||++++.++..+.+|.+.|++|+|+| ++.+|
T Consensus 337 lWD~~~~~~~---~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp-~g~~l 412 (524)
T 2j04_B 337 IFNPKDIATT---KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSR-LHPMV 412 (524)
T ss_dssp EECGGGHHHH---CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCS-SCCBC
T ss_pred EEECCCCCcc---cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCC-CCCeE
Confidence 9999876543 2334443323467799999999999999999999999999998889999999999999999 77799
Q ss_pred EEEECCCcEEEcC
Q 007855 575 ATCGWDGLIKYWD 587 (587)
Q Consensus 575 ~s~g~DG~I~iWD 587 (587)
++|+.||+|+|||
T Consensus 413 ~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 413 LAGSADGSLIITN 425 (524)
T ss_dssp EEEETTTEEECCB
T ss_pred EEEECCCEEEEEe
Confidence 9999999999997
No 91
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.98 E-value=4.5e-30 Score=270.65 Aligned_cols=274 Identities=17% Similarity=0.220 Sum_probs=222.5
Q ss_pred ecccccccceeeeeCCCCcccCCCcccCCCceEEEEcC-CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEE
Q 007855 257 GKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSG-HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT 335 (587)
Q Consensus 257 ~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~g-H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~ 335 (587)
.....|..++.|-... .++...+.. |...|++++|+|+ +.+|++|+.||.|+|||+ .+++.+..
T Consensus 107 ~~~~~d~~v~lw~~~~-------------~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~-~~~~~~~~ 171 (401)
T 4aez_A 107 VAVALERNVYVWNADS-------------GSVSALAETDESTYVASVKWSHD-GSFLSVGLGNGLVDIYDV-ESQTKLRT 171 (401)
T ss_dssp EEEEETTEEEEEETTT-------------CCEEEEEECCTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTCCEEEE
T ss_pred EEEECCCeEEEeeCCC-------------CcEeEeeecCCCCCEEEEEECCC-CCEEEEECCCCeEEEEEC-cCCeEEEE
Confidence 4455677788885543 234445554 8999999999998 899999999999999999 78889999
Q ss_pred EcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC-CCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeC
Q 007855 336 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM 413 (587)
Q Consensus 336 ~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~-t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~ 413 (587)
+.+|...|.+++| ++.+|++++.||.|++||++ .+..+..+..+ ..+.++.+++++ .+|++|+.|+.|++||+
T Consensus 172 ~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~s~~~d~~v~iwd~ 246 (401)
T 4aez_A 172 MAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDG---LQLASGGNDNVVQIWDA 246 (401)
T ss_dssp ECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEET
T ss_pred ecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCC---CEEEEEeCCCeEEEccC
Confidence 9999999999999 45799999999999999999 45566666543 445677777743 68999999999999999
Q ss_pred CCCcEEEEEccCCCCeeEEEEecCCC-EEEEEE--CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE--
Q 007855 414 NTKEITQEYDQHLGAVNTITFVDNNR-RFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-- 488 (587)
Q Consensus 414 ~t~~~~~~~~~h~~~I~~i~~sp~~~-~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-- 488 (587)
+++..+..+..|...|.+++|+|++. .+++++ .|+.|++||+.++..+..+. +...+.+++|+|++.+|++++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~ 324 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGF 324 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECT
T ss_pred CCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeec
Confidence 99999999999999999999999765 555544 69999999999998888774 567899999999999999955
Q ss_pred CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
.||.|++|++.++.... ...+.+| ...+.+++|+|+|.+|++++.||.|++|++.+++.+....
T Consensus 325 ~dg~i~v~~~~~~~~~~-~~~~~~h--~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~~~~ 388 (401)
T 4aez_A 325 PDNNLSIWSYSSSGLTK-QVDIPAH--DTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVKRPI 388 (401)
T ss_dssp TTCEEEEEEEETTEEEE-EEEEECC--SSCCCEEEECTTSSEEEEECTTSEEEEEECCC--------
T ss_pred CCCcEEEEecCCcccee-EEEecCC--CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccccccc
Confidence 89999999998754332 2334555 5678899999999999999999999999999988776553
No 92
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.98 E-value=1.9e-30 Score=271.56 Aligned_cols=332 Identities=14% Similarity=0.177 Sum_probs=226.8
Q ss_pred CCCCCCCCccccc-cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEE-----EcCCCCCeEEEEEccCCCcEE
Q 007855 239 GNAGGEKGEHVED-KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHT-----WSGHTKGVSAIRFFPKYGHLI 312 (587)
Q Consensus 239 ~~~~~~~~~~~~~-~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~t-----l~gH~~~V~~l~~sp~~g~~L 312 (587)
++...+......+ ...+.+....|..++.|-......... +....... ..+|...|++++|+|+++.+|
T Consensus 41 ~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 115 (408)
T 4a11_B 41 IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSY-----YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMF 115 (408)
T ss_dssp CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSC-----EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCE
T ss_pred ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccce-----EeccccccccccccccCCCcEEEEEEccCCCcEE
Confidence 3455555556666 777888888999999997665432111 00011111 146999999999999658899
Q ss_pred EEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC---CCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEE
Q 007855 313 LSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND---GTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVK 388 (587)
Q Consensus 313 ~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d---g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~ 388 (587)
++++.||.|++||+ ..++.+..+. +...+.++.|++. +.+|++++.|+.|++||+.+++.+..+..+ ..+.++.
T Consensus 116 ~s~~~d~~i~iwd~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 116 TSSSFDKTLKVWDT-NTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVS 193 (408)
T ss_dssp EEEETTSEEEEEET-TTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEE
T ss_pred EEEeCCCeEEEeeC-CCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEE
Confidence 99999999999999 6777777775 7788999999984 459999999999999999999988888744 4456777
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEE---------------ccCCCCeeEEEEecCCCEEEEEECCCCEEE
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------------DQHLGAVNTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~---------------~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
+.+++. .+|++|+.||.|++||++++. .+..+ ..|...|.+++|+|++++|++++.||.|++
T Consensus 194 ~~~~~~--~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~v 271 (408)
T 4a11_B 194 WSPRYD--YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRL 271 (408)
T ss_dssp ECSSCT--TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ECCCCC--cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEE
Confidence 877543 579999999999999998775 44444 568899999999999999999999999999
Q ss_pred EECCCCeEEEEeec----CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 453 WEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 453 wd~~~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
||+.++........ .....+........+..+++++.++.|++||+.++..+ ..+.+| ...|.+++|+|++
T Consensus 272 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~---~~~~~~--~~~v~~~~~s~~~ 346 (408)
T 4a11_B 272 WNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI---TMLKGH--YKTVDCCVFQSNF 346 (408)
T ss_dssp EETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE---EEECCC--SSCEEEEEEETTT
T ss_pred EECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce---eeeccC--CCeEEEEEEcCCC
Confidence 99988765433221 11112222233334566777788999999999887655 344555 4678899999999
Q ss_pred CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 529 RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 529 ~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++|++|+.||.|++||+.+++.+.....+.. ...+.+.....+.+++.|+.|++|+
T Consensus 347 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~W~ 402 (408)
T 4a11_B 347 QELYSGSRDCNILAWVPSLYEPVPDDDETTT---KSQLNPAFEDAWSSSDEEGGTSAWS 402 (408)
T ss_dssp TEEEEEETTSCEEEEEECC----------------------------------------
T ss_pred CEEEEECCCCeEEEEeCCCCCccCCCCceEe---ccccccccceeecccCccCceeecC
Confidence 9999999999999999999988766554332 2334444455677788899999995
No 93
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.97 E-value=4.9e-30 Score=267.91 Aligned_cols=284 Identities=14% Similarity=0.143 Sum_probs=218.6
Q ss_pred CCCCCCCCccccccc-eEeecccccccceeeeeCCCCcccCCCcccCCCceEEEE--cCCCCCeEEEEEccCCCcEEEEE
Q 007855 239 GNAGGEKGEHVEDKS-TFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSA 315 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~-~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl--~gH~~~V~~l~~sp~~g~~L~sg 315 (587)
++...+......+.. .+.+....|..++.|..... +....+ .+|...|++++|+|+++.+|+++
T Consensus 71 ~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~ 137 (383)
T 3ei3_B 71 PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQ-------------NKTSFIQGMGPGDAITGMKFNQFNTNQLFVS 137 (383)
T ss_dssp CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTST-------------TCEEEECCCSTTCBEEEEEEETTEEEEEEEE
T ss_pred CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCc-------------ccceeeecCCcCCceeEEEeCCCCCCEEEEE
Confidence 444445555555555 67788888888898865532 223333 47999999999999548999999
Q ss_pred eCCCeEEEEecCCCCeeeEEEccc---CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec-CCcceEEEEcc
Q 007855 316 GMDTKVKIWDVFNSGKCMRTYMGH---SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNP 391 (587)
Q Consensus 316 s~Dg~I~iWd~~~~~~~~~~~~~h---~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~ 391 (587)
+.|+.|++||+ . +..+..+..| ...|.+++|+|++++|++++.|+.|++||+ +++.+..+.. ...+.+++|++
T Consensus 138 ~~d~~i~iwd~-~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~ 214 (383)
T 3ei3_B 138 SIRGATTLRDF-S-GSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP 214 (383)
T ss_dssp ETTTEEEEEET-T-SCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred eCCCEEEEEEC-C-CCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence 99999999999 3 4556666544 488999999999999999999999999999 5677777764 44566777877
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCC----CcEEEEEccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEEeec
Q 007855 392 DDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwD~~t----~~~~~~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 466 (587)
++. .+|++|+.|+.|++||+++ +..+..+ .|...|.+++|+| ++.+|++++.|+.|++||+++......+..
T Consensus 215 ~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 291 (383)
T 3ei3_B 215 RCD--WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIII 291 (383)
T ss_dssp SCT--TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEE
T ss_pred CCC--CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccc
Confidence 543 4899999999999999998 6666666 6999999999999 999999999999999999987655433321
Q ss_pred ------CCCc----------ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 467 ------PHMH----------SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 467 ------~~~~----------~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
.+.. .+..++++|++++ +++.|+.|++||+.++..+ ..+.++.....+..++|+|++++
T Consensus 292 ~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~---~~l~~~~~~~~~~~~~~s~~g~~ 366 (383)
T 3ei3_B 292 HPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV---HQLRDPNAAGIISLNKFSPTGDV 366 (383)
T ss_dssp CCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE---EEECBTTBCSCCCEEEECTTSSE
T ss_pred ccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCcee---eeecCCCCCceEEEEEEecCccE
Confidence 1222 2333555555555 5668999999999887654 33444444566777899999999
Q ss_pred EEEEcCCCcEEEEeCCC
Q 007855 531 VMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t 547 (587)
|++|+ ||.|+|||+.+
T Consensus 367 l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 367 LASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEEE-TTEEEEEECC-
T ss_pred EEEec-CCcEEEEecCC
Confidence 99997 99999999864
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=2.3e-29 Score=267.04 Aligned_cols=276 Identities=20% Similarity=0.318 Sum_probs=217.7
Q ss_pred ccccceeeeeCCCCcccCCCcccCCCceEEE--EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc
Q 007855 261 KDYQGRSWVAPPKDAKAANDHCYIPKRLVHT--WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG 338 (587)
Q Consensus 261 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~t--l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 338 (587)
.|..+|.|-... .++++. +.+|...|++|+|+|+ +.+|++|+.||+|+|||+ .++++++.+.+
T Consensus 123 ld~tV~lWd~~t-------------g~~~~~~~~~~~~~~V~sv~fspd-g~~lasgs~Dg~v~iWd~-~~~~~~~~~~~ 187 (420)
T 4gga_A 123 LDNSVYLWSASS-------------GDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 187 (420)
T ss_dssp ETTEEEEEETTT-------------CCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSCEEEEET-TTTEEEEEECC
T ss_pred eCCEEEEEECCC-------------CCEEEEEEecCCCCcEEEEEECCC-CCEEEEEECCCeEEEEEc-CCCcEEEEEeC
Confidence 477788885433 334444 4578889999999999 999999999999999999 78999999999
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-EEEEeecCC-cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFSTGK-IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~~~-~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
|...|.+++|+ +.+|++|+.|+.+++||..... .+..+..+. ....+.+.+.+ .++++++.|+.|++|++.++
T Consensus 188 h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g---~~l~s~~~D~~v~i~~~~~~ 262 (420)
T 4gga_A 188 HSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---RHLASGGNDNLVNVWPSAPG 262 (420)
T ss_dssp CSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEESSCC
T ss_pred CCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC---CeeeeeeccccceEEeeccc
Confidence 99999998885 6799999999999999998754 445554433 34455555543 68999999999999999876
Q ss_pred c----EEEEEccCCCCeeEEEEecCCC-EEEEE--ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-
Q 007855 417 E----ITQEYDQHLGAVNTITFVDNNR-RFVTS--SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 488 (587)
Q Consensus 417 ~----~~~~~~~h~~~I~~i~~sp~~~-~l~s~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s- 488 (587)
+ .+.....|...|.+++|+|.+. .++++ +.|++|++||+.++.....+. ....+.++.|+|++..+++++
T Consensus 263 ~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~--~~~~v~~~~~~~~~~~lv~~sg 340 (420)
T 4gga_A 263 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHG 340 (420)
T ss_dssp SSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEE--CSSCEEEEEEETTTTEEEEEEC
T ss_pred cccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeec--cccceeeeeecCCCCeEEEEEe
Confidence 4 4567788999999999999665 44443 479999999999999888774 456789999999999998876
Q ss_pred -CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEE
Q 007855 489 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 563 (587)
Q Consensus 489 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~ 563 (587)
.|+.|+|||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||+|+|||+....+......+...+..
T Consensus 341 ~~d~~I~iwd~~~~~~v---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~~~~~~~~~~~~~ 411 (420)
T 4gga_A 341 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFELDPARRREREKASAAK 411 (420)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC------------
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCccchhhhccCCccc
Confidence 6899999999887655 456677 578999999999999999999999999999887666666555544433
No 95
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=1.1e-29 Score=263.67 Aligned_cols=280 Identities=11% Similarity=0.146 Sum_probs=207.8
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeE-EEEeCCCe
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKN 363 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l-~s~s~Dg~ 363 (587)
..++++++.+|...|++++|+|+ +.+|++|+.++ ++||++ .....+.... ...+..+++.++++.+ ++++.|++
T Consensus 8 ~~~~~~~~~~h~~~V~~v~fs~d-g~~la~g~~~~-~~iw~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~d~~ 82 (355)
T 3vu4_A 8 TRNPIVPENHVSNPVTDYEFNQD-QSCLILSTLKS-FEIYNV-HPVAHIMSQE--MRHLSKVRMLHRTNYVAFVTGVKEV 82 (355)
T ss_dssp -----------CCCCCEEEECTT-SSEEEEECSSE-EEEEEE-TTEEEEEEEE--CSCCCEEEECTTSSEEEEECSSTTE
T ss_pred ccCCccccccCCCceEEEEECCC-CCEEEEEcCCE-EEEEec-CCcceeeeee--cCCeEEEEEcCCCCEEEEEECCccE
Confidence 34556678899999999999999 89999998775 789998 5555554433 2358889999988877 56778899
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-cEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-EITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
|+|||+.+++++..+.....+..+.+.+. .++++ .++.|++||+.++ +.+..+.. +...+++++ ..++
T Consensus 83 v~iWd~~~~~~~~~~~~~~~v~~v~~~~~-----~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la 151 (355)
T 3vu4_A 83 VHIWDDVKKQDVSRIKVDAPVKDLFLSRE-----FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLV 151 (355)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSS-----EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEE
T ss_pred EEEEECCCCcEEEEEECCCceEEEEEcCC-----EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEE
Confidence 99999999999999987776667776542 24443 4789999999988 66555543 445566666 5666
Q ss_pred E--EECCCCEEEEECCCCe---------------E-EEEeecCCCcceeEEEEeCCCCEEEEEECCCe-EEEEEcCCcee
Q 007855 443 T--SSDDKSLRVWEFGIPV---------------V-IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQ-ILIYSTRERFQ 503 (587)
Q Consensus 443 s--~s~Dg~I~iwd~~~~~---------------~-~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~-I~iwd~~~~~~ 503 (587)
+ ++.||.|++||+..+. + +..+ ..|...|.+++|+|++.+|++++.|++ |++||+.++..
T Consensus 152 ~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~-~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~ 230 (355)
T 3vu4_A 152 YSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLI-KAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL 230 (355)
T ss_dssp EEESSCTTCEEEEECCC------------------CCEEE-CCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred EeCCCcCcEEEEEECCCCCccccccccccccccCcccEEE-EccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence 6 5889999999998754 1 2333 469999999999999999999999998 99999998765
Q ss_pred ecccceec-c-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee--EEEE------------------e---cCC
Q 007855 504 LNKKKRFA-G-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV--FRTL------------------K---CHE 558 (587)
Q Consensus 504 ~~~~~~~~-~-~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~--~~~l------------------~---~h~ 558 (587)
+. .+. + | ...|.+++|+|+|++|++++.||.|++||+..+.. ...+ . .+.
T Consensus 231 ~~---~~~~g~h--~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (355)
T 3vu4_A 231 VR---EFRRGLD--RADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKH 305 (355)
T ss_dssp EE---EEECTTC--CSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTT
T ss_pred EE---EEEcCCC--CCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCC
Confidence 53 333 3 4 46799999999999999999999999999976531 1111 1 112
Q ss_pred CCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 559 GVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 559 ~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.....++|++ ++.+|++++.||.+++|+
T Consensus 306 ~~~~~~a~~~-d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 306 VRGCKIAWIS-ESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp CCCCEEEESS-SSEEEEEETTTTEEEEEE
T ss_pred CCceEEEEeC-CCCEEEEEeCCCeEEEEE
Confidence 2336689999 777999999999999985
No 96
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=6.1e-30 Score=272.50 Aligned_cols=257 Identities=19% Similarity=0.332 Sum_probs=213.0
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC---------CeeeEEEcccCCceeeEEEecCCC-eEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS---------GKCMRTYMGHSKAVRDISFCNDGT-KFLTA 358 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---------~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~ 358 (587)
+....+|.+.|++|+|+|+++.+|++++.||.|+||++... ...+..+.+|...|.+|+|+|++. +|++|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~ 200 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA 200 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence 45667899999999999976789999999999999999431 577888999999999999999988 99999
Q ss_pred eCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec-C
Q 007855 359 SYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD-N 437 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp-~ 437 (587)
+.||.|++|++.++... . ..+ .....+..|...|.+++|+| +
T Consensus 201 ~~dg~i~vwd~~~~~~~--------~------------~~~-----------------~~~~~~~~h~~~v~~v~~~p~~ 243 (430)
T 2xyi_A 201 SDDHTICLWDINATPKE--------H------------RVI-----------------DAKNIFTGHTAVVEDVAWHLLH 243 (430)
T ss_dssp CTTSCEEEEETTSCCBG--------G------------GEE-----------------ECSEEECCCSSCEEEEEECSSC
T ss_pred eCCCeEEEEeCCCCCCC--------C------------cee-----------------ccceeecCCCCCEeeeEEeCCC
Confidence 99999999999863210 0 000 11234567999999999999 7
Q ss_pred CCEEEEEECCCCEEEEECCCC---eEEEEeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCceeecccceeccc
Q 007855 438 NRRFVTSSDDKSLRVWEFGIP---VVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGH 513 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~---~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 513 (587)
+..|++++.|+.|++||++.. ..+..+. .|...|.+++|+|++. +|++++.||.|++||++.... ....+.+|
T Consensus 244 ~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~--~~~~~~~h 320 (430)
T 2xyi_A 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL--KLHSFESH 320 (430)
T ss_dssp TTEEEEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS--CSEEEECC
T ss_pred CCEEEEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC--CeEEeecC
Confidence 789999999999999999876 3444443 5888999999999887 789999999999999987432 23445555
Q ss_pred ccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCC--------------CeeEEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 514 IVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKS--------------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 514 ~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~t--------------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
...|.+++|+|++. +|++++.||.|+|||+.. .+++..+.+|...|++++|+|++..+|++++
T Consensus 321 --~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s 398 (430)
T 2xyi_A 321 --KDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVS 398 (430)
T ss_dssp --SSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEE
T ss_pred --CCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEE
Confidence 56789999999995 689999999999999987 3677888899999999999995544999999
Q ss_pred CCCcEEEcC
Q 007855 579 WDGLIKYWD 587 (587)
Q Consensus 579 ~DG~I~iWD 587 (587)
.||.|+||+
T Consensus 399 ~dg~i~iw~ 407 (430)
T 2xyi_A 399 EDNIMQVWQ 407 (430)
T ss_dssp TTSEEEEEE
T ss_pred CCCCEEEeE
Confidence 999999996
No 97
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7e-29 Score=250.16 Aligned_cols=285 Identities=18% Similarity=0.261 Sum_probs=230.1
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD 318 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D 318 (587)
++...+..... ....+.+....|..++.|.... .++...+.+|...|++++|+|+ +.+|++|+.|
T Consensus 16 ~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-------------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d 80 (313)
T 3odt_A 16 GHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-------------QWLGTVVYTGQGFLNSVCYDSE-KELLLFGGKD 80 (313)
T ss_dssp CCSSCEEEEEE-EETTEEEEEETTSEEEEEEESS-------------SEEEEEEEECSSCEEEEEEETT-TTEEEEEETT
T ss_pred CCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-------------CEEEEEeecCCccEEEEEECCC-CCEEEEecCC
Confidence 44444444444 4455567778888888886532 4567788899999999999999 9999999999
Q ss_pred CeEEEEecCCC--CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCC
Q 007855 319 TKVKIWDVFNS--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDK 395 (587)
Q Consensus 319 g~I~iWd~~~~--~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~ 395 (587)
|.|++|++... .+.+..+.+|...|.+++| ++.+|++++.|+.|++|| .++.+..+..+ .....+.+.+. .
T Consensus 81 g~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~--~ 154 (313)
T 3odt_A 81 TMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSF--S 154 (313)
T ss_dssp SCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEET--T
T ss_pred CeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccC--C
Confidence 99999998443 3667788999999999999 577999999999999999 66777766644 34456677663 2
Q ss_pred CcEEEEEeCCCcEEEEeCCCCcEEEEEcc-CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeE
Q 007855 396 QNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 474 (587)
Q Consensus 396 ~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~ 474 (587)
+.++++++.||.|++|| .......+.. |...|.+++|+|++. |++++.|+.|++||++++..+..+. .|...|.+
T Consensus 155 ~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~ 230 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYC 230 (313)
T ss_dssp TTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEE
T ss_pred CCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEE
Confidence 36899999999999999 5566777776 999999999999998 9999999999999999998887775 48889999
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEE
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l 554 (587)
++|+|++ .|++++.||.|++||+.++..+. .+..+ ...+.+++|+|+++ +++++.||.|++||+.+++.+...
T Consensus 231 ~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~---~~~~~--~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 231 IKLLPNG-DIVSCGEDRTVRIWSKENGSLKQ---VITLP--AISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEECTTS-CEEEEETTSEEEEECTTTCCEEE---EEECS--SSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred EEEecCC-CEEEEecCCEEEEEECCCCceeE---EEecc--CceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999 58999999999999998875543 33444 45788999999998 557889999999999988765544
Q ss_pred e
Q 007855 555 K 555 (587)
Q Consensus 555 ~ 555 (587)
.
T Consensus 304 ~ 304 (313)
T 3odt_A 304 E 304 (313)
T ss_dssp -
T ss_pred h
Confidence 3
No 98
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.4e-30 Score=263.64 Aligned_cols=270 Identities=8% Similarity=0.036 Sum_probs=207.6
Q ss_pred EccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC---------CCcE
Q 007855 304 FFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---------TGQV 374 (587)
Q Consensus 304 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~---------t~~~ 374 (587)
++++ +.+|++|+.||+|+|||+ .+++.+..+. ...|.++.|+|+ +++++.|++|++|+.. +++.
T Consensus 44 ~~~d-~~~l~sg~~Dg~v~iwd~-~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYD-KWVCMCRCEDGALHFTQL-KDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEE-EEEEEEEEETTEEEEEEE-SSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCC-CCEEEEECCCCcEEEEEC-CCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 3455 789999999999999999 6777777775 567889999988 9999999999999655 6666
Q ss_pred EEEeecCCc--ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEE
Q 007855 375 IRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLR 451 (587)
Q Consensus 375 i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~ 451 (587)
+..+...+. +.++.++|.. .+.+|++|+.||.|++||+++++.+..+. .|...|++++|+|++.+|++|+.||.|+
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~ 195 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEV-NTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILD 195 (343)
T ss_dssp EEEEECCCSSCEEEEECCC----CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEE
T ss_pred eEEeecCCCCCEEEEEcCCCC-CCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEE
Confidence 666665443 5566666611 23689999999999999999999877664 4556899999999999999999999999
Q ss_pred EEECCCCeEE-EEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 452 VWEFGIPVVI-KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 452 iwd~~~~~~~-~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
+||++++..+ ..+...|...|.+++|+|++.+|++++ ++.|++||++....+.....+..+.......+++|+|+|++
T Consensus 196 iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (343)
T 3lrv_A 196 VYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKN 274 (343)
T ss_dssp EEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSE
T ss_pred EEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCE
Confidence 9999998876 555444889999999999999999999 55999999988765544443333321111146999999999
Q ss_pred EEEEcC-CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCC--CCCEEEEEECCCcEEEc
Q 007855 531 VMSGDG-EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL--EQSKVATCGWDGLIKYW 586 (587)
Q Consensus 531 L~sgs~-dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~--~~~~l~s~g~DG~I~iW 586 (587)
|++++. ++.|+||++......... .++..+.|.++ +...|++++.||.+.++
T Consensus 275 l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 275 MIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI 329 (343)
T ss_dssp EEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred EEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence 999988 999999999765433322 45666777762 33468888888887765
No 99
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=5.8e-30 Score=269.61 Aligned_cols=279 Identities=17% Similarity=0.230 Sum_probs=224.9
Q ss_pred eEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC---
Q 007855 254 TFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--- 330 (587)
Q Consensus 254 ~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--- 330 (587)
.+......|..++.|........ .+.+..+.+|.+.|++++|+|.++.+|++|+.||+|+||++ ..+
T Consensus 48 ~~~~~~~~~g~i~v~~~~~~~~~---------~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~-~~~~~~ 117 (402)
T 2aq5_A 48 ALICEASGGGAFLVLPLGKTGRV---------DKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEI-PDGGLV 117 (402)
T ss_dssp EEEBCCSSSCCEEEEETTCCEEC---------CTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEEC-CTTCCS
T ss_pred EEEEEEcCCCEEEEEECccCCCC---------CCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEc-cCCCCc
Confidence 34445667778888865332110 12344678999999999999943999999999999999999 454
Q ss_pred ----eeeEEEcccCCceeeEEEecCC-CeEEEEeCCCeEEEEECCCCcEEEEee---cCCcceEEEEccCCCCCcEEEEE
Q 007855 331 ----KCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAG 402 (587)
Q Consensus 331 ----~~~~~~~~h~~~V~~l~fs~dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg 402 (587)
.++..+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+++.+..+. ....+.+++|++++ .+|+++
T Consensus 118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~ 194 (402)
T 2aq5_A 118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG---ALICTS 194 (402)
T ss_dssp SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS---SCEEEE
T ss_pred cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC---CEEEEE
Confidence 6788899999999999999998 699999999999999999999998883 33456678887744 579999
Q ss_pred eCCCcEEEEeCCCCcEEEEE-ccCCCC-eeEEEEecCCCEEEEE---ECCCCEEEEECCCCeE-EEEeecCCCcceeEEE
Q 007855 403 MSDKKIVQWDMNTKEITQEY-DQHLGA-VNTITFVDNNRRFVTS---SDDKSLRVWEFGIPVV-IKYISEPHMHSMPSIS 476 (587)
Q Consensus 403 ~~dg~I~iwD~~t~~~~~~~-~~h~~~-I~~i~~sp~~~~l~s~---s~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~ 476 (587)
+.||.|++||+++++.+..+ ..|.+. +.++.|+|++.+|+++ +.|+.|++||++.... +......+...+.+++
T Consensus 195 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~ 274 (402)
T 2aq5_A 195 CRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPF 274 (402)
T ss_dssp ETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEE
T ss_pred ecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEE
Confidence 99999999999999999988 788776 9999999999999998 7899999999987643 3333335677899999
Q ss_pred EeCCCCEEEEE-ECCCeEEEEEcCCcee-ecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 477 LHPNTNWLAAQ-SLDNQILIYSTRERFQ-LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 477 ~sp~g~~l~~~-s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
|+|++.+|+++ +.|+.|++|++.++.. +.. +..+.....+.+++|+|++.++++ .++.+++|++.++.+
T Consensus 275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~---l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY---LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp EETTTTEEEEEETTCSCEEEEEECSSTTCEEE---EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred EcCCCCEEEEEEcCCCeEEEEEecCCCcceEe---ecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 99999999755 4799999999987653 322 223333577889999999998875 456999999988754
No 100
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.1e-30 Score=293.29 Aligned_cols=256 Identities=21% Similarity=0.350 Sum_probs=209.0
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCC-CCeeeEEEcccCCceeeEEEecC--CCeEEEEeCCCeEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFN-SGKCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIK 365 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fs~d--g~~l~s~s~Dg~I~ 365 (587)
+.++.+|.+.|++++|+|+ +.+|++|+.||+|+||++.. .+..+..+.+|...|++++|+++ +++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~d-g~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYY-GKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSS-SCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCC-CCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEE
Confidence 4578999999999999999 89999999999999999932 45778889999999999999987 99999999999999
Q ss_pred EEECCCCc--EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC--cEEEEEccCCCCeeEEEEec----
Q 007855 366 YWDTETGQ--VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK--EITQEYDQHLGAVNTITFVD---- 436 (587)
Q Consensus 366 vWd~~t~~--~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~--~~~~~~~~h~~~I~~i~~sp---- 436 (587)
+||+.+++ .+..+. ....+.++.++|+. .+.++++|+.||.|++||++++ .....+..|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~-~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~ 159 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHE-YGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE 159 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGG-GCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC--
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCC-CCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccc
Confidence 99999986 445544 34456678887752 1368999999999999999887 34556778999999999999
Q ss_pred ---------CCCEEEEEECCCCEEEEECCCC----eEEEEeecCCCcceeEEEEeCC---CCEEEEEECCCeEEEEEcCC
Q 007855 437 ---------NNRRFVTSSDDKSLRVWEFGIP----VVIKYISEPHMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 437 ---------~~~~l~s~s~Dg~I~iwd~~~~----~~~~~~~~~~~~~i~~i~~sp~---g~~l~~~s~dg~I~iwd~~~ 500 (587)
++..|++++.||.|++||++.. .....+ ..|...|.+++|+|+ +.+|++++.||.|++||+.+
T Consensus 160 ~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~-~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 160 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp -------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred cccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeee-cCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999876 333333 468899999999999 89999999999999999987
Q ss_pred ceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
+.................+.+++|+|+|++|++|+.||.|++|++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred CCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 54222222222222356788899999999999999999999999874
No 101
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.97 E-value=7e-31 Score=273.30 Aligned_cols=243 Identities=19% Similarity=0.204 Sum_probs=195.6
Q ss_pred EcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC--cEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 007855 336 YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG--QVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 412 (587)
Q Consensus 336 ~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~--~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD 412 (587)
+..|..+|++++|+|++++|++++.|+.|+|||+.++ +.+..+..+ ..+.+++|++++ .+|++|+.|+.|++||
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~---~~l~s~s~d~~v~vwd 83 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKS---NRIVTCSQDRNAYVYE 83 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTT---CCEEEEETTSSEEEC-
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCC---CEEEEEeCCCeEEEEE
Confidence 3446789999999999999999999999999999988 566666543 445678888764 5799999999999999
Q ss_pred CCCCc---EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE---EEEeecCCCcceeEEEEeCCCCEEEE
Q 007855 413 MNTKE---ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAA 486 (587)
Q Consensus 413 ~~t~~---~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~ 486 (587)
+.++. ....+..|...|.+++|+|++++|++++.|+.|++||++.... ...+..+|...|.+++|+|++++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~ 163 (377)
T 3dwl_C 84 KRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAA 163 (377)
T ss_dssp -----CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEE
T ss_pred cCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEE
Confidence 99887 6777888999999999999999999999999999999988763 55555558999999999999999999
Q ss_pred EECCCeEEEEEcCCce---------------eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-
Q 007855 487 QSLDNQILIYSTRERF---------------QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV- 550 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~---------------~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~- 550 (587)
++.|+.|++||+.... .......+ +| ...+.+++|+|+|++|++++.||.|++||+.+++.
T Consensus 164 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~ 240 (377)
T 3dwl_C 164 GCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PS--GGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP 240 (377)
T ss_dssp EESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CC--SSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC
T ss_pred EeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cC--CceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc
Confidence 9999999999985321 01112223 44 56799999999999999999999999999999887
Q ss_pred ---EEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 551 ---FRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 551 ---~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+..+.+|...|.+++|+| ++.+|++++.|+.+ +|
T Consensus 241 ~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~~~~~-~~ 277 (377)
T 3dwl_C 241 PRALITVKLSQLPLRSLLWAN-ESAIVAAGYNYSPI-LL 277 (377)
T ss_dssp EEECCCEECSSSCEEEEEEEE-TTEEEEEESSSSEE-EE
T ss_pred ceeeEeecCCCCceEEEEEcC-CCCEEEEEcCCcEE-EE
Confidence 888899999999999999 67788888766666 55
No 102
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=9.3e-29 Score=262.22 Aligned_cols=285 Identities=16% Similarity=0.224 Sum_probs=234.4
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE-----EEcccCCceeeEEEecCCCeEEEEeCC
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR-----TYMGHSKAVRDISFCNDGTKFLTASYD 361 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-----~~~~h~~~V~~l~fs~dg~~l~s~s~D 361 (587)
+.+..+..+. .+.+++|+|+ +.++++++.++.|++||+ .+++.+. .+.+|...|.+++|++++.++++++.|
T Consensus 114 ~~~~~~~~~~-~~~~~~~s~~-~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d 190 (433)
T 3bws_A 114 RFISRFKTGF-QPKSVRFIDN-TRLAIPLLEDEGMDVLDI-NSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA 190 (433)
T ss_dssp EEEEEEECSS-CBCCCEESSS-SEEEEEBTTSSSEEEEET-TTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG
T ss_pred eEEEEEcCCC-CceEEEEeCC-CeEEEEeCCCCeEEEEEC-CCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC
Confidence 4455666554 4669999995 899999999999999999 6777776 345789999999999999999999999
Q ss_pred CeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 362 KNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
+.|++||+.+++.+..+.. ...+..+++.+++. .++++++.++.|++||+++++.+..+..+ ..+.+++|+|++++
T Consensus 191 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~g~~ 267 (433)
T 3bws_A 191 NAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRD--LVYCSNWISEDISVIDRKTKLEIRKTDKI-GLPRGLLLSKDGKE 267 (433)
T ss_dssp TEEEEEETTTCCEEEEEECSSSSEEEEEEETTTT--EEEEEETTTTEEEEEETTTTEEEEECCCC-SEEEEEEECTTSSE
T ss_pred CEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCC--EEEEEecCCCcEEEEECCCCcEEEEecCC-CCceEEEEcCCCCE
Confidence 9999999999999888874 44566788887543 45566668999999999999988887654 56999999999999
Q ss_pred EEEEE--------CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEE-EEEECCCeEEEEEcCCceeecccceec
Q 007855 441 FVTSS--------DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 441 l~s~s--------~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l-~~~s~dg~I~iwd~~~~~~~~~~~~~~ 511 (587)
|++++ .|+.|++||+.++..+..+ .+...+.+++|+|+++.+ ++++.++.|++||+.++...... .
T Consensus 268 l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~--~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~---~ 342 (433)
T 3bws_A 268 LYIAQFSASNQESGGGRLGIYSMDKEKLIDTI--GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSI---P 342 (433)
T ss_dssp EEEEEEESCTTCSCCEEEEEEETTTTEEEEEE--EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEE---E
T ss_pred EEEEECCCCccccCCCeEEEEECCCCcEEeec--cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEe---c
Confidence 99988 5889999999998877666 345578899999999755 55688999999999876554322 1
Q ss_pred ccccccceEEEEEcCCCCEEEEEcC---------------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 512 GHIVAGYACQVNFSPDGRFVMSGDG---------------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~~L~sgs~---------------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
+ ...+.+++|+|+|++|++++. ||.|++||+.+++.+..+..+ ..+.+++|+| ++.+|++
T Consensus 343 -~--~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~ 417 (433)
T 3bws_A 343 -V--FDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG-NQPTGLDVSP-DNRYLVI 417 (433)
T ss_dssp -C--SSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS-SSEEEEEECT-TSCEEEE
T ss_pred -C--CCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC-CCCceEEEcC-CCCEEEE
Confidence 1 345778999999999988876 579999999999999988864 5689999999 6777877
Q ss_pred EEC-CCcEEEcC
Q 007855 577 CGW-DGLIKYWD 587 (587)
Q Consensus 577 ~g~-DG~I~iWD 587 (587)
++. |+.|++||
T Consensus 418 ~~~~d~~i~v~~ 429 (433)
T 3bws_A 418 SDFLDHQIRVYR 429 (433)
T ss_dssp EETTTTEEEEEE
T ss_pred EECCCCeEEEEE
Confidence 765 99999996
No 103
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.97 E-value=4.4e-30 Score=273.91 Aligned_cols=286 Identities=14% Similarity=0.130 Sum_probs=210.1
Q ss_pred CCccccc-cceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEE
Q 007855 245 KGEHVED-KSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKI 323 (587)
Q Consensus 245 ~~~~~~~-~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~i 323 (587)
......+ ...+.+.+..|..++.|-..... ...+..+.+|.+.|++|+|+|.++.+|+||+.||+|+|
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~-----------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD-----------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCS-----------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCC-----------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 3334443 34466788889999999554322 22345677999999999999966899999999999999
Q ss_pred EecCCCCeeeEEEcc--cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcEEE
Q 007855 324 WDVFNSGKCMRTYMG--HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILL 400 (587)
Q Consensus 324 Wd~~~~~~~~~~~~~--h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~ 400 (587)
||+ ..+........ +...+.+++|++++.+|++|+.||.|++||++.. .+..+.. ...+.+++|+|.. ..+|+
T Consensus 192 wd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~--~~~~~ 267 (435)
T 4e54_B 192 QDF-KGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCC--DWFLA 267 (435)
T ss_dssp EET-TSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTC--SSEEE
T ss_pred eec-cCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCC--ceEEE
Confidence 999 44433333332 3456889999999999999999999999999754 4444443 3445677777754 36899
Q ss_pred EEeCCCcEEEEeCCCCcEEEE---EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCC------cc
Q 007855 401 AGMSDKKIVQWDMNTKEITQE---YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM------HS 471 (587)
Q Consensus 401 sg~~dg~I~iwD~~t~~~~~~---~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~------~~ 471 (587)
+|+.|+.|++||+++.+.... ..+|...|++++|+|++.+|++++.|+.|+|||+........+.. |. ..
T Consensus 268 s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~ 346 (435)
T 4e54_B 268 TASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIP-HPHRHFQHLT 346 (435)
T ss_dssp EEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECC-CCCCCCSSSC
T ss_pred EecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEec-ccccccccce
Confidence 999999999999988754333 357999999999999999999999999999999998766555432 21 12
Q ss_pred eeEEEEeCCCCEEEEEEC------------CCeEEEEEcCCceeecccceecccccccceEEE-EEcCCCCEEEEEcCCC
Q 007855 472 MPSISLHPNTNWLAAQSL------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVMSGDGEG 538 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~s~------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l-~~spdg~~L~sgs~dG 538 (587)
+..+.|+|++.++++++. ++.|++||..++..+... ..+| ...|.++ +|+|+|.+|++|+ |+
T Consensus 347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l--~~~~--~~~v~s~~~fspdg~~lasg~-d~ 421 (435)
T 4e54_B 347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQL--YDPE--SSGISSLNEFNPMGDTLASAM-GY 421 (435)
T ss_dssp CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEE--CCSS--CCCCCCEEEECTTSSCEEEEC-SS
T ss_pred eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEE--eCCC--CCcEEEEEEECCCCCEEEEEc-CC
Confidence 345678888877777653 357999999887655322 2233 2345555 7999999999886 78
Q ss_pred cEEEEeCCCCeeE
Q 007855 539 KCWFWDWKSCKVF 551 (587)
Q Consensus 539 ~I~vwd~~t~~~~ 551 (587)
.|+||++++++..
T Consensus 422 ~i~iW~~~~gk~r 434 (435)
T 4e54_B 422 HILIWSQQEARTR 434 (435)
T ss_dssp EEEECCCC-----
T ss_pred cEEEEECCcCeee
Confidence 9999999988753
No 104
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.9e-28 Score=256.23 Aligned_cols=264 Identities=18% Similarity=0.217 Sum_probs=221.6
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeE-EEEeCCCeEEEEECCCCcEEEEeecCCcceEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKF-LTASYDKNIKYWDTETGQVIRTFSTGKIPYVV 387 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l-~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~ 387 (587)
+.++++++.|+.|++||+ .+++++..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++.+..+..+..+..+
T Consensus 2 ~~l~vs~~~d~~v~v~d~-~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~ 79 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDV-TSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGV 79 (391)
T ss_dssp EEEEEEETTTTEEEEEET-TTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEE
T ss_pred CEEEEEcCCCCEEEEEEC-CCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccce
Confidence 457899999999999999 7888888888775 48999999999977 56778999999999999999999988888888
Q ss_pred EEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE-EEEECCCCEEEEECCCCeEEEEeec
Q 007855 388 KLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF-VTSSDDKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 388 ~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~ 466 (587)
++++++. .+++++..++.|++||+.+++.+..+..+ ..+.+++|+|+++.| ++++.++.|++||+.++..+..+..
T Consensus 80 ~~spdg~--~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 156 (391)
T 1l0q_A 80 AVSPDGK--QVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV 156 (391)
T ss_dssp EECTTSS--EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EECCCCC--EEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec
Confidence 8888653 45566667899999999999988887654 578999999999987 6777899999999999988877643
Q ss_pred CCCcceeEEEEeCCCCEE-EEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc---CCCcEEE
Q 007855 467 PHMHSMPSISLHPNTNWL-AAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD---GEGKCWF 542 (587)
Q Consensus 467 ~~~~~i~~i~~sp~g~~l-~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs---~dG~I~v 542 (587)
...+.+++|+|++++| ++++.++.|++||+.++....... . ...+.+++|+|+|++|++++ .++.|++
T Consensus 157 --~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~---~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~ 228 (391)
T 1l0q_A 157 --GRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK---V---EAAPSGIAVNPEGTKAYVTNVDKYFNTVSM 228 (391)
T ss_dssp --CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE---C---SSEEEEEEECTTSSEEEEEEECSSCCEEEE
T ss_pred --CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe---c---CCCccceEECCCCCEEEEEecCcCCCcEEE
Confidence 3467899999999987 566788999999998875543221 1 24567899999999999888 6899999
Q ss_pred EeCCCCeeEEEEecCCCCEEEEEEcCCCCCEE-EEEECCCcEEEcC
Q 007855 543 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKV-ATCGWDGLIKYWD 587 (587)
Q Consensus 543 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l-~s~g~DG~I~iWD 587 (587)
||+.+++.+..+..|.. +.+++|+| ++.+| ++++.|+.|++||
T Consensus 229 ~d~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~s~~~d~~v~v~d 272 (391)
T 1l0q_A 229 IDTGTNKITARIPVGPD-PAGIAVTP-DGKKVYVALSFXNTVSVID 272 (391)
T ss_dssp EETTTTEEEEEEECCSS-EEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EECCCCeEEEEEecCCC-ccEEEEcc-CCCEEEEEcCCCCEEEEEE
Confidence 99999999999987764 78999999 55555 7888999999997
No 105
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.9e-31 Score=280.49 Aligned_cols=266 Identities=12% Similarity=0.150 Sum_probs=214.8
Q ss_pred EccCCCcEEEEEeCCCeEEEEecCCCCeeeEEE-cccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCC---Cc---EE
Q 007855 304 FFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY-MGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTET---GQ---VI 375 (587)
Q Consensus 304 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t---~~---~i 375 (587)
|+|+ +..+++++ +|+. .++++..+ .+|...|++++|+| ++.+|++|+.||+|+|||+.+ +. ..
T Consensus 35 f~~~-~~~~~~~~------~w~~--~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~ 105 (437)
T 3gre_A 35 FGPI-QEIVRSPN------MGNL--RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSS 105 (437)
T ss_dssp GCCC-CCCCCCCC------GGGC--CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCS
T ss_pred cCCc-cccccccc------cccc--cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCccccee
Confidence 5666 66666654 4875 67888888 89999999999999 999999999999999999876 43 34
Q ss_pred EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---CCcEEEEEcc------------CCCCeeEEE--EecCC
Q 007855 376 RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQ------------HLGAVNTIT--FVDNN 438 (587)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---t~~~~~~~~~------------h~~~I~~i~--~sp~~ 438 (587)
..+.+...+.+++|.+++ .+|++|+.||.|++||+. +++.+..+.. +...+.++. +++++
T Consensus 106 ~~~~h~~~v~~~~~~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (437)
T 3gre_A 106 LTYDCSSTVTQITMIPNF---DAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK 182 (437)
T ss_dssp EEEECSSCEEEEEECTTS---SEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC
T ss_pred eeccCCCCEEEEEEeCCC---CEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCC
Confidence 445556677788888743 589999999999999994 5544443321 456677777 45789
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecC-CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccccccc
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEP-HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
.+|++++.|+.|++||+++...+..+... |...|.+++|+|++.+|++++.||.|++||++.+..+..... .+ ..
T Consensus 183 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~--~~ 258 (437)
T 3gre_A 183 SLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF--GD--HA 258 (437)
T ss_dssp EEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC--TT--CE
T ss_pred CEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec--CC--CC
Confidence 99999999999999999999988887654 788999999999999999999999999999988655432211 23 34
Q ss_pred ceEEEEEc----CCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC--------------------------CCCEEEEEEc
Q 007855 518 YACQVNFS----PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH--------------------------EGVCIGCEWH 567 (587)
Q Consensus 518 ~i~~l~~s----pdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h--------------------------~~~V~~v~~s 567 (587)
.|.+++|+ |++.+|++|+.||.|++||+.+++++..+.+| ...|++++|+
T Consensus 259 ~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~ 338 (437)
T 3gre_A 259 PITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS 338 (437)
T ss_dssp EEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE
T ss_pred ceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC
Confidence 68888554 57889999999999999999999998888755 3457788888
Q ss_pred CCCCCEEEEEECCCcEEEcC
Q 007855 568 PLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 568 p~~~~~l~s~g~DG~I~iWD 587 (587)
+ +.+|++|+.||.|++||
T Consensus 339 ~--~~~l~s~~~d~~i~~wd 356 (437)
T 3gre_A 339 N--DKILLTDEATSSIVMFS 356 (437)
T ss_dssp T--TEEEEEEGGGTEEEEEE
T ss_pred C--ceEEEecCCCCeEEEEE
Confidence 3 47899999999999997
No 106
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=6.7e-30 Score=271.78 Aligned_cols=246 Identities=20% Similarity=0.360 Sum_probs=199.1
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-----------EEEEeecC-------------CcceEEEEccCC
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTG-------------KIPYVVKLNPDD 393 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-----------~i~~~~~~-------------~~~~~~~~~~~~ 393 (587)
.|.+.|++++|+|+|++|++|+.||.|+|||+.+++ ++..+..+ ..+..++|.+..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 467899999999999999999999999999999877 46666654 446788888864
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcEE---------------------------------------EE-EccCCCCeeEEE
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKEIT---------------------------------------QE-YDQHLGAVNTIT 433 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~~~---------------------------------------~~-~~~h~~~I~~i~ 433 (587)
. ..+|++++.|+.|++||+.++... .. ..+|...|++++
T Consensus 106 ~-~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 106 N-AAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp S-SSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred C-cceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 2 257999999999999999764432 12 367999999999
Q ss_pred EecCCCEEEEEECCCCEEEEECCC-CeEEEEe------ecCCCcceeEEEEeCCC-CEEEEEECCCeEEEEEcCCceee-
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGI-PVVIKYI------SEPHMHSMPSISLHPNT-NWLAAQSLDNQILIYSTRERFQL- 504 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~-~~~~~~~------~~~~~~~i~~i~~sp~g-~~l~~~s~dg~I~iwd~~~~~~~- 504 (587)
|+|++++|+++ .|+.|++||++. ...+..+ ...|...|.+++|+|++ .+|++++.||.|++||++++...
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 899999999984 3344332 34578889999999998 99999999999999999876532
Q ss_pred cccceeccccc----------ccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-CeeEEEEecCCCC-------------
Q 007855 505 NKKKRFAGHIV----------AGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-CKVFRTLKCHEGV------------- 560 (587)
Q Consensus 505 ~~~~~~~~~~~----------~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t-~~~~~~l~~h~~~------------- 560 (587)
.....+.++.. ...+.+++|+|+|++|++++. |.|++||+++ ++++..+.+|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i 342 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCI 342 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGG
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccccccccc
Confidence 11234444421 137899999999999999999 9999999997 8889999888642
Q ss_pred --EEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 561 --CIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 561 --V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+..++|+| ++.+|++|+.||.|+|||
T Consensus 343 ~~~~~~~~s~-~~~~l~s~s~dg~v~iwd 370 (447)
T 3dw8_B 343 FDKFECCWNG-SDSVVMTGSYNNFFRMFD 370 (447)
T ss_dssp GCCCCEEECT-TSSEEEEECSTTEEEEEE
T ss_pred ccceEEEECC-CCCEEEEeccCCEEEEEE
Confidence 33499999 778999999999999997
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=8.4e-29 Score=263.79 Aligned_cols=283 Identities=18% Similarity=0.362 Sum_probs=214.8
Q ss_pred ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCee
Q 007855 253 STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKC 332 (587)
Q Consensus 253 ~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~ 332 (587)
..+.+....|..++.|.. ...+++.++.+|...|++++| + +.+|++|+.||+|++||+ .++++
T Consensus 143 ~~~l~~g~~dg~i~iwd~-------------~~~~~~~~~~~h~~~v~~l~~--~-~~~l~sg~~dg~i~vwd~-~~~~~ 205 (435)
T 1p22_A 143 DQKIVSGLRDNTIKIWDK-------------NTLECKRILTGHTGSVLCLQY--D-ERVIITGSSDSTVRVWDV-NTGEM 205 (435)
T ss_dssp SSEEEEEESSSCEEEEES-------------SSCCEEEEECCCSSCEEEEEC--C-SSEEEEEETTSCEEEEES-SSCCE
T ss_pred CCEEEEEeCCCeEEEEeC-------------CCCeEEEEEcCCCCcEEEEEE--C-CCEEEEEcCCCeEEEEEC-CCCcE
Confidence 344556666777777743 335678899999999999999 4 789999999999999999 78899
Q ss_pred eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE--EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 333 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 333 ~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~--~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
+..+.+|...|.+++|+ +.+|++|+.||.|++||+.++..+. ....++...+.++.+ .+.++++|+.||.|++
T Consensus 206 ~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~v 280 (435)
T 1p22_A 206 LNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKV 280 (435)
T ss_dssp EEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEE
T ss_pred EEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEE
Confidence 99999999999999997 4599999999999999999887542 222333333333333 2368999999999999
Q ss_pred EeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC
Q 007855 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 490 (587)
Q Consensus 411 wD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d 490 (587)
||+++++.+..+..|...|.++.+. +.+|++++.||.|++||++++..+..+. .|...|.++++ ++.+|++++.|
T Consensus 281 wd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~d 355 (435)
T 1p22_A 281 WNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYD 355 (435)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETT
T ss_pred EECCcCcEEEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCC
Confidence 9999999999999999999999995 6799999999999999999998887775 58889999988 78899999999
Q ss_pred CeEEEEEcCCceeec------ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEE
Q 007855 491 NQILIYSTRERFQLN------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 564 (587)
Q Consensus 491 g~I~iwd~~~~~~~~------~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v 564 (587)
|.|++||+....... ....+.+| ...|.+++| ++.+|++|+.||.|++||+.+........ ...+..++
T Consensus 356 g~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~-~~~~~~~~ 430 (435)
T 1p22_A 356 GKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEP-PRSPSRTY 430 (435)
T ss_dssp SCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECCSSSEEEEEC--------------------
T ss_pred CcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCC-CCCCccce
Confidence 999999987643110 23344555 466778888 78899999999999999998876544433 22344555
Q ss_pred EEc
Q 007855 565 EWH 567 (587)
Q Consensus 565 ~~s 567 (587)
.|.
T Consensus 431 ~~~ 433 (435)
T 1p22_A 431 TYI 433 (435)
T ss_dssp ---
T ss_pred eee
Confidence 554
No 108
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.6e-29 Score=257.15 Aligned_cols=241 Identities=12% Similarity=0.153 Sum_probs=204.6
Q ss_pred EEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc----EEEEeecCCcceEEEEccCCCCCc-EEEEEeCCCcE
Q 007855 334 RTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQN-ILLAGMSDKKI 408 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~----~i~~~~~~~~~~~~~~~~~~~~~~-~l~sg~~dg~I 408 (587)
....+|...|++++|+|++.+|++++.|+.|+||++.++. ..........+.+++|.++ +. +|++|+.||.|
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~dg~i 81 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEI 81 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC---CCcEEEEEcCCCeE
Confidence 3345899999999999999999999999999999999887 5555556667778888885 36 89999999999
Q ss_pred EEEeC-CCCcEEEEEcc--CCCCeeEEEEecCCCEEEEEECCCCEEEEECCC---------CeEEEEeecCCCcceeEEE
Q 007855 409 VQWDM-NTKEITQEYDQ--HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI---------PVVIKYISEPHMHSMPSIS 476 (587)
Q Consensus 409 ~iwD~-~t~~~~~~~~~--h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~---------~~~~~~~~~~~~~~i~~i~ 476 (587)
++||+ .+++. ..+.. |...|.+++|+| +..|++++.|+.|++||++. ...+..+ .+...+.+++
T Consensus 82 ~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~ 157 (342)
T 1yfq_A 82 LKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT--KVKNKIFTMD 157 (342)
T ss_dssp EEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS--SSCCCEEEEE
T ss_pred EEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE--eeCCceEEEE
Confidence 99999 87765 67778 999999999999 99999999999999999886 5444444 3778899999
Q ss_pred EeCCCCEEEEEECCCeEEEEEcCC-ceeecccceecccccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCC------
Q 007855 477 LHPNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSC------ 548 (587)
Q Consensus 477 ~sp~g~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~L~sgs~dG~I~vwd~~t~------ 548 (587)
|+|++ |++++.++.|++||++. ..... ......+ ...+.+++|+| ++++|++++.+|.|++|++...
T Consensus 158 ~~~~~--l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~--~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 232 (342)
T 1yfq_A 158 TNSSR--LIVGMNNSQVQWFRLPLCEDDNG-TIEESGL--KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNS 232 (342)
T ss_dssp ECSSE--EEEEESTTEEEEEESSCCTTCCC-EEEECSC--SSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTC
T ss_pred ecCCc--EEEEeCCCeEEEEECCccccccc-eeeecCC--CCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccc
Confidence 99887 99999999999999987 43221 1112222 45688999999 9999999999999999999887
Q ss_pred eeEEEEecCCC---------CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 549 KVFRTLKCHEG---------VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 549 ~~~~~l~~h~~---------~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+....+..|.. .|.+++|+| ++.+|++++.||.|++||
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~vwd 279 (342)
T 1yfq_A 233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSP-RHKFLYTAGSDGIISCWN 279 (342)
T ss_dssp TTCEEEECCCCCTTCCSSCCCEEEEEECT-TTCCEEEEETTSCEEEEE
T ss_pred ccceeeecccccccccccceeEEEEEEcC-CCCEEEEecCCceEEEEc
Confidence 78888988865 999999999 778999999999999997
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=9.5e-29 Score=251.68 Aligned_cols=302 Identities=15% Similarity=0.237 Sum_probs=216.7
Q ss_pred cCCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccC-CCcEEEEEe
Q 007855 238 KGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAG 316 (587)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~-~g~~L~sgs 316 (587)
.++...+......+...+.+....|..+|.|...... ...+++.++.+|...|++|+|+|. ++.+|++|+
T Consensus 8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~ 78 (351)
T 3f3f_A 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT---------SNWELSDSWRAHDSSIVAIDWASPEYGRIIASAS 78 (351)
T ss_dssp CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS---------CCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEE
T ss_pred cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC---------CcceecceeccCCCcEEEEEEcCCCCCCEEEEEc
Confidence 3455555556666777788888999999999775422 123567889999999999999994 289999999
Q ss_pred CCCeEEEEecCCCC---------eeeEEEcccCCceeeEEEecC--CCeEEEEeCCCeEEEEECCCCcEEEEee------
Q 007855 317 MDTKVKIWDVFNSG---------KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFS------ 379 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~---------~~~~~~~~h~~~V~~l~fs~d--g~~l~s~s~Dg~I~vWd~~t~~~i~~~~------ 379 (587)
.||.|+|||+ ..+ +.+..+.+|...|.+++|+|+ +.+|++++.||.|++||+.+++.+..+.
T Consensus 79 ~dg~v~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 157 (351)
T 3f3f_A 79 YDKTVKLWEE-DPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMK 157 (351)
T ss_dssp TTSCEEEEEE-CTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEE
T ss_pred CCCeEEEEec-CCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccc
Confidence 9999999999 444 668888999999999999999 9999999999999999999876543322
Q ss_pred --------cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE--EEEEccCCCCeeEEEEecCC----CEEEEEE
Q 007855 380 --------TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI--TQEYDQHLGAVNTITFVDNN----RRFVTSS 445 (587)
Q Consensus 380 --------~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~--~~~~~~h~~~I~~i~~sp~~----~~l~s~s 445 (587)
......++.+.|......++++++.++.+.+|+...+.. +..+.+|...|++++|+|++ ++|++++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 158 VLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp SCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEE
T ss_pred ccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEc
Confidence 234556888888644567999999999999998888765 67788899999999999998 8999999
Q ss_pred CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC----CCeEEEEEcCCceeecccceecccccccceEE
Q 007855 446 DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
.||.|++||++.......... ....+......+....+..+.. ...+.+|+.. .......+.+| ...|.+
T Consensus 238 ~dg~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h--~~~v~~ 311 (351)
T 3f3f_A 238 KDGRIRIFKITEKLSPLASEE-SLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNL---QVELLSEHDDH--NGEVWS 311 (351)
T ss_dssp TTSCEEEEEEEECC----------------------------------------CCSE---EEEEEEEECTT--SSCEEE
T ss_pred CCCeEEEEeCCCCcCccccCC-cccceeccCCCcccccccccccccccceeeeecccc---cccEEEEEecc--cccEEE
Confidence 999999999987654433321 2223333344444444444332 2334444333 23334555666 567999
Q ss_pred EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 522 VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 522 l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
++|+|++++|++|+.||.|+||++.+++.+..+.
T Consensus 312 ~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~ 345 (351)
T 3f3f_A 312 VSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMS 345 (351)
T ss_dssp EEECSSSCCEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred EEEcCCCCEEEEecCCCcEEEEecCcCcchhhee
Confidence 9999999999999999999999999876555443
No 110
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=1.1e-27 Score=250.46 Aligned_cols=278 Identities=15% Similarity=0.156 Sum_probs=226.8
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcE-EEEEeCCCeEEEEecCCCCeee
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHL-ILSAGMDTKVKIWDVFNSGKCM 333 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~-L~sgs~Dg~I~iWd~~~~~~~~ 333 (587)
+......|..++.|-.. ..+++..+.+|. .+.+++|+|+ +.+ +++++.|+.|++||+ .+++++
T Consensus 4 l~vs~~~d~~v~v~d~~-------------~~~~~~~~~~~~-~~~~~~~s~d-g~~l~~~~~~d~~i~v~d~-~~~~~~ 67 (391)
T 1l0q_A 4 AYIANSESDNISVIDVT-------------SNKVTATIPVGS-NPMGAVISPD-GTKVYVANAHSNDVSIIDT-ATNNVI 67 (391)
T ss_dssp EEEEETTTTEEEEEETT-------------TTEEEEEEECSS-SEEEEEECTT-SSEEEEEEGGGTEEEEEET-TTTEEE
T ss_pred EEEEcCCCCEEEEEECC-------------CCeEEEEeecCC-CcceEEECCC-CCEEEEECCCCCeEEEEEC-CCCeEE
Confidence 34455666777777432 235677787775 4899999999 655 578889999999999 788888
Q ss_pred EEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEe
Q 007855 334 RTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD 412 (587)
Q Consensus 334 ~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD 412 (587)
..+..+. .|.+++|+|++++|++++ .++.|++||+.+++.+..+..+..+..+.+++++. .++++++.++.|++||
T Consensus 68 ~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~v~~~d 144 (391)
T 1l0q_A 68 ATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGK--KLYVTNNGDKTVSVIN 144 (391)
T ss_dssp EEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSS--EEEEEETTTTEEEEEE
T ss_pred EEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCC--EEEEEeCCCCEEEEEE
Confidence 8887665 899999999999886554 67999999999999999998888888888888643 4557888899999999
Q ss_pred CCCCcEEEEEccCCCCeeEEEEecCCCEE-EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE---
Q 007855 413 MNTKEITQEYDQHLGAVNTITFVDNNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS--- 488 (587)
Q Consensus 413 ~~t~~~~~~~~~h~~~I~~i~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s--- 488 (587)
+.+++.+..+..+ ..+.+++|+|++++| ++++.++.|++||+++......+. +...+.+++|+|++++|++++
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~ 221 (391)
T 1l0q_A 145 TVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYVTNVDK 221 (391)
T ss_dssp TTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEEEEECS
T ss_pred CCCCcEEEEEecC-CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEEEecCc
Confidence 9999988888765 567999999999887 566788999999999998877764 456789999999999999988
Q ss_pred CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEE-EEEcCCCcEEEEeCCCCeeEEEEecCCCC
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L-~sgs~dG~I~vwd~~t~~~~~~l~~h~~~ 560 (587)
.++.|++||+.++..+.. +..+ ..+.+++|+|+|++| ++++.++.|++||+.+++++..+..|..+
T Consensus 222 ~~~~v~~~d~~~~~~~~~---~~~~---~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~ 288 (391)
T 1l0q_A 222 YFNTVSMIDTGTNKITAR---IPVG---PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKNP 288 (391)
T ss_dssp SCCEEEEEETTTTEEEEE---EECC---SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSE
T ss_pred CCCcEEEEECCCCeEEEE---EecC---CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCC
Confidence 689999999988755432 3323 246779999999987 67788999999999999999999877654
No 111
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.97 E-value=6.3e-29 Score=259.05 Aligned_cols=287 Identities=11% Similarity=0.031 Sum_probs=214.2
Q ss_pred ccccccceEeecccc-------cccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEE----
Q 007855 247 EHVEDKSTFHGKEEK-------DYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA---- 315 (587)
Q Consensus 247 ~~~~~~~~~~~~~~~-------d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sg---- 315 (587)
..+.+.+.+.+.+.. +..+|.|........... .+......+|.+|...|.+++++. ..+++|
T Consensus 20 v~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~---~~~~~~~~~l~~~~~~v~s~~~~~---~~~~~g~~~~ 93 (365)
T 4h5i_A 20 AKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE---QFHILSEFALEDNDDSPTAIDASK---GIILVGCNEN 93 (365)
T ss_dssp EEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH---HEEEEEEEECCTTSCCCCEEEEET---TEEEEECCCC
T ss_pred EEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee---eeeeeeEEEccCCCCceEEEEeCC---CEEEEEECCC
Confidence 344555666665543 445788877654321110 011112346789999999998864 456655
Q ss_pred -------eCCCeEEEEecCCCCeeeEEE--------cccCCceeeEEEecCCCeEEEEe--CCCeEEEEECCCCcEEEEe
Q 007855 316 -------GMDTKVKIWDVFNSGKCMRTY--------MGHSKAVRDISFCNDGTKFLTAS--YDKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 316 -------s~Dg~I~iWd~~~~~~~~~~~--------~~h~~~V~~l~fs~dg~~l~s~s--~Dg~I~vWd~~t~~~i~~~ 378 (587)
+.|+.|++|++......+... ..+...+++++|+|||++|++++ .|++|+|||+.+++++..+
T Consensus 94 ~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~ 173 (365)
T 4h5i_A 94 STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI 173 (365)
T ss_dssp HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE
T ss_pred ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe
Confidence 457889999984333322221 13445689999999999987554 7899999999999999999
Q ss_pred ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE--EccCCCCeeEEEEecCCCEEEEEECCC----CEEE
Q 007855 379 STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE--YDQHLGAVNTITFVDNNRRFVTSSDDK----SLRV 452 (587)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~--~~~h~~~I~~i~~sp~~~~l~s~s~Dg----~I~i 452 (587)
.....+..++|+|++ .++++++ ++.+.+|+..++..+.. ...|...|.+++|+|++.++++++.|+ .+++
T Consensus 174 ~~~~~V~~v~fspdg---~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~ 249 (365)
T 4h5i_A 174 ETRGEVKDLHFSTDG---KVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTK 249 (365)
T ss_dssp ECSSCCCEEEECTTS---SEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEE
T ss_pred CCCCceEEEEEccCC---ceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEee
Confidence 888888999999865 4666666 56677777777765543 456888999999999999999999887 5888
Q ss_pred EECCCCeEEE---EeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 453 WEFGIPVVIK---YISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 453 wd~~~~~~~~---~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
|++....... .....|...|.+++|+|+|++||+|+.|+.|+|||+.++..+.. .+.+| ...|++++|||||+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~--~~~gH--~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 250 ISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKI--FKQAH--SFAITEVTISPDST 325 (365)
T ss_dssp EEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEE--ETTSS--SSCEEEEEECTTSC
T ss_pred cccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEE--ecCcc--cCCEEEEEECCCCC
Confidence 9887654321 22235788999999999999999999999999999998765532 23566 57799999999999
Q ss_pred EEEEEcCCCcEEEEeCCC
Q 007855 530 FVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 530 ~L~sgs~dG~I~vwd~~t 547 (587)
+|++|+.|++|+||++..
T Consensus 326 ~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEEEETTSEEEEEECCT
T ss_pred EEEEEeCCCeEEEEEcCC
Confidence 999999999999999964
No 112
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.4e-27 Score=241.38 Aligned_cols=261 Identities=20% Similarity=0.337 Sum_probs=211.8
Q ss_pred ccccceeeeeCCCCcccCCCcccCCCceEEEE--cCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc
Q 007855 261 KDYQGRSWVAPPKDAKAANDHCYIPKRLVHTW--SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG 338 (587)
Q Consensus 261 ~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl--~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~ 338 (587)
.|..+|.|-.. ..++++++ .+|...|++|+|+|+ +++|++|+.||+|+||++ .+++++..+.+
T Consensus 43 ~D~tV~iWd~~-------------tg~~~~~~~~~~~~~~V~~v~~~~~-~~~l~sgs~Dg~v~iw~~-~~~~~~~~~~~ 107 (318)
T 4ggc_A 43 LDNSVYLWSAS-------------SGDILQLLQMEQPGEYISSVAWIKE-GNYLAVGTSSAEVQLWDV-QQQKRLRNMTS 107 (318)
T ss_dssp ETTEEEEEETT-------------TCCEEEEEECCSTTCCEEEEEECTT-SSEEEEEETTSEEEEEET-TTTEEEEEEEC
T ss_pred eCCEEEEEECC-------------CCCEEEEEEecCCCCeEEEEEECCC-CCEEEEEECCCcEEEeec-CCceeEEEecC
Confidence 47778888543 23455554 478889999999999 999999999999999999 78999999999
Q ss_pred cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE-EEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~-i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
|...+.++.+ ++..|++++.++.+++|+...... +..+..+ .....+.+.+.+ .+|++++.|+.|++||++++
T Consensus 108 h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~s~~~d~~i~iwd~~~~ 182 (318)
T 4ggc_A 108 HSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG---RHLASGGNDNLVNVWPSAPG 182 (318)
T ss_dssp CSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS---SEEEEEETTSCEEEEESSCB
T ss_pred ccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC---CEEEEEecCcceeEEECCCC
Confidence 9998877665 567999999999999999987654 4444433 334455555543 68999999999999999886
Q ss_pred c----EEEEEccCCCCeeEEEEecCCCEE---EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-
Q 007855 417 E----ITQEYDQHLGAVNTITFVDNNRRF---VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS- 488 (587)
Q Consensus 417 ~----~~~~~~~h~~~I~~i~~sp~~~~l---~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s- 488 (587)
+ .......+.+.|.++.+++.+..+ ++++.++.|++||.......... .+...+..+.++|.+..+++++
T Consensus 183 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~sg 260 (318)
T 4ggc_A 183 EGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAV--DAHSQVCSILWSPHYKELISGHG 260 (318)
T ss_dssp TTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEE--ECSSCEEEEEEETTTTEEEEEEC
T ss_pred cccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccc--cceeeeeeeeecccccceEEEEE
Confidence 5 345566788999999999876543 35667899999999988877665 4667899999999999888765
Q ss_pred -CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 489 -LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 489 -~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
.|+.|++||+.++..+ ..+.+| ...|.+++|+|+|++|++|+.||.|+|||+...
T Consensus 261 ~~d~~i~iwd~~~~~~~---~~l~gH--~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 261 FAQNQLVIWKYPTMAKV---AELKGH--TSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TTTCCEEEEETTTCCEE---EEECCC--SSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred cCCCEEEEEECCCCcEE---EEEcCC--CCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 7899999999887655 456677 578999999999999999999999999998764
No 113
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.9e-29 Score=270.37 Aligned_cols=265 Identities=11% Similarity=0.056 Sum_probs=210.1
Q ss_pred cCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC
Q 007855 293 SGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 293 ~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~ 372 (587)
+.-..+|.+|+|+|+ |.++||++.|++|+ |. ...+.+ .+|...|.+++|+|+| .++.+.+|+.+..
T Consensus 12 ~~~~~~v~sv~~SpD-G~~iASas~D~TV~--d~-~~~~~l---~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~ 77 (588)
T 2j04_A 12 KEFEDWKNNLTWARD-GTLYLTTFPDISIG--QP-KYAKDI---NCNSKNLFHVKEFPLE-------FENKLDFELAQQN 77 (588)
T ss_dssp CCCSSSSCCEEECTT-SCEEEECSSSEEEE--EE-CCCSCC---SSBGGGTEEEEEECCC-------CCCTTTTSCCCSS
T ss_pred hHhhccEEEEEECCC-CCEEEEEcCCceee--cc-ccccee---cCCCccEEEEEECCCC-------CcceEEEEeCCCc
Confidence 345678999999999 99999999999999 75 445444 7999999999999998 4555555554322
Q ss_pred cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC-----CeeEEEEecCCCEEEEEECC
Q 007855 373 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-----AVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 373 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~-----~I~~i~~sp~~~~l~s~s~D 447 (587)
. +..+.....+.+++|+|++ .+|++++.||.|++||... ++..+. |.. .|.+++|+|+|++|++|+.|
T Consensus 78 ~-~~~~~~~~~V~~vawSPdG---~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 78 G-LLNSQPVCYPRVCKPSPID---DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp C-SSTTSCSCCEEEEEECSSS---SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred e-EeecCCCCcEEEEEECCCC---CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 2 2222334556778888865 4799999999999999644 666666 665 59999999999999999999
Q ss_pred CCEEEEECCCCe-------EEEEee---cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee-cccccc
Q 007855 448 KSLRVWEFGIPV-------VIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF-AGHIVA 516 (587)
Q Consensus 448 g~I~iwd~~~~~-------~~~~~~---~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~-~~~~~~ 516 (587)
|+|+|||+..+. .+..+. .+|...|.+++|+|+| +++++.|+.|++|++.++........+ .+| .
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h--~ 226 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNAS--R 226 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCC--S
T ss_pred CEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccc--c
Confidence 999999998874 345542 4577899999999999 888999999999999876532112233 244 4
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE--cCCCCCEEEEEECCCcEEEcC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW--HPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~--sp~~~~~l~s~g~DG~I~iWD 587 (587)
..|.+++|+ |++|++++ +|.|++||+.+++......+|...|.+++| +| ++..|++++.||+ ++|.
T Consensus 227 ~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~-d~~~La~a~edG~-klw~ 294 (588)
T 2j04_A 227 RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEK-ESTILLMSNKTSY-KVLL 294 (588)
T ss_dssp SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCS-SCEEEEECSSCEE-EEEE
T ss_pred CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCC-CCCEEEEEcCCCC-EEEe
Confidence 668889999 68999987 699999999998875544489999999999 98 7778999999999 9883
No 114
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.3e-27 Score=241.48 Aligned_cols=288 Identities=14% Similarity=0.141 Sum_probs=195.4
Q ss_pred ceEEEEcCCCC----CeEEEEEccCCC-c-EEEEEeCCCeEEEEecCCCC---eeeEEEcccCCceeeEEEecCCCeEEE
Q 007855 287 RLVHTWSGHTK----GVSAIRFFPKYG-H-LILSAGMDTKVKIWDVFNSG---KCMRTYMGHSKAVRDISFCNDGTKFLT 357 (587)
Q Consensus 287 ~~i~tl~gH~~----~V~~l~~sp~~g-~-~L~sgs~Dg~I~iWd~~~~~---~~~~~~~~h~~~V~~l~fs~dg~~l~s 357 (587)
+++..|+.-.+ .+.++.|-..+. . .+++++ ...|++|+. ... ++++++.+|..+|..|.|.||-.-|++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 103 (356)
T 2w18_A 26 QLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKA-LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVC 103 (356)
T ss_dssp EEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEE-SSSSBEEEEEEEECCSSCEEEECCCTTCCSCEE
T ss_pred eeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEccc-CCCccceeeEEEeccCceeEEEEEcCcccceee
Confidence 45666665544 256666655422 2 556666 579999999 556 888999999888887777774332322
Q ss_pred EeCC----CeEEEEECCC-----CcEEEEeecCCcceEEEEccCCCCCcEEEEEe--CCCcEEEEeC-CCCcEEEEEccC
Q 007855 358 ASYD----KNIKYWDTET-----GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM--SDKKIVQWDM-NTKEITQEYDQH 425 (587)
Q Consensus 358 ~s~D----g~I~vWd~~t-----~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~--~dg~I~iwD~-~t~~~~~~~~~h 425 (587)
.... +.|+..-+.. ++.+.. .++...+..+ ..++++.+++ .|+.|++|++ .+++.+..+..|
T Consensus 104 ~~~~~~~~~~v~sla~spd~~~~~~~l~s--~g~~~~v~~l----~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 104 VALGNLEIREIRALFCSSDDESEKQVLLK--SGNIKAVLGL----TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEECSSSEEEEEEECC------CCEEEEE--EEEEEEEEEE----TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred eeeccccccceEEEEECCCccccccEEEe--CCCeEEEEec----CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 2110 0111100000 111111 1111112222 1234455533 5999999999 558888888899
Q ss_pred CCCeeEEEEec---CCCEEEEEECCCCEEEEECCCCeEEEEeecCC--CcceeEEEEeCCCCEE------------EEEE
Q 007855 426 LGAVNTITFVD---NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWL------------AAQS 488 (587)
Q Consensus 426 ~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~i~~i~~sp~g~~l------------~~~s 488 (587)
...++.++|++ ++..|++++.|++|+|||+.+++.++.+...+ ...+.+++|+|+|.++ ++|+
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs 257 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRS 257 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccC
Confidence 99999999999 78999999999999999999999999886433 3467788999999876 5678
Q ss_pred CCCeEEEEEcCCceeecccce--ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEE-EEE
Q 007855 489 LDNQILIYSTRERFQLNKKKR--FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCI-GCE 565 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~-~v~ 565 (587)
.|++|++||..++..+..... ..+|. ..+.+..+ ++.++++|+.||+|+|||+.+++++.++.+|...+. .++
T Consensus 258 ~D~tIklWd~~tgk~l~v~~~~~p~Gh~--~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va 333 (356)
T 2w18_A 258 PVFQLIVINPKTTLSVGVMLYCLPPGQA--GRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK 333 (356)
T ss_dssp CCEEEEEEETTTTEEEEEEEECCCTTCC--CCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred CCcEEEEEECCCCEEEEEEEeeccCCCc--ceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence 899999999988765532211 12442 22333334 388999999999999999999999999999987655 589
Q ss_pred EcCCCCCEEEEEECCCcEEEcC
Q 007855 566 WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 566 ~sp~~~~~l~s~g~DG~I~iWD 587 (587)
|+| ++.+|+||+.|++|+|||
T Consensus 334 fSP-DG~~LaSGS~D~TIklWd 354 (356)
T 2w18_A 334 WSG-TDSHLLAGQKDGNIFVYH 354 (356)
T ss_dssp ECS-SSSEEEEECTTSCEEEEE
T ss_pred ECC-CCCEEEEEECCCcEEEec
Confidence 999 788999999999999997
No 115
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=7.7e-29 Score=282.77 Aligned_cols=251 Identities=20% Similarity=0.294 Sum_probs=205.5
Q ss_pred eEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC--CCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEE
Q 007855 333 MRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIV 409 (587)
Q Consensus 333 ~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~--t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~ 409 (587)
+..+.+|.+.|++++|+|++++|++|+.||.|+|||+. +++.+..+..+ ..+.++.|+++. .+++|++|+.||.|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~~~l~s~s~Dg~I~ 80 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPK-FGTILASCSYDGKVL 80 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTT-SCSEEEEEETTSCEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCC-CCCEEEEEeCCCeEE
Confidence 35678999999999999999999999999999999998 44566666543 445677777652 246899999999999
Q ss_pred EEeCCCCc--EEEEEccCCCCeeEEEEecC--CCEEEEEECCCCEEEEECCCCeE-EEEeecCCCcceeEEEEeC-----
Q 007855 410 QWDMNTKE--ITQEYDQHLGAVNTITFVDN--NRRFVTSSDDKSLRVWEFGIPVV-IKYISEPHMHSMPSISLHP----- 479 (587)
Q Consensus 410 iwD~~t~~--~~~~~~~h~~~I~~i~~sp~--~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~i~~i~~sp----- 479 (587)
+||+.++. .+..+..|...|++++|+|+ +..|++++.||.|++||++.... .......|...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77788899999999999999 99999999999999999987622 1122235888999999999
Q ss_pred --------CCCEEEEEECCCeEEEEEcCCceee-cccceecccccccceEEEEEcCC---CCEEEEEcCCCcEEEEeCCC
Q 007855 480 --------NTNWLAAQSLDNQILIYSTRERFQL-NKKKRFAGHIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 480 --------~g~~l~~~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~i~~l~~spd---g~~L~sgs~dG~I~vwd~~t 547 (587)
++.+|++++.||.|++||+++.... .....+.+| ...|.+++|+|+ +.+|++|+.||.|++||+.+
T Consensus 161 ~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h--~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH--SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp ------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC--SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred ccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC--CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 5899999999999999999765322 223445556 577999999999 99999999999999999988
Q ss_pred Ce-----eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 548 CK-----VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 548 ~~-----~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+. .+.....|...|++++|+| ++.+|++++.||.|+|||
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~l~s~s~Dg~I~vwd 282 (753)
T 3jro_A 239 EQGPWKKTLLKEEKFPDVLWRASWSL-SGNVLALSGGDNKVTLWK 282 (753)
T ss_dssp SSSCCBCCBSSSSCCSSCCCCEEECT-TTCCEEEECSSSCEECCB
T ss_pred CCCcceeEEeccCCCCCceEEEEEcC-CCCEEEEEcCCCEEEEEe
Confidence 64 3333455888999999999 778999999999999997
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=7.2e-28 Score=249.94 Aligned_cols=247 Identities=13% Similarity=0.108 Sum_probs=185.9
Q ss_pred EEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEE
Q 007855 323 IWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAG 402 (587)
Q Consensus 323 iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg 402 (587)
||++ ....++..+..|...|++++|+|+|++|++|+.++ ++||++.+++.+...... ...++.+.+... .++++|
T Consensus 3 i~s~-~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~ 77 (355)
T 3vu4_A 3 LGSM-ITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR-HLSKVRMLHRTN--YVAFVT 77 (355)
T ss_dssp -----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS-CCCEEEECTTSS--EEEEEC
T ss_pred cccc-cccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC-CeEEEEEcCCCC--EEEEEE
Confidence 4566 56677777889999999999999999999988765 789999988777665544 355666766542 455778
Q ss_pred eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC-eEEEEeecCCCcceeEEEEeCCC
Q 007855 403 MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNT 481 (587)
Q Consensus 403 ~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g 481 (587)
+.++.|++||+.+++.+..+. +...|.++.|+++ .++++. ++.|++||+... ..+..+.. +...+++++
T Consensus 78 ~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~--~~~~~~-~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~-- 147 (355)
T 3vu4_A 78 GVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSRE--FIVVSY-GDVISVFKFGNPWKRITDDIR----FGGVCEFSN-- 147 (355)
T ss_dssp SSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSS--EEEEEE-TTEEEEEESSTTCCBSSCCEE----EEEEEEEET--
T ss_pred CCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCC--EEEEEE-cCEEEEEECCCCceeeEEecc----CCceEEEEc--
Confidence 889999999999999998886 6779999999875 344443 789999999887 54444322 445566777
Q ss_pred CEEEE--EECCCeEEEEEcCCceee------------cc-cceecccccccceEEEEEcCCCCEEEEEcCCCc-EEEEeC
Q 007855 482 NWLAA--QSLDNQILIYSTRERFQL------------NK-KKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK-CWFWDW 545 (587)
Q Consensus 482 ~~l~~--~s~dg~I~iwd~~~~~~~------------~~-~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~-I~vwd~ 545 (587)
.++++ |+.+|.|++||+.++... .. ...+.+| ...|.+++|+|+|++|++|+.||. |+|||+
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h--~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~ 225 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAH--TNPIKMVRLNRKSDMVATCSQDGTIIRVFKT 225 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCC--SSCEEEEEECTTSSEEEEEETTCSEEEEEET
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEcc--CCceEEEEECCCCCEEEEEeCCCCEEEEEEC
Confidence 66666 578999999999865311 11 3456666 577999999999999999999998 999999
Q ss_pred CCCeeEEEEe-c-CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 546 KSCKVFRTLK-C-HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 546 ~t~~~~~~l~-~-h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++++..+. + |...|.+++|+| ++.+|++++.||+|+|||
T Consensus 226 ~~~~~~~~~~~g~h~~~v~~~~~s~-~~~~l~s~s~d~~v~iw~ 268 (355)
T 3vu4_A 226 EDGVLVREFRRGLDRADVVDMKWST-DGSKLAVVSDKWTLHVFE 268 (355)
T ss_dssp TTCCEEEEEECTTCCSCEEEEEECT-TSCEEEEEETTCEEEEEE
T ss_pred CCCcEEEEEEcCCCCCcEEEEEECC-CCCEEEEEECCCEEEEEE
Confidence 9999999998 5 999999999999 788999999999999997
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=1.9e-27 Score=244.81 Aligned_cols=282 Identities=14% Similarity=0.218 Sum_probs=223.7
Q ss_pred CCCCCCCCcccccc---ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEE
Q 007855 239 GNAGGEKGEHVEDK---STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSA 315 (587)
Q Consensus 239 ~~~~~~~~~~~~~~---~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sg 315 (587)
++...+......+. ..+.+....|..++.|...... ..+...+.+|...|++++|+|+ +++|++|
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~ 104 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG-----------QTIPKAQQMHTGPVLDVCWSDD-GSKVFTA 104 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS-----------CEEEEEEEECSSCEEEEEECTT-SSEEEEE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC-----------ceeEEEeccccCCEEEEEECcC-CCEEEEE
Confidence 44445555556665 4777888889999999765421 2344788999999999999998 9999999
Q ss_pred eCCCeEEEEecCCCCeeeEEEcccCCceeeEEE--ecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCC
Q 007855 316 GMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISF--CNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDD 393 (587)
Q Consensus 316 s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~f--s~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~ 393 (587)
+.||.|+|||+ ..++.+. +..|...|.+++| ++++.+|++++.||.|++||+++++.+..+..+....++.+..
T Consensus 105 ~~dg~v~iwd~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-- 180 (368)
T 3mmy_A 105 SCDKTAKMWDL-SSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY-- 180 (368)
T ss_dssp ETTSEEEEEET-TTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET--
T ss_pred cCCCcEEEEEc-CCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC--
Confidence 99999999999 6666665 5679999999999 8899999999999999999999999999888777655555553
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcEEEEE--ccCCCCeeEEEEecCCCE----EEEEECCCCEEEEECCCC---eEEEEe
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKEITQEY--DQHLGAVNTITFVDNNRR----FVTSSDDKSLRVWEFGIP---VVIKYI 464 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~~~~~~--~~h~~~I~~i~~sp~~~~----l~s~s~Dg~I~iwd~~~~---~~~~~~ 464 (587)
..+++++.++.+.+|+++........ ..+...+.++.+.++... +++++.||.|++|+++.. .....+
T Consensus 181 ---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~ 257 (368)
T 3mmy_A 181 ---PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTF 257 (368)
T ss_dssp ---TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEE
T ss_pred ---CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceee
Confidence 36889999999999999877544332 234456777777766554 999999999999999876 333333
Q ss_pred ecCCCc------------ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE
Q 007855 465 SEPHMH------------SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 465 ~~~~~~------------~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
. .|.. .|.+++|+|++++|++++.||.|++||+.++..+. .+.+| ...+.+++|+|+|++|+
T Consensus 258 ~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~--~~~v~~~~~s~~g~~l~ 331 (368)
T 3mmy_A 258 K-CHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLK---TSEQL--DQPISACCFNHNGNIFA 331 (368)
T ss_dssp E-CSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEE---ECCCC--SSCEEEEEECTTSSCEE
T ss_pred e-eeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEE---EecCC--CCCceEEEECCCCCeEE
Confidence 2 2333 69999999999999999999999999999876653 34445 56789999999999999
Q ss_pred EEcCCCcEEEEeC
Q 007855 533 SGDGEGKCWFWDW 545 (587)
Q Consensus 533 sgs~dG~I~vwd~ 545 (587)
+++.|+..+.|++
T Consensus 332 ~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 332 YASSYDWSKGHEF 344 (368)
T ss_dssp EEECCCSTTCGGG
T ss_pred EEecccccccccc
Confidence 9999886555544
No 118
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.96 E-value=2.8e-28 Score=248.66 Aligned_cols=248 Identities=17% Similarity=0.207 Sum_probs=195.6
Q ss_pred CCCCCCCCccccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccC-CCcEEEEEeC
Q 007855 239 GNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPK-YGHLILSAGM 317 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~-~g~~L~sgs~ 317 (587)
++...+......+...+.++...|..+|.|-..... ..++.++.+|.+.|++|+|+|. .+.+|+||+.
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-----------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~ 79 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-----------QILIADLRGHEGPVWQVAWAHPMYGNILASCSY 79 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-----------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEET
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-----------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC
Confidence 444455555666777888999999999999664321 1356789999999999999863 3789999999
Q ss_pred CCeEEEEecCCCC--eeeEEEcccCCceeeEEEecC--CCeEEEEeCCCeEEEEECCCCcEE---EEeec-CCcceEEEE
Q 007855 318 DTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCND--GTKFLTASYDKNIKYWDTETGQVI---RTFST-GKIPYVVKL 389 (587)
Q Consensus 318 Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~d--g~~l~s~s~Dg~I~vWd~~t~~~i---~~~~~-~~~~~~~~~ 389 (587)
|++|+|||+ ..+ ..+..+.+|...|.+++|+|+ +.+|++|+.|++|++||+..+... ..+.. .....++.|
T Consensus 80 D~~v~iWd~-~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~ 158 (316)
T 3bg1_A 80 DRKVIIWRE-ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSW 158 (316)
T ss_dssp TSCEEEECC-SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEE
T ss_pred CCEEEEEEC-CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEE
Confidence 999999999 444 466778899999999999997 889999999999999999876422 12221 223446667
Q ss_pred ccCCC--------------CCcEEEEEeCCCcEEEEeCCCC---cEEEEEccCCCCeeEEEEecCC----CEEEEEECCC
Q 007855 390 NPDDD--------------KQNILLAGMSDKKIVQWDMNTK---EITQEYDQHLGAVNTITFVDNN----RRFVTSSDDK 448 (587)
Q Consensus 390 ~~~~~--------------~~~~l~sg~~dg~I~iwD~~t~---~~~~~~~~h~~~I~~i~~sp~~----~~l~s~s~Dg 448 (587)
.|... ...+|++|+.|+.|++||++.. ..+..+.+|...|.+++|+|++ .+|++++.|+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~ 238 (316)
T 3bg1_A 159 APAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDG 238 (316)
T ss_dssp CCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTC
T ss_pred ccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCC
Confidence 66521 1357999999999999999765 4667788999999999999986 8899999999
Q ss_pred CEEEEECCCC---e-EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 449 SLRVWEFGIP---V-VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 449 ~I~iwd~~~~---~-~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
+|+||++... . ....+ ..|...|.+++|+|++.+|++++.|+.|++|+..
T Consensus 239 ~v~iw~~~~~~~~~~~~~~~-~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 239 RVFIWTCDDASSNTWSPKLL-HKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEEECSSTTCCCCBCCEE-EECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred eEEEEEccCccccchhhhhh-hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 9999998762 1 11112 2467889999999999999999999999999975
No 119
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=4.5e-28 Score=255.02 Aligned_cols=255 Identities=13% Similarity=0.115 Sum_probs=177.1
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-----EEEcccCCceeeEEEec--------CCCeEEEEeC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-----RTYMGHSKAVRDISFCN--------DGTKFLTASY 360 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-----~~~~~h~~~V~~l~fs~--------dg~~l~s~s~ 360 (587)
.|...+....+.++ +.+|++|+.|++|+|||+ ..+.+. ..+.+|.+.|++|+|+| ++++|++|+.
T Consensus 87 ~~~~~~~~~~~~~~-~~~las~~~d~~v~lw~~-~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~ 164 (393)
T 4gq1_A 87 LHDGDGNVNSSPVY-SLFLACVCQDNTVRLIIT-KNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD 164 (393)
T ss_dssp ----------CCEE-EEEEEEEETTSCEEEEEE-ETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred ccCCCcceeecCCC-CCEEEEEeCCCcEEEEEC-CCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence 44444444445555 789999999999999999 455432 34678999999999998 7899999999
Q ss_pred CCeEEEEECCCCcEEEE-eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE------------------
Q 007855 361 DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE------------------ 421 (587)
Q Consensus 361 Dg~I~vWd~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~------------------ 421 (587)
|++|+|||+.++.++.. +.....+.+++|+|.+ .++|++|+.|+.|++||+++++....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~--~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~ 242 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSN--PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTL 242 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTE--EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCCC--CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccc
Confidence 99999999988766554 4556667788888854 36899999999999999988754332
Q ss_pred -------EccCCCCeeEEEEe-cCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeE
Q 007855 422 -------YDQHLGAVNTITFV-DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493 (587)
Q Consensus 422 -------~~~h~~~I~~i~~s-p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I 493 (587)
..+|...|.++.|+ +++..|++++.|+++++||+........+. .+...+..+.+.|+...+.
T Consensus 243 ~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~-------- 313 (393)
T 4gq1_A 243 PLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGIS-------- 313 (393)
T ss_dssp GGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC--------------------CCSCSEEEEC--------
T ss_pred cceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEcccccccc--------
Confidence 23577889999998 799999999999999999998776655443 2444444444444322110
Q ss_pred EEEEcCCceeecccceecccccccceEEEEEcC--CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCC
Q 007855 494 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQ 571 (587)
Q Consensus 494 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~ 571 (587)
. ........|+| ++.++++|+.||.|+|||+.+++++..+..|..+|.+++|+| ++
T Consensus 314 ------------------~---~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafsp-dG 371 (393)
T 4gq1_A 314 ------------------L---FPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQ-DG 371 (393)
T ss_dssp ------------------S---SCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECT-TS
T ss_pred ------------------c---cCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcC-CC
Confidence 0 01111233444 556788899999999999999999888889999999999999 78
Q ss_pred CEEEEEECCCcE
Q 007855 572 SKVATCGWDGLI 583 (587)
Q Consensus 572 ~~l~s~g~DG~I 583 (587)
++||+++.+|.+
T Consensus 372 ~~LA~as~~Gv~ 383 (393)
T 4gq1_A 372 SHLAIATEGSVL 383 (393)
T ss_dssp SEEEEEESSEEE
T ss_pred CEEEEEeCCCeE
Confidence 899999988763
No 120
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=8.7e-28 Score=257.48 Aligned_cols=245 Identities=9% Similarity=0.087 Sum_probs=201.7
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC-----ceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK-----AVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~-----~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
+|...|.+++|+|+ |.+||+++.||.|+||+. .. ++..+. |.. .|.+++|||+|++|++|+.||+|+|||
T Consensus 83 ~~~~~V~~vawSPd-G~~LAs~s~dg~V~iwd~-~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 83 QPVCYPRVCKPSPI-DDWMAVLSNNGNVSVFKD-NK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp SCSCCEEEEEECSS-SSCEEEEETTSCEEEEET-TE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred CCCCcEEEEEECCC-CCEEEEEeCCCcEEEEeC-Cc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 56889999999999 999999999999999996 22 667777 665 599999999999999999999999999
Q ss_pred CCCCc-------EEEEeecC-----CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE---EEEE-ccCCCCeeEE
Q 007855 369 TETGQ-------VIRTFSTG-----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI---TQEY-DQHLGAVNTI 432 (587)
Q Consensus 369 ~~t~~-------~i~~~~~~-----~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~---~~~~-~~h~~~I~~i 432 (587)
+.++. .+..+..+ ..+..++|+|++ +++++.|+.|++||+..+.. .+.+ .+|...|.++
T Consensus 158 ~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-----Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sv 232 (588)
T 2j04_A 158 IRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-----LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDL 232 (588)
T ss_dssp CCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-----EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCE
T ss_pred CCCCccccccceeeeeeecccccccccEEEEEEcCCc-----EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEE
Confidence 99885 35666422 245667777642 88999999999999988773 3566 4788999999
Q ss_pred EEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEE--eCCCCEEEEEECCCeEEEEEcCCceeeccccee
Q 007855 433 TFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISL--HPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF 510 (587)
Q Consensus 433 ~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~--sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~ 510 (587)
+|+ +..|++++ +++|++||+.......... .|...+..++| +|++..|++++.+|. ++|...
T Consensus 233 aFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------- 296 (588)
T 2j04_A 233 KIV--DYKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------- 296 (588)
T ss_dssp EEE--TTEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-----------
T ss_pred EEE--CCEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-----------
Confidence 999 68888887 6999999999887744433 59999999999 999999999999999 999876
Q ss_pred cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 511 ~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
.++++|++..+++. |+++++|+..... +..+.+ ...|.+++|+| ++..+|+++.
T Consensus 297 ----------~~~~spd~~l~a~~--d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~~~~ 350 (588)
T 2j04_A 297 ----------ELHVTADNIIAPYL--EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAIVYD 350 (588)
T ss_dssp ----------SEEEECCCSSHHHH--HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEEEEE
T ss_pred ----------cEEECCCceEEEEc--CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEEEEe
Confidence 15699999887775 8999999975544 334443 55799999999 7778888774
No 121
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.2e-26 Score=246.23 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=201.5
Q ss_pred EEcCCCCCeEEEEEccCCCcEE-EEEeCCCeEEEEecCC--CCeeeEEEc--ccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLI-LSAGMDTKVKIWDVFN--SGKCMRTYM--GHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L-~sgs~Dg~I~iWd~~~--~~~~~~~~~--~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
...+|.+.|++++|+|+ +.+| ++|+.||.|+||++ . .+.++..+. .|...|.+++|+|++++|++++.+|.|+
T Consensus 97 ~~~~~~~~v~~~~~s~d-~~~l~~~~~~dg~v~iwd~-~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~ 174 (450)
T 2vdu_B 97 GAPPIYSYIRNLRLTSD-ESRLIACADSDKSLLVFDV-DKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVY 174 (450)
T ss_dssp ---CCCCCEEEEEECTT-SSEEEEEEGGGTEEEEEEE-CSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred CCCccCCceEEEEEcCC-CCEEEEEECCCCeEEEEEC-cCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEE
Confidence 34678999999999999 7775 89999999999999 5 677777776 5778999999999999999999999999
Q ss_pred EEECCCCcEEE----Eee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCC
Q 007855 366 YWDTETGQVIR----TFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNR 439 (587)
Q Consensus 366 vWd~~t~~~i~----~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~ 439 (587)
+|++.++.... .+. ....+.++.|+|+...+.+|++|+.|+.|++||++++..+.. +.+|...|++++|+ +++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~ 253 (450)
T 2vdu_B 175 SIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDY 253 (450)
T ss_dssp EEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STT
T ss_pred EEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCC
Confidence 99998876543 333 334567888888622346899999999999999999988877 55899999999999 999
Q ss_pred EEEEEECCCCEEEEECCCCeEEEEeec------------------------CCCcceeEEEEeCCCCEEEEEE-CCCeEE
Q 007855 440 RFVTSSDDKSLRVWEFGIPVVIKYISE------------------------PHMHSMPSISLHPNTNWLAAQS-LDNQIL 494 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~------------------------~~~~~i~~i~~sp~g~~l~~~s-~dg~I~ 494 (587)
+|++++.|+.|++||+.++..+..+.. .....+.+++|+|++++|++++ .++.|+
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~ 333 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCII 333 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEE
Confidence 999999999999999999988777642 2235688999999999999999 899999
Q ss_pred EEEc--CCceeecccceecccccccceEEEEEcCCCCEEEEEcC------CCcEEEEeCC
Q 007855 495 IYST--RERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG------EGKCWFWDWK 546 (587)
Q Consensus 495 iwd~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~------dG~I~vwd~~ 546 (587)
+|++ .....+.....+.++ ..+.+++|+|++.++++++. +..|.+|.+.
T Consensus 334 iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~ 390 (450)
T 2vdu_B 334 ILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYN 390 (450)
T ss_dssp EEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEE
T ss_pred EEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEE
Confidence 9999 544333444445554 66889999996544444443 4457888764
No 122
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.5e-27 Score=245.86 Aligned_cols=227 Identities=12% Similarity=0.097 Sum_probs=181.3
Q ss_pred EecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---------CCcE
Q 007855 348 FCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---------TKEI 418 (587)
Q Consensus 348 fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---------t~~~ 418 (587)
+.+++.+|++|+.||.|++||+.+++.+..+.. ..+..+.++|. +++++.|+.|++|+.. +++.
T Consensus 44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~------~~s~s~D~~i~~w~~~~~~~~~~~~~~~~ 116 (343)
T 3lrv_A 44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTITT-PNPRTGGEHPA------IISRGPCNRLLLLYPGNQITILDSKTNKV 116 (343)
T ss_dssp SSEEEEEEEEEEETTEEEEEEESSSSCEEEEEE-ECCCTTCCCCS------EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred hcCCCCEEEEECCCCcEEEEECCCCcEEEEEec-CCceeeeeCCc------eEEecCCCeEEEEEccCceEEeecCCcce
Confidence 445788999999999999999999998887762 22223333332 8999999999999665 5554
Q ss_pred EEEEc-cCCCCeeEEEEec--CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEE
Q 007855 419 TQEYD-QHLGAVNTITFVD--NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI 495 (587)
Q Consensus 419 ~~~~~-~h~~~I~~i~~sp--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~i 495 (587)
+..+. .|...|.+++|+| ++++|++++.||+|++||++++.........+...+.+++|+|++.+|++|+.||.|++
T Consensus 117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i 196 (343)
T 3lrv_A 117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV 196 (343)
T ss_dssp EEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence 55544 6778999999999 99999999999999999999998876665566778999999999999999999999999
Q ss_pred EEcCCceeecccceecc-cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCCEE--EEEEcCC
Q 007855 496 YSTRERFQLNKKKRFAG-HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCI--GCEWHPL 569 (587)
Q Consensus 496 wd~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~---h~~~V~--~v~~sp~ 569 (587)
||++++..+. ..+.. | ...|.+++|+|+|.+|++++ ++.|++||+++++.+..+.. |...+. +++|+|
T Consensus 197 wd~~~~~~~~--~~~~~~h--~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 270 (343)
T 3lrv_A 197 YNLSSPDQAS--SRFPVDE--EAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDD- 270 (343)
T ss_dssp EESSCTTSCC--EECCCCT--TSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECT-
T ss_pred EECCCCCCCc--cEEeccC--CCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECC-
Confidence 9998875431 23344 4 57899999999999999999 55999999999877655543 334443 699999
Q ss_pred CCCEEEEEEC-CCcEEEcC
Q 007855 570 EQSKVATCGW-DGLIKYWD 587 (587)
Q Consensus 570 ~~~~l~s~g~-DG~I~iWD 587 (587)
++.+|++++. |+.|+||+
T Consensus 271 ~g~~l~~~s~~d~~i~v~~ 289 (343)
T 3lrv_A 271 SGKNMIAYSNESNSLTIYK 289 (343)
T ss_dssp TSSEEEEEETTTTEEEEEE
T ss_pred CCCEEEEecCCCCcEEEEE
Confidence 7889999998 99999995
No 123
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.95 E-value=5e-25 Score=233.44 Aligned_cols=271 Identities=14% Similarity=0.126 Sum_probs=220.3
Q ss_pred cccceEeecccccccceeeeeCCCCcccCCCcccCCCceEE-----EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEE
Q 007855 250 EDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVH-----TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIW 324 (587)
Q Consensus 250 ~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~-----tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iW 324 (587)
.+...+......+..++.|-.... +++. .+.+|...|.+++|+|+ +.++++++.|+.|++|
T Consensus 131 s~~~~~~~~~~~~~~i~~~d~~~g-------------~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~s~~~d~~v~~~ 196 (433)
T 3bws_A 131 IDNTRLAIPLLEDEGMDVLDINSG-------------QTVRLSPPEKYKKKLGFVETISIPEH-NELWVSQMQANAVHVF 196 (433)
T ss_dssp SSSSEEEEEBTTSSSEEEEETTTC-------------CEEEECCCHHHHTTCCEEEEEEEGGG-TEEEEEEGGGTEEEEE
T ss_pred eCCCeEEEEeCCCCeEEEEECCCC-------------eEeeecCcccccccCCceeEEEEcCC-CEEEEEECCCCEEEEE
Confidence 335556666666777777754332 2222 45689999999999998 8999999999999999
Q ss_pred ecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEe
Q 007855 325 DVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM 403 (587)
Q Consensus 325 d~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~ 403 (587)
|+ .+++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++.+..+..+..+..+++.+++ ..+++++
T Consensus 197 d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g---~~l~~~~ 272 (433)
T 3bws_A 197 DL-KTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG---KELYIAQ 272 (433)
T ss_dssp ET-TTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS---SEEEEEE
T ss_pred EC-CCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC---CEEEEEE
Confidence 99 78888888989999999999999999886554 7999999999999999998887777788888754 3566666
Q ss_pred --------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEE-EEEECCCCEEEEECCCCeEEEEeecCCCcceeE
Q 007855 404 --------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPS 474 (587)
Q Consensus 404 --------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~ 474 (587)
.|+.|++||+.+++.+..+ .|...+.+++|+|+++.+ ++++.++.|++||+.+...+..+. +...+.+
T Consensus 273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~ 349 (433)
T 3bws_A 273 FSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNT 349 (433)
T ss_dssp EESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEE
T ss_pred CCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCe
Confidence 5889999999999877766 456689999999999755 566889999999999988887764 5677899
Q ss_pred EEEeCCCCEEEEEEC---------------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC-CC
Q 007855 475 ISLHPNTNWLAAQSL---------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG 538 (587)
Q Consensus 475 i~~sp~g~~l~~~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-dG 538 (587)
++|+|++++|++++. ||.|++||+.++..+... .. ...+.+++|+|+|++|++++. ++
T Consensus 350 ~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~---~~---~~~~~~~~~s~dg~~l~~~~~~d~ 423 (433)
T 3bws_A 350 IALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFW---EA---GNQPTGLDVSPDNRYLVISDFLDH 423 (433)
T ss_dssp EEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEE---EC---SSSEEEEEECTTSCEEEEEETTTT
T ss_pred EEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEe---cC---CCCCceEEEcCCCCEEEEEECCCC
Confidence 999999999998887 579999999887655332 22 245778999999999988764 99
Q ss_pred cEEEEeCCC
Q 007855 539 KCWFWDWKS 547 (587)
Q Consensus 539 ~I~vwd~~t 547 (587)
.|++|++..
T Consensus 424 ~i~v~~~~~ 432 (433)
T 3bws_A 424 QIRVYRRDG 432 (433)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEecC
Confidence 999999864
No 124
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=6.3e-24 Score=232.75 Aligned_cols=315 Identities=13% Similarity=0.120 Sum_probs=234.6
Q ss_pred ccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEc-CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC
Q 007855 249 VEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWS-GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF 327 (587)
Q Consensus 249 ~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~-gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~ 327 (587)
......+......|..++.|-. -..+++.++. +|. +.+++|+|+ +++|++++.|++|++||+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~-------------~t~~~~~~i~~g~~--~~~v~~spd-g~~l~v~~~d~~V~v~D~~ 208 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDG-------------DSKKIVKVIDTGYA--VHISRMSAS-GRYLLVIGRDARIDMIDLW 208 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEET-------------TTCCEEEEEECSTT--EEEEEECTT-SCEEEEEETTSEEEEEETT
T ss_pred cCCCCEEEEEEcCCCeEEEEEC-------------CCceEEEEEecCcc--cceEEECCC-CCEEEEECCCCeEEEEECc
Confidence 3445556666666766666632 2346678887 454 999999999 9999999999999999993
Q ss_pred -CCCeeeEEEcccCCceeeEEEec----CCCeEEEEeC-CCeEEEEECCCCcEEEEeecCC------------cceEEEE
Q 007855 328 -NSGKCMRTYMGHSKAVRDISFCN----DGTKFLTASY-DKNIKYWDTETGQVIRTFSTGK------------IPYVVKL 389 (587)
Q Consensus 328 -~~~~~~~~~~~h~~~V~~l~fs~----dg~~l~s~s~-Dg~I~vWd~~t~~~i~~~~~~~------------~~~~~~~ 389 (587)
.+++++.++. +...+..++|+| +|++|++++. +++|.|||..+++++..+.... .+..+.+
T Consensus 209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~ 287 (543)
T 1nir_A 209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 287 (543)
T ss_dssp SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEE
T ss_pred CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEE
Confidence 3577777777 455689999999 9999999885 8999999999999999887531 2344555
Q ss_pred ccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE--EEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCeEEEEeec
Q 007855 390 NPDDDKQNILLAGMSDKKIVQWDMNTKEITQ--EYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 390 ~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~--~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~ 466 (587)
+++ ...++++...++.|.+||+.+.+.+. .+ .+...+.++.|+|++++|++++ .+++|.+||+.+++++..+..
T Consensus 288 s~~--~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~ 364 (543)
T 1nir_A 288 SHE--HPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDV 364 (543)
T ss_dssp CSS--SSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred CCC--CCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeecc
Confidence 554 44678888889999999998865443 34 3567788999999999877665 588999999999998877753
Q ss_pred ---CCCcceeEEEEeCC-CCEEEEEE-CCCeEEEEEcCCcee----ecccceecccccccceEEEEEcCCCCEEEEEc--
Q 007855 467 ---PHMHSMPSISLHPN-TNWLAAQS-LDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-- 535 (587)
Q Consensus 467 ---~~~~~i~~i~~sp~-g~~l~~~s-~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-- 535 (587)
+|......+ ++|+ +.+++++. .+++|.+|++.+... ......+.++ ...+..+.|+|+|++|++++
T Consensus 365 g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~--g~~~~~v~~~pdg~~l~v~~~~ 441 (543)
T 1nir_A 365 GKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ--GGGSLFIKTHPKSSHLYVDTTF 441 (543)
T ss_dssp SSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCCEEEECCTT
T ss_pred CCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcC--CCCceEEEcCCCCCcEEEecCC
Confidence 243333333 4777 55566665 579999999977211 2233445544 23455699999999999987
Q ss_pred -----CCCcEEEEeCCCCeeE-EEE--------ecCCCCEEEEEEcCCCCCEEEEEE-----CCCcEEEcC
Q 007855 536 -----GEGKCWFWDWKSCKVF-RTL--------KCHEGVCIGCEWHPLEQSKVATCG-----WDGLIKYWD 587 (587)
Q Consensus 536 -----~dG~I~vwd~~t~~~~-~~l--------~~h~~~V~~v~~sp~~~~~l~s~g-----~DG~I~iWD 587 (587)
.++.|.|||+.+++.. ..+ ..+...+..+.|+|+ +..|+.+. .|+.|.|||
T Consensus 442 ~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-g~~~~~s~~~~~~~~~~i~v~D 511 (543)
T 1nir_A 442 NPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKR-GDEVWFSVWNGKNDSSALVVVD 511 (543)
T ss_dssp CSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSS-SSEEEEEEECCTTSCCEEEEEE
T ss_pred CCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCC-CCEEEEEeecCCCCCCeEEEEE
Confidence 2679999999998876 554 346778999999994 55555442 379999997
No 125
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.94 E-value=1.6e-24 Score=230.63 Aligned_cols=257 Identities=19% Similarity=0.328 Sum_probs=203.2
Q ss_pred CCCCCCCCcccccc-ceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeC
Q 007855 239 GNAGGEKGEHVEDK-STFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGM 317 (587)
Q Consensus 239 ~~~~~~~~~~~~~~-~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~ 317 (587)
.+.+.+......+. ..+.+....|..++.|-.......... ....+.+.++.+|...|++|+|+|++..+|++|+.
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 202 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---SGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD 202 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---TCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---cccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence 34444555555554 567777888888999977543221110 01145677889999999999999994449999999
Q ss_pred CCeEEEEecCCCCe------eeEEEcccCCceeeEEEec-CCCeEEEEeCCCeEEEEECCCC---cEEEEee-cCCcceE
Q 007855 318 DTKVKIWDVFNSGK------CMRTYMGHSKAVRDISFCN-DGTKFLTASYDKNIKYWDTETG---QVIRTFS-TGKIPYV 386 (587)
Q Consensus 318 Dg~I~iWd~~~~~~------~~~~~~~h~~~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~---~~i~~~~-~~~~~~~ 386 (587)
||.|+||++..... ....+.+|...|.+++|+| ++.+|++++.||.|++||++++ +.+..+. ....+.+
T Consensus 203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~ 282 (430)
T 2xyi_A 203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC 282 (430)
T ss_dssp TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence 99999999943111 2567789999999999999 7789999999999999999987 4555554 3455667
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEEccCCCCeeEEEEecCCC-EEEEEECCCCEEEEECCC-------
Q 007855 387 VKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGI------- 457 (587)
Q Consensus 387 ~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~~~I~~i~~sp~~~-~l~s~s~Dg~I~iwd~~~------- 457 (587)
++|++.+ ..+|++|+.||.|++||+++ ...+..+..|...|++++|+|+++ +|++++.|+.|+|||+..
T Consensus 283 i~~~p~~--~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~ 360 (430)
T 2xyi_A 283 LSFNPYS--EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360 (430)
T ss_dssp EEECSSC--TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred EEeCCCC--CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence 8887754 36899999999999999998 567888889999999999999985 699999999999999987
Q ss_pred -------CeEEEEeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCc
Q 007855 458 -------PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 458 -------~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~ 501 (587)
...+... ..|...|.+++|+|++. +|++++.||.|+||++...
T Consensus 361 ~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 361 EDAEDGPPELLFIH-GGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp HHHHHCCTTEEEEC-CCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred cccccCCcceEEEc-CCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 2344333 45888999999999998 8999999999999998754
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=2.6e-24 Score=228.12 Aligned_cols=265 Identities=11% Similarity=0.104 Sum_probs=209.1
Q ss_pred EEEcCCCCCeEEEEEccCC-------------CcEEEEEeCC------CeEEEEecCCCCeeeEEEcccCCceeeEEEec
Q 007855 290 HTWSGHTKGVSAIRFFPKY-------------GHLILSAGMD------TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN 350 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~-------------g~~L~sgs~D------g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~ 350 (587)
.++.+|...+..+++++.+ +..|+.++.+ +.|++||+ . +...+.+.+|...|.+++|+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~-~-g~~~~~l~~~~~~v~~~~~Sp 188 (415)
T 2hqs_A 111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDY-D-GYNQFVVHRSPQPLMSPAWSP 188 (415)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEET-T-SCSCEEEEEESSCEEEEEECT
T ss_pred eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcC-C-CCCCEEEeCCCCcceeeEEcC
Confidence 5688999999988887510 3455555443 79999999 3 556778888999999999999
Q ss_pred CCCeEEEEeCCC---eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc--EEEEeCCCCcEEEEEccC
Q 007855 351 DGTKFLTASYDK---NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK--IVQWDMNTKEITQEYDQH 425 (587)
Q Consensus 351 dg~~l~s~s~Dg---~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~--I~iwD~~t~~~~~~~~~h 425 (587)
+|++|++++.++ .|++||+.+++.............++|+|++. .++++++.++. |++||+.+++. ..+..|
T Consensus 189 dg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg~--~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~ 265 (415)
T 2hqs_A 189 DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGS--KLAFALSKTGSLNLYVMDLASGQI-RQVTDG 265 (415)
T ss_dssp TSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTCCE-EECCCC
T ss_pred CCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCCC--EEEEEEecCCCceEEEEECCCCCE-EeCcCC
Confidence 999999999885 99999999998876555555667788888653 34547766655 99999998876 567778
Q ss_pred CCCeeEEEEecCCCEEEEEECC-C--CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC---CeEEEEEcC
Q 007855 426 LGAVNTITFVDNNRRFVTSSDD-K--SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD---NQILIYSTR 499 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d---g~I~iwd~~ 499 (587)
...+.+++|+|++++|++++.+ + .|.+||+.++.... +. .+...+.+++|+|+|++|++++.+ ..|.+||+.
T Consensus 266 ~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~ 343 (415)
T 2hqs_A 266 RSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-IT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 343 (415)
T ss_dssp SSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETT
T ss_pred CCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-Ee-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECC
Confidence 8999999999999999988864 4 67778988776433 22 356678899999999999988865 589999998
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcCCC---cEEEEeCCCCeeEEEEecCCCCEEEEEEcCC
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG---KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG---~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~ 569 (587)
++... .+..+ ..+.+++|+|+|++|++++.++ .|++||+. +.....+..|.+.|.+++|+|.
T Consensus 344 ~~~~~----~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~ 408 (415)
T 2hqs_A 344 TGGVQ----VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPY 408 (415)
T ss_dssp TCCEE----ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCC
T ss_pred CCCEE----EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCccccc
Confidence 76542 22233 2577899999999999888776 79999986 5667788899999999999993
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.93 E-value=2.4e-25 Score=234.12 Aligned_cols=238 Identities=13% Similarity=0.090 Sum_probs=168.2
Q ss_pred cccccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEcc--------CCCcEEEEEeCCC
Q 007855 248 HVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFP--------KYGHLILSAGMDT 319 (587)
Q Consensus 248 ~~~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp--------~~g~~L~sgs~Dg 319 (587)
.......+.++...|.++|.|....... ....++.++.||.+.|++|+|+| + +++||||+.|+
T Consensus 96 ~~~~~~~~las~~~d~~v~lw~~~~~~~--------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d-~~~las~s~D~ 166 (393)
T 4gq1_A 96 SSPVYSLFLACVCQDNTVRLIITKNETI--------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLA-EQVIASVGDDC 166 (393)
T ss_dssp -CCEEEEEEEEEETTSCEEEEEEETTEE--------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEE-EEEEEEEETTS
T ss_pred ecCCCCCEEEEEeCCCcEEEEECCCCcc--------ceeeeecccCCCCCceEEEEEccccccccCCC-CCEEEEEECCC
Confidence 4566677889999999999997654321 12234556889999999999998 5 88999999999
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCC-CeEEEEeCCCeEEEEECCCCcEEEEeec------------------
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFST------------------ 380 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~------------------ 380 (587)
+|+|||+ ..+.++..+.+|...|.+++|+|++ .+|++++.|++|++||+.+++.......
T Consensus 167 tv~~Wd~-~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~ 245 (393)
T 4gq1_A 167 TLIIWRL-TDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLV 245 (393)
T ss_dssp EEEEEEE-ETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC
T ss_pred eEEEEEC-CCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccce
Confidence 9999999 6677777788899999999999987 4899999999999999998876543321
Q ss_pred --------CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEe-----------------
Q 007855 381 --------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV----------------- 435 (587)
Q Consensus 381 --------~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s----------------- 435 (587)
......+.+.. ..+..|++++.|+.+++||+.++.....+..|...+..+.+.
T Consensus 246 ~~~~~~~~~~~v~~v~~~~--~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (393)
T 4gq1_A 246 NTCHSSGIASSLANVRWIG--SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP 323 (393)
T ss_dssp ------CCSSSCSEEEEET--TTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred eeeecccccccceeeeeec--CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence 11223444442 234689999999999999999887766665555544443333
Q ss_pred -c--CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 436 -D--NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 436 -p--~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
| ++.++++|+.||.|+|||+..+....... .+..+|.+++|+|+|++||+++.+| +.+|.+.
T Consensus 324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ccCCCCEEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 2 33356778889999999999887766554 4777999999999999999998665 6666654
No 128
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.93 E-value=1.2e-23 Score=212.59 Aligned_cols=179 Identities=11% Similarity=0.106 Sum_probs=143.2
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEec---CCCeEEEEeCCCeEEEEECCCCcEEEEeecCC----cceEEEE
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCN---DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK----IPYVVKL 389 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~---dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~----~~~~~~~ 389 (587)
.|+.|++|++...++.+..+.+|...++.++|++ ++.+|++++.|++|+|||+.+|++++++..++ ...+++|
T Consensus 155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf 234 (356)
T 2w18_A 155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY 234 (356)
T ss_dssp TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence 3899999999777888888899999999999999 77999999999999999999999999997543 2345577
Q ss_pred ccCCCC---------CcEEEEEeCCCcEEEEeCCCCcEEEEE-----ccCCCCeeEEEEecCCCEEEEEECCCCEEEEEC
Q 007855 390 NPDDDK---------QNILLAGMSDKKIVQWDMNTKEITQEY-----DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 390 ~~~~~~---------~~~l~sg~~dg~I~iwD~~t~~~~~~~-----~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~ 455 (587)
+|++.. ...+++|+.|++|++||..+++.+..+ .+|...+.+..++ +..+++++.|++|+|||+
T Consensus 235 SpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl 312 (356)
T 2w18_A 235 SEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDL 312 (356)
T ss_dssp EETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred CCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEEC
Confidence 775420 012467889999999999999887765 4676665555554 889999999999999999
Q ss_pred CCCeEEEEeecCCCcc-eeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 456 GIPVVIKYISEPHMHS-MPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~~-i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
.+++++..+.. |... +.+++|+|+|++|++|+.|++|+|||+
T Consensus 313 ~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 313 LLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 99999988753 5544 456899999999999999999999985
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.3e-23 Score=230.36 Aligned_cols=274 Identities=14% Similarity=0.108 Sum_probs=217.2
Q ss_pred EccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC--CCCcEEEEeecC
Q 007855 304 FFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT--ETGQVIRTFSTG 381 (587)
Q Consensus 304 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~--~t~~~i~~~~~~ 381 (587)
|+|+ +.++++++.|++|.+||. .+++++.++..+.. +.+++|+|+|++|++++.|++|.+||+ .+++++..+..+
T Consensus 145 ~~p~-~~~~vs~~~d~~V~v~D~-~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g 221 (543)
T 1nir_A 145 LDLP-NLFSVTLRDAGQIALVDG-DSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG 221 (543)
T ss_dssp CCGG-GEEEEEEGGGTEEEEEET-TTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred cCCC-CEEEEEEcCCCeEEEEEC-CCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC
Confidence 6787 789999999999999999 78899988874333 899999999999999999999999999 899999999988
Q ss_pred CcceEEEEcc----CCCCCcEEEEEe-CCCcEEEEeCCCCcEEEEEccC----------C-CCeeEEEEecCCCE-EEEE
Q 007855 382 KIPYVVKLNP----DDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQH----------L-GAVNTITFVDNNRR-FVTS 444 (587)
Q Consensus 382 ~~~~~~~~~~----~~~~~~~l~sg~-~dg~I~iwD~~t~~~~~~~~~h----------~-~~I~~i~~sp~~~~-l~s~ 444 (587)
..+..+.++| ++ .++++++ .++.|.+||..+++++..+..+ . ..+.++.+++++.. +++.
T Consensus 222 ~~p~~va~sp~~~~dg---~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~ 298 (543)
T 1nir_A 222 IEARSVESSKFKGYED---RYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNV 298 (543)
T ss_dssp SEEEEEEECCSTTCTT---TEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CCcceEEeCCCcCCCC---CEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEE
Confidence 8888889887 54 3565555 6899999999999998887642 2 37899999997665 5566
Q ss_pred ECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceec-ccccccceEEE
Q 007855 445 SDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFA-GHIVAGYACQV 522 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~-~~~~~~~i~~l 522 (587)
..++.|.+||+.....+......+...+..+.|+|+|++|++++ .++.|.+||+.++..+....... .| .+....+
T Consensus 299 ~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph--~g~g~~~ 376 (543)
T 1nir_A 299 KETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPH--PGRGANF 376 (543)
T ss_dssp TTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBC--CTTCEEE
T ss_pred CCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCC--CCCCccc
Confidence 67899999999875433311113455678899999999877665 58999999999887654433211 12 2222223
Q ss_pred EEcCC-CCEEEEEc-CCCcEEEEeCCC-------CeeEEEEecCCCCEEEEEEcCCCCCEEEEEE-------CCCcEEEc
Q 007855 523 NFSPD-GRFVMSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-------WDGLIKYW 586 (587)
Q Consensus 523 ~~spd-g~~L~sgs-~dG~I~vwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-------~DG~I~iW 586 (587)
++|+ |.+++++. .+++|.+||+.+ ++++.++.+|.+.+..++++| ++.+|++++ .+++|.||
T Consensus 377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~ 454 (543)
T 1nir_A 377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVF 454 (543)
T ss_dssp -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEE
T ss_pred -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEE
Confidence 4677 66667765 689999999998 899999999998889999999 777888887 37799999
Q ss_pred C
Q 007855 587 D 587 (587)
Q Consensus 587 D 587 (587)
|
T Consensus 455 d 455 (543)
T 1nir_A 455 D 455 (543)
T ss_dssp E
T ss_pred E
Confidence 7
No 130
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.92 E-value=1.3e-23 Score=222.79 Aligned_cols=275 Identities=12% Similarity=0.076 Sum_probs=209.8
Q ss_pred CCeEEEEEccCCCcEEEEEe----CCC----eEEEEec--CCCCeee--EEEcccCCceeeEEEec--------------
Q 007855 297 KGVSAIRFFPKYGHLILSAG----MDT----KVKIWDV--FNSGKCM--RTYMGHSKAVRDISFCN-------------- 350 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs----~Dg----~I~iWd~--~~~~~~~--~~~~~h~~~V~~l~fs~-------------- 350 (587)
..|....|.+.+..++++|+ .+| +|+|||+ . +++++ ..+.+|...++.+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~ 141 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGA-PGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGA 141 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSS-TTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCC-CCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCc
Confidence 45777889888677888886 467 9999998 5 34455 56889999998888875
Q ss_pred CCCeEEEEeCC------CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC---cEEEEeCCCCcEEEE
Q 007855 351 DGTKFLTASYD------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQE 421 (587)
Q Consensus 351 dg~~l~s~s~D------g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---~I~iwD~~t~~~~~~ 421 (587)
.+..++.++.+ +.|++||+..+..............++|+|++ ..|++++.++ .|++||+.+++.. .
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg---~~la~~s~~~~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG---SKLAYVTFESGRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS---SEEEEEECTTSSCEEEEEETTTCCEE-E
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC---CEEEEEEecCCCcEEEEEECCCCcEE-E
Confidence 16677766654 79999999865544444455567788888865 4677777765 9999999998875 4
Q ss_pred EccCCCCeeEEEEecCCCEEE-EEECCCC--EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-C--eEEE
Q 007855 422 YDQHLGAVNTITFVDNNRRFV-TSSDDKS--LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-N--QILI 495 (587)
Q Consensus 422 ~~~h~~~I~~i~~sp~~~~l~-s~s~Dg~--I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-g--~I~i 495 (587)
+..|...+.+++|+|+++.|+ +++.++. |++||+.++... .+. .+...+.+++|+|+|++|++++.+ + .|.+
T Consensus 218 l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~-~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 218 VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVT-DGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECC-CCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred eecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCc-CCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence 667888999999999999888 5666655 999999887763 332 466789999999999999988864 4 6888
Q ss_pred EEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC---CcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCC
Q 007855 496 YSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS 572 (587)
Q Consensus 496 wd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d---G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~ 572 (587)
||+.++... .+..+ ...+..++|+|+|++|++++.+ +.|++||+.+++.. .+..|. .+.+++|+| ++.
T Consensus 296 ~d~~~~~~~----~l~~~--~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~ 366 (415)
T 2hqs_A 296 VNINGGAPQ----RITWE--GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGT 366 (415)
T ss_dssp EETTSSCCE----ECCCS--SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSS
T ss_pred EECCCCCEE----EEecC--CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCC
Confidence 888765422 12222 3467789999999999988764 58999999998774 455554 789999999 677
Q ss_pred EEEEEECCC---cEEEcC
Q 007855 573 KVATCGWDG---LIKYWD 587 (587)
Q Consensus 573 ~l~s~g~DG---~I~iWD 587 (587)
+|++++.++ .|++||
T Consensus 367 ~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 367 MVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp EEEEEEEETTEEEEEEEE
T ss_pred EEEEEEcCCCccEEEEEE
Confidence 888887776 688885
No 131
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.2e-22 Score=205.16 Aligned_cols=272 Identities=7% Similarity=0.132 Sum_probs=195.3
Q ss_pred cEEEEEeCCCeEEEEecCCCC--eeeEEEcccCCceeeEEEecCCCeEEEEeCC-CeEEEEECC--CCc--EEEEeecCC
Q 007855 310 HLILSAGMDTKVKIWDVFNSG--KCMRTYMGHSKAVRDISFCNDGTKFLTASYD-KNIKYWDTE--TGQ--VIRTFSTGK 382 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D-g~I~vWd~~--t~~--~i~~~~~~~ 382 (587)
.++++++.|+.|++|++...+ ..+.. ..|...+.+++|+|+|++|++++.+ +.|.+|++. +++ .+..+....
T Consensus 6 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 84 (343)
T 1ri6_A 6 TVYIASPESQQIHVWNLNHEGALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG 84 (343)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS
T ss_pred EEEEeCCCCCeEEEEEECCCCcEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC
Confidence 355555889999999994334 33333 3577889999999999999998887 999999998 555 445565555
Q ss_pred cceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---CCcEEEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCC-
Q 007855 383 IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TKEITQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI- 457 (587)
Q Consensus 383 ~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~- 457 (587)
.+..+++++++. .+++++..++.|.+||+. +...+..+..+ ..+.+++|+|+++++++++ .++.|.+||+..
T Consensus 85 ~~~~~~~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 161 (343)
T 1ri6_A 85 SLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDD 161 (343)
T ss_dssp CCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred CCcEEEEcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCC
Confidence 777888888653 344555558899999994 44455555433 4689999999999888887 899999999987
Q ss_pred CeEEE----EeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCC--cee--ecccceec-ccccccceEEEEEcCC
Q 007855 458 PVVIK----YISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRE--RFQ--LNKKKRFA-GHIVAGYACQVNFSPD 527 (587)
Q Consensus 458 ~~~~~----~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~--~~~--~~~~~~~~-~~~~~~~i~~l~~spd 527 (587)
+.... .+.......+..++|+|++++|++++ .++.|.+|++.. +.. ......+. ++.....+..++|+|+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 241 (343)
T 1ri6_A 162 GHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPD 241 (343)
T ss_dssp SCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTT
T ss_pred CceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCC
Confidence 54322 22333445788899999999776665 789999999853 211 11111111 1111235667999999
Q ss_pred CCEEE-EEcCCCcEEEEeCC----CCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE-CCCcEEEcC
Q 007855 528 GRFVM-SGDGEGKCWFWDWK----SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 587 (587)
Q Consensus 528 g~~L~-sgs~dG~I~vwd~~----t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 587 (587)
|++|+ ++..++.|.+||+. +.+.+..+..+.. +.+++|+| ++.+|++++ .++.|.+|+
T Consensus 242 g~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~-dg~~l~~~~~~~~~v~v~~ 305 (343)
T 1ri6_A 242 GRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDH-SGKYLIAAGQKSHHISVYE 305 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECT-TSSEEEEECTTTCEEEEEE
T ss_pred CCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECC-CCCEEEEecCCCCeEEEEE
Confidence 99887 45578999999998 3455666665555 88999999 666677766 689999993
No 132
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=2e-22 Score=205.37 Aligned_cols=274 Identities=11% Similarity=0.117 Sum_probs=200.5
Q ss_pred EEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC-CCeEEEEECCCCcE-EEEeec
Q 007855 303 RFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQV-IRTFST 380 (587)
Q Consensus 303 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-Dg~I~vWd~~t~~~-i~~~~~ 380 (587)
.|.++.+.++++++.++.|.+||+ .+++.+..+..+...+ +++|+|+|++|++++. ++.|.+||+.+++. ...+..
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~ 81 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFST-DTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE 81 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEET-TTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeC-cccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence 456665667889999999999999 6788887777777777 9999999997777666 89999999999987 777777
Q ss_pred CCcceE-EEEccCCCCCcEEEEEeCCC---cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE-ECCCC-EEEEE
Q 007855 381 GKIPYV-VKLNPDDDKQNILLAGMSDK---KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS-SDDKS-LRVWE 454 (587)
Q Consensus 381 ~~~~~~-~~~~~~~~~~~~l~sg~~dg---~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~-s~Dg~-I~iwd 454 (587)
+..+.. +.+++++ .+++++..++ .|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ..++. |.+|+
T Consensus 82 ~~~~~~~~~~s~dg---~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~ 157 (331)
T 3u4y_A 82 GQSSMADVDITPDD---QFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFK 157 (331)
T ss_dssp CSSCCCCEEECTTS---SEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEE
T ss_pred CCCCccceEECCCC---CEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccceEECCCCCEEEEEecCCCceEEEEE
Confidence 776666 8888865 3555555443 899999999998887764 4557999999999855544 56688 99999
Q ss_pred CCCCeEE----EEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 455 FGIPVVI----KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 455 ~~~~~~~----~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
+.....+ .... ........++|+|+|++|++++ .++.|.+||+.++........+.. ...+..++|+|+|+
T Consensus 158 ~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~---~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 158 IDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT---NNLPGTIVVSRDGS 233 (331)
T ss_dssp ECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC---SSCCCCEEECTTSS
T ss_pred ECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC---CCCCceEEECCCCC
Confidence 8753222 1111 3445678999999999766555 689999999987655211222222 24456799999999
Q ss_pred EEEEEc-CCCcEEEEeCCCCee--EEEEecC----CC---CEEEEEEcCCCCCEE-EEEECCCcEEEcC
Q 007855 530 FVMSGD-GEGKCWFWDWKSCKV--FRTLKCH----EG---VCIGCEWHPLEQSKV-ATCGWDGLIKYWD 587 (587)
Q Consensus 530 ~L~sgs-~dG~I~vwd~~t~~~--~~~l~~h----~~---~V~~v~~sp~~~~~l-~s~g~DG~I~iWD 587 (587)
+|++++ .++.|.+||+.+++. +..+..+ .. .+..++|+| ++++| +++..++.|.|||
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~d 301 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNK-TETKLFISANISRELKVFT 301 (331)
T ss_dssp EEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred EEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECC-CCCEEEEecCCCCcEEEEE
Confidence 876655 577899999999887 5544433 22 235689999 55555 5555677999996
No 133
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.91 E-value=2.5e-21 Score=198.55 Aligned_cols=272 Identities=14% Similarity=0.101 Sum_probs=211.1
Q ss_pred CCCCeEEEEEccCCCcEEEEEeC-------CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-eCCCeEEE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGM-------DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKY 366 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~-------Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg~I~v 366 (587)
....+..++|+|+ +++|++++. ++.|.+||. .+++.+..+.. ...+..++|+++|++++++ ..++.|.+
T Consensus 39 ~~~~~~~~~~s~d-g~~l~~~~~~~~~~~~~~~v~~~d~-~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 39 VGKGAYEMAYSQQ-ENALWLATSQSRKLDKGGVVYRLDP-VTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTA 115 (353)
T ss_dssp EESSEEEEEEETT-TTEEEEEECCCTTTEESEEEEEECT-TTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEE
T ss_pred hccCccceEECCC-CCEEEEEcCCCcCCCCCccEEEEcC-CCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEE
Confidence 3457889999999 666666653 678999999 67777777754 3458899999999966554 55799999
Q ss_pred EECCCCcEEEEeecCCc----------ceEEEEccCCCCCcEEEEE-eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEe
Q 007855 367 WDTETGQVIRTFSTGKI----------PYVVKLNPDDDKQNILLAG-MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~----------~~~~~~~~~~~~~~~l~sg-~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s 435 (587)
||+.+++.+..+..+.. +..+.+++++. .+++++ ..++.|.+||+.+++.+..+..+...+.+++|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATN--TVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTT--EEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCC--EEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 99999999888876432 45677777543 344444 357899999999999998887666778999999
Q ss_pred cCCCEEEEEECCCCEEEEECCCCeEEEEeec---CCCcceeEEEEeCCCCEEEEEECC-CeEEEEEcCCceeecccceec
Q 007855 436 DNNRRFVTSSDDKSLRVWEFGIPVVIKYISE---PHMHSMPSISLHPNTNWLAAQSLD-NQILIYSTRERFQLNKKKRFA 511 (587)
Q Consensus 436 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~---~~~~~i~~i~~sp~g~~l~~~s~d-g~I~iwd~~~~~~~~~~~~~~ 511 (587)
|+++++++++.++.|.+||+.++.....+.. .+...+..++|+|++++|++++.+ +.|.+||+.++..+.....
T Consensus 194 ~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-- 271 (353)
T 3vgz_A 194 SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA-- 271 (353)
T ss_dssp TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--
T ss_pred CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--
Confidence 9999999999999999999999988877654 234467789999999988777655 9999999987765433322
Q ss_pred ccccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 512 GHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 512 ~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
+. ...++|+|+|++|++++ .++.|.+||..+++.+..+..+. .+.+++|+| ++++|+.+..+
T Consensus 272 ~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~v~~~~ 334 (353)
T 3vgz_A 272 PE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT-HPNSLALSA-DGKTLYVSVKQ 334 (353)
T ss_dssp SS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS-EEEEEEECT-TSCEEEEEEEC
T ss_pred CC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC-CCCeEEEcC-CCCEEEEEEcc
Confidence 11 13489999999766555 68999999999999998887544 679999999 55555544443
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=9.7e-23 Score=231.47 Aligned_cols=279 Identities=11% Similarity=0.042 Sum_probs=210.2
Q ss_pred CCCeEEEEEccCCCcEEEEEeC-CC-----eEEEEecCCCCeeeEEEcccCC------------------------ceee
Q 007855 296 TKGVSAIRFFPKYGHLILSAGM-DT-----KVKIWDVFNSGKCMRTYMGHSK------------------------AVRD 345 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~-Dg-----~I~iWd~~~~~~~~~~~~~h~~------------------------~V~~ 345 (587)
...|.+++|+|+ |++|++++. |+ .|++||+ .+++....+..+.. .|.+
T Consensus 36 ~~~~~~~~~Spd-G~~la~~~~~d~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPD-GSRVTFLRGKDSDRNQLDLWSYDI-GSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTT-SSEEEEEECCSSCTTEEEEEEEET-TTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecC-CCEEEEEeccCCCCcccEEEEEEC-CCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 456999999999 999999988 88 9999999 67777777665543 3899
Q ss_pred EEEecCCCeEEEEeCCCeEEEEECCCC---cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE
Q 007855 346 ISFCNDGTKFLTASYDKNIKYWDTETG---QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY 422 (587)
Q Consensus 346 l~fs~dg~~l~s~s~Dg~I~vWd~~t~---~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~ 422 (587)
++|+|||++|++++. +.|.+||+.++ ..............+.|+|++. .|++++ ++.|++||+.+++.....
T Consensus 114 ~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~---~la~~~-~~~i~~~d~~~g~~~~~~ 188 (741)
T 2ecf_A 114 YQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGG---FVSFIR-GRNLWVIDLASGRQMQLT 188 (741)
T ss_dssp CEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSS---EEEEEE-TTEEEEEETTTTEEEECC
T ss_pred eEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCC---EEEEEe-CCcEEEEecCCCCEEEec
Confidence 999999999999987 99999999988 5444333445567788888653 566655 569999999998776655
Q ss_pred ccCCCC----------------eeEEEEecCCCEEEEEECCC---------------------------------CEEEE
Q 007855 423 DQHLGA----------------VNTITFVDNNRRFVTSSDDK---------------------------------SLRVW 453 (587)
Q Consensus 423 ~~h~~~----------------I~~i~~sp~~~~l~s~s~Dg---------------------------------~I~iw 453 (587)
..+... +.++.|+|+|++|++++.|+ .|.+|
T Consensus 189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~ 268 (741)
T 2ecf_A 189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI 268 (741)
T ss_dssp CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence 444332 47899999999999998765 78899
Q ss_pred ECCC-CeEEEEeec-CCCcceeEEEEeCCCCEEEEEEC-----CCeEEEEEcCCceeecccceeccccccc---ceEEEE
Q 007855 454 EFGI-PVVIKYISE-PHMHSMPSISLHPNTNWLAAQSL-----DNQILIYSTRERFQLNKKKRFAGHIVAG---YACQVN 523 (587)
Q Consensus 454 d~~~-~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~---~i~~l~ 523 (587)
|+.+ +........ .+...+..++| |+|++|++++. +..|++||+.++....... .+. .. .+..++
T Consensus 269 d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~-~~~~~~~~~~~ 343 (741)
T 2ecf_A 269 SPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETS-PTWVPLHNSLR 343 (741)
T ss_dssp CSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EEC-SSCCCCCSCCE
T ss_pred ECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCC-CCcCCcCCceE
Confidence 9988 765443322 36678999999 99999998764 5679999998775433222 111 11 234689
Q ss_pred EcCCCCEEEEEcCCCcEEEEeCC-CCeeEEEEecCCCCEEEE-EEcCCCCCEEEEEECCC--cEEEcC
Q 007855 524 FSPDGRFVMSGDGEGKCWFWDWK-SCKVFRTLKCHEGVCIGC-EWHPLEQSKVATCGWDG--LIKYWD 587 (587)
Q Consensus 524 ~spdg~~L~sgs~dG~I~vwd~~-t~~~~~~l~~h~~~V~~v-~~sp~~~~~l~s~g~DG--~I~iWD 587 (587)
|+|||+++++++.+|.+.||.+. .+. ...+..|...|..+ .|+|++..++++++.++ .++||+
T Consensus 344 ~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~ 410 (741)
T 2ecf_A 344 FLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA 410 (741)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred ECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence 99999999999999987777765 445 77788888888887 59994443445566666 888884
No 135
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.91 E-value=7.8e-22 Score=200.57 Aligned_cols=261 Identities=10% Similarity=0.072 Sum_probs=201.5
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcccC-C-ceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEeecCC----
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHS-K-AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTGK---- 382 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~-~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~~---- 382 (587)
.+|++++.++.|.+||+ .+++.+..+.... . .+.+++|+|+|++++ +++.++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 80 (337)
T 1pby_B 2 DYILAPARPDKLVVIDT-EKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEER 80 (337)
T ss_dssp EEEEEEETTTEEEEEET-TTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEE
T ss_pred cEEEEcCCCCeEEEEEC-CCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccc
Confidence 57899999999999999 6788877775332 2 588999999998765 55567899999999999988887654
Q ss_pred --cceEEEEccCCCCCcEEEEEe------------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC
Q 007855 383 --IPYVVKLNPDDDKQNILLAGM------------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK 448 (587)
Q Consensus 383 --~~~~~~~~~~~~~~~~l~sg~------------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg 448 (587)
.+..+.+++++. .++++. .++.|.+||+.+++.+..+.. ...+.+++|+|++++|+++ ++
T Consensus 81 ~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~ 154 (337)
T 1pby_B 81 VKSLFGAALSPDGK---TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWARDGSKLYGL--GR 154 (337)
T ss_dssp EECTTCEEECTTSS---EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECTTSSCEEEE--SS
T ss_pred cccccceEECCCCC---EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEECCCCCEEEEe--CC
Confidence 566788887553 566654 579999999999988877764 4568889999999988888 68
Q ss_pred CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC------------------------eEEEEEcCCceee
Q 007855 449 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN------------------------QILIYSTRERFQL 504 (587)
Q Consensus 449 ~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg------------------------~I~iwd~~~~~~~ 504 (587)
.|.+||+.++.....+..... ...+.|+|++.+|++.+..+ .|.+||+.++...
T Consensus 155 ~i~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~ 232 (337)
T 1pby_B 155 DLHVMDPEAGTLVEDKPIQSW--EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232 (337)
T ss_dssp SEEEEETTTTEEEEEECSTTT--TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE
T ss_pred eEEEEECCCCcEeeeeecccc--CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce
Confidence 999999999988776654321 11237789888765544332 4689998876543
Q ss_pred cccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 505 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 505 ~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
...+..+ ...+..++|+|+|++|+++ ++.|++||+.+++.+..+..+ ..+.+++|+| ++++|++++.++.|.
T Consensus 233 --~~~~~~~--~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~i~ 304 (337)
T 1pby_B 233 --MREVRIM--DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLP-HSYYSVNVST-DGSTVWLGGALGDLA 304 (337)
T ss_dssp --EEEEEEC--SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECS-SCCCEEEECT-TSCEEEEESBSSEEE
T ss_pred --EeecCCC--CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCC-CceeeEEECC-CCCEEEEEcCCCcEE
Confidence 1222222 3456679999999999988 689999999999988888754 4568999999 677888888999999
Q ss_pred EcC
Q 007855 585 YWD 587 (587)
Q Consensus 585 iWD 587 (587)
+||
T Consensus 305 v~d 307 (337)
T 1pby_B 305 AYD 307 (337)
T ss_dssp EEE
T ss_pred EEE
Confidence 996
No 136
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.89 E-value=9.4e-22 Score=195.33 Aligned_cols=251 Identities=13% Similarity=0.126 Sum_probs=185.5
Q ss_pred EEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC-CcEEEEeecC--CcceEEEEc
Q 007855 314 SAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG--KIPYVVKLN 390 (587)
Q Consensus 314 sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~--~~~~~~~~~ 390 (587)
+++.|++|++||+ .+++.. .+..|...|.+++|+|+|++|++++ ++.|.+||+.+ ++....+... ..+..+.|+
T Consensus 17 ~~~~~~~i~~~d~-~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s 93 (297)
T 2ojh_A 17 GGSMRSSIEIFNI-RTRKMR-VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGIS 93 (297)
T ss_dssp -CCCCEEEEEEET-TTTEEE-EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEEC
T ss_pred CCCcceeEEEEeC-CCCcee-eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEEC
Confidence 4567899999999 566655 5556899999999999999999987 78999999999 8777665444 345567888
Q ss_pred cCCCCCcEEEEEe--CC--CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE-EEECCCCEEEEECC--CCeEEEE
Q 007855 391 PDDDKQNILLAGM--SD--KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV-TSSDDKSLRVWEFG--IPVVIKY 463 (587)
Q Consensus 391 ~~~~~~~~l~sg~--~d--g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~-s~s~Dg~I~iwd~~--~~~~~~~ 463 (587)
+++ ..|++++ .+ ..|..|++.++. ...+..+ ..+.+++|+|+++.|+ +++.++.+.||+++ .... ..
T Consensus 94 pdg---~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~ 167 (297)
T 2ojh_A 94 PDG---ALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TR 167 (297)
T ss_dssp TTS---SEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EE
T ss_pred CCC---CEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eE
Confidence 765 4677777 22 455555666655 3344333 4589999999999877 77889999999864 3333 33
Q ss_pred eecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcC-CceeecccceecccccccceEEEEEcCCCCEEEEEcCC----
Q 007855 464 ISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE---- 537 (587)
Q Consensus 464 ~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d---- 537 (587)
+ ..+...+.+++|+|++++|++++ .++.+.+|++. ....+ ..+..+ ...+..++|+|+|++|++++.+
T Consensus 168 ~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~---~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 168 L-THGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSV---ERITDS--AYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp C-CCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCE---EECCCC--SEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred c-ccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCc---EEEecC--CcccCCeEECCCCCEEEEEEcCCCCC
Confidence 3 24667899999999999888776 48899999875 22222 223333 3467789999999999888765
Q ss_pred -------CcEEEEeCCCCee--EEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 538 -------GKCWFWDWKSCKV--FRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 538 -------G~I~vwd~~t~~~--~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
+.|++||+.+++. +..+.+|...+.+++|+| ++.+|++++.+
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~~l~~~~~~ 292 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSP-DGDEFAYVRYF 292 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCT-TSSEEEEEEEC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCcccccceECC-CCCEEEEEEec
Confidence 5699999988765 444557888899999999 66677776654
No 137
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.89 E-value=2.6e-20 Score=189.81 Aligned_cols=295 Identities=13% Similarity=0.107 Sum_probs=200.3
Q ss_pred EeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCC-CeEEEEecCC-CCe-
Q 007855 255 FHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMD-TKVKIWDVFN-SGK- 331 (587)
Q Consensus 255 ~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~D-g~I~iWd~~~-~~~- 331 (587)
+......+..++.|....... .+.+.. ..|...+.+++|+|+ +++|++++.+ +.|.+|++.. .+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~----------~~~~~~-~~~~~~~~~~~~spd-g~~l~~~~~~~~~v~~~~~~~~~~~~ 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGA----------LTLTQV-VDVPGQVQPMVVSPD-KRYLYVGVRPEFRVLAYRIAPDDGAL 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSC----------EEEEEE-EECSSCCCCEEECTT-SSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred EEEeCCCCCeEEEEEECCCCc----------EEEeee-EecCCCCceEEECCC-CCEEEEeecCCCeEEEEEecCCCCce
Confidence 334445677778886643110 112333 347778999999999 8877777776 9999999931 333
Q ss_pred -eeEEEcccCCceeeEEEecCCCeEEEEeC-CCeEEEEEC---CCCcEEEEeecCCcceEEEEccCCCCCcEEEEEe-CC
Q 007855 332 -CMRTYMGHSKAVRDISFCNDGTKFLTASY-DKNIKYWDT---ETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGM-SD 405 (587)
Q Consensus 332 -~~~~~~~h~~~V~~l~fs~dg~~l~s~s~-Dg~I~vWd~---~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~-~d 405 (587)
.+..+..+. .+.+++|+|++++|++++. ++.|.+||+ .+.+.+..+.....+..+.+.+++. .+++++ .+
T Consensus 75 ~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~ 150 (343)
T 1ri6_A 75 TFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNR---TLWVPALKQ 150 (343)
T ss_dssp EEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSS---EEEEEEGGG
T ss_pred eeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCC---EEEEecCCC
Confidence 344555444 8899999999998877765 889999999 4445666666666677788888653 455555 89
Q ss_pred CcEEEEeCCC-CcEEE----EEcc-CCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCC--CeE--EEEeec---C--CC
Q 007855 406 KKIVQWDMNT-KEITQ----EYDQ-HLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGI--PVV--IKYISE---P--HM 469 (587)
Q Consensus 406 g~I~iwD~~t-~~~~~----~~~~-h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~--~~~--~~~~~~---~--~~ 469 (587)
+.|.+||+.+ ++... .+.. ....+.+++|+|+++++++++ .++.|.+|++.. +.. ...+.. . ..
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 230 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDT 230 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSC
T ss_pred CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccccc
Confidence 9999999987 65432 2222 345788999999999776665 789999999953 221 222221 1 12
Q ss_pred cceeEEEEeCCCCEEEEEE-CCCeEEEEEcCC-ceeecccceecccccccceEEEEEcCCCCEEEEEc-CCCcEEEEeC-
Q 007855 470 HSMPSISLHPNTNWLAAQS-LDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDW- 545 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~- 545 (587)
..+..++|+|++++|+++. .++.|.+|++.. .........+..+ ..+..++|+|+|++|++++ .++.|.+|++
T Consensus 231 ~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 231 RWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTE---TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECS---SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCC---CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 3466899999999887555 789999999973 1111122222222 2266799999999988887 6899999954
Q ss_pred -CCCe--eEEEEecCCCCEEEEEEcCC
Q 007855 546 -KSCK--VFRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 546 -~t~~--~~~~l~~h~~~V~~v~~sp~ 569 (587)
.+++ .+..+... ....+++|.++
T Consensus 308 ~~~g~~~~~~~~~~g-~~p~~i~~~~~ 333 (343)
T 1ri6_A 308 GEQGLLHEKGRYAVG-QGPMWVVVNAH 333 (343)
T ss_dssp TTTTEEEEEEEEECS-SSCCEEEEEEE
T ss_pred CCCceeeEccccccC-CCCeeEEEEcc
Confidence 4664 34455443 34567788773
No 138
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=2.3e-20 Score=190.07 Aligned_cols=274 Identities=9% Similarity=0.032 Sum_probs=194.7
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEE-EEeCCCeEEEEecCCCCee-eEEEcccCCceeeEEEecCCCeEEEEeCCC-
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLIL-SAGMDTKVKIWDVFNSGKC-MRTYMGHSKAVRDISFCNDGTKFLTASYDK- 362 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~-sgs~Dg~I~iWd~~~~~~~-~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg- 362 (587)
.+++..+..+...+ +++|+|+ +++|+ ++..++.|.+||+ .+++. ...+..+..++.+++|+|+|++|+++..++
T Consensus 30 ~~~~~~~~~~~~~~-~~~~s~d-g~~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~ 106 (331)
T 3u4y_A 30 LEILNQITLGYDFV-DTAITSD-CSNVVVTSDFCQTLVQIET-QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNH 106 (331)
T ss_dssp CCEEEEEECCCCEE-EEEECSS-SCEEEEEESTTCEEEEEEC-SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSS
T ss_pred cceeeeEEccCCcc-eEEEcCC-CCEEEEEeCCCCeEEEEEC-CCCceeEEecccCCCCccceEECCCCCEEEEecCCCC
Confidence 34556666667777 9999999 66554 4555899999999 56666 777777777766699999999999555543
Q ss_pred --eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc-EEEEeCCCCcEE----EEEccCCCCeeEEEEe
Q 007855 363 --NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK-IVQWDMNTKEIT----QEYDQHLGAVNTITFV 435 (587)
Q Consensus 363 --~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-I~iwD~~t~~~~----~~~~~h~~~I~~i~~s 435 (587)
.|.+||+.+++.+..+..+..+..+.++|++. .+++++..++. |.+|++.....+ .........+.+++|+
T Consensus 107 ~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s 184 (331)
T 3u4y_A 107 PFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGN--GLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFT 184 (331)
T ss_dssp SCEEEEEETTTTEEEEEEECCTTEEEEEECTTSS--CEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEEC
T ss_pred cccEEEEECCCCCeEEEEECCCCccceEECCCCC--EEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEEC
Confidence 89999999999999998888888899988654 46667677788 999998754332 1122345668999999
Q ss_pred cCCCEEEEEE-CCCCEEEEECCCCeE---EEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeeccccee
Q 007855 436 DNNRRFVTSS-DDKSLRVWEFGIPVV---IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRF 510 (587)
Q Consensus 436 p~~~~l~s~s-~Dg~I~iwd~~~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~ 510 (587)
|+++++++++ .++.|.+||+.++.. +..+. ....+..++|+|+|++|++++ .++.|.+||+.++.... ...+
T Consensus 185 pdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~-~~~~ 261 (331)
T 3u4y_A 185 PDGNFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF-VKSF 261 (331)
T ss_dssp TTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE-EEEE
T ss_pred CCCCEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee-eccc
Confidence 9999765555 688999999988776 66654 346678999999999877665 47889999998765411 1111
Q ss_pred ccc-----ccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 511 AGH-----IVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 511 ~~~-----~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
... .....+..++|+|+|++|++++ .++.|.+||+.... +..+......-..+.++|
T Consensus 262 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~-~~~~~~~~~~g~~~~~~~ 324 (331)
T 3u4y_A 262 GHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKV-VGYVAGIEANGGIAICHP 324 (331)
T ss_dssp ECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE-EEECTTCCCBSCEEECCC
T ss_pred ccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc-ccceecccccCCeEEECC
Confidence 111 0011124589999999886554 56799999997654 333433333222344455
No 139
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=9.8e-22 Score=222.43 Aligned_cols=277 Identities=10% Similarity=0.061 Sum_probs=198.4
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC---ceeeEEEecCCCeEEEEeCC---------CeEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASYD---------KNIK 365 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~---~V~~l~fs~dg~~l~s~s~D---------g~I~ 365 (587)
.+.+++|+|+ |+++++ +.||+|++||+ .+++....+.+|.. .|.+++|||||++|++++.+ +.|.
T Consensus 18 ~~~~~~~spd-g~~~~~-~~dg~i~~~d~-~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 18 HDPEAKWISD-TEFIYR-EQKGTVRLWNV-ETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCBSSS-SCBCCC-CSSSCEEEBCG-GGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred cccccEEcCC-CcEEEE-eCCCCEEEEEC-CCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 3678899999 777766 78999999999 67777777877765 49999999999999999874 7888
Q ss_pred EEECCCCcEEEEeecCC----cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe------------
Q 007855 366 YWDTETGQVIRTFSTGK----IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV------------ 429 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I------------ 429 (587)
+||+.+++. ..+.... ....+.|+|++. .|+.++. +.|++||+.+++..+....+...+
T Consensus 95 ~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~---~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 95 LSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ---QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT---CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEECCCCce-EeccCCccccccccccEECCCCC---EEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEE
Confidence 999999886 3333221 145677887654 4666654 899999999988777665544433
Q ss_pred ------eEEEEecCCCEEEEEECCC----------------------------------CEEEEECCCCeEEEEeecC--
Q 007855 430 ------NTITFVDNNRRFVTSSDDK----------------------------------SLRVWEFGIPVVIKYISEP-- 467 (587)
Q Consensus 430 ------~~i~~sp~~~~l~s~s~Dg----------------------------------~I~iwd~~~~~~~~~~~~~-- 467 (587)
.++.|+|+|++|++++.++ .|++||+.++.....+..+
T Consensus 170 e~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~ 249 (723)
T 1xfd_A 170 EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDD 249 (723)
T ss_dssp TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCC
T ss_pred EeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCcc
Confidence 7899999999999987653 7999999887754444332
Q ss_pred ---CCcceeEEEEeCCCCEEEEEECC----CeEEEEEcCCceeecccceecccccccce----EEEEEcCCCCEEEE--E
Q 007855 468 ---HMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYA----CQVNFSPDGRFVMS--G 534 (587)
Q Consensus 468 ---~~~~i~~i~~sp~g~~l~~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i----~~l~~spdg~~L~s--g 534 (587)
+...+..++|+|+|++|++.+.. ..|++||+.++......... + .+.+ ..++|||||++|+. +
T Consensus 250 ~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~--~--~~~~~~~~~~~~~spdg~~l~~~~~ 325 (723)
T 1xfd_A 250 PRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE--S--EAWLHRQNEEPVFSKDGRKFFFIRA 325 (723)
T ss_dssp GGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE--C--SSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred CCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec--c--CCEEeccCCCceEcCCCCeEEEEEe
Confidence 25678999999999988776533 57999999876543222111 1 1222 25899999997764 4
Q ss_pred cCCC------cEEEEe-CCCCe--eEEEEecCCCCEEE-EEEcCCCCCEEEEEECC---CcEEEcC
Q 007855 535 DGEG------KCWFWD-WKSCK--VFRTLKCHEGVCIG-CEWHPLEQSKVATCGWD---GLIKYWD 587 (587)
Q Consensus 535 s~dG------~I~vwd-~~t~~--~~~~l~~h~~~V~~-v~~sp~~~~~l~s~g~D---G~I~iWD 587 (587)
..+| .|++|| ..++. +...+..+...+.. ++|+| +++.|+..+.+ +.++||+
T Consensus 326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~sp-dg~~l~~~~~~~~~~~~~l~~ 390 (723)
T 1xfd_A 326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDE-KGNKIYFLSTEDLPRRRQLYS 390 (723)
T ss_dssp ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEET-TTTEEEEEESSSCTTCCEEEE
T ss_pred cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcC-CCCEEEEEEcCCCCcceEEEE
Confidence 5666 577788 34444 14445444444554 69999 66677655554 7888884
No 140
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=1.1e-20 Score=191.90 Aligned_cols=258 Identities=10% Similarity=0.026 Sum_probs=194.7
Q ss_pred ceEEEEc-CCCC-CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-c----CCceeeEEEecCCCeEEEEe
Q 007855 287 RLVHTWS-GHTK-GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-H----SKAVRDISFCNDGTKFLTAS 359 (587)
Q Consensus 287 ~~i~tl~-gH~~-~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-h----~~~V~~l~fs~dg~~l~s~s 359 (587)
+++.++. ++.. .+.+++|+|++..++++++.++.|.+||+ .+++.+..+.. + ...+.+++|+|+|++|++++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 100 (337)
T 1pby_B 22 AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDL-VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEET-TTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEE
T ss_pred cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEEC-CCCCeEeeEEcCCcccccccccceEECCCCCEEEEEe
Confidence 4455554 3322 48899999993345667777899999999 67777766653 2 23688999999999999886
Q ss_pred ------------CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC
Q 007855 360 ------------YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 427 (587)
Q Consensus 360 ------------~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~ 427 (587)
.++.|.+||+.+++.+..+..+..+..+.+++++. .|+++ ++.|.+||+.+++.+..+..+..
T Consensus 101 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~i~~~d~~~~~~~~~~~~~~~ 175 (337)
T 1pby_B 101 SPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS---KLYGL--GRDLHVMDPEAGTLVEDKPIQSW 175 (337)
T ss_dssp EEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSS---CEEEE--SSSEEEEETTTTEEEEEECSTTT
T ss_pred cccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCC---EEEEe--CCeEEEEECCCCcEeeeeecccc
Confidence 57999999999999998888777777888888653 35555 68999999999998877765431
Q ss_pred CeeEEEEecCCCEEEEEECCC------------------------CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCE
Q 007855 428 AVNTITFVDNNRRFVTSSDDK------------------------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNW 483 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~Dg------------------------~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~ 483 (587)
...+.|+|++..++.++..+ .|.+||+.++........++...+.+++|+|++++
T Consensus 176 -~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 254 (337)
T 1pby_B 176 -EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTR 254 (337)
T ss_dssp -TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSE
T ss_pred -CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCE
Confidence 11337888888766554333 46899999887653323345567788999999999
Q ss_pred EEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC
Q 007855 484 LAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG 559 (587)
Q Consensus 484 l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~ 559 (587)
|+++ ++.|.+||+.++..+.... . ...+.+++|+|+|++|++++.++.|.+||+.+++.+..+..+.+
T Consensus 255 l~~~--~~~v~~~d~~~~~~~~~~~---~---~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~~ 322 (337)
T 1pby_B 255 AFGA--YNVLESFDLEKNASIKRVP---L---PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN 322 (337)
T ss_dssp EEEE--ESEEEEEETTTTEEEEEEE---C---SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECGGG
T ss_pred EEEe--CCeEEEEECCCCcCcceec---C---CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEcCCC
Confidence 9988 7999999998775543222 1 13456799999999999999999999999999999988876543
No 141
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=4.8e-21 Score=211.66 Aligned_cols=267 Identities=11% Similarity=0.074 Sum_probs=197.0
Q ss_pred CCCeEEEEEccCCCcEEEEEeC-CCeEEEEecCCCCeeeEEEcccC-CceeeEEEecCCCeEEEEeC---CCeEEEEECC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASY---DKNIKYWDTE 370 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~l~s~s~---Dg~I~vWd~~ 370 (587)
..+|.+++|+|+ |+.||+++. ||+++||++ ..+...+ +..|. ..|..++|+|| +.+++++. +....||.+.
T Consensus 21 ~~~~~~~~~~~D-G~~la~~s~~~g~~~lw~~-~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~ 96 (582)
T 3o4h_A 21 AVEKYSLQGVVD-GDKLLVVGFSEGSVNAYLY-DGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVN 96 (582)
T ss_dssp HSCEEEEEEEET-TTEEEEEEEETTEEEEEEE-ETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEE
T ss_pred ccchheeecCCC-CCeEEEEEccCCceeEEEE-cCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEe
Confidence 447999999999 888888877 999999998 5555544 44454 68999999999 77777765 4555665443
Q ss_pred C---CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 371 T---GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 371 t---~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
. +... .+..........++++++ .++++...++.+.+||+.+++.......+. .++.|+|+|++|++++.+
T Consensus 97 ~~~~g~~~-~l~~~~~~~~~~~s~dg~--~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~ 170 (582)
T 3o4h_A 97 TSRPGEEQ-RLEAVKPMRILSGVDTGE--AVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFF 170 (582)
T ss_dssp TTSTTCCE-ECTTSCSBEEEEEEECSS--CEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEE
T ss_pred ccCCCccc-cccCCCCceeeeeCCCCC--eEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEc
Confidence 2 2222 444444555778888764 455555566666799999987666554333 899999999999988877
Q ss_pred ----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC--eEEEEEcCCceeecccceecccccccceEE
Q 007855 448 ----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHIVAGYACQ 521 (587)
Q Consensus 448 ----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~ 521 (587)
+.|++||+.++.... + ..+...+..++|+|+|++|+++..++ .|++||+.++... . +.++ ...+..
T Consensus 171 ~~~~~~i~~~d~~~g~~~~-l-~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~---~~~~--~~~~~~ 242 (582)
T 3o4h_A 171 GGGRVSLFTSNLSSGGLRV-F-DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-D---LELP--SKDFSS 242 (582)
T ss_dssp ETTEEEEEEEETTTCCCEE-E-CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-E---CCCS--CSHHHH
T ss_pred CCCCeEEEEEcCCCCCceE-e-ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-E---ccCC--CcChhh
Confidence 789999998877653 3 35677889999999999999888888 8999999876544 2 2222 112222
Q ss_pred EE--------EcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCc---EEEcC
Q 007855 522 VN--------FSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGL---IKYWD 587 (587)
Q Consensus 522 l~--------~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~---I~iWD 587 (587)
++ |+|||.++++++.+|.+++|++ ++... .+.+.|.+++|+ ++.++++++.+.. |.+||
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~---~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d 312 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVE---APQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLP 312 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEEC---CCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeec---cCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEc
Confidence 34 9999999999999999999999 66544 345678899999 5667888887744 55554
No 142
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.87 E-value=2.7e-20 Score=219.79 Aligned_cols=279 Identities=10% Similarity=0.109 Sum_probs=222.1
Q ss_pred EEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 289 VHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 289 i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
...+.+|...|.++.|+++ .++++++.++.+.||.+...+.....+..|. .+..++|+|+|++|+++. ++.|.+|+
T Consensus 196 ~~~l~~~~~~v~~~~~s~d--~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d 271 (1045)
T 1k32_A 196 FKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFN 271 (1045)
T ss_dssp EEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEEC
T ss_pred eEECcCCCCcccceEEeCC--EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEec
Confidence 4556899999999999987 6778888899999998854455666676665 467889999999999884 89999999
Q ss_pred CCCCcEEEEeecCC------------cceEEEEc-cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC-CeeEEEE
Q 007855 369 TETGQVIRTFSTGK------------IPYVVKLN-PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG-AVNTITF 434 (587)
Q Consensus 369 ~~t~~~i~~~~~~~------------~~~~~~~~-~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~-~I~~i~~ 434 (587)
+...... .+.... ....+.|+ |++. .|++++ ++.|.+|++.++.... +..|.. .+.++.|
T Consensus 272 ~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~---~la~~~-~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~ 345 (1045)
T 1k32_A 272 PDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGD---LIAFVS-RGQAFIQDVSGTYVLK-VPEPLRIRYVRRGG 345 (1045)
T ss_dssp TTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGG---CEEEEE-TTEEEEECTTSSBEEE-CSCCSCEEEEEECS
T ss_pred CCceEee-eeccCcccccccccccccccceeeecCCCCC---EEEEEE-cCEEEEEcCCCCceEE-ccCCCcceEEeeeE
Confidence 9555443 544322 46678888 7653 455555 8899999998887554 566777 8999999
Q ss_pred ecCCCEEEEEECCCCEE-EEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceeccc
Q 007855 435 VDNNRRFVTSSDDKSLR-VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGH 513 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~-iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~ 513 (587)
+ +++.|++++.++.|. +|++....... +. .+...+..++|+|+|++|++++.++.|++||+.++..... ..++
T Consensus 346 s-dg~~l~~~s~~~~l~~~~d~~~~~~~~-l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~---~~~~ 419 (1045)
T 1k32_A 346 D-TKVAFIHGTREGDFLGIYDYRTGKAEK-FE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI---ERSR 419 (1045)
T ss_dssp S-SEEEEEEEETTEEEEEEEETTTCCEEE-CC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE---EECS
T ss_pred c-CCCeEEEEECCCceEEEEECCCCCceE-ec-CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe---ccCC
Confidence 9 999999999988888 99998776543 33 5777899999999999999999999999999987654322 2233
Q ss_pred ccccceEEEEEcCCCCEEEEEcCCC----------cEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 514 IVAGYACQVNFSPDGRFVMSGDGEG----------KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 514 ~~~~~i~~l~~spdg~~L~sgs~dG----------~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
...+..++|||||++|++++.++ .|++||+.+++ +..+..|...+..++|+| ++.+|++++.++..
T Consensus 420 --~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 420 --EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLD 495 (1045)
T ss_dssp --SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCC
T ss_pred --CCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCC
Confidence 34566799999999998887654 89999999987 677778888899999999 77889999988877
Q ss_pred EEcC
Q 007855 584 KYWD 587 (587)
Q Consensus 584 ~iWD 587 (587)
.+|+
T Consensus 496 ~~~~ 499 (1045)
T 1k32_A 496 PSPD 499 (1045)
T ss_dssp CEEC
T ss_pred cCcc
Confidence 7774
No 143
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=1.8e-20 Score=211.68 Aligned_cols=275 Identities=10% Similarity=0.101 Sum_probs=198.7
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC----
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET---- 371 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t---- 371 (587)
...|.+++|+|+ +.++++. ++.|++||+ .+++.. .+..+...+.+++|+|||++|+++ .++.|.+||+.+
T Consensus 81 ~~~v~~~~~spd-~~~~~~~--~~~i~~~d~-~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~ 154 (706)
T 2z3z_A 81 AFPSFRTLDAGR-GLVVLFT--QGGLVGFDM-LARKVT-YLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEG 154 (706)
T ss_dssp -CCCEEEEETTT-TEEEEEE--TTEEEEEET-TTTEEE-EEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSC
T ss_pred ccCceeEEECCC-CeEEEEE--CCEEEEEEC-CCCceE-EccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCccccc
Confidence 367999999999 7666664 599999999 566554 445577789999999999999985 679999999998
Q ss_pred -CcEEEEeecCCc---------------ceEEEEccCCCCCcEEEEEe--------------------------------
Q 007855 372 -GQVIRTFSTGKI---------------PYVVKLNPDDDKQNILLAGM-------------------------------- 403 (587)
Q Consensus 372 -~~~i~~~~~~~~---------------~~~~~~~~~~~~~~~l~sg~-------------------------------- 403 (587)
++.......+.. ...+.|+|++ ..|++++
T Consensus 155 ~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~ 231 (706)
T 2z3z_A 155 MSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG---SCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTP 231 (706)
T ss_dssp CCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS---SEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSC
T ss_pred CCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC---CEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCC
Confidence 876654443333 3567788865 3566665
Q ss_pred -CCCcEEEEeCCCCcEEEEEc--cCCCCeeEEEEecCCCEEEEEECCC-----CEEEEECCCCeEEEEee-cCCCc---c
Q 007855 404 -SDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDNNRRFVTSSDDK-----SLRVWEFGIPVVIKYIS-EPHMH---S 471 (587)
Q Consensus 404 -~dg~I~iwD~~t~~~~~~~~--~h~~~I~~i~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~-~~~~~---~ 471 (587)
.+..|++||+.+++...... .|...+.+++|+|++++|++++.++ .|++||+.++.....+. ..... .
T Consensus 232 ~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~ 311 (706)
T 2z3z_A 232 SHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEP 311 (706)
T ss_dssp CCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCC
T ss_pred CCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECc
Confidence 44679999999987655442 4667899999999999999988776 89999999883333332 21221 2
Q ss_pred eeEEEEeC--CCCEEEEEECCCeEEEEEcC-CceeecccceecccccccceEE-EEEcCCCCEEEEEc-CCC----cEEE
Q 007855 472 MPSISLHP--NTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGD-GEG----KCWF 542 (587)
Q Consensus 472 i~~i~~sp--~g~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~L~sgs-~dG----~I~v 542 (587)
+.+++|+| +|++|++++.++.+.||.+. ++..+ ..+..+ ...+.. ++|+|+|+.|+.++ .++ .|+.
T Consensus 312 ~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~---~~l~~~--~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 386 (706)
T 2z3z_A 312 LHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI---RQVTKG--EWEVTNFAGFDPKGTRLYFESTEASPLERHFYC 386 (706)
T ss_dssp CSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE---EECCCS--SSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred cCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE---EecCCC--CeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence 46789999 99999999999999999875 33322 222333 233544 79999999876554 444 6777
Q ss_pred EeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEE-ECC---CcEEEcC
Q 007855 543 WDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATC-GWD---GLIKYWD 587 (587)
Q Consensus 543 wd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~-g~D---G~I~iWD 587 (587)
||+.+++ ...+. |...+.+++|+| ++++|+.. +.+ +.|.+||
T Consensus 387 ~d~~~~~-~~~l~-~~~~~~~~~~sp-dg~~l~~~~~~~~~p~~i~l~d 432 (706)
T 2z3z_A 387 IDIKGGK-TKDLT-PESGMHRTQLSP-DGSAIIDIFQSPTVPRKVTVTN 432 (706)
T ss_dssp EETTCCC-CEESC-CSSSEEEEEECT-TSSEEEEEEECSSCSCEEEEEE
T ss_pred EEcCCCC-ceecc-CCCceEEEEECC-CCCEEEEEecCCCCCcEEEEEE
Confidence 8877765 34444 677799999999 55666555 433 4599886
No 144
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.87 E-value=1.4e-20 Score=213.62 Aligned_cols=265 Identities=9% Similarity=0.027 Sum_probs=195.1
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
.|.+++|+|+ |++|++++. +.|++||+ .++. .+..+..|...+.+++|+|||++|++++ ++.|.+||+.+++..
T Consensus 110 ~v~~~~~SpD-g~~l~~~~~-~~i~~~d~-~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 110 GIVDYQWSPD-AQRLLFPLG-GELYLYDL-KQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQM 185 (741)
T ss_dssp ESCCCEECTT-SSEEEEEET-TEEEEEES-SSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEE
T ss_pred CcceeEECCC-CCEEEEEeC-CcEEEEEC-CCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEE
Confidence 4899999999 888888886 99999999 4552 4456777888999999999999999987 469999999998876
Q ss_pred EEeecCCc-----------------ceEEEEccCCCCCcEEEEEeCCC--------------------------------
Q 007855 376 RTFSTGKI-----------------PYVVKLNPDDDKQNILLAGMSDK-------------------------------- 406 (587)
Q Consensus 376 ~~~~~~~~-----------------~~~~~~~~~~~~~~~l~sg~~dg-------------------------------- 406 (587)
.....+.. ...+.|+|++. .|++++.|+
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~---~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS---AIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSS---CEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCC---EEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 65443332 34578888654 466665554
Q ss_pred -cEEEEeCCC-CcEEEEEc--cCCCCeeEEEEecCCCEEEEEEC-----CCCEEEEECCCCeEEEEeecCCCc---ceeE
Q 007855 407 -KIVQWDMNT-KEITQEYD--QHLGAVNTITFVDNNRRFVTSSD-----DKSLRVWEFGIPVVIKYISEPHMH---SMPS 474 (587)
Q Consensus 407 -~I~iwD~~t-~~~~~~~~--~h~~~I~~i~~sp~~~~l~s~s~-----Dg~I~iwd~~~~~~~~~~~~~~~~---~i~~ 474 (587)
.|.+||+.+ ++...... .|...+.+++| |++++|++++. +..|++||+.++.....+...... .+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 341 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNS 341 (741)
T ss_dssp EEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSC
T ss_pred eEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCc
Confidence 789999998 87655443 47788999999 99999987764 567999999988776655432222 4568
Q ss_pred EEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEE-EEcCCCCEEE-EEcCCC--cEEEEeCCC-Ce
Q 007855 475 ISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQV-NFSPDGRFVM-SGDGEG--KCWFWDWKS-CK 549 (587)
Q Consensus 475 i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l-~~spdg~~L~-sgs~dG--~I~vwd~~t-~~ 549 (587)
++|+|+|+++++++.++.+.||.+...... ..+..+ ...+..+ .|+|+|+.|+ +++.++ .++||++.. +.
T Consensus 342 ~~~spdg~~~~~~~~~g~~~l~~~~~~~~~---~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~ 416 (741)
T 2ecf_A 342 LRFLDDGSILWSSERTGFQHLYRIDSKGKA---AALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG 416 (741)
T ss_dssp CEECTTSCEEEEECTTSSCEEEEECSSSCE---EESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred eEECCCCeEEEEecCCCccEEEEEcCCCCe---eeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence 999999999999999998888876421112 223333 2345555 5999999775 455555 899999864 55
Q ss_pred eEEEEecCCCCEEEEEEcCCCCCEEEEE
Q 007855 550 VFRTLKCHEGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 550 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~ 577 (587)
....+.. ...+..++|+| ++.+|+..
T Consensus 417 ~~~~l~~-~~~~~~~~~sp-dg~~l~~~ 442 (741)
T 2ecf_A 417 QPQRLSK-APGMHSASFAR-NASVYVDS 442 (741)
T ss_dssp CCEECCC-SCSEEEEEECT-TSSEEEEE
T ss_pred Ceeeccc-CCCceEEEECC-CCCEEEEE
Confidence 5666665 56688999999 45555444
No 145
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=7.1e-21 Score=214.96 Aligned_cols=270 Identities=9% Similarity=0.117 Sum_probs=193.0
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeee-EEEcccC-----------------CceeeEEEecCCCeEEEEeC
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCM-RTYMGHS-----------------KAVRDISFCNDGTKFLTASY 360 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~-~~~~~h~-----------------~~V~~l~fs~dg~~l~s~s~ 360 (587)
+..+.|+ +..+++++.++ | +||+ .+++.+ ..+..|. ..|.+++|+|+ .+++.+.
T Consensus 28 ~~~~~w~---g~~~~~~~~~~-i-~~d~-~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~- 99 (706)
T 2z3z_A 28 VVGLQWM---GDNYVFIEGDD-L-VFNK-ANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT- 99 (706)
T ss_dssp CTTCEEE---TTEEEEEETTE-E-EEEC--------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE-
T ss_pred CCCCcCc---CCeEEEEeCCc-E-EEEC-CCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE-
Confidence 5567788 34566667777 8 9999 667663 3444433 56999999999 6666554
Q ss_pred CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-----CcEEEEEccCCCC-------
Q 007855 361 DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KEITQEYDQHLGA------- 428 (587)
Q Consensus 361 Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-----~~~~~~~~~h~~~------- 428 (587)
++.|++||+.+++.............++|+|++. .|++ ..++.|++||+.+ ++..+....+...
T Consensus 100 ~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~---~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 175 (706)
T 2z3z_A 100 QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGD---RVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAV 175 (706)
T ss_dssp TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSS---EEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCC
T ss_pred CCEEEEEECCCCceEEccCCcccccCCcCCCCCC---EEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccch
Confidence 5999999999998776666555666788888654 4555 4689999999998 7766544444333
Q ss_pred -------eeEEEEecCCCEEEEEE---------------------------------CCCCEEEEECCCCeEEEEeec-C
Q 007855 429 -------VNTITFVDNNRRFVTSS---------------------------------DDKSLRVWEFGIPVVIKYISE-P 467 (587)
Q Consensus 429 -------I~~i~~sp~~~~l~s~s---------------------------------~Dg~I~iwd~~~~~~~~~~~~-~ 467 (587)
+.++.|+|+|++|++++ .+..|++||+.++........ .
T Consensus 176 ~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~ 255 (706)
T 2z3z_A 176 HQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEP 255 (706)
T ss_dssp GGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSC
T ss_pred hhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCC
Confidence 48999999999999998 446799999998876544322 3
Q ss_pred CCcceeEEEEeCCCCEEEEEECCC-----eEEEEEcCCceeecccceecccccccceEEEEEcC--CCCEEEEEcCCCcE
Q 007855 468 HMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP--DGRFVMSGDGEGKC 540 (587)
Q Consensus 468 ~~~~i~~i~~sp~g~~l~~~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dg~~L~sgs~dG~I 540 (587)
+...+.+++|+|+|++|++++.++ .|.+||+.++.................+..++|+| +|++|++++.+|.+
T Consensus 256 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~ 335 (706)
T 2z3z_A 256 KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWN 335 (706)
T ss_dssp TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSC
T ss_pred CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCcc
Confidence 566789999999999999988775 89999998773322221111110011234589999 99999999999999
Q ss_pred EEEeCC-CCeeEEEEecCCCCEEE-EEEcCCCCCEE-EEEECCC
Q 007855 541 WFWDWK-SCKVFRTLKCHEGVCIG-CEWHPLEQSKV-ATCGWDG 581 (587)
Q Consensus 541 ~vwd~~-t~~~~~~l~~h~~~V~~-v~~sp~~~~~l-~s~g~DG 581 (587)
+||.+. ++..+..+..|...+.. ++|+| ++..| ++++.++
T Consensus 336 ~l~~~~~~~~~~~~l~~~~~~v~~~~~~sp-dg~~l~~~~~~~~ 378 (706)
T 2z3z_A 336 HLYLYDTTGRLIRQVTKGEWEVTNFAGFDP-KGTRLYFESTEAS 378 (706)
T ss_dssp EEEEEETTSCEEEECCCSSSCEEEEEEECT-TSSEEEEEESSSC
T ss_pred EEEEEECCCCEEEecCCCCeEEEeeeEEcC-CCCEEEEEecCCC
Confidence 999886 67778888888888877 79999 55555 4555554
No 146
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.87 E-value=2.4e-19 Score=184.24 Aligned_cols=264 Identities=9% Similarity=0.123 Sum_probs=180.8
Q ss_pred CCCeEEEEecCC-CCeeeE-EEcccCCceeeEEEecCCCeEEEEeC---CCeEEEEECCCCcE--EEE-eecCCcceEEE
Q 007855 317 MDTKVKIWDVFN-SGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY---DKNIKYWDTETGQV--IRT-FSTGKIPYVVK 388 (587)
Q Consensus 317 ~Dg~I~iWd~~~-~~~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~---Dg~I~vWd~~t~~~--i~~-~~~~~~~~~~~ 388 (587)
.++.|.+|.+.. +++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++.. +.. ......+..++
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a 92 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVA 92 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEE
T ss_pred CCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEE
Confidence 356788888743 344432 3345667788999999999 665554 68999999987763 333 22456677888
Q ss_pred EccCCCCCcEEEEEe-CCCcEEEEeCC-CC--cEEEEEcc---------CCCCeeEEEEecCCCEEEEEECCCCEEEEEC
Q 007855 389 LNPDDDKQNILLAGM-SDKKIVQWDMN-TK--EITQEYDQ---------HLGAVNTITFVDNNRRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~-~dg~I~iwD~~-t~--~~~~~~~~---------h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~ 455 (587)
+++++. +|++++ .++.|.+|++. .+ ..+..+.. +...+.+++|+|+++.+++...++.|.+|++
T Consensus 93 ~spdg~---~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 93 VDEARQ---LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp EETTTT---EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEE
T ss_pred ECCCCC---EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEE
Confidence 888653 455555 78999999996 33 23333322 1234889999999996666666889999999
Q ss_pred C-CCeEE--EEeecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCC--ceeecccceeccccc----ccceEEEEEc
Q 007855 456 G-IPVVI--KYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE--RFQLNKKKRFAGHIV----AGYACQVNFS 525 (587)
Q Consensus 456 ~-~~~~~--~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~--~~~~~~~~~~~~~~~----~~~i~~l~~s 525 (587)
. .+... ..+..........++|+|+|++|+++ ..++.|.+|++.. +. +.....+..... ...+..++|+
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i~~s 248 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGA-FTQLGIVKTIPADYTAHNGAAAIRLS 248 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTE-EEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCc-eEEeeeeeecCCCCCCCCcceeEEEC
Confidence 8 44322 22222334467789999999976664 5678999999864 32 111122211111 1347789999
Q ss_pred CCCCEEE-EEcCCCcEEEEeCC---CCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC-CCcEEEc
Q 007855 526 PDGRFVM-SGDGEGKCWFWDWK---SCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-DGLIKYW 586 (587)
Q Consensus 526 pdg~~L~-sgs~dG~I~vwd~~---t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-DG~I~iW 586 (587)
|+|++|+ +...++.|.+|++. ..+.+..+..+...+.+++|+| ++++|++++. ++.|.+|
T Consensus 249 pdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 249 HDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDP-TEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp TTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECC-CCCEEEEEEcCCCcEEEE
Confidence 9999874 55668999999997 3356667777777789999999 6677777765 5899999
No 147
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.86 E-value=2e-19 Score=184.38 Aligned_cols=243 Identities=12% Similarity=0.151 Sum_probs=192.5
Q ss_pred cCCceeeEEEecCCCeEEEEeC-------CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 339 HSKAVRDISFCNDGTKFLTASY-------DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~-------Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
....+..++|+|++++|++++. ++.|.+||..+++.+..+..+..+..+.+.+++. .+++++..++.|.+|
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~--~l~v~~~~~~~v~~~ 116 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQ--TLWFGNTVNSAVTAI 116 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTT--EEEEEETTTTEEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCC--EEEEEecCCCEEEEE
Confidence 3456889999999999888874 4689999999999999998877788888888653 466677778999999
Q ss_pred eCCCCcEEEEEccCCCC---------eeEEEEecCCCEEEEEE--CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCC
Q 007855 412 DMNTKEITQEYDQHLGA---------VNTITFVDNNRRFVTSS--DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN 480 (587)
Q Consensus 412 D~~t~~~~~~~~~h~~~---------I~~i~~sp~~~~l~s~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~ 480 (587)
|+.+++.+..+..+... +.++.|+|+++++++++ .++.|.+||+.+......+.. +...+.+++|+|+
T Consensus 117 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d 195 (353)
T 3vgz_A 117 DAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-TGKMSTGLALDSE 195 (353)
T ss_dssp ETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-CCTTCCCCEEETT
T ss_pred eCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-CCCccceEEECCC
Confidence 99999988887665432 78999999999887776 478899999999988877742 4445788999999
Q ss_pred CCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC-CCcEEEEeCCCCeeEEEEecCCC
Q 007855 481 TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFWDWKSCKVFRTLKCHEG 559 (587)
Q Consensus 481 g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-dG~I~vwd~~t~~~~~~l~~h~~ 559 (587)
+++|++++.++.|.+||+.++.......... ......+..++|+|+|++|++++. ++.|.+||+.+++.+..+..+..
T Consensus 196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~ 274 (353)
T 3vgz_A 196 GKRLYTTNADGELITIDTADNKILSRKKLLD-DGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES 274 (353)
T ss_dssp TTEEEEECTTSEEEEEETTTTEEEEEEECCC-SSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC
T ss_pred CCEEEEEcCCCeEEEEECCCCeEEEEEEcCC-CCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC
Confidence 9999999999999999998876554332211 111345677999999998776665 58999999999999888876543
Q ss_pred CEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 560 VCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++|+|++..++++...++.|.+||
T Consensus 275 --~~~~~s~dg~~l~v~~~~~~~v~~~d 300 (353)
T 3vgz_A 275 --LAVLFNPARNEAYVTHRQAGKVSVID 300 (353)
T ss_dssp --CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred --ceEEECCCCCEEEEEECCCCeEEEEE
Confidence 57999994443555555799999996
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=1.6e-19 Score=184.51 Aligned_cols=260 Identities=9% Similarity=0.064 Sum_probs=186.6
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccC-CceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEe
Q 007855 301 AIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS-KAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 301 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~ 378 (587)
.++++++ +.++++++.++.|.+||+ .+++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+.+++.+..+
T Consensus 4 g~~~~~~-~~~~v~~~~~~~v~~~d~-~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~ 81 (349)
T 1jmx_B 4 GPALKAG-HEYMIVTNYPNNLHVVDV-ASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA 81 (349)
T ss_dssp CCCCCTT-CEEEEEEETTTEEEEEET-TTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred cccccCC-CEEEEEeCCCCeEEEEEC-CCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence 3456776 889999999999999999 6788887776543 2578999999998665 4556899999999999988887
Q ss_pred ecCCc-------ceEEEEccCCCCCcEEEEEeCC------------CcEEEEeCCCCc---EEEEEccCCCCeeEEEEec
Q 007855 379 STGKI-------PYVVKLNPDDDKQNILLAGMSD------------KKIVQWDMNTKE---ITQEYDQHLGAVNTITFVD 436 (587)
Q Consensus 379 ~~~~~-------~~~~~~~~~~~~~~~l~sg~~d------------g~I~iwD~~t~~---~~~~~~~h~~~I~~i~~sp 436 (587)
..... +..+.+++++ .++++++.+ +.|.+||+.+++ .+..+. +...+.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~spdg---~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~ 157 (349)
T 1jmx_B 82 NLSSVPGEVGRSMYSFAISPDG---KEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD 157 (349)
T ss_dssp ESCCSTTEEEECSSCEEECTTS---SEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT
T ss_pred EcccccccccccccceEECCCC---CEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-CCCcccceeECC
Confidence 75442 5677888764 356666654 899999998853 334443 334689999999
Q ss_pred CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCc-----------------------ceeEEEEeCCCC-----------
Q 007855 437 NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH-----------------------SMPSISLHPNTN----------- 482 (587)
Q Consensus 437 ~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~-----------------------~i~~i~~sp~g~----------- 482 (587)
+++ +++++ +.|.+||+.++.....+...... ....+++++++.
T Consensus 158 dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 234 (349)
T 1jmx_B 158 DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYG 234 (349)
T ss_dssp TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEE
T ss_pred CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccccccee
Confidence 999 55554 34999999988877766432200 233455554432
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC-CCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCE
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVC 561 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V 561 (587)
++......+.+.+|++.. ....+..++|+| +|++|+++ ++.|.+||+.+++.+..+..+. .+
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~-~~ 297 (349)
T 1jmx_B 235 YLSVDLKTGKTHTQEFAD--------------LTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDH-TY 297 (349)
T ss_dssp EEEEETTTCCEEEEEEEE--------------CSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSS-CC
T ss_pred EEEEeccCCcEEeccccc--------------CCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCC-Cc
Confidence 111222334444444311 134566799999 99999988 8899999999999988887443 46
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 562 IGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 562 ~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++|+| ++.+|++++.++.|++||
T Consensus 298 ~~~~~s~-dg~~l~~~~~~~~v~v~d 322 (349)
T 1jmx_B 298 YCVAFDK-KGDKLYLGGTFNDLAVFN 322 (349)
T ss_dssp CEEEECS-SSSCEEEESBSSEEEEEE
T ss_pred cceEECC-CCCEEEEecCCCeEEEEe
Confidence 7899999 566677788899999997
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.85 E-value=8.4e-20 Score=181.16 Aligned_cols=239 Identities=13% Similarity=0.119 Sum_probs=176.4
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC-CeeeEEEccc-CCceeeEEEecCCCeEEEEeC--CCeEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS-GKCMRTYMGH-SKAVRDISFCNDGTKFLTASY--DKNIK 365 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-~~~~~~~~~h-~~~V~~l~fs~dg~~l~s~s~--Dg~I~ 365 (587)
..+..|...|.+++|+|+ +++|++++ ++.|++||+ .. ++....+..| ...|.+++|+|++++|++++. ++.+.
T Consensus 35 ~~~~~~~~~v~~~~~spd-g~~l~~~~-~~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 111 (297)
T 2ojh_A 35 RVVWQTPELFEAPNWSPD-GKYLLLNS-EGLLYRLSL-AGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSA 111 (297)
T ss_dssp EEEEEESSCCEEEEECTT-SSEEEEEE-TTEEEEEES-SSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCE
T ss_pred eeeccCCcceEeeEECCC-CCEEEEEc-CCeEEEEeC-CCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcce
Confidence 356678999999999999 88888877 789999999 56 6666666565 478999999999999999983 34445
Q ss_pred E--EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 366 Y--WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 366 v--Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
| |++.++. ...+........+.|++++. .+++++..++.+.+|++.. ......+..+...+.++.|+|+++.|+
T Consensus 112 l~~~~~~~~~-~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~ 188 (297)
T 2ojh_A 112 IYLLPSTGGT-PRLMTKNLPSYWHGWSPDGK--SFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIY 188 (297)
T ss_dssp EEEEETTCCC-CEECCSSSSEEEEEECTTSS--EEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEE
T ss_pred EEEEECCCCc-eEEeecCCCccceEECCCCC--EEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEE
Confidence 5 5555555 44454455566677777543 4555888899899988532 233456667888999999999999888
Q ss_pred EEE-CCCCEEEEECC-CCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----------CeEEEEEcCCceeecccce
Q 007855 443 TSS-DDKSLRVWEFG-IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----------NQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 443 s~s-~Dg~I~iwd~~-~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----------g~I~iwd~~~~~~~~~~~~ 509 (587)
+++ .++.+.||++. .......+. .+...+.+++|+|++++|++++.+ +.|.+||+.++.... ...
T Consensus 189 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~ 266 (297)
T 2ojh_A 189 FNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVET-LFD 266 (297)
T ss_dssp EEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEE-EEE
T ss_pred EEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCcee-eec
Confidence 776 58999999986 344444443 466788999999999999988866 569999998764321 222
Q ss_pred ecccccccceEEEEEcCCCCEEEEEcCCC
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEG 538 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs~dG 538 (587)
+.++ ...+..++|+|+|++|++++.+.
T Consensus 267 ~~~~--~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 267 LFGG--QGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEES--TTTSCSCCBCTTSSEEEEEEECC
T ss_pred cCCC--CcccccceECCCCCEEEEEEecc
Confidence 2233 34566789999999998877653
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=9.2e-20 Score=206.21 Aligned_cols=283 Identities=11% Similarity=0.043 Sum_probs=193.8
Q ss_pred ceEEEEcCCCC---CeEEEEEccCCCcEEEEEeCC---------CeEEEEecCCCCeeeEEEc---ccCCceeeEEEecC
Q 007855 287 RLVHTWSGHTK---GVSAIRFFPKYGHLILSAGMD---------TKVKIWDVFNSGKCMRTYM---GHSKAVRDISFCND 351 (587)
Q Consensus 287 ~~i~tl~gH~~---~V~~l~~sp~~g~~L~sgs~D---------g~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fs~d 351 (587)
++...+.+|.. .|.+++|+|+ |++|++++.+ +.|.+||+ .+++. ..+. +|...+..++||||
T Consensus 48 ~~~~~~~~~~~~~~~v~~~~~SpD-g~~l~~~~~~~~~~~~~~~~~i~~~d~-~~~~~-~~l~~~~~~~~~~~~~~~SPd 124 (723)
T 1xfd_A 48 TSTVLIEGKKIESLRAIRYEISPD-REYALFSYNVEPIYQHSYTGYYVLSKI-PHGDP-QSLDPPEVSNAKLQYAGWGPK 124 (723)
T ss_dssp CCEEEECTTTTTTTTCSEEEECTT-SSEEEEEESCCCCSSSCCCSEEEEEES-SSCCC-EECCCTTCCSCCCSBCCBCSS
T ss_pred cEEEEeccccccccccceEEECCC-CCEEEEEecCccceeecceeeEEEEEC-CCCce-EeccCCccccccccccEECCC
Confidence 34556667765 4999999999 8999988764 78899999 55554 3333 45556999999999
Q ss_pred CCeEEEEeCCCeEEEEECCCCcEEEEeecCCc-c------------------eEEEEccCCCCCcEEEEEeCCC------
Q 007855 352 GTKFLTASYDKNIKYWDTETGQVIRTFSTGKI-P------------------YVVKLNPDDDKQNILLAGMSDK------ 406 (587)
Q Consensus 352 g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~-~------------------~~~~~~~~~~~~~~l~sg~~dg------ 406 (587)
|++|++++. +.|.+||+.+++.......+.. . ..+.|+|++. .|++++.++
T Consensus 125 G~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~---~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 125 GQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT---RLAYAAINDSRVPIM 200 (723)
T ss_dssp TTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS---EEEEEEEECTTSCEE
T ss_pred CCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCC---EEEEEEECCCccceE
Confidence 999999886 8999999999887766544321 1 4678888653 566655432
Q ss_pred ----------------------------cEEEEeCCCCcEEEEEccC------CCCeeEEEEecCCCEEEEEECC----C
Q 007855 407 ----------------------------KIVQWDMNTKEITQEYDQH------LGAVNTITFVDNNRRFVTSSDD----K 448 (587)
Q Consensus 407 ----------------------------~I~iwD~~t~~~~~~~~~h------~~~I~~i~~sp~~~~l~s~s~D----g 448 (587)
.|++||+.+++....+..+ ...+.++.|+|+|++|++.+.. .
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~ 280 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVS 280 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEE
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeE
Confidence 7999999988865666554 5678999999999988776533 5
Q ss_pred CEEEEECCCCeEEEEeecCCCcce----eEEEEeCCCCEEEE--EECCC------eEEEEE-cCCceeecccceeccccc
Q 007855 449 SLRVWEFGIPVVIKYISEPHMHSM----PSISLHPNTNWLAA--QSLDN------QILIYS-TRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 449 ~I~iwd~~~~~~~~~~~~~~~~~i----~~i~~sp~g~~l~~--~s~dg------~I~iwd-~~~~~~~~~~~~~~~~~~ 515 (587)
.|++||+.++.....+...+...+ ..++|+|+|+.|+. +..++ .|.+|| ..++... ....+...
T Consensus 281 ~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-~~~~l~~~-- 357 (723)
T 1xfd_A 281 ILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND-NIQSITSG-- 357 (723)
T ss_dssp EEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-CCCBSCCS--
T ss_pred EEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-ceeEeecC--
Confidence 799999998877665543333333 37899999997765 44566 566677 3333200 01112211
Q ss_pred ccceE-EEEEcCCCCEEEEEcCC---CcEEEEeCCCC--eeEEEEec---CCCCEEEEEEcCCCCCEEEEEEC
Q 007855 516 AGYAC-QVNFSPDGRFVMSGDGE---GKCWFWDWKSC--KVFRTLKC---HEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 516 ~~~i~-~l~~spdg~~L~sgs~d---G~I~vwd~~t~--~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
...+. .++|+|+|++|+..+.+ +.+.||++... .....+.. |...+..++|+|++..++++++.
T Consensus 358 ~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~ 430 (723)
T 1xfd_A 358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEG 430 (723)
T ss_dssp SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCS
T ss_pred CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCEEEEEccC
Confidence 12233 36899999999765554 78999988643 23334443 56778899999954434444443
No 151
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=1.9e-18 Score=178.55 Aligned_cols=271 Identities=8% Similarity=0.105 Sum_probs=179.9
Q ss_pred CcEEEEEe----CCCeEEEEecCC-CCeeeEEEcccCCceeeEEEecCCCeEEEEeCC----CeEEEEECCC--CcE--E
Q 007855 309 GHLILSAG----MDTKVKIWDVFN-SGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTET--GQV--I 375 (587)
Q Consensus 309 g~~L~sgs----~Dg~I~iWd~~~-~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D----g~I~vWd~~t--~~~--i 375 (587)
..+++.|+ .++.|.+|.+.. +++.......+...+..++|+|+|++|++++.+ +.|.+|++.. ++. +
T Consensus 13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~ 92 (361)
T 3scy_A 13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL 92 (361)
T ss_dssp EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence 34555553 467899998732 343322222277888999999999999999886 7999998865 443 3
Q ss_pred EEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE----EE--c--------cCCCCeeEEEEecCCCE
Q 007855 376 RTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ----EY--D--------QHLGAVNTITFVDNNRR 440 (587)
Q Consensus 376 ~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~----~~--~--------~h~~~I~~i~~sp~~~~ 440 (587)
.... ....+..+.+ +...++++...++.|.+|++.....+. .+ . .+...+.+++|+|++++
T Consensus 93 ~~~~~~~~~p~~~~~----dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 93 NTQKTMGADPCYLTT----NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp EEEECSSSCEEEEEE----CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred eEeccCCCCcEEEEE----CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence 3333 2333444444 233455555578999999997543221 11 1 12234688999999997
Q ss_pred EEEEEC-CCCEEEEECCCCeE------E------EEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecc
Q 007855 441 FVTSSD-DKSLRVWEFGIPVV------I------KYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNK 506 (587)
Q Consensus 441 l~s~s~-Dg~I~iwd~~~~~~------~------~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~ 506 (587)
|++++. ++.|.+|++..... + .............++|+|+|++|++++ .++.|.+|++.++... .
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~-~ 247 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLD-E 247 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEE-E
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceE-E
Confidence 766654 78999999875331 1 223334555678999999999888877 6899999999765321 1
Q ss_pred cceeccc-ccccceEEEEEcCCCCEEEEEcC--CCcEEEEeCC--CCe--eEEEEecCCCCEEEEEEcCCCCCEEEEEE-
Q 007855 507 KKRFAGH-IVAGYACQVNFSPDGRFVMSGDG--EGKCWFWDWK--SCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCG- 578 (587)
Q Consensus 507 ~~~~~~~-~~~~~i~~l~~spdg~~L~sgs~--dG~I~vwd~~--t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g- 578 (587)
...+... ........++|+|+|++|+++.. ++.|.+|++. +++ .+..+.. ...+.+++|+| ++++|++++
T Consensus 248 ~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~sp-dg~~l~~~~~ 325 (361)
T 3scy_A 248 IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITP-NGKYLLVACR 325 (361)
T ss_dssp EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECT-TSCEEEEEET
T ss_pred eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECC-CCCEEEEEEC
Confidence 1111111 11123467999999999876665 4899999995 444 4555554 55678999999 667777776
Q ss_pred CCCcEEEc
Q 007855 579 WDGLIKYW 586 (587)
Q Consensus 579 ~DG~I~iW 586 (587)
.++.|.+|
T Consensus 326 ~~~~v~v~ 333 (361)
T 3scy_A 326 DTNVIQIF 333 (361)
T ss_dssp TTTEEEEE
T ss_pred CCCCEEEE
Confidence 67899996
No 152
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.85 E-value=2.1e-19 Score=212.12 Aligned_cols=275 Identities=13% Similarity=0.003 Sum_probs=211.7
Q ss_pred CCCCeEEEEEc-cCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC-ceeeEEEecCCCeEEEEeCCCeEE-EEECCC
Q 007855 295 HTKGVSAIRFF-PKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTASYDKNIK-YWDTET 371 (587)
Q Consensus 295 H~~~V~~l~~s-p~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fs~dg~~l~s~s~Dg~I~-vWd~~t 371 (587)
|...|.+++|+ |+ |++|++++ ++.|.+|++ ..+.. ..+..|.. .+.+++|+ +|+.|++++.+..|. +|++.+
T Consensus 294 ~~~~v~~~~~S~pd-G~~la~~~-~~~i~~~~~-~~~~~-~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~ 368 (1045)
T 1k32_A 294 SIPSKFAEDFSPLD-GDLIAFVS-RGQAFIQDV-SGTYV-LKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT 368 (1045)
T ss_dssp ECGGGGEEEEEECG-GGCEEEEE-TTEEEEECT-TSSBE-EECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT
T ss_pred cccccceeeecCCC-CCEEEEEE-cCEEEEEcC-CCCce-EEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC
Confidence 45579999999 99 88888877 789999998 45543 44677877 89999999 999999999888898 999988
Q ss_pred CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC---
Q 007855 372 GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK--- 448 (587)
Q Consensus 372 ~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg--- 448 (587)
++.............+.|+|++ ..|++++.++.|++||+.+++....+..|...+.+++|+|++++|++++.++
T Consensus 369 ~~~~~l~~~~~~~~~~~~SpDG---~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~ 445 (1045)
T 1k32_A 369 GKAEKFEENLGNVFAMGVDRNG---KFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGE 445 (1045)
T ss_dssp CCEEECCCCCCSEEEEEECTTS---SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSST
T ss_pred CCceEecCCccceeeeEECCCC---CEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCcccc
Confidence 8765444223445677787754 5788999999999999999998888878999999999999999999887654
Q ss_pred -------CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee-------e-----c----
Q 007855 449 -------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ-------L-----N---- 505 (587)
Q Consensus 449 -------~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~-------~-----~---- 505 (587)
.|++||+.++. ...+. .+...+..++|+|+|++|++++.++...+|+...... + .
T Consensus 446 ~~~~~~~~i~l~d~~~g~-~~~l~-~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (1045)
T 1k32_A 446 TDGYVMQAIHVYDMEGRK-IFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSP 523 (1045)
T ss_dssp TCSCCEEEEEEEETTTTE-EEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCC
T ss_pred ccCCCCCeEEEEECCCCc-EEEee-CCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCC
Confidence 89999999887 44443 4667788999999999999999888777776432211 0 0
Q ss_pred ------------------------ccceecccccccceEEEEEcCCCCEEEE-------------EcCCCcEEEEeCCCC
Q 007855 506 ------------------------KKKRFAGHIVAGYACQVNFSPDGRFVMS-------------GDGEGKCWFWDWKSC 548 (587)
Q Consensus 506 ------------------------~~~~~~~~~~~~~i~~l~~spdg~~L~s-------------gs~dG~I~vwd~~t~ 548 (587)
....+.. ..+.+..++++|+|.++++ .+....|++||+.++
T Consensus 524 ~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~--~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~ 601 (1045)
T 1k32_A 524 NPTKLVPRSMTSEAGEYDLNDMYKRSSPINV--DPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR 601 (1045)
T ss_dssp CGGGCCCGGGSCCCCCCCCTTGGGGCEECSC--CCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTC
T ss_pred CccccCcCccccccccccccCHhHceEEcCC--CCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCC
Confidence 0001111 1355778999999987775 123557899999888
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 549 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 549 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+..... ..+.+++|+| ++.+|++++.+ .|++||
T Consensus 602 ~~~~l~----~~v~~~~~S~-DG~~l~~~~~~-~i~~~d 634 (1045)
T 1k32_A 602 KVTEVK----NNLTDLRLSA-DRKTVMVRKDD-GKIYTF 634 (1045)
T ss_dssp CEEEEE----EEEEEEEECT-TSCEEEEEETT-SCEEEE
T ss_pred cEEEee----cCcceEEECC-CCCEEEEEcCC-cEEEEe
Confidence 754333 5688999999 77788888866 799986
No 153
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.85 E-value=1.7e-19 Score=187.88 Aligned_cols=292 Identities=11% Similarity=0.019 Sum_probs=197.5
Q ss_pred ceEEEEcCCCCCeEE-----EEEccCCCcEEEEEeC-CC--eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE
Q 007855 287 RLVHTWSGHTKGVSA-----IRFFPKYGHLILSAGM-DT--KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA 358 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~-----l~~sp~~g~~L~sgs~-Dg--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~ 358 (587)
..+..+..|...+.. .+|+|+ |++|+.++. ++ .|.+||+ .+++......++...+..+.|+|+|++|+.+
T Consensus 21 ~~~~~lt~~~~~~~~~~~~~~~~SpD-g~~l~~~~~~~g~~~l~~~d~-~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~ 98 (388)
T 3pe7_A 21 AQVTRLTPPDVTCHRNYFYQKCFTRD-GSKLLFGGAFDGPWNYYLLDL-NTQVATQLTEGRGDNTFGGFLSPDDDALFYV 98 (388)
T ss_dssp CEEEECSCTTSCEECCCTTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTCEEEECCCSSCBCSSSCEECTTSSEEEEE
T ss_pred cceEEecCCcccccchhhcCccCCCC-CCEEEEEEcCCCCceEEEEeC-CCCceEEeeeCCCCCccceEEcCCCCEEEEE
Confidence 455677777766666 889999 777777776 67 4888888 6777776666777677788999999999999
Q ss_pred eCCCeEEEEECCCCcEEEEeecCCcce-EEEEccCCCCCcEEEEE----------------------eCCCcEEEEeCCC
Q 007855 359 SYDKNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDDKQNILLAG----------------------MSDKKIVQWDMNT 415 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~~~~~l~sg----------------------~~dg~I~iwD~~t 415 (587)
+.++.|.+||+.+++....+..+.... ...+....+ +.+++.. ..+..|.+||+.+
T Consensus 99 ~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~d-g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~ 177 (388)
T 3pe7_A 99 KDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSD-CTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKT 177 (388)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTT-SSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTT
T ss_pred eCCCeEEEEECCCCcceeeeechhhcccccceeECCC-CCeeccccccCcccccccccchhhhhhccCCcceEEEEECCC
Confidence 999999999999998776665443322 223322222 2344422 2346899999999
Q ss_pred CcEEEEEccCCCCeeEEEEec-CCCEEEEEECC------CCEEEEECCCCeEEEEeecCCC-cceeEEEEeCCCCEEEEE
Q 007855 416 KEITQEYDQHLGAVNTITFVD-NNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPHM-HSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 416 ~~~~~~~~~h~~~I~~i~~sp-~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~~-~~i~~i~~sp~g~~l~~~ 487 (587)
++.... ..+...+..+.|+| +++.|+.++.+ ..|.++|+...... .+..... ..+..++|+|+|+.|+..
T Consensus 178 g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~ 255 (388)
T 3pe7_A 178 GESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYV 255 (388)
T ss_dssp CCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEE
T ss_pred CceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEE
Confidence 875544 35667899999999 99999888764 37888887765443 3332222 357788999999977665
Q ss_pred ECC-C----eEEEEEcCCceeecccceecccccc-cceEEEEEcCCCCEEEEE---------cCCCcEEEEeCCCCeeEE
Q 007855 488 SLD-N----QILIYSTRERFQLNKKKRFAGHIVA-GYACQVNFSPDGRFVMSG---------DGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 488 s~d-g----~I~iwd~~~~~~~~~~~~~~~~~~~-~~i~~l~~spdg~~L~sg---------s~dG~I~vwd~~t~~~~~ 552 (587)
+.. + .|++||+.++.... +..+.++... .....+.|+|||++|+.. ..+..|++||+.+++. .
T Consensus 256 ~~~~~~~~~~l~~~d~~~g~~~~-l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~ 333 (388)
T 3pe7_A 256 SYLKGSPDRFIYSADPETLENRQ-LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ-H 333 (388)
T ss_dssp EEETTCCCEEEEEECTTTCCEEE-EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE-E
T ss_pred ecCCCCCcceEEEEecCCCceEE-EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce-E
Confidence 432 2 39999998765321 2222221000 001113799999988754 4566899999998875 4
Q ss_pred EEecCCC-----------CEEEEEEcCCCCCEEE-EEECCCcEEEc
Q 007855 553 TLKCHEG-----------VCIGCEWHPLEQSKVA-TCGWDGLIKYW 586 (587)
Q Consensus 553 ~l~~h~~-----------~V~~v~~sp~~~~~l~-s~g~DG~I~iW 586 (587)
.+..|.. .+.+++|+| +++.|+ ++..+|...||
T Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~~~~sp-Dg~~l~~~s~~~g~~~l~ 378 (388)
T 3pe7_A 334 RVARHDTSWKVFEGDRQVTHPHPSFTP-DDKQILFTSDVHGKPALY 378 (388)
T ss_dssp EEEECCCCCCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEE
T ss_pred EeccccCcccccccccccCCCCccCCC-CCCEEEEEecCCCceeEE
Confidence 4555655 578899999 555555 45567877776
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.4e-18 Score=178.35 Aligned_cols=252 Identities=10% Similarity=0.165 Sum_probs=173.9
Q ss_pred cCCCCCeEEEEEccCCCcEEEEEeC--CCeEEEEecCCCCe--eeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEE
Q 007855 293 SGHTKGVSAIRFFPKYGHLILSAGM--DTKVKIWDVFNSGK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYW 367 (587)
Q Consensus 293 ~gH~~~V~~l~~sp~~g~~L~sgs~--Dg~I~iWd~~~~~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vW 367 (587)
..+...+..|+|+|+ +++++++.. ++.|.+|++ ..+. .+..+..+...+..++|+|+|++|++++ .++.|.+|
T Consensus 36 ~~~~~~p~~~a~spd-g~l~~~~~~~~~~~v~~~~~-~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~ 113 (347)
T 3hfq_A 36 LAATQNPTYLALSAK-DCLYSVDKEDDEGGIAAWQI-DGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVM 113 (347)
T ss_dssp EEECSCCCCEEECTT-CEEEEEEEETTEEEEEEEEE-ETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEE
T ss_pred eeccCCcceEEEccC-CeEEEEEecCCCceEEEEEe-cCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 345577889999999 774444432 689999999 5554 4455566788899999999999999888 67999999
Q ss_pred ECC-CC--cEEEEeecCC----------cceEEEEccCCCCCcEEEEEeCCCcEEEEeCC-CCcEEE--EEccC-CCCee
Q 007855 368 DTE-TG--QVIRTFSTGK----------IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-TKEITQ--EYDQH-LGAVN 430 (587)
Q Consensus 368 d~~-t~--~~i~~~~~~~----------~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-t~~~~~--~~~~h-~~~I~ 430 (587)
++. .+ ..+..+.... .+..+.+.|++. ++++...++.|.+|++. ++++.. .+..+ ...+.
T Consensus 114 ~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~---l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~ 190 (347)
T 3hfq_A 114 KIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR---LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPR 190 (347)
T ss_dssp EECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC---EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEE
T ss_pred EeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc---EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCc
Confidence 996 33 3333333211 244677777543 77777778999999998 554332 22222 34678
Q ss_pred EEEEecCCCEEEEE-ECCCCEEEEECCC--CeE--EEEeecCC-----CcceeEEEEeCCCCEEE-EEECCCeEEEEEcC
Q 007855 431 TITFVDNNRRFVTS-SDDKSLRVWEFGI--PVV--IKYISEPH-----MHSMPSISLHPNTNWLA-AQSLDNQILIYSTR 499 (587)
Q Consensus 431 ~i~~sp~~~~l~s~-s~Dg~I~iwd~~~--~~~--~~~~~~~~-----~~~i~~i~~sp~g~~l~-~~s~dg~I~iwd~~ 499 (587)
.++|+|++++++++ ..++.|.+|++.. +.. +..+.... ...+..++|+|+|++|+ +...++.|.+|++.
T Consensus 191 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~ 270 (347)
T 3hfq_A 191 HLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVT 270 (347)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEEC
T ss_pred eEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEEC
Confidence 89999999966664 5678999999874 432 22222111 14578899999999874 55668999999986
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcC-CCcEEEE--eCCCCeeE
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EGKCWFW--DWKSCKVF 551 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-dG~I~vw--d~~t~~~~ 551 (587)
....+.....+..+ ...+..++|+|+|++|++++. ++.|.+| |..++++.
T Consensus 271 ~~g~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~ 323 (347)
T 3hfq_A 271 ADGHLTLIQQISTE--GDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLS 323 (347)
T ss_dssp GGGCEEEEEEEECS--SSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred CCCcEEEeEEEecC--CCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEE
Confidence 33222222333322 234667999999999888765 4899999 55667654
No 155
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.83 E-value=6.3e-18 Score=174.65 Aligned_cols=264 Identities=11% Similarity=0.137 Sum_probs=180.3
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCC----CeEEEEecCCC-Ce--eeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMD----TKVKIWDVFNS-GK--CMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKY 366 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~D----g~I~iWd~~~~-~~--~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~v 366 (587)
|...+..|+|+|+ +++|++++.+ +.|.+|++... +. .+.....+......+++ ++++|++++ .++.|.+
T Consensus 48 ~~~~p~~l~~spd-g~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~ 124 (361)
T 3scy_A 48 EVANPSYLIPSAD-GKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITV 124 (361)
T ss_dssp ECSCCCSEEECTT-SSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEE
T ss_pred cCCCCceEEECCC-CCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEE
Confidence 7778899999999 8888888875 89999998443 43 33344445667778888 888888776 5789999
Q ss_pred EECCCCcEEEE----eec-C----------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-------E------
Q 007855 367 WDTETGQVIRT----FST-G----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-------I------ 418 (587)
Q Consensus 367 Wd~~t~~~i~~----~~~-~----------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-------~------ 418 (587)
|++.....+.. +.. + ..+..+.++|++. .+++++..++.|.+|++.... +
T Consensus 125 ~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~ 202 (361)
T 3scy_A 125 FPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGK--YLLADDLGTDQIHKFNINPNANADNKEKFLTKGTP 202 (361)
T ss_dssp EEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEE
T ss_pred EEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCC--EEEEEeCCCCEEEEEEEcCCCCcccccceeecccc
Confidence 99975432211 111 1 1125677877543 455666668999999887543 2
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCeE--EEEee--cCCCcceeEEEEeCCCCEEEEEECC--C
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPVV--IKYIS--EPHMHSMPSISLHPNTNWLAAQSLD--N 491 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~--~~~~~--~~~~~~i~~i~~sp~g~~l~~~s~d--g 491 (587)
......+...+..++|+|+++++++++ .++.|.+|++..+.. +..+. ..+......++|+|+|++|+++..+ +
T Consensus 203 ~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~ 282 (361)
T 3scy_A 203 EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKAD 282 (361)
T ss_dssp EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSC
T ss_pred cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCC
Confidence 122233456688999999999888777 689999999986644 22222 1223446799999999999777665 8
Q ss_pred eEEEEEcC--CceeecccceecccccccceEEEEEcCCCCEEEEEc-CCCcEEEE--eCCCCeeEEEE-ecCCCCEEEEE
Q 007855 492 QILIYSTR--ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFW--DWKSCKVFRTL-KCHEGVCIGCE 565 (587)
Q Consensus 492 ~I~iwd~~--~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vw--d~~t~~~~~~l-~~h~~~V~~v~ 565 (587)
.|.+|++. ++. +.....+.. ...+..++|+|+|++|++++ .++.|.+| |..++++.... ..+...+.|+.
T Consensus 283 ~i~v~~~~~~~g~-~~~~~~~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~ 358 (361)
T 3scy_A 283 GVAIFKVDETNGT-LTKVGYQLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLK 358 (361)
T ss_dssp EEEEEEECTTTCC-EEEEEEEEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEE
T ss_pred EEEEEEEcCCCCc-EEEeeEecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEE
Confidence 99999985 222 211222221 23456799999999988877 67889996 45567665443 22445788988
Q ss_pred Ec
Q 007855 566 WH 567 (587)
Q Consensus 566 ~s 567 (587)
|.
T Consensus 359 ~~ 360 (361)
T 3scy_A 359 FV 360 (361)
T ss_dssp EE
T ss_pred Ec
Confidence 86
No 156
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.82 E-value=5e-18 Score=176.27 Aligned_cols=274 Identities=11% Similarity=0.114 Sum_probs=181.1
Q ss_pred EEEEEeCC--CeEEEEecC-CCCeeeE--EEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEEECC-CCcEEEEeec--C
Q 007855 311 LILSAGMD--TKVKIWDVF-NSGKCMR--TYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE-TGQVIRTFST--G 381 (587)
Q Consensus 311 ~L~sgs~D--g~I~iWd~~-~~~~~~~--~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~-t~~~i~~~~~--~ 381 (587)
.|+.|+.. +.|.+|++. .++.+.. ... .....+..++|+|+|++|++++.+ .|.+|++. +++....... .
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~ 82 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIG 82 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECC
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecC
Confidence 34555542 568887763 2344322 111 234568899999999999999988 99999997 7876544331 1
Q ss_pred CcceEEEEccCCCCCc-EEEEEe-------------CCCcEEEEeCC-CCcEEEEEc----cCCCCeeEEEEecCCCEEE
Q 007855 382 KIPYVVKLNPDDDKQN-ILLAGM-------------SDKKIVQWDMN-TKEITQEYD----QHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 382 ~~~~~~~~~~~~~~~~-~l~sg~-------------~dg~I~iwD~~-t~~~~~~~~----~h~~~I~~i~~sp~~~~l~ 442 (587)
..+..+.++|++ .. +++++. .++.+.+|++. .++....+. .+...+.+++|+|+|++|+
T Consensus 83 g~~~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~ 160 (365)
T 1jof_A 83 GHPRANDADTNT--RAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLY 160 (365)
T ss_dssp SSGGGGCTTSCC--EEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEE
T ss_pred CCCccEEECCCC--CEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEE
Confidence 234445555543 22 344442 68999999997 466544433 2557899999999999888
Q ss_pred EEEC-CCCEEEEECC-CCeEE--EEeecC-CCcceeEEEEeCCCCEEEEEEC-CCeEEEEEcC--Cceee---cccceec
Q 007855 443 TSSD-DKSLRVWEFG-IPVVI--KYISEP-HMHSMPSISLHPNTNWLAAQSL-DNQILIYSTR--ERFQL---NKKKRFA 511 (587)
Q Consensus 443 s~s~-Dg~I~iwd~~-~~~~~--~~~~~~-~~~~i~~i~~sp~g~~l~~~s~-dg~I~iwd~~--~~~~~---~~~~~~~ 511 (587)
++.. ++.|++|++. ++... ..+..+ +...+..++|+|+|++|++++. ++.|.+|++. ++... .....+.
T Consensus 161 ~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~ 240 (365)
T 1jof_A 161 SADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIP 240 (365)
T ss_dssp EEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSC
T ss_pred EEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCC
Confidence 7764 6789999998 56543 223222 3566889999999999988775 6899999865 33221 1111121
Q ss_pred cccc--cc------ceEEEE-EcCCCCEEEEEcCCC------cEEEEeCC-CCeeEE---EEecCCCCEEEEEEcCC--C
Q 007855 512 GHIV--AG------YACQVN-FSPDGRFVMSGDGEG------KCWFWDWK-SCKVFR---TLKCHEGVCIGCEWHPL--E 570 (587)
Q Consensus 512 ~~~~--~~------~i~~l~-~spdg~~L~sgs~dG------~I~vwd~~-t~~~~~---~l~~h~~~V~~v~~sp~--~ 570 (587)
.... .. .+..++ |+|||++|++++... .|.+|++. ++++.. .+..+...+..++|+|. +
T Consensus 241 ~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~d 320 (365)
T 1jof_A 241 PGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWS 320 (365)
T ss_dssp TTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTC
T ss_pred CCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcC
Confidence 1100 11 467899 999999988765432 89999996 666543 23445555678899994 4
Q ss_pred CCEEEEEEC-CCcEEEcC
Q 007855 571 QSKVATCGW-DGLIKYWD 587 (587)
Q Consensus 571 ~~~l~s~g~-DG~I~iWD 587 (587)
+++|++++. ++.|.||+
T Consensus 321 g~~l~v~~~~~~~v~v~~ 338 (365)
T 1jof_A 321 DEWMAITDDQEGWLEIYR 338 (365)
T ss_dssp TTEEEEECSSSCEEEEEE
T ss_pred CCEEEEEEcCCCeEEEEE
Confidence 667888776 48999995
No 157
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.81 E-value=6.6e-19 Score=199.31 Aligned_cols=276 Identities=9% Similarity=0.037 Sum_probs=189.7
Q ss_pred EEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC---ceeeEEEecCCCeEEEEeC---------CCeEEEEE
Q 007855 301 AIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK---AVRDISFCNDGTKFLTASY---------DKNIKYWD 368 (587)
Q Consensus 301 ~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~---~V~~l~fs~dg~~l~s~s~---------Dg~I~vWd 368 (587)
+++|+|+ +.+++++ .|++|++||+ .+++....+.+|.. .|.+++|||||++|++++. ++.|++||
T Consensus 20 ~~~~s~d-g~~~~~~-~d~~i~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d 96 (719)
T 1z68_A 20 FPNWISG-QEYLHQS-ADNNIVLYNI-ETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD 96 (719)
T ss_dssp CCEESSS-SEEEEEC-TTSCEEEEES-SSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred ccEECCC-CeEEEEc-CCCCEEEEEc-CCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence 6789999 6655554 6999999999 67777777766644 4999999999999998876 78999999
Q ss_pred CCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-ccCCCCe-----------------e
Q 007855 369 TETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAV-----------------N 430 (587)
Q Consensus 369 ~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-~~h~~~I-----------------~ 430 (587)
+.+++.+...........+.|+|++. .|+.+ .++.|++||+.+++..+.. .++...| .
T Consensus 97 ~~~g~~~~~~~l~~~~~~~~~SPDG~---~la~~-~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 97 LSNGEFVRGNELPRPIQYLCWSPVGS---KLAYV-YQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp TTTTEECCSSCCCSSBCCEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred CCCCccccceecCcccccceECCCCC---EEEEE-ECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 99998732122234466788998764 35555 4789999999988765432 2222222 5
Q ss_pred EEEEecCCCEEEEEECCC----------------------------------CEEEEECCCCeEE--EEee-----cCCC
Q 007855 431 TITFVDNNRRFVTSSDDK----------------------------------SLRVWEFGIPVVI--KYIS-----EPHM 469 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg----------------------------------~I~iwd~~~~~~~--~~~~-----~~~~ 469 (587)
++.|+|+|++|++++.|. .|++||+.++... ..+. ..+.
T Consensus 173 ~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~ 252 (719)
T 1z68_A 173 ALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSD 252 (719)
T ss_dssp CEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSC
T ss_pred cEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCc
Confidence 899999999999988652 7889999876542 1221 1366
Q ss_pred cceeEEEEeCCCCEEEEEECC----CeEEEEE----cCCceeecccc-eecccccccceE-----EEEEcCCCCEEEE--
Q 007855 470 HSMPSISLHPNTNWLAAQSLD----NQILIYS----TRERFQLNKKK-RFAGHIVAGYAC-----QVNFSPDGRFVMS-- 533 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~d----g~I~iwd----~~~~~~~~~~~-~~~~~~~~~~i~-----~l~~spdg~~L~s-- 533 (587)
..+..++|+|+++++++.... ..|.+|| +.++....... ...++ ...+. .+.|+|||+.|+.
T Consensus 253 ~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~~l~~~~ 330 (719)
T 1z68_A 253 YYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAISYYKIF 330 (719)
T ss_dssp EEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred ceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCCeEEEEE
Confidence 778999999998777664433 2488899 76665433221 00122 23333 5789999996544
Q ss_pred EcCCC--cEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC----CCcEEEcC
Q 007855 534 GDGEG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW----DGLIKYWD 587 (587)
Q Consensus 534 gs~dG--~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~----DG~I~iWD 587 (587)
...+| .|++||+.+++ ...+..+...+..+.++ +++.+++++.. ++.++||.
T Consensus 331 ~~~~g~~~l~~~~~~~~~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~ 388 (719)
T 1z68_A 331 SDKDGYKHIHYIKDTVEN-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR 388 (719)
T ss_dssp ECTTSCEEEEEESSCSTT-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred EccCCceEEEEEECCCCc-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence 44555 57778887766 45566566668787777 45544444443 47888873
No 158
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.79 E-value=5.2e-17 Score=165.77 Aligned_cols=279 Identities=11% Similarity=0.054 Sum_probs=184.7
Q ss_pred cccceEeecccccccceeeeeCCCCcccCCCcccCCCceEEEEcCCC-CCeEEEEEccCCCc-EEEEEeCCCeEEEEecC
Q 007855 250 EDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHT-KGVSAIRFFPKYGH-LILSAGMDTKVKIWDVF 327 (587)
Q Consensus 250 ~~~~~~~~~~~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~-~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~ 327 (587)
.....+......+.+++.|-.. ..+++.++..+. ..+..++|+|+ ++ +++++..++.|.+||+
T Consensus 8 ~~~~~~~v~~~~~~~v~~~d~~-------------~~~~~~~~~~~~~~~~~~~~~s~d-g~~~~v~~~~~~~i~~~d~- 72 (349)
T 1jmx_B 8 KAGHEYMIVTNYPNNLHVVDVA-------------SDTVYKSCVMPDKFGPGTAMMAPD-NRTAYVLNNHYGDIYGIDL- 72 (349)
T ss_dssp CTTCEEEEEEETTTEEEEEETT-------------TTEEEEEEECSSCCSSCEEEECTT-SSEEEEEETTTTEEEEEET-
T ss_pred cCCCEEEEEeCCCCeEEEEECC-------------CCcEEEEEecCCCCCCceeEECCC-CCEEEEEeCCCCcEEEEeC-
Confidence 3445555666666666665332 234455565443 36889999999 65 5566678999999999
Q ss_pred CCCeeeEEEccc------CCceeeEEEecCCCeEEEEeCC------------CeEEEEECCCCc---EEEEeecCCcceE
Q 007855 328 NSGKCMRTYMGH------SKAVRDISFCNDGTKFLTASYD------------KNIKYWDTETGQ---VIRTFSTGKIPYV 386 (587)
Q Consensus 328 ~~~~~~~~~~~h------~~~V~~l~fs~dg~~l~s~s~D------------g~I~vWd~~t~~---~i~~~~~~~~~~~ 386 (587)
.+++.+..+..+ ...+.+++|+|+|++|++++.+ +.|.+||+.+++ .+..+.....+.+
T Consensus 73 ~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 152 (349)
T 1jmx_B 73 DTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYL 152 (349)
T ss_dssp TTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCC
T ss_pred CCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccc
Confidence 677777666533 2348899999999999998865 899999998843 3445555555667
Q ss_pred EEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC------------------------CeeEEEEecCCCEEE
Q 007855 387 VKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG------------------------AVNTITFVDNNRRFV 442 (587)
Q Consensus 387 ~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~------------------------~I~~i~~sp~~~~l~ 442 (587)
+.+.+++ . +++++ +.|.+||+.+++.+..+..+.. ...++++++++....
T Consensus 153 ~~~s~dg---~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 226 (349)
T 1jmx_B 153 MRAADDG---S-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDP 226 (349)
T ss_dssp EEECTTS---C-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------
T ss_pred eeECCCC---c-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCc
Confidence 7787754 3 44443 4599999999988877754320 234456654432110
Q ss_pred EEE-CCCCEEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 443 TSS-DDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 443 s~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
... ....+..++..++.....-.......+..++++| ++++|+++ ++.|.+||+.++..+..... ...+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~------~~~~~ 298 (349)
T 1jmx_B 227 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL------DHTYY 298 (349)
T ss_dssp CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC------SSCCC
T ss_pred cccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC------CCCcc
Confidence 000 0001122344333322211122455788999999 99999888 88999999988765433221 12345
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 557 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h 557 (587)
.++|+|+|++|++++.++.|.+||+.+++.+..+..+
T Consensus 299 ~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 299 CVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLP 335 (349)
T ss_dssp EEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEECS
T ss_pred ceEECCCCCEEEEecCCCeEEEEeccccceeeeeecC
Confidence 7999999999998888999999999999999888765
No 159
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.79 E-value=4.1e-18 Score=181.39 Aligned_cols=201 Identities=12% Similarity=0.153 Sum_probs=151.5
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC-------C--eeeE-----EEcccCCceeeEEEecCCCeEE----E
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS-------G--KCMR-----TYMGHSKAVRDISFCNDGTKFL----T 357 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~-------~--~~~~-----~~~~h~~~V~~l~fs~dg~~l~----s 357 (587)
...++.|+++++ +.+|++++.++ |+||+.... . ..+. ....|...|.+++|+++|++|+ +
T Consensus 36 ~~~~n~lavs~~-~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNK-YGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETT-TTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecC-CCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEec
Confidence 345889999998 77899999888 888875210 0 0111 1123667899999999999999 7
Q ss_pred EeCCCeEEEEECCCC--------cE---EEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC
Q 007855 358 ASYDKNIKYWDTETG--------QV---IRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH 425 (587)
Q Consensus 358 ~s~Dg~I~vWd~~t~--------~~---i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h 425 (587)
++.|+.|+|||+.++ +. +..+. +...+.+++|+|. .+++|++++.||.|++||++++..+.....|
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~--~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~ 191 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPT--VPSMVAVCLADGSIAVLQVTETVKVCATLPS 191 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSS--CTTEEEEEETTSCEEEEEESSSEEEEEEECG
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCC--CCCEEEEEECCCeEEEEEcCCCcceeeccCC
Confidence 888999999998765 22 22222 2345667777775 3478999999999999999999777777789
Q ss_pred CCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecC------CCcceeEEEEeCCCCEEEEEE-CCC------e
Q 007855 426 LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------HMHSMPSISLHPNTNWLAAQS-LDN------Q 492 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~------~~~~i~~i~~sp~g~~l~~~s-~dg------~ 492 (587)
...|++++|+|++++|++|+.||.|++||++ +.....+..+ |...+.+++|++++.++++.+ .+| .
T Consensus 192 ~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~ 270 (434)
T 2oit_A 192 TVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPD 270 (434)
T ss_dssp GGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCE
T ss_pred CCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCc
Confidence 9999999999999999999999999999998 4444444321 233799999999887775543 443 3
Q ss_pred EEEEEcCCc
Q 007855 493 ILIYSTRER 501 (587)
Q Consensus 493 I~iwd~~~~ 501 (587)
+++|++...
T Consensus 271 v~i~~l~~~ 279 (434)
T 2oit_A 271 VVMALLPKK 279 (434)
T ss_dssp EEEEECCCT
T ss_pred eEEEEeccC
Confidence 899998754
No 160
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=9e-18 Score=185.35 Aligned_cols=231 Identities=10% Similarity=0.056 Sum_probs=167.4
Q ss_pred cCCceeeEEEecCCCeEEEEeC-CCeEEEEECCCCcEEEEeecC-CcceEEEEccCCCCCcEEEEEeC---CCcEEEEeC
Q 007855 339 HSKAVRDISFCNDGTKFLTASY-DKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDDDKQNILLAGMS---DKKIVQWDM 413 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~-Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~---dg~I~iwD~ 413 (587)
+..+|.+++|+|||++|++++. ||+++||++.+++..+..... .......|+|+ .+++++.. +....+|.+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd----~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG----RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS----EEEEEEECSTTSCCEEEEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC----eEEEEeccCCCCcceEEEEE
Confidence 3567999999999999999887 999999999766654433333 23445555543 46776664 454555544
Q ss_pred CC---CcEEEEEccCCCCeeEEEEecCCCE-EEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 414 NT---KEITQEYDQHLGAVNTITFVDNNRR-FVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 414 ~t---~~~~~~~~~h~~~I~~i~~sp~~~~-l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
.. +... .+... ..+...+|+|+++. +++++.++.+.+||+.++........ .. .+++|+|+|++|++++.
T Consensus 96 ~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~-~~---~~~~~spDG~~la~~~~ 169 (582)
T 3o4h_A 96 NTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL-PG---FGFVSDIRGDLIAGLGF 169 (582)
T ss_dssp ETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE-SS---CEEEEEEETTEEEEEEE
T ss_pred eccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC-CC---ceEEECCCCCEEEEEEE
Confidence 32 2222 33322 34556788888863 44445555667999988876554432 22 78999999999998887
Q ss_pred C----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC--cEEEEeCCCCeeEEEEecCCCCEEE
Q 007855 490 D----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLKCHEGVCIG 563 (587)
Q Consensus 490 d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG--~I~vwd~~t~~~~~~l~~h~~~V~~ 563 (587)
+ +.|++||+.++... .+..+ ...+..++|||||++|++++.+| .|++||+.+++.. .+..|...+..
T Consensus 170 ~~~~~~~i~~~d~~~g~~~----~l~~~--~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~ 242 (582)
T 3o4h_A 170 FGGGRVSLFTSNLSSGGLR----VFDSG--EGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSS 242 (582)
T ss_dssp EETTEEEEEEEETTTCCCE----EECCS--SCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHH
T ss_pred cCCCCeEEEEEcCCCCCce----EeecC--CCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhh
Confidence 7 78999998876432 33334 35568899999999999888888 8999999999887 77778777776
Q ss_pred EE--------EcCCCCCEEEEEECCCcEEEcC
Q 007855 564 CE--------WHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 564 v~--------~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+. |+|++ .++++++.||.++||+
T Consensus 243 ~~~~~~~~~~~spdg-~~~~~~~~~g~~~l~~ 273 (582)
T 3o4h_A 243 YRPTAITWLGYLPDG-RLAVVARREGRSAVFI 273 (582)
T ss_dssp HCCSEEEEEEECTTS-CEEEEEEETTEEEEEE
T ss_pred hhhccccceeEcCCC-cEEEEEEcCCcEEEEE
Confidence 77 99954 8999999999999995
No 161
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=3.5e-17 Score=170.33 Aligned_cols=271 Identities=13% Similarity=0.073 Sum_probs=180.3
Q ss_pred eEEEEEccCCCcEEEEEeC-C--CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEE
Q 007855 299 VSAIRFFPKYGHLILSAGM-D--TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVI 375 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~-D--g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i 375 (587)
+.+++|+|+ |++|+.+.. + ..|.+|++ ..++......++...+..+.|+|+|++|+.++.++.|.+||+.+++..
T Consensus 38 ~~~~~~Spd-G~~l~~~~~~~g~~~l~~~d~-~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~ 115 (396)
T 3c5m_A 38 FYQKCFTQD-GKKLLFAGDFDGNRNYYLLNL-ETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ 115 (396)
T ss_dssp TTSCCBCTT-SCEEEEEECTTSSCEEEEEET-TTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE
T ss_pred eecCcCCCC-CCEEEEEEecCCCceEEEEEC-CCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE
Confidence 788899999 777666543 2 47888898 566554433333333344889999999999999999999999998876
Q ss_pred EEeecCCcce-E---E----------------EEccCCCCCcEEEEE-----eCCCcEEEEeCCCCcEEEEEccCCCCee
Q 007855 376 RTFSTGKIPY-V---V----------------KLNPDDDKQNILLAG-----MSDKKIVQWDMNTKEITQEYDQHLGAVN 430 (587)
Q Consensus 376 ~~~~~~~~~~-~---~----------------~~~~~~~~~~~l~sg-----~~dg~I~iwD~~t~~~~~~~~~h~~~I~ 430 (587)
..+....... . + .+.|++ ..++.+ ..+..|++||+.+++..... .+...+.
T Consensus 116 ~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg---~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~ 191 (396)
T 3c5m_A 116 VIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLT---SWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLG 191 (396)
T ss_dssp EEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC---SHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEE
T ss_pred EEEecccccCCCCCEEEeccCCccccccccccccCCCC---cceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccc
Confidence 6555332210 1 1 112211 222222 35568999999988765554 4677899
Q ss_pred EEEEec-CCCEEEEEECC------CCEEEEECCCCeEEEEeecCC-CcceeEEEEeCCCCEEEEEECC-----CeEEEEE
Q 007855 431 TITFVD-NNRRFVTSSDD------KSLRVWEFGIPVVIKYISEPH-MHSMPSISLHPNTNWLAAQSLD-----NQILIYS 497 (587)
Q Consensus 431 ~i~~sp-~~~~l~s~s~D------g~I~iwd~~~~~~~~~~~~~~-~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd 497 (587)
.+.|+| ++..|+.++.+ ..|.+|++...... .+.... ...+..++|+|+|++|+..+.+ +.|++||
T Consensus 192 ~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d 270 (396)
T 3c5m_A 192 HPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKAN 270 (396)
T ss_dssp EEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEEC
T ss_pred cceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEE
Confidence 999999 78877776654 35888898765433 332221 3357889999999988777654 4599999
Q ss_pred cCCceeecccceecccccccceEEEEEcC-CCCEEEEEc----------------CCCcEEEEeCCCCeeEEEEecCCC-
Q 007855 498 TRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVMSGD----------------GEGKCWFWDWKSCKVFRTLKCHEG- 559 (587)
Q Consensus 498 ~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~L~sgs----------------~dG~I~vwd~~t~~~~~~l~~h~~- 559 (587)
+.++.... +..+.+ .. +.|+| +|++|++++ .++.|++||+.+++.. .+..+..
T Consensus 271 ~~~g~~~~-l~~~~~------~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~~ 341 (396)
T 3c5m_A 271 PETLENEE-VMVMPP------CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQ-KLCKHSTS 341 (396)
T ss_dssp TTTCCEEE-EEECCS------EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCC-EEEECCCC
T ss_pred CCCCCeEE-eeeCCC------CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceE-EccCCCCc
Confidence 97764321 111111 12 78999 999888754 3478999999888753 4444544
Q ss_pred ----------CEEEEEEcCCCCCEEEEEE-CCCcEEEc
Q 007855 560 ----------VCIGCEWHPLEQSKVATCG-WDGLIKYW 586 (587)
Q Consensus 560 ----------~V~~v~~sp~~~~~l~s~g-~DG~I~iW 586 (587)
.+..+.|+| ++..|+.++ .++...||
T Consensus 342 ~~~~~~~~~~~~~~~~~s~-dg~~l~~~s~~~~~~~l~ 378 (396)
T 3c5m_A 342 WDVLDGDRQITHPHPSFTP-NDDGVLFTSDFEGVPAIY 378 (396)
T ss_dssp CCCBTTBSSTTCCCCEECT-TSSEEEEEECTTSSCEEE
T ss_pred cccccccccCCCCCceEcc-CCCeEEEEecCCCCceEE
Confidence 256788999 555666555 46666665
No 162
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=4.1e-16 Score=161.81 Aligned_cols=268 Identities=13% Similarity=0.155 Sum_probs=193.8
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEe----------CCCeEEEEecCCCCeeeEEEccc------CCceeeEEEec
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVFNSGKCMRTYMGH------SKAVRDISFCN 350 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h------~~~V~~l~fs~ 350 (587)
+++.++..+..+ .++|+|+ +++|++++ .++.|.+||+ .+.+.+..+... ......++|+|
T Consensus 42 ~~~~~i~~g~~p--~i~~spd-g~~lyv~~~~~~~~~~g~~~~~v~v~d~-~t~~~~~~i~~~~~~~~~g~~p~~i~~sp 117 (361)
T 2oiz_A 42 KFLGMVPTAFNG--HVQVSND-GKKIYTMTTYHERITRGKRSDVVEVWDA-DKLTFEKEISLPPKRVQGLNYDGLFRQTT 117 (361)
T ss_dssp CEEEEEECCEEE--EEEECTT-SSEEEEEEEEETTSSSSCEEEEEEEEET-TTCCEEEEEEECTTBCCBCCCGGGEEECT
T ss_pred eEEEEecCCCCC--ceEECCC-CCEEEEEEecccccccCCCCCEEEEEEC-cCCcEEEEEEcCccccccCCCcceEEECC
Confidence 455677766655 8999999 88888775 3678999999 677777776532 34578899999
Q ss_pred CCCeEEEEeC--CCeEEEEECCCCcEEEE-eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEE----
Q 007855 351 DGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEY---- 422 (587)
Q Consensus 351 dg~~l~s~s~--Dg~I~vWd~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~---- 422 (587)
+|++|+++.. ++.|.+||+.+++.+.. +..+... .+.+.|.+. ..+++.+.||.+.+|++.. ++.....
T Consensus 118 dg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~-~v~~~p~~~--~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~ 194 (361)
T 2oiz_A 118 DGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCW-SVIPQPNRP--RSFMTICGDGGLLTINLGEDGKVASQSRSKQ 194 (361)
T ss_dssp TSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEE-EEEECTTSS--SEEEEEETTSSEEEEEECTTSSEEEEEECCC
T ss_pred CCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcc-eeEEcCCCC--eeEEEECCCCcEEEEEECCCCcEeeeccccc
Confidence 9999998874 58999999999999888 7654432 244555442 5788899999999999865 5544221
Q ss_pred --ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe--EEEEeecCC---------CcceeEEEEeCCCCEEEEEEC
Q 007855 423 --DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV--VIKYISEPH---------MHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 423 --~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~~---------~~~i~~i~~sp~g~~l~~~s~ 489 (587)
..+..++ .+.+++++..++..+.++.|.++|+.... ....+.... ......++++|+++.++++..
T Consensus 195 ~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~ 273 (361)
T 2oiz_A 195 MFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMH 273 (361)
T ss_dssp CSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEE
T ss_pred eEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEc
Confidence 1222222 33446777788888889999999986543 222221100 011223789999888877653
Q ss_pred -----------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC--eeEEEEec
Q 007855 490 -----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC--KVFRTLKC 556 (587)
Q Consensus 490 -----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~--~~~~~l~~ 556 (587)
.+.|.+||+.+...+.. +..+ . ...++|+|+|++|++++. +.|.+||..++ +.+.++..
T Consensus 274 ~~~~~~~~~~~~~~v~viD~~t~~~v~~---i~~~---~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~ 345 (361)
T 2oiz_A 274 PDGKEGTHKFPAAEIWVMDTKTKQRVAR---IPGR---D-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEG 345 (361)
T ss_dssp SSCCTTCTTCCCSEEEEEETTTTEEEEE---EECT---T-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETT
T ss_pred cCCCcccccCCCceEEEEECCCCcEEEE---EecC---C-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEecc
Confidence 35899999988765543 3323 2 667999999999999887 99999999999 99999877
Q ss_pred CCCCEEEEEEcCCC
Q 007855 557 HEGVCIGCEWHPLE 570 (587)
Q Consensus 557 h~~~V~~v~~sp~~ 570 (587)
+......++++|++
T Consensus 346 ~G~~P~~~~~~p~G 359 (361)
T 2oiz_A 346 AAEASLQVQFHPVG 359 (361)
T ss_dssp SCSSEEEEEECCCS
T ss_pred CCCCcEEEEecCCC
Confidence 77788999999943
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.76 E-value=2.7e-16 Score=163.06 Aligned_cols=247 Identities=12% Similarity=0.090 Sum_probs=169.0
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-CCceeeEEEecCCCe--EEEEe------------
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-SKAVRDISFCNDGTK--FLTAS------------ 359 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs~dg~~--l~s~s------------ 359 (587)
+...+..++|+|+ +++|++++.+ .|.+|++..++++....... .+.+.+++|+|+|++ +++++
T Consensus 38 ~~~~~~~~a~spd-g~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 38 QDEPISWMTFDHE-RKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TTCCCSEEEECTT-SSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCCcEEEECCC-CCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 4457889999999 8888888887 99999993266655433211 134677999999994 44553
Q ss_pred -CCCeEEEEECC-CCcEEEEee-----cCCcceEEEEccCCCCCcEEEEEe-CCCcEEEEeCC-CCcEE--EEEc--cCC
Q 007855 360 -YDKNIKYWDTE-TGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMN-TKEIT--QEYD--QHL 426 (587)
Q Consensus 360 -~Dg~I~vWd~~-t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~sg~-~dg~I~iwD~~-t~~~~--~~~~--~h~ 426 (587)
.++.+.+|++. .++....+. ....+..+.++|++. +++++. .++.|.+|++. +++.. ..+. .|.
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~---~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET---YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS---EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC---EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 466554443 344567788888653 455544 46899999998 77653 3333 245
Q ss_pred CCeeEEEEecCCCEEEEEEC-CCCEEEEECC--CCeEE---EEeec-CC-----Cc------ceeEEE-EeCCCCEEEEE
Q 007855 427 GAVNTITFVDNNRRFVTSSD-DKSLRVWEFG--IPVVI---KYISE-PH-----MH------SMPSIS-LHPNTNWLAAQ 487 (587)
Q Consensus 427 ~~I~~i~~sp~~~~l~s~s~-Dg~I~iwd~~--~~~~~---~~~~~-~~-----~~------~i~~i~-~sp~g~~l~~~ 487 (587)
..+..++|+|+++++++++. ++.|.+|++. ++... ..+.. +. .. .+..++ |+|+|++|+++
T Consensus 193 ~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~ 272 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred CCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEE
Confidence 67999999999999888875 6889999875 34432 12211 11 11 478899 99999998877
Q ss_pred ECC-C-----eEEEEEcC-CceeecccceecccccccceEEEEEcC---CCCEEEEEcCC-CcEEEEeCCCC
Q 007855 488 SLD-N-----QILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSP---DGRFVMSGDGE-GKCWFWDWKSC 548 (587)
Q Consensus 488 s~d-g-----~I~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~L~sgs~d-G~I~vwd~~t~ 548 (587)
..+ + .|.+|++. ++...........+ ......++|+| +|++|++++.+ +.|.+|++...
T Consensus 273 ~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 643 2 89999986 33321111011111 12234588999 89999998864 89999998766
No 164
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.75 E-value=2.9e-16 Score=167.05 Aligned_cols=199 Identities=11% Similarity=0.041 Sum_probs=142.9
Q ss_pred CCCCCeEEEEEccCCCcEEE----EEeCCCeEEEEecCCC-----C--e---eeEEEcccCCceeeEEEecC-CCeEEEE
Q 007855 294 GHTKGVSAIRFFPKYGHLIL----SAGMDTKVKIWDVFNS-----G--K---CMRTYMGHSKAVRDISFCND-GTKFLTA 358 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~----sgs~Dg~I~iWd~~~~-----~--~---~~~~~~~h~~~V~~l~fs~d-g~~l~s~ 358 (587)
.|...|++|+|+|+ +++|+ +|+.|++|+|||+... . + .+..+.+|...|.+++|+|+ +.+|+++
T Consensus 90 ~~~~~v~~l~~spd-g~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCD-NLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTT-SCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCC-CCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence 46778999999999 88888 8899999999998321 1 1 24566789999999999997 8899999
Q ss_pred eCCCeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-------CCee
Q 007855 359 SYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-------GAVN 430 (587)
Q Consensus 359 s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-------~~I~ 430 (587)
+.||+|++||++++..+..... ...+.+++|++++ .+|++|+.||.|++||++ ++....+..|. ..|.
T Consensus 169 s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~ 244 (434)
T 2oit_A 169 LADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVL 244 (434)
T ss_dssp ETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred ECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEE
Confidence 9999999999999876654433 4466788888864 579999999999999998 66566655442 3899
Q ss_pred EEEEecCCCEEEEE-ECCCC------EEEEECCCC-----eEEEEeecC------CCcceeEEEEeCCCCEEEEEEC-CC
Q 007855 431 TITFVDNNRRFVTS-SDDKS------LRVWEFGIP-----VVIKYISEP------HMHSMPSISLHPNTNWLAAQSL-DN 491 (587)
Q Consensus 431 ~i~~sp~~~~l~s~-s~Dg~------I~iwd~~~~-----~~~~~~~~~------~~~~i~~i~~sp~g~~l~~~s~-dg 491 (587)
+++|++++.++++. +.+|. +++|+++.. .....+... ...+...+...++.+++++++. .+
T Consensus 245 ~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~ 324 (434)
T 2oit_A 245 DVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAAST 324 (434)
T ss_dssp EEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCS
T ss_pred EEEEecCceEEEEEccCCCccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCC
Confidence 99999988776553 34432 899999754 222222211 1222223444466677666654 34
Q ss_pred eEEEEE
Q 007855 492 QILIYS 497 (587)
Q Consensus 492 ~I~iwd 497 (587)
.|.++.
T Consensus 325 dv~vl~ 330 (434)
T 2oit_A 325 EVSILA 330 (434)
T ss_dssp BCEEEE
T ss_pred ceeEEE
Confidence 455554
No 165
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=188.40 Aligned_cols=283 Identities=11% Similarity=0.084 Sum_probs=187.0
Q ss_pred EEEEcCCCC---CeEEEEEccCCCcEEEEEeC---------CCeEEEEecCCCCeee--EEEcccCCceeeEEEecCCCe
Q 007855 289 VHTWSGHTK---GVSAIRFFPKYGHLILSAGM---------DTKVKIWDVFNSGKCM--RTYMGHSKAVRDISFCNDGTK 354 (587)
Q Consensus 289 i~tl~gH~~---~V~~l~~sp~~g~~L~sgs~---------Dg~I~iWd~~~~~~~~--~~~~~h~~~V~~l~fs~dg~~ 354 (587)
...+.+|.. .|.+++|||+ |++|++++. ++.|++||+ .+++.+ ..+ ...+.+++|||||++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~SpD-g~~la~~~~~~~~~~~s~~~~i~~~d~-~~g~~~~~~~l---~~~~~~~~~SPDG~~ 123 (719)
T 1z68_A 49 YTILSNRTMKSVNASNYGLSPD-RQFVYLESDYSKLWRYSYTATYYIYDL-SNGEFVRGNEL---PRPIQYLCWSPVGSK 123 (719)
T ss_dssp EEEECHHHHHTTTCSEEEECTT-SSEEEEEEEEEECSSSCEEEEEEEEET-TTTEECCSSCC---CSSBCCEEECSSTTC
T ss_pred EEEEccccccccceeeEEECCC-CCeEEEEecCceeEEeecceEEEEEEC-CCCccccceec---CcccccceECCCCCE
Confidence 344444543 4999999999 888888876 799999999 666652 122 356899999999999
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCCcc-------------------eEEEEccCCCCCcEEEEEeCCC---------
Q 007855 355 FLTASYDKNIKYWDTETGQVIRTFSTGKIP-------------------YVVKLNPDDDKQNILLAGMSDK--------- 406 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~l~sg~~dg--------- 406 (587)
|++++ ++.|++|++.+++.......+... ..+.|+|++. .|++++.|.
T Consensus 124 la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~---~la~~~~d~~~~~~~~~~ 199 (719)
T 1z68_A 124 LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK---FLAYAEFNDTDIPVIAYS 199 (719)
T ss_dssp EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS---EEEEEEEECTTSCEEEEE
T ss_pred EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC---EEEEEEECCCCCceEEee
Confidence 99986 789999999988876543222211 3678888653 566665442
Q ss_pred -------------------------cEEEEeCCCCcEE---E-----EEccCCCCeeEEEEecCCCEEEEEECCC----C
Q 007855 407 -------------------------KIVQWDMNTKEIT---Q-----EYDQHLGAVNTITFVDNNRRFVTSSDDK----S 449 (587)
Q Consensus 407 -------------------------~I~iwD~~t~~~~---~-----~~~~h~~~I~~i~~sp~~~~l~s~s~Dg----~ 449 (587)
.|++||+.+++.. . .+..|...+.+++|+|+++++++....+ .
T Consensus 200 ~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~ 279 (719)
T 1z68_A 200 YYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSV 279 (719)
T ss_dssp ECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEE
T ss_pred ccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEE
Confidence 7889999988642 1 1235788899999999987776654332 3
Q ss_pred EEEEE----CCCCeEEEEee---cCCCccee-----EEEEeCCCCEEEE--EECCC--eEEEEEcCCceeecccceeccc
Q 007855 450 LRVWE----FGIPVVIKYIS---EPHMHSMP-----SISLHPNTNWLAA--QSLDN--QILIYSTRERFQLNKKKRFAGH 513 (587)
Q Consensus 450 I~iwd----~~~~~~~~~~~---~~~~~~i~-----~i~~sp~g~~l~~--~s~dg--~I~iwd~~~~~~~~~~~~~~~~ 513 (587)
|.+|| +.++.....+. ..+...+. .+.|+|+|+.|+. ...+| .|.+|++.++.. ..+..+
T Consensus 280 l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~----~~lt~~ 355 (719)
T 1z68_A 280 LSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA----IQITSG 355 (719)
T ss_dssp EEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC----EECSCS
T ss_pred EEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce----EecccC
Confidence 88899 76665443331 23555555 7899999986554 44455 566677665431 222222
Q ss_pred ccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCC--Ce-eEEEEec----CCCCEEEEEEcCCCCCEEEEEECC-
Q 007855 514 IVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKS--CK-VFRTLKC----HEGVCIGCEWHPLEQSKVATCGWD- 580 (587)
Q Consensus 514 ~~~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t--~~-~~~~l~~----h~~~V~~v~~sp~~~~~l~s~g~D- 580 (587)
...+..+.++ +++.|+..+.+ +.+.+|.+.. +. ....+.. |...+..+.|+|++..++++++.+
T Consensus 356 --~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~ 432 (719)
T 1z68_A 356 --KWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPG 432 (719)
T ss_dssp --SSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBS
T ss_pred --ceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCC
Confidence 2235556666 77777665554 7788887753 42 1233332 556788899999555555565544
Q ss_pred -CcEEEcC
Q 007855 581 -GLIKYWD 587 (587)
Q Consensus 581 -G~I~iWD 587 (587)
..+.+||
T Consensus 433 ~p~~~l~d 440 (719)
T 1z68_A 433 IPISTLHD 440 (719)
T ss_dssp SCEEEEEC
T ss_pred CCeEEEEE
Confidence 3466664
No 166
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=2.8e-16 Score=178.59 Aligned_cols=268 Identities=12% Similarity=0.066 Sum_probs=180.6
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc-----eeeEEEecCCCeEEEEeCC---------Ce
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---------KN 363 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----V~~l~fs~dg~~l~s~s~D---------g~ 363 (587)
...+++|+|+ +.+|+++ |++|++||+ .++++...+.+|... ..+++|||||++|+.++.+ +.
T Consensus 18 ~~~~~~w~~d-g~~~~~~--~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~ 93 (740)
T 4a5s_A 18 KLYSLRWISD-HEYLYKQ--ENNILVFNA-EYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (740)
T ss_dssp CCCCEEECSS-SEEEEEE--TTEEEEEET-TTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cccccEECCC-CcEEEEc--CCcEEEEEC-CCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceE
Confidence 3568899999 8888886 999999999 778887778877643 2348899999999998876 56
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-ccCCCCe-------------
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-DQHLGAV------------- 429 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-~~h~~~I------------- 429 (587)
+.+||+.++++..............|+|++. .|+.+ .++.|++|++.++...+.. .++...+
T Consensus 94 ~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG~---~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 94 YDIYDLNKRQLITEERIPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEETTTTEECCSSCCCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred EEEEECCCCcEEEcccCCCcceeeEECCCCC---EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 7799999998665333345567788888764 35554 5789999999988755422 2232222
Q ss_pred ----eEEEEecCCCEEEEEECCC------------------------------------CEEEEECCC---C---eEEEE
Q 007855 430 ----NTITFVDNNRRFVTSSDDK------------------------------------SLRVWEFGI---P---VVIKY 463 (587)
Q Consensus 430 ----~~i~~sp~~~~l~s~s~Dg------------------------------------~I~iwd~~~---~---~~~~~ 463 (587)
..+.|+|||+.|+.++.|. .|++||+.+ + ... .
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~ 248 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-Q 248 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-E
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-E
Confidence 3589999999999876332 478899887 6 333 3
Q ss_pred eec-----CCCcceeEEEEeCCCCEEEEEECC----CeEEEEEcCCce----eeccccee-cccccccce-----EEEEE
Q 007855 464 ISE-----PHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF----QLNKKKRF-AGHIVAGYA-----CQVNF 524 (587)
Q Consensus 464 ~~~-----~~~~~i~~i~~sp~g~~l~~~s~d----g~I~iwd~~~~~----~~~~~~~~-~~~~~~~~i-----~~l~~ 524 (587)
+.. .+...+..++|+|+|+.++..... ..|.+||+.++. +......+ .++ ..++ ..+.|
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~--~~~v~~~~~~~p~f 326 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMST--TGWVGRFRPSEPHF 326 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECS--SSCSSSSSCCCCEE
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccC--CceEccCcCCCceE
Confidence 322 266678999999999976665432 379999998765 22111110 122 2222 25789
Q ss_pred cCCCCEEE-EEc-CCC--cEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 525 SPDGRFVM-SGD-GEG--KCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 525 spdg~~L~-sgs-~dG--~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
+|||+.|+ ..+ .+| .|++||+.+++.. .+......|..+.+ ++++.+++++.
T Consensus 327 spDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-~lT~g~~~v~~~~~-~d~~~i~f~~~ 382 (740)
T 4a5s_A 327 TLDGNSFYKIISNEEGYRHICYFQIDKKDCT-FITKGTWEVIGIEA-LTSDYLYYISN 382 (740)
T ss_dssp CTTSSEEEEEEECTTSCEEEEEEETTCSSCE-ESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred cCCCCEEEEEEEcCCCceEEEEEECCCCceE-ecccCCEEEEEEEE-EeCCEEEEEEe
Confidence 99999876 554 344 5888998876654 34334445665543 32443444443
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.73 E-value=4.8e-16 Score=173.99 Aligned_cols=285 Identities=7% Similarity=-0.016 Sum_probs=193.1
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEE--eCCCeEEEEecCCCCeeeEEEcccCCcee---------eEEEe--cCCCe-EE
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSA--GMDTKVKIWDVFNSGKCMRTYMGHSKAVR---------DISFC--NDGTK-FL 356 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sg--s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~---------~l~fs--~dg~~-l~ 356 (587)
.+.+|...|..++|+++ .-++++. +.++...||.. ..+...+.+..|...+. ...|+ |||++ |+
T Consensus 18 ~~~~~~~~~~~~~~s~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la 95 (662)
T 3azo_A 18 LVASRSGRPACVGAVGD-EVWWVAPRPAEAGRATLVRR-RADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLV 95 (662)
T ss_dssp HHHHTCSCCEEEEEETT-EEEEEEEETTTTTEEEEEEE-CTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEE
T ss_pred HHhhcCCccceeEEcCC-eEEEEecCcccCCcEEEEEE-CCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEE
Confidence 46789999999999987 6666666 56889999997 44555667777777777 67776 99998 77
Q ss_pred EEeC-CCeEEEEECC--C-CcEEEEeec------CCcceEEEEccCCCCCcEEEEEeCC----------CcEEEEeCCC-
Q 007855 357 TASY-DKNIKYWDTE--T-GQVIRTFST------GKIPYVVKLNPDDDKQNILLAGMSD----------KKIVQWDMNT- 415 (587)
Q Consensus 357 s~s~-Dg~I~vWd~~--t-~~~i~~~~~------~~~~~~~~~~~~~~~~~~l~sg~~d----------g~I~iwD~~t- 415 (587)
.++. +..|.+|++. + +.. ..+.. ......++|+|++ ..|++++.+ ..|++||+.+
T Consensus 96 ~~~~~~~~l~~~~~~~~g~~~~-~~l~~~~~~~~~~~~~~~~~spDg---~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~ 171 (662)
T 3azo_A 96 FTHFGDQRLYAFEPDAPGGAVP-RPLTPVSAVGGGLRWADPVLLPER---GEVWCMAEEFTGEGPSDVRRFLAAVPLDGS 171 (662)
T ss_dssp EEBTTTCCEEEECTTSTTCCCC-EECSCCCCSTTCEEEEEEEEETTT---TEEEEEEEEECSSSTTCEEEEEEEEETTST
T ss_pred EEECCCCeEEEEcCCCCCCCCC-EeccCCccCCCCccccCcEECCCC---CEEEEEEecccCCCCCCceeEEEEEECCCC
Confidence 6554 5667777766 3 443 33333 2234567777765 356666655 5899999988
Q ss_pred -----CcEEEEEc-cCCCCeeEEEEecCCCEEEEEECCC--------CEEEEECC-CC--eEEEEeecCCCcceeEEEEe
Q 007855 416 -----KEITQEYD-QHLGAVNTITFVDNNRRFVTSSDDK--------SLRVWEFG-IP--VVIKYISEPHMHSMPSISLH 478 (587)
Q Consensus 416 -----~~~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg--------~I~iwd~~-~~--~~~~~~~~~~~~~i~~i~~s 478 (587)
+.. ..+. .+...+..+.|+|+|++|+.++.++ .|++||+. ++ .....+...+...+..+.|+
T Consensus 172 ~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s 250 (662)
T 3azo_A 172 AAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA 250 (662)
T ss_dssp TTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC
T ss_pred ccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC
Confidence 554 4455 5667888999999999999887553 79999998 45 23344444456788999999
Q ss_pred CCCCEEEEEECCC--eEEEEEcCCceeecccceecccc----cccceEEEEEcCCCCEEEEEcCCCcEEEE--eCCCCee
Q 007855 479 PNTNWLAAQSLDN--QILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFW--DWKSCKV 550 (587)
Q Consensus 479 p~g~~l~~~s~dg--~I~iwd~~~~~~~~~~~~~~~~~----~~~~i~~l~~spdg~~L~sgs~dG~I~vw--d~~t~~~ 550 (587)
|+|++++++..++ .|.+|++.++....... ..... ....+..++|+|+++++++++. +.+.|| |+.+++
T Consensus 251 pdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~- 327 (662)
T 3azo_A 251 PDGSLIVATDRTGWWNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE- 327 (662)
T ss_dssp TTSCEEEEECTTSSCEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred CCCeEEEEECCCCCeEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence 9999888887788 56666664543221111 11100 0001345899999999999998 998888 655565
Q ss_pred EEEEecCCCCEEEE-EEcCCCCCEEEEEECCCcEEEc
Q 007855 551 FRTLKCHEGVCIGC-EWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 551 ~~~l~~h~~~V~~v-~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+..+..|...+..+ ++.+ +.-++++++.+....||
T Consensus 328 ~~~l~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~i~ 363 (662)
T 3azo_A 328 LVDAAGPWTEWAATLTVSG-TRAVGVAASPRTAYEVV 363 (662)
T ss_dssp EEECCSSCCEEEEEEEEET-TEEEEEEEETTEEEEEE
T ss_pred EEEecCCCCeEEEEEecCC-CEEEEEEcCCCCCCEEE
Confidence 67778888777776 5443 22234444555444444
No 168
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=3.5e-15 Score=148.72 Aligned_cols=238 Identities=11% Similarity=0.217 Sum_probs=173.7
Q ss_pred ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecC-------CcceEEEEccCCCCCcEEEEEeC-CCcEE
Q 007855 338 GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTG-------KIPYVVKLNPDDDKQNILLAGMS-DKKIV 409 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~-------~~~~~~~~~~~~~~~~~l~sg~~-dg~I~ 409 (587)
++-..+.+|+++++++++++.+.++.|.+||.. ++.+..+... ..+..+++.. ..++++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~--~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVR--NSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEET--TTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEc--CCCeEEEEcCCCCCEEE
Confidence 455678999999999988888889999999987 6666666431 2344555532 23355665543 89999
Q ss_pred EEeCCCCcEEEEEc-cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec-CCCcceeEEEEeCCCCEEEEE
Q 007855 410 QWDMNTKEITQEYD-QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 410 iwD~~t~~~~~~~~-~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~ 487 (587)
+|| .+++.+..+. .+...+.+|++.++++++++...++.|.+|+... ..+..+.. .+...+..++++++++++++.
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~ 181 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISD 181 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence 999 5677766664 3446789999999999888777889999999754 44444432 344568899999999988877
Q ss_pred ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC-cEEEEeCCCCeeEEEEecCCC--CEEEE
Q 007855 488 SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-KCWFWDWKSCKVFRTLKCHEG--VCIGC 564 (587)
Q Consensus 488 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG-~I~vwd~~t~~~~~~l~~h~~--~V~~v 564 (587)
+.++.|.+|+.... .+. .+........+..++++++|+++++...++ .|.+|+. +++.+..+..+.. .+.++
T Consensus 182 ~~~~~i~~~~~~g~-~~~---~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i 256 (286)
T 1q7f_A 182 NRAHCVKVFNYEGQ-YLR---QIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDV 256 (286)
T ss_dssp GGGTEEEEEETTCC-EEE---EESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEE
T ss_pred CCCCEEEEEcCCCC-EEE---EEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeE
Confidence 78999999998543 221 222111124567899999999988888876 9999995 5777777766543 47899
Q ss_pred EEcCCCCCEEEEEECCCcEEEcC
Q 007855 565 EWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 565 ~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+++| ++.++++ +.|++|++|+
T Consensus 257 ~~~~-~g~l~vs-~~~~~v~v~~ 277 (286)
T 1q7f_A 257 ALMD-DGSVVLA-SKDYRLYIYR 277 (286)
T ss_dssp EEET-TTEEEEE-ETTTEEEEEE
T ss_pred EECC-CCcEEEE-CCCCeEEEEE
Confidence 9999 6666666 6799999995
No 169
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.73 E-value=4.6e-15 Score=147.79 Aligned_cols=241 Identities=15% Similarity=0.322 Sum_probs=176.2
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc------ccCCceeeEEEe-cCCCeEEEEeC-CCeEE
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM------GHSKAVRDISFC-NDGTKFLTASY-DKNIK 365 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~------~h~~~V~~l~fs-~dg~~l~s~s~-Dg~I~ 365 (587)
+|-..+.+|+++++ +.++++.+.++.|.+|+. . +..+..+. +|...+.++++. +++.++++... ++.|.
T Consensus 27 g~~~~p~~v~~~~~-g~l~v~~~~~~~i~~~d~-~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQ-NDIIVADTNNHRIQIFDK-E-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTT-CCEEEEEGGGTEEEEECT-T-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred CccCCCceEEECCC-CCEEEEECCCCEEEEECC-C-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence 45567999999998 888888888999999998 3 66666664 244678999995 66766665543 89999
Q ss_pred EEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc--cCCCCeeEEEEecCCCEE
Q 007855 366 YWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD--QHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 366 vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~--~h~~~I~~i~~sp~~~~l 441 (587)
+|| .+++.+..+... ..+..+++.+++ +++++...++.|.+||.. ++.+..+. .+...+.+|+++++++++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~ 178 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDNKG---RIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF 178 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECTTS---CEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeCCC---CEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence 999 567777777543 345566666643 577777778999999964 55555553 355678999999999888
Q ss_pred EEEECCCCEEEEECCCCeEEEEeec-CCCcceeEEEEeCCCCEEEEEECCC-eEEEEEcCCceeecccceecccccccce
Q 007855 442 VTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRERFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~s~dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~i 519 (587)
++.+.++.|++|+.... .+..+.. .+...+..++++++|+++++...++ .|.+|+.... .+. .+..+.....+
T Consensus 179 v~~~~~~~i~~~~~~g~-~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~-~~~---~~~~~~~~~~~ 253 (286)
T 1q7f_A 179 ISDNRAHCVKVFNYEGQ-YLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQ-LIS---ALESKVKHAQC 253 (286)
T ss_dssp EEEGGGTEEEEEETTCC-EEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSC-EEE---EEEESSCCSCE
T ss_pred EEECCCCEEEEEcCCCC-EEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCC-EEE---EEcccCCCCcc
Confidence 87778899999998544 4444432 2235688999999999888887776 9999996543 222 22222222346
Q ss_pred EEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 520 CQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 520 ~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
..++++|+|+++++ +.++.|++|++...
T Consensus 254 ~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 254 FDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred eeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 68999999987777 56899999998654
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=7.8e-16 Score=159.67 Aligned_cols=257 Identities=14% Similarity=0.137 Sum_probs=183.3
Q ss_pred CCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeC----------CCeEEEEECCCCcEEEEeecC-----
Q 007855 317 MDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASY----------DKNIKYWDTETGQVIRTFSTG----- 381 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~----------Dg~I~vWd~~t~~~i~~~~~~----- 381 (587)
.|+.|.+||. .+++.+..+..+..+ .++|+|+|++|++++. ++.|.+||+.+++.+..+...
T Consensus 29 ~d~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~ 105 (361)
T 2oiz_A 29 TESRVHVYDY-TNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQ 105 (361)
T ss_dssp GGCEEEEEET-TTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCC
T ss_pred ccCeEEEEEC-CCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccc
Confidence 4789999998 678888888776655 8999999999998863 678999999999999888643
Q ss_pred --CcceEEEEccCCCCCcEEEEEe-C-CCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCC-CEEEEEECCCCEEEEEC
Q 007855 382 --KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNN-RRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 382 --~~~~~~~~~~~~~~~~~l~sg~-~-dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~ 455 (587)
..+..+.+++++. +|+++. . ++.|.+||+.+++.+.. +.. . ....+.+.|++ ..+++.+.||.+.+|++
T Consensus 106 ~g~~p~~i~~spdg~---~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~ 180 (361)
T 2oiz_A 106 GLNYDGLFRQTTDGK---FIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGGLLTINL 180 (361)
T ss_dssp BCCCGGGEEECTTSS---EEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSSEEEEEE
T ss_pred cCCCcceEEECCCCC---EEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCcEEEEEE
Confidence 4566788888653 555554 3 68999999999988877 542 2 22335667765 67888999999999998
Q ss_pred CC-CeEEEEee-----cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec--c----c--ccccceEE
Q 007855 456 GI-PVVIKYIS-----EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--G----H--IVAGYACQ 521 (587)
Q Consensus 456 ~~-~~~~~~~~-----~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~--~----~--~~~~~i~~ 521 (587)
.. +....... .....+ ..+.+++++..++..+.++.|.++|+...... ....+. . . ........
T Consensus 181 ~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~p~g~~~ 258 (361)
T 2oiz_A 181 GEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVK-VDGPWSLLNDEDKAKNWVPGGYNL 258 (361)
T ss_dssp CTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCE-EEEEEESCCHHHHHTTCEECCSSC
T ss_pred CCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCce-ecccccccCccccccccccCCeeE
Confidence 65 44331211 111112 22334667777888888999999998643211 001000 0 0 00011112
Q ss_pred EEEcCCCCEEEEEcC-----------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 522 VNFSPDGRFVMSGDG-----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 522 l~~spdg~~L~sgs~-----------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++|+|+++.++++.. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++++. +.|.|||
T Consensus 259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~D 331 (361)
T 2oiz_A 259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVYD 331 (361)
T ss_dssp EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEEE
T ss_pred EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEEE
Confidence 789999888877643 3479999999999999999887 89999999 6668888886 9999997
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=4.1e-15 Score=152.01 Aligned_cols=240 Identities=10% Similarity=0.144 Sum_probs=177.7
Q ss_pred CCceeeEEEecCCCeEEEEeCC------------------------CeEEEEECCCCcEEEEeecCC--cceEEEEccCC
Q 007855 340 SKAVRDISFCNDGTKFLTASYD------------------------KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDD 393 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~D------------------------g~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~ 393 (587)
-..|.+|+++++|+++++.+.+ +.|.+||..+++.+..+.... .+..+++.+++
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g 102 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG 102 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence 3578999999999988888777 479999999999887775443 45667776543
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCc-EEEEE---------ccCCCCeeEEEEec-CCCEEEEEE-CCCCEEEEECCCCeEE
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKE-ITQEY---------DQHLGAVNTITFVD-NNRRFVTSS-DDKSLRVWEFGIPVVI 461 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~---------~~h~~~I~~i~~sp-~~~~l~s~s-~Dg~I~iwd~~~~~~~ 461 (587)
+++++...++.|++||..... .+..+ ..+......|+++| ++.++++.+ .++.|++|+. .+..+
T Consensus 103 ---~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~ 178 (329)
T 3fvz_A 103 ---NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFV 178 (329)
T ss_dssp ---CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEE
T ss_pred ---CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEE
Confidence 578888888999999986552 45555 34556789999999 788888776 6899999994 45555
Q ss_pred EEeec---------CCCcceeEEEEeCC-CCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC-----
Q 007855 462 KYISE---------PHMHSMPSISLHPN-TNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP----- 526 (587)
Q Consensus 462 ~~~~~---------~~~~~i~~i~~sp~-g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp----- 526 (587)
..+.. ........++++|+ +.++++...++.|++|+..++..+... ........+..++|+|
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~---~~~~~~~~~~~~~~~pg~~~~ 255 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI---KHASFGRNVFAISYIPGFLFA 255 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE---CCTTTTTCEEEEEEETTEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE---eccccCCCcceeeecCCEEEE
Confidence 55431 12234789999998 777777778899999999855544322 2122234566788999
Q ss_pred -CCCEEEEEcCCCcEEEEeCCCCeeEEEEe---cCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 527 -DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 527 -dg~~L~sgs~dG~I~vwd~~t~~~~~~l~---~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+|+.+++...+..|++|+..+++.+..+. ++...+.+++++| ++.++++...++.|++|+
T Consensus 256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~ 319 (329)
T 3fvz_A 256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFT 319 (329)
T ss_dssp EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECT-TSEEEEEESSSCCEEEEE
T ss_pred eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECC-CCCEEEEECCCCEEEEEe
Confidence 33333333445689999999999998884 5677899999999 567888888899999985
No 172
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.70 E-value=2.8e-15 Score=152.70 Aligned_cols=269 Identities=13% Similarity=0.179 Sum_probs=189.0
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
..|.+|+|+++ +..+++.+.++.+++|. +.....+..+...+.+++|+++|++++++..++.|.+||..+++...
T Consensus 6 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~ 80 (333)
T 2dg1_A 6 QDLPTLFYSGK-SNSAVPIISESELQTIT----AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKR 80 (333)
T ss_dssp CCCCBCCSCGG-GGCSSCCCCGGGSCEEE----CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEE
T ss_pred cccceeeecCC-ccceeEEeecccCcccc----cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEE
Confidence 34778889998 67777778889999993 45566677777788999999999988888889999999999888765
Q ss_pred Ee-ecCCcceEEEEccCCCCCcEEEEEeCC----CcEEEEeCCCCcEEEEEc--cCCCCeeEEEEecCCCEEEEEEC---
Q 007855 377 TF-STGKIPYVVKLNPDDDKQNILLAGMSD----KKIVQWDMNTKEITQEYD--QHLGAVNTITFVDNNRRFVTSSD--- 446 (587)
Q Consensus 377 ~~-~~~~~~~~~~~~~~~~~~~~l~sg~~d----g~I~iwD~~t~~~~~~~~--~h~~~I~~i~~sp~~~~l~s~s~--- 446 (587)
.. .....+..+.+.+++ +++++...+ +.|.+||..++.....+. .+...+++++++|+++++++...
T Consensus 81 ~~~~~~~~~~~i~~~~dg---~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 157 (333)
T 2dg1_A 81 PFVSHKANPAAIKIHKDG---RLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYS 157 (333)
T ss_dssp EEECSSSSEEEEEECTTS---CEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBT
T ss_pred EeeCCCCCcceEEECCCC---cEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccc
Confidence 54 334556667776643 466666555 689999998887654443 24467899999999987776654
Q ss_pred ---CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCC-ceeeccc-----ceecccccc
Q 007855 447 ---DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRE-RFQLNKK-----KRFAGHIVA 516 (587)
Q Consensus 447 ---Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~-~~~~~~~-----~~~~~~~~~ 516 (587)
.+.|..|+.......... .....+..++|+|++++|+++ +.++.|.+|++.. +..+... ..+.++
T Consensus 158 ~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~--- 232 (333)
T 2dg1_A 158 TNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH--- 232 (333)
T ss_dssp TBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS---
T ss_pred cCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC---
Confidence 245666665554433322 123346889999999866555 4578999999853 2211111 011111
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCC------CEEEEEEcCCCCCEEEEEECC
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEG------VCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~------~V~~v~~sp~~~~~l~s~g~D 580 (587)
..+..++++++|+++++...++.|.+||. .++.+..+..+.. .+.+++|+| ++..|+.++.+
T Consensus 233 ~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 233 EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT-TSCEEEEEEEC
T ss_pred CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC-CCCEEEEEeCc
Confidence 34567999999998888878899999998 5777777765543 688999998 45555554444
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.70 E-value=6.1e-15 Score=150.68 Aligned_cols=243 Identities=13% Similarity=0.201 Sum_probs=179.0
Q ss_pred CCeEEEEEccCCCcEEEEEeCC------------------------CeEEEEecCCCCeeeEEEc-ccCCceeeEEEecC
Q 007855 297 KGVSAIRFFPKYGHLILSAGMD------------------------TKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCND 351 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~D------------------------g~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~d 351 (587)
+.|.+|+++|+ |+++++.+.+ ++|.+||. .+++.+..+. ++-.....|+++++
T Consensus 24 ~~v~~va~d~~-G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~p~gia~d~~ 101 (329)
T 3fvz_A 24 GQVSGVALDSK-NNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDP-NNAEILQSSGKNLFYLPHGLSIDTD 101 (329)
T ss_dssp SCEEEEEECTT-CCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECT-TTCCEEEEECTTTCSSEEEEEECTT
T ss_pred CCceEEEECCC-CCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEEC-CCCeEEeccCCCccCCceEEEECCC
Confidence 56999999999 8999888877 47999998 6677776664 45567899999999
Q ss_pred CCeEEEEeCCCeEEEEECCCCc-EEEEeec--------C--CcceEEEEccCCCCCcEEEEEe-CCCcEEEEeCCCCcEE
Q 007855 352 GTKFLTASYDKNIKYWDTETGQ-VIRTFST--------G--KIPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEIT 419 (587)
Q Consensus 352 g~~l~s~s~Dg~I~vWd~~t~~-~i~~~~~--------~--~~~~~~~~~~~~~~~~~l~sg~-~dg~I~iwD~~t~~~~ 419 (587)
|+++++.+.++.|++||..... .+..+.. . ..+..+++.+. .+.++++.+ .++.|++|+ .++..+
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~--~g~lyv~d~~~~~~I~~~~-~~g~~~ 178 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS--TGAVFVSDGYCNSRIVQFS-PSGKFV 178 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT--TCCEEEEECSSCCEEEEEC-TTSCEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC--CCeEEEEeCCCCCeEEEEc-CCCCEE
Confidence 9988888889999999986542 4454421 1 13556777762 335777775 689999999 567777
Q ss_pred EEEcc----------CCCCeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeec-CCCcceeEEEEeCCCCEEEE-
Q 007855 420 QEYDQ----------HLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAA- 486 (587)
Q Consensus 420 ~~~~~----------h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~- 486 (587)
..+.. +......|+++|+ +.++++...++.|++|+..++..+..+.. .+...+..++++| +..+++
T Consensus 179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~ 257 (329)
T 3fvz_A 179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVN 257 (329)
T ss_dssp EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEE
T ss_pred EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeC
Confidence 76642 2344899999998 77777777888999999997877777643 3455678899999 333333
Q ss_pred ------EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 487 ------QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 487 ------~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
.+.+..|++|++.++..+.......++ ......++++|+|.++++...+++|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~--~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKH--FDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSSSC--CSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCc--cCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 233458999998877655433211222 34567899999998888888999999999753
No 174
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.69 E-value=2.6e-14 Score=146.00 Aligned_cols=253 Identities=11% Similarity=0.048 Sum_probs=187.1
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
....|.+.. +.++++...++.|.+||. .+++.+.++. .......|+++++++.+++...++.|.+||+.+++....
T Consensus 45 ~~~~i~~~~--~~lyv~~~~~~~v~viD~-~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 45 VAQSMVIRD--GIGWIVVNNSHVIFAIDI-NTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp CEEEEEEET--TEEEEEEGGGTEEEEEET-TTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred cceEEEEEC--CEEEEEEcCCCEEEEEEC-cccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 456777743 567777777899999999 7888888875 346789999999985444444899999999999999988
Q ss_pred eecCC------cceEEEEccCCCCCcEEEEEe-CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC---
Q 007855 378 FSTGK------IPYVVKLNPDDDKQNILLAGM-SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD--- 447 (587)
Q Consensus 378 ~~~~~------~~~~~~~~~~~~~~~~l~sg~-~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D--- 447 (587)
+..+. .+..+.+ . .+.++++.. .++.|.+||+.+++.+..+... .....+.+++++++++++..+
T Consensus 121 i~~g~~~~~~~~p~~i~~-~---~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~ 195 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-Y---GKYVYVNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEG 195 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-E---TTEEEEEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTT
T ss_pred EEcCCccccCCCcceEEE-E---CCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccC
Confidence 88766 6666666 2 234555544 4899999999999988877643 456789999999877776654
Q ss_pred -------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 448 -------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 448 -------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
+.|.+||..+.+....+..+.......++++|++++|+++.. .|.+||..++.... ....... .....
T Consensus 196 ~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-~~~~~~~--~~~p~ 270 (328)
T 3dsm_A 196 SPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-RPFLEFR--DTKYY 270 (328)
T ss_dssp CSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-SCSBCCC--SSCEE
T ss_pred CccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-eeeecCC--CCceE
Confidence 789999999988877765443456889999999999888765 89999997765321 1111111 24566
Q ss_pred EEEEcC-CCCEEEEE----cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 007855 521 QVNFSP-DGRFVMSG----DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 521 ~l~~sp-dg~~L~sg----s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
.++++| ++.++++. ..++.|.+||.. ++.+.++..... ...++|
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~-P~~~~~ 319 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGII-PGAFCW 319 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEES-EEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccC-cceEEE
Confidence 799999 55555665 578899999998 998888875333 345555
No 175
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.68 E-value=3e-14 Score=145.71 Aligned_cols=254 Identities=13% Similarity=0.073 Sum_probs=171.2
Q ss_pred CeEEEEEccCCCcEEEEE---------eCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC---C--e
Q 007855 298 GVSAIRFFPKYGHLILSA---------GMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---K--N 363 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sg---------s~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---g--~ 363 (587)
.+..+++ + |+.|+.. +.++.|.+|++ ..++.. .+ ..+..++|+|||++|+.++.+ + .
T Consensus 16 ~~~~~~~--d-G~~i~~~~~~~~~~~~~~~~~l~~~d~-~~~~~~-~l----~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--K-GELVAYVLTKANLKDNKYENTIVIENL-KNNARR-FI----ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--E-TTEEEEEEEEEETTTTEEEEEEEEEET-TTCCEE-EE----ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--C-CcEEEEEEeecCcccCCccceEEEEeC-CCCceE-Ec----ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4667777 5 6666543 23678999998 455543 33 568899999999999988754 2 4
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeC---------------------------CCcEEEEeCCCC
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMS---------------------------DKKIVQWDMNTK 416 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~---------------------------dg~I~iwD~~t~ 416 (587)
|.+|++.+++......... ...+.|+|++. .|+.++. ...|++||+.++
T Consensus 87 l~~~~~~~g~~~~l~~~~~-~~~~~wspdg~---~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 87 IWVADLETLSSKKILEAKN-IRSLEWNEDSR---KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEETTTTEEEEEEEESE-EEEEEECTTSS---EEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred EEEEECCCCceEEEEcCCC-ccceeECCCCC---EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 8888999888766655544 66677777543 4444442 257999999998
Q ss_pred cEEEEEccCCCCeeEEEEecCCCEEEEEECCC-------CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 417 EITQEYDQHLGAVNTITFVDNNRRFVTSSDDK-------SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 417 ~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg-------~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
+.+..+.. . .+..+.|+|++ ++++++.++ ...||.+.++.. ..+.. + ..+.. ++|+|++|+.++.
T Consensus 163 ~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~-~-~~~~~--~spdg~~l~~~~~ 234 (347)
T 2gop_A 163 EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFE-K-VSFYA--VDSDGERILLYGK 234 (347)
T ss_dssp EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEE-E-ESEEE--EEECSSCEEEEEC
T ss_pred eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEecc-C-cceee--ECCCCCEEEEEEc
Confidence 87455544 3 88999999999 777776542 344554444443 33332 2 33444 3999999888775
Q ss_pred C--------CeEEEEEcCCceeecccceecccccccceEE-EEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCC
Q 007855 490 D--------NQILIYSTRERFQLNKKKRFAGHIVAGYACQ-VNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGV 560 (587)
Q Consensus 490 d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~-l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~ 560 (587)
+ ..|.+|| ++... ....++ ...+.. +.|+ +| ++++++.++.++|| +.+++.. .+..+.+.
T Consensus 235 ~~~~~~~~~~~l~~~d--~~~~~---~l~~~~--~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-~~~~~~~~ 303 (347)
T 2gop_A 235 PEKKYMSEHNKLYIYD--GKEVM---GILDEV--DRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-PIAKGRHW 303 (347)
T ss_dssp CSSSCCCSSCEEEEEC--SSCEE---ESSTTC--CSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-EEECSSSE
T ss_pred cccCCccccceEEEEC--CCceE---eccccC--CcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-EEecCCCe
Confidence 4 3688887 33221 111222 234554 8899 88 88999999999999 8866654 44446778
Q ss_pred EEEEEEcCCCCCEEEEEECCCcE-EEc
Q 007855 561 CIGCEWHPLEQSKVATCGWDGLI-KYW 586 (587)
Q Consensus 561 V~~v~~sp~~~~~l~s~g~DG~I-~iW 586 (587)
|.+++|+| .++++++.++.. .||
T Consensus 304 v~~~~~s~---~~~~~~~~~~~~~~l~ 327 (347)
T 2gop_A 304 IMGFDVDE---IVVYLKETATRLRELF 327 (347)
T ss_dssp EEEEEESS---SEEEEEECSSSCCEEE
T ss_pred EEeeeeeC---cEEEEEcCCCChHHhe
Confidence 99999998 578888777654 555
No 176
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=7.5e-13 Score=131.73 Aligned_cols=275 Identities=12% Similarity=0.106 Sum_probs=190.0
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEE-EcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT-YMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE 370 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~ 370 (587)
+..+...+.+|++.++ +.++++...++.|.+|+. . +..... +..+...+.+|+++++|.++++...++.|..||..
T Consensus 10 ~~~~~~~~~~i~~d~~-g~l~v~~~~~~~v~~~d~-~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~ 86 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDK-GKVWITQHKANMISCINL-D-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK 86 (299)
T ss_dssp CCSSSCCEEEEEECTT-SCEEEEETTTTEEEEECT-T-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCcCCCccceEECCC-CCEEEEecCCCcEEEEcC-C-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC
Confidence 3455678999999999 888887777899999998 3 443322 23355779999999999988877778899999986
Q ss_pred CCcEEEEee---cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCCEEEEEEC
Q 007855 371 TGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 371 t~~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
++. ..+. ....+..+.+.++ +.++++...++.|.+||. ++..... ...+...+.++++.++++.+++...
T Consensus 87 -g~~-~~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~ 160 (299)
T 2z2n_A 87 -GII-KEYTLPNPDSAPYGITEGPN---GDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ 160 (299)
T ss_dssp -SCE-EEEECSSTTCCEEEEEECTT---SCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT
T ss_pred -CcE-EEEeCCCcCCCceeeEECCC---CCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC
Confidence 443 3332 2334555666543 356666667889999999 5554432 2334567899999999988777777
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
++.|.+||. ++.............+.++++++++.++++...++.|.+|+. ++... .. .... ....+..+++++
T Consensus 161 ~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~-~~-~~~~--~~~~~~~i~~~~ 234 (299)
T 2z2n_A 161 NNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEIT-EF-KIPT--PNARPHAITAGA 234 (299)
T ss_dssp TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEE-EE-ECSS--TTCCEEEEEECS
T ss_pred CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEE-EE-ECCC--CCCCceeEEECC
Confidence 789999998 555443322234456789999999987777667889999998 44322 11 1111 134577899999
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEE-EecCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRT-LKCHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~-l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
+|+++++...++.|.+||. +++.... +..+...+.++++ + ++.++++...++.++
T Consensus 235 ~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~-~g~l~v~~~~~~l~~ 290 (299)
T 2z2n_A 235 GIDLWFTEWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-D-GETIWFAMECDKIGK 290 (299)
T ss_dssp TTCEEEEETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-C-SSCEEEEETTTEEEE
T ss_pred CCCEEEeccCCceEEEECC-CCceEEEeCCCCCCccceEEe-c-CCCEEEEecCCcEEE
Confidence 9997777767889999998 4543222 2344567899999 6 666666655444443
No 177
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=7.3e-13 Score=144.98 Aligned_cols=294 Identities=15% Similarity=0.135 Sum_probs=200.0
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecC-CCCeeeEEEcccCCceeeEEEe----cCCCeEEEEe
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVF-NSGKCMRTYMGHSKAVRDISFC----NDGTKFLTAS 359 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~-~~~~~~~~~~~h~~~V~~l~fs----~dg~~l~s~s 359 (587)
..+++.++... ..+..++|+|+ +++|++++.|+.|.+||+. .+.+.+..+.... ....++|+ |+|+++++++
T Consensus 186 t~~v~~~i~~g-~~p~~v~~SpD-Gr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n 262 (567)
T 1qks_A 186 TYEIKTVLDTG-YAVHISRLSAS-GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGA 262 (567)
T ss_dssp TCCEEEEEECS-SCEEEEEECTT-SCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEE
T ss_pred CCeEEEEEeCC-CCccceEECCC-CCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEE
Confidence 44566666533 35779999999 8899999999999999993 3667777776533 46799999 6999988877
Q ss_pred C-CCeEEEEECCCCcEEEEeecCC----------c--ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE--EEEcc
Q 007855 360 Y-DKNIKYWDTETGQVIRTFSTGK----------I--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT--QEYDQ 424 (587)
Q Consensus 360 ~-Dg~I~vWd~~t~~~i~~~~~~~----------~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~--~~~~~ 424 (587)
+ +++|.|+|..+.+.+..+.... . ...+..++ ....+++.....|.|.++|....... ..+ .
T Consensus 263 ~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~--~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~ 339 (567)
T 1qks_A 263 YWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH--YRPEFIVNVKETGKILLVDYTDLNNLKTTEI-S 339 (567)
T ss_dssp EETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS--SSSEEEEEETTTTEEEEEETTCSSEEEEEEE-E
T ss_pred ccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcC--CCCEEEEEecCCCeEEEEecCCCccceeeee-e
Confidence 6 5999999999999998876532 1 12233333 33456677777899999999875432 222 2
Q ss_pred CCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCeEEEEeec----CCCcceeEEEEeCCCCEEEE-EE-CCCeEEEEE
Q 007855 425 HLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPVVIKYISE----PHMHSMPSISLHPNTNWLAA-QS-LDNQILIYS 497 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~----~~~~~i~~i~~sp~g~~l~~-~s-~dg~I~iwd 497 (587)
......++.|+|++++|+++. .++.|.++|+.+++.+..+.. +|......+ ++|++..+++ +. .++.|.++|
T Consensus 340 ~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid 418 (567)
T 1qks_A 340 AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIG 418 (567)
T ss_dssp CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEE
T ss_pred ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEec
Confidence 344577899999999987776 578899999999988777654 232222222 5887555544 43 468999999
Q ss_pred cCCcee----ecccceecccccccceEEEEEcCCCCEEEEEcC-------CCcEEEEeCCCC-----e-eEEEEec----
Q 007855 498 TRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------EGKCWFWDWKSC-----K-VFRTLKC---- 556 (587)
Q Consensus 498 ~~~~~~----~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-------dG~I~vwd~~t~-----~-~~~~l~~---- 556 (587)
...... ......+... ......+.++|++++|++... ...|.++|+.+. . .+..+..
T Consensus 419 ~~~~~~~~~~~kvv~~i~~~--g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~ 496 (567)
T 1qks_A 419 TDPEGHPDNAWKILDSFPAL--GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWA 496 (567)
T ss_dssp CCTTTCTTTBTSEEEEEECS--CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHH
T ss_pred CCCCCCccccCEEEEEEecC--CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecccccc
Confidence 876211 1122222222 111223778999999998763 358999999876 2 2233421
Q ss_pred ----CCCCEEEEEEcCCCCCEEEEEE----CCCcEEEcC
Q 007855 557 ----HEGVCIGCEWHPLEQSKVATCG----WDGLIKYWD 587 (587)
Q Consensus 557 ----h~~~V~~v~~sp~~~~~l~s~g----~DG~I~iWD 587 (587)
....+..+.|+|++..+++|.. .++.|.|+|
T Consensus 497 ~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D 535 (567)
T 1qks_A 497 GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD 535 (567)
T ss_dssp TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred ccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence 2357899999995554555543 378888876
No 178
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.65 E-value=7.7e-14 Score=142.54 Aligned_cols=256 Identities=10% Similarity=0.069 Sum_probs=184.9
Q ss_pred CCCeEEEEecCCCCeeeEEEc------ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEc
Q 007855 317 MDTKVKIWDVFNSGKCMRTYM------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLN 390 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~------~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~ 390 (587)
.++.|.+||. .+++....+. .......++.+. +++.+++...++.|.+||..+++.+..+.....+..+.+.
T Consensus 15 ~~~~l~~~d~-~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~ 92 (328)
T 3dsm_A 15 SNATLSYYDP-ATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFL 92 (328)
T ss_dssp CCBEEEEEET-TTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEE
T ss_pred CCceEEEEEC-CCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEe
Confidence 3899999999 6777655431 122446778875 4455556666799999999999999999777778888887
Q ss_pred cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-----CCeeEEEEecCCCEEEEEE--CCCCEEEEECCCCeEEEE
Q 007855 391 PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDNNRRFVTSS--DDKSLRVWEFGIPVVIKY 463 (587)
Q Consensus 391 ~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-----~~I~~i~~sp~~~~l~s~s--~Dg~I~iwd~~~~~~~~~ 463 (587)
+++ .++++...++.|.+||+.+++....+.... .....+++ .++ .++++. .++.|.+||+.+...+..
T Consensus 93 ~~g---~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~~~-~lyv~~~~~~~~v~viD~~t~~~~~~ 167 (328)
T 3dsm_A 93 SDE---KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-YGK-YVYVNCWSYQNRILKIDTETDKVVDE 167 (328)
T ss_dssp ETT---EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-ETT-EEEEEECTTCCEEEEEETTTTEEEEE
T ss_pred CCC---eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-ECC-EEEEEcCCCCCEEEEEECCCCeEEEE
Confidence 653 444544488999999999999887765433 14567777 344 555554 488999999999988877
Q ss_pred eecCCCcceeEEEEeCCCCEEEEEECC----------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEE
Q 007855 464 ISEPHMHSMPSISLHPNTNWLAAQSLD----------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 533 (587)
Q Consensus 464 ~~~~~~~~i~~i~~sp~g~~l~~~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~s 533 (587)
+.. ......++++|+|++++++..+ +.|.+||..+........... ......++|+|++++|++
T Consensus 168 i~~--g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~----g~~p~~la~~~d~~~lyv 241 (328)
T 3dsm_A 168 LTI--GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL----GDWPSEVQLNGTRDTLYW 241 (328)
T ss_dssp EEC--SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT----TCCCEEEEECTTSCEEEE
T ss_pred EEc--CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC----CCCceeEEEecCCCEEEE
Confidence 754 3345788999999877776554 789999998765443221111 124567999999999988
Q ss_pred EcCCCcEEEEeCCCCeeEEE--EecCCCCEEEEEEcCCCCCEEEEE----ECCCcEEEcC
Q 007855 534 GDGEGKCWFWDWKSCKVFRT--LKCHEGVCIGCEWHPLEQSKVATC----GWDGLIKYWD 587 (587)
Q Consensus 534 gs~dG~I~vwd~~t~~~~~~--l~~h~~~V~~v~~sp~~~~~l~s~----g~DG~I~iWD 587 (587)
+.. .|.+||..+++.... +..+.....+++++|.++.++++. ..++.|.+||
T Consensus 242 ~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d 299 (328)
T 3dsm_A 242 INN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS 299 (328)
T ss_dssp ESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred Ecc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence 766 899999988876421 222245689999999777777776 6788999986
No 179
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=3.8e-14 Score=147.21 Aligned_cols=254 Identities=13% Similarity=0.076 Sum_probs=171.0
Q ss_pred EecCCCCeeeEEEcccCCceee-----EEEecCCCeEEEEeC-CC--eEEEEECCCCcEEEEeecCCcce-EEEEccCCC
Q 007855 324 WDVFNSGKCMRTYMGHSKAVRD-----ISFCNDGTKFLTASY-DK--NIKYWDTETGQVIRTFSTGKIPY-VVKLNPDDD 394 (587)
Q Consensus 324 Wd~~~~~~~~~~~~~h~~~V~~-----l~fs~dg~~l~s~s~-Dg--~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~~ 394 (587)
++. .++..+..+..|...+.. .+|+|||++|+.++. ++ .|.+||+.+++............ ...|+|++
T Consensus 15 ~~~-~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg- 92 (388)
T 3pe7_A 15 QDA-STGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD- 92 (388)
T ss_dssp ECT-TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-
T ss_pred ecC-CCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-
Confidence 344 677778888877766665 889999999999887 66 48889999988776655443332 45688765
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEE--ecCCCEEEEEE----------------------CCCCE
Q 007855 395 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITF--VDNNRRFVTSS----------------------DDKSL 450 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~--sp~~~~l~s~s----------------------~Dg~I 450 (587)
..|+.+..++.|++||+.+++....+..+...+....| ++++..++... .+..|
T Consensus 93 --~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 170 (388)
T 3pe7_A 93 --DALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRL 170 (388)
T ss_dssp --SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEE
T ss_pred --CEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceE
Confidence 46888888899999999999887777666666654444 78998887432 34679
Q ss_pred EEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECC------CeEEEEEcCCceeecccceecccccccceEEEE
Q 007855 451 RVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVN 523 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~ 523 (587)
.+||+.++...... .+...+..+.|+| +|+.|+..+.+ ..|.++++...... .+..+.....+..++
T Consensus 171 ~~~d~~~g~~~~l~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----~l~~~~~~~~~~~~~ 244 (388)
T 3pe7_A 171 MRVDLKTGESTVIL--QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR----KVKTHAEGESCTHEF 244 (388)
T ss_dssp EEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE----ESCCCCTTEEEEEEE
T ss_pred EEEECCCCceEEee--cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE----EeeeCCCCcccccce
Confidence 99999988665444 2455688999999 99999888764 37888887654322 122221113466789
Q ss_pred EcCCCCEEEEEcC-CC----cEEEEeCCCCee--EEEEecCCCC---EEEEEEcCCCCCEEEEE--------ECCCcEEE
Q 007855 524 FSPDGRFVMSGDG-EG----KCWFWDWKSCKV--FRTLKCHEGV---CIGCEWHPLEQSKVATC--------GWDGLIKY 585 (587)
Q Consensus 524 ~spdg~~L~sgs~-dG----~I~vwd~~t~~~--~~~l~~h~~~---V~~v~~sp~~~~~l~s~--------g~DG~I~i 585 (587)
|||||+.|+..+. ++ .|++||+.+++. +..+.++... ...+.|+|++..++++. +.+..|.+
T Consensus 245 ~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~ 324 (388)
T 3pe7_A 245 WVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYV 324 (388)
T ss_dssp ECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEE
T ss_pred ECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEE
Confidence 9999997765432 22 399999999874 3333321100 11236899444333332 44667888
Q ss_pred cC
Q 007855 586 WD 587 (587)
Q Consensus 586 WD 587 (587)
||
T Consensus 325 ~d 326 (388)
T 3pe7_A 325 FN 326 (388)
T ss_dssp EE
T ss_pred Ee
Confidence 86
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.65 E-value=4.2e-13 Score=146.92 Aligned_cols=273 Identities=11% Similarity=0.087 Sum_probs=196.9
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC--CCcEEEEeecCCcceE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE--TGQVIRTFSTGKIPYV 386 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~--t~~~i~~~~~~~~~~~ 386 (587)
+.++++...+++|.++|. .+++.+.++... ..+..+.|+|||++|++++.|+.|.+||+. +++.+..+..+..+..
T Consensus 167 ~~~~V~~~~~~~V~viD~-~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ 244 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDG-STYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS 244 (567)
T ss_dssp GEEEEEETTTTEEEEEET-TTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred ceEEEEeCCCCeEEEEEC-CCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCce
Confidence 567778888999999999 788888877643 457799999999999999999999999996 8899999988888888
Q ss_pred EEEc----cCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccC-----------CCCeeEEEEecCCCEEEEE-ECCCCE
Q 007855 387 VKLN----PDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQH-----------LGAVNTITFVDNNRRFVTS-SDDKSL 450 (587)
Q Consensus 387 ~~~~----~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h-----------~~~I~~i~~sp~~~~l~s~-s~Dg~I 450 (587)
+.++ |++ ..++++...++.|.++|..+.+.+..+... ...+..+..++++..++.. ...|.|
T Consensus 245 ia~s~~~~pDG--k~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v 322 (567)
T 1qks_A 245 IETSKMEGWED--KYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI 322 (567)
T ss_dssp EEECCSTTCTT--TEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred eEEccccCCCC--CEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeE
Confidence 8888 343 356666677799999999999988876422 1257788888876665444 556899
Q ss_pred EEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 451 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
.++|+.....+.............+.|+|++++|++++ .++.|.++|+.++........-......+....+ ++|++.
T Consensus 323 ~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g 401 (567)
T 1qks_A 323 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFG 401 (567)
T ss_dssp EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTE
T ss_pred EEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCC
Confidence 99999876433332223344567889999999987776 5789999999987655443320111111111112 588755
Q ss_pred EE-EEEc-CCCcEEEEeCCC-------CeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC-------CCcEEEcC
Q 007855 530 FV-MSGD-GEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW-------DGLIKYWD 587 (587)
Q Consensus 530 ~L-~sgs-~dG~I~vwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~-------DG~I~iWD 587 (587)
.+ +++. .++.|.++|..+ .+.+.++......-..+..+| ++.+|+.... ...|.|+|
T Consensus 402 ~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p-~~~~l~v~~~~~~~~~~~~~v~v~d 474 (567)
T 1qks_A 402 PVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHP-NSQYLYVDATLNPEAEISGSVAVFD 474 (567)
T ss_dssp EEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCT-TCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred cEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCC-CCCeEEEecCCCCCcccCceEEEEE
Confidence 54 4443 568999999988 678888886644434577899 5666666542 34777765
No 181
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.64 E-value=4.1e-15 Score=168.99 Aligned_cols=237 Identities=12% Similarity=0.157 Sum_probs=162.3
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc------eEEEEccCCCCCcEEEEEeCC---------
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP------YVVKLNPDDDKQNILLAGMSD--------- 405 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~------~~~~~~~~~~~~~~l~sg~~d--------- 405 (587)
....++.|+|+|.+|+++ |+.|++||+.++++...+..+... ....++|++ ..|+.++.+
T Consensus 17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg---~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDG---QFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTS---SEEEEEEEEEECSSSCEE
T ss_pred ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCC---CEEEEEECCeeeEEEccc
Confidence 346789999999888886 899999999999987776654321 125677755 456666655
Q ss_pred CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcce-------------
Q 007855 406 KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSM------------- 472 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i------------- 472 (587)
+.+.+||+.+++... +..|...+...+|+|+|+.|+.++ ++.|++|++.++...+....++...+
T Consensus 92 ~~~~~~d~~~~~~~~-l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~ 169 (740)
T 4a5s_A 92 ASYDIYDLNKRQLIT-EERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV 169 (740)
T ss_dssp EEEEEEETTTTEECC-SSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred eEEEEEECCCCcEEE-cccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence 667899999997653 566778899999999999999885 68999999988765543322222212
Q ss_pred ----eEEEEeCCCCEEEEEECCC------------------------------------eEEEEEcCC---ceeecccce
Q 007855 473 ----PSISLHPNTNWLAAQSLDN------------------------------------QILIYSTRE---RFQLNKKKR 509 (587)
Q Consensus 473 ----~~i~~sp~g~~l~~~s~dg------------------------------------~I~iwd~~~---~~~~~~~~~ 509 (587)
..+.|+|+|++|+..+.|. .|.+||+.+ +..+... .
T Consensus 170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~ 248 (740)
T 4a5s_A 170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-Q 248 (740)
T ss_dssp SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-E
T ss_pred cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-E
Confidence 3589999999999886432 477788876 5211111 1
Q ss_pred eccc----ccccceEEEEEcCCCCEEEEEcC----CCcEEEEeCCCCe----e--EEEE--ecCCCCEE-----EEEEcC
Q 007855 510 FAGH----IVAGYACQVNFSPDGRFVMSGDG----EGKCWFWDWKSCK----V--FRTL--KCHEGVCI-----GCEWHP 568 (587)
Q Consensus 510 ~~~~----~~~~~i~~l~~spdg~~L~sgs~----dG~I~vwd~~t~~----~--~~~l--~~h~~~V~-----~v~~sp 568 (587)
+... ....++..++|||||++++.... +..|++||+.+++ + +..+ ..|...|. ...|+|
T Consensus 249 l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 249 ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred ecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 1110 12467888999999997665533 3479999999887 2 1222 44655443 688999
Q ss_pred CCCCEEE-EEE-CCCc--EEEc
Q 007855 569 LEQSKVA-TCG-WDGL--IKYW 586 (587)
Q Consensus 569 ~~~~~l~-s~g-~DG~--I~iW 586 (587)
+++.|+ ..+ .+|. |.+|
T Consensus 329 -DG~~l~~~~s~~~G~~~l~~~ 349 (740)
T 4a5s_A 329 -DGNSFYKIISNEEGYRHICYF 349 (740)
T ss_dssp -TSSEEEEEEECTTSCEEEEEE
T ss_pred -CCCEEEEEEEcCCCceEEEEE
Confidence 555555 555 4554 5544
No 182
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.63 E-value=1.9e-14 Score=160.95 Aligned_cols=273 Identities=8% Similarity=-0.034 Sum_probs=170.4
Q ss_pred cccccceeeeeCCCCcccCCCcccCCCceEEEEcCCCCCeE---------EEEEc--cCCCcE-EEEEe-CCCeEEEEec
Q 007855 260 EKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVS---------AIRFF--PKYGHL-ILSAG-MDTKVKIWDV 326 (587)
Q Consensus 260 ~~d~~~r~w~~~~~~~~~~~~~~~~p~~~i~tl~gH~~~V~---------~l~~s--p~~g~~-L~sgs-~Dg~I~iWd~ 326 (587)
..+.+.+.|..... .....+..|...|. ..+|+ |+ ++. |+.++ .+..|.+|++
T Consensus 44 ~~~~~~~l~~~~~~-------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPD-g~~~la~~~~~~~~l~~~~~ 109 (662)
T 3azo_A 44 AEAGRATLVRRRAD-------------GAEESALPAPWNVRNRVFEYSGFPWAGVPRPA-GGPLLVFTHFGDQRLYAFEP 109 (662)
T ss_dssp TTTTEEEEEEECTT-------------SCEEESSCTTCCBCCCGGGTCCCCEEEECCSS-SSCEEEEEBTTTCCEEEECT
T ss_pred ccCCcEEEEEECCC-------------CCcceeCCCCccccccccccCCccceeeeecC-CCeEEEEEECCCCeEEEEcC
Confidence 44556677775221 12345566666655 66666 88 555 55444 3566777766
Q ss_pred CCCC-eeeEEEcc-----cCCceeeEEEecCCCeEEEEeCC----------CeEEEEECCC------CcEEEEe-ecCCc
Q 007855 327 FNSG-KCMRTYMG-----HSKAVRDISFCNDGTKFLTASYD----------KNIKYWDTET------GQVIRTF-STGKI 383 (587)
Q Consensus 327 ~~~~-~~~~~~~~-----h~~~V~~l~fs~dg~~l~s~s~D----------g~I~vWd~~t------~~~i~~~-~~~~~ 383 (587)
...+ .....+.. |...+.+++|+|||+.|++++.+ ..|.+||+.+ ++..... .....
T Consensus 110 ~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~ 189 (662)
T 3azo_A 110 DAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRF 189 (662)
T ss_dssp TSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSE
T ss_pred CCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCc
Confidence 2002 34455655 67789999999999999999877 5899999988 6554333 22333
Q ss_pred ceEEEEccCCCCCcEEEEEeCC--------CcEEEEeCC-CC---cEEEEEccCCCCeeEEEEecCCCEEEEEECCC--C
Q 007855 384 PYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMN-TK---EITQEYDQHLGAVNTITFVDNNRRFVTSSDDK--S 449 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~d--------g~I~iwD~~-t~---~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg--~ 449 (587)
...+.|+|++ ..|+.++.+ ..|++||+. ++ +.......|...+..+.|+|+|+++++++.++ .
T Consensus 190 ~~~~~~SpDG---~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~ 266 (662)
T 3azo_A 190 VTGPRLSPDG---RQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWN 266 (662)
T ss_dssp ECCCEECTTS---SEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCE
T ss_pred ccCceECCCC---CEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeE
Confidence 3456677755 356555543 379999999 57 44444555678999999999999888888888 5
Q ss_pred EEEEECCCCeEEEEeecCCCcc--------eeEEEEeCCCCEEEEEECCCeEEEE--EcCCceeecccceecccccccce
Q 007855 450 LRVWEFGIPVVIKYISEPHMHS--------MPSISLHPNTNWLAAQSLDNQILIY--STRERFQLNKKKRFAGHIVAGYA 519 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~--------i~~i~~sp~g~~l~~~s~dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~i 519 (587)
|.+||+..+.... +...+... +..++|+|++.++++++. +.+.|| ++.++. + ..+..+ ...+
T Consensus 267 l~~~~~~~~~~~~-l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~---~~l~~~--~~~~ 338 (662)
T 3azo_A 267 LHRVDPATGAATQ-LCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L---VDAAGP--WTEW 338 (662)
T ss_dssp EEEECTTTCCEEE-SSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E---EECCSS--CCEE
T ss_pred EEEEECCCCceee-cccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E---EEecCC--CCeE
Confidence 6666665555443 32222211 567899999999999988 999999 544443 2 223333 2334
Q ss_pred EEE-EEcCCCCEEEEEcCCC--cEEEEeCCCCeeEEEEecC
Q 007855 520 CQV-NFSPDGRFVMSGDGEG--KCWFWDWKSCKVFRTLKCH 557 (587)
Q Consensus 520 ~~l-~~spdg~~L~sgs~dG--~I~vwd~~t~~~~~~l~~h 557 (587)
..+ +++.+.-++++++.+. .|++||+.+++.......|
T Consensus 339 ~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l~~~~ 379 (662)
T 3azo_A 339 AATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTIGARH 379 (662)
T ss_dssp EEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEEESCC
T ss_pred EEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEeecCC
Confidence 444 4433333334444443 4666777777654433333
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=3.3e-13 Score=135.15 Aligned_cols=244 Identities=11% Similarity=0.127 Sum_probs=174.5
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCc-EEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGH-LILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIK 365 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~ 365 (587)
..+..+..+.....+++|+|+ ++ +++++..++.|.+|+. ..+ ...+..+...+.+++|+++|+++++...++.|.
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~-g~~l~~~~~~~~~i~~~~~-~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~ 93 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPA-RSAVIFSDVRQNRTWAWSD-DGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLE 93 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGG-GTEEEEEEGGGTEEEEEET-TSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEE
T ss_pred CcEEEEecCCccccCCeEeCC-CCEEEEEeCCCCEEEEEEC-CCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEE
Confidence 344566677788999999999 66 8889999999999998 444 667777888899999999999887777778999
Q ss_pred EEECCCCcEEEEeec-----CCcceEEEEccCCCCCcEEEE----Ee-------------CCCcEEEEeCCCCcEEEEEc
Q 007855 366 YWDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GM-------------SDKKIVQWDMNTKEITQEYD 423 (587)
Q Consensus 366 vWd~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~s----g~-------------~dg~I~iwD~~t~~~~~~~~ 423 (587)
+||..+++....... ...+..+.+.+++ +++++ |+ ..+.|..++.. ++. ..+.
T Consensus 94 ~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G---~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~ 168 (296)
T 3e5z_A 94 RQREPGGEWESIADSFEGKKLNSPNDVCLAPDG---SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI 168 (296)
T ss_dssp EECSTTCCEEEEECEETTEECCCCCCEEECTTS---CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE
T ss_pred EEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC---CEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee
Confidence 999988876544321 1223456666643 46665 32 13567777766 443 3445
Q ss_pred cCCCCeeEEEEecCCCEEEEEECCCCEEEEECC-CCeE---EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 424 QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG-IPVV---IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~-~~~~---~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
.+....+.++|+|+++.+++.+.++.|.+|++. .+.. ...+ ......+.+++++++|+++++. ++.|.+|+..
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 567778999999999999777778899999986 4433 2333 3345567789999999866665 8899999986
Q ss_pred CceeecccceecccccccceEEEEE-cCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNF-SPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~-spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
. ..+. .+..+ .. +.+++| +|+++.|++++.+ .|..++.++.++
T Consensus 246 g-~~~~---~~~~~--~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 246 G-DELG---RVLTP--QT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp S-CEEE---EEECS--SC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred C-CEEE---EEECC--CC-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 3 3332 22222 22 667889 6899999888875 466667766554
No 184
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.62 E-value=3e-13 Score=135.46 Aligned_cols=241 Identities=9% Similarity=0.027 Sum_probs=168.4
Q ss_pred CeeeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEEEEECCCCcEEEEeec-CCcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 330 GKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 330 ~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
+..+..+..+.....+++|+++|+ +++++..++.|.+|+..++ ...+.. ...+..+.+.+++ .++++...++.
T Consensus 17 ~~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg---~l~v~~~~~~~ 91 (296)
T 3e5z_A 17 GAEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQG---HLIACSHGLRR 91 (296)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTC---CEEEEETTTTE
T ss_pred CCcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCC---cEEEEecCCCe
Confidence 344455656677789999999998 7778888999999999987 444443 3445667776644 46666656789
Q ss_pred EEEEeCCCCcEEEEEccC----CCCeeEEEEecCCCEEEEEEC-----------------CCCEEEEECCCCeEEEEeec
Q 007855 408 IVQWDMNTKEITQEYDQH----LGAVNTITFVDNNRRFVTSSD-----------------DKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~h----~~~I~~i~~sp~~~~l~s~s~-----------------Dg~I~iwd~~~~~~~~~~~~ 466 (587)
|.+||..+++........ ...++.++++|+|+++++.+. .+.|..++.. +... .+.
T Consensus 92 i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~- 168 (296)
T 3e5z_A 92 LERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-API- 168 (296)
T ss_dssp EEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEE-
T ss_pred EEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eee-
Confidence 999999888765443221 235678999999998887321 2355555554 3332 232
Q ss_pred CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC-CceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 467 PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 467 ~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
........++|+|+++.|++.+.++.|.+|++. ++........+.. ....+..++++++|+++++. ++.|.+|+.
T Consensus 169 ~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~--~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 169 RDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTV--EPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp CCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECC--SSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred cCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeC--CCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 345567889999999999777778999999986 3322011122211 23345569999999876666 788999998
Q ss_pred CCCeeEEEEecCCCCEEEEEEc-CCCCCEEEEEECCCcEEE
Q 007855 546 KSCKVFRTLKCHEGVCIGCEWH-PLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 546 ~t~~~~~~l~~h~~~V~~v~~s-p~~~~~l~s~g~DG~I~i 585 (587)
. ++.+..+..+.. +++++|. | ++..|+.++.+|.+++
T Consensus 245 ~-g~~~~~~~~~~~-~~~~~f~~~-d~~~L~v~t~~~l~~~ 282 (296)
T 3e5z_A 245 D-GDELGRVLTPQT-TSNLCFGGP-EGRTLYMTVSTEFWSI 282 (296)
T ss_dssp T-SCEEEEEECSSC-CCEEEEEST-TSCEEEEEETTEEEEE
T ss_pred C-CCEEEEEECCCC-ceeEEEECC-CCCEEEEEcCCeEEEE
Confidence 6 888888888877 8999995 6 6677888888776554
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.60 E-value=2.5e-13 Score=153.56 Aligned_cols=243 Identities=10% Similarity=0.050 Sum_probs=168.0
Q ss_pred cCCceeeEEEecCCCeEEEEeCCC-----eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc------
Q 007855 339 HSKAVRDISFCNDGTKFLTASYDK-----NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK------ 407 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~Dg-----~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~------ 407 (587)
|...+..++|||||++|+.++.++ .|++||+.+++.+...........+.|+|++. .|+.++.++.
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~---~l~~~~~~~~~~~~~~ 199 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGK---GMFYNAYPQQDGKSDG 199 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSS---EEEEEECCCCSSCCSS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCC---EEEEEEECCccccccc
Confidence 444688999999999998776543 89999999998876433222245678888653 5666666655
Q ss_pred ----------EEEEeCCCCcE--EEEEc--cCCCCeeEEEEecCCCEEEEEEC-----CCCEEEEECCC------Ce-EE
Q 007855 408 ----------IVQWDMNTKEI--TQEYD--QHLGAVNTITFVDNNRRFVTSSD-----DKSLRVWEFGI------PV-VI 461 (587)
Q Consensus 408 ----------I~iwD~~t~~~--~~~~~--~h~~~I~~i~~sp~~~~l~s~s~-----Dg~I~iwd~~~------~~-~~ 461 (587)
|++|++.++.. ...+. .|...+..+.|+|++++|+.++. +..|++||+.+ +. ..
T Consensus 200 ~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~ 279 (710)
T 2xdw_A 200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKW 279 (710)
T ss_dssp SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCC
T ss_pred cccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccce
Confidence 99999988752 22233 35566889999999999888765 56899999976 42 23
Q ss_pred EEeecCCCcceeEEEEeCCCCEEEEEECC----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 462 KYISEPHMHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 462 ~~~~~~~~~~i~~i~~sp~g~~l~~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
..+.. +...+.. .|+|+|..|+..+.. +.|.+|++.++... ....+..+.....+..++|++++.++++...+
T Consensus 280 ~~l~~-~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~ 356 (710)
T 2xdw_A 280 VKLID-NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEES-KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD 356 (710)
T ss_dssp EEEEC-SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred EEeeC-CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-cceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence 33432 3333433 588899888877654 36999998765311 11223333222356678899888888888888
Q ss_pred Cc--EEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC---CCcEEEcC
Q 007855 538 GK--CWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 587 (587)
Q Consensus 538 G~--I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~---DG~I~iWD 587 (587)
+. |++|++.+++.+..+..+.+.|..+.++|++..++++.+. .+.|.+||
T Consensus 357 g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 411 (710)
T 2xdw_A 357 VKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD 411 (710)
T ss_dssp TEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred CEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence 84 6777877888888888888888999999944444444443 36777775
No 186
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.58 E-value=4.5e-14 Score=146.69 Aligned_cols=251 Identities=10% Similarity=-0.019 Sum_probs=165.5
Q ss_pred EEecCCCCeeeEEEcccCCc-----eeeEEEecCCCeEEEEeCC---CeEEEEECCCCcEEEEeecCCcce-EEEEccCC
Q 007855 323 IWDVFNSGKCMRTYMGHSKA-----VRDISFCNDGTKFLTASYD---KNIKYWDTETGQVIRTFSTGKIPY-VVKLNPDD 393 (587)
Q Consensus 323 iWd~~~~~~~~~~~~~h~~~-----V~~l~fs~dg~~l~s~s~D---g~I~vWd~~t~~~i~~~~~~~~~~-~~~~~~~~ 393 (587)
.+|. .++..+..+..+... +.+++|+|+|++|+.++.. ..|.+||+.+++............ ...|+|++
T Consensus 14 ~~d~-~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg 92 (396)
T 3c5m_A 14 FVDS-DTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDE 92 (396)
T ss_dssp EECT-TTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTS
T ss_pred eecC-CCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCC
Confidence 3355 566666666655443 7889999999998877543 478899999887655433332222 25677754
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeE-------------------EEEecCCCEEEEE-----ECCCC
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT-------------------ITFVDNNRRFVTS-----SDDKS 449 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~-------------------i~~sp~~~~l~s~-----s~Dg~ 449 (587)
..|+.++.++.|++||+.+++....+..+...... +.|+|+++.++.+ ..+..
T Consensus 93 ---~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~ 169 (396)
T 3c5m_A 93 ---RAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCR 169 (396)
T ss_dssp ---SEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEE
T ss_pred ---CEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcce
Confidence 46888888889999999998876666544443222 2456666655543 35668
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeC-CCCEEEEEECC------CeEEEEEcCCceeecccceecccccccceEEE
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHP-NTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQV 522 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l 522 (587)
|++||+.++...... .+...+..+.|+| ++..|+..+.+ ..|.+|++..+.... +..+.....+..+
T Consensus 170 l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 170 LIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK----IKEHAEGESCTHE 243 (396)
T ss_dssp EEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE----SSCCCTTEEEEEE
T ss_pred EEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE----eeccCCCccccce
Confidence 999999887765444 3556788999999 78877776654 358888886543211 1111112346678
Q ss_pred EEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEEEecCCCCEEEEEEcC-CCCCEEEEEE----------------CC
Q 007855 523 NFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP-LEQSKVATCG----------------WD 580 (587)
Q Consensus 523 ~~spdg~~L~sgs~d-----G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp-~~~~~l~s~g----------------~D 580 (587)
+|+|+|++|+.++.+ +.|++||+.+++...... ... +. +.|+| ++. +|++++ .+
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg~-~l~~~~~~~p~~~~~~~~~~~~~~ 319 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDGS-LMVGDGCDAPVDVADADSYNIEND 319 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSSS-EEEEEECCC----------CCCCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCCc-eEEEecCCcceeeccccccccCCC
Confidence 999999987766543 449999998886544332 222 33 88998 554 677654 24
Q ss_pred CcEEEcC
Q 007855 581 GLIKYWD 587 (587)
Q Consensus 581 G~I~iWD 587 (587)
+.|.+||
T Consensus 320 ~~i~~~d 326 (396)
T 3c5m_A 320 PFLYVLN 326 (396)
T ss_dssp CEEEEEE
T ss_pred CcEEEEe
Confidence 6788885
No 187
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.58 E-value=4.1e-12 Score=129.13 Aligned_cols=242 Identities=12% Similarity=0.103 Sum_probs=166.2
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC----C
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----K 362 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D----g 362 (587)
+.+..+.++...+.+++|+|+ +.+++++..++.|.+||. .+++.......+...+.+++|+++|+++++...+ +
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~-g~l~~~~~~~~~i~~~d~-~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~ 112 (333)
T 2dg1_A 35 EPWLEISKKGLQLEGLNFDRQ-GQLFLLDVFEGNIFKINP-ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTG 112 (333)
T ss_dssp EEEEEEESSCCCEEEEEECTT-SCEEEEETTTCEEEEECT-TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCC
T ss_pred ceeEEEeccCccccCcEECCC-CCEEEEECCCCEEEEEeC-CCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCc
Confidence 456677788888999999998 888888889999999998 5666555444567889999999999888877666 6
Q ss_pred eEEEEECCCCcEEEEee---cCCcceEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCCCeeEEE
Q 007855 363 NIKYWDTETGQVIRTFS---TGKIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTIT 433 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~---~~~~~~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~~I~~i~ 433 (587)
.|.+||..++.....+. ....+..+.+.+++ +++++... .+.|..+|..+++..... .+...+.+++
T Consensus 113 ~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~i~ 188 (333)
T 2dg1_A 113 GIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG---GFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII-QNISVANGIA 188 (333)
T ss_dssp EEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS---CEEEEECCCBTTBCCEEEEEECTTSCCEEEEE-EEESSEEEEE
T ss_pred eEEEEeCCCCEEEEEEccCccCCcccceEECCCC---CEEEEeccccccCCCceEEEEeCCCCEEEEee-cCCCcccceE
Confidence 89999998887654332 22334556666643 45554443 356777887665544332 3345688999
Q ss_pred EecCCCEEEEE-ECCCCEEEEECCC-CeEEEE-----e-ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 434 FVDNNRRFVTS-SDDKSLRVWEFGI-PVVIKY-----I-SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 434 ~sp~~~~l~s~-s~Dg~I~iwd~~~-~~~~~~-----~-~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
|+|+++.|+++ +.++.|.+|++.. +..+.. . .......+..++++++|+++++...++.|.+|+... ..+.
T Consensus 189 ~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g-~~~~ 267 (333)
T 2dg1_A 189 LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRG-YPIG 267 (333)
T ss_dssp ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTS-CEEE
T ss_pred ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCCC-CEEE
Confidence 99999866554 4578999999853 221111 1 111124678899999999888888889999999843 3322
Q ss_pred ccceeccccc----ccceEEEEEcCCCCEEEEEcCCC
Q 007855 506 KKKRFAGHIV----AGYACQVNFSPDGRFVMSGDGEG 538 (587)
Q Consensus 506 ~~~~~~~~~~----~~~i~~l~~spdg~~L~sgs~dG 538 (587)
. +..+.. ...+.+++|+|+++.|++++.++
T Consensus 268 ~---~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 268 Q---ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp E---EECTTGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred E---EEcCCCccccccCcceEEECCCCCEEEEEeCcc
Confidence 2 211110 01466799999988877666553
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.58 E-value=1.2e-12 Score=130.42 Aligned_cols=244 Identities=14% Similarity=0.103 Sum_probs=182.0
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccC-CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCC--cce
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPY 385 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--~~~ 385 (587)
+++|++++.++.|.+||. .+++.+..+..+. ..+.++.++|+|++|+ +.++.|..||. +++.+..+..+. ...
T Consensus 5 ~~~lv~~~~~~~v~~~d~-~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~ 80 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINK-DTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQ 80 (276)
T ss_dssp CEEEEECTTCSEEEEEET-TTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEE
T ss_pred CcEEEeeCCCCEEEEEEC-CCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCcccc
Confidence 589999999999999998 7999999998776 5789999999999888 45788999999 899999998753 333
Q ss_pred EEEEccCCCCCcEEEEEeC-CCcEEEEeCCCCcEEEEEcc------CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC
Q 007855 386 VVKLNPDDDKQNILLAGMS-DKKIVQWDMNTKEITQEYDQ------HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP 458 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~-dg~I~iwD~~t~~~~~~~~~------h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~ 458 (587)
.+.+.++ ++++++.+. ++.|..+|. +++.+..+.. +......+.+.++++++++.+.++.|.+||.. +
T Consensus 81 ~~~~~~d---G~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 81 TARILPD---GNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEECTT---SCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred ccEECCC---CCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 4445443 357777776 788888886 6777766542 22345667889999999999999999999998 7
Q ss_pred eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee--cccccccceEEEEEcCCCCEEEEEcC
Q 007855 459 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF--AGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~--~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
+.+..+... ....++...++++++++++.++.|..+|..++..+...... .+. .-..+..++..++|.++++...
T Consensus 156 ~~~w~~~~~--~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~-~l~~~~~~~~~~~G~i~v~~~~ 232 (276)
T 3no2_A 156 QLLNSVKLS--GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGV-QLFFVAQLFPLQNGGLYICNWQ 232 (276)
T ss_dssp CEEEEEECS--SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSC-CCSEEEEEEECTTSCEEEEEEC
T ss_pred CEEEEEECC--CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCc-cccccccceEcCCCCEEEEecc
Confidence 777776542 34567788899999999998889999999877665443321 111 1234677889999998888741
Q ss_pred C--------CcEEEEeC-CCCeeEEEEecCC--CCEEEE
Q 007855 537 E--------GKCWFWDW-KSCKVFRTLKCHE--GVCIGC 564 (587)
Q Consensus 537 d--------G~I~vwd~-~t~~~~~~l~~h~--~~V~~v 564 (587)
. +..+++.+ .+++.+..+..+. +.+.++
T Consensus 233 g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 233 GHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp TTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred CccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 1 23355555 5788888887554 344443
No 189
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.56 E-value=1e-12 Score=134.33 Aligned_cols=232 Identities=13% Similarity=0.159 Sum_probs=155.4
Q ss_pred CCeEEEEEccCCCcEEEEEeCC---C--eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC----------
Q 007855 297 KGVSAIRFFPKYGHLILSAGMD---T--KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD---------- 361 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~D---g--~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D---------- 361 (587)
..+.+++|+|+ |+.|+.++.+ + .|.+|++ ..++.......+ . +..++|+|+|+.|+.++.+
T Consensus 59 ~~~~~~~~SpD-g~~la~~~~~~~~~~~~l~~~~~-~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~ 134 (347)
T 2gop_A 59 ENATMPRISPD-GKKIAFMRANEEKKVSEIWVADL-ETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFE 134 (347)
T ss_dssp ESCEEEEECTT-SSEEEEEEEETTTTEEEEEEEET-TTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC-------
T ss_pred ccCCCeEECCC-CCEEEEEEeccCCCcceEEEEEC-CCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEE
Confidence 46889999999 7877776643 3 4777787 556655444333 3 9999999999999888743
Q ss_pred -----------------CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC---------cEEEEeCCC
Q 007855 362 -----------------KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK---------KIVQWDMNT 415 (587)
Q Consensus 362 -----------------g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg---------~I~iwD~~t 415 (587)
..|.+||+.+++.+..+... ....+.|++++ +++++..++ .|.++| +
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg----~~~~~~~~~~~~~~~~~~~l~~~d--~ 207 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDK----IVVNVPHREIIPQYFKFWDIYIWE--D 207 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTE----EEEEEECCCSSCCSSCCEEEEEEE--T
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCe----EEEEEecccccccccccccEEEeC--C
Confidence 57999999998874444433 55677777643 666665432 455555 5
Q ss_pred CcEEEEEccCCCCeeEEEEecCCCEEEEEECCC--------CEEEEECCCCeEEEEeecCCCcceeE-EEEeCCCCEEEE
Q 007855 416 KEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK--------SLRVWEFGIPVVIKYISEPHMHSMPS-ISLHPNTNWLAA 486 (587)
Q Consensus 416 ~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg--------~I~iwd~~~~~~~~~~~~~~~~~i~~-i~~sp~g~~l~~ 486 (587)
++.. .+..+ ..+..+ +|+|++|+.++.++ .|.+|| ++.. ..+...+...+.. +.|+ ++ ++++
T Consensus 208 ~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 208 GKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp TEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred CceE-EeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-EeccccCCcccCCccEEc-Cc-EEEE
Confidence 5443 33334 555554 99999988887553 577777 4443 4444445667776 8999 88 8899
Q ss_pred EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcE-EEEeCCCCeeEEEEecCCC
Q 007855 487 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKC-WFWDWKSCKVFRTLKCHEG 559 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I-~vwd~~t~~~~~~l~~h~~ 559 (587)
++.++.++|| +.++.. ..+..+ ...+.+++|+| .++++++.++.. .||.+. ++ ...+..|..
T Consensus 279 ~~~~~~~~l~-~~~g~~----~~~~~~--~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~-~~~lt~~n~ 341 (347)
T 2gop_A 279 LFEEGSVNLY-IWDGEI----KPIAKG--RHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE-EKQLTDYND 341 (347)
T ss_dssp EEETTEEEEE-EESSSE----EEEECS--SSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS-EEECCCTTS
T ss_pred EecCCcEEEE-EcCCce----EEEecC--CCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc-EEEeccccH
Confidence 9999999999 874322 122222 35677899999 677777776654 677665 54 444555543
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.56 E-value=1.4e-12 Score=147.37 Aligned_cols=244 Identities=12% Similarity=0.096 Sum_probs=165.9
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCC-----eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe-----
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDT-----KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 363 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg-----~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~----- 363 (587)
+|...+..++|||+ |++|+.++.++ .|++||+ .+++.+.....+. .+..++|+|||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPD-g~~la~~~~~~G~~~~~i~v~d~-~tg~~~~~~~~~~-~~~~~~wspDg~~l~~~~~~~~~~~~~ 198 (710)
T 2xdw_A 122 DGTVALRGYAFSED-GEYFAYGLSASGSDWVTIKFMKV-DGAKELPDVLERV-KFSCMAWTHDGKGMFYNAYPQQDGKSD 198 (710)
T ss_dssp TSCEEEEEEEECTT-SSEEEEEEEETTCSCEEEEEEET-TTTEEEEEEEEEE-CSCCEEECTTSSEEEEEECCCCSSCCS
T ss_pred CCCEEEEEEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCcccccCc-ccceEEEEeCCCEEEEEEECCcccccc
Confidence 45557899999999 78777665433 8999999 6777665433332 3778999999999999988766
Q ss_pred -----------EEEEECCCCcE--EEEeecC---CcceEEEEccCCCCCcEEEEEeC-----CCcEEEEeCCC------C
Q 007855 364 -----------IKYWDTETGQV--IRTFSTG---KIPYVVKLNPDDDKQNILLAGMS-----DKKIVQWDMNT------K 416 (587)
Q Consensus 364 -----------I~vWd~~t~~~--i~~~~~~---~~~~~~~~~~~~~~~~~l~sg~~-----dg~I~iwD~~t------~ 416 (587)
|.+|++.+++. ...+... .....+.+++++. .|+.++. +..|++||+.+ +
T Consensus 199 ~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~---~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 275 (710)
T 2xdw_A 199 GTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR---YVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (710)
T ss_dssp SSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred ccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCC---EEEEEEEccCCCccEEEEEECcccccccCC
Confidence 99999998762 2233322 2234566666543 4444443 56899999986 4
Q ss_pred c-EEEEEccCCCCeeEEEEecCCCEEEEEECCC----CEEEEECCCCeE--EEEeecCCC-cceeEEEEeCCCCEEEEEE
Q 007855 417 E-ITQEYDQHLGAVNTITFVDNNRRFVTSSDDK----SLRVWEFGIPVV--IKYISEPHM-HSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 417 ~-~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg----~I~iwd~~~~~~--~~~~~~~~~-~~i~~i~~sp~g~~l~~~s 488 (587)
. ....+..+...+.. .|++++..|+..+..+ .|.+||+..+.. ...+..... ..+..++|++++.++++..
T Consensus 276 ~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~ 354 (710)
T 2xdw_A 276 ILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYL 354 (710)
T ss_dssp SCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEE
T ss_pred ccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEE
Confidence 3 35556666666655 4888888887776643 599999987631 223332222 3678899998888888888
Q ss_pred CCCe--EEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCe
Q 007855 489 LDNQ--ILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCK 549 (587)
Q Consensus 489 ~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg----s~dG~I~vwd~~t~~ 549 (587)
.++. |.+|++.++..+. .+..+ .+.+..++++|++..|+.. ...+.|++||+.+++
T Consensus 355 ~~g~~~l~~~~~~~g~~~~---~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 355 HDVKNTLQLHDLATGALLK---IFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ETTEEEEEEEETTTCCEEE---EECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ECCEEEEEEEECCCCCEEE---ecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 8885 5566764544332 22333 4567788999999866633 235789999998876
No 191
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=7.2e-13 Score=130.30 Aligned_cols=239 Identities=11% Similarity=0.090 Sum_probs=167.7
Q ss_pred CeEEEEEccCCCcEEE-EEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 298 GVSAIRFFPKYGHLIL-SAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~-sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
...+|+++++ +.+++ +.+.++.|.+|+. ...........+...+.+|+++++|+++++.. ++.|.+||..+....
T Consensus 25 ~p~~i~~~~~-g~l~v~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~- 100 (270)
T 1rwi_B 25 SPSGVAVDSA-GNVYVTSEGMYGRVVKLAT-GSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT- 100 (270)
T ss_dssp CEEEEEECTT-CCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE-
T ss_pred CccceEECCC-CCEEEEccCCCCcEEEecC-CCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe-
Confidence 6789999998 77777 5577899999987 33332222223445788999999998666655 889999998766543
Q ss_pred EeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEE
Q 007855 377 TFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWE 454 (587)
Q Consensus 377 ~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd 454 (587)
.+... ..+..+.+.+++ +++++...++.|.+|+..+.............+.+|++.++++.+++...++.|.+|+
T Consensus 101 ~~~~~~~~~p~~i~~~~~g---~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~ 177 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQG---AVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLE 177 (270)
T ss_dssp ECCCCSCSSEEEEEECTTC---CEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eeecCCcCCCcceEECCCC---CEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEe
Confidence 33222 345566666533 5677767788999998766544333233345688999999998777777788999999
Q ss_pred CCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEE
Q 007855 455 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg 534 (587)
.......... ......+.+++++++|.++++...++.|.+|+........ ... .+ ...+..++++++|+++++.
T Consensus 178 ~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~--~~~-~~--~~~p~~i~~~~~g~l~v~~ 251 (270)
T 1rwi_B 178 AESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV--LPF-TG--LNTPLAVAVDSDRTVYVAD 251 (270)
T ss_dssp TTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE--CCC-CS--CSCEEEEEECTTCCEEEEE
T ss_pred cCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee--ecc-CC--CCCceeEEECCCCCEEEEE
Confidence 8876654332 2233668899999999777777778899999986543221 111 11 1356789999999988898
Q ss_pred cCCCcEEEEeCCCCe
Q 007855 535 DGEGKCWFWDWKSCK 549 (587)
Q Consensus 535 s~dG~I~vwd~~t~~ 549 (587)
..++.|.++++...+
T Consensus 252 ~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 252 RGNDRVVKLTSLEHH 266 (270)
T ss_dssp GGGTEEEEECCCGGG
T ss_pred CCCCEEEEEcCCCcc
Confidence 999999999987654
No 192
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.55 E-value=2.9e-11 Score=120.24 Aligned_cols=274 Identities=11% Similarity=0.054 Sum_probs=187.1
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE-EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~ 372 (587)
.....+.+|++.++ +.++++...++.|.+|+. . ++... .+..+...+.+|++.++|.++++...++.|.+||.. +
T Consensus 17 ~~~~~p~~i~~d~~-g~l~v~~~~~~~v~~~~~-~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g 92 (300)
T 2qc5_A 17 IPDSGPYGITSSED-GKVWFTQHKANKISSLDQ-S-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G 92 (300)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred CCCCCcceeeECCC-CCEEEEcCCCCeEEEECC-C-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence 34567899999998 888888778899999998 3 44433 223344678999999999887777668899999988 6
Q ss_pred cEEEEeec---CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCCEEEEEECCC
Q 007855 373 QVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNRRFVTSSDDK 448 (587)
Q Consensus 373 ~~i~~~~~---~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~~l~s~s~Dg 448 (587)
+.. .+.. ...+..+.+.+. ++++++...++.|..||.. ++.... +......+.++++.++++.+++...++
T Consensus 93 ~~~-~~~~~~~~~~~~~i~~~~~---g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 167 (300)
T 2qc5_A 93 GFT-EYPLPQPDSGPYGITEGLN---GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNN 167 (300)
T ss_dssp CEE-EEECSSTTCCEEEEEECST---TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTT
T ss_pred CeE-EecCCCCCCCCccceECCC---CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCC
Confidence 553 3322 234555666543 3566666668899999988 655432 333456789999999999776666678
Q ss_pred CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCC
Q 007855 449 SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 449 ~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
.|.+|+. .+.............+..+++++++.++++....+.|.+|+.. +.... . ..... ...+..++++++|
T Consensus 168 ~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~~~~-~-~~~~~--~~~~~~i~~d~~g 241 (300)
T 2qc5_A 168 SIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITTT-GEISE-Y-DIPTP--NARPHAITAGKNS 241 (300)
T ss_dssp EEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT-CCEEE-E-ECSST--TCCEEEEEECSTT
T ss_pred eEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcCC-CcEEE-E-ECCCC--CCCceEEEECCCC
Confidence 8999998 4444432222334568899999999877776667889999983 32211 1 11111 2456789999999
Q ss_pred CEEEEEcCCCcEEEEeCCCCeeEE-EEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 529 RFVMSGDGEGKCWFWDWKSCKVFR-TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 529 ~~L~sgs~dG~I~vwd~~t~~~~~-~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++.++...++.|..|+. +++... .+......+.++++.+ ++.++++.. . .|..+
T Consensus 242 ~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~-~-~i~~~ 296 (300)
T 2qc5_A 242 EIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGK-DGSVWFALK-C-KIGKL 296 (300)
T ss_dssp CEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECT-TSCEEEECS-S-EEEEE
T ss_pred CEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCC-CCCEEEEcc-C-ceEEe
Confidence 97777777889999998 454332 2233345678899998 555555443 4 55544
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.55 E-value=2.9e-11 Score=125.72 Aligned_cols=269 Identities=9% Similarity=-0.034 Sum_probs=181.4
Q ss_pred ccCCCcEEEEEeC--CC---eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe----------CCCeEEEEEC
Q 007855 305 FPKYGHLILSAGM--DT---KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDT 369 (587)
Q Consensus 305 sp~~g~~L~sgs~--Dg---~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s----------~Dg~I~vWd~ 369 (587)
.|+ +++++++.. .. +|.++|. .+++.+.++.....+ .++|+|||++|+++. .++.|.+||+
T Consensus 29 ~~~-~~~~yv~~~~~~~~~~~v~v~D~-~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~ 104 (373)
T 2mad_H 29 GAD-GRRSYINLPAHHSAIIQQWVLDA-GSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP 104 (373)
T ss_pred CCC-CCEEEEeCCcccCCccEEEEEEC-CCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence 345 566666543 22 8899999 678888777654444 999999999999886 3678999999
Q ss_pred CCCcEEEEeecC--------CcceEEEEccCCCCCcEEEEEe-C-CCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCC
Q 007855 370 ETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNN 438 (587)
Q Consensus 370 ~t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~l~sg~-~-dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~ 438 (587)
.+.+.+..+..+ ..+..+.++|++. .|+++. . ++.|.++| .+++.+.. +... + |+.+.|.+
T Consensus 105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~---~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~ 176 (373)
T 2mad_H 105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNA---DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGA 176 (373)
T ss_pred CCCcEEEEEECCCccccccCCCccceEECCCCC---EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCC
Confidence 999998887654 3455678888653 455554 3 57899999 99998877 5432 2 24455554
Q ss_pred -CEEEEEECCCCEEEEECCCCeEEEEeec----CCCcc-eeEEEEeCCCCEEEEEECCCeEEEEEcCCcee--eccccee
Q 007855 439 -RRFVTSSDDKSLRVWEFGIPVVIKYISE----PHMHS-MPSISLHPNTNWLAAQSLDNQILIYSTRERFQ--LNKKKRF 510 (587)
Q Consensus 439 -~~l~s~s~Dg~I~iwd~~~~~~~~~~~~----~~~~~-i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~ 510 (587)
+.+++.+.||.+.++|. ++........ ....+ .....+.+++..++..+..+.|.+.|+..... +......
T Consensus 177 ~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~ 255 (373)
T 2mad_H 177 PSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDAL 255 (373)
T ss_pred CceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeec
Confidence 45677888999999999 7766533210 11111 12345566665555555788999999865421 1111000
Q ss_pred cc-----cccccceEEEEEcCCCCEEEEEcC----------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEE
Q 007855 511 AG-----HIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVA 575 (587)
Q Consensus 511 ~~-----~~~~~~i~~l~~spdg~~L~sgs~----------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~ 575 (587)
.. .........+.++|+++.|++... .+.|.++|..+++.+.++.... ...+++|+|++..+|+
T Consensus 256 ~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~-~p~~i~~s~Dg~~~l~ 334 (373)
T 2mad_H 256 SGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGH-DVDAISVAQDGGPDLY 334 (373)
T ss_pred CCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCC-CcCeEEECCCCCeEEE
Confidence 00 000122334789999998877643 3579999999999999996433 5789999994433777
Q ss_pred EEE-CCCcEEEcC
Q 007855 576 TCG-WDGLIKYWD 587 (587)
Q Consensus 576 s~g-~DG~I~iWD 587 (587)
++. .++.|.+||
T Consensus 335 v~~~~~~~V~ViD 347 (373)
T 2mad_H 335 ALSAGTEVLHIYD 347 (373)
T ss_pred EEcCCCCeEEEEE
Confidence 777 489999987
No 194
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.53 E-value=1.4e-12 Score=128.15 Aligned_cols=235 Identities=6% Similarity=-0.001 Sum_probs=162.3
Q ss_pred ceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE
Q 007855 342 AVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 419 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~ 419 (587)
...+|+++++|++++ +.+.++.|.+|+..++....... ....+..+++.+++ +++++.. ++.|.+||.......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g---~l~v~~~-~~~i~~~d~~~~~~~ 100 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAG---TVYVTDF-NNRVVTLAAGSNNQT 100 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTC---CEEEEET-TTEEEEECTTCSCCE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCC---CEEEEcC-CCEEEEEeCCCceEe
Confidence 678999999998777 54678999999986654332211 22345667776643 4555544 889999998776543
Q ss_pred EEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 420 QEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 420 ~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
.........+.++++.++++.+++...++.|.+|+.......... ......+.+++++++++++++...++.|.+|+..
T Consensus 101 ~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 101 VLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP-FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp ECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC-CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTT
T ss_pred eeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec-cccCCCceeEEEeCCCCEEEEECCCCEEEEEecC
Confidence 222233367899999999987777777889999987655433222 2233467889999999977777778899999987
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
....... .. .. ...+..++++++|.++++...++.|.+|+............+...+.++++++ ++.++++...
T Consensus 180 ~~~~~~~--~~-~~--~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~~ 253 (270)
T 1rwi_B 180 SNNQVVL--PF-TD--ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS-DRTVYVADRG 253 (270)
T ss_dssp TCCEEEC--CC-SS--CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECT-TCCEEEEEGG
T ss_pred CCceEee--cc-cC--CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECC-CCCEEEEECC
Confidence 6543211 11 11 14566799999998888887889999999876544332223445689999999 5678888888
Q ss_pred CCcEEEcC
Q 007855 580 DGLIKYWD 587 (587)
Q Consensus 580 DG~I~iWD 587 (587)
++.|++++
T Consensus 254 ~~~v~~~~ 261 (270)
T 1rwi_B 254 NDRVVKLT 261 (270)
T ss_dssp GTEEEEEC
T ss_pred CCEEEEEc
Confidence 99999985
No 195
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=2.1e-13 Score=153.80 Aligned_cols=241 Identities=9% Similarity=-0.028 Sum_probs=157.0
Q ss_pred ccCCceeeEEEecCCCeEE-----EEeCCCeEEEEECCCCcEE-EEeecCCcceEEEEccCCCCCcEEEEEeCCCc----
Q 007855 338 GHSKAVRDISFCNDGTKFL-----TASYDKNIKYWDTETGQVI-RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK---- 407 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~-----s~s~Dg~I~vWd~~t~~~i-~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~---- 407 (587)
+|...+..++|||||++|+ .|+.+..|++||+.+++.+ ...........+.|++++. .|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~---~l~~~~~d~~~~~~ 194 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSK---GFYYEWLPTDPSIK 194 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSS---EEEEEECCCCTTSC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCC---EEEEEEecCCCCCc
Confidence 3555799999999999998 3444578999999999865 2111111124677887653 5777777665
Q ss_pred ---------EEEEeCCCCc----EEEEEccCCCCeeEEEEecCCCEEEEEECCC----CEEEEECCCCeEEEEeecCCCc
Q 007855 408 ---------IVQWDMNTKE----ITQEYDQHLGAVNTITFVDNNRRFVTSSDDK----SLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 408 ---------I~iwD~~t~~----~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg----~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
|++|++.++. ++.....+...+.++.|+|+|++|+.++.++ .|.+|+...+.... +.. +..
T Consensus 195 ~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~-~~~ 272 (695)
T 2bkl_A 195 VDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVK-GVG 272 (695)
T ss_dssp GGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEE-CSS
T ss_pred cccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eec-CCC
Confidence 9999999876 3333334556889999999999998887666 67777665443332 222 333
Q ss_pred ceeEEEEeCCCCEEEEEEC----CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 471 SMPSISLHPNTNWLAAQSL----DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
.+....+ +++. |+..+. ++.|.+|++.++.... ...+..+.....+..++|+ ++.++++...++..+||.+.
T Consensus 273 ~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~-~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 273 AKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARAS-WKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp CCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGG-CEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred ceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccC-CeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 4455555 5566 554443 5789999987653210 1122222213346678888 77788899999988877654
Q ss_pred -CCeeEEEEecC-CCCEEEEEEcCCCCCEEEEEEC---CCcEEEcC
Q 007855 547 -SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 587 (587)
Q Consensus 547 -t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~---DG~I~iWD 587 (587)
+++....+..+ .+.|..+.++|++..++++.+. .++|++||
T Consensus 349 ~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d 394 (695)
T 2bkl_A 349 LKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTS 394 (695)
T ss_dssp TTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEE
T ss_pred CCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 46666667665 5677888899844444444433 46788775
No 196
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.52 E-value=5.9e-11 Score=123.35 Aligned_cols=252 Identities=7% Similarity=-0.046 Sum_probs=173.5
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEe----------CCCeEEEEecCCCCeeeEEEccc-------CCceeeEEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDISF 348 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f 348 (587)
.+++.++..-..+ .++++|+ +++|+.+. .++.|.+||. .+.+.+..+.-. ...-..+.|
T Consensus 57 ~~~~~~i~~g~~p--~i~~spD-g~~lyv~n~~~~~~~rg~~~~~v~viD~-~t~~~~~~i~~~~~~~~~~g~~p~~~~~ 132 (373)
T 2mad_H 57 GSILGHVNGGFLP--NPVAAHS-GSEFALASTSFSRIAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFDVGPYSWMNAN 132 (373)
T ss_pred CeEEEEecCCCCC--CeEECCC-CCEEEEEeccccccccCCCCCeEEEEEC-CCCcEEEEEECCCccccccCCCccceEE
Confidence 3455666544444 9999999 77777765 3688999999 677766665321 123458999
Q ss_pred ecCCCeEEEEeC--CCeEEEEECCCCcEEEE-eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc--
Q 007855 349 CNDGTKFLTASY--DKNIKYWDTETGQVIRT-FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD-- 423 (587)
Q Consensus 349 s~dg~~l~s~s~--Dg~I~vWd~~t~~~i~~-~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~-- 423 (587)
+|||++|++++. ++.|.++| .+++.+.. +..+. ++.+.+.+. ..+++.+.||.+.++|+ +++.+....
T Consensus 133 spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~---~~~~~~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~ 205 (373)
T 2mad_H 133 TPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT---CYHIHPGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVG 205 (373)
T ss_pred CCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc---eEEEEeCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEecc
Confidence 999999999874 47899999 99999888 76543 244445443 46778888999999999 887664322
Q ss_pred ---cCCCCe-eEEEEecCCCEEEEEECCCCEEEEECCCCe--EEEEeecC---------CCcceeEEEEeCCCCEEEEEE
Q 007855 424 ---QHLGAV-NTITFVDNNRRFVTSSDDKSLRVWEFGIPV--VIKYISEP---------HMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 424 ---~h~~~I-~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~~---------~~~~i~~i~~sp~g~~l~~~s 488 (587)
....++ ....+.+++..++..+..+.|.+.|+.... .+..+... .......+.++|+++.+++..
T Consensus 206 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~ 285 (373)
T 2mad_H 206 AMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLT 285 (373)
T ss_pred ccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEe
Confidence 111221 234566666665555578899999986542 22222110 112234478899998888765
Q ss_pred C----------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007855 489 L----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 489 ~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sgs-~dG~I~vwd~~t~~~~~~l 554 (587)
. .+.|.++|+.+...+..+.. ......++|+|||+ +++++. .++.|.+||+.+++.+..+
T Consensus 286 ~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 286 SEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 3 35799999988766544421 22355699999999 777776 5899999999999998884
No 197
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.52 E-value=5.1e-12 Score=130.55 Aligned_cols=271 Identities=14% Similarity=0.062 Sum_probs=184.2
Q ss_pred ccCCCcEEEEEeC-----CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe----------CCCeEEEEEC
Q 007855 305 FPKYGHLILSAGM-----DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDT 369 (587)
Q Consensus 305 sp~~g~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s----------~Dg~I~vWd~ 369 (587)
.|+ ++.++.... ++.|.+.|. .+++.+.++.....+ .++++|||++|++++ .++.|.+||+
T Consensus 41 ~pd-~~~vyV~~~~~~~~~~~V~ViD~-~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 41 APD-ARRVYVNDPAHFAAVTQQFVIDG-EAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCC-TTEEEEEECGGGCSSEEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCC-CCEEEEEcCcccCCCCEEEEEEC-CCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 455 555555543 689999999 788888888755555 499999999998876 3678999999
Q ss_pred CCCcEEEEeecC--------CcceEEEEccCCCCCcEEEEEe-C-CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCC
Q 007855 370 ETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNR 439 (587)
Q Consensus 370 ~t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~l~sg~-~-dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~ 439 (587)
.+++.+..+..+ ..+..+.+++++. .++++. . ++.|.++|+.+++.+.++.... + ...+....+
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk---~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~g~~ 190 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK---TLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPTAPD 190 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEEETT
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCC---EEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecCCCc
Confidence 999999988654 2567788888653 455554 3 6899999999999998885322 1 223333556
Q ss_pred EEEEEECCCCEEEEECCC-CeEEEEee---cCCCcce-eEEEEe-CCCCEEEEEECCCeEEEEEcCCcee--ecccceec
Q 007855 440 RFVTSSDDKSLRVWEFGI-PVVIKYIS---EPHMHSM-PSISLH-PNTNWLAAQSLDNQILIYSTRERFQ--LNKKKRFA 511 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~-~~~~~~~~---~~~~~~i-~~i~~s-p~g~~l~~~s~dg~I~iwd~~~~~~--~~~~~~~~ 511 (587)
.|++.+.||.+.+.++.. ++...... .....++ ....|. ++|++++ .+.+|.|+++|+.+... ......+.
T Consensus 191 ~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~ 269 (386)
T 3sjl_D 191 TFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALT 269 (386)
T ss_dssp EEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSC
T ss_pred eeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccc
Confidence 788889999999999976 44322111 1111222 224554 5665544 56689999999865431 11111010
Q ss_pred -----ccccccceEEEEEcCCCCEEEEEcC----------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 512 -----GHIVAGYACQVNFSPDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 512 -----~~~~~~~i~~l~~spdg~~L~sgs~----------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
..........++++++++.|+.... ...|.++|+.+++.+..+.... .+.+|++++++..+|++
T Consensus 270 ~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~-~~~~lavs~D~~~~ly~ 348 (386)
T 3sjl_D 270 EAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH-EIDSINVSQDEKPLLYA 348 (386)
T ss_dssp HHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECSSSSCEEEE
T ss_pred cccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC-CcceEEECCCCCeEEEE
Confidence 0111122234788999998887643 2479999999999999987433 67899999955446666
Q ss_pred E-ECCCcEEEcC
Q 007855 577 C-GWDGLIKYWD 587 (587)
Q Consensus 577 ~-g~DG~I~iWD 587 (587)
+ ..++.|.++|
T Consensus 349 tn~~~~~VsViD 360 (386)
T 3sjl_D 349 LSTGDKTLYIHD 360 (386)
T ss_dssp EETTTTEEEEEE
T ss_pred EcCCCCeEEEEE
Confidence 4 5589999886
No 198
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.51 E-value=8.7e-12 Score=124.08 Aligned_cols=212 Identities=10% Similarity=0.027 Sum_probs=163.8
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-C
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-G 427 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-~ 427 (587)
.++.|++++.++.|.+||.++|+.+..+..+. .+..+.+.+++ ++++ +.++.|..||. +++.+..+..+. .
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG---~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~ 77 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG---EILF--SYSKGAKMITR-DGRELWNIAAPAGC 77 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS---CEEE--ECBSEEEEECT-TSCEEEEEECCTTC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC---CEEE--eCCCCEEEECC-CCCEEEEEcCCCCc
Confidence 46789999999999999999999999998765 46677777754 4566 45788999999 899999888653 5
Q ss_pred CeeEEEEecCCCEEEEEEC-CCCEEEEECCCCeEEEEeecC-----CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCc
Q 007855 428 AVNTITFVDNNRRFVTSSD-DKSLRVWEFGIPVVIKYISEP-----HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER 501 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~-Dg~I~iwd~~~~~~~~~~~~~-----~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~ 501 (587)
.+.++.+.++|+++++.+. ++.|..+|. .++.+..+... +......+++.++|++|++.+.++.|.+||.. +
T Consensus 78 ~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G 155 (276)
T 3no2_A 78 EMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-G 155 (276)
T ss_dssp EEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred cccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-C
Confidence 7889999999999999887 777888876 45555544321 11235567789999999999999999999987 5
Q ss_pred eeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC------CCEEEEEEcCCCCCEEE
Q 007855 502 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE------GVCIGCEWHPLEQSKVA 575 (587)
Q Consensus 502 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~------~~V~~v~~sp~~~~~l~ 575 (587)
..+..... . .....+.+.++|++|+++..+++|..+|..+|+.+.++..+. ..+.++...+ ++.+++
T Consensus 156 ~~~w~~~~---~---~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~-~G~i~v 228 (276)
T 3no2_A 156 QLLNSVKL---S---GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ-NGGLYI 228 (276)
T ss_dssp CEEEEEEC---S---SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT-TSCEEE
T ss_pred CEEEEEEC---C---CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC-CCCEEE
Confidence 54433222 1 223357788999999999999999999999999999987542 2277888888 666666
Q ss_pred EE
Q 007855 576 TC 577 (587)
Q Consensus 576 s~ 577 (587)
+.
T Consensus 229 ~~ 230 (276)
T 3no2_A 229 CN 230 (276)
T ss_dssp EE
T ss_pred Ee
Confidence 66
No 199
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.50 E-value=6.5e-12 Score=126.20 Aligned_cols=241 Identities=12% Similarity=0.127 Sum_probs=161.6
Q ss_pred ccCCceeeEEEecCCCeEEE-------EeCCCeEEEEECCCCcEEEEee-----cCCcceEEEEccCCCCCcEEEEEeCC
Q 007855 338 GHSKAVRDISFCNDGTKFLT-------ASYDKNIKYWDTETGQVIRTFS-----TGKIPYVVKLNPDDDKQNILLAGMSD 405 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg~~l~s-------~s~Dg~I~vWd~~t~~~i~~~~-----~~~~~~~~~~~~~~~~~~~l~sg~~d 405 (587)
..-....+++|+++|.++++ ...++.|.+||..+++...... ....+..+.+.++ .++ +++++..
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~--~g~-l~v~~~~ 91 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRD--ANQ-LFVADMR 91 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSS--SSE-EEEEETT
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecC--CCc-EEEEECC
Confidence 34456789999999988877 5778999999998887654322 1234455555554 124 4445445
Q ss_pred CcEEEEeCCCCcEEEE-Ecc----CCCCeeEEEEecCCCEEEEEECC---------------CCEEEEECCCCeEEEEee
Q 007855 406 KKIVQWDMNTKEITQE-YDQ----HLGAVNTITFVDNNRRFVTSSDD---------------KSLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~-~~~----h~~~I~~i~~sp~~~~l~s~s~D---------------g~I~iwd~~~~~~~~~~~ 465 (587)
+.|.+||.. ++.... ... ....+.++++.++++++++...+ +.|..|+.. +......
T Consensus 92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~- 168 (314)
T 1pjx_A 92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD- 168 (314)
T ss_dssp TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-
T ss_pred CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-
Confidence 589999998 765433 221 12458899999999887776654 467777765 4433222
Q ss_pred cCCCcceeEEEEe----CCCCEEEEE-ECCCeEEEEEcC-Cceeec--ccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 466 EPHMHSMPSISLH----PNTNWLAAQ-SLDNQILIYSTR-ERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 466 ~~~~~~i~~i~~s----p~g~~l~~~-s~dg~I~iwd~~-~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
........++++ |+++.|+++ ..++.|.+|++. .+.... ....+.++. ......++++++|+++++...+
T Consensus 169 -~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~-~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 169 -TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH-EGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS-SCEEEEEEEBTTCCEEEEEETT
T ss_pred -cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC-CCCCCceEECCCCCEEEEEcCC
Confidence 123345788999 999766555 467899999976 332110 111122110 0345679999999988888788
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCC-EEEEEECCCcEEEcC
Q 007855 538 GKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCGWDGLIKYWD 587 (587)
Q Consensus 538 G~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g~DG~I~iWD 587 (587)
+.|.+||..+++.+..+..+...+.+++|++ ++. ++++...++.|..||
T Consensus 247 ~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~ 296 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKP-QTKTIFVTEHENNAVWKFE 296 (314)
T ss_dssp TEEEEECTTCBSCSEEEECSSSCEEEEEECT-TSSEEEEEETTTTEEEEEE
T ss_pred CEEEEEcCCCCcEeEEEeCCCCCceeEEECC-CCCEEEEEeCCCCeEEEEe
Confidence 8999999988888778877778899999998 566 455555567787764
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.50 E-value=1.5e-11 Score=127.11 Aligned_cols=266 Identities=11% Similarity=0.067 Sum_probs=182.5
Q ss_pred CceEEEEcCCCCCeEEEEEccCCCcEEEEEe----------CCCeEEEEecCCCCeeeEEEccc-------CCceeeEEE
Q 007855 286 KRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDISF 348 (587)
Q Consensus 286 ~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f 348 (587)
.+++.++..-..+ .|+++|+ +++|++++ .++.|.+||. .+.+.+..+.-. ...-..++|
T Consensus 69 ~~v~~~I~vG~~P--~va~spD-G~~lyVan~~~~r~~~G~~~~~VsviD~-~t~~v~~~I~v~~g~r~~~g~~P~~~a~ 144 (386)
T 3sjl_D 69 GRVIGMIDGGFLP--NPVVADD-GSFIAHASTVFSRIARGERTDYVEVFDP-VTLLPTADIELPDAPRFLVGTYPWMTSL 144 (386)
T ss_dssp TEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGEEE
T ss_pred CeEEEEEECCCCC--cEEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCeEEEEEECCCccccccCCCCceEEE
Confidence 4566666644444 4999999 67666554 3678999999 778887776422 124678999
Q ss_pred ecCCCeEEEEeC--CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-CcEEEEEccC
Q 007855 349 CNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-KEITQEYDQH 425 (587)
Q Consensus 349 s~dg~~l~s~s~--Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-~~~~~~~~~h 425 (587)
+|||++|+++.. ++.|.++|+.+++.+.++..... ..+.|.+ .+.+++.+.||.+.+.++.+ ++.......+
T Consensus 145 spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~g--~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~ 219 (386)
T 3sjl_D 145 TPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPTA--PDTFFMHCRDGSLAKVAFGTEGTPEITHTEV 219 (386)
T ss_dssp CTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEE--TTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecCC--CceeEEECCCCCEEEEECCCCCeEEEeecce
Confidence 999999998874 68999999999999999976542 3334433 35677889999999999986 5654322212
Q ss_pred C----CCe-eEEEEe-cCCCEEEEEECCCCEEEEECCCCe--EEEEeec---------CCCcceeEEEEeCCCCEEEEEE
Q 007855 426 L----GAV-NTITFV-DNNRRFVTSSDDKSLRVWEFGIPV--VIKYISE---------PHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 426 ~----~~I-~~i~~s-p~~~~l~s~s~Dg~I~iwd~~~~~--~~~~~~~---------~~~~~i~~i~~sp~g~~l~~~s 488 (587)
. .++ ....|. ++|++++ .+.+|.|++.|+.... .+..+.. ........++++++++.+++..
T Consensus 220 ~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~ 298 (386)
T 3sjl_D 220 FHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV 298 (386)
T ss_dssp CSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred eccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence 1 222 124565 5665444 6668999999997653 3322210 0122344578899998888865
Q ss_pred C----------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEE-cCCCcEEEEeCCCCeeEEEEec
Q 007855 489 L----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSG-DGEGKCWFWDWKSCKVFRTLKC 556 (587)
Q Consensus 489 ~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sg-s~dG~I~vwd~~t~~~~~~l~~ 556 (587)
. .+.|.++|+.+...+..+.. ...+..|++++|++ +|++. ..++.|.++|..+++.+.++..
T Consensus 299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v------g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~ 372 (386)
T 3sjl_D 299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEM------GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQ 372 (386)
T ss_dssp EECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECC
T ss_pred ccccccccCCCCCEEEEEECCCCeEEEEEEC------CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecC
Confidence 3 25799999998876654433 23455799999997 66664 4589999999999999999875
Q ss_pred CCCCEEEEEEcC
Q 007855 557 HEGVCIGCEWHP 568 (587)
Q Consensus 557 h~~~V~~v~~sp 568 (587)
-.. -+.+.+++
T Consensus 373 ~~~-p~~l~~s~ 383 (386)
T 3sjl_D 373 LGH-GPQVITTA 383 (386)
T ss_dssp CCS-SCCEEEEC
T ss_pred CCC-CceeEECC
Confidence 433 23455554
No 201
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.50 E-value=6.5e-13 Score=149.74 Aligned_cols=242 Identities=13% Similarity=0.044 Sum_probs=157.9
Q ss_pred CCCCCeEEEEEccCCCcEEE-----EEeCCCeEEEEecCCCCeeeEEEcccCCce--eeEEEecCCCeEEEEeCCCe---
Q 007855 294 GHTKGVSAIRFFPKYGHLIL-----SAGMDTKVKIWDVFNSGKCMRTYMGHSKAV--RDISFCNDGTKFLTASYDKN--- 363 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~-----sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V--~~l~fs~dg~~l~s~s~Dg~--- 363 (587)
+|...+.+++|||+ |++|| +|+.+.+|++||+ .+++.+. ..+...+ ..++|+|||+.|+.++.|..
T Consensus 118 ~~~~~~~~~~~SPD-G~~la~~~~~~G~~~~~i~v~dl-~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~ 193 (695)
T 2bkl_A 118 DGTVSLGTWAVSWD-GKKVAFAQKPNAADEAVLHVIDV-DSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSI 193 (695)
T ss_dssp SSCEEEEEEEECTT-SSEEEEEEEETTCSCCEEEEEET-TTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTS
T ss_pred CCCEEEEEEEECCC-CCEEEEEECCCCCceEEEEEEEC-CCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCC
Confidence 56667999999999 78777 4444578999999 6666541 1122223 68999999999999998876
Q ss_pred ----------EEEEECCCCc--EEEEeec--C-CcceEEEEccCCCCCcEEEEEeCCC----cEEEEeCCCCcEEEEEcc
Q 007855 364 ----------IKYWDTETGQ--VIRTFST--G-KIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTKEITQEYDQ 424 (587)
Q Consensus 364 ----------I~vWd~~t~~--~i~~~~~--~-~~~~~~~~~~~~~~~~~l~sg~~dg----~I~iwD~~t~~~~~~~~~ 424 (587)
|++|++.+++ ....+.. + .....+.+++++. .|+.++.++ .|++|+..++... .+..
T Consensus 194 ~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~---~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~ 269 (695)
T 2bkl_A 194 KVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK---YLFVYILRGWSENDVYWKRPGEKDFR-LLVK 269 (695)
T ss_dssp CGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC---CEEEEEEETTTEEEEEEECTTCSSCE-EEEE
T ss_pred ccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC---EEEEEEeCCCCceEEEEEcCCCCceE-Eeec
Confidence 9999999886 2233322 1 2344566776553 344444444 7788877666543 3444
Q ss_pred CCCCeeEEEEecCCCEEEEEEC----CCCEEEEECCCCeE--EEEeecCC-CcceeEEEEeCCCCEEEEEECCCeEEEEE
Q 007855 425 HLGAVNTITFVDNNRRFVTSSD----DKSLRVWEFGIPVV--IKYISEPH-MHSMPSISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s~----Dg~I~iwd~~~~~~--~~~~~~~~-~~~i~~i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
+...+....+ +++. |+..+. ++.|.+||+.++.. ...+...+ ...+..++++ ++.++++...++..+||.
T Consensus 270 ~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 346 (695)
T 2bkl_A 270 GVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRV 346 (695)
T ss_dssp CSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred CCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 5556666666 5666 554443 57899999977642 12232223 4567888888 677888888899888886
Q ss_pred cC-CceeecccceecccccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCee
Q 007855 498 TR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCKV 550 (587)
Q Consensus 498 ~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg----s~dG~I~vwd~~t~~~ 550 (587)
+. .+..... +..+ ..+.+..++++|++..|+.. ...+.|++||+.+++.
T Consensus 347 ~~~~g~~~~~---l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 347 ATLKGKPVRT---VQLP-GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EETTCCEEEE---CCCS-SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EeCCCCeeEE---ecCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 54 2222211 2111 12455668889999877633 3357899999988763
No 202
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.49 E-value=1.1e-10 Score=115.81 Aligned_cols=240 Identities=10% Similarity=0.053 Sum_probs=164.3
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE-EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~ 372 (587)
.+...+.+|++.++ +.++++...++.|..|+. . +.... .+......+.+|++.++|.++++...++.|.+||. ++
T Consensus 54 ~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g 129 (299)
T 2z2n_A 54 TPDAKVMCLTISSD-GEVWFTENAANKIGRITK-K-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DG 129 (299)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TC
T ss_pred cccCceeeEEECCC-CCEEEeCCCCCeEEEECC-C-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CC
Confidence 35578999999998 888888777899999997 3 33322 22234567899999999988887777889999998 66
Q ss_pred cEEEEee--cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 373 QVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 373 ~~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
+...... ....+..+.+.+++ +++++...++.|..||. +++.... +..+...+.++++.+++..+++...++.
T Consensus 130 ~~~~~~~~~~~~~~~~i~~~~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 205 (299)
T 2z2n_A 130 KIREYELPNKGSYPSFITLGSDN---ALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK 205 (299)
T ss_dssp CEEEEECSSTTCCEEEEEECTTS---CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CEEEecCCCCCCCCceEEEcCCC---CEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce
Confidence 5543322 22344556665533 56666666789999999 6665443 3334567889999999987777667889
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
|.+|+. ++.............+.+++++++|.++++...++.|.+|+.. +. +... ..... ...+.++++ ++|.
T Consensus 206 i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~-g~-~~~~-~~~~~--~~~~~~i~~-~~g~ 278 (299)
T 2z2n_A 206 IGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTSN-NI-IEEY-PIQIK--SAEPHGICF-DGET 278 (299)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEETT-TE-EEEE-ECSSS--SCCEEEEEE-CSSC
T ss_pred EEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECCC-Cc-eEEE-eCCCC--CCccceEEe-cCCC
Confidence 999999 5554332222244678899999999866666578999999984 32 2111 11111 245677888 8888
Q ss_pred EEEEEcCCCcEEEEeCCCCe
Q 007855 530 FVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 530 ~L~sgs~dG~I~vwd~~t~~ 549 (587)
+.++.. .+.|..++..+.+
T Consensus 279 l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 279 IWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EEEEET-TTEEEEEEEC---
T ss_pred EEEEec-CCcEEEEEcCccc
Confidence 777665 5677778876543
No 203
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.46 E-value=1e-11 Score=140.96 Aligned_cols=238 Identities=11% Similarity=0.051 Sum_probs=153.7
Q ss_pred cCCceeeEEEecCCCeEEEEeCC-----CeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC-------
Q 007855 339 HSKAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK------- 406 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s~D-----g~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg------- 406 (587)
|...+..++|||||++|+.++.+ ..|++||+.+++.+...........+.|+++ . .|+.+..++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD-~---~l~~~~~~~~~~~~~~ 236 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN-D---ALLYSRFAEPKEGQAF 236 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT-S---EEEEEECCCC------
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC-C---EEEEEEecCccccccc
Confidence 33478899999999999887654 4699999999987654221111234567765 3 355554443
Q ss_pred -------cEEEEeCCCCcE--EEEEc--cCCCCeeEEEEecCCCEEEEEECCC-----CEEEEECCCC--eEEEEeecCC
Q 007855 407 -------KIVQWDMNTKEI--TQEYD--QHLGAVNTITFVDNNRRFVTSSDDK-----SLRVWEFGIP--VVIKYISEPH 468 (587)
Q Consensus 407 -------~I~iwD~~t~~~--~~~~~--~h~~~I~~i~~sp~~~~l~s~s~Dg-----~I~iwd~~~~--~~~~~~~~~~ 468 (587)
.|++|++.++.. ...+. .+...+.++.|+|+|++|+..+.++ .|++||+.++ .....+.. +
T Consensus 237 ~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~ 315 (741)
T 1yr2_A 237 QALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-D 315 (741)
T ss_dssp --CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-S
T ss_pred ccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-C
Confidence 389999987752 23333 3334688999999999988887554 7999999776 31333433 3
Q ss_pred CcceeEEEEeCCCCEEEEEECC----CeEEEEEcCCce-eecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007855 469 MHSMPSISLHPNTNWLAAQSLD----NQILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 469 ~~~i~~i~~sp~g~~l~~~s~d----g~I~iwd~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vw 543 (587)
...+... ++|+|+.|+..+.+ +.|.+|++.+.. ... ..+..+ ...+..++++ ++.++++...+|..+||
T Consensus 316 ~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~--~l~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 389 (741)
T 1yr2_A 316 LKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFD--TVVPES--KDNLESVGIA-GNRLFASYIHDAKSQVL 389 (741)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEE--EEECCC--SSEEEEEEEE-BTEEEEEEEETTEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccE--EEecCC--CCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 3333333 34889988888764 459999987642 211 112222 2335567777 66778888888887776
Q ss_pred eCC-CCeeEEEEecC-CCCEEEEEEcCCCCCEEEEEEC---CCcEEEcC
Q 007855 544 DWK-SCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGW---DGLIKYWD 587 (587)
Q Consensus 544 d~~-t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~---DG~I~iWD 587 (587)
.+. ++.....+..+ .+.|..+.++|++..++++.+. .++|.+||
T Consensus 390 ~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d 438 (741)
T 1yr2_A 390 AFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALD 438 (741)
T ss_dssp EEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEE
T ss_pred EEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEE
Confidence 554 46666666653 5678899999955545555443 36777775
No 204
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.45 E-value=1.5e-10 Score=116.13 Aligned_cols=233 Identities=12% Similarity=0.081 Sum_probs=155.6
Q ss_pred ccCCceeeEEEecCC-CeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 338 GHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 338 ~h~~~V~~l~fs~dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
.+..-..+..|++++ .++++...++.|..||..+++. ..+.....+..+.+.+++ + ++++. ++.|.+||..++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG---~-l~v~~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSG---G-YVATI-GTKFCALNWKEQ 83 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTS---S-EEEEE-TTEEEEEETTTT
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE-EEEeCCCceEEEEECCCC---C-EEEEE-CCeEEEEECCCC
Confidence 344456688999954 4556666789999999998775 445555666777777654 3 44444 578999999888
Q ss_pred cEEEEEcc----CCCCeeEEEEecCCCEEEEEECC---------CCEEEEECCC-CeEEEEeecCCCcceeEEEEeCCCC
Q 007855 417 EITQEYDQ----HLGAVNTITFVDNNRRFVTSSDD---------KSLRVWEFGI-PVVIKYISEPHMHSMPSISLHPNTN 482 (587)
Q Consensus 417 ~~~~~~~~----h~~~I~~i~~sp~~~~l~s~s~D---------g~I~iwd~~~-~~~~~~~~~~~~~~i~~i~~sp~g~ 482 (587)
+....... ....++.+++.|+|+++++.... ..-.||.+.. +.... +. ........++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg~ 161 (297)
T 3g4e_A 84 SAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSLDHK 161 (297)
T ss_dssp EEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECTTSC
T ss_pred cEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcCCCC
Confidence 65443322 12457899999999977655332 2345555543 22222 21 1333467899999998
Q ss_pred EEEEE-ECCCeEEEEEcC--Cceeec--ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC
Q 007855 483 WLAAQ-SLDNQILIYSTR--ERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH 557 (587)
Q Consensus 483 ~l~~~-s~dg~I~iwd~~--~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h 557 (587)
.|+++ +.++.|.+|++. ++.... ....+.. ..+....++++++|++.++....+.|.+||..+++.+..+..+
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~--~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p 239 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEK--EEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP 239 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCG--GGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCC--CCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence 77554 557899999873 332211 1111111 1245667999999988888777889999999999999999988
Q ss_pred CCCEEEEEEc-CCCCCEEEEEECC
Q 007855 558 EGVCIGCEWH-PLEQSKVATCGWD 580 (587)
Q Consensus 558 ~~~V~~v~~s-p~~~~~l~s~g~D 580 (587)
...+++++|. |+...+++|...+
T Consensus 240 ~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 240 VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred CCCceEEEEeCCCCCEEEEEcCCc
Confidence 7889999998 7444455555443
No 205
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.45 E-value=8.2e-11 Score=123.85 Aligned_cols=241 Identities=11% Similarity=0.113 Sum_probs=162.8
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCC--eEEEEECCCCcE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDK--NIKYWDTETGQV 374 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg--~I~vWd~~t~~~ 374 (587)
.....|+|+++ ++++++...++.|++||. ..+........ ..... ++|+++++.|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~-g~lyv~d~~~~~I~~id~-~~g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGN-NTVLAYQRDDPRVRLISV-DDNKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECST-TEEEEEETTTTEEEEEET-TTTEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCC-CCEEEEecCCCcEEEEEC-CCCEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce
Confidence 46889999998 888888888899999998 55655554443 33334 99999999999988866 799999887665
Q ss_pred EEEe----e-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE----EccCCCCe--eEEEEecC-CCEEE
Q 007855 375 IRTF----S-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE----YDQHLGAV--NTITFVDN-NRRFV 442 (587)
Q Consensus 375 i~~~----~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~----~~~h~~~I--~~i~~sp~-~~~l~ 442 (587)
...+ . ....+..+++.+.. +. |+++..++.|+.||..++..... ..++...- +.++|+|+ +.+++
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~--g~-lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv 283 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETE--EW-LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYM 283 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTS--SE-EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEE
T ss_pred eEEeeeccchhcCCcEEEEEeCCC--Ce-EEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEE
Confidence 4444 2 33455667777632 23 45577788999999987764332 22222222 39999995 55556
Q ss_pred EEECCCCEEEEECCCCeEEEEeecC-------------CCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccc
Q 007855 443 TSSDDKSLRVWEFGIPVVIKYISEP-------------HMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 443 s~s~Dg~I~iwd~~~~~~~~~~~~~-------------~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~ 508 (587)
+-...+.|+.|+...... ...... .......++++++|.++++-+ .++.|+.|++.++.......
T Consensus 284 ~d~~~~~I~~~~~~g~~~-~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g 362 (409)
T 3hrp_A 284 SDQNLSSVYKITPDGECE-WFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG 362 (409)
T ss_dssp EETTTTEEEEECTTCCEE-EEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred EeCCCCEEEEEecCCCEE-EEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence 666678899999875422 121111 123478899999999777777 78999999976654221111
Q ss_pred e--eccc-------ccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 509 R--FAGH-------IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 509 ~--~~~~-------~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
. ..+. ..-.....++++++|.++++-..+++|+.+++
T Consensus 363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 0 0000 00134667999999888888888888888765
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.45 E-value=2.2e-11 Score=127.96 Aligned_cols=256 Identities=12% Similarity=0.036 Sum_probs=179.3
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe----------CCCeEEEEECCCCcEEEEeecC-------
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG------- 381 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s----------~Dg~I~vWd~~t~~~i~~~~~~------- 381 (587)
+.|.+.|. .+.+.+.++..-..+ .++++|||++|+++. .++.|.++|+.+++.+..+..+
T Consensus 99 ~~VsVID~-~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~ 175 (426)
T 3c75_H 99 TQQFVIDG-STGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLV 175 (426)
T ss_dssp EEEEEEET-TTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCB
T ss_pred CeEEEEEC-CCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCcccccc
Confidence 79999999 788888888755555 899999999998886 3678999999999999888753
Q ss_pred -CcceEEEEccCCCCCcEEEEEe-C-CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC-CCEEEEEECCCCEEEEECCC
Q 007855 382 -KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGI 457 (587)
Q Consensus 382 -~~~~~~~~~~~~~~~~~l~sg~-~-dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~ 457 (587)
..+..+.+++++. .++++. . ++.|.++|+.+++.+..+.... . ....|+ .+.+++.+.||.+.+.++..
T Consensus 176 g~~P~~~~~spDGk---~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~--~~~~p~g~~~~v~~~~dG~~~~V~~~~ 248 (426)
T 3c75_H 176 GTYQWMNALTPDNK---NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C--YHIFPASPTVFYMNCRDGSLARVDFAD 248 (426)
T ss_dssp SCCGGGSEECTTSS---EEEEEECSSSCEEEEEETTTTEEEEEEECCS--E--EEEEEEETTEEEEEETTSSEEEEECCT
T ss_pred CCCcceEEEcCCCC---EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--c--eeeccCCCcEEEEEcCCCCEEEEECCC
Confidence 3466778887653 455554 3 6889999999999988876422 1 233333 36677788888888888855
Q ss_pred CeEEEEe----ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceec--------ccccccceEEEEEc
Q 007855 458 PVVIKYI----SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFA--------GHIVAGYACQVNFS 525 (587)
Q Consensus 458 ~~~~~~~----~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~i~~l~~s 525 (587)
.+..... ..........+.+.+++..++..+..+.|.+.|+....... ...+. ..........++++
T Consensus 249 ~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v-~~~~~~~~~~~i~~g~~p~g~~~va~s 327 (426)
T 3c75_H 249 GETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATF-RAPIEALTEAERADDWRPGGWQQTAYH 327 (426)
T ss_dssp TCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEE-CCCEESSCTTTGGGTEEECSSSCEEEE
T ss_pred CcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEE-eeeeeeccccccccccccCCceeeEEc
Confidence 5444221 11111112345678898888888888999999986532110 01100 00001111126899
Q ss_pred CCCCEEEEEcC----------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCC-EEEEEE-CCCcEEEcC
Q 007855 526 PDGRFVMSGDG----------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQS-KVATCG-WDGLIKYWD 587 (587)
Q Consensus 526 pdg~~L~sgs~----------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~-~l~s~g-~DG~I~iWD 587 (587)
|+++.|++... .+.|.++|..+.+.+.++.... ...++.|+| +++ +|+++. .++.|.|+|
T Consensus 328 ~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~-~P~gia~sp-Dg~~~lyv~n~~s~~VsVID 399 (426)
T 3c75_H 328 RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGH-EIDSINVSQ-DAEPLLYALSAGTQTLHIYD 399 (426)
T ss_dssp GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE-EECEEEECC-SSSCEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCC-CcCeEEEcc-CCCEEEEEEcCCCCeEEEEE
Confidence 99998776642 3579999999999999987543 478999999 555 777777 589999986
No 207
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.43 E-value=1.7e-11 Score=125.84 Aligned_cols=270 Identities=11% Similarity=0.083 Sum_probs=178.4
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEe--CCCeEEEEecCCCCeeeEEEc-------ccCCceeeEEEecCCCeEEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAG--MDTKVKIWDVFNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLT 357 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs--~Dg~I~iWd~~~~~~~~~~~~-------~h~~~V~~l~fs~dg~~l~s 357 (587)
+.++.+. ..+..|+++|+ ++++++.. .++.++||.+. .++. ..+. .|...+..|+|+++++++++
T Consensus 10 ~~v~~~~---~~p~~va~~~~-g~~~v~~~~~~~~~~~l~~~~-~g~~-~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~ 83 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPD-GRLFLSLHQFYQPEMQVAELT-QDGL-IPFPPQSGNAIITFDTVLGIKSDGNGIVWML 83 (343)
T ss_dssp EEEEEES---SCEEEEEECTT-SCEEEEECGGGCCSCSEEEEE-TTEE-EESCCCCSSCCCCCSCEEEEEECSSSEEEEE
T ss_pred EEEEEcC---CCcceEEECCC-CCEEEEeCCCCCCceEEEEEC-CCCe-ecCCCcccCcccceeEeeEEEEcCCCcEEEE
Confidence 4455554 67999999999 88888864 23447778774 4543 2221 34568999999999876665
Q ss_pred EeC-----CCeEEEEECCCCcEEEEeecCC-------cceEEEEccCCCCCcEEEEEe---CCCcEEEEeCCCCcEEEEE
Q 007855 358 ASY-----DKNIKYWDTETGQVIRTFSTGK-------IPYVVKLNPDDDKQNILLAGM---SDKKIVQWDMNTKEITQEY 422 (587)
Q Consensus 358 ~s~-----Dg~I~vWd~~t~~~i~~~~~~~-------~~~~~~~~~~~~~~~~l~sg~---~dg~I~iwD~~t~~~~~~~ 422 (587)
-.. ++.|.+||+.+++.+..+.... .+..+.+.+. .+.++++.. .++.|.+||+.+++....+
T Consensus 84 D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~--~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~ 161 (343)
T 2qe8_A 84 DNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLI--HNFVYISDPAPDDKAALIRVDLQTGLAARVL 161 (343)
T ss_dssp ECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETT--TTEEEEEECCSGGGCEEEEEETTTCCEEEEC
T ss_pred cCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecC--CCEEEEEcCccCCCCeEEEEECCCCCEEEEe
Confidence 433 5789999999999887776431 2345666653 234556655 6789999999999877776
Q ss_pred ccCCCCee-EEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC-eEEEEEcCC
Q 007855 423 DQHLGAVN-TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-QILIYSTRE 500 (587)
Q Consensus 423 ~~h~~~I~-~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg-~I~iwd~~~ 500 (587)
..|..... ...+..++..|.+.+.++.+..|. ..+..|+++|+++.|+++...+ .|..++...
T Consensus 162 ~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~---------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~ 226 (343)
T 2qe8_A 162 QGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH---------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD 226 (343)
T ss_dssp TTCTTTSCCSCCCEETTEECBEECTTSCEECCC---------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred cCCCcccccccceeECCEEEEeccCCCceecee---------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence 65432211 144556777777778888876553 1356799999999998887766 555555321
Q ss_pred ce--eecc---cc--eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec-CCCCEEEEEEcCCCCC
Q 007855 501 RF--QLNK---KK--RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC-HEGVCIGCEWHPLEQS 572 (587)
Q Consensus 501 ~~--~~~~---~~--~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~-h~~~V~~v~~sp~~~~ 572 (587)
.. .+.. .. ...++ .+....++++++|.++++...++.|.+||..+++....... +...+.+|+|.+ ++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~g~--~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~-~g~ 303 (343)
T 2qe8_A 227 LSNLQLTDAELGSKIERYSE--KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGS-DGY 303 (343)
T ss_dssp HTCTTCCHHHHHTTCEEEEE--CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECT-TSC
T ss_pred hcCCCCChhhhhcceEeccc--CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECC-CCc
Confidence 00 0000 00 01111 12344589999999999999999999999866765433332 245689999998 566
Q ss_pred EEEEEECCCc
Q 007855 573 KVATCGWDGL 582 (587)
Q Consensus 573 ~l~s~g~DG~ 582 (587)
++++.+..+.
T Consensus 304 l~v~~~~~~~ 313 (343)
T 2qe8_A 304 LYFDCNQLHH 313 (343)
T ss_dssp EEEEECCGGG
T ss_pred EEEEeCcccc
Confidence 7777664433
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.43 E-value=5.3e-11 Score=125.00 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=180.8
Q ss_pred CCceEEEEcCCCCCeEEEEEccCCCcEEEEEe----------CCCeEEEEecCCCCeeeEEEccc-------CCceeeEE
Q 007855 285 PKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDIS 347 (587)
Q Consensus 285 p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~ 347 (587)
..+++.++.--..+ .|+++|+ +++|+.+. .++.|.++|. .+.+.+..+.-. ......+.
T Consensus 108 t~~vv~~I~vG~~P--gia~SpD-gk~lyVan~~~~~~~~G~~~~~VsviD~-~t~~vv~~I~v~g~~r~~~g~~P~~~~ 183 (426)
T 3c75_H 108 TGRILGMTDGGFLP--HPVAAED-GSFFAQASTVFERIARGKRTDYVEVFDP-VTFLPIADIELPDAPRFLVGTYQWMNA 183 (426)
T ss_dssp TTEEEEEEEECSSC--EEEECTT-SSCEEEEEEEEEETTEEEEEEEEEEECT-TTCCEEEEEEETTCCCCCBSCCGGGSE
T ss_pred CCEEEEEEECCCCC--ceEECCC-CCEEEEEeccccccccCCCCCEEEEEEC-CCCcEEEEEECCCccccccCCCcceEE
Confidence 45666777644455 8999999 66666654 4678999999 778877776421 23456899
Q ss_pred EecCCCeEEEEeC--CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---
Q 007855 348 FCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY--- 422 (587)
Q Consensus 348 fs~dg~~l~s~s~--Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~--- 422 (587)
|+|||++|+++.. ++.|.+.|+.+++.+..+..+.. ....|.+. ..+++.+.||.+.+.++.+++.....
T Consensus 184 ~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~---~~~~p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~ 258 (426)
T 3c75_H 184 LTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC---YHIFPASP--TVFYMNCRDGSLARVDFADGETKVTNTEV 258 (426)
T ss_dssp ECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEEET--TEEEEEETTSSEEEEECCTTCCEEEECCC
T ss_pred EcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc---eeeccCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeee
Confidence 9999999999874 57899999999999999887543 33444432 56778888999999999666655322
Q ss_pred -ccCCCCe-eEEEEecCCCEEEEEECCCCEEEEECCCCeEEE--EeecC---------CCcceeEEEEeCCCCEEEEEEC
Q 007855 423 -DQHLGAV-NTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIK--YISEP---------HMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 423 -~~h~~~I-~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~--~~~~~---------~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
.....++ ..+.+.+++..++..+..+.|.+.|+....... .+... .......++++|+++.+++...
T Consensus 259 ~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~ 338 (426)
T 3c75_H 259 FHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVD 338 (426)
T ss_dssp CSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEE
T ss_pred eccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEec
Confidence 1111221 235678888888888888999999986543221 11100 0111223789999887777642
Q ss_pred ----------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC-EEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007855 490 ----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR-FVMSGD-GEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 490 ----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~L~sgs-~dG~I~vwd~~t~~~~~~l 554 (587)
.+.|.++|+.+...+..+.. ......+.|+|||+ +|++.. .++.|.++|+.+++.+.++
T Consensus 339 ~~~~gthk~~s~~VsVID~~T~kvv~~I~v------g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 339 QRDEWKHKAASRFVVVLNAETGERINKIEL------GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp ECCTTCTTSCEEEEEEEETTTCCEEEEEEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCCEEEEEECCCCeEEEEEEC------CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 35799999998876654432 12355699999999 888877 5899999999999999987
No 209
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.42 E-value=2.3e-10 Score=114.74 Aligned_cols=241 Identities=11% Similarity=0.157 Sum_probs=162.0
Q ss_pred EcCCCCCeEEEEEccCCCcEEEE-------EeCCCeEEEEecCCCCeeeEEEc----ccCCceeeEEEecC-CCeEEEEe
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILS-------AGMDTKVKIWDVFNSGKCMRTYM----GHSKAVRDISFCND-GTKFLTAS 359 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~s-------gs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fs~d-g~~l~s~s 359 (587)
+.+.-....+++|+++ +.++++ +..++.|.+|+. .+++...... ++...+.+++++++ |+++++ +
T Consensus 13 ~~~~~~~~~~~~~~~~-g~l~~~~~~~~~~~~~~~~i~~~d~-~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~ 89 (314)
T 1pjx_A 13 VTEDIPGAEGPVFDKN-GDFYIVAPEVEVNGKPAGEILRIDL-KTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-D 89 (314)
T ss_dssp EECCCTTCEEEEECTT-SCEEEEETTCEETTEECCEEEEECT-TTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-E
T ss_pred hhccCCCccCceECCC-CCEEEEEeccccCCCCCCEEEEEeC-CCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-E
Confidence 3444556789999988 788887 677899999997 4555433222 25567999999999 654444 4
Q ss_pred CCCeEEEEECCCCcEEEE-eecC-----CcceEEEEccCCCCCcEEEEEeCC---------------CcEEEEeCCCCcE
Q 007855 360 YDKNIKYWDTETGQVIRT-FSTG-----KIPYVVKLNPDDDKQNILLAGMSD---------------KKIVQWDMNTKEI 418 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~-~~~~-----~~~~~~~~~~~~~~~~~l~sg~~d---------------g~I~iwD~~t~~~ 418 (587)
..+.|.+||.. ++.... .... ..+..+.+.+++ +++++...+ +.|..||.. ++.
T Consensus 90 ~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~ 164 (314)
T 1pjx_A 90 MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG---NLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQM 164 (314)
T ss_dssp TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS---CEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCE
T ss_pred CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC---CEEEEecCcccccccccccccCCCCeEEEECCC-CCE
Confidence 45589999998 776543 2211 234566666643 456555544 578888876 554
Q ss_pred EEEEccCCCCeeEEEEe----cCCCEEEEE-ECCCCEEEEECC-CCeE-----EEEeecCCC-cceeEEEEeCCCCEEEE
Q 007855 419 TQEYDQHLGAVNTITFV----DNNRRFVTS-SDDKSLRVWEFG-IPVV-----IKYISEPHM-HSMPSISLHPNTNWLAA 486 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~s----p~~~~l~s~-s~Dg~I~iwd~~-~~~~-----~~~~~~~~~-~~i~~i~~sp~g~~l~~ 486 (587)
.... .+......++|+ ++++.|+++ ..++.|.+|++. .+.. ...+ ..+. ..+..++++++|.++++
T Consensus 165 ~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~-~~~~~~~p~~i~~d~~G~l~v~ 242 (314)
T 1pjx_A 165 IQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHI-PGTHEGGADGMDFDEDNNLLVA 242 (314)
T ss_dssp EEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEEC-CCCSSCEEEEEEEBTTCCEEEE
T ss_pred EEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEEC-CCCCCCCCCceEECCCCCEEEE
Confidence 3332 344567899999 999766555 467899999976 3331 1122 1122 55788999999998888
Q ss_pred EECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE-EEcCCCcEEEEeCCC
Q 007855 487 QSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKS 547 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~-sgs~dG~I~vwd~~t 547 (587)
...++.|.+|+..++..+.. +..+ ...+.+++|+|+|++|+ +...++.|..|++..
T Consensus 243 ~~~~~~i~~~d~~~g~~~~~---~~~~--~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 243 NWGSSHIEVFGPDGGQPKMR---IRCP--FEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EETTTEEEEECTTCBSCSEE---EECS--SSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EcCCCEEEEEcCCCCcEeEE---EeCC--CCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 88899999999875433322 2222 24577899999999555 455678899999864
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.40 E-value=2.5e-10 Score=120.09 Aligned_cols=235 Identities=10% Similarity=0.063 Sum_probs=165.0
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEI 418 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~ 418 (587)
.....|+|+++++++++...++.|++||..++...........+. +++.+.+ ..|+++..++ .|.+|+...+..
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g---~~l~~~d~~~~~~I~~~d~~~~~~ 206 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDK---QRVYSIGWEGTHTVYVYMKASGWA 206 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCB-CEECTTS---SEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCc-eeEecCC---CcEEEEecCCCceEEEEEcCCCce
Confidence 357899999999977777778999999999888776666655555 7777654 3667776655 799999876654
Q ss_pred EEEE----ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEe---ecCCCcce--eEEEEeCC-CCEEEEEE
Q 007855 419 TQEY----DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYI---SEPHMHSM--PSISLHPN-TNWLAAQS 488 (587)
Q Consensus 419 ~~~~----~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~---~~~~~~~i--~~i~~sp~-g~~l~~~s 488 (587)
...+ ......+.+++++|++..|+++..++.|+.||.......... ........ ..++|+|+ +.++++-.
T Consensus 207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 4444 225567889999996556666777889999999876543220 11122222 39999995 55555556
Q ss_pred CCCeEEEEEcCCceeecccceecccc-------------cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEE
Q 007855 489 LDNQILIYSTRERFQLNKKKRFAGHI-------------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTL 554 (587)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~~~~~~-------------~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l 554 (587)
.++.|+.|+....... +.++. .-.....++++++|+++++-. .+++|+.|++.++.. .++
T Consensus 287 ~~~~I~~~~~~g~~~~-----~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-~~~ 360 (409)
T 3hrp_A 287 NLSSVYKITPDGECEW-----FCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-STV 360 (409)
T ss_dssp TTTEEEEECTTCCEEE-----EEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-EEE
T ss_pred CCCEEEEEecCCCEEE-----EEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-EEE
Confidence 7789999987653211 11110 012366799999999888887 899999999888864 444
Q ss_pred ecC---------------CCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 555 KCH---------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 555 ~~h---------------~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.++ -....++++++ ++.++++-..+++|+.+
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i 406 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKY 406 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEE
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEE
Confidence 444 23588999999 57777777778888765
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.37 E-value=1.7e-09 Score=107.23 Aligned_cols=236 Identities=12% Similarity=0.084 Sum_probs=160.2
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeE-EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~ 372 (587)
.+...+.+|++.++ +.++++...++.|.+||. . ++... .+......+.++++.++|+++++...++.|..||.. +
T Consensus 59 ~~~~~~~~i~~~~~-g~l~v~~~~~~~v~~~d~-~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g 134 (300)
T 2qc5_A 59 TPDAKVMCLIVSSL-GDIWFTENGANKIGKLSK-K-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-G 134 (300)
T ss_dssp STTCCEEEEEECTT-SCEEEEETTTTEEEEECT-T-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-S
T ss_pred CCCCcceeEEECCC-CCEEEEecCCCeEEEECC-C-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-C
Confidence 44567999999998 788887777899999998 3 44432 222344678999999999888877778899999988 6
Q ss_pred cEEEE-ee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEE-EccCCCCeeEEEEecCCCEEEEEECCCC
Q 007855 373 QVIRT-FS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQE-YDQHLGAVNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 373 ~~i~~-~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~-~~~h~~~I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
+.... +. ....+..+.+.+++ +++++...++.|..||. +++.... ...+...+.++++.+++..+++....+.
T Consensus 135 ~~~~~~~~~~~~~~~~i~~d~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~ 210 (300)
T 2qc5_A 135 TIYEYDLPNKGSYPAFITLGSDN---ALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK 210 (300)
T ss_dssp CEEEEECSSTTCCEEEEEECTTS---SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE
T ss_pred CEEEccCCCCCCCceeEEECCCC---CEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE
Confidence 65432 22 12345556665533 46666666789999998 5554432 2234567899999999987777666778
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
|.+|+. .+.............+.+++++++|.++++...++.|..|+..... . ... .... ...+.+++++++|+
T Consensus 211 i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~-~-~~~-~~~~--~~~~~~i~~~~~g~ 284 (300)
T 2qc5_A 211 IGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITNDNTI-Q-EYQ-LQTE--NAEPHGITFGKDGS 284 (300)
T ss_dssp EEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTTSCE-E-EEE-CCST--TCCCCCEEECTTSC
T ss_pred EEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCCCcE-E-EEE-CCcc--CCccceeEeCCCCC
Confidence 999998 4443333222345568899999999866666667899999984321 1 111 1111 23456689999998
Q ss_pred EEEEEcCCCcEEEEeC
Q 007855 530 FVMSGDGEGKCWFWDW 545 (587)
Q Consensus 530 ~L~sgs~dG~I~vwd~ 545 (587)
+.++.. . .|..+|.
T Consensus 285 l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 285 VWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEECS-S-EEEEEEE
T ss_pred EEEEcc-C-ceEEeCC
Confidence 666555 4 7777764
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.36 E-value=1.1e-10 Score=132.40 Aligned_cols=243 Identities=12% Similarity=0.063 Sum_probs=156.4
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeCC-----CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe-----
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGMD-----TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 363 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~D-----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~----- 363 (587)
+|...+..++|||+ |++|+.++.+ ..|++||+ .+++.+... .+...+..++|+|| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPD-G~~la~~~~~~G~e~~~i~v~dl-~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~ 235 (741)
T 1yr2_A 160 DGATALDAWAASDD-GRLLAYSVQDGGSDWRTVKFVGV-ADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQA 235 (741)
T ss_dssp ---EEEEEEEECTT-SSEEEEEEEETTCSEEEEEEEET-TTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC-----
T ss_pred CCCEEEEeEEECCC-CCEEEEEEcCCCCceEEEEEEEC-CCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCcccccc
Confidence 34457889999999 7877766543 46999999 667665431 12223468999999 99998887654
Q ss_pred ---------EEEEECCCCcE--EEEeecCC---cceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCC--cEEEEE
Q 007855 364 ---------IKYWDTETGQV--IRTFSTGK---IPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTK--EITQEY 422 (587)
Q Consensus 364 ---------I~vWd~~t~~~--i~~~~~~~---~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~--~~~~~~ 422 (587)
|.+|++.+++. ...+.... ....+.+++++ ..|+..+.+ ..|++||+.++ +....+
T Consensus 236 ~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG---~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l 312 (741)
T 1yr2_A 236 FQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG---RWVVITSSEGTDPVNTVHVARVTNGKIGPVTAL 312 (741)
T ss_dssp ---CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS---CEEEEEEECTTCSCCEEEEEEEETTEECCCEEE
T ss_pred cccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC---CEEEEEEEccCCCcceEEEEECCCCCCcccEEe
Confidence 89999987752 22333222 23455666644 345544433 48999999887 413445
Q ss_pred ccCCCCeeEEEEecCCCEEEEEECCC----CEEEEECCCC-eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEE
Q 007855 423 DQHLGAVNTITFVDNNRRFVTSSDDK----SLRVWEFGIP-VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYS 497 (587)
Q Consensus 423 ~~h~~~I~~i~~sp~~~~l~s~s~Dg----~I~iwd~~~~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd 497 (587)
..+...+.... +++++.|+..+.++ .|.+||+..+ .....+...+...+..+++. ++.++++...++..+||.
T Consensus 313 ~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~ 390 (741)
T 1yr2_A 313 IPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLA 390 (741)
T ss_dssp ECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEE
T ss_pred cCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEE
Confidence 55555555553 48888888887644 4999999875 23344444445556777887 566778888888877775
Q ss_pred cC-CceeecccceecccccccceEEEEEcCCCCEEEEE----cCCCcEEEEeCCCCe
Q 007855 498 TR-ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG----DGEGKCWFWDWKSCK 549 (587)
Q Consensus 498 ~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg----s~dG~I~vwd~~t~~ 549 (587)
+. .+.... .+..+ ..+.+..++++|++..|+.. ...+.|++||+.+++
T Consensus 391 ~~~~g~~~~---~l~~~-~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 391 FDLDGKPAG---AVSLP-GIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EETTSCEEE---ECBCS-SSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EeCCCCcee---eccCC-CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 53 222221 12211 13567778999998866532 345789999998876
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.32 E-value=2.8e-09 Score=108.42 Aligned_cols=226 Identities=11% Similarity=0.015 Sum_probs=148.1
Q ss_pred ceeeEEEecCC-CeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEE
Q 007855 342 AVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQ 420 (587)
Q Consensus 342 ~V~~l~fs~dg-~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~ 420 (587)
...+..|++++ .++++...++.|.+||..+++.. .+.....+..+.+.+++ .+++ ++. ..|.+||..+++...
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~~~~~v~~i~~~~dg---~l~v-~~~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHALPFMGSALAKISDS---KQLI-ASD-DGLFLRDTATGVLTL 123 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEECSSCEEEEEEEETT---EEEE-EET-TEEEEEETTTCCEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEECCCcceEEEEeCCC---eEEE-EEC-CCEEEEECCCCcEEE
Confidence 34678899974 45566667899999999887653 34445556677777653 3444 444 459999998887644
Q ss_pred EEcc----CCCCeeEEEEecCCCEEEEEEC------CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE-EC
Q 007855 421 EYDQ----HLGAVNTITFVDNNRRFVTSSD------DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SL 489 (587)
Q Consensus 421 ~~~~----h~~~I~~i~~sp~~~~l~s~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~ 489 (587)
.... ....++++.++++|+++++... .+.|..++ .+...... ........++|+|+++.|+.+ +.
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~--~~~~~~~~i~~s~dg~~lyv~~~~ 199 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLF--ADISIPNSICFSPDGTTGYFVDTK 199 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEE--EEESSEEEEEECTTSCEEEEEETT
T ss_pred EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEee--CCCcccCCeEEcCCCCEEEEEECC
Confidence 3321 1235889999999987766542 24555555 44433222 122346789999999877655 45
Q ss_pred CCeEEEEEcC--Cc-eeec--ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEE
Q 007855 490 DNQILIYSTR--ER-FQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGC 564 (587)
Q Consensus 490 dg~I~iwd~~--~~-~~~~--~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v 564 (587)
++.|.+|++. ++ .... ....+... ......++++++|.+.++...++.|.+|+. +++.+..+..+...++++
T Consensus 200 ~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~--~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~ 276 (326)
T 2ghs_A 200 VNRLMRVPLDARTGLPTGKAEVFIDSTGI--KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCP 276 (326)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTS--SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEE
T ss_pred CCEEEEEEcccccCCcccCceEEEECCCC--CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEE
Confidence 6899999985 44 2111 11111111 234567899999988777767789999998 677888888777789999
Q ss_pred EEc-CCCCCEEEEEECC
Q 007855 565 EWH-PLEQSKVATCGWD 580 (587)
Q Consensus 565 ~~s-p~~~~~l~s~g~D 580 (587)
+|. ++...++++...+
T Consensus 277 af~g~d~~~L~vt~~~~ 293 (326)
T 2ghs_A 277 AFIGPDASRLLVTSARE 293 (326)
T ss_dssp EEESTTSCEEEEEEBCT
T ss_pred EEecCCCCEEEEEecCC
Confidence 998 7334344554444
No 214
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.31 E-value=7.3e-10 Score=111.46 Aligned_cols=239 Identities=11% Similarity=0.151 Sum_probs=154.8
Q ss_pred eeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 332 CMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 332 ~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.+..+...........|+++|+ ++++...++.|..|+. +++..........+..+.+.+++ +++++...++.|.+
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG---~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQ---RLVHCEHGRRAITR 111 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEEEEESCSCEEEEEECTTS---CEEEEETTTTEEEE
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEEEeCCCCccceeeECCCC---CEEEEECCCCEEEE
Confidence 3444445556678899999998 5666677899999998 45533222334445566666543 45555555688999
Q ss_pred EeCCCCcEEEEEcc----CCCCeeEEEEecCCCEEEE----EEC-------------CCCEEEEECCCCeEEEEeecCCC
Q 007855 411 WDMNTKEITQEYDQ----HLGAVNTITFVDNNRRFVT----SSD-------------DKSLRVWEFGIPVVIKYISEPHM 469 (587)
Q Consensus 411 wD~~t~~~~~~~~~----h~~~I~~i~~sp~~~~l~s----~s~-------------Dg~I~iwd~~~~~~~~~~~~~~~ 469 (587)
|+.. ++....... ....++.+++.++|+++++ +.. .+.|..||..++...... ..
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~ 187 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DL 187 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EE
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cC
Confidence 9986 554322211 1235778999999998876 321 245777777555433322 23
Q ss_pred cceeEEEEeCCCCEEEEEECC------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007855 470 HSMPSISLHPNTNWLAAQSLD------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~~~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vw 543 (587)
.....++|+|+++.|+++... +.|.+|++.... +.....+... ..+....++++++|++ .+++.+ .|.+|
T Consensus 188 ~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~-~~~~pdgi~~d~~G~l-wv~~~~-gv~~~ 263 (305)
T 3dr2_A 188 DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASV-PDGLPDGFCVDRGGWL-WSSSGT-GVCVF 263 (305)
T ss_dssp SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECC-SSSCCCSEEECTTSCE-EECCSS-EEEEE
T ss_pred CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEEC-CCCCCCeEEECCCCCE-EEecCC-cEEEE
Confidence 345789999999988887665 789999986543 2111111111 1223345889999994 444444 49999
Q ss_pred eCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 544 DWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 544 d~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
+. .++.+..+..+. .+.+++|.+ ++..|+.++.++..++
T Consensus 264 ~~-~g~~~~~~~~~~-~~~~~~f~~-d~~~L~it~~~~l~~~ 302 (305)
T 3dr2_A 264 DS-DGQLLGHIPTPG-TASNCTFDQ-AQQRLFITGGPCLWML 302 (305)
T ss_dssp CT-TSCEEEEEECSS-CCCEEEECT-TSCEEEEEETTEEEEE
T ss_pred CC-CCCEEEEEECCC-ceeEEEEeC-CCCEEEEEcCCeEEEE
Confidence 97 677888887665 478999997 6667777777766554
No 215
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.31 E-value=4.1e-11 Score=124.19 Aligned_cols=174 Identities=16% Similarity=0.138 Sum_probs=129.2
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC----------eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG----------KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~----------~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
.++.|++++. ..+|++|+.++ +++|++..-. +.... ..+.. |+.|+| ++++|+++ .++.|++|
T Consensus 39 ~~nlLais~~-~gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~-~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 39 SLQNLDISNS-KSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWE-KEIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp CCBCEEEETT-TTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEE-EECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred cccEEEEcCC-CCEEEEeCCCE-EEEEEhhHhhhhhccccccccceEE-eeCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 5899999999 77899999875 5569862111 11122 24666 999999 88999998 88999999
Q ss_pred ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 368 DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 368 d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
|+.+............. +..+.+... + +++++.||.|.+||+.++.... +...|+|++|+|+| ++.|..|
T Consensus 112 dv~sl~~~~~~~~~~~~-v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKP-VFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp ESSSTTCEEEEEECSSC-EEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred EchhhhccCccceeecc-eeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence 99876544433322222 223334333 2 8888999999999999887653 45689999999999 7889999
Q ss_pred CCEEEEECCCCeE--EEEeec--------CCCcceeEEEEeCCCCEEEEEE
Q 007855 448 KSLRVWEFGIPVV--IKYISE--------PHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 448 g~I~iwd~~~~~~--~~~~~~--------~~~~~i~~i~~sp~g~~l~~~s 488 (587)
|+|++|+...... ...+.. .+...|.+++|.+++.++++-.
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 9999999887775 445521 3568899999999999888754
No 216
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.30 E-value=3.5e-09 Score=109.52 Aligned_cols=260 Identities=10% Similarity=0.076 Sum_probs=172.1
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
+..|+.++.++.|..+|. .+++.+..+............. +..++.++.++.|..+|..+|+.+..+..........
T Consensus 103 ~~~v~v~~~~g~l~a~d~-~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 103 GGHVYIGSEKAQVYALNT-SDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 457778888999999999 7788877765443322222332 4478888899999999999999998887643321000
Q ss_pred --EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC----------e-eEEEEecCCCEEEEEECCCCEEEEEC
Q 007855 389 --LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA----------V-NTITFVDNNRRFVTSSDDKSLRVWEF 455 (587)
Q Consensus 389 --~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~----------I-~~i~~sp~~~~l~s~s~Dg~I~iwd~ 455 (587)
..+.-. ...+++++.++.|..+|..+++.+..+...... + ....+ .+..+++++.++.|..+|.
T Consensus 180 ~~~~~~~~-~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~ 256 (376)
T 3q7m_A 180 GESAPTTA-FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDL 256 (376)
T ss_dssp CCCCCEEE-TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEET
T ss_pred CCCCcEEE-CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEEC
Confidence 000000 135888888999999999999988766532110 1 11111 2457888888999999999
Q ss_pred CCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 456 GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 456 ~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
.+++.+..... .....+.. .+..|++++.++.|..+|..++..+............. ... .+..|++++
T Consensus 257 ~tG~~~w~~~~---~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~----~~~--~~~~l~v~~ 325 (376)
T 3q7m_A 257 RSGQIMWKREL---GSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTS----PVL--YNGNLVVGD 325 (376)
T ss_dssp TTCCEEEEECC---CCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCC----CEE--ETTEEEEEC
T ss_pred CCCcEEeeccC---CCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccC----CEE--ECCEEEEEe
Confidence 99887765532 22334443 46688888899999999998876543322111111111 122 256888999
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 536 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 536 ~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+|.|+++|..+++.+..+......+....... +..|+.++.+|.|..||
T Consensus 326 ~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 326 SEGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence 999999999999999888876444333221122 34788899999999875
No 217
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.29 E-value=1.3e-10 Score=120.06 Aligned_cols=261 Identities=9% Similarity=-0.020 Sum_probs=175.0
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEe----------CCCeEEEEecCCCCeeeEEEccc-------CCceeeE
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAG----------MDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDI 346 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs----------~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l 346 (587)
-..+.+.++..-..+ .+.++|+ +++|+++. .++.|.+||+ .+++.+.++... ......+
T Consensus 54 ~t~~v~~~i~vG~~P--~i~~spD-g~~lyVan~~~~r~~~G~~~~~VsviD~-~T~~vv~~I~v~~~~~~~~g~~P~~i 129 (368)
T 1mda_H 54 GCGVTLGHSLGAFLS--LAVAGHS-GSDFALASTSFARSAKGKRTDYVEVFDP-VTFLPIADIELPDAPRFSVGPRVHII 129 (368)
T ss_dssp TTTEEEEEEEECTTC--EEEECTT-SSCEEEEEEEETTTTSSSEEEEEEEECT-TTCCEEEEEEETTSCSCCBSCCTTSE
T ss_pred CCCeEEEEEeCCCCC--ceEECCC-CCEEEEEcccccccccCCCCCEEEEEEC-CCCCEEEEEECCCccccccCCCcceE
Confidence 345677777655556 7999999 66666664 4789999999 788888887533 1346789
Q ss_pred EEecCCCeEEEEeC--CCeEEE--EECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-----Cc
Q 007855 347 SFCNDGTKFLTASY--DKNIKY--WDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-----KE 417 (587)
Q Consensus 347 ~fs~dg~~l~s~s~--Dg~I~v--Wd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-----~~ 417 (587)
+|+|||++|+++.. +..|.+ +|+.+ +..+..+.. ..+.+.+ ...+++.+.|+.+.+.|+.+ ++
T Consensus 130 a~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g--~~~~~~~~~dg~~~~vd~~~~~~~~~~ 201 (368)
T 1mda_H 130 GNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGA--AATHYLGSCPASLAASDLAAAPAAAGI 201 (368)
T ss_dssp EECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEE--TTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred EEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCC--CeEEEEEcCCCCEEEEECccccccCCe
Confidence 99999999999875 467888 99887 555554332 1223432 24667777899999999987 43
Q ss_pred EEEE----EccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCC--eEEEEeecCC---------CcceeEEEEeCCCC
Q 007855 418 ITQE----YDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP--VVIKYISEPH---------MHSMPSISLHPNTN 482 (587)
Q Consensus 418 ~~~~----~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~--~~~~~~~~~~---------~~~i~~i~~sp~g~ 482 (587)
.+.. +.....+. . .+++..++..+. +.|.+.|+... ..+..+.... ......++++|+++
T Consensus 202 v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~ 276 (368)
T 1mda_H 202 VGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTD 276 (368)
T ss_dssp CCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTT
T ss_pred EEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCC
Confidence 3211 11112233 3 666666666666 99999998653 2333221110 11122378999999
Q ss_pred EEEEEEC---------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE-EEEEc-CCCcEEEEeCCCCeeE
Q 007855 483 WLAAQSL---------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGD-GEGKCWFWDWKSCKVF 551 (587)
Q Consensus 483 ~l~~~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-L~sgs-~dG~I~vwd~~t~~~~ 551 (587)
.++++.. ++.+.++|+.+...+..+.. ......++|+|||++ +++.. .++.|.++|+.+++.+
T Consensus 277 ~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v------g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 277 GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN------GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE------EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred EEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC------CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 8887643 23577999988766544432 123556999999984 45555 5899999999999999
Q ss_pred EEEecCCCCEEEEEEcC
Q 007855 552 RTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 552 ~~l~~h~~~V~~v~~sp 568 (587)
.++.....+ .++++.+
T Consensus 351 ~~I~vg~~P-~~i~~~~ 366 (368)
T 1mda_H 351 SSVELDKGP-ESLSVQN 366 (368)
T ss_dssp EECCCCSCC-CEEECCC
T ss_pred EEEECCCCC-CEEEeec
Confidence 999866553 4566554
No 218
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.27 E-value=1.4e-09 Score=109.25 Aligned_cols=239 Identities=10% Similarity=0.121 Sum_probs=157.3
Q ss_pred ceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEE
Q 007855 287 RLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKY 366 (587)
Q Consensus 287 ~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~v 366 (587)
..+..+..+........|+|++..+++++..++.|..|+. .+. ...+..+...+..++++++|+++++...++.|.+
T Consensus 35 ~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~--~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 35 ARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE--DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET--TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC--CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 3445566667778899999993347888888999999987 343 3455556778999999999986666555688999
Q ss_pred EECCCCcEEEEeec-----CCcceEEEEccCCCCCcEEEE----EeC-------------CCcEEEEeCCCCcEEEEEcc
Q 007855 367 WDTETGQVIRTFST-----GKIPYVVKLNPDDDKQNILLA----GMS-------------DKKIVQWDMNTKEITQEYDQ 424 (587)
Q Consensus 367 Wd~~t~~~i~~~~~-----~~~~~~~~~~~~~~~~~~l~s----g~~-------------dg~I~iwD~~t~~~~~~~~~ 424 (587)
|+.. ++....... ...+..+.+.+++ +++++ |.. .+.|..||..+++.....
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG---~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-- 185 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG---AIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-- 185 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTS---CEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCC---CEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--
Confidence 9986 554322211 1123446666543 45554 332 356888888777654433
Q ss_pred CCCCeeEEEEecCCCEEEEEECC------CCEEEEECCCCeE--EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEE
Q 007855 425 HLGAVNTITFVDNNRRFVTSSDD------KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIY 496 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s~D------g~I~iwd~~~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iw 496 (587)
.....+.++|+|+++.|+++... +.|.+|++..... ...+..........++++++|++. +++.+ .|.+|
T Consensus 186 ~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw-v~~~~-gv~~~ 263 (305)
T 3dr2_A 186 DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW-SSSGT-GVCVF 263 (305)
T ss_dssp EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE-ECCSS-EEEEE
T ss_pred cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE-EecCC-cEEEE
Confidence 44567899999999988877665 6899999875431 112222223445678999999944 44444 59999
Q ss_pred EcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEe
Q 007855 497 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 497 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd 544 (587)
+... ..+... ... ..+.+++|+++++.|+.++.++ |+.++
T Consensus 264 ~~~g-~~~~~~---~~~---~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 264 DSDG-QLLGHI---PTP---GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp CTTS-CEEEEE---ECS---SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred CCCC-CEEEEE---ECC---CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 9853 333222 111 1356789999999888887764 43333
No 219
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=4.1e-10 Score=126.24 Aligned_cols=273 Identities=14% Similarity=0.101 Sum_probs=183.4
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc-----------eeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA-----------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~-----------V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.++.|..+|. .+++.+..+...... ...+++ .+..|++++.|+.|..+|..+|+.+..
T Consensus 77 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDT-RTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp TTEEEEECGGGCEEEEET-TTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 456777777899999999 789988887644221 122333 456888889999999999999999998
Q ss_pred eecC-Ccc--eEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCCC--------------------
Q 007855 378 FSTG-KIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA-------------------- 428 (587)
Q Consensus 378 ~~~~-~~~--~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~~-------------------- 428 (587)
+... ... ..+...|.-.. ..+++++. ++.|+.||..+++.+..+......
T Consensus 154 ~~~~~~~~~~~~~~~~p~v~~-~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~ 232 (677)
T 1kb0_A 154 QNTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPS 232 (677)
T ss_dssp EETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGG
T ss_pred ecCCcCcCcCcccccCcEEEC-CEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccccccc
Confidence 8765 210 00000110011 24555553 689999999999998877542211
Q ss_pred ------------eeEEEEecCCCEEEEEECCC-------------------CEEEEECCCCeEEEEeecCCC--------
Q 007855 429 ------------VNTITFVDNNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEPHM-------- 469 (587)
Q Consensus 429 ------------I~~i~~sp~~~~l~s~s~Dg-------------------~I~iwd~~~~~~~~~~~~~~~-------- 469 (587)
...+++.+++..+++++.++ +|..+|..+++.+-.+...+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 13578888888988887664 499999999988876653221
Q ss_pred cceeEEEEeCCC---CEEEEEECCCeEEEEEcCCceeecccceeccc------cccc--------------ce-------
Q 007855 470 HSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGH------IVAG--------------YA------- 519 (587)
Q Consensus 470 ~~i~~i~~sp~g---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~------~~~~--------------~i------- 519 (587)
.....+....+| ..|++++.+|.|+++|..++..+.....-... .... .+
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 122223333467 68899999999999999988765432211000 0000 00
Q ss_pred ---EEEEEcCCCCEEEEEcC-------------------------------------------CCcEEEEeCCCCeeEEE
Q 007855 520 ---CQVNFSPDGRFVMSGDG-------------------------------------------EGKCWFWDWKSCKVFRT 553 (587)
Q Consensus 520 ---~~l~~spdg~~L~sgs~-------------------------------------------dG~I~vwd~~t~~~~~~ 553 (587)
..++|+|++.+|++... .|.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 14688999888877543 27899999999999888
Q ss_pred EecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 554 LKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 554 l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+... .++.+..+.. .+.+++.++.||.|++||
T Consensus 473 ~~~~-~~~~~g~~~~-~g~~v~~g~~dg~l~a~D 504 (677)
T 1kb0_A 473 VEHV-SPWNGGTLTT-AGNVVFQGTADGRLVAYH 504 (677)
T ss_dssp EEES-SSCCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred cCCC-CCCcCcceEe-CCCEEEEECCCCcEEEEE
Confidence 8743 3344444555 455888889999999986
No 220
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.26 E-value=3.7e-09 Score=105.85 Aligned_cols=230 Identities=9% Similarity=0.064 Sum_probs=150.6
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET 371 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t 371 (587)
+..+..-..+..|+|+.+.++++...++.|..|+. .++.. ..+ .....+.+++++++|+++++ . ++.|.+||..+
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~-~~~~~-~~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~ 82 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDS-FTKQV-QRV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKE 82 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEET-TTCCE-EEE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEEC-CCCcE-EEE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCC
Confidence 44455567789999976788888888999999998 44443 233 34567999999999995554 4 57899999998
Q ss_pred CcEEEEeecC-----CcceEEEEccCCCCCcEEEEEeC-----------CCcEEEEeCCCCcEEEEEccCCCCeeEEEEe
Q 007855 372 GQVIRTFSTG-----KIPYVVKLNPDDDKQNILLAGMS-----------DKKIVQWDMNTKEITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 372 ~~~i~~~~~~-----~~~~~~~~~~~~~~~~~l~sg~~-----------dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s 435 (587)
++........ ..+..+.+.+++ +++++... .+.|..++.. +.... +..+....+.++|+
T Consensus 83 g~~~~~~~~~~~~~~~~~~di~~d~dG---~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~s 157 (297)
T 3g4e_A 83 QSAVVLATVDNDKKNNRFNDGKVDPAG---RYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWS 157 (297)
T ss_dssp TEEEEEEECCTTCSSEEEEEEEECTTS---CEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEEC
T ss_pred CcEEEEEecCCCCCCCCCCCEEECCCC---CEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEc
Confidence 8764433321 123345555533 44444322 2345555543 33322 33344567899999
Q ss_pred cCCCEEEEE-ECCCCEEEEECC--CCeEE--EEee--cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 436 DNNRRFVTS-SDDKSLRVWEFG--IPVVI--KYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 436 p~~~~l~s~-s~Dg~I~iwd~~--~~~~~--~~~~--~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
|+++.|+.+ +.++.|.+|++. ++... ..+. .........++++++|++.++....+.|.+||..++..+..+.
T Consensus 158 pdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~ 237 (297)
T 3g4e_A 158 LDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK 237 (297)
T ss_dssp TTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE
T ss_pred CCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE
Confidence 999876554 557889999973 44321 1121 1123467889999999888888888899999988665443322
Q ss_pred eecccccccceEEEEEc-CCCCEEEEEcC
Q 007855 509 RFAGHIVAGYACQVNFS-PDGRFVMSGDG 536 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~s-pdg~~L~sgs~ 536 (587)
.+ ...+++++|. |+++.|++.+.
T Consensus 238 ---~p--~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 238 ---LP--VDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp ---CS--SSBEEEEEEESGGGCEEEEEEB
T ss_pred ---CC--CCCceEEEEeCCCCCEEEEEcC
Confidence 12 2457789998 88887765553
No 221
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.25 E-value=1.1e-10 Score=120.97 Aligned_cols=176 Identities=11% Similarity=0.066 Sum_probs=130.5
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-----------EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEE
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-----------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQ 410 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~i 410 (587)
.++.+++++...+|++|+.+ .+++|++.... ......... +..+.| + +++|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d---~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--H---GDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--E---TTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--C---CCEEEEE-cCCcEEE
Confidence 68999999999999999987 56669865332 222334444 667777 2 2577777 8899999
Q ss_pred EeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC
Q 007855 411 WDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD 490 (587)
Q Consensus 411 wD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d 490 (587)
||+++.........|...+.++.+.+. .+++++.||.|.+||+....... +...|+|++|+|+| ++.|..|
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-----~~~~Vs~v~WSpkG--~~vg~~d 181 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-----LAQNVTSFDVTNSQ--LAVLLKD 181 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-----EEESEEEEEECSSE--EEEEETT
T ss_pred EEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-----ccCCceEEEEcCCc--eEEEEcC
Confidence 999887766666678888988887754 38999999999999999777643 34589999999999 7889999
Q ss_pred CeEEEEEcCCcee--ecccc---eeccc-ccccceEEEEEcCCCCEEEEE
Q 007855 491 NQILIYSTRERFQ--LNKKK---RFAGH-IVAGYACQVNFSPDGRFVMSG 534 (587)
Q Consensus 491 g~I~iwd~~~~~~--~~~~~---~~~~~-~~~~~i~~l~~spdg~~L~sg 534 (587)
|.|++|+...... ...+. .+..+ .....+.+++|.+++.+|++-
T Consensus 182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y 231 (388)
T 1xip_A 182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF 231 (388)
T ss_dssp SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence 9999998866542 11111 11110 014678899999999998873
No 222
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.24 E-value=5.1e-10 Score=125.67 Aligned_cols=273 Identities=14% Similarity=0.090 Sum_probs=180.8
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc----------e-eeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~----------V-~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.++.|..+|. .+++.+..+..+... + ..+++ .+..|++++.|+.|..+|..+|+.+..
T Consensus 70 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDA-RDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp TTEEEEECGGGCEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCeEEEEEC-CCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee
Confidence 457777788899999999 789988887643321 0 11223 356788899999999999999999988
Q ss_pred eecC-Ccc--eEEEEccCCCCCcEEEEEe------CCCcEEEEeCCCCcEEEEEccCC----------------------
Q 007855 378 FSTG-KIP--YVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHL---------------------- 426 (587)
Q Consensus 378 ~~~~-~~~--~~~~~~~~~~~~~~l~sg~------~dg~I~iwD~~t~~~~~~~~~h~---------------------- 426 (587)
+... ... ..+...|.-.. ..+++++ .++.|+.||..+|+.+..+....
T Consensus 147 ~~~~~~~~~~~~~~~sP~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 225 (689)
T 1yiq_A 147 VDTRADHKRSYTITGAPRVVN-GKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGD 225 (689)
T ss_dssp EECCSCTTSCCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSS
T ss_pred ecCcCCCCCCccccCCcEEEC-CEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCc
Confidence 8764 211 11111110001 2455554 36899999999999887765210
Q ss_pred ---------CCeeEEEEecCCCEEEEEECCCC-------------------EEEEECCCCeEEEEeecC-CC-------c
Q 007855 427 ---------GAVNTITFVDNNRRFVTSSDDKS-------------------LRVWEFGIPVVIKYISEP-HM-------H 470 (587)
Q Consensus 427 ---------~~I~~i~~sp~~~~l~s~s~Dg~-------------------I~iwd~~~~~~~~~~~~~-~~-------~ 470 (587)
.....+++.|+..++++++.++. |..||..+++.+-.+... +. .
T Consensus 226 ~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~ 305 (689)
T 1yiq_A 226 AYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQ 305 (689)
T ss_dssp THHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCS
T ss_pred eeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCC
Confidence 01135788888889999887763 999999999888766532 21 1
Q ss_pred ceeEEEEeCCCC---EEEEEECCCeEEEEEcCCceeecccceec----cc-------------------cccc-------
Q 007855 471 SMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA----GH-------------------IVAG------- 517 (587)
Q Consensus 471 ~i~~i~~sp~g~---~l~~~s~dg~I~iwd~~~~~~~~~~~~~~----~~-------------------~~~~------- 517 (587)
.+....+..+|+ .|+.++.+|.|+++|..++..+....... .+ ....
T Consensus 306 ~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~ 385 (689)
T 1yiq_A 306 HMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAF 385 (689)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCT
T ss_pred CcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCc
Confidence 122222333564 78899999999999998887652211000 00 0000
Q ss_pred ----ceEEEEEcCCCCEEEEEcC---------------------------------------------CCcEEEEeCCCC
Q 007855 518 ----YACQVNFSPDGRFVMSGDG---------------------------------------------EGKCWFWDWKSC 548 (587)
Q Consensus 518 ----~i~~l~~spdg~~L~sgs~---------------------------------------------dG~I~vwd~~t~ 548 (587)
.-..++|+|+..+|++... +|.|..||+.++
T Consensus 386 ~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG 465 (689)
T 1yiq_A 386 WGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQ 465 (689)
T ss_dssp TCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTT
T ss_pred ccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCC
Confidence 0112688998888776522 378999999999
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 549 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 549 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.+..+..+.. +....+.. .+.+|+.++.||.|+.||
T Consensus 466 ~~~W~~~~~~~-~~~g~~~t-agglvf~gt~dg~l~a~D 502 (689)
T 1yiq_A 466 QAAWEVPYVTI-FNGGTLST-AGNLVFEGSADGRVIAYA 502 (689)
T ss_dssp EEEEEEEESSS-CCCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred CeEeEccCCCC-ccCccceE-CCCEEEEECCCCcEEEEE
Confidence 99988876543 23334444 456899999999999997
No 223
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.23 E-value=4.2e-09 Score=108.93 Aligned_cols=257 Identities=10% Similarity=0.054 Sum_probs=168.7
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccC---------CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS---------KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS 379 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~---------~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~ 379 (587)
+..|+.++.++.|..+|. .+++.+..+.... ..+.+. ...++..++.++.++.|..+|..+|+.+..+.
T Consensus 53 ~~~v~~~~~~g~v~a~d~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 53 DNVVYAADRAGLVKALNA-DDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCEEEEEcCCCeEEEEEc-cCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 567778888999999999 6788776665421 222221 22245678888899999999999999988877
Q ss_pred cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe-----eEEEEecCCCEEEEEECCCCEEEEE
Q 007855 380 TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV-----NTITFVDNNRRFVTSSDDKSLRVWE 454 (587)
Q Consensus 380 ~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I-----~~i~~sp~~~~l~s~s~Dg~I~iwd 454 (587)
............ ...+++++.++.|..+|..+++.+..+....... ...... +..+++++.++.|..+|
T Consensus 131 ~~~~~~~~p~~~----~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d 204 (376)
T 3q7m_A 131 VAGEALSRPVVS----DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL 204 (376)
T ss_dssp CSSCCCSCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred CCCceEcCCEEE----CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence 654322111111 1368888999999999999999887775432211 222232 45688888899999999
Q ss_pred CCCCeEEEEeecCCCcc---------e-eEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEE
Q 007855 455 FGIPVVIKYISEPHMHS---------M-PSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~---------i-~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
..++..+.......... + ....+ .+..+++++.++.|..+|..++..+..... .....+..
T Consensus 205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-------~~~~~~~~ 275 (376)
T 3q7m_A 205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKREL-------GSVNDFIV 275 (376)
T ss_dssp TTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECC-------CCEEEEEE
T ss_pred CCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccC-------CCCCCceE
Confidence 99888776654321100 0 11111 256788888899999999988765432221 11122333
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-CCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 525 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++..|++++.+|.|..+|..+++.+...... ...+...... +..|+.++.+|.|.++|
T Consensus 276 --~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d 334 (376)
T 3q7m_A 276 --DGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWIN 334 (376)
T ss_dssp --ETTEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEE
T ss_pred --ECCEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEE
Confidence 4668888888999999999999988777622 2222223332 24788888888888775
No 224
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.22 E-value=9.5e-10 Score=113.51 Aligned_cols=248 Identities=9% Similarity=-0.097 Sum_probs=167.0
Q ss_pred eEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe----------CCCeEEEEECCCCcEEEEeecC--------
Q 007855 320 KVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----------YDKNIKYWDTETGQVIRTFSTG-------- 381 (587)
Q Consensus 320 ~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s----------~Dg~I~vWd~~t~~~i~~~~~~-------- 381 (587)
+|.+.|. .+++.+.++.....+ .+.++||+++++++. .++.|.+||+.+++.+..+..+
T Consensus 47 ~vsvID~-~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g 123 (368)
T 1mda_H 47 ENWVSCA-GCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVG 123 (368)
T ss_dssp EEEEEET-TTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBS
T ss_pred eEEEEEC-CCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccC
Confidence 8889999 788999888755556 799999999999886 3689999999999999998765
Q ss_pred CcceEEEEccCCCCCcEEEEEe-C-CCcEEE--EeCCCCcEEEEEccCCCCeeEEEEecCC-CEEEEEECCCCEEEEECC
Q 007855 382 KIPYVVKLNPDDDKQNILLAGM-S-DKKIVQ--WDMNTKEITQEYDQHLGAVNTITFVDNN-RRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 382 ~~~~~~~~~~~~~~~~~l~sg~-~-dg~I~i--wD~~t~~~~~~~~~h~~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~ 456 (587)
..+..+.++|++. +++++. . ...|.+ +|+.+ +..+... +. +.+.|++ ..+++.+.|+.+.+.++.
T Consensus 124 ~~P~~ia~SpDGk---~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~ 193 (368)
T 1mda_H 124 PRVHIIGNCASSA---CLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLA 193 (368)
T ss_dssp CCTTSEEECTTSS---CEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECC
T ss_pred CCcceEEEcCCCC---EEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECc
Confidence 4577889998764 355554 3 467888 99877 4444321 11 1223433 456667788998888987
Q ss_pred C-----CeEEEE---eecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce--eeccccee------cccccccceE
Q 007855 457 I-----PVVIKY---ISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF--QLNKKKRF------AGHIVAGYAC 520 (587)
Q Consensus 457 ~-----~~~~~~---~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~--~~~~~~~~------~~~~~~~~i~ 520 (587)
. ++.... .......+. . .+++..++..+. +.|.+.|+.... .+...... .+. ......
T Consensus 194 ~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~-~p~g~~ 267 (368)
T 1mda_H 194 AAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNF-RSAGFQ 267 (368)
T ss_dssp SSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTE-EECSSS
T ss_pred cccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccc-ccCcce
Confidence 6 222110 000112222 3 666676666666 999999986432 11111100 000 011111
Q ss_pred EEEEcCCCCEEEEEcC---------CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEE-CCCcEEEcC
Q 007855 521 QVNFSPDGRFVMSGDG---------EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCG-WDGLIKYWD 587 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~---------dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG~I~iWD 587 (587)
.++|+|+++.|+.+.. .+.+.++|+.+++.+.++.... ...+++|+|++..+++++. .++.|.++|
T Consensus 268 ~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID 343 (368)
T 1mda_H 268 MVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYD 343 (368)
T ss_dssp CEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred eeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence 2689999998886543 2356799999999998887554 5789999996556788888 599999987
No 225
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=3.8e-09 Score=118.56 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=168.8
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEccc--CCceeeEEEec---CCCeEEEEe------CCCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGH--SKAVRDISFCN---DGTKFLTAS------YDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h--~~~V~~l~fs~---dg~~l~s~s------~Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.|+.|..+|. .+++.+..+... ......+..+| ++. +++++ .++.|..||..+|+.+..
T Consensus 121 ~g~v~v~~~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 121 KGKVYVGVLDGRLEAIDA-KTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEccCCEEEEEEC-CCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 457888899999999999 788888776542 11111111122 444 44443 378999999999999988
Q ss_pred eecCC-cc-------------------------------eEEEEccCCCCCcEEEEEeCCCc------------------
Q 007855 378 FSTGK-IP-------------------------------YVVKLNPDDDKQNILLAGMSDKK------------------ 407 (587)
Q Consensus 378 ~~~~~-~~-------------------------------~~~~~~~~~~~~~~l~sg~~dg~------------------ 407 (587)
+.... .+ ....+.+. ..+++++..++.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~ 275 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE---LNLLYIGVGNGSLWDPKWRSQAKGDNLFLS 275 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHHTTCSCCTTTT
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeee
Confidence 76311 00 02334432 357888877763
Q ss_pred -EEEEeCCCCcEEEEEcc--CC-------CCeeEEEEecCCC---EEEEEECCCCEEEEECCCCeEEEEeecCCC-----
Q 007855 408 -IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDNNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM----- 469 (587)
Q Consensus 408 -I~iwD~~t~~~~~~~~~--h~-------~~I~~i~~sp~~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~----- 469 (587)
|..||..+++.+..++. |. .++.......+++ .++.++.+|.|+++|..+++.+........
T Consensus 276 ~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 355 (689)
T 1yiq_A 276 SIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKG 355 (689)
T ss_dssp EEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred eEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccc
Confidence 99999999999888764 21 1222223333564 788999999999999999988744322110
Q ss_pred ---------------------------------cceeEEEEeCCCCEEEEEEC---------------------------
Q 007855 470 ---------------------------------HSMPSISLHPNTNWLAAQSL--------------------------- 489 (587)
Q Consensus 470 ---------------------------------~~i~~i~~sp~g~~l~~~s~--------------------------- 489 (587)
.....++++|+..+|++.+.
T Consensus 356 ~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 435 (689)
T 1yiq_A 356 MDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLR 435 (689)
T ss_dssp EETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSE
T ss_pred cCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCcc
Confidence 00123788898888877643
Q ss_pred ------------------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007855 490 ------------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 490 ------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
+|.|..||+.+++.+-.... ... .....++..+.+|++|+.||.|+.||.++|+.+
T Consensus 436 ~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~-----~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 436 TGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY-VTI-----FNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp ECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE-SSS-----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred ccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC-CCC-----ccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 37799999988865543322 111 111245557889999999999999999999999
Q ss_pred EEEecCCCCE-EEEEEcCCCCCEEEEEE
Q 007855 552 RTLKCHEGVC-IGCEWHPLEQSKVATCG 578 (587)
Q Consensus 552 ~~l~~h~~~V-~~v~~sp~~~~~l~s~g 578 (587)
..++...+.+ .-+.|..++..++++.+
T Consensus 510 w~~~~~~~~~~~p~ty~~~G~qyv~~~~ 537 (689)
T 1yiq_A 510 WEQPAASGVMAAPVTYSVDGEQYVTFMA 537 (689)
T ss_dssp EEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred eeeeCCCCcccCceEEEECCEEEEEEEe
Confidence 9998654322 33556664444555443
No 226
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.20 E-value=4.1e-08 Score=99.69 Aligned_cols=223 Identities=12% Similarity=0.069 Sum_probs=146.1
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
.-..+.+|+|+++.++++...++.|.+|+. .+++.. .+. ....|.+++|+++|+++++. . ..|.+||..+++...
T Consensus 49 ~~~egp~~~~~~~~l~~~d~~~~~i~~~d~-~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~-~gl~~~d~~~g~~~~ 123 (326)
T 2ghs_A 49 LLGEGPTFDPASGTAWWFNILERELHELHL-ASGRKT-VHA-LPFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTL 123 (326)
T ss_dssp SBEEEEEEETTTTEEEEEEGGGTEEEEEET-TTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEE
T ss_pred CCCcCCeEeCCCCEEEEEECCCCEEEEEEC-CCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-C-CCEEEEECCCCcEEE
Confidence 345788999986778888888899999998 455433 332 34679999999999877754 3 459999998887654
Q ss_pred EeecC-----CcceEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE-
Q 007855 377 TFSTG-----KIPYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS- 444 (587)
Q Consensus 377 ~~~~~-----~~~~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~- 444 (587)
..... ..+..+.+.+++ +++++... .+.|..++ +++... +..+....+.++|+|+++.|+.+
T Consensus 124 ~~~~~~~~~~~~~~~i~~d~~G---~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~ 197 (326)
T 2ghs_A 124 HAELESDLPGNRSNDGRMHPSG---ALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVD 197 (326)
T ss_dssp EECSSTTCTTEEEEEEEECTTS---CEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEE
T ss_pred EeeCCCCCCCCCCCCEEECCCC---CEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEE
Confidence 33221 123345555533 44444332 25677777 454433 32344567899999999877555
Q ss_pred ECCCCEEEEECC--CC-e-----EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccc
Q 007855 445 SDDKSLRVWEFG--IP-V-----VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVA 516 (587)
Q Consensus 445 s~Dg~I~iwd~~--~~-~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 516 (587)
+.++.|.+|++. ++ . ....+ .........++++++|.++++...++.|.+|+.. +..+.. +..+ .
T Consensus 198 ~~~~~I~~~d~~~~~Gl~~~~~~~~~~~-~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~---i~~~--~ 270 (326)
T 2ghs_A 198 TKVNRLMRVPLDARTGLPTGKAEVFIDS-TGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIAR---YEVP--G 270 (326)
T ss_dssp TTTCEEEEEEBCTTTCCBSSCCEEEEEC-TTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEE---EECS--C
T ss_pred CCCCEEEEEEcccccCCcccCceEEEEC-CCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEE---EECC--C
Confidence 456889999985 44 2 22222 1233456789999999887777777899999984 333322 2222 2
Q ss_pred cceEEEEEc-CCCCEEEEEcCC
Q 007855 517 GYACQVNFS-PDGRFVMSGDGE 537 (587)
Q Consensus 517 ~~i~~l~~s-pdg~~L~sgs~d 537 (587)
..+.+++|+ ++++.|++++..
T Consensus 271 ~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 271 KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SBEEEEEEESTTSCEEEEEEBC
T ss_pred CCcEEEEEecCCCCEEEEEecC
Confidence 457789998 888877655443
No 227
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=1.8e-09 Score=121.47 Aligned_cols=242 Identities=15% Similarity=0.190 Sum_probs=153.9
Q ss_pred CCCCCeEEEEEccCCCcEEEE-----EeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCe-----
Q 007855 294 GHTKGVSAIRFFPKYGHLILS-----AGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKN----- 363 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~s-----gs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~----- 363 (587)
+|...|..++|||+ |++||- |+...+|++||+ .+++.+... .+......++|+ ||+.|+.++.+..
T Consensus 126 ~~~~~l~~~~~SpD-g~~lAy~~~~~G~~~~~i~v~dl-~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~ 201 (693)
T 3iuj_A 126 DGTTALDQLSFSRD-GRILAYSLSLAGSDWREIHLMDV-ESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSEL 201 (693)
T ss_dssp TSCCEEEEEEECTT-SSEEEEEEECSSCCEEEEEEEET-TTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC----
T ss_pred CCcEEEEEEEECCC-CCEEEEEEecCCCceEEEEEEEC-CCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccc
Confidence 46667999999999 777763 333367999999 677655431 111113678999 9999999888743
Q ss_pred --------EEEEECCCCcE--EEEeecCC----cceEEEEccCCCCCcEEEEEeCC---CcEEEEeCCCCc-EEEEEccC
Q 007855 364 --------IKYWDTETGQV--IRTFSTGK----IPYVVKLNPDDDKQNILLAGMSD---KKIVQWDMNTKE-ITQEYDQH 425 (587)
Q Consensus 364 --------I~vWd~~t~~~--i~~~~~~~----~~~~~~~~~~~~~~~~l~sg~~d---g~I~iwD~~t~~-~~~~~~~h 425 (587)
|.+|++.+++. ...+.... ....+.+++++ ..++++...+ ..|+++|+.++. ....+..+
T Consensus 202 ~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~ 279 (693)
T 3iuj_A 202 SARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDD--RFLLISAANSTSGNRLYVKDLSQENAPLLTVQGD 279 (693)
T ss_dssp ---CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTS--CEEEEEEESSSSCCEEEEEETTSTTCCCEEEECS
T ss_pred cccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCC--CEEEEEEccCCCCcEEEEEECCCCCCceEEEeCC
Confidence 99999987652 33333322 23345566644 3455554432 589999998763 34455556
Q ss_pred CCCeeEEEEecCCCEEEEEEC-C---CCEEEEECCCCeE--EEEeecCCCcceeEEEEeCCCCEEEEEECCC---eEEEE
Q 007855 426 LGAVNTITFVDNNRRFVTSSD-D---KSLRVWEFGIPVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDN---QILIY 496 (587)
Q Consensus 426 ~~~I~~i~~sp~~~~l~s~s~-D---g~I~iwd~~~~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg---~I~iw 496 (587)
....... +++++..|+..+. + +.|.++++..+.. ...+. ++...+. .|++++++|+....++ .|.+|
T Consensus 280 ~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 280 LDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred CCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 6666555 5566666555543 3 5799999987643 22332 2433443 8889898887776554 68889
Q ss_pred EcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC----CcEEEEeCCCCee
Q 007855 497 STRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE----GKCWFWDWKSCKV 550 (587)
Q Consensus 497 d~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d----G~I~vwd~~t~~~ 550 (587)
++..+... .+ .+.+ .+.+..+.+++++..|+....+ +.|+.||+.+++.
T Consensus 356 d~~g~~~~-~l-~~p~---~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 356 DYEGKRVR-EV-ALPG---LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp CTTSCEEE-EE-CCSS---SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred ECCCCeeE-Ee-ecCC---CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeE
Confidence 88754321 11 1111 2456667788888877655444 7899999987753
No 228
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=1.3e-08 Score=114.09 Aligned_cols=257 Identities=12% Similarity=0.103 Sum_probs=170.7
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEccc-C----CceeeEEEecCCCeEEEEeC------CCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-S----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~----~~V~~l~fs~dg~~l~s~s~------Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.|+.|..+|. .+++.+..+..+ . ..+.+--.. .+..+++++. ++.|..+|..+|+.+..
T Consensus 128 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~ 205 (677)
T 1kb0_A 128 KGKVYVGAWDGRLIALDA-ATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWR 205 (677)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEE
Confidence 567888899999999999 789888887654 2 122221111 2345555543 79999999999999988
Q ss_pred eecCCcc---------------------------------eEEEEccCCCCCcEEEEEeCCC------------------
Q 007855 378 FSTGKIP---------------------------------YVVKLNPDDDKQNILLAGMSDK------------------ 406 (587)
Q Consensus 378 ~~~~~~~---------------------------------~~~~~~~~~~~~~~l~sg~~dg------------------ 406 (587)
+...... ..+.+.+. ..+++++..++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~---~~~vy~~~~~~~~w~~~~~~~~~gd~~~~ 282 (677)
T 1kb0_A 206 WFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE---LNTMYVGTGNGSPWSHKVRSPKGGDNLYL 282 (677)
T ss_dssp EESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTT
T ss_pred eccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC---CCEEEEECCCCccccCCCCCccCCCCeee
Confidence 8653221 12333333 34677776654
Q ss_pred -cEEEEeCCCCcEEEEEcc--CC-------CCeeEEEEecCC---CEEEEEECCCCEEEEECCCCeEEEEeecCCCc---
Q 007855 407 -KIVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDNN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPHMH--- 470 (587)
Q Consensus 407 -~I~iwD~~t~~~~~~~~~--h~-------~~I~~i~~sp~~---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~--- 470 (587)
.|..+|..+++.+..++. |. .....+....+| ..+++++.+|.|+++|..+++.+..+......
T Consensus 283 ~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~ 362 (677)
T 1kb0_A 283 ASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (677)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred EEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCccc
Confidence 599999999999887754 21 122223333467 67899999999999999999887665422110
Q ss_pred -------ce------------------------eEEEEeCCCCEEEEEECC-----------------------------
Q 007855 471 -------SM------------------------PSISLHPNTNWLAAQSLD----------------------------- 490 (587)
Q Consensus 471 -------~i------------------------~~i~~sp~g~~l~~~s~d----------------------------- 490 (587)
.+ ..++++|++.++++...+
T Consensus 363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 442 (677)
T 1kb0_A 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT 442 (677)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence 01 257889988888876542
Q ss_pred --------------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec
Q 007855 491 --------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC 556 (587)
Q Consensus 491 --------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~ 556 (587)
|.|..||+.+++.+-.... . ..+....++..+.++++++.+|.|++||..+++.+..+..
T Consensus 443 g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~-----~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 443 AKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-V-----SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp CEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-S-----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccCCCCCccEEEEEeCCCCcEEeecCC-C-----CCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 7799999988866543321 1 1122234556788999999999999999999999999985
Q ss_pred CCC-CEEEEEEcCCCCCEEEE
Q 007855 557 HEG-VCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 557 h~~-~V~~v~~sp~~~~~l~s 576 (587)
..+ ...-+.|..++..+++.
T Consensus 517 ~~~~~~~p~~y~~~G~~~v~~ 537 (677)
T 1kb0_A 517 GTGVVAAPSTYMVDGRQYVSV 537 (677)
T ss_dssp SSCCCSCCEEEEETTEEEEEE
T ss_pred CCCcccCCEEEEeCCEEEEEE
Confidence 542 22334555534334444
No 229
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.14 E-value=2.5e-09 Score=120.42 Aligned_cols=237 Identities=11% Similarity=0.070 Sum_probs=147.0
Q ss_pred cCCceeeEEEecCCCeEEEEe-----CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC-------
Q 007855 339 HSKAVRDISFCNDGTKFLTAS-----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK------- 406 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s-----~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg------- 406 (587)
|...+..++|||||++|+-+. ....|++||+.+++.+...........+.|+ ++. .|+.+..+.
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~---~l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNE---GFFYSSYDKPDGSELS 202 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTT---EEEEEESSCCC-----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCC---EEEEEEecCccccccc
Confidence 555788999999999888432 2357999999999876542211112345566 543 455555553
Q ss_pred ------cEEEEeCCCCcE--EEEEc--c-CCCCeeEEEEecCCCEEEEEEC----CCCEEEEECCCCe-EEEEeecCCCc
Q 007855 407 ------KIVQWDMNTKEI--TQEYD--Q-HLGAVNTITFVDNNRRFVTSSD----DKSLRVWEFGIPV-VIKYISEPHMH 470 (587)
Q Consensus 407 ------~I~iwD~~t~~~--~~~~~--~-h~~~I~~i~~sp~~~~l~s~s~----Dg~I~iwd~~~~~-~~~~~~~~~~~ 470 (587)
.|++|++.+... ...+. . |...+.++.|+|++++|+.... ...|+++|+..+. ....+.. +..
T Consensus 203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~~~ 281 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-DLD 281 (693)
T ss_dssp --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-SSS
T ss_pred ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-CCC
Confidence 499999987642 33333 3 4456788999999998866543 2479999997763 2333332 333
Q ss_pred ceeEEEEeCCCCEEEEEECC----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC-CC--cEEEE
Q 007855 471 SMPSISLHPNTNWLAAQSLD----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG-EG--KCWFW 543 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~d----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-dG--~I~vw 543 (587)
..... +++++..|+..+.. +.|.++++.++... ....+..+. ..+. .|++++++|+.... +| .|++|
T Consensus 282 ~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~-~~~~l~~~~--~~~~--~~s~~g~~lv~~~~~~g~~~l~~~ 355 (693)
T 3iuj_A 282 ADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPA-HWRDLIPER--QQVL--TVHSGSGYLFAEYMVDATARVEQF 355 (693)
T ss_dssp SCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGG-GCEEEECCC--SSCE--EEEEETTEEEEEEEETTEEEEEEE
T ss_pred ceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCcc-ccEEEecCC--CCEE--EEEEECCEEEEEEEECCeeEEEEE
Confidence 34443 66666666655542 67999998765321 112233332 2222 88999998876654 43 68999
Q ss_pred eCCCCeeEEEEec-CCCCEEEEEEcCCCCCEEEEEECC---CcEEEcC
Q 007855 544 DWKSCKVFRTLKC-HEGVCIGCEWHPLEQSKVATCGWD---GLIKYWD 587 (587)
Q Consensus 544 d~~t~~~~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~D---G~I~iWD 587 (587)
++..+. ...+.. +.+.+..+.+++++..++++.+.. +.|..||
T Consensus 356 d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d 402 (693)
T 3iuj_A 356 DYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE 402 (693)
T ss_dssp CTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred ECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence 987544 444543 445677788888555555554432 6677765
No 230
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=1e-07 Score=99.25 Aligned_cols=226 Identities=15% Similarity=0.152 Sum_probs=151.0
Q ss_pred EEe--cCCCeEEE-EeCCCeEEEEECCCC----cEEEEee-------cC-CcceEEEEccCCCCCcEEEEEeCC------
Q 007855 347 SFC--NDGTKFLT-ASYDKNIKYWDTETG----QVIRTFS-------TG-KIPYVVKLNPDDDKQNILLAGMSD------ 405 (587)
Q Consensus 347 ~fs--~dg~~l~s-~s~Dg~I~vWd~~t~----~~i~~~~-------~~-~~~~~~~~~~~~~~~~~l~sg~~d------ 405 (587)
.++ .++++|+. +..++.|.|+|+.+. +.+..+. .+ ..+..+.+.|++ +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG----i~Vs~~g~~~g~~~ 163 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA----IYISALGNEEGEGP 163 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC----EEEEEEEETTSCSC
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe----EEEEcCCCcCCCCC
Confidence 346 77777765 455789999999766 6667663 12 234455566643 66666655
Q ss_pred CcEEEEeCCCCcEEEEEccCCCC---eeEEEEecCCCEEEEEE-------------------CCCCEEEEECCCCeEEEE
Q 007855 406 KKIVQWDMNTKEITQEYDQHLGA---VNTITFVDNNRRFVTSS-------------------DDKSLRVWEFGIPVVIKY 463 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h~~~---I~~i~~sp~~~~l~s~s-------------------~Dg~I~iwd~~~~~~~~~ 463 (587)
|.|.++|..+.+++..+.....+ -..+-|+|+++.++++. ...+|.+||+.+.+.+..
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~t 243 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHS 243 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeE
Confidence 78999999999999988633222 34588899999888885 368999999999888887
Q ss_pred eecCCC-cceeEEEE--eCCCCEEEEEE------CCCeEEEEEcCCceeecccce-------ecccc---------cccc
Q 007855 464 ISEPHM-HSMPSISL--HPNTNWLAAQS------LDNQILIYSTRERFQLNKKKR-------FAGHI---------VAGY 518 (587)
Q Consensus 464 ~~~~~~-~~i~~i~~--sp~g~~l~~~s------~dg~I~iwd~~~~~~~~~~~~-------~~~~~---------~~~~ 518 (587)
+..+.. .....+.| +|+++++++++ .++.|.+|....+. ...... ..+.. ....
T Consensus 244 I~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 244 LTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCc
Confidence 765422 23345555 99999988877 56788776654321 111111 00000 0134
Q ss_pred eEEEEEcCCCCEEEEEcC-CCcEEEEeCC---CCeeEEEEecCCC--------------CEEEEEEcCCCCCEEEEEE
Q 007855 519 ACQVNFSPDGRFVMSGDG-EGKCWFWDWK---SCKVFRTLKCHEG--------------VCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~-dG~I~vwd~~---t~~~~~~l~~h~~--------------~V~~v~~sp~~~~~l~s~g 578 (587)
...|.+|+||++|.++.. .+.|.+||+. +.+++..+..... .-..+.++| ++++|+.+.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSp-DGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISR-DGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECT-TSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcC-CCCEEEEEc
Confidence 567999999999987664 6789999985 3466666654311 247889999 566666655
No 231
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.08 E-value=4.6e-08 Score=101.83 Aligned_cols=225 Identities=14% Similarity=0.167 Sum_probs=149.4
Q ss_pred cCCCcEEEEEeCCCeEEEEecCCCC----eeeEEEc------c-cCCceeeEEEecCCCeEEEEeCC------CeEEEEE
Q 007855 306 PKYGHLILSAGMDTKVKIWDVFNSG----KCMRTYM------G-HSKAVRDISFCNDGTKFLTASYD------KNIKYWD 368 (587)
Q Consensus 306 p~~g~~L~sgs~Dg~I~iWd~~~~~----~~~~~~~------~-h~~~V~~l~fs~dg~~l~s~s~D------g~I~vWd 368 (587)
++...++++|-.+++|.|+|+ .+. +...++. . ....-..+..+|+| .++++..+ +.|.++|
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~-~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD 170 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDT-KPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLD 170 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEEC-CSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEEC
T ss_pred ccCCEEEEccCCCCeEEEEEC-CCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEE
Confidence 664556667788899999998 322 5556662 1 11244567888999 77776655 7899999
Q ss_pred CCCCcEEEEeecCC----cceEEEEccCCCCCcEEEEEe-------------------CCCcEEEEeCCCCcEEEEEccC
Q 007855 369 TETGQVIRTFSTGK----IPYVVKLNPDDDKQNILLAGM-------------------SDKKIVQWDMNTKEITQEYDQH 425 (587)
Q Consensus 369 ~~t~~~i~~~~~~~----~~~~~~~~~~~~~~~~l~sg~-------------------~dg~I~iwD~~t~~~~~~~~~h 425 (587)
..+++.+.++..+. ..+-+.++|.. +.+++.. ....|.+||+.+++.++++...
T Consensus 171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~---~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg 247 (462)
T 2ece_A 171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPN---EVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG 247 (462)
T ss_dssp TTTCCEEEECCSBCTTCCCCCCEEEETTT---TEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred CCCCeEEEEEccCCCCccccceEEECCCC---CEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence 99999999997542 23446667654 3566653 3689999999999888887653
Q ss_pred -C-CCeeEEEE--ecCCCEEEEEE------CCCCEEEEECCCCeE--EEEeecCC-----------------CcceeEEE
Q 007855 426 -L-GAVNTITF--VDNNRRFVTSS------DDKSLRVWEFGIPVV--IKYISEPH-----------------MHSMPSIS 476 (587)
Q Consensus 426 -~-~~I~~i~~--sp~~~~l~s~s------~Dg~I~iwd~~~~~~--~~~~~~~~-----------------~~~i~~i~ 476 (587)
. .....|.| +|+++++++++ .+++|.+|....+.. .+.+..+. ......|.
T Consensus 248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~ 327 (462)
T 2ece_A 248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID 327 (462)
T ss_dssp TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence 1 23455656 99999987776 566888776654321 11110010 13467899
Q ss_pred EeCCCCEEEEEEC-CCeEEEEEcCCceeeccccee-cc-----------cccccceEEEEEcCCCCEEEEEc
Q 007855 477 LHPNTNWLAAQSL-DNQILIYSTRERFQLNKKKRF-AG-----------HIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 477 ~sp~g~~l~~~s~-dg~I~iwd~~~~~~~~~~~~~-~~-----------~~~~~~i~~l~~spdg~~L~sgs 535 (587)
++++|++|.++.. .+.|.+||+............ .+ ....+.-..++++|||++|+++.
T Consensus 328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999999988876 589999998633211111111 11 10111345699999999999888
No 232
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=5.6e-11 Score=123.39 Aligned_cols=223 Identities=10% Similarity=0.066 Sum_probs=124.2
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVK 388 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~ 388 (587)
+.+|++++.||.|+.||. .+++.+..+.. ..+.+..+..++..+++++.|+.|..||..+|+.+..+....... +.
T Consensus 9 ~~~v~~gs~dg~v~a~d~-~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~~ 84 (369)
T 2hz6_A 9 ETLLFVSTLDGSLHAVSK-RTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-VQ 84 (369)
T ss_dssp TTEEEEEETTSEEEEEET-TTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH-HT
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-cc
Confidence 678999999999999999 78998888876 566666667788888888899999999999998877664331110 01
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 468 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 468 (587)
..|.-.....+++|+.++.|+.||..+|+.+..+..+. .+.++|++..+++++.++.|+.||..+++.+..+...
T Consensus 85 ~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~- 159 (369)
T 2hz6_A 85 ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYF- 159 (369)
T ss_dssp TCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEE-
T ss_pred cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEecc-
Confidence 11111012467888889999999999999888776543 2345668888999999999999999887755443211
Q ss_pred CcceeEEEEeCCC---CEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEE----EEEcCCCcEE
Q 007855 469 MHSMPSISLHPNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFV----MSGDGEGKCW 541 (587)
Q Consensus 469 ~~~i~~i~~sp~g---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L----~sgs~dG~I~ 541 (587)
.....++..+. ..+++++.+|.|+.||..++..+-... +. ...+....++++|... +.+ ++.++
T Consensus 160 --~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-~~----~pv~~~~~~~~dg~~~v~~~~~~--~~~l~ 230 (369)
T 2hz6_A 160 --DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN-YA----SPVVAFYVWQREGLRKVMHINVA--VETLR 230 (369)
T ss_dssp --EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE-CS----SCEEEEEECTTSSCEEECCEEEE--HHHHH
T ss_pred --cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec-CC----CceEEEEEecCCceEeccceeec--cccee
Confidence 11222333322 567788999999999998876543322 11 1112234556666432 122 33455
Q ss_pred EEeCCCCe
Q 007855 542 FWDWKSCK 549 (587)
Q Consensus 542 vwd~~t~~ 549 (587)
++|..+|+
T Consensus 231 ~ld~~tG~ 238 (369)
T 2hz6_A 231 YLTFMSGE 238 (369)
T ss_dssp HHHHHHHH
T ss_pred eeehhcCC
Confidence 56655555
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.05 E-value=7.7e-09 Score=104.32 Aligned_cols=262 Identities=9% Similarity=0.022 Sum_probs=166.8
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV 374 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~ 374 (587)
+...+.++...++ +. |+.++.+ |..+|. +++.+..+......+....+. +..|+.++.++.|..+|.. ++.
T Consensus 58 ~~~~~~~~~~~~~-g~-l~v~t~~--l~~~d~--~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~ 128 (330)
T 3hxj_A 58 GEIIECRPSIGKD-GT-IYFGSDK--VYAINP--DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE 128 (330)
T ss_dssp GGEEEECCEETTT-TE-ECCSSCE--EEEECC--CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE
T ss_pred CCCcccceEEecC-Cc-EEEecCc--EEEECC--CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE
Confidence 3344567777666 54 4445544 777875 454443333333333344444 5567888889999999998 877
Q ss_pred EEEeecCCcc-eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEE
Q 007855 375 IRTFSTGKIP-YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVW 453 (587)
Q Consensus 375 i~~~~~~~~~-~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iw 453 (587)
+..+...... ........ ..+++++.++.|..||.. ++.+..+......+.++.+.+++..++. + +.|..+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~----g~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~-t--~~l~~~ 200 (330)
T 3hxj_A 129 KWRFKTKKAIYATPIVSED----GTIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFG-S--DKVYAI 200 (330)
T ss_dssp EEEEECSSCCCSCCEECTT----SCEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEE-S--SSEEEE
T ss_pred EEEEcCCCceeeeeEEcCC----CEEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEE-e--CEEEEE
Confidence 7666544322 22222222 237778888999999999 8877777666667788888777775544 4 889999
Q ss_pred ECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEE
Q 007855 454 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMS 533 (587)
Q Consensus 454 d~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~s 533 (587)
| .++........ ....+.++...+++. |.+++.++.|..++... ..+..... . ...+..+.+.+++ .|..
T Consensus 201 d-~~g~~~~~~~~-~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g-~~~~~~~~-~----~~~~~~~~~~~~g-~l~v 270 (330)
T 3hxj_A 201 N-PDGTEKWNFYA-GYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG-TEKWRFKT-G----KRIESSPVIGNTD-TIYF 270 (330)
T ss_dssp C-TTSCEEEEECC-SSCCCSCCEECTTSC-EEEEETTTEEEEECTTS-CEEEEEEC-S----SCCCSCCEECTTS-CEEE
T ss_pred C-CCCcEEEEEcc-CCcceeceEECCCCe-EEEEcCCCeEEEECCCC-CEeEEeeC-C----CCccccceEcCCC-eEEE
Confidence 9 66555544432 345678888888775 56667788888887533 33222111 1 1112234455555 5667
Q ss_pred EcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 534 GDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 534 gs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
++.+|.|..+|. +++.+..+......+.++...+ ++ .|..++.+|.|++.
T Consensus 271 ~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~-~g-~l~~gt~~G~~~~~ 320 (330)
T 3hxj_A 271 GSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDE-NG-TIYFGTRNGKFYAL 320 (330)
T ss_dssp ECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECT-TC-CEEEECTTSCEEEE
T ss_pred ecCCCCEEEECC-CCcEEEEEEcCCccccceEEcC-CC-EEEEEcCCCeEEEE
Confidence 888889999995 7887777776666666777765 44 47778899998763
No 234
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=120.85 Aligned_cols=195 Identities=14% Similarity=0.081 Sum_probs=113.4
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCC-e
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGA-V 429 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~-I 429 (587)
++..|++++.|+.|..||..+|+.+..+.. .......+.. .+.++++++.|+.|+.||..+++.+..+..+... +
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~---~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~ 83 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHV---EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV 83 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC--------CCEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEc---CCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence 577899999999999999999999998876 3332222222 2346777789999999999999877666543211 1
Q ss_pred e-EEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 430 N-TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 430 ~-~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
. +..+. .+..+++++.++.|+.||..+++.+..+.... ...++|++..|++++.++.|+.||..++..+....
T Consensus 84 ~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 157 (369)
T 2hz6_A 84 QASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF-----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT 157 (369)
T ss_dssp TTCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEE
T ss_pred ccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe
Confidence 1 11111 34567888889999999999988776654321 23456688899999999999999998876543322
Q ss_pred eecccccccceEEEEEcCCC---CEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEE
Q 007855 509 RFAGHIVAGYACQVNFSPDG---RFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIG 563 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg---~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~ 563 (587)
. ... ....++.+. ..+++++.+|.|+.||..+|+.+..+.. ..++..
T Consensus 158 ~-~~~------~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~-~~pv~~ 207 (369)
T 2hz6_A 158 Y-FDY------AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY-ASPVVA 207 (369)
T ss_dssp E-EEE------CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC-SSCEEE
T ss_pred c-ccc------cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC-CCceEE
Confidence 1 111 112333432 4677788999999999999999888774 344443
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.98 E-value=3e-08 Score=110.91 Aligned_cols=273 Identities=14% Similarity=0.112 Sum_probs=176.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc----------e-eeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA----------V-RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~----------V-~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.++.|..+|. .+++.+..+...... + ..+++ .+..|+.++.|+.|..+|..+|+.+..
T Consensus 66 ~g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~ 142 (668)
T 1kv9_A 66 DGVIYTSMSWSRVIAVDA-ASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWS 142 (668)
T ss_dssp TTEEEEEEGGGEEEEEET-TTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCEEEEECCCCeEEEEEC-CCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeee
Confidence 456777778899999999 788888887643221 0 12233 355788888999999999999999988
Q ss_pred eecCCcc--eEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCC-----------------------
Q 007855 378 FSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHL----------------------- 426 (587)
Q Consensus 378 ~~~~~~~--~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~----------------------- 426 (587)
+...... ..+...|.-.. ..++++.. +|.|..+|..+++.+..+....
T Consensus 143 ~~~~~~~~~~~~~~~P~v~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 143 QQTTDPAKPYSITGAPRVVK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp EECSCTTSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred eccCCCCCcceecCCCEEEC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 8763211 00000110011 24555543 5899999999999988775311
Q ss_pred --------CCeeEEEEecCCCEEEEEECCC-------------------CEEEEECCCCeEEEEeecC-CC-------cc
Q 007855 427 --------GAVNTITFVDNNRRFVTSSDDK-------------------SLRVWEFGIPVVIKYISEP-HM-------HS 471 (587)
Q Consensus 427 --------~~I~~i~~sp~~~~l~s~s~Dg-------------------~I~iwd~~~~~~~~~~~~~-~~-------~~ 471 (587)
.....+++.+....++.++.++ .|..+|..+++.+-.+... +. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888888887766 3999999999888776543 21 22
Q ss_pred eeEEEEeCCCC---EEEEEECCCeEEEEEcCCceeecccceec-----------ccc---------ccc-----------
Q 007855 472 MPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA-----------GHI---------VAG----------- 517 (587)
Q Consensus 472 i~~i~~sp~g~---~l~~~s~dg~I~iwd~~~~~~~~~~~~~~-----------~~~---------~~~----------- 517 (587)
+....+..+|+ .|+.++.+|.++++|..++..+....... +.. ...
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~ 381 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH 381 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCcccc
Confidence 22233334665 68889999999999998887652211100 000 000
Q ss_pred ceEEEEEcCCCCEEEEE------------------------------------cCCCcEEEEeCCCCeeEEEEecCCCCE
Q 007855 518 YACQVNFSPDGRFVMSG------------------------------------DGEGKCWFWDWKSCKVFRTLKCHEGVC 561 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sg------------------------------------s~dG~I~vwd~~t~~~~~~l~~h~~~V 561 (587)
.-..++++|+..++++. ..+|.|..||+.+++.+.....+.. +
T Consensus 382 ~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~-~ 460 (668)
T 1kv9_A 382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTH-W 460 (668)
T ss_dssp CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSS-C
T ss_pred CCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCC-C
Confidence 00125778877666542 1247899999999999888775432 2
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 562 IGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 562 ~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
....+.. .+.+|+.++.||.|++||
T Consensus 461 ~~~~~~t-~gg~vf~g~~dg~l~a~d 485 (668)
T 1kv9_A 461 NGGTLST-AGNLVFQGTAAGQMHAYS 485 (668)
T ss_dssp CCCEEEE-TTTEEEEECTTSEEEEEE
T ss_pred cCceeEe-CCCEEEEECCcccchhhh
Confidence 2223333 456888899999999986
No 236
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.98 E-value=1.4e-06 Score=85.26 Aligned_cols=247 Identities=10% Similarity=-0.002 Sum_probs=153.3
Q ss_pred EEEEEeCCCeEEEEecCCCCee-----eEEEcccCCceeeEEEecCCCeEEEE-eCCCeEEEEECCCCcEEEEeecC-Cc
Q 007855 311 LILSAGMDTKVKIWDVFNSGKC-----MRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVIRTFSTG-KI 383 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~-----~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg~I~vWd~~t~~~i~~~~~~-~~ 383 (587)
+|+.+.. +.|+.+++. .... ...+......+..++|++++..|+.+ ...+.|.++++.++.....+... ..
T Consensus 3 ~l~~~~~-~~I~~~~~~-g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~ 80 (267)
T 1npe_A 3 HLLFAQT-GKIERLPLE-RNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS 80 (267)
T ss_dssp EEEEEEE-EEEEEEEES-SSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred EEEEEcC-CeEEEEEec-CcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence 4444443 478888883 3221 11222223457899999976655554 45789999999876544433332 45
Q ss_pred ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC---CCCEEEEECCCCeE
Q 007855 384 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD---DKSLRVWEFGIPVV 460 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~---Dg~I~iwd~~~~~~ 460 (587)
+..+++.+.. +.++++-...+.|.++++..................++++|++..|+.+.. .+.|..+++.....
T Consensus 81 p~~ia~d~~~--~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~ 158 (267)
T 1npe_A 81 PEGIALDHLG--RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR 158 (267)
T ss_dssp EEEEEEETTT--TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred ccEEEEEecC--CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence 6677776643 356666677789999998754333233333356789999997666665554 36788888765432
Q ss_pred EEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCc
Q 007855 461 IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGK 539 (587)
Q Consensus 461 ~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~ 539 (587)
..+..........+++++++..|+.+. ..+.|.++++......... .+ ......+++. .+.++++....+.
T Consensus 159 -~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~---~~---~~~P~gi~~d-~~~lyva~~~~~~ 230 (267)
T 1npe_A 159 -RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVL---EG---LQYPFAVTSY-GKNLYYTDWKTNS 230 (267)
T ss_dssp -EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEE---EC---CCSEEEEEEE-TTEEEEEETTTTE
T ss_pred -EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEe---cC---CCCceEEEEe-CCEEEEEECCCCe
Confidence 222222334578899999877665554 5689999998754322111 11 1222345554 3444444456789
Q ss_pred EEEEeCCCCeeEEEEecCCC-CEEEEEEcCC
Q 007855 540 CWFWDWKSCKVFRTLKCHEG-VCIGCEWHPL 569 (587)
Q Consensus 540 I~vwd~~t~~~~~~l~~h~~-~V~~v~~sp~ 569 (587)
|.++|..+++.+..+..... ...++++.|+
T Consensus 231 v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 231 VIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred EEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999999988875432 3677888873
No 237
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.98 E-value=7.2e-08 Score=103.75 Aligned_cols=229 Identities=9% Similarity=0.025 Sum_probs=152.3
Q ss_pred eEEEec-----CCCeEEEEeC-CCeEEEEECCCCcEEEE--eecCCcceEEEEccCCCCCcEEEEEe-------------
Q 007855 345 DISFCN-----DGTKFLTASY-DKNIKYWDTETGQVIRT--FSTGKIPYVVKLNPDDDKQNILLAGM------------- 403 (587)
Q Consensus 345 ~l~fs~-----dg~~l~s~s~-Dg~I~vWd~~t~~~i~~--~~~~~~~~~~~~~~~~~~~~~l~sg~------------- 403 (587)
....|. ||++|+.+.. +..|.+.|+.+.++... +..+..+..+.+...++. .++++++
T Consensus 89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~-~~v~~~~~~~~p~~~dg~~l 167 (595)
T 1fwx_A 89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRS-NYVFCNGEDETPLVNDGTNM 167 (595)
T ss_dssp CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBC-SEEEEEECSCEESSCSSSST
T ss_pred ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCC-cEEEEecccccccCCCCccc
Confidence 355555 7888877665 56799999999998884 444566666666421222 3455553
Q ss_pred -----CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC------------------------------
Q 007855 404 -----SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK------------------------------ 448 (587)
Q Consensus 404 -----~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg------------------------------ 448 (587)
.++.+.++|..+.+.+.++.-.. ....++++|+|+++++++.+.
T Consensus 168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~ 246 (595)
T 1fwx_A 168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA 246 (595)
T ss_dssp TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence 34689999999998888876433 456788999999999988553
Q ss_pred --------CEEEEECCC--CeE-EEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCcee-----ecccc-ee
Q 007855 449 --------SLRVWEFGI--PVV-IKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQ-----LNKKK-RF 510 (587)
Q Consensus 449 --------~I~iwd~~~--~~~-~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~-----~~~~~-~~ 510 (587)
.|.|.|..+ ... +..+. -.....++.++|+|+++++++ .+++|.++|+.+... +.... ..
T Consensus 247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~ 324 (595)
T 1fwx_A 247 AGDYQELNGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 324 (595)
T ss_dssp HTCSEEETTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEE
T ss_pred CCCeeEECcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceE
Confidence 466777766 333 34442 223556799999999887765 578999999985421 00000 11
Q ss_pred cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC----------CeeEEEEecCCCCEE-E----EEEcCCCCCEEE
Q 007855 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS----------CKVFRTLKCHEGVCI-G----CEWHPLEQSKVA 575 (587)
Q Consensus 511 ~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t----------~~~~~~l~~h~~~V~-~----v~~sp~~~~~l~ 575 (587)
...........++|+|+|...++.-.++.|.+||+.+ .+.+.++..|-.+-. + +..+| ++++|+
T Consensus 325 ~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~-DGk~l~ 403 (595)
T 1fwx_A 325 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDA-TNDWLV 403 (595)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTC-CSSEEE
T ss_pred EEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCC-CCCEEE
Confidence 1111233455699999994445667899999999977 677888887765421 1 13467 666777
Q ss_pred EEE
Q 007855 576 TCG 578 (587)
Q Consensus 576 s~g 578 (587)
++.
T Consensus 404 ~~N 406 (595)
T 1fwx_A 404 CLS 406 (595)
T ss_dssp EEE
T ss_pred EcC
Confidence 664
No 238
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.96 E-value=1.8e-07 Score=91.49 Aligned_cols=212 Identities=10% Similarity=0.061 Sum_probs=145.7
Q ss_pred eeeEEEcccCC--ceeeEEEecCCCeEEEEeC--CCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC
Q 007855 331 KCMRTYMGHSK--AVRDISFCNDGTKFLTASY--DKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 406 (587)
Q Consensus 331 ~~~~~~~~h~~--~V~~l~fs~dg~~l~s~s~--Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 406 (587)
+.+.++. |.. ....|.|++++.++++.+. ++.|+++|+.+++.+..+..+.......+...+ ..+.++.-.++
T Consensus 10 ~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g--~~lyv~t~~~~ 86 (266)
T 2iwa_A 10 EVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN--EKLYQVVWLKN 86 (266)
T ss_dssp EEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET--TEEEEEETTCS
T ss_pred eEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC--CEEEEEEecCC
Confidence 3455553 443 3679999998755555443 589999999999999998766554444444433 25666666789
Q ss_pred cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCC-c---ceeEEEEeCCCC
Q 007855 407 KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHM-H---SMPSISLHPNTN 482 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~-~---~i~~i~~sp~g~ 482 (587)
.+.++|..+.+.+.++...... ...+++++..++++..++.|.++|..+.+.+..+..... . .+..+.|. ++.
T Consensus 87 ~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~ 163 (266)
T 2iwa_A 87 IGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE 163 (266)
T ss_dssp EEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence 9999999999999888533122 233556787777777788999999999888887764321 1 35677787 665
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceec--------ccccccceEEEEEcCCCCEE-EEEcCCCcEEEEeCCCC
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFA--------GHIVAGYACQVNFSPDGRFV-MSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~--------~~~~~~~i~~l~~spdg~~L-~sgs~dG~I~vwd~~t~ 548 (587)
.++....++.|.+.|..++..+..+..-. ..........|+|+|+++.| +++...++|++.++...
T Consensus 164 lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 164 VWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 55544467999999999886654443210 01112345779999998755 56667888998887553
No 239
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.87 E-value=1e-07 Score=97.38 Aligned_cols=225 Identities=15% Similarity=0.067 Sum_probs=145.2
Q ss_pred CCCCCeEEEEEccCCCcEEEEEeC-----CCeEEEEecCCCCeeeEEEccc------CCceeeEEEecCCCeE-EEEe--
Q 007855 294 GHTKGVSAIRFFPKYGHLILSAGM-----DTKVKIWDVFNSGKCMRTYMGH------SKAVRDISFCNDGTKF-LTAS-- 359 (587)
Q Consensus 294 gH~~~V~~l~~sp~~g~~L~sgs~-----Dg~I~iWd~~~~~~~~~~~~~h------~~~V~~l~fs~dg~~l-~s~s-- 359 (587)
+|-..+.+|+++++ ++++++-.. ++.|.+||+ .+++.++.+... ...+..+++++++..+ ++-.
T Consensus 64 ~~~~~p~gv~~d~~-g~L~v~D~g~~~~~~~~i~~~d~-~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~ 141 (343)
T 2qe8_A 64 ITFDTVLGIKSDGN-GIVWMLDNGNQSKSVPKLVAWDT-LNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAP 141 (343)
T ss_dssp CCCSCEEEEEECSS-SEEEEEECHHHHTSCCEEEEEET-TTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCS
T ss_pred cceeEeeEEEEcCC-CcEEEEcCCCCcCCCCeEEEEEC-CCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCcc
Confidence 56678999999999 777666543 579999999 677777666432 2456899999865444 5544
Q ss_pred -CCCeEEEEECCCCcEEEEeecCCc--ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEec
Q 007855 360 -YDKNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVD 436 (587)
Q Consensus 360 -~Dg~I~vWd~~t~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp 436 (587)
.++.|.+||+.+++....+..+.. .....+.++ +..+.+...++.+..|. ..++.|+|+|
T Consensus 142 ~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~---g~~~~~~~~~g~~~~~~--------------~~~~gia~s~ 204 (343)
T 2qe8_A 142 DDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVID---GVPVQIGQPDGTVIRPH--------------LGVNGIVLDA 204 (343)
T ss_dssp GGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEET---TEECBEECTTSCEECCC--------------CCEEEEEECT
T ss_pred CCCCeEEEEECCCCCEEEEecCCCcccccccceeEC---CEEEEeccCCCceecee--------------cccceeEecc
Confidence 578999999999987766543111 000112222 23455556666665543 2467899999
Q ss_pred CCCEEEEEECCC-CEEEEECC---CCe--------EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 437 NNRRFVTSSDDK-SLRVWEFG---IPV--------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 437 ~~~~l~s~s~Dg-~I~iwd~~---~~~--------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
+++.|+++...+ .|..++.. ... .+... .+......++++++|.++++...++.|.+|+..++...
T Consensus 205 dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~ 282 (343)
T 2qe8_A 205 ENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY--SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK 282 (343)
T ss_dssp TSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE--EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE
T ss_pred CCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec--ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE
Confidence 999998887766 44444421 100 00111 12224567999999999999888999999998444321
Q ss_pred cccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEE
Q 007855 505 NKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 505 ~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vw 543 (587)
.... .........++|.++|.++++.+..+.+.+|
T Consensus 283 -~~~~---~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 283 -LLVT---DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp -EEEE---CGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred -EEEE---CCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 1111 1123457789999999888887766555444
No 240
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.87 E-value=1.3e-08 Score=102.65 Aligned_cols=250 Identities=11% Similarity=0.038 Sum_probs=158.9
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcc-eEEE
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIP-YVVK 388 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~-~~~~ 388 (587)
..|..++.++.|..|| .+++.+..+..+...+.++...+++. |+.++.+ |..+|. +++.+..+...... ....
T Consensus 31 g~l~v~t~~~~l~~~d--~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~ 104 (330)
T 3hxj_A 31 GTIYLGSSNKNLYAIN--TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFT 104 (330)
T ss_dssp SCEECSSTTTTTEEEC--TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEE
T ss_pred CeEEEEcCCCEEEEEC--CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCce
Confidence 3566677788888898 35666655554555567777776665 5555544 888886 55544333322211 1111
Q ss_pred EccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC
Q 007855 389 LNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH 468 (587)
Q Consensus 389 ~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~ 468 (587)
+. ...+++++.++.|..+|.. ++....+..+...+.++...+++. +++++.++.|..||.. +.....+.. .
T Consensus 105 ~~-----~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~-~ 175 (330)
T 3hxj_A 105 IF-----EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKT-N 175 (330)
T ss_dssp EE-----TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEEC-S
T ss_pred EE-----CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEec-C
Confidence 21 2458888889999999998 877777666666677777776766 6667788999999998 666555443 3
Q ss_pred CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 469 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 469 ~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
...+.++.+.+++.+++. + +.|..|| .++........ . ...+.++.+.++|. |..++.++.|..+| .++
T Consensus 176 ~~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~---~--~~~~~~~~~~~~g~-l~v~t~~~gl~~~~-~~g 244 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA---G--YWTVTRPAISEDGT-IYVTSLDGHLYAIN-PDG 244 (330)
T ss_dssp SCCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC---S--SCCCSCCEECTTSC-EEEEETTTEEEEEC-TTS
T ss_pred CCceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc---C--CcceeceEECCCCe-EEEEcCCCeEEEEC-CCC
Confidence 445677777777775544 4 7899999 45433322111 1 23355577788775 45566677888887 466
Q ss_pred eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 549 KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 549 ~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
+.+..+......+..+.+.+ ++ .|..++.+|.|..+|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~-~g-~l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 TEKWRFKTGKRIESSPVIGN-TD-TIYFGSYDGHLYAIN 281 (330)
T ss_dssp CEEEEEECSSCCCSCCEECT-TS-CEEEECTTCEEEEEC
T ss_pred CEeEEeeCCCCccccceEcC-CC-eEEEecCCCCEEEEC
Confidence 66666665544444455554 33 577778887777765
No 241
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.87 E-value=4.5e-07 Score=88.67 Aligned_cols=206 Identities=9% Similarity=-0.032 Sum_probs=138.3
Q ss_pred CcEEEEeecCCc--ceEEEEccCCCCCcEEEEEeC--CCcEEEEeCCCCcEEEEEccCC-CCeeEEEEecCCCEEEEEEC
Q 007855 372 GQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHL-GAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 372 ~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~--dg~I~iwD~~t~~~~~~~~~h~-~~I~~i~~sp~~~~l~s~s~ 446 (587)
.+.+.++..+.. +.-+.+.++ +.++++.+. ++.|.++|+.+++.+..+.-.. .....+++. .+..+++.-.
T Consensus 9 ~~vv~~~p~~~~~f~~Gl~~~~d---g~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~-g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFPHDPYAFTQGLVYAEN---DTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL-NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEECCTTCCEEEEEECST---TEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEETT
T ss_pred ceEEEEEECCCCCCcccEEEeCC---CeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe-CCEEEEEEec
Confidence 356667766654 345666653 244444443 5899999999999988875322 223356665 2344455556
Q ss_pred CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcC
Q 007855 447 DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP 526 (587)
Q Consensus 447 Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 526 (587)
++.|.++|..+.+.+..+..+ ... .+.++++++.|+++..++.|.++|..+......+..-.....-..+..+.|.
T Consensus 85 ~~~v~viD~~t~~v~~~i~~g-~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTHQ-MKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp CSEEEEEETTTTEEEEEEECC-SSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred CCEEEEEECCCCcEEEEEECC-CCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 789999999999998888644 122 2345667887777778899999999886655444332211111235567777
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-------------CCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 527 DGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 527 dg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
+|...+....++.|.+.|..+++.+..+... ....++++|+|++..+++|+...+.|.+
T Consensus 161 dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~ 232 (266)
T 2iwa_A 161 NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFE 232 (266)
T ss_dssp TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEE
Confidence 7755555556789999999999999988742 1356899999966667777777777654
No 242
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.86 E-value=3.6e-07 Score=88.51 Aligned_cols=195 Identities=10% Similarity=0.002 Sum_probs=134.9
Q ss_pred cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCe--eEEEEecCCCEEEEEECCCCE
Q 007855 373 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAV--NTITFVDNNRRFVTSSDDKSL 450 (587)
Q Consensus 373 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I--~~i~~sp~~~~l~s~s~Dg~I 450 (587)
+.+..+..........+..++ +.++++.+.+|.|+++|+.+++.+..+ - .... -.+++. .++.+++.-.++.+
T Consensus 44 ~Vv~~~phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~-g~~Ly~ltw~~~~v 118 (268)
T 3nok_A 44 HIIREYPHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD-GERLYQLTWTEGLL 118 (268)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC-SSCEEEEESSSCEE
T ss_pred EEEEEEcCCCccccceEEEEC--CEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe-CCEEEEEEccCCEE
Confidence 456667666666444444432 467888888899999999999988877 2 2333 335554 23455555678899
Q ss_pred EEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 451 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
.+||..+.+.+..+..+.. -..++ ++++.|+.+..++.|.++|..+...+..+........-..+..+.|. +|+.
T Consensus 119 ~V~D~~Tl~~~~ti~~~~e--GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~l 193 (268)
T 3nok_A 119 FTWSGMPPQRERTTRYSGE--GWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVI 193 (268)
T ss_dssp EEEETTTTEEEEEEECSSC--CCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEE
T ss_pred EEEECCcCcEEEEEeCCCc--eeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEE
Confidence 9999999999998865322 23333 56888888888999999999887665544433222112344567776 7765
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEEEecC-------------CCCEEEEEEcCCCCCEEEEE
Q 007855 531 VMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~ 577 (587)
.+..-....|.+.|..+++.+..+... ....++|+|+|....+++||
T Consensus 194 yanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 194 YANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 555556789999999999999888642 13679999999666666665
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=6.1e-07 Score=86.89 Aligned_cols=195 Identities=11% Similarity=0.049 Sum_probs=130.8
Q ss_pred cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC--cEEEEeCCCCcEEEEEccCCCCee--EEEEecCCCEEEE-EECC
Q 007855 373 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK--KIVQWDMNTKEITQEYDQHLGAVN--TITFVDNNRRFVT-SSDD 447 (587)
Q Consensus 373 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg--~I~iwD~~t~~~~~~~~~h~~~I~--~i~~sp~~~~l~s-~s~D 447 (587)
+.+.++.+......-.+...+ +.++.+.+.+| .|+++|+.+++.+..+.-.. ... .+++. +..|+. .-.+
T Consensus 32 ~vv~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~ 106 (262)
T 3nol_A 32 QIVHSYPHDTKAFTEGFFYRN--GYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKN 106 (262)
T ss_dssp EEEEEEECCTTCEEEEEEEET--TEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSS
T ss_pred EEEEEecCCCCcccceEEEEC--CEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeC
Confidence 456677766666444444332 35677777666 89999999999988876432 333 34544 444444 4458
Q ss_pred CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCC
Q 007855 448 KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPD 527 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 527 (587)
+.+.+||..+.+.+..+..+. ....++++++.|+.+..++.|.++|..+...+..+........-..+..+.|. +
T Consensus 107 ~~v~v~D~~t~~~~~ti~~~~----eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~ 181 (262)
T 3nol_A 107 GLGFVWNIRNLRQVRSFNYDG----EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-D 181 (262)
T ss_dssp SEEEEEETTTCCEEEEEECSS----CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-T
T ss_pred CEEEEEECccCcEEEEEECCC----CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-C
Confidence 899999999999998886533 22334457777777777889999999887655544432211111334456676 6
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeeEEEEecC------------CCCEEEEEEcCCCCCEEEEE
Q 007855 528 GRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------EGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 528 g~~L~sgs~dG~I~vwd~~t~~~~~~l~~h------------~~~V~~v~~sp~~~~~l~s~ 577 (587)
|+..+..-.+..|.+.|..+++.+..+... ....++|+|+|....+++||
T Consensus 182 G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 765555556889999999999999988752 23679999999555445544
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.83 E-value=4.8e-07 Score=87.60 Aligned_cols=198 Identities=10% Similarity=0.116 Sum_probs=137.0
Q ss_pred eeeEEEcccCC--ceeeEEEecCCCeEEEEeCCC--eEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC
Q 007855 331 KCMRTYMGHSK--AVRDISFCNDGTKFLTASYDK--NIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK 406 (587)
Q Consensus 331 ~~~~~~~~h~~--~V~~l~fs~dg~~l~s~s~Dg--~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg 406 (587)
+.++++ .|.. ....|.|+ ++.++.+.+.+| .|+++|+.+++.+..+..........+.+.+. .+.++.-.++
T Consensus 32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~--~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKD--KIVGLTWKNG 107 (262)
T ss_dssp EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETT--EEEEEESSSS
T ss_pred EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCC--EEEEEEeeCC
Confidence 345556 3443 34789998 677777777766 89999999999999998776655544444332 5666666789
Q ss_pred cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC-C---cceeEEEEeCCCC
Q 007855 407 KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISLHPNTN 482 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~---~~i~~i~~sp~g~ 482 (587)
.+.+||..+.+.+.++.... ....+++++..|+.+..++.|.++|..+.+.+..+.... . ..+..+.|. +|.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~ 183 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGE 183 (262)
T ss_dssp EEEEEETTTCCEEEEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEEECccCcEEEEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCE
Confidence 99999999999999887532 223333567777777667889999999988888775422 1 223456776 676
Q ss_pred EEEEEECCCeEEEEEcCCceeecccce--ec-----ccccccceEEEEEcCCCCEEEEEcC
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKR--FA-----GHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~--~~-----~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
.++..-.++.|.+.|..++..+..+.. +. ..........|+|+|+++.|++.+.
T Consensus 184 lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 184 IFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp EEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred EEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 555555788999999998876544332 11 1111235678999998887776654
No 245
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.82 E-value=1e-06 Score=96.76 Aligned_cols=276 Identities=12% Similarity=0.073 Sum_probs=168.0
Q ss_pred CcEEEEEeC-CCeEEEEecCCCCeeeEEEcccCCc-----------eeeEEEecCCCe----EEEEeCCCeEEEEECCCC
Q 007855 309 GHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHSKA-----------VRDISFCNDGTK----FLTASYDKNIKYWDTETG 372 (587)
Q Consensus 309 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~~-----------V~~l~fs~dg~~----l~s~s~Dg~I~vWd~~t~ 372 (587)
+..|+.++. ++.|.-+|...+++.+..+...... ...++++|.+.. |+.++.|+.|..+|..+|
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG 141 (599)
T 1w6s_A 62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG 141 (599)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence 345666666 7888888872367777766533211 123566444444 888889999999999999
Q ss_pred cEEEEeecCCcc--eEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCCCe---------------
Q 007855 373 QVIRTFSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAV--------------- 429 (587)
Q Consensus 373 ~~i~~~~~~~~~--~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~~I--------------- 429 (587)
+.+......... ..+...|.-.. ..+++++. ++.|+.+|..+++.+..+.......
T Consensus 142 ~~~W~~~~~~~~~~~~~~ssP~v~~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~ 220 (599)
T 1w6s_A 142 ETVWKVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHY 220 (599)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred CEEEeecCCCCCccceeecCCEEEC-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccc
Confidence 999887654310 00000000001 24556553 7999999999999887765322110
Q ss_pred -----------------------eEEEEecCCCEEEEEECC----------------CCEEEEECCCCeEEEEeecCCCc
Q 007855 430 -----------------------NTITFVDNNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 430 -----------------------~~i~~sp~~~~l~s~s~D----------------g~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
..+++.+...+++.++.+ +.|..+|..+++.+-.+...+..
T Consensus 221 g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d 300 (599)
T 1w6s_A 221 GQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHD 300 (599)
T ss_dssp CCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTC
T ss_pred cccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCc
Confidence 135666777788877665 37999999999887766543221
Q ss_pred --------ceeEEEEe-CCC---CEEEEEECCCeEEEEEcCCceeecccceec------------cccc-----------
Q 007855 471 --------SMPSISLH-PNT---NWLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHIV----------- 515 (587)
Q Consensus 471 --------~i~~i~~s-p~g---~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------------~~~~----------- 515 (587)
...-+... .+| ..++.++.+|.|+++|..++..+....... +...
T Consensus 301 ~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~ 380 (599)
T 1w6s_A 301 EWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDH 380 (599)
T ss_dssp SSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTC
T ss_pred cccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCC
Confidence 11112222 467 467778899999999998876654322110 0000
Q ss_pred -----------ccceEEEEEcCCCCEEEEE---------------------------------c------CCCcEEEEeC
Q 007855 516 -----------AGYACQVNFSPDGRFVMSG---------------------------------D------GEGKCWFWDW 545 (587)
Q Consensus 516 -----------~~~i~~l~~spdg~~L~sg---------------------------------s------~dG~I~vwd~ 545 (587)
...-..++++|+..+|++. + ..|.|..||+
T Consensus 381 ~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~ 460 (599)
T 1w6s_A 381 LAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNA 460 (599)
T ss_dssp CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECT
T ss_pred CccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEEC
Confidence 0000135667766655442 1 3478999999
Q ss_pred CCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 546 KSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 546 ~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++.+....... ++.+-.... .+.+|+.++.||.|+.||
T Consensus 461 ~tG~~~W~~~~~~-~~~~g~~~t-agg~vf~gt~dg~l~A~D 500 (599)
T 1w6s_A 461 ITGDYKWEKMERF-AVWGGTMAT-AGDLVFYGTLDGYLKARD 500 (599)
T ss_dssp TTCCEEEEEEESS-CCCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred CCCCEEeEecCCC-CccCcceEe-cCCEEEEECCCCeEEEEE
Confidence 9999888775321 111111111 345788889999999876
No 246
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.81 E-value=1e-06 Score=96.50 Aligned_cols=274 Identities=14% Similarity=0.116 Sum_probs=167.5
Q ss_pred CcEEEEEeC-CCeEEEEecCCCCeeeEEEcccCC-ce----------eeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE
Q 007855 309 GHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHSK-AV----------RDISFCNDGTKFLTASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 309 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~-~V----------~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~ 376 (587)
+..|+.++. ++.|.-+|...+++.+..+..... .+ ..+++ .+..++.++.|+.|..+|..+|+.+.
T Consensus 62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 345556666 788888886236777766643221 00 12233 35678888899999999999999998
Q ss_pred EeecCCcc--eEEEEccCCCCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCCC--------------------
Q 007855 377 TFSTGKIP--YVVKLNPDDDKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGA-------------------- 428 (587)
Q Consensus 377 ~~~~~~~~--~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~~-------------------- 428 (587)
.+...... ..+...|.-.+ ..+++++. ++.|..+|..+++.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v~~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~ 218 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFVAK-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFG 218 (571)
T ss_dssp EEECCCGGGTCBCCSCCEEET-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSS
T ss_pred EecCCCCCccceeccCCEEEC-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccc
Confidence 87654311 00110110011 24666665 799999999999988876532111
Q ss_pred ------------------eeEEEEecCCCEEEEEECC----------------CCEEEEECCCCeEEEEeecCCC-----
Q 007855 429 ------------------VNTITFVDNNRRFVTSSDD----------------KSLRVWEFGIPVVIKYISEPHM----- 469 (587)
Q Consensus 429 ------------------I~~i~~sp~~~~l~s~s~D----------------g~I~iwd~~~~~~~~~~~~~~~----- 469 (587)
...+++.+....++.++.+ +.|..+|..+++.+-.+...+.
T Consensus 219 ~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~ 298 (571)
T 2ad6_A 219 LGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDF 298 (571)
T ss_dssp HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred cccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCccccc
Confidence 0235667766677766532 2599999999988776643211
Q ss_pred ---cceeEEEEeCCCC---EEEEEECCCeEEEEEcCCceeecccceec------------cccc-----------ccc--
Q 007855 470 ---HSMPSISLHPNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GHIV-----------AGY-- 518 (587)
Q Consensus 470 ---~~i~~i~~sp~g~---~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------------~~~~-----------~~~-- 518 (587)
....-+....+|+ .++.++.+|.++++|..++..+.....-. +... ...
T Consensus 299 ~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~ 378 (571)
T 2ad6_A 299 AGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNI 378 (571)
T ss_dssp CCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEE
T ss_pred ccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEE
Confidence 1111122234674 57788889999999998876553322110 0000 000
Q ss_pred ---------eEEEEEcCCCCEEEEEc-------------------------------------CCCcEEEEeCCCCeeEE
Q 007855 519 ---------ACQVNFSPDGRFVMSGD-------------------------------------GEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 519 ---------i~~l~~spdg~~L~sgs-------------------------------------~dG~I~vwd~~t~~~~~ 552 (587)
-..++++|+..+|++.. .+|.|..||..+++.+.
T Consensus 379 ~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W 458 (571)
T 2ad6_A 379 CPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKW 458 (571)
T ss_dssp SSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEE
T ss_pred CCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEE
Confidence 01357888877776653 35789999999999988
Q ss_pred EEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 553 TLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 553 ~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
++..... +.+..... .+.+|+.++.||.|+.||
T Consensus 459 ~~~~~~~-~~~~~~~t-~gg~v~~g~~dg~l~a~D 491 (571)
T 2ad6_A 459 TKWEKFA-AWGGTLYT-KGGLVWYATLDGYLKALD 491 (571)
T ss_dssp EEEESSC-CCSBCEEE-TTTEEEEECTTSEEEEEE
T ss_pred EecCCCC-ccceeEEE-CCCEEEEEcCCCeEEEEE
Confidence 8764322 22222222 345778889999999886
No 247
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.79 E-value=2.4e-05 Score=89.24 Aligned_cols=277 Identities=9% Similarity=0.045 Sum_probs=172.0
Q ss_pred CCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc-------cCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG-------HSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~-------h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
+...|.+|...++ +.+.+ |+.++-|.+|+. .+++....... ....|.++...++|.+.+ |+.+ -|.+|
T Consensus 213 ~~~~i~~i~~d~~-g~lwi-gt~~~Gl~~~~~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~ 287 (795)
T 4a2l_A 213 GTKQIQAILQQSP-TRIWV-ATEGAGLFLINP-KTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIY 287 (795)
T ss_dssp -CCCEEEEEEEET-TEEEE-EEBSSCEEEEET-TTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEE
T ss_pred CCCeeEEEEEcCC-CCEEE-EECCCCeEEEeC-CCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheE
Confidence 3467899988877 65555 444434888987 44444332221 135699999988887554 4455 58999
Q ss_pred ECCCCcEEEEeecC------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-------CCCCeeEEEE
Q 007855 368 DTETGQVIRTFSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITF 434 (587)
Q Consensus 368 d~~t~~~i~~~~~~------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-------h~~~I~~i~~ 434 (587)
|..++......... ....+.++..+.. ..|.+|+.++-|..|+..++.... +.. ....|.++..
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~l~~~~V~~i~~ 364 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ--GGMWLGTYFGGLNYYHPIRNRFKN-IRNIPYKNSLSDNVVSCIVE 364 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT--SCEEEEESSSCEEEECGGGGSSEE-ECCCTTSSSCSCSSEEEEEE
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC--cCEEEEECCCCeEEeCCCcccceE-EcCCCCCCCCCCCeeEEEEE
Confidence 98877655433211 1122444444333 247888888889999876654322 211 2356899988
Q ss_pred ecCCCEEEEEECCCCEEEEECCCCeEEEEeec-------CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccc
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE-------PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKK 507 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-------~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~ 507 (587)
.+++. |.+|+.++-|..|+..+......... .....|.+++..+++..|.+|+.++-|.+|+..++.....
T Consensus 365 d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~- 442 (795)
T 4a2l_A 365 DKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENF- 442 (795)
T ss_dssp CTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEE-
T ss_pred CCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEe-
Confidence 87775 56678887899999887655443321 1235688999988888677788878899999876532211
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec------CCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC------HEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~------h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
...........|.++...++|.+.+.. .. -|.+||..+++....... +...|.++...+ ++.+. .|+..|
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lW-igt~~G 518 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLW-IGGEEG 518 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEE-EEESSC
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEE-EEeCCc
Confidence 110111223567888888888765544 44 588999887754332211 235688888877 45444 444444
Q ss_pred cEEEc
Q 007855 582 LIKYW 586 (587)
Q Consensus 582 ~I~iW 586 (587)
|.+|
T Consensus 519 -l~~~ 522 (795)
T 4a2l_A 519 -LSVF 522 (795)
T ss_dssp -EEEE
T ss_pred -eEEE
Confidence 4444
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.79 E-value=3e-06 Score=94.68 Aligned_cols=239 Identities=14% Similarity=0.193 Sum_probs=155.6
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccC----CceeeEEEecCCCeEEEEeC------CCeEEEEECCCCcEEEEe
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS----KAVRDISFCNDGTKFLTASY------DKNIKYWDTETGQVIRTF 378 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~l~fs~dg~~l~s~s~------Dg~I~vWd~~t~~~i~~~ 378 (587)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+--.-.++ .+++++. +|.|..+|..+|+.+..+
T Consensus 117 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~ 194 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDA-KTGKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF 194 (668)
T ss_dssp BTEEEEECTTSEEEEEET-TTCCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred CCEEEEEcCCCEEEEEEC-CCCCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence 457788889999999999 7888887765421 111111011134 4555433 589999999999999988
Q ss_pred ecCC-cc-------------------------------eEEEEccCCCCCcEEEEEeCCC-------------------c
Q 007855 379 STGK-IP-------------------------------YVVKLNPDDDKQNILLAGMSDK-------------------K 407 (587)
Q Consensus 379 ~~~~-~~-------------------------------~~~~~~~~~~~~~~l~sg~~dg-------------------~ 407 (587)
.... .+ ....+.+. ..++++++.++ .
T Consensus 195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~---~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~ 271 (668)
T 1kv9_A 195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE---LDLLYVGTGNGSPWNREVRSPGGGDNLYLSS 271 (668)
T ss_dssp ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT---TTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC---CCEEEEeCCCCCccccCCCCCCCCCceeeee
Confidence 6421 00 01233332 24677777665 3
Q ss_pred EEEEeCCCCcEEEEEcc--CC-------CCeeEEEEecCCC---EEEEEECCCCEEEEECCCCeEEEEeecCC-------
Q 007855 408 IVQWDMNTKEITQEYDQ--HL-------GAVNTITFVDNNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPH------- 468 (587)
Q Consensus 408 I~iwD~~t~~~~~~~~~--h~-------~~I~~i~~sp~~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------- 468 (587)
|..+|..+++.+..++. |. .++....+..+++ .++.++.+|.++++|..+++.+.......
T Consensus 272 v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 351 (668)
T 1kv9_A 272 ILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKV 351 (668)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEE
T ss_pred EEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccc
Confidence 99999999999888764 22 2333333334665 68899999999999999998874432211
Q ss_pred ----Ccc------------------------eeEEEEeCCCCEEEEEE--------------------------------
Q 007855 469 ----MHS------------------------MPSISLHPNTNWLAAQS-------------------------------- 488 (587)
Q Consensus 469 ----~~~------------------------i~~i~~sp~g~~l~~~s-------------------------------- 488 (587)
..+ -..++++|+..++++..
T Consensus 352 d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (668)
T 1kv9_A 352 DLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDV 431 (668)
T ss_dssp CTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCC
T ss_pred ccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCC
Confidence 000 11267788777666532
Q ss_pred ----CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCC
Q 007855 489 ----LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHE 558 (587)
Q Consensus 489 ----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~ 558 (587)
.+|.|..||+.++..+-...... . .....+...+.+|++|+.+|.|++||.++++.+..++...
T Consensus 432 p~~~~~g~l~A~D~~tG~~~W~~~~~~-~-----~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~ 499 (668)
T 1kv9_A 432 PAAVVSGALLAWDPVKQKAAWKVPYPT-H-----WNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQS 499 (668)
T ss_dssp CGGGCEEEEEEEETTTTEEEEEEEESS-S-----CCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSS
T ss_pred CCCCccceEEEEeCCCCcEEEEccCCC-C-----CcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCC
Confidence 23779999998886654332211 1 1112334467899999999999999999999999987654
No 249
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.79 E-value=2e-07 Score=100.34 Aligned_cols=235 Identities=9% Similarity=0.054 Sum_probs=157.0
Q ss_pred CCCcEE-EEEeCCCeEEEEecCCCCeeeEEEcc-cCCceeeEEE-e-cCCCeEEEEe------------------CCCeE
Q 007855 307 KYGHLI-LSAGMDTKVKIWDVFNSGKCMRTYMG-HSKAVRDISF-C-NDGTKFLTAS------------------YDKNI 364 (587)
Q Consensus 307 ~~g~~L-~sgs~Dg~I~iWd~~~~~~~~~~~~~-h~~~V~~l~f-s-~dg~~l~s~s------------------~Dg~I 364 (587)
+ |++| ++...++.|.+.|+ .+.++...+.- ....+..+++ + |++.++++++ +++.+
T Consensus 100 D-G~~lfVnd~~~~rVavIdl-~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v 177 (595)
T 1fwx_A 100 D-GRFLFMNDKANTRVARVRC-DVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF 177 (595)
T ss_dssp E-EEEEEEEETTTTEEEEEET-TTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred C-CCEEEEEcCCCCEEEEEEC-CCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence 5 4444 44555778999999 78888775532 2345888898 5 8999998884 34689
Q ss_pred EEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC--------------------------------------C
Q 007855 365 KYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--------------------------------------K 406 (587)
Q Consensus 365 ~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--------------------------------------g 406 (587)
.++|.++.+.+..+..+..+.-+.+.+++ .++++.+.+ +
T Consensus 178 tvID~~t~~v~~qI~Vgg~pd~~~~spdG---k~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~ 254 (595)
T 1fwx_A 178 TAVDADKWEVAWQVLVSGNLDNCDADYEG---KWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELN 254 (595)
T ss_dssp EEEETTTTEEEEEEEESSCCCCEEECSSS---SEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEET
T ss_pred EEEECCCCeEEEEEEeCCCccceEECCCC---CEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEEC
Confidence 99999999999998876667777777753 344444432 2
Q ss_pred cEEEEeCCC--CcE-EEEEccCCCCeeEEEEecCCCEEEEEE-CCCCEEEEECCCCe------------EEEEeecCCCc
Q 007855 407 KIVQWDMNT--KEI-TQEYDQHLGAVNTITFVDNNRRFVTSS-DDKSLRVWEFGIPV------------VIKYISEPHMH 470 (587)
Q Consensus 407 ~I~iwD~~t--~~~-~~~~~~h~~~I~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~------------~~~~~~~~~~~ 470 (587)
.|.+.|..+ +.. +..+.. .....++.++|||+++++++ .+.+|.++|+.+.. ....+ ....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipv-g~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v--~vG~ 331 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPI-ANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEP--ELGL 331 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEE-ESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECC--BCCS
T ss_pred cEEEEeCcccCCceeEEEEec-CCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEc--CCCC
Confidence 477788877 444 444432 34567899999999877765 57789999998652 33333 3445
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCce-------eecccceeccccccc---ceEEEEEcCCCCEEEEEcCC--C
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERF-------QLNKKKRFAGHIVAG---YACQVNFSPDGRFVMSGDGE--G 538 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~-------~~~~~~~~~~~~~~~---~i~~l~~spdg~~L~sgs~d--G 538 (587)
....++|+|+|...++...+++|.+|++.... .......+.-+...+ ....+.++|||++|++...- .
T Consensus 332 gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skd 411 (595)
T 1fwx_A 332 GPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKD 411 (595)
T ss_dssp CEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTT
T ss_pred CcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcc
Confidence 67899999999555566789999999987621 011122222221111 11124568999999987642 2
Q ss_pred cE-----------EEEeCCCCe
Q 007855 539 KC-----------WFWDWKSCK 549 (587)
Q Consensus 539 ~I-----------~vwd~~t~~ 549 (587)
++ .++|+..++
T Consensus 412 r~~~~gp~~~~~~ql~dis~~~ 433 (595)
T 1fwx_A 412 RFLNVGPLKPENDQLIDISGDK 433 (595)
T ss_dssp SSCCCCSSCCEEEEEEECSSSS
T ss_pred ccccCCCCCCCcceEEEcCCCc
Confidence 33 889996554
No 250
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.78 E-value=3.2e-06 Score=81.15 Aligned_cols=197 Identities=12% Similarity=0.025 Sum_probs=129.5
Q ss_pred cEEEEeecCCcceEEEEccCCCCCcEEEEEeCC--CcEEEEeCCCCcEEEEEccCCCC-eeEEEEecCCCEEEEEECCCC
Q 007855 373 QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDNNRRFVTSSDDKS 449 (587)
Q Consensus 373 ~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I~iwD~~t~~~~~~~~~h~~~-I~~i~~sp~~~~l~s~s~Dg~ 449 (587)
+.+..+.+......--+..++ +.++.+.+.. ..|+.+|+.+++.+..+.-.... --.+++. .++.++..-.++.
T Consensus 10 ~v~~~~phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~ 86 (243)
T 3mbr_X 10 RVVKRYPHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHE 86 (243)
T ss_dssp EEEEEEECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSE
T ss_pred EEEEEcCCCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCE
Confidence 456666665555533333332 3566666664 48999999999998887543221 1334544 3444555567889
Q ss_pred EEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 450 LRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
+.+||..+.+.+..+..+.. -..+ .+++..|+++..++.|.++|..+...+..+........-..+..+.+. +|+
T Consensus 87 v~v~D~~tl~~~~ti~~~~~--Gwgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ 161 (243)
T 3mbr_X 87 GFVYDLATLTPRARFRYPGE--GWAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGE 161 (243)
T ss_dssp EEEEETTTTEEEEEEECSSC--CCEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred EEEEECCcCcEEEEEeCCCC--ceEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCE
Confidence 99999999999998875432 2344 456777777777899999999887655544432221111334456665 666
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEEEecC-------------CCCEEEEEEcCCCCCEEEEE
Q 007855 530 FVMSGDGEGKCWFWDWKSCKVFRTLKCH-------------EGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 530 ~L~sgs~dG~I~vwd~~t~~~~~~l~~h-------------~~~V~~v~~sp~~~~~l~s~ 577 (587)
..+..-.+..|.+.|..+++.+..+... ....++|+|+|....+++||
T Consensus 162 lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 162 LLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 5555556779999999999999888732 13679999999555555554
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=2.7e-06 Score=93.13 Aligned_cols=238 Identities=14% Similarity=0.038 Sum_probs=151.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccC----Cceee-EEEecCCCeEEEEeC------CCeEEEEECCCCcEEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTASY------DKNIKYWDTETGQVIRT 377 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~-l~fs~dg~~l~s~s~------Dg~I~vWd~~t~~~i~~ 377 (587)
+..|+.++.|+.|..+|. .+++.+..+.... ..+.+ .... ++ .+++++. ++.|..+|..+|+.+.+
T Consensus 115 ~~~v~v~~~dg~l~alD~-~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 191 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDA-KTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWR 191 (571)
T ss_dssp TTEEEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEE
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEE
Confidence 457788888999999999 7888877654221 12221 1111 34 5555554 79999999999999988
Q ss_pred eecCCcc---------------------------------------eEEEEccCCCCCcEEEEEeCC-------------
Q 007855 378 FSTGKIP---------------------------------------YVVKLNPDDDKQNILLAGMSD------------- 405 (587)
Q Consensus 378 ~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~sg~~d------------- 405 (587)
+...... ..+.+.+. ..+++.+..+
T Consensus 192 ~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~---~g~vy~~~g~~~~~~~~~~~gd~ 268 (571)
T 2ad6_A 192 AFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK---LNLFYYGSGNPAPWNETMRPGDN 268 (571)
T ss_dssp EESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT---TTEEEEECCCCSCSCGGGSCSCC
T ss_pred EccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC---CCeEEEECCCCccccCCccCCCc
Confidence 8654321 01122221 2355555532
Q ss_pred ---CcEEEEeCCCCcEEEEEccC--CC----CeeE---EEEecCCC---EEEEEECCCCEEEEECCCCeEEEEeecCCC-
Q 007855 406 ---KKIVQWDMNTKEITQEYDQH--LG----AVNT---ITFVDNNR---RFVTSSDDKSLRVWEFGIPVVIKYISEPHM- 469 (587)
Q Consensus 406 ---g~I~iwD~~t~~~~~~~~~h--~~----~I~~---i~~sp~~~---~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~- 469 (587)
+.|..+|..+++.+..++.. .. .+.. +....+++ .++.++.+|.|+++|..+++.+........
T Consensus 269 ~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 269 KWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp TTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTC
T ss_pred eeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCc
Confidence 35999999999998877532 11 1112 22224674 577888899999999999888766543220
Q ss_pred -----------cce--------------------------eEEEEeCCCCEEEEEEC-----------------------
Q 007855 470 -----------HSM--------------------------PSISLHPNTNWLAAQSL----------------------- 489 (587)
Q Consensus 470 -----------~~i--------------------------~~i~~sp~g~~l~~~s~----------------------- 489 (587)
.++ ..++++|+..+|++.+.
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~ 428 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGAT 428 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEE
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCcccccc
Confidence 111 24678888777776642
Q ss_pred --------------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 490 --------------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 490 --------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
++.|..||+.++..+-.... ...... ..+...+..|+.++.+|.|+.||.++++++.+++
T Consensus 429 ~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~-~~~~~~-----~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~ 502 (571)
T 2ad6_A 429 LAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE-KFAAWG-----GTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE-SSCCCS-----BCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceeccCccccCCCCCCeEEEEECCCCCEEEEecC-CCCccc-----eeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence 47888899887765433221 111111 1122346678889999999999999999999987
Q ss_pred cCC
Q 007855 556 CHE 558 (587)
Q Consensus 556 ~h~ 558 (587)
...
T Consensus 503 ~~~ 505 (571)
T 2ad6_A 503 MPS 505 (571)
T ss_dssp CSS
T ss_pred CCC
Confidence 543
No 252
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.73 E-value=4.6e-06 Score=91.49 Aligned_cols=271 Identities=15% Similarity=0.092 Sum_probs=165.1
Q ss_pred cEEEEEeCCCeEEEEecCCCCeeeEEEcccCCc---------eeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKA---------VRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~---------V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 380 (587)
..|+.++.++.|.-+|. .+++.+..+...... ...+++ .+..++.++.|+.|..+|..+|+.+..+..
T Consensus 69 g~vyv~~~~~~v~AlD~-~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~ 145 (582)
T 1flg_A 69 GVIYVTASYSRLFALDA-KTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKF 145 (582)
T ss_dssp TEEEEEETTTEEEEEES-SSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred CEEEEEcCCCCEEEEEC-CCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecC
Confidence 34555555445888998 788888777543221 022233 355788888999999999999999988765
Q ss_pred CCc--------ceEEEEccCC-CCCcEEEEEeC------CCcEEEEeCCCCcEEEEEccCCCCe----------------
Q 007855 381 GKI--------PYVVKLNPDD-DKQNILLAGMS------DKKIVQWDMNTKEITQEYDQHLGAV---------------- 429 (587)
Q Consensus 381 ~~~--------~~~~~~~~~~-~~~~~l~sg~~------dg~I~iwD~~t~~~~~~~~~h~~~I---------------- 429 (587)
... ..++. ... .....+++++. ++.|..+|..+++.+.........+
T Consensus 146 ~~~~~~~~~~~sP~v~--~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~ 223 (582)
T 1flg_A 146 ADHGAGYTMTGAPTIV--KDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKA 223 (582)
T ss_dssp SCGGGTCBCCSCCEEE--ECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTC
T ss_pred CCCCcCcccccCCEEe--CCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccc
Confidence 431 11111 111 11125666653 7899999999999877653211000
Q ss_pred -------------------------eEEEEecCCCEEEEEEC--------------------C----CCEEEEECCCCeE
Q 007855 430 -------------------------NTITFVDNNRRFVTSSD--------------------D----KSLRVWEFGIPVV 460 (587)
Q Consensus 430 -------------------------~~i~~sp~~~~l~s~s~--------------------D----g~I~iwd~~~~~~ 460 (587)
..+++.|...++++++. | +.|..+|..+++.
T Consensus 224 ~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~ 303 (582)
T 1flg_A 224 PSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEV 303 (582)
T ss_dssp TTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCE
T ss_pred ccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCE
Confidence 23566677777777663 2 5799999999988
Q ss_pred EEEeecCCCc--------ceeEEEEe-CCCC---EEEEEECCCeEEEEEcCCceeecccceec------------cc---
Q 007855 461 IKYISEPHMH--------SMPSISLH-PNTN---WLAAQSLDNQILIYSTRERFQLNKKKRFA------------GH--- 513 (587)
Q Consensus 461 ~~~~~~~~~~--------~i~~i~~s-p~g~---~l~~~s~dg~I~iwd~~~~~~~~~~~~~~------------~~--- 513 (587)
+-.+...+.. ...-+... .+|+ .|+.++.+|.|+++|..++..+.....-. +.
T Consensus 304 ~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~ 383 (582)
T 1flg_A 304 KWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVE 383 (582)
T ss_dssp EEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred EEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeE
Confidence 8776432211 11111221 4674 78889999999999998876553221110 00
Q ss_pred --------------ccccc-----------eEEEEEcCCCCEEEEEc---------------------------------
Q 007855 514 --------------IVAGY-----------ACQVNFSPDGRFVMSGD--------------------------------- 535 (587)
Q Consensus 514 --------------~~~~~-----------i~~l~~spdg~~L~sgs--------------------------------- 535 (587)
..... -..++++|+..++++..
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~ 463 (582)
T 1flg_A 384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD 463 (582)
T ss_dssp CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred ccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCC
Confidence 00000 01246677655554432
Q ss_pred CCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 536 GEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 536 ~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
..|.|..||+.+++.+.+...+.. +..-.... .+.+|+.++.||.|+.||
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agglvf~g~~dg~l~A~D 513 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHLP-LWAGVLAT-AGNLVFTGTGDGYFKAFD 513 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESSC-CCSCCEEE-TTTEEEEECTTSEEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCCC-CcccceEe-CCCEEEEECCCCcEEEEE
Confidence 358899999999999887764322 11111111 345788899999999886
No 253
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.71 E-value=2.9e-05 Score=88.44 Aligned_cols=276 Identities=10% Similarity=0.034 Sum_probs=167.5
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEE-cccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEE
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTY-MGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRT 377 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~-~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~ 377 (587)
|.+|...++ +.+.+ ++.++-|..|+. ..++..... ..+...|.+|...+++.+.+ ++.++-|.+||..+++....
T Consensus 175 i~~i~~d~~-g~lwi-gt~~~Gl~~~~~-~~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~ 250 (795)
T 4a2l_A 175 IASTLYRQG-DQIYI-GTSTDGLYTYSI-TQKTFEKVIPILGTKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNY 250 (795)
T ss_dssp CEEEEEEET-TEEEE-EESSSCEEEEET-TTCCEEECC----CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEE
T ss_pred eEEEEECCC-CCEEE-EECCCCEEEEeC-CCCeEEEecCCCCCCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEe
Confidence 888888877 65555 555545888887 444433221 12356789998888776544 55444589999887765443
Q ss_pred eecC------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-------CCCCeeEEEEecCCCEEEEE
Q 007855 378 FSTG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------HLGAVNTITFVDNNRRFVTS 444 (587)
Q Consensus 378 ~~~~------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-------h~~~I~~i~~sp~~~~l~s~ 444 (587)
.... ....+.++..+.. ..|.+|+.+ -|.+||..++........ ....|.+|...++|. |.+|
T Consensus 251 ~~~~~~~~~l~~~~i~~i~~d~~--g~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWig 326 (795)
T 4a2l_A 251 LHSPSNPKSISSNYIRSLAMDSQ--NRLWIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLG 326 (795)
T ss_dssp CCCTTCTTSCSCSBEEEEEECTT--SCEEEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEE
T ss_pred ecCCCCccccCCCeEEEEEEcCC--CCEEEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEE
Confidence 2211 1122344444332 236666665 689999887765433211 235699999988876 5667
Q ss_pred ECCCCEEEEECCCCeEEEEeec-----CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeeccccee--cc-cccc
Q 007855 445 SDDKSLRVWEFGIPVVIKYISE-----PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRF--AG-HIVA 516 (587)
Q Consensus 445 s~Dg~I~iwd~~~~~~~~~~~~-----~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~--~~-~~~~ 516 (587)
+.++-|.+|+............ .....|.++...++|. |.+|+.++-|..|+..++......... .. ....
T Consensus 327 t~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~ 405 (795)
T 4a2l_A 327 TYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGS 405 (795)
T ss_dssp ESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSC
T ss_pred ECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCC
Confidence 7778899998765433222211 1234588998888876 556777777999987654221111000 00 1123
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe----cCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK----CHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~----~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
..|.+++..++|++|.+|+.++-|.+||..+++...... .+...|.++...+ ++. |..|+.+| |.+|
T Consensus 406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~-lwigt~~G-l~~~ 476 (795)
T 4a2l_A 406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGN-LWLGTLSA-LVRF 476 (795)
T ss_dssp SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSC-EEEEESSC-EEEE
T ss_pred ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCC-EEEEecCc-eeEE
Confidence 567888888899867778877779999988876433221 1345788888877 444 44444454 4444
No 254
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.71 E-value=2.2e-05 Score=76.67 Aligned_cols=222 Identities=12% Similarity=0.044 Sum_probs=136.3
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-eCCCeEEEEECCCCcEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETGQVI 375 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg~I~vWd~~t~~~i 375 (587)
..+.+++|++.++.++++-...+.|..+++ ........+.........|++++++..|+.+ ...+.|.++++......
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~-~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~ 114 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASL-HGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEES-SSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEec-CCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEE
Confidence 357899999975677777777899999998 4433333333333567899999976555544 45689999998754432
Q ss_pred EEeecC-CcceEEEEccCCCCCcEEEEEeC--CCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE-ECCCCEE
Q 007855 376 RTFSTG-KIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS-SDDKSLR 451 (587)
Q Consensus 376 ~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~--dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~-s~Dg~I~ 451 (587)
...... ..+..+++.+.. +.++++... .+.|..+++................+.+++++++..|+.+ ...+.|.
T Consensus 115 ~~~~~~~~~P~~i~vd~~~--g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~ 192 (267)
T 1npe_A 115 VLFDTGLVNPRGIVTDPVR--GNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192 (267)
T ss_dssp EEECSSCSSEEEEEEETTT--TEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEeeCC--CEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEE
Confidence 223222 456667777643 345555443 4688888886433222222334568899999987666555 4567899
Q ss_pred EEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 452 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 452 iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
++++........+. .......+++. +..|+++. ..+.|.+++..++..+..+..-.. .....+++.|++.
T Consensus 193 ~~~~~g~~~~~~~~--~~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~----~~p~gi~~~~~~~ 263 (267)
T 1npe_A 193 CLNPAQPGRRKVLE--GLQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ----TRLYGITIALSQC 263 (267)
T ss_dssp EEETTEEEEEEEEE--CCCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC----CCCCCEEEECSCC
T ss_pred EEecCCCceEEEec--CCCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc----cccceeeecCccC
Confidence 99997654333332 22233566654 44555554 568999999987765543322110 1123467777654
No 255
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.70 E-value=1.3e-05 Score=76.96 Aligned_cols=193 Identities=14% Similarity=0.148 Sum_probs=136.9
Q ss_pred CCceEEEEcCCCC--CeEEEEEccCCCcEEEEEeCC--CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEe
Q 007855 285 PKRLVHTWSGHTK--GVSAIRFFPKYGHLILSAGMD--TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TAS 359 (587)
Q Consensus 285 p~~~i~tl~gH~~--~V~~l~~sp~~g~~L~sgs~D--g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s 359 (587)
..+++.++ .|.. -...|.|++ +.++.+.+.+ +.|+.+|+ .+++.+..+.-.. ..........+..|+ ..-
T Consensus 8 ~~~v~~~~-phd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~-~tgkv~~~~~l~~-~~fgeGi~~~~~~ly~ltw 82 (243)
T 3mbr_X 8 GYRVVKRY-PHDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDL-ETGRILQRAEVPP-PYFGAGIVAWRDRLIQLTW 82 (243)
T ss_dssp CEEEEEEE-ECCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEET-TTCCEEEEEECCT-TCCEEEEEEETTEEEEEES
T ss_pred ceEEEEEc-CCCCccccccEEEEC--CEEEEECCCCCCceEEEEEC-CCCCEEEEEeCCC-CcceeEEEEeCCEEEEEEe
Confidence 44677777 5654 466899985 5677777775 48999999 7888888775332 223332333344444 445
Q ss_pred CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-----CCeeEEEE
Q 007855 360 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITF 434 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-----~~I~~i~~ 434 (587)
.++.+.+||..+.+.+.++..+...+.++ +++ .. |+++..++.|.++|..+.+.+..+.-.. ..++.+.+
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~Gwglt--~dg--~~-L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~ 157 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGEGWALT--SDD--SH-LYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEW 157 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSCCCEEE--ECS--SC-EEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEE
T ss_pred eCCEEEEEECCcCcEEEEEeCCCCceEEe--eCC--CE-EEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEE
Confidence 68999999999999999999877666555 332 23 5555568899999999998888775422 35677777
Q ss_pred ecCCCEEEEEECCCCEEEEECCCCeEEEEeecC------------CCcceeEEEEeCCCCEEEEEE
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~~~s 488 (587)
. +++.++..-.+..|.+.|..+++.+..+... .......|+++|+++.|++.+
T Consensus 158 ~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 158 V-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp E-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred e-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 6 6665655556789999999999998887632 223568899999887777665
No 256
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.70 E-value=3.9e-06 Score=81.23 Aligned_cols=190 Identities=11% Similarity=0.130 Sum_probs=135.0
Q ss_pred ceEEEEcCCCC--CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCe
Q 007855 287 RLVHTWSGHTK--GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKN 363 (587)
Q Consensus 287 ~~i~tl~gH~~--~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~ 363 (587)
+++.++ .|.. -...|.|+. +.++++.+.+|.|+++|+ .+++.+..+ -...........++..|+ +.-.++.
T Consensus 44 ~Vv~~~-phd~~~ftqGL~~~~--~~Ly~stG~~g~v~~iD~-~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~ 117 (268)
T 3nok_A 44 HIIREY-PHATNAFTQGLVFHQ--GHFFESTGHQGTLRQLSL-ESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGL 117 (268)
T ss_dssp EEEEEE-ECCTTCCEEEEEEET--TEEEEEETTTTEEEECCS-SCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCE
T ss_pred EEEEEE-cCCCccccceEEEEC--CEEEEEcCCCCEEEEEEC-CCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCE
Confidence 567777 4443 347888873 688889999999999999 788888776 223343322333444444 4446899
Q ss_pred EEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC-----CCeeEEEEecCC
Q 007855 364 IKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL-----GAVNTITFVDNN 438 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~-----~~I~~i~~sp~~ 438 (587)
+.+||..+.+.+.++......+.++ +++ ..|+.+..++.|.++|..+.+.+..+.-.. ..++.+.|. +|
T Consensus 118 v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg---~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG 191 (268)
T 3nok_A 118 LFTWSGMPPQRERTTRYSGEGWGLC--YWN---GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NG 191 (268)
T ss_dssp EEEEETTTTEEEEEEECSSCCCCEE--EET---TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT
T ss_pred EEEEECCcCcEEEEEeCCCceeEEe--cCC---CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CC
Confidence 9999999999999998766555444 322 345555668999999999999888775422 245778887 67
Q ss_pred CEEEEEECCCCEEEEECCCCeEEEEeecC------------CCcceeEEEEeCCCCEEEEEE
Q 007855 439 RRFVTSSDDKSLRVWEFGIPVVIKYISEP------------HMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 439 ~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~------------~~~~i~~i~~sp~g~~l~~~s 488 (587)
+.++..-.+..|.+.|..+++.+..+... ...-...|+++|+++.|++.+
T Consensus 192 ~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 192 VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 65555556789999999999998887642 123568899999876665544
No 257
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.67 E-value=6.1e-06 Score=83.18 Aligned_cols=234 Identities=12% Similarity=0.097 Sum_probs=145.9
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec--------------------CCcceEEEEccCCCCCcEEE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILL 400 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~--------------------~~~~~~~~~~~~~~~~~~l~ 400 (587)
....+++|.+++++++++..++.|..|+..++........ ...+..+.+.+. .++ |+
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~--~g~-l~ 95 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQ--NNQ-LY 95 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETT--TTE-EE
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCC--CCc-EE
Confidence 4467889999998888888899999999887654322110 123455665541 223 55
Q ss_pred EEeCCCcEEEEeCCCCcEEEEE---cc-CCCCeeEEEEec-CCCEEEEEEC-----------------CCCEEEEECCCC
Q 007855 401 AGMSDKKIVQWDMNTKEITQEY---DQ-HLGAVNTITFVD-NNRRFVTSSD-----------------DKSLRVWEFGIP 458 (587)
Q Consensus 401 sg~~dg~I~iwD~~t~~~~~~~---~~-h~~~I~~i~~sp-~~~~l~s~s~-----------------Dg~I~iwd~~~~ 458 (587)
++...+.|..+|..++...... .+ .....+.+++.+ +|+.+++... ++.|..||..++
T Consensus 96 v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~ 175 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK 175 (322)
T ss_dssp EEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred EEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence 5555566889998766432211 11 123578899999 8877666532 367888888766
Q ss_pred eEEEEeecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC-
Q 007855 459 VVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG- 536 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~- 536 (587)
....... .......++++|++++|+++ +..+.|.+|++..... .....+.. ..+ ...+++.++|++.++...
T Consensus 176 ~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~-~~~~~~~~--~~g-P~gi~~d~~G~l~va~~~~ 249 (322)
T 2fp8_A 176 ETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK-GTAEVLVK--IPN-PGNIKRNADGHFWVSSSEE 249 (322)
T ss_dssp EEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT-TCEEEEEE--CSS-EEEEEECTTSCEEEEEEEE
T ss_pred EEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC-CccceEEe--CCC-CCCeEECCCCCEEEEecCc
Confidence 5433221 12345679999999876665 5568999999875211 11111111 112 556899999987666544
Q ss_pred ---------CCcEEEEeCCCCeeEEEEecCC----CCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 537 ---------EGKCWFWDWKSCKVFRTLKCHE----GVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 537 ---------dG~I~vwd~~t~~~~~~l~~h~----~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.+.|..+|. .++.+..+.... ..++++++. ++.++++....+.|.++
T Consensus 250 ~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~~--~g~L~v~~~~~~~i~~~ 309 (322)
T 2fp8_A 250 LDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQEH--DGLLYIGTLFHGSVGIL 309 (322)
T ss_dssp TTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEEE--TTEEEEECSSCSEEEEE
T ss_pred ccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEEe--CCEEEEeecCCCceEEE
Confidence 467888986 577777776543 346666663 45555555566677665
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.66 E-value=3.6e-05 Score=76.91 Aligned_cols=237 Identities=9% Similarity=0.012 Sum_probs=140.8
Q ss_pred eeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC--CcE
Q 007855 331 KCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD--KKI 408 (587)
Q Consensus 331 ~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d--g~I 408 (587)
+.+..+... .....++|+++++++++-..++.|..||... .....+.....+..+++.+++ +++++.... ..|
T Consensus 23 ~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG---~l~vad~~~~~~~v 97 (306)
T 2p4o_A 23 KIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNG---DLVATGWNADSIPV 97 (306)
T ss_dssp EEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECSSEEEEEEECTTS---CEEEEEECTTSCEE
T ss_pred eEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCC---cEEEEeccCCcceE
Confidence 344444332 4577899999998777766789999999875 445555555666677776643 455554433 247
Q ss_pred EEEeCCCCcEEEEEcc-CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE-EEEee------c--CCCcceeEEEEe
Q 007855 409 VQWDMNTKEITQEYDQ-HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV-IKYIS------E--PHMHSMPSISLH 478 (587)
Q Consensus 409 ~iwD~~t~~~~~~~~~-h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~-~~~~~------~--~~~~~i~~i~~s 478 (587)
..+|..+++....... .......++..+.+..+++-...+.|.++|...... +.... . ........+ +
T Consensus 98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s 175 (306)
T 2p4o_A 98 VSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--K 175 (306)
T ss_dssp EEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--E
T ss_pred EEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--C
Confidence 7788888875433321 223345556555554444444588899999876432 21110 0 111223444 7
Q ss_pred CCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE--EEe
Q 007855 479 PNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR--TLK 555 (587)
Q Consensus 479 p~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~--~l~ 555 (587)
+++++|+++ +..+.|..|++.....+.....+... .....++++++|+++++....+.|.+++.. ++... .+.
T Consensus 176 ~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~ 251 (306)
T 2p4o_A 176 RFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE 251 (306)
T ss_dssp EETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG
T ss_pred cCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc
Confidence 888766555 45689999998641111111111110 123348999999887777778899999975 65532 233
Q ss_pred cCCCCEEEEEEc---CCCCCEEEEEEC
Q 007855 556 CHEGVCIGCEWH---PLEQSKVATCGW 579 (587)
Q Consensus 556 ~h~~~V~~v~~s---p~~~~~l~s~g~ 579 (587)
......++++|. | +...|+.+..
T Consensus 252 ~~~~~p~~~a~~g~~~-d~~~LyVt~~ 277 (306)
T 2p4o_A 252 QGVIGSTAVAFGQTEG-DCTAIYVVTN 277 (306)
T ss_dssp GTCTTEEEEEECCSTT-TTTEEEEEEC
T ss_pred cccCCceEEEEecccC-CCCEEEEECC
Confidence 333568999998 6 4444544443
No 259
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.65 E-value=9e-06 Score=89.20 Aligned_cols=254 Identities=13% Similarity=0.098 Sum_probs=155.7
Q ss_pred EEEEeCCCeEEEEecCCCCeeeEEEcccC----Cceee-EEEecCCCeEEEEe------CCCeEEEEECCCCcEEEEeec
Q 007855 312 ILSAGMDTKVKIWDVFNSGKCMRTYMGHS----KAVRD-ISFCNDGTKFLTAS------YDKNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 312 L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~----~~V~~-l~fs~dg~~l~s~s------~Dg~I~vWd~~t~~~i~~~~~ 380 (587)
|+.++.|+.|..+|. .+++.+....... ..+.+ -.+. ++ .+++++ .++.|+.+|..+|+.+..+..
T Consensus 124 V~v~t~dg~l~AlDa-~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 124 ILKTQLDGNVAALNA-ETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp EEEECTTSEEEEEET-TTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEcCCCEEEEEEC-CCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcC
Confidence 778888999999999 7888877654321 12221 1111 44 455554 389999999999999988875
Q ss_pred CCcce---------------------------------------EEEEccCCCCCcEEEEEeCC----------------
Q 007855 381 GKIPY---------------------------------------VVKLNPDDDKQNILLAGMSD---------------- 405 (587)
Q Consensus 381 ~~~~~---------------------------------------~~~~~~~~~~~~~l~sg~~d---------------- 405 (587)
..... ...+.+ ...+++.++.+
T Consensus 201 ~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~---~~g~vy~g~g~~~p~~~~~r~gd~~y~ 277 (599)
T 1w6s_A 201 TGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP---GTNLIYFGTGNPAPWNETMRPGDNKWT 277 (599)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET---TTTEEEEECCCCSCSCGGGSCSCCTTS
T ss_pred CCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC---CCCEEEEeCCCCccccCcccCCCcccc
Confidence 43220 111222 23467777665
Q ss_pred CcEEEEeCCCCcEEEEEccCCC---------CeeEEEEe-cCC---CEEEEEECCCCEEEEECCCCeEEEEeecCC----
Q 007855 406 KKIVQWDMNTKEITQEYDQHLG---------AVNTITFV-DNN---RRFVTSSDDKSLRVWEFGIPVVIKYISEPH---- 468 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h~~---------~I~~i~~s-p~~---~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~---- 468 (587)
+.|..+|..+++.+..++.... ...-+... .++ ..++.++.+|.|+++|..+++.+.......
T Consensus 278 ~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~ 357 (599)
T 1w6s_A 278 MTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357 (599)
T ss_dssp SEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred ceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccc
Confidence 3899999999999887764321 11112222 456 467778899999999999998876554211
Q ss_pred --------Ccc--------------------------eeEEEEeCCCCEEEEEE--------------------------
Q 007855 469 --------MHS--------------------------MPSISLHPNTNWLAAQS-------------------------- 488 (587)
Q Consensus 469 --------~~~--------------------------i~~i~~sp~g~~l~~~s-------------------------- 488 (587)
..+ -..++++|+..+|++..
T Consensus 358 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~ 437 (599)
T 1w6s_A 358 FKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLN 437 (599)
T ss_dssp EEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred ccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccce
Confidence 011 12456777766665532
Q ss_pred -------------CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 489 -------------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 489 -------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
..|.|..||+.+++.+-.... ......+. +...+.+|+.++.||.|+.||.++|+.+.+++
T Consensus 438 ~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~-~~~~~~g~-----~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 438 MYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME-RFAVWGGT-----MATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE-SSCCCSBC-----EEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred eccCCcCCcccCCCcCeEEEEECCCCCEEeEecC-CCCccCcc-----eEecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 236777788777654433221 11111111 12256788889999999999999999999987
Q ss_pred cCCCCE-EEEEEcCCCCCEEEEE
Q 007855 556 CHEGVC-IGCEWHPLEQSKVATC 577 (587)
Q Consensus 556 ~h~~~V-~~v~~sp~~~~~l~s~ 577 (587)
...+.+ .-+.|..++..+|++.
T Consensus 512 l~~g~~~~P~~y~~~G~qyv~~~ 534 (599)
T 1w6s_A 512 IPSGAIGYPMTYTHKGTQYVAIY 534 (599)
T ss_dssp CSSCCCSCCEEEEETTEEEEEEE
T ss_pred CCCCcEeccEEEEeCCEEEEEEE
Confidence 554321 1234444233344443
No 260
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.65 E-value=2.1e-05 Score=79.14 Aligned_cols=244 Identities=11% Similarity=0.092 Sum_probs=143.3
Q ss_pred EEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc--------------------cCCceeeEEEec
Q 007855 291 TWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG--------------------HSKAVRDISFCN 350 (587)
Q Consensus 291 tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~--------------------h~~~V~~l~fs~ 350 (587)
.+.+.-....+++|.++ +.+++++..++.|..|+. ..+.. ..+.. ....+..|++.+
T Consensus 13 ~~~g~~~~p~~i~~d~~-g~~l~v~~~~~~i~~~~~-~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 13 LIEAPSYAPNSFTFDST-NKGFYTSVQDGRVIKYEG-PNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp EEECSSSCCCCEECCTT-CSSEEEECTTSEEEEECC-TTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred ecCCccCCceEEEEcCC-CCEEEEEcCCCeEEEECC-CCCce-EEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 34444445678889998 887888888999999987 33332 22221 113578899997
Q ss_pred -CCCeEEEEeCCCeEEEEECCCCcEEEEee--cC---CcceEEEEcc-CCCCCcEEEEEeC-----------------CC
Q 007855 351 -DGTKFLTASYDKNIKYWDTETGQVIRTFS--TG---KIPYVVKLNP-DDDKQNILLAGMS-----------------DK 406 (587)
Q Consensus 351 -dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~--~~---~~~~~~~~~~-~~~~~~~l~sg~~-----------------dg 406 (587)
++ .|+.+...+.|.++|..++....... .+ ..+..+.+.+ ++ +++++-.. .+
T Consensus 90 ~~g-~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G---~l~v~d~~~~~~~~~~~~~~~~~~~~g 165 (322)
T 2fp8_A 90 QNN-QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG---IVYFTDVSTLYDDRGVQQIMDTSDKTG 165 (322)
T ss_dssp TTT-EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC---CEEEEESCSSCCTTCHHHHHHHTCCCE
T ss_pred CCC-cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC---EEEEECCcccccccccceehcccCCCc
Confidence 55 45555555668888887654221111 11 1234455554 33 44444322 36
Q ss_pred cEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEE-ECCCCEEEEECCCCe--EEEEeecCCCcceeEEEEeCCCCE
Q 007855 407 KIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTS-SDDKSLRVWEFGIPV--VIKYISEPHMHSMPSISLHPNTNW 483 (587)
Q Consensus 407 ~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~-s~Dg~I~iwd~~~~~--~~~~~~~~~~~~i~~i~~sp~g~~ 483 (587)
.|..||..+++...... .....+.|+++++++.|+++ +..+.|.+|++.... ....+.. ... ...+++.++|++
T Consensus 166 ~v~~~d~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l 242 (322)
T 2fp8_A 166 RLIKYDPSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHF 242 (322)
T ss_dssp EEEEEETTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCE
T ss_pred eEEEEeCCCCEEEEecc-CCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCE
Confidence 78899987776433222 23456789999999876665 456889999987421 1111111 122 678999999987
Q ss_pred EEEEEC----------CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 484 LAAQSL----------DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 484 l~~~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
.++... .+.|..++.. +..+.......+.. ...++.+++ .++.++++....+.|.++++..
T Consensus 243 ~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~-~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 243 WVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA-GEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT-TSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc-cccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 666554 4678888864 33332222111111 123444555 3565555656677888888753
No 261
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.63 E-value=2.1e-05 Score=78.74 Aligned_cols=239 Identities=11% Similarity=0.040 Sum_probs=145.5
Q ss_pred CCCceEEEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC--
Q 007855 284 IPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-- 361 (587)
Q Consensus 284 ~p~~~i~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D-- 361 (587)
.+.+++..|..+ .....++|+++ +.++++-..++.|..|+. . +.....+. ....+..|++.++|+++++....
T Consensus 20 ~~~~~~~~~p~~-~~pegia~~~~-g~lyv~d~~~~~I~~~d~-~-g~~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 20 APAKIITSFPVN-TFLENLASAPD-GTIFVTNHEVGEIVSITP-D-GNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CCEEEEEEECTT-CCEEEEEECTT-SCEEEEETTTTEEEEECT-T-CCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred CCceEeEeCCCC-CCcceEEECCC-CCEEEEeCCCCeEEEECC-C-CceEEEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 345666777543 56889999998 888888778899999987 3 33333332 33568899999999866655432
Q ss_pred CeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEc---------cCCCCe
Q 007855 362 KNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYD---------QHLGAV 429 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~---------~h~~~I 429 (587)
..|..++..+++......... ....++..+ ...++++-..++.|+++|..++.. +.... ......
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~---~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~p 171 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLS---DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAA 171 (306)
T ss_dssp CEEEEEECTTSCEEEEEECTTCSCEEEEEESS---SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSE
T ss_pred ceEEEEcCCCCeEEEEEeCCCccccCcccccC---CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcC
Confidence 247777888887654433222 222223222 223444444689999999876532 21111 111234
Q ss_pred eEEEEecCCCEEEEE-ECCCCEEEEECCC-CeE--EEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 430 NTITFVDNNRRFVTS-SDDKSLRVWEFGI-PVV--IKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~-s~Dg~I~iwd~~~-~~~--~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+.| +++++.|+++ +..+.|.+|++.. +.. ...+.. ......++++++|+++++....+.|.+|+... ....
T Consensus 172 ngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G-~~~~ 246 (306)
T 2p4o_A 172 NGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTI 246 (306)
T ss_dssp EEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEE
T ss_pred CCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCCC-CEEE
Confidence 556 7777766555 4567899999864 211 111111 13456789999998877777788999998753 2211
Q ss_pred ccceecccccccceEEEEEc---CCCCEEEEEcCCC
Q 007855 506 KKKRFAGHIVAGYACQVNFS---PDGRFVMSGDGEG 538 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~s---pdg~~L~sgs~dG 538 (587)
....... ....++++|. |+++.|++.+..+
T Consensus 247 -~~~~~~~--~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 247 -IAQAEQG--VIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp -EECGGGT--CTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred -Eeecccc--cCCceEEEEecccCCCCEEEEECCCC
Confidence 1111111 2446779998 8988777666543
No 262
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.60 E-value=3.8e-05 Score=84.19 Aligned_cols=259 Identities=14% Similarity=0.163 Sum_probs=157.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCC----cee-eEEEec---CCC-eEEEEe------CCCeEEEEECCCCc
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSK----AVR-DISFCN---DGT-KFLTAS------YDKNIKYWDTETGQ 373 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~----~V~-~l~fs~---dg~-~l~s~s------~Dg~I~vWd~~t~~ 373 (587)
+..|+.++.|+.|..+|. .+++.+..+..... .+. ...... +|+ .+++++ .++.|..+|..+|+
T Consensus 117 ~~~v~~~t~dg~l~AlD~-~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~ 195 (582)
T 1flg_A 117 GDKVFFGTLDASVVALNK-NTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGE 195 (582)
T ss_dssp TTEEEEEETTTEEEEEES-SSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCC
T ss_pred CCEEEEEeCCCEEEEEEC-CCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCC
Confidence 457778888999999999 78888876653321 111 111121 233 565654 37899999999999
Q ss_pred EEEEeecCCcce------------------------------------------EEEEccCCCCCcEEEEEeC-------
Q 007855 374 VIRTFSTGKIPY------------------------------------------VVKLNPDDDKQNILLAGMS------- 404 (587)
Q Consensus 374 ~i~~~~~~~~~~------------------------------------------~~~~~~~~~~~~~l~sg~~------- 404 (587)
.+.......... ..++.+ ...+++++..
T Consensus 196 ~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~---~~g~vyv~~gn~~~~~~ 272 (582)
T 1flg_A 196 EIWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDA---ETNTIIVGAGNPGPWNT 272 (582)
T ss_dssp EEEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEET---TTTEEEEEECCBSSSCG
T ss_pred EEeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcC---CCCEEEEeCCCCCcccC
Confidence 988765431110 011111 2245666653
Q ss_pred -------------C----CcEEEEeCCCCcEEEEEcc--CCC----CeeE-EEEe---cCCC---EEEEEECCCCEEEEE
Q 007855 405 -------------D----KKIVQWDMNTKEITQEYDQ--HLG----AVNT-ITFV---DNNR---RFVTSSDDKSLRVWE 454 (587)
Q Consensus 405 -------------d----g~I~iwD~~t~~~~~~~~~--h~~----~I~~-i~~s---p~~~---~l~s~s~Dg~I~iwd 454 (587)
| +.|..+|..+++.+..++. |.. .+.. +.+. .+++ .++.++.+|.|+++|
T Consensus 273 ~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD 352 (582)
T 1flg_A 273 WARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVD 352 (582)
T ss_dssp GGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEE
T ss_pred cccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEE
Confidence 2 5899999999999888753 321 1111 1222 3563 688899999999999
Q ss_pred CCCCeEEEEeecCCC------------cc--------------------------------eeEEEEeCCCCEEEEEE--
Q 007855 455 FGIPVVIKYISEPHM------------HS--------------------------------MPSISLHPNTNWLAAQS-- 488 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~------------~~--------------------------------i~~i~~sp~g~~l~~~s-- 488 (587)
..+++.+..+..... .+ ...++++|...++++..
T Consensus 353 ~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~ 432 (582)
T 1flg_A 353 RSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANH 432 (582)
T ss_dssp TTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEEC
T ss_pred CCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechh
Confidence 999888765543210 00 01346666655555433
Q ss_pred -------------------------------CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 489 -------------------------------LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 489 -------------------------------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
.+|.|..||+.++..+-..... .....+. + ...+.+|+.|+.|
T Consensus 433 ~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~-~~~~~g~---~--~tagglvf~g~~d 506 (582)
T 1flg_A 433 WKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH-LPLWAGV---L--ATAGNLVFTGTGD 506 (582)
T ss_dssp EEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES-SCCCSCC---E--EETTTEEEEECTT
T ss_pred cceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCC-CCCcccc---e--EeCCCEEEEECCC
Confidence 2577888998887655333221 1111111 1 1246788889999
Q ss_pred CcEEEEeCCCCeeEEEEecCCCCE-EEEEEcCCCCCEEEEE
Q 007855 538 GKCWFWDWKSCKVFRTLKCHEGVC-IGCEWHPLEQSKVATC 577 (587)
Q Consensus 538 G~I~vwd~~t~~~~~~l~~h~~~V-~~v~~sp~~~~~l~s~ 577 (587)
|.|+.||.++|+.+.+++...+.+ .-+.|..++..+|++.
T Consensus 507 g~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~~~ 547 (582)
T 1flg_A 507 GYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT 547 (582)
T ss_dssp SEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred CcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEEEE
Confidence 999999999999999998654422 1245555333344443
No 263
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.51 E-value=0.00016 Score=82.07 Aligned_cols=278 Identities=8% Similarity=0.032 Sum_probs=164.5
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc--------------ccCCceeeEEEecCCCeEEEEeCC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM--------------GHSKAVRDISFCNDGTKFLTASYD 361 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~--------------~h~~~V~~l~fs~dg~~l~s~s~D 361 (587)
...|.+|...++ +. |..|+..+-|.+++. .......... -....|.+|...++|. |..|+.+
T Consensus 257 ~~~i~~i~~d~~-g~-lWigt~~~Gl~~~~~-~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~ 332 (781)
T 3v9f_A 257 SSYIFSIKQLKD-NK-LWIATELNGIMILDL-QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWG 332 (781)
T ss_dssp CCCEEEEEECTT-SE-EEEEESSSCEEEEET-TCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBS
T ss_pred CceEEEEEECCC-CC-EEEEeCCCCeEEECC-CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecC
Confidence 456999998877 55 445555455788887 3333222111 1345799999988876 6667777
Q ss_pred CeEEEEECCCCcEEEEeec-------C-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE---ccCCCCee
Q 007855 362 KNIKYWDTETGQVIRTFST-------G-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY---DQHLGAVN 430 (587)
Q Consensus 362 g~I~vWd~~t~~~i~~~~~-------~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~---~~h~~~I~ 430 (587)
+-|..++..++........ . ....+.++..+.. ..|.+|+.++-|..||..++...... ......|.
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ--GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT--SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC--CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 7899999876654332110 0 1122444444332 23777887788999998765432211 12346788
Q ss_pred EEEEecCCCEEEEEECCCCEEEEECCCCeEEEEee-cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccce
Q 007855 431 TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS-EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKR 509 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~ 509 (587)
++...+++. |.+|+.++.|..++..++....... ......|.++...+++. |.+++. +-|.+|+..++.... ...
T Consensus 411 ~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~-~~~ 486 (781)
T 3v9f_A 411 CSLKDSEGN-LWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIH-HYD 486 (781)
T ss_dssp EEEECTTSC-EEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCE-EEC
T ss_pred EEEECCCCC-EEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEe-ccc
Confidence 898887776 4557776779999987765433221 12345688888887775 555565 568889876543211 111
Q ss_pred ec-ccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec----CCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 510 FA-GHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC----HEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 510 ~~-~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~----h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
.. .......+.++...++|.+.+.....| |..||..+++.. .+.. ....|.++...+ ++. |..++..|.|.
T Consensus 487 ~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~-~g~-lWi~T~~Glv~ 562 (781)
T 3v9f_A 487 TSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSS-KGQ-MWLATGEGLVC 562 (781)
T ss_dssp TTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE-EECTTTTCSCSCEEEEEECT-TSC-EEEEETTEEEE
T ss_pred CcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE-EccCCCCCCCCeeEEEEECC-CCC-EEEEECCCceE
Confidence 11 111135678888999887655443344 788988766543 3321 234688888877 454 44445566646
Q ss_pred EcC
Q 007855 585 YWD 587 (587)
Q Consensus 585 iWD 587 (587)
.||
T Consensus 563 ~~d 565 (781)
T 3v9f_A 563 FPS 565 (781)
T ss_dssp ESC
T ss_pred EEC
Confidence 654
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.48 E-value=0.00014 Score=74.17 Aligned_cols=247 Identities=7% Similarity=-0.034 Sum_probs=151.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQV 374 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~ 374 (587)
....+|.+..+. +.+|++ . ...|+..++ ........+. ....+..++|++.+..|+ +-...+.|..+++..+..
T Consensus 33 ~d~~~C~~~~~~-~~ll~~-~-~~~I~~i~~-~g~~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~ 107 (349)
T 3v64_C 33 PDRRSCKALGPE-PVLLFA-N-RIDIRQVLP-HRSEYTLLLN-NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV 107 (349)
T ss_dssp TTSSCEEESSSC-CEEEEE-C-BSCEEEECT-TSCCEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred CCCCcccccccC-ceeEee-c-ccceEEEeC-CCCeeEEeec-CCCceEEEEEeccccEEEEEeccCCceEEEecCCCCc
Confidence 445667776664 444443 3 345777777 3333333333 344578999997655555 444678899999987664
Q ss_pred EEEeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-C-CCEE
Q 007855 375 IRTFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-D-KSLR 451 (587)
Q Consensus 375 i~~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-D-g~I~ 451 (587)
...+..+ ..+..+++.+. .++++++-...+.|.++++........+.........|++.|.+..|+.+.. . +.|.
T Consensus 108 ~~~~~~~~~~p~glavd~~--~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~ 185 (349)
T 3v64_C 108 EEVVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIE 185 (349)
T ss_dssp EEEECSSCSCCCEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred eEEEeCCCCCccEEEEecC--CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEE
Confidence 4433322 34556666653 3467777777889999998765544444445567899999986665555543 4 6788
Q ss_pred EEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCE
Q 007855 452 VWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRF 530 (587)
Q Consensus 452 iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 530 (587)
.+++...... .+..........++++|++..|+.+ +..+.|..+++........ .... ......+++ ..+.+
T Consensus 186 r~~~dG~~~~-~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~---~~~~--~~~P~giav-~~~~l 258 (349)
T 3v64_C 186 ASSMDGSGRR-IIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV---ISQG--LPHPFAITV-FEDSL 258 (349)
T ss_dssp EEETTSCSCE-ESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE---ECSS--CSSEEEEEE-ETTEE
T ss_pred EEeCCCCCcE-EEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEE---EeCC--CCCceEEEE-ECCEE
Confidence 8887654332 2222234456889999876666555 4567899999865322111 1111 123345666 34555
Q ss_pred EEEEcCCCcEEEEeCCCCeeEEEEec
Q 007855 531 VMSGDGEGKCWFWDWKSCKVFRTLKC 556 (587)
Q Consensus 531 L~sgs~dG~I~vwd~~t~~~~~~l~~ 556 (587)
+++-...+.|..++..+|+.+..+..
T Consensus 259 y~td~~~~~V~~~~~~~G~~~~~i~~ 284 (349)
T 3v64_C 259 YWTDWHTKSINSANKFTGKNQEIIRN 284 (349)
T ss_dssp EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred EEecCCCCeEEEEEccCCCccEEecc
Confidence 56666778899998767766665543
No 265
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.44 E-value=0.0002 Score=74.18 Aligned_cols=255 Identities=7% Similarity=-0.051 Sum_probs=155.3
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIR 376 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~ 376 (587)
.-+|.+..+. + +|+.+. ...|+..++ ........+ .....+..++|++.+..|+ +-...+.|..+++..+....
T Consensus 78 ~~~C~~~~~~-~-~l~~~~-~~~I~~i~~-~~~~~~~~~-~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~ 152 (386)
T 3v65_B 78 RRSCKALGPE-P-VLLFAN-RIDIRQVLP-HRSEYTLLL-NNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEE 152 (386)
T ss_dssp SSCEEECSSC-C-EEEEEC-BSCEEEECT-TSCCCEEEE-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEE
T ss_pred CCeECCcccc-c-eeEeec-Cccceeecc-CCCcEEEEe-cCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEE
Confidence 4456555553 4 333333 356888887 333333333 3345688999997555554 54567889999998776544
Q ss_pred EeecC-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-C-CCEEEE
Q 007855 377 TFSTG-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-D-KSLRVW 453 (587)
Q Consensus 377 ~~~~~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-D-g~I~iw 453 (587)
.+..+ ..+..+++.+. .++++++-...+.|.++++........+.........|++.|.+..|+.+.. . +.|..+
T Consensus 153 ~~~~~~~~p~glavd~~--~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~ 230 (386)
T 3v65_B 153 VVSTGLESPGGLAVDWV--HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEAS 230 (386)
T ss_dssp EECSSCSCCCCEEEETT--TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred EEeCCCCCccEEEEEeC--CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence 44322 24455666653 3466777777788999998765544444445567899999987666665544 3 578888
Q ss_pred ECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE
Q 007855 454 EFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 454 d~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
++........+ .........|+++|++..|+.+ +..+.|..+++........ +... ......+++ ..+.+++
T Consensus 231 ~~dG~~~~~~~-~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~---~~~~--~~~P~giav-~~~~ly~ 303 (386)
T 3v65_B 231 SMDGSGRRIIA-DTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV---ISQG--LPHPFAITV-FEDSLYW 303 (386)
T ss_dssp ETTSCSCEEEE-CSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE---ECSS--CSSEEEEEE-ETTEEEE
T ss_pred eCCCCCcEEEE-ECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE---EECC--CCCceEEEE-ECCEEEE
Confidence 87654433332 2234456889999876666555 4567899999865322111 1111 123345677 3455666
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEE
Q 007855 533 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEW 566 (587)
Q Consensus 533 sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~ 566 (587)
+-...+.|..++..+++.+..+........+|++
T Consensus 304 td~~~~~V~~~~~~~G~~~~~i~~~~~~p~gi~v 337 (386)
T 3v65_B 304 TDWHTKSINSANKFTGKNQEIIRNKLHFPMDIHT 337 (386)
T ss_dssp EETTTTEEEEEETTTCCSCEEEECSCSCCCCEEE
T ss_pred eeCCCCeEEEEECCCCcceEEEccCCCCCceEEE
Confidence 6667888999997777766666543333344433
No 266
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=7.7e-05 Score=78.57 Aligned_cols=240 Identities=10% Similarity=0.015 Sum_probs=142.0
Q ss_pred ceeeEEEec-CCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCC----cEEEEeCCCC
Q 007855 342 AVRDISFCN-DGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDK----KIVQWDMNTK 416 (587)
Q Consensus 342 ~V~~l~fs~-dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg----~I~iwD~~t~ 416 (587)
....|+|+| ++..|+.+...+.|+.+|+.++...........+..+++.+.+. .++++...++ .+.+++. .+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~--~lyvad~~~~~~~~~v~~~~~-~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEAD--SMIITNDQNNNDRPNNYILTR-ES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSS--EEEEEECCSCTTSEEEEEEEG-GG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCC--EEEEEeCCCCcccceEEEEeC-CC
Confidence 457899997 45566666655889999998877666555556677788877542 3455544332 2333443 22
Q ss_pred cEE--EEEccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE-ECCCe
Q 007855 417 EIT--QEYDQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ-SLDNQ 492 (587)
Q Consensus 417 ~~~--~~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~ 492 (587)
... ..+. .......++++| ++.++++-...+.|..++....................++++|++++|+++ ...+.
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~ 293 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY 293 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence 221 2222 234567888999 676666666778999999987765333333333456789999999955554 56788
Q ss_pred EEEEEcCCc-eeecccceeccc------c-------cccceE-EEEEc--------CCCCEEEEEcCCCcEEEEeCCCCe
Q 007855 493 ILIYSTRER-FQLNKKKRFAGH------I-------VAGYAC-QVNFS--------PDGRFVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 493 I~iwd~~~~-~~~~~~~~~~~~------~-------~~~~i~-~l~~s--------pdg~~L~sgs~dG~I~vwd~~t~~ 549 (587)
|..++.... ..+.....+.+. . .-.... .++.. ++|.+.++-..+++|+.++ .++.
T Consensus 294 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~-~~G~ 372 (430)
T 3tc9_A 294 ILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT-PQGR 372 (430)
T ss_dssp EEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC-TTSE
T ss_pred EEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC-CCCc
Confidence 999876531 111001111110 0 000112 34443 4466666666778899998 4565
Q ss_pred eEEEEec----C----C---------CCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 550 VFRTLKC----H----E---------GVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 550 ~~~~l~~----h----~---------~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.....-. . . .....+++.|.++.++++-.....|+.+
T Consensus 373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 426 (430)
T 3tc9_A 373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI 426 (430)
T ss_dssp EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence 4433321 0 1 1478999998546566665566777764
No 267
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.41 E-value=6.1e-06 Score=92.01 Aligned_cols=271 Identities=12% Similarity=0.046 Sum_probs=149.4
Q ss_pred EEEEccCCCcEEEEEeCCC-----------eEEEEecCCCCe--eeEEEc-ccCCceeeEEEecCCCeEEEEeC-CCeEE
Q 007855 301 AIRFFPKYGHLILSAGMDT-----------KVKIWDVFNSGK--CMRTYM-GHSKAVRDISFCNDGTKFLTASY-DKNIK 365 (587)
Q Consensus 301 ~l~~sp~~g~~L~sgs~Dg-----------~I~iWd~~~~~~--~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~-Dg~I~ 365 (587)
++++.+.++++++.|+.+. .+.+||. .+++ .+..+. .+.....++++..+++.++.|+. +..+.
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~-~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~ 268 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDP-STGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS 268 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECT-TTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeC-CCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence 4566673388888887543 6889998 4443 222222 23334456788889999999985 46899
Q ss_pred EEECCCCcEEEEee--cCCcceEEEEccCCCCCcEEEEEe-CC-----CcEEEEeCCCCcEEEEE----ccCCCCeeEEE
Q 007855 366 YWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGM-SD-----KKIVQWDMNTKEITQEY----DQHLGAVNTIT 433 (587)
Q Consensus 366 vWd~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~-~d-----g~I~iwD~~t~~~~~~~----~~h~~~I~~i~ 433 (587)
+||..+++....-. .......+.+.++ +.+++.|+ .+ ..+.+||..+......- ......-....
T Consensus 269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~d---g~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 269 LYDSSSDSWIPGPDMQVARGYQSSATMSD---GRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEEGGGTEEEECCCCSSCCSSCEEEECTT---SCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred EecCcCCceeECCCCCccccccceEEecC---CeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence 99998876544322 2222233444433 35777777 34 57999999887644320 00000000011
Q ss_pred EecCCCEEEEEECCC---------CEEEEECCCCeEEEEeecCC--------CcceeEEEEeC-CCCEEEEEECCC----
Q 007855 434 FVDNNRRFVTSSDDK---------SLRVWEFGIPVVIKYISEPH--------MHSMPSISLHP-NTNWLAAQSLDN---- 491 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg---------~I~iwd~~~~~~~~~~~~~~--------~~~i~~i~~sp-~g~~l~~~s~dg---- 491 (587)
+..++..++.++.+| .+..||..+........... ...-.++.+.. +++++++|+.++
T Consensus 346 ~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~ 425 (656)
T 1k3i_A 346 YRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDS 425 (656)
T ss_dssp GTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSS
T ss_pred eecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCC
Confidence 223455555555443 46788887665433222111 11223344433 677778877532
Q ss_pred -------eEEEEEcCCceeeccc-ceecccccccceEEEEEcCCCCEEEEEcCC-----------CcEEEEeCCCCeeEE
Q 007855 492 -------QILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----------GKCWFWDWKSCKVFR 552 (587)
Q Consensus 492 -------~I~iwd~~~~~~~~~~-~~~~~~~~~~~i~~l~~spdg~~L~sgs~d-----------G~I~vwd~~t~~~~~ 552 (587)
.|.+||..+..-.... ..+. ......+++..|+|++++.|+.+ ..+.+||..+.+-..
T Consensus 426 ~~~~~~~~v~~yd~~~~~W~~~~~~~mp---~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~ 502 (656)
T 1k3i_A 426 DATTNAHIITLGEPGTSPNTVFASNGLY---FARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYK 502 (656)
T ss_dssp BCCCCEEEEECCSTTSCCEEEECTTCCS---SCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEE
T ss_pred CcCCcceEEEcCCCCCCCeeEEccCCCC---CCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceee
Confidence 6777877653211111 0111 11122345677899999998854 468999987765322
Q ss_pred --EEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 553 --TLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 553 --~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
.+........++.+.| ++++++.||.
T Consensus 503 ~~~~~~~R~~hs~a~ll~-dg~v~v~GG~ 530 (656)
T 1k3i_A 503 QNPNSIVRVYHSISLLLP-DGRVFNGGGG 530 (656)
T ss_dssp CCCCSSCCCTTEEEEECT-TSCEEEEECC
T ss_pred cCCCCCccccccHhhcCC-CcEEEecCCC
Confidence 1111222223445567 7778888885
No 268
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.40 E-value=0.00059 Score=77.45 Aligned_cols=273 Identities=14% Similarity=0.056 Sum_probs=160.7
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-------ccCCceeeEEEecCCCeEEEEeCCCeEEEEEC
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-------GHSKAVRDISFCNDGTKFLTASYDKNIKYWDT 369 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-------~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~ 369 (587)
..|.+|...++ +.+.+. +.. -|.+||. .++....... .....|.+|...++|. |..|+..+-|.++|.
T Consensus 211 ~~i~~i~~d~~-g~lwig-t~~-Gl~~~d~-~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~ 285 (781)
T 3v9f_A 211 NDVRCIYKDTN-GNIWIG-TSK-GLALFNA-NTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDL 285 (781)
T ss_dssp SSEEEEEECTT-CCEEEE-ETT-EEEEEET-TTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEET
T ss_pred CceeEEEEcCC-CCEEEE-eCC-cHheECC-CCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECC
Confidence 56999988887 665554 444 5888987 4444332211 1245699999888776 555666566888998
Q ss_pred CCCcEEEEee-------cC------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc---------cCCC
Q 007855 370 ETGQVIRTFS-------TG------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD---------QHLG 427 (587)
Q Consensus 370 ~t~~~i~~~~-------~~------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~---------~h~~ 427 (587)
.++....... .. ....+.++..+.. ..|.+|+.++-|..++..+........ ....
T Consensus 286 ~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~--g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 363 (781)
T 3v9f_A 286 QQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSF--NNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNK 363 (781)
T ss_dssp TCC---------CEEECBCSSTTSBSSSCEEEEEECSS--CCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSS
T ss_pred CCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCC--CCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCc
Confidence 8765432221 10 1122344444433 247888888889999987664332210 1235
Q ss_pred CeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEee--cCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS--EPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~--~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
.|.++...+++. |.+|+.++-|.+|+..+........ ......|.++...+++. |.+|+.++-|..|+..++....
T Consensus 364 ~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~ 441 (781)
T 3v9f_A 364 VVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKFQI 441 (781)
T ss_dssp CEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEEEE
T ss_pred ceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcEEE
Confidence 688998887775 5566766779999986543322110 12345688888887776 4557777778999876543221
Q ss_pred ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC-----CCCEEEEEEcCCCCCEEEEEEC-
Q 007855 506 KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH-----EGVCIGCEWHPLEQSKVATCGW- 579 (587)
Q Consensus 506 ~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h-----~~~V~~v~~sp~~~~~l~s~g~- 579 (587)
... . ......|.++...++|.+.+ |+. +-|.+||..+++........ ...|.++...+ ++. |..|+.
T Consensus 442 -~~~-~-~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~-lWigt~~ 514 (781)
T 3v9f_A 442 -IEL-E-KNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDS-EGR-FWIGTFG 514 (781)
T ss_dssp -CCS-T-TTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECT-TCC-EEEEESS
T ss_pred -ecc-C-CCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcC-CCC-EEEEEcC
Confidence 110 0 11235677888888886544 444 56889998876654333222 35788888877 444 444554
Q ss_pred CCcEEEc
Q 007855 580 DGLIKYW 586 (587)
Q Consensus 580 DG~I~iW 586 (587)
.| |..|
T Consensus 515 ~G-l~~~ 520 (781)
T 3v9f_A 515 GG-VGIY 520 (781)
T ss_dssp SC-EEEE
T ss_pred CC-EEEE
Confidence 44 4444
No 269
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.39 E-value=0.0018 Score=65.24 Aligned_cols=269 Identities=9% Similarity=0.056 Sum_probs=147.8
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc----ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM----GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~----~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~ 372 (587)
..+.+|.|.+. +..+++ +..|.|.. .. ..++.-.... .....+.+|.|.+ +. ++.++..+.|.. ..+.|
T Consensus 36 ~~~~~v~~~~~-~~~~~~-G~~g~i~~-s~-DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g~~g~i~~-S~DgG 108 (327)
T 2xbg_A 36 ATILDMSFIDR-HHGWLV-GVNATLME-TR-DGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVGEPPIMLH-TTDGG 108 (327)
T ss_dssp SCEEEEEESSS-SCEEEE-ETTTEEEE-ES-STTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEEETTEEEE-ESSTT
T ss_pred CcEEEEEECCC-CcEEEE-cCCCeEEE-eC-CCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEECCCeEEE-ECCCC
Confidence 46899998876 666664 55676533 32 3443322221 1245688999986 44 444555665544 34444
Q ss_pred cEEEEeecC----CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCc-EEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 373 QVIRTFSTG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKE-ITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 373 ~~i~~~~~~----~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~-~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+.-...... .....+.+... +.++ +++.++.|..- ...++ -..........+..+.+.+++.+++++ ..
T Consensus 109 ~tW~~~~~~~~~~~~~~~i~~~~~---~~~~-~~~~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g-~~ 182 (327)
T 2xbg_A 109 QSWSQIPLDPKLPGSPRLIKALGN---GSAE-MITNVGAIYRT-KDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVS-SR 182 (327)
T ss_dssp SSCEECCCCTTCSSCEEEEEEEET---TEEE-EEETTCCEEEE-SSTTSSEEEEECSCCCCEEEEEECTTSCEEEEE-TT
T ss_pred CCceECccccCCCCCeEEEEEECC---CCEE-EEeCCccEEEE-cCCCCCCEEeecCCCcceEEEEEcCCCcEEEEE-CC
Confidence 433332211 22333333332 2344 44456654332 22232 222233455678999999988777655 44
Q ss_pred CCEEE-EEC--CCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEE
Q 007855 448 KSLRV-WEF--GIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 448 g~I~i-wd~--~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
|.|.. +|- .+-..+ ..+....+..+.+.+++.++ +.+.+|.+++.+...+........ ........+..+.+
T Consensus 183 G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~-~~~~~~~~~~~v~~ 257 (327)
T 2xbg_A 183 GSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLS-PLRRNSVGFLDLAY 257 (327)
T ss_dssp SSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBC-TTSSCCSCEEEEEE
T ss_pred CcEEEEeCCCCCceeEC---CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccC-CcccCCcceEEEEe
Confidence 55544 332 222222 23455678889999988755 455678877764332333322211 00011124667889
Q ss_pred cCCCCEEEEEcCCCcEEEEeCCCCeeEEEEec---CCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 525 SPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKC---HEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~---h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
.+++.+++++. +|.| ++....|+.-..+.. +...+.++.|.+ + ..+++++.+|.|.-++
T Consensus 258 ~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~-~-~~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 258 RTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFS-P-DQGFILGQKGILLRYV 319 (327)
T ss_dssp SSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEE-T-TEEEEECSTTEEEEEC
T ss_pred cCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEEC-C-CceEEEcCCceEEEEc
Confidence 98888777665 6666 455556665555542 234577888874 3 4688888899887654
No 270
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.39 E-value=0.00016 Score=76.02 Aligned_cols=241 Identities=11% Similarity=0.138 Sum_probs=137.2
Q ss_pred CeEEEEEcc-CCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC-C----eEEEEECCC
Q 007855 298 GVSAIRFFP-KYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD-K----NIKYWDTET 371 (587)
Q Consensus 298 ~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D-g----~I~vWd~~t 371 (587)
....|+++| +.+. |+.+...+.|+.+|+ ..+.. ..+.........|+|+++|++|+.+... + .+.+.+. .
T Consensus 138 ~P~~lavdp~~~g~-Lyv~d~~~~I~~id~-~~~~v-~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 138 GAVWLSFDPKNHNH-LYLVGEQHPTRLIDF-EKEYV-STVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp CCCEEEEETTEEEE-EEEEEBTEEEEEEET-TTTEE-EEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCEEEECCCCCCe-EEEEeCCCcEEEEEC-CCCEE-EEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-C
Confidence 457889998 4344 555444488999998 44443 3444455668899999999977666542 1 2333443 2
Q ss_pred CcEE--EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-CCCCeeEEEEecCCCEEEEE-ECC
Q 007855 372 GQVI--RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-HLGAVNTITFVDNNRRFVTS-SDD 447 (587)
Q Consensus 372 ~~~i--~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-h~~~I~~i~~sp~~~~l~s~-s~D 447 (587)
+... ..+.....+..+++.+. .+.++++-..++.|..++...+........ .....+.|+|+|++++|+.+ ...
T Consensus 214 g~~~~~~~l~~~~~p~giavdp~--~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~ 291 (430)
T 3tc9_A 214 SGFKVITELTKGQNCNGAETHPI--NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQ 291 (430)
T ss_dssp GTSCSEEEEEECSSCCCEEECTT--TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTT
T ss_pred CceeeeeeeccCCCceEEEEeCC--CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCC
Confidence 3211 23333344556667663 335677777788999999987765332222 22457889999999955554 566
Q ss_pred CCEEEEECCC--CeE--EEEeecC--------------CCccee-EEEEe--------CCCCEEEEEECCCeEEEEEcCC
Q 007855 448 KSLRVWEFGI--PVV--IKYISEP--------------HMHSMP-SISLH--------PNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 448 g~I~iwd~~~--~~~--~~~~~~~--------------~~~~i~-~i~~s--------p~g~~l~~~s~dg~I~iwd~~~ 500 (587)
+.|..++... ... +..+... ...... .+++. +++.++++-...+.|+.++..
T Consensus 292 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~~- 370 (430)
T 3tc9_A 292 HYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTPQ- 370 (430)
T ss_dssp TEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECTT-
T ss_pred CEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECCC-
Confidence 7899987653 211 1111100 011122 45553 345555555667888888843
Q ss_pred ceeecccce----ecccc--------cccceEEEEEcCC-CCEEEEEcCCCcEEEEeC
Q 007855 501 RFQLNKKKR----FAGHI--------VAGYACQVNFSPD-GRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 501 ~~~~~~~~~----~~~~~--------~~~~i~~l~~spd-g~~L~sgs~dG~I~vwd~ 545 (587)
+........ ..+.. .-.....|+++|+ +.++++-..+.+|+.+++
T Consensus 371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 322111100 01100 0113567899984 655566566777887765
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.36 E-value=0.0014 Score=68.19 Aligned_cols=244 Identities=6% Similarity=-0.079 Sum_probs=149.6
Q ss_pred EEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-eCCCeEEEEECCCC----cEEEEee-cCCcc
Q 007855 311 LILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTETG----QVIRTFS-TGKIP 384 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg~I~vWd~~t~----~~i~~~~-~~~~~ 384 (587)
+|+.+. ...|+..++ ....... +......+..|+|++.+..|+.+ ...+.|..+++... .....+. ....+
T Consensus 85 ~ll~~~-~~~I~~i~l-~~~~~~~-~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTL-DRSEYTS-LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEEE-TTEEEEECT-TSCSCEE-EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEec-cceeEEEcc-CCcceeE-eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 444444 367888888 3333333 33445678899999865555544 45688999998752 2222222 22345
Q ss_pred eEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC--CCCEEEEECCCCeEEE
Q 007855 385 YVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIK 462 (587)
Q Consensus 385 ~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~--Dg~I~iwd~~~~~~~~ 462 (587)
..+++.+. .++++++-...+.|.+.++........+.........|++.|.+..|+.+.. .+.|...++.......
T Consensus 162 ~glavD~~--~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~ 239 (400)
T 3p5b_L 162 DGLAVDWI--HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS 239 (400)
T ss_dssp EEEEEETT--TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE
T ss_pred ccEEEEec--CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE
Confidence 56666653 3367777777889999999876655555555567899999997666666553 3688888887544333
Q ss_pred EeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEE
Q 007855 463 YISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCW 541 (587)
Q Consensus 463 ~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~ 541 (587)
.+. ........|++++.+..|+.+. ..+.|..+++......... .....-.....+++. .+.++++-...+.|.
T Consensus 240 ~~~-~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~ 314 (400)
T 3p5b_L 240 LVT-ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL---EDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 314 (400)
T ss_dssp EEC-SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEE---ECSSTTSSEEEEEEE-TTEEEEEESSSCSEE
T ss_pred EEE-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEE---eCCCCCCCCEEEEEe-CCEEEEecCCCCeEE
Confidence 332 2345678999998777776664 4678999998654322111 111011223346663 344555666778899
Q ss_pred EEeCCCCeeEEEEecCCCCEEEE
Q 007855 542 FWDWKSCKVFRTLKCHEGVCIGC 564 (587)
Q Consensus 542 vwd~~t~~~~~~l~~h~~~V~~v 564 (587)
.+|..+|+.+..+........++
T Consensus 315 ~~~~~~G~~~~~i~~~~~~p~~i 337 (400)
T 3p5b_L 315 SANRLTGSDVNLLAENLLSPEDM 337 (400)
T ss_dssp EEESSSCCCCEEEECSCSCEEEE
T ss_pred EEEcCCCCceEEEecCCCCCceE
Confidence 99987887766665433334444
No 272
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.35 E-value=0.0023 Score=64.10 Aligned_cols=228 Identities=6% Similarity=-0.075 Sum_probs=139.8
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCC----CcEEEEeec-CCcceEEEEccC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNPD 392 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t----~~~i~~~~~-~~~~~~~~~~~~ 392 (587)
..|+..++ ........+. ....+..++|++.+..|+ +-...+.|..+++.+ ......+.. -..+..+++.+.
T Consensus 10 ~~I~~i~~-~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~ 87 (316)
T 1ijq_A 10 HEVRKMTL-DRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI 87 (316)
T ss_dssp SSEEEEET-TSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETT
T ss_pred CeEEEEEC-CCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeec
Confidence 46888888 4444444443 345678999998655554 445568999999876 222222222 234556676653
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC--CCEEEEECCCCeEEEEeecCCCc
Q 007855 393 DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD--KSLRVWEFGIPVVIKYISEPHMH 470 (587)
Q Consensus 393 ~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D--g~I~iwd~~~~~~~~~~~~~~~~ 470 (587)
. ++++++-...+.|.++++........+.........|++.|.+..|+.+... +.|..+++...... .+......
T Consensus 88 ~--~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~-~~~~~~~~ 164 (316)
T 1ijq_A 88 H--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-SLVTENIQ 164 (316)
T ss_dssp T--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-EEECSSCS
T ss_pred C--CeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE-EEEECCCC
Confidence 3 3566776778899999987654443344445678999999876666655543 67888887654332 22222345
Q ss_pred ceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCe
Q 007855 471 SMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCK 549 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~ 549 (587)
....+++++++..|+.+. ..+.|..+++...... .+...... ......+++. .+.++++-...+.|..++..+++
T Consensus 165 ~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~-~~~~~~~~--~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 165 WPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKR--LAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEEECTTT--TSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred CceEEEEeccCCEEEEEECCCCeEEEEecCCCceE-EEeecCCc--cCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence 677999999877666654 5578999998653221 11111001 1223456664 35556666678889999987776
Q ss_pred eEEEEe
Q 007855 550 VFRTLK 555 (587)
Q Consensus 550 ~~~~l~ 555 (587)
.+..+.
T Consensus 241 ~~~~i~ 246 (316)
T 1ijq_A 241 DVNLLA 246 (316)
T ss_dssp CCEEEE
T ss_pred ceEEEe
Confidence 655554
No 273
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.31 E-value=0.00018 Score=75.73 Aligned_cols=239 Identities=9% Similarity=-0.023 Sum_probs=142.1
Q ss_pred ceeeEEEecC--CCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCC---C-cEEEEeCCC
Q 007855 342 AVRDISFCND--GTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSD---K-KIVQWDMNT 415 (587)
Q Consensus 342 ~V~~l~fs~d--g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d---g-~I~iwD~~t 415 (587)
....|+|+++ +..|+.+...+.|+.+|+.++...........+..+++.+++ +++++.... . .+..++...
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG---~lyVad~~~~~~~~gv~~~~~~~ 216 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNG---DMVVVDDQSSDTNTGIYLFTRAS 216 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTC---CEEEEECCSCTTSEEEEEECGGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCC---CEEEEcCCCCcccceEEEEECCC
Confidence 4578999984 445555554489999999888877666555567778887754 344444321 1 233333322
Q ss_pred CcE-EEEEccCCCCeeEEEEec-CCCEEEEEECCCCEEEEECCCCeEEEE-eecCCCcceeEEEEeCCCCEEEEE-ECCC
Q 007855 416 KEI-TQEYDQHLGAVNTITFVD-NNRRFVTSSDDKSLRVWEFGIPVVIKY-ISEPHMHSMPSISLHPNTNWLAAQ-SLDN 491 (587)
Q Consensus 416 ~~~-~~~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~i~~i~~sp~g~~l~~~-s~dg 491 (587)
+.. ...+. .......+++.| ++.++++-..++.|+.++..++..... +..........++++|++++|+++ ...+
T Consensus 217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~ 295 (433)
T 4hw6_A 217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKH 295 (433)
T ss_dssp TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTT
T ss_pred Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCC
Confidence 211 01111 234567788998 676666666778899999886655222 222222223469999999955555 4568
Q ss_pred eEEEEEcCCc-eeecccceeccc------c-------cccceEEEEE---------cCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 492 QILIYSTRER-FQLNKKKRFAGH------I-------VAGYACQVNF---------SPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 492 ~I~iwd~~~~-~~~~~~~~~~~~------~-------~~~~i~~l~~---------spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
.|+.++.... ..+.....+.+. . .-.....+++ .++|.++++-..+++|+.++. ++
T Consensus 296 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G 374 (433)
T 4hw6_A 296 CIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG 374 (433)
T ss_dssp EEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS
T ss_pred EEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC
Confidence 8999886521 111000111110 0 0122456888 778887777778889999984 66
Q ss_pred eeEEEEecC------------------CCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 549 KVFRTLKCH------------------EGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 549 ~~~~~l~~h------------------~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
... ++-+. -....+|++.|.++.++++-...++|+.+
T Consensus 375 ~v~-t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i 429 (433)
T 4hw6_A 375 RVT-TYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI 429 (433)
T ss_dssp EEE-EEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred CEE-EEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence 443 33221 12367899995466666666666777764
No 274
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=98.30 E-value=0.0016 Score=64.42 Aligned_cols=253 Identities=11% Similarity=0.121 Sum_probs=160.3
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 397 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 397 (587)
...|.|-|+.+.....+.-..-.. .-.+|..+.|+.-. ..++.|+|+++.+.++.+.........+|.. . +
T Consensus 48 ~~~VvIiDl~n~~~~~Rrpi~Ads----AIMnP~~~ViALra-g~~LQiFnletK~klks~~~~e~VvfWkWis--~--~ 118 (365)
T 2xzh_A 48 QAQVVIIDMNDPSNPIRRPISADS----AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--L--N 118 (365)
T ss_dssp EEEEEEEETTSTTSCEEEECCCSE----EEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSSCEEEEEECS--S--S
T ss_pred CCEEEEEECCCCCCccccccccce----eeeCCCccEEEEec-CCeEEEechHHhhhhcceecCCccEEEEecC--C--C
Confidence 347888999665555554443333 33578777776655 6899999999999999998877655555544 3 2
Q ss_pred EEEEEeCCCcEEEEeCCC-CcEEEEEccCC----CCeeEEEEecCCCEEEEEEC-------CCCEEEEECCCCeEEEEee
Q 007855 398 ILLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDNNRRFVTSSD-------DKSLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~----~~I~~i~~sp~~~~l~s~s~-------Dg~I~iwd~~~~~~~~~~~ 465 (587)
.|...+ +..|+-|++.. ..++..+..|. ..|..-..+++.++++..+- .|.+.+|..+..... ..
T Consensus 119 ~L~lVT-~taVyHWs~~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~i 195 (365)
T 2xzh_A 119 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PI 195 (365)
T ss_dssp EEEEEE-SSEEEEEESSTTCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEE--EE
T ss_pred eEEEEc-CCcEEEEcccCCCCCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccccc--ee
Confidence 333333 46899999974 45666666553 45677777888888776543 367889988766432 22
Q ss_pred cCCCcceeEEEEeCC---CCEEEEEEC---CCeEEEEEcCCc---eeecccc----eecccccccceEEEEEcCCCCEEE
Q 007855 466 EPHMHSMPSISLHPN---TNWLAAQSL---DNQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~---g~~l~~~s~---dg~I~iwd~~~~---~~~~~~~----~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
++|......+.+..+ .++|+.+.. .+.++|.++... .....++ .+..........++..|+.-..++
T Consensus 196 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviy 275 (365)
T 2xzh_A 196 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 275 (365)
T ss_dssp CCSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEE
Confidence 345443333322211 123333332 258899887432 1111111 122222244556688899888999
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 533 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 533 sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
.-+.-|.|++||+.++.++..-+-....|...+-+. ...=++.....|.|
T Consensus 276 viTK~G~ihlyDleTgt~i~~nrIS~d~iF~ta~~~-~~~Gi~~Vnr~GqV 325 (365)
T 2xzh_A 276 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 325 (365)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEEG-GGTEEEEEETTCEE
T ss_pred EEeCCcEEEEEEcccCcEEEEeccCCCceEEecccC-CCCcEEEEcCCCEE
Confidence 999999999999999999988877777776555544 33345555566655
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.27 E-value=0.00052 Score=69.96 Aligned_cols=230 Identities=10% Similarity=-0.023 Sum_probs=139.1
Q ss_pred eeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEc
Q 007855 344 RDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYD 423 (587)
Q Consensus 344 ~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~ 423 (587)
+|.+..++ .+|+.+ ....|+..++........+.....+..+.+.+. .+.++++-...+.|..+++........+.
T Consensus 37 ~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~ 112 (349)
T 3v64_C 37 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVS 112 (349)
T ss_dssp CEEESSSC-CEEEEE-CBSCEEEECTTSCCEEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEEC
T ss_pred cccccccC-ceeEee-cccceEEEeCCCCeeEEeecCCCceEEEEEecc--ccEEEEEeccCCceEEEecCCCCceEEEe
Confidence 34444443 234333 335688888877666555555555666677653 34667776778899999998776544444
Q ss_pred cCCCCeeEEEEecCCCEE-EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CC-CeEEEEEcCC
Q 007855 424 QHLGAVNTITFVDNNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LD-NQILIYSTRE 500 (587)
Q Consensus 424 ~h~~~I~~i~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~d-g~I~iwd~~~ 500 (587)
........+++.+.+..| ++-...+.|.+.++........+ .........++++|.+..|+... .. +.|..+++..
T Consensus 113 ~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG 191 (349)
T 3v64_C 113 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG 191 (349)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE-CTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEE-eCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence 444567889999755554 55555678999998765433333 23345678999999666555544 44 7888888765
Q ss_pred ceeecccceecccccccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 501 RFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg-s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
....... ... -.....++++|++..|+.+ ...+.|..+++........+...-....++++. ++.++++-..
T Consensus 192 ~~~~~~~---~~~--~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~ 264 (349)
T 3v64_C 192 SGRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWH 264 (349)
T ss_dssp CSCEESC---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETT
T ss_pred CCcEEEE---ECC--CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE--CCEEEEecCC
Confidence 3222111 111 2345679999877666555 456789999986543333333334456777773 4444444444
Q ss_pred CCcEEE
Q 007855 580 DGLIKY 585 (587)
Q Consensus 580 DG~I~i 585 (587)
.+.|..
T Consensus 265 ~~~V~~ 270 (349)
T 3v64_C 265 TKSINS 270 (349)
T ss_dssp TTEEEE
T ss_pred CCeEEE
Confidence 555544
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.25 E-value=0.0011 Score=66.40 Aligned_cols=221 Identities=7% Similarity=-0.065 Sum_probs=134.2
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC----CcEEEEEccCCCCee
Q 007855 355 FLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT----KEITQEYDQHLGAVN 430 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t----~~~~~~~~~h~~~I~ 430 (587)
|+.+. ...|+..|+.+.+....+.....+..+.+.+. .+.++++-...+.|..+++.. ......+........
T Consensus 4 ll~~~-~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~--~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 80 (316)
T 1ijq_A 4 LFFTN-RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 80 (316)
T ss_dssp EEEEC-BSSEEEEETTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred EEEEC-CCeEEEEECCCcceEehhcCCCceEEEEEEeC--CCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence 44433 35689999998876666665566667777664 336777777789999999876 222223333335668
Q ss_pred EEEEecCCCEE-EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC--CeEEEEEcCCceeeccc
Q 007855 431 TITFVDNNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKK 507 (587)
Q Consensus 431 ~i~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d--g~I~iwd~~~~~~~~~~ 507 (587)
.|++.+.+..| ++-...+.|.++++........+. ........++++|.+..|+..... +.|..+++....... +
T Consensus 81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~-~ 158 (316)
T 1ijq_A 81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS-L 158 (316)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE-E
T ss_pred EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE-E
Confidence 89998655444 555667889999987654433332 234567899999977666655543 688888876432211 1
Q ss_pred ceecccccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 508 KRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 508 ~~~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
.... -.....+++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|.
T Consensus 159 --~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~~~ly~~d~~~~~V~ 232 (316)
T 1ijq_A 159 --VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIF 232 (316)
T ss_dssp --ECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEE
T ss_pred --EECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE--CCEEEEEECCCCeEE
Confidence 1111 23456799998777665554 567899999874332222222 22345677774 344555554556665
Q ss_pred Ec
Q 007855 585 YW 586 (587)
Q Consensus 585 iW 586 (587)
.+
T Consensus 233 ~~ 234 (316)
T 1ijq_A 233 SA 234 (316)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 277
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.24 E-value=0.0006 Score=71.75 Aligned_cols=242 Identities=10% Similarity=0.095 Sum_probs=137.0
Q ss_pred CeEEEEEccC--CCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC----Ce-EEEEECC
Q 007855 298 GVSAIRFFPK--YGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD----KN-IKYWDTE 370 (587)
Q Consensus 298 ~V~~l~~sp~--~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D----g~-I~vWd~~ 370 (587)
....|+|+|+ .+.+++ +...+.|+.++. ..+... .+.........|+|+++|+ |+.+... .. +...+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv-~D~~~~I~~id~-~~g~v~-~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYW-VGQRDAFRHVDF-VNQYVD-IKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEE-ECBTSCEEEEET-TTTEEE-EECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEE-EeCCCCEEEEEC-CCCEEE-EeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 4678999983 355444 444488999998 455544 4444556689999999999 4444432 12 3333322
Q ss_pred CCcE-EEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEE-c-cCCCCeeEEEEecCCCEEEEE-EC
Q 007855 371 TGQV-IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEY-D-QHLGAVNTITFVDNNRRFVTS-SD 446 (587)
Q Consensus 371 t~~~-i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~-~-~h~~~I~~i~~sp~~~~l~s~-s~ 446 (587)
.+.. ...+.....+..+++.+. .++++++-..++.|+.+|..++.....+ . +....-..|+|+|++++|+.+ ..
T Consensus 216 ~~~~~~~~~~~~~~P~giavd~~--~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~ 293 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVHPQ--NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNG 293 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEECTT--TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETT
T ss_pred CCeeccccccccCCCCEEEEeCC--CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCC
Confidence 2211 112222334445566552 3356666667789999999877663222 2 122233579999999955555 45
Q ss_pred CCCEEEEECCC--Ce-----EEEEe-ec----------CCCcceeEEEE---------eCCCCEEEEEECCCeEEEEEcC
Q 007855 447 DKSLRVWEFGI--PV-----VIKYI-SE----------PHMHSMPSISL---------HPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 447 Dg~I~iwd~~~--~~-----~~~~~-~~----------~~~~~i~~i~~---------sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
.+.|+.+++.. .. .+.-. .. ........+++ .+++.++++-...+.|+.++..
T Consensus 294 ~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~~ 373 (433)
T 4hw6_A 294 KHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTPE 373 (433)
T ss_dssp TTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECTT
T ss_pred CCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECCC
Confidence 67899988652 21 11110 00 01223566888 6777777776777899999853
Q ss_pred Cceeeccccee----ccc--------ccccceEEEEEc-CCCCEEEEEcCCCcEEEEeCC
Q 007855 500 ERFQLNKKKRF----AGH--------IVAGYACQVNFS-PDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 500 ~~~~~~~~~~~----~~~--------~~~~~i~~l~~s-pdg~~L~sgs~dG~I~vwd~~ 546 (587)
+........- .+. ..-.....|+++ ++|.++++=..+++|+.++++
T Consensus 374 -G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 -GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 3221111000 000 001234568888 566666666667778777653
No 278
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.21 E-value=0.0004 Score=69.84 Aligned_cols=229 Identities=8% Similarity=-0.022 Sum_probs=139.1
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCC-CeEEEEeCCCeEEEEECCCCcEE-EEe-ecCCcceEEEEccCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDG-TKFLTASYDKNIKYWDTETGQVI-RTF-STGKIPYVVKLNPDDD 394 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg-~~l~s~s~Dg~I~vWd~~t~~~i-~~~-~~~~~~~~~~~~~~~~ 394 (587)
...|+..++.........+......+..|+|.+.+ .++++-...+.|..+++..+... ..+ ..-..+..+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~-- 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL-- 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT--
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC--
Confidence 46788999843321222222223456789999854 44455556788999998776321 111 12234555666653
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC--CCCEEEEECCCCeEEEEeecCCCcce
Q 007855 395 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
.++++++-...+.|.++++........+.........|++.|.+..|+.+.. .+.|...++........+ .......
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~-~~~l~~P 168 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 168 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSCE
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEE-ECCCCCc
Confidence 3466777777789999998765443334455567899999987666666653 577888887644322222 2234456
Q ss_pred eEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007855 473 PSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
..+++++++..|+.+ +..+.|..+++......... .+. ......+++.. +.++++-...+.|..++..+++..
T Consensus 169 nglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~---~~~--~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~~ 242 (318)
T 3sov_A 169 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGS--LPHPFALTLFE-DILYWTDWSTHSILACNKYTGEGL 242 (318)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---CSC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred cEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEe---cCC--CCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCce
Confidence 889999976666555 45688999998653221111 111 12234466643 345556667788999998777765
Q ss_pred EEEe
Q 007855 552 RTLK 555 (587)
Q Consensus 552 ~~l~ 555 (587)
..+.
T Consensus 243 ~~i~ 246 (318)
T 3sov_A 243 REIH 246 (318)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 5554
No 279
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=98.21 E-value=0.008 Score=61.83 Aligned_cols=253 Identities=11% Similarity=0.121 Sum_probs=164.0
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 397 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 397 (587)
...|.|-|+.+.....+.-..-. +.-.+|..+.|+.-. ..++.|+|+++.+.+..+.....+...+|....
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~VvfWkWis~~---- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWISLN---- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSCCCEEEEEETT----
T ss_pred CCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCCceEEEecCCC----
Confidence 44788899865555544433322 344677777666654 689999999999999999988877666666543
Q ss_pred EEEEEeCCCcEEEEeCCC-CcEEEEEccCC----CCeeEEEEecCCCEEEEEEC-------CCCEEEEECCCCeEEEEee
Q 007855 398 ILLAGMSDKKIVQWDMNT-KEITQEYDQHL----GAVNTITFVDNNRRFVTSSD-------DKSLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t-~~~~~~~~~h~----~~I~~i~~sp~~~~l~s~s~-------Dg~I~iwd~~~~~~~~~~~ 465 (587)
.|... .+..|+-|++.. ..++..+..|. ..|..-..+++.++++..+- .|.+.+|..+..... ..
T Consensus 118 ~l~lV-T~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ--~i 194 (494)
T 1bpo_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQ--PI 194 (494)
T ss_dssp EEEEE-CSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEE--EE
T ss_pred eEEEE-cCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccc--hh
Confidence 23333 457899999974 35666666653 45777777888998776542 367889988765432 22
Q ss_pred cCCCcceeEEEEeCCC---CEEEEEECC---CeEEEEEcCCc---eeecccc----eecccccccceEEEEEcCCCCEEE
Q 007855 466 EPHMHSMPSISLHPNT---NWLAAQSLD---NQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 466 ~~~~~~i~~i~~sp~g---~~l~~~s~d---g~I~iwd~~~~---~~~~~~~----~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
++|......+.+..+. +.|+.+... +.++|.++... .....++ .+..........++..|+.-..++
T Consensus 195 eGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviy 274 (494)
T 1bpo_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (494)
T ss_dssp CCSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEE
T ss_pred eeeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEE
Confidence 3454444333332211 244444432 78999988532 1111111 122222234555688999999999
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 533 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 533 sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
..+.-|.|++||+.++.++..-+-....|...+-+. ...=++.....|.|
T Consensus 275 viTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~-~~~Gi~~Vnr~GqV 324 (494)
T 1bpo_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHE-ATAGIIGVNRKGQV 324 (494)
T ss_dssp EEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET-TTTEEEEEETTCEE
T ss_pred EEecCceEEEEecccceeeeeecccCCceEEecccC-CCCcEEEEccCceE
Confidence 999999999999999999988877777776655555 33345555566655
No 280
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.16 E-value=0.00083 Score=65.03 Aligned_cols=205 Identities=10% Similarity=0.137 Sum_probs=127.5
Q ss_pred EEcccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEE
Q 007855 335 TYMGHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQW 411 (587)
Q Consensus 335 ~~~~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw 411 (587)
.+.+-...+..|+|+|++..|+ +...++.|...|+. ++.+..+... .....+++... +.++++.-.++.+.++
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~---g~~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGD---NQFVISDERDYAIYVI 96 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECST---TEEEEEETTTTEEEEE
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCC---CEEEEEECCCCcEEEE
Confidence 4556667899999999766555 56678899999998 8888888654 33445555432 2455665567889998
Q ss_pred eCCCCcE---EEEEc------cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC---CeEEEEee------cCCCccee
Q 007855 412 DMNTKEI---TQEYD------QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI---PVVIKYIS------EPHMHSMP 473 (587)
Q Consensus 412 D~~t~~~---~~~~~------~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~---~~~~~~~~------~~~~~~i~ 473 (587)
++..... +.... ........|+|.|.+..|+++.......||.+.. ...+..+. ......+.
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCce
Confidence 8765432 22221 1234568999999998888887766666666541 11111111 12344678
Q ss_pred EEEEeCCCC-EEEEEECCCeEEEEEcCCceeecccceecccc----cccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 474 SISLHPNTN-WLAAQSLDNQILIYSTRERFQLNKKKRFAGHI----VAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 474 ~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
+++++|... +++.......|.++|.... .+.......+.. .-...-.|+|.++|++.++ +.-..++.|.-
T Consensus 177 ~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 177 GAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEEC
T ss_pred eEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEEe
Confidence 999999654 5555556678888987654 322222221210 0123456999999985555 55556666643
No 281
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.14 E-value=0.00069 Score=70.10 Aligned_cols=230 Identities=10% Similarity=-0.028 Sum_probs=140.5
Q ss_pred eEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc
Q 007855 345 DISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ 424 (587)
Q Consensus 345 ~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~ 424 (587)
|.+..+ ..+|+.+ ....|+.+++..............+..+.+.+. .+.++++-...+.|..+++........+..
T Consensus 81 C~~~~~-~~~l~~~-~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~--~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 156 (386)
T 3v65_B 81 CKALGP-EPVLLFA-NRIDIRQVLPHRSEYTLLLNNLENAIALDFHHR--RELVFWSDVTLDRILRANLNGSNVEEVVST 156 (386)
T ss_dssp EEECSS-CCEEEEE-CBSCEEEECTTSCCCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCCEEEEECS
T ss_pred ECCccc-cceeEee-cCccceeeccCCCcEEEEecCCCccEEEEEecC--CCeEEEEeCCCCcEEEEecCCCCcEEEEeC
Confidence 444434 2334433 346788889887766555555555666777653 346777777788999999987765554544
Q ss_pred CCCCeeEEEEecCCCEE-EEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC-C-CeEEEEEcCCc
Q 007855 425 HLGAVNTITFVDNNRRF-VTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRER 501 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l-~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~-d-g~I~iwd~~~~ 501 (587)
.......|++.+.+..| ++-...+.|.+.++........+ .........++++|.+..|+.... . +.|..+++...
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~-~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~ 235 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLL-WQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS 235 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEE-CSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEee-cCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence 44566789998755554 44455678888888655433333 234456789999997766655543 3 67888887653
Q ss_pred eeecccceecccccccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECC
Q 007855 502 FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 502 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sg-s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~D 580 (587)
...... ... -.....|+|+|++..|+.+ ...+.|..+++........+........++++. ++.++++-...
T Consensus 236 ~~~~~~---~~~--~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~--~~~ly~td~~~ 308 (386)
T 3v65_B 236 GRRIIA---DTH--LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF--EDSLYWTDWHT 308 (386)
T ss_dssp SCEEEE---CSS--CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE--TTEEEEEETTT
T ss_pred CcEEEE---ECC--CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE--CCEEEEeeCCC
Confidence 221111 111 1235579999876666554 456789999986544333343334456777773 44455555455
Q ss_pred CcEEEc
Q 007855 581 GLIKYW 586 (587)
Q Consensus 581 G~I~iW 586 (587)
+.|..+
T Consensus 309 ~~V~~~ 314 (386)
T 3v65_B 309 KSINSA 314 (386)
T ss_dssp TEEEEE
T ss_pred CeEEEE
Confidence 556543
No 282
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=98.13 E-value=0.0013 Score=69.81 Aligned_cols=250 Identities=8% Similarity=0.055 Sum_probs=143.7
Q ss_pred CeEEEEEcc-CCCcEEEEEeCCCeEEEEecCCCCeeeEEEcc---cCCceeeEEE-------ecCCCeEEEEeCCC----
Q 007855 298 GVSAIRFFP-KYGHLILSAGMDTKVKIWDVFNSGKCMRTYMG---HSKAVRDISF-------CNDGTKFLTASYDK---- 362 (587)
Q Consensus 298 ~V~~l~~sp-~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~---h~~~V~~l~f-------s~dg~~l~s~s~Dg---- 362 (587)
....|+|.| +.++++++....+.|++.|+ ..+.+...... .......|+| +++|.+|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~-~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDL-KNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEET-TTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEEC-CCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 367889998 44566666555577888888 44444443332 1235899999 99999777776654
Q ss_pred ---eEEEEECCC-CcEE-----EEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC-------CCcE--------
Q 007855 363 ---NIKYWDTET-GQVI-----RTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN-------TKEI-------- 418 (587)
Q Consensus 363 ---~I~vWd~~t-~~~i-----~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~-------t~~~-------- 418 (587)
.|.+++... +... ..+.....+..+++.+. .+.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~--~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPI--NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTT--TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEcCC--CCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 266665443 2211 22222234445566653 44677788888999999987 5543
Q ss_pred ---EEE-Ec-cCCCCeeEEEEecCCCEEEEE-ECCCCEEEEECC--CCeEE--EEeec--C------------CCccee-
Q 007855 419 ---TQE-YD-QHLGAVNTITFVDNNRRFVTS-SDDKSLRVWEFG--IPVVI--KYISE--P------------HMHSMP- 473 (587)
Q Consensus 419 ---~~~-~~-~h~~~I~~i~~sp~~~~l~s~-s~Dg~I~iwd~~--~~~~~--~~~~~--~------------~~~~i~- 473 (587)
... +. ........|+|+|++++|+.+ +....|+.+++. ..... ..+.. . ......
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~ 376 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ 376 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence 112 21 223456899999999965555 456778886653 32210 11111 0 011223
Q ss_pred EEEEe-------CCCCEEEEEECCCeEEEEEcCCceeeccccee----------c-ccc--------cccceEEEEEcCC
Q 007855 474 SISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNKKKRF----------A-GHI--------VAGYACQVNFSPD 527 (587)
Q Consensus 474 ~i~~s-------p~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~----------~-~~~--------~~~~i~~l~~spd 527 (587)
.++.. +++.++++-+.++.|+.++.. +. +..+... . +.. .-.....|+++++
T Consensus 377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~~-G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~ 454 (496)
T 3kya_A 377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTPE-GI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV 454 (496)
T ss_dssp EEEEECTTCCSSCCEEEEEEEGGGTEEEEECTT-CB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred EEEEccccccccCCCeEEEEECCCCEEEEEeCC-CC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence 45554 456666666778899999843 32 2111100 0 100 0123456888886
Q ss_pred -CCEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 528 -GRFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 528 -g~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
|.++++=..+.+|+.+++.....+.
T Consensus 455 ~g~lyVaD~~N~rIrki~~~~~~~~~ 480 (496)
T 3kya_A 455 KEMFYVHDQVGHTIRTISMEQEENVA 480 (496)
T ss_dssp TTEEEEEETTTTEEEEEEECCCC---
T ss_pred CCEEEEEeCCCCEEEEEECCCCcccc
Confidence 7666666677888888886654443
No 283
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.11 E-value=0.00021 Score=79.45 Aligned_cols=237 Identities=13% Similarity=0.130 Sum_probs=134.0
Q ss_pred CCCCeEEEEEccCCCcEEEEEeC-CCeEEEEecCCCCeeeEEEcccCC-ceeeEEEecCCCeEEEEe-CC-----CeEEE
Q 007855 295 HTKGVSAIRFFPKYGHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHSK-AVRDISFCNDGTKFLTAS-YD-----KNIKY 366 (587)
Q Consensus 295 H~~~V~~l~~sp~~g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~~-~V~~l~fs~dg~~l~s~s-~D-----g~I~v 366 (587)
+.....++++..+ +.+++.|+. +..+.+||. .+......-..+.. .-.++++.++++.++.|+ .+ ..+.+
T Consensus 241 ~~~~~~~~~~~~~-g~lyv~GG~~~~~v~~yd~-~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 241 HDMFCPGISMDGN-GQIVVTGGNDAKKTSLYDS-SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp CCCSSCEEEECTT-SCEEEECSSSTTCEEEEEG-GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred CCCccccccCCCC-CCEEEeCCCCCCceEEecC-cCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 3444556777777 889998884 568999998 44433222111212 223456667899999988 44 57999
Q ss_pred EECCCCcEEEEeecCCcceEEE--EccCCCCCcEEEEEeCCC---------cEEEEeCCCCcEEEEEccCC---------
Q 007855 367 WDTETGQVIRTFSTGKIPYVVK--LNPDDDKQNILLAGMSDK---------KIVQWDMNTKEITQEYDQHL--------- 426 (587)
Q Consensus 367 Wd~~t~~~i~~~~~~~~~~~~~--~~~~~~~~~~l~sg~~dg---------~I~iwD~~t~~~~~~~~~h~--------- 426 (587)
||..+++....-.....+.... ......+..+++.|+.+| .+..||..+.........+.
T Consensus 319 yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~ 398 (656)
T 1k3i_A 319 YSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDA 398 (656)
T ss_dssp EETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCC
T ss_pred eCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCC
Confidence 9998876544311000000000 000001224556665544 46788888776443332221
Q ss_pred CCeeEEEEec-CCCEEEEEECCC-----------CEEEEECCCCeEEEEe--ecCCCcceeEEEEeCCCCEEEEEECC--
Q 007855 427 GAVNTITFVD-NNRRFVTSSDDK-----------SLRVWEFGIPVVIKYI--SEPHMHSMPSISLHPNTNWLAAQSLD-- 490 (587)
Q Consensus 427 ~~I~~i~~sp-~~~~l~s~s~Dg-----------~I~iwd~~~~~~~~~~--~~~~~~~i~~i~~sp~g~~l~~~s~d-- 490 (587)
..-.++.|.. ++++++.|+.++ .|.+||..+..-.... ..+......++++.|+++++++|+.+
T Consensus 399 ~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~ 478 (656)
T 1k3i_A 399 MCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRG 478 (656)
T ss_dssp BTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBC
T ss_pred CCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccC
Confidence 1234444443 677788877532 5778887776554433 22333334566778899999998754
Q ss_pred ---------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC
Q 007855 491 ---------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 491 ---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
..+.+||..+.. ......... .........+.|+|++++.|+.
T Consensus 479 ~~~~~~~~~~~v~~ydp~t~~-W~~~~~~~~--~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 479 IPFEDSTPVFTPEIYVPEQDT-FYKQNPNSI--VRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp CTTCCCSBCCCCEEEEGGGTE-EEECCCCSS--CCCTTEEEEECTTSCEEEEECC
T ss_pred cCcCCCCcccceEEEcCCCCc-eeecCCCCC--ccccccHhhcCCCcEEEecCCC
Confidence 568999986642 211111111 1122233556799999999985
No 284
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=98.06 E-value=0.0054 Score=69.29 Aligned_cols=245 Identities=6% Similarity=-0.077 Sum_probs=147.3
Q ss_pred eEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCC-eEEEEeCCCeEEEEECCCC----c
Q 007855 299 VSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGT-KFLTASYDKNIKYWDTETG----Q 373 (587)
Q Consensus 299 V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~-~l~s~s~Dg~I~vWd~~t~----~ 373 (587)
-+|.+..+. . +|+.+. ...|+..++ ........+ .....+..|+|.+... ++++-...+.|+.+++... .
T Consensus 387 ~~C~~~~~~-p-~Ll~an-~~~Ir~i~l-~~~~~~~l~-~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~ 461 (791)
T 3m0c_C 387 KACKAVGSI-A-YLFFTN-RHEVRKMTL-DRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 461 (791)
T ss_dssp CCCEETTSC-C-EEEEEC-BSSEEEECT-TSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred ceeeecccc-c-cccccc-ccceeEeec-cCCcceeee-cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc
Confidence 344444332 2 344333 356777787 333333333 3456678999998544 4445555688999998753 2
Q ss_pred EEEEee-cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-C-CCE
Q 007855 374 VIRTFS-TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-D-KSL 450 (587)
Q Consensus 374 ~i~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-D-g~I 450 (587)
....+. .-..+..+++.+.. ++++++-...+.|.+.++........+.........|++.|.+.+|+.+.. . +.|
T Consensus 462 ~~~vi~~~l~~P~GLAvD~~~--~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I 539 (791)
T 3m0c_C 462 YDTVISRDIQAPDGLAVDWIH--SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKI 539 (791)
T ss_dssp CEEEECSSCSCCCEEEEETTT--TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred eeEEEecCCCCcceeeeeecC--CcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeE
Confidence 222232 23455667777643 367777778899999999866554445455667899999998666666653 2 678
Q ss_pred EEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 451 RVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 451 ~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
.+.++........+ .........|++++.+..|+.+. ..+.|..+++......... .....-.....|++.. +.
T Consensus 540 ~~~~~dG~~~~~lv-~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~---~~~~~l~~P~glav~~-~~ 614 (791)
T 3m0c_C 540 KKGGLNGVDIYSLV-TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTIL---EDEKRLAHPFSLAVFE-DK 614 (791)
T ss_dssp EEEETTSCCEEEEE-CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE---ECTTTTSSEEEEEEET-TE
T ss_pred EEEecCCCceEEEE-eCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEe---cCCCccCCCCEEEEeC-CE
Confidence 88888765544333 33445678999998777666664 4578999998654332211 1110011223455532 23
Q ss_pred EEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 530 FVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 530 ~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
++++-...+.|...+..+++.+..+.
T Consensus 615 lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 615 VFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEECCCCEEEEEeCCCCcceEEee
Confidence 44455567788888887876666554
No 285
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.05 E-value=0.00042 Score=78.34 Aligned_cols=197 Identities=11% Similarity=0.107 Sum_probs=108.1
Q ss_pred CCCC-CeEEEEEc-cCCCcEEEEE-eCC----CeEEEEecCCCC-eeeE-EEcccCCceeeEEEecCCCeEEEEeCC---
Q 007855 294 GHTK-GVSAIRFF-PKYGHLILSA-GMD----TKVKIWDVFNSG-KCMR-TYMGHSKAVRDISFCNDGTKFLTASYD--- 361 (587)
Q Consensus 294 gH~~-~V~~l~~s-p~~g~~L~sg-s~D----g~I~iWd~~~~~-~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~D--- 361 (587)
+|.- .+...+|| |+ |++||-+ +.+ .+|+++|+ .++ +.+. .+. .....++|+|||+.|+....+
T Consensus 170 ~~~~~~~~~~~~S~PD-G~~lAy~~~~~G~~~~~l~v~dl-~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~ 244 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPE-HDLVAFSVDMSGNEVYTIEFKRI-SDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETL 244 (751)
T ss_dssp TCSCCEEEEEEECTTT-TCEEEEEEESSSSSCEEEEEEET-TCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTC
T ss_pred CCCeEEEeeeEecCCC-CCEEEEEEeCCCCceEEEEEEEC-CCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCC
Confidence 4443 68899999 99 7766643 333 35999999 555 4221 111 124578999999988877765
Q ss_pred --CeEEEEECCCCc--EEEEeecC--CcceEEEEccCCCCCcEEEEEeC--CCcEEEEeCCCC--cE-EEEE-ccCCCCe
Q 007855 362 --KNIKYWDTETGQ--VIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS--DKKIVQWDMNTK--EI-TQEY-DQHLGAV 429 (587)
Q Consensus 362 --g~I~vWd~~t~~--~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~--dg~I~iwD~~t~--~~-~~~~-~~h~~~I 429 (587)
..|.++++.+++ ....+... .......+++++ ..++++... ...|+++|+.++ .. +..+ .......
T Consensus 245 ~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg--~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~ 322 (751)
T 2xe4_A 245 RENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADT--NTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVR 322 (751)
T ss_dssp CEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTS--SEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCC
T ss_pred CCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCC--CEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCce
Confidence 368888988764 22333322 222344566644 244444432 346888898875 22 1333 3344555
Q ss_pred eEEEEecCCCEEEEEECC--C--CEEEEECCCC-eEEE-EeecCCCcceeEEEEeCCCCEEEEEECCCeE--EEEEc
Q 007855 430 NTITFVDNNRRFVTSSDD--K--SLRVWEFGIP-VVIK-YISEPHMHSMPSISLHPNTNWLAAQSLDNQI--LIYST 498 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s~D--g--~I~iwd~~~~-~~~~-~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I--~iwd~ 498 (587)
.++.|+..+.+++.+..+ + .|.++++..+ .... .+.......+..+.+. .+.++++...++.. .++++
T Consensus 323 ~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl 398 (751)
T 2xe4_A 323 YDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMA 398 (751)
T ss_dssp EEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEEC
T ss_pred EEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEec
Confidence 666655444444444433 2 5777777642 2111 2222122245555554 33445556667754 45554
No 286
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.04 E-value=0.0022 Score=66.56 Aligned_cols=222 Identities=7% Similarity=-0.073 Sum_probs=137.8
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC----cEEEEEccCCCCe
Q 007855 354 KFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAV 429 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~----~~~~~~~~h~~~I 429 (587)
+|+.+ ....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++... .....+.......
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~--~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p 161 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP 161 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEECSCSCEEEEEEETT--TTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred eeEEe-ccceeEEEccCCcceeEeccccCcceEEeeeec--cCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence 44444 347899999988766666655566667777664 3356666667789999998752 2333444455678
Q ss_pred eEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC--CCeEEEEEcCCceeecc
Q 007855 430 NTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNK 506 (587)
Q Consensus 430 ~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~--dg~I~iwd~~~~~~~~~ 506 (587)
..|++.+. ++++++-...+.|.+.++........+. ........|+++|.+.+|+.... .+.|...++........
T Consensus 162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~ 240 (400)
T 3p5b_L 162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL 240 (400)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence 89999974 4445555567789999987665444443 24445789999997766666553 37888888865432211
Q ss_pred cceecccccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEec--CCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 507 KKRFAGHIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKC--HEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 507 ~~~~~~~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~--h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
. ... -.....|++++++..|+.++ ..+.|..+|+........+.. .-....++++. ++.++++-...+.|
T Consensus 241 ~---~~~--l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V 313 (400)
T 3p5b_L 241 V---TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAI 313 (400)
T ss_dssp E---CSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSE
T ss_pred E---ECC--CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeE
Confidence 1 111 13456699998777776654 567899999865443333332 22345667663 44455555555666
Q ss_pred EEc
Q 007855 584 KYW 586 (587)
Q Consensus 584 ~iW 586 (587)
..+
T Consensus 314 ~~~ 316 (400)
T 3p5b_L 314 FSA 316 (400)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
No 287
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.95 E-value=0.016 Score=55.92 Aligned_cols=203 Identities=13% Similarity=0.156 Sum_probs=128.1
Q ss_pred EEEcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEEE
Q 007855 290 HTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYWD 368 (587)
Q Consensus 290 ~tl~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd 368 (587)
+.+.|-.+.+..|+|.|+++.++++...++.|...|. . ++.++.+. +-....-.|++.+++.++++.-.++.+.+++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~-~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~ 97 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTT-N-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVIS 97 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEET-T-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeC-C-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEE
Confidence 3455666789999999985667777888899999998 3 77777763 2224578889998888777766678899998
Q ss_pred CCCCc---EEEEeecC--Ccc-----eEEEEccCCCCCcEEEEEeCCC-cEEEEeC-CCCcEEEEEc-------cCCCCe
Q 007855 369 TETGQ---VIRTFSTG--KIP-----YVVKLNPDDDKQNILLAGMSDK-KIVQWDM-NTKEITQEYD-------QHLGAV 429 (587)
Q Consensus 369 ~~t~~---~i~~~~~~--~~~-----~~~~~~~~~~~~~~l~sg~~dg-~I~iwD~-~t~~~~~~~~-------~h~~~I 429 (587)
+.... .+...... ... ..+++.+.. ..++++.-.+. .|+.|+- .....+..+. .+...+
T Consensus 98 v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~--~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~ 175 (255)
T 3qqz_A 98 LTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQD--HTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDV 175 (255)
T ss_dssp ECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTT--TEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCC
T ss_pred cCCCCeeeeeeeeccccccccccCCcceEEEeCCC--CEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCc
Confidence 76544 22333221 112 467777653 24555444443 4555551 1111122221 134567
Q ss_pred eEEEEecCCCEEEEEE-CCCCEEEEECCCCeEEEEeecCCC--------cceeEEEEeCCCCEEEEEECCCeEEEEEc
Q 007855 430 NTITFVDNNRRFVTSS-DDKSLRVWEFGIPVVIKYISEPHM--------HSMPSISLHPNTNWLAAQSLDNQILIYST 498 (587)
Q Consensus 430 ~~i~~sp~~~~l~s~s-~Dg~I~iwd~~~~~~~~~~~~~~~--------~~i~~i~~sp~g~~l~~~s~dg~I~iwd~ 498 (587)
.+++++|....|++.| ..+.|.++|.... .+..+..... ..--.|++.++|++ ++.+.-+.++.|.-
T Consensus 176 S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~l-yIvsE~n~~y~f~~ 251 (255)
T 3qqz_A 176 SGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNI-YIVSEPNRFYRFTP 251 (255)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCE-EEEETTTEEEEEEC
T ss_pred eeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCE-EEEcCCceEEEEEe
Confidence 8999999766655554 4567888887654 4444433221 24578999999984 44477787777743
No 288
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.94 E-value=0.0055 Score=61.16 Aligned_cols=207 Identities=9% Similarity=0.073 Sum_probs=126.4
Q ss_pred EcCCCCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-------CCceeeEEE---ecCCCeEEEEe--
Q 007855 292 WSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDISF---CNDGTKFLTAS-- 359 (587)
Q Consensus 292 l~gH~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~f---s~dg~~l~s~s-- 359 (587)
+.+..---.+++|++..+.++++.-..++|..|+. ..+......... ...+..|.| .++++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~-~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~ 86 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNP-KTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNA 86 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECT-TTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEET
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcC-CCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccc
Confidence 33444445678999875666666668999999998 333332222222 113678999 58877776543
Q ss_pred -----------CCCeEEEEECC---CCcEEEEeecC------------CcceEEEEccCCCCCcEEEEEeCC-CcEEEEe
Q 007855 360 -----------YDKNIKYWDTE---TGQVIRTFSTG------------KIPYVVKLNPDDDKQNILLAGMSD-KKIVQWD 412 (587)
Q Consensus 360 -----------~Dg~I~vWd~~---t~~~i~~~~~~------------~~~~~~~~~~~~~~~~~l~sg~~d-g~I~iwD 412 (587)
.+..|..+|+. +++.+...... ....+..+..+. .++..++++.. +.|..++
T Consensus 87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~-~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDR-DGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECT-TSCEEEEEEESSCEEEEEC
T ss_pred ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECC-CCCEEEeCCCCCCeEEEEe
Confidence 26789999999 88777665432 112244444443 45778878888 8888888
Q ss_pred CCCCcEEEEE-c----cCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeE--EEEee-c--CCCcceeE-EEEeCCC
Q 007855 413 MNTKEITQEY-D----QHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVV--IKYIS-E--PHMHSMPS-ISLHPNT 481 (587)
Q Consensus 413 ~~t~~~~~~~-~----~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~--~~~~~-~--~~~~~i~~-i~~sp~g 481 (587)
........-+ . ......+.|+++|+++.|++....|.|..+|+..+.. +.... . ........ +..-.+|
T Consensus 166 pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G 245 (334)
T 2p9w_A 166 ADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGN 245 (334)
T ss_dssp TTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETT
T ss_pred CCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCC
Confidence 7654332211 1 1123467999999999999887799999999986544 22110 0 01112333 3334477
Q ss_pred CE-EEEEECCCeEEEEEcCC
Q 007855 482 NW-LAAQSLDNQILIYSTRE 500 (587)
Q Consensus 482 ~~-l~~~s~dg~I~iwd~~~ 500 (587)
+. |++....+.+.+.+...
T Consensus 246 ~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 246 ESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEEEETTEEEEEECSST
T ss_pred EEEEEEcCCCCEEEEECCCC
Confidence 77 44445566666665443
No 289
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.88 E-value=0.0019 Score=64.88 Aligned_cols=216 Identities=9% Similarity=-0.028 Sum_probs=127.0
Q ss_pred CCeEEEEECCCCc--EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-EEEEccCCCCeeEEEEecC
Q 007855 361 DKNIKYWDTETGQ--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 361 Dg~I~vWd~~t~~--~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-~~~~~~h~~~I~~i~~sp~ 437 (587)
...|+.+++.... ....+.....+..+.|.+ ..+.++++-...+.|..+++..+.. ...+.........+++.+.
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~--~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~ 89 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVF--SHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWL 89 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEG--GGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETT
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEe--CCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcC
Confidence 4678999988763 222222222344455555 3346777777788999999876632 1222233456778999875
Q ss_pred CC-EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC--CCeEEEEEcCCceeecccceecccc
Q 007855 438 NR-RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKKRFAGHI 514 (587)
Q Consensus 438 ~~-~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~--dg~I~iwd~~~~~~~~~~~~~~~~~ 514 (587)
+. ++++-...+.|.++++........+ .........++++|.+.+|+.... .+.|..+++........ ....
T Consensus 90 ~g~ly~~d~~~~~I~~~~~dG~~~~~l~-~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~---~~~~- 164 (318)
T 3sov_A 90 GEKLYWTDSETNRIEVSNLDGSLRKVLF-WQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII---INSE- 164 (318)
T ss_dssp TTEEEEEETTTTEEEEEETTSCSCEEEE-CSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE---ECSS-
T ss_pred CCeEEEEECCCCEEEEEECCCCcEEEEE-eCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE---EECC-
Confidence 44 4455556678999998764433222 234456789999997666666653 57888888764322111 1111
Q ss_pred cccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 515 VAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 515 ~~~~i~~l~~spdg~~L~sg-s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
-.....+++++++..|+.+ ...+.|..+|+........+........++++.. +.++++-...+.|..+
T Consensus 165 -l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~--~~lywtd~~~~~V~~~ 234 (318)
T 3sov_A 165 -IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE--DILYWTDWSTHSILAC 234 (318)
T ss_dssp -CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET--TEEEEEETTTTEEEEE
T ss_pred -CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC--CEEEEEecCCCeEEEE
Confidence 1334579999976666555 4567899999864333222332334556777643 3445554444555543
No 290
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.87 E-value=0.044 Score=64.51 Aligned_cols=230 Identities=11% Similarity=0.135 Sum_probs=124.4
Q ss_pred eEEEEcCCC-CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEE-EcccCCceeeEEEecC------CCeEEEEe
Q 007855 288 LVHTWSGHT-KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRT-YMGHSKAVRDISFCND------GTKFLTAS 359 (587)
Q Consensus 288 ~i~tl~gH~-~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~-~~~h~~~V~~l~fs~d------g~~l~s~s 359 (587)
.+..|..-. ..|.+.+.+. .+++.++ .+.|.++++. .+.+... -..-...|.|+++.+. +.+++.|.
T Consensus 504 ~~~~w~~p~~~~I~~As~n~---~~vvva~-g~~l~~fel~-~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~ 578 (1158)
T 3ei3_A 504 LVSEWKEPQAKNISVASCNS---SQVVVAV-GRALYYLQIH-PQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGL 578 (1158)
T ss_dssp EEEEECCTTCCCCCEEEECS---SEEEEEE-TTEEEEEEEE-TTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEE
T ss_pred EEEEEECCCCCEEEEEEeCC---CEEEEEE-CCEEEEEEee-CCceeeecccCCCCceEEEEeecCCCCcccccEEEEEE
Confidence 444555332 3566665542 3455554 5788888873 3432211 1123567999999863 46899999
Q ss_pred C-CCeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeCCCcEEEEeC--CCCcEEEE---EccCCCCeeE
Q 007855 360 Y-DKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDM--NTKEITQE---YDQHLGAVNT 431 (587)
Q Consensus 360 ~-Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~--~t~~~~~~---~~~h~~~I~~ 431 (587)
. |++|+|+++.+.+.+.....+. .+..+.+.... ...+|.+|..||.+..+.+ .++.+... +-+ ..++.-
T Consensus 579 ~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~-~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG-~~pv~L 656 (1158)
T 3ei3_A 579 WTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFE-SSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG-TQPTVL 656 (1158)
T ss_dssp TTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEET-TEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC-SSCCEE
T ss_pred CCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeC-CCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC-CCceEE
Confidence 7 9999999999888776655433 44444443332 3367899999999865544 45554432 222 345544
Q ss_pred EEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEE-EEeCC--CCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 432 ITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSI-SLHPN--TNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 432 i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i-~~sp~--g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
..+...+..-+.+..+....++.-+..-....+ ....+..+ .|+.. ..-++..+ ++.++|..+.....+....
T Consensus 657 ~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l---~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~~~ 732 (1158)
T 3ei3_A 657 RTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNV---NLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHIRT 732 (1158)
T ss_dssp EEEESSSCEEEEEESSSCEEEEESSSSEEEEEB---SSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEEEE
T ss_pred EEEeeCCceeEEEECCCCEEEEEcCCceEEecc---ChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeEEE
Confidence 444444444444444566666654433222222 22233333 34321 23455444 5568888775432221111
Q ss_pred eecccccccceEEEEEcCCCCEEE
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
-.....+..++++|..+.++
T Consensus 733 ----ipL~~Tprri~y~~~~~~~~ 752 (1158)
T 3ei3_A 733 ----VPLYESPRKICYQEVSQCFG 752 (1158)
T ss_dssp ----EECSSEEEEEEEEGGGTEEE
T ss_pred ----EeCCCCceEEEEcCCCCEEE
Confidence 11123455677777665443
No 291
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.84 E-value=0.021 Score=62.79 Aligned_cols=227 Identities=7% Similarity=-0.057 Sum_probs=142.8
Q ss_pred CCCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEE-EEeCCCeEEEEECCCCcEEEEeecC-CcceEEEEccCC
Q 007855 317 MDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFL-TASYDKNIKYWDTETGQVIRTFSTG-KIPYVVKLNPDD 393 (587)
Q Consensus 317 ~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~-s~s~Dg~I~vWd~~t~~~i~~~~~~-~~~~~~~~~~~~ 393 (587)
....|+..++. .......+. ..-..+..|+|++.+..|+ +-..++.|..+++........+..+ ..+..+++.+..
T Consensus 13 ~~~~I~~i~l~-~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~ 91 (628)
T 4a0p_A 13 RRADIRRISLE-TNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLG 91 (628)
T ss_dssp ETTEEEEEESS-CTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTT
T ss_pred eCCcEEEEECC-CCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCC
Confidence 45778888983 333222222 2335678999998655555 5456789999998766544444433 346667776643
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC--CCCEEEEECCCCeEEEEeecCCCcc
Q 007855 394 DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHS 471 (587)
Q Consensus 394 ~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~ 471 (587)
++++++-...+.|.+.++........+.........|++.|....|+.+.. .+.|...++........+ .....
T Consensus 92 --~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~--~~~~~ 167 (628)
T 4a0p_A 92 --KNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV--PNVGR 167 (628)
T ss_dssp --TEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE--CSCSS
T ss_pred --CEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE--CCCCC
Confidence 367777777889999998765433334345567899999986666666553 467777877655433223 24456
Q ss_pred eeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee
Q 007855 472 MPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV 550 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~ 550 (587)
...+++++.+..|+.+. ..+.|..+++...... . +... -.....+++.. +.++++-...+.|...|..+++.
T Consensus 168 P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~-v---~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~ 240 (628)
T 4a0p_A 168 ANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNRE-V---IADD--LPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQN 240 (628)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-E---EEEC--CSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred cceEEEccccCEEEEEECCCCEEEEEcCCCCceE-E---eecc--CCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCc
Confidence 78999999776666654 5678999998664331 1 1111 11233466654 44445555678899999877765
Q ss_pred EEEEe
Q 007855 551 FRTLK 555 (587)
Q Consensus 551 ~~~l~ 555 (587)
...+.
T Consensus 241 ~~~l~ 245 (628)
T 4a0p_A 241 RTIIQ 245 (628)
T ss_dssp CEEEE
T ss_pred eEEEe
Confidence 55444
No 292
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.82 E-value=0.0074 Score=60.75 Aligned_cols=185 Identities=12% Similarity=0.284 Sum_probs=122.9
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecC----CCe--EE-E-EeC--CCeEEEEEC--CCCcEEE
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCND----GTK--FL-T-ASY--DKNIKYWDT--ETGQVIR 376 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~d----g~~--l~-s-~s~--Dg~I~vWd~--~t~~~i~ 376 (587)
..+++.....+-+.+||+ .++.++.+.. +.++.+..-|+ |+. |+ + .-. +++|++|++ .++. +.
T Consensus 40 ~s~ii~t~k~~gL~Vydl--~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~ 114 (355)
T 3amr_A 40 NSKLITTNKKSGLVVYSL--DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQ 114 (355)
T ss_dssp GCEEEEEETTTEEEEEET--TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EE
T ss_pred ccEEEEEcCCCCEEEEcC--CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-ee
Confidence 456666677788999999 7888888754 55677766652 222 23 3 333 578999976 4444 44
Q ss_pred Eee-------cC-CcceEEEEccCCC-CCcEEEEEeCCCcEEEEeCC-------CCcEEEEEccCCCCeeEEEEecCCCE
Q 007855 377 TFS-------TG-KIPYVVKLNPDDD-KQNILLAGMSDKKIVQWDMN-------TKEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 377 ~~~-------~~-~~~~~~~~~~~~~-~~~~l~sg~~dg~I~iwD~~-------t~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
.+. .. ..++-+++..+.. ...++++...+|.+.+|++. +.+.++++.. .+.+-.+...+....
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~ 193 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGR 193 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCe
Confidence 442 11 4555566633332 23468888888999999883 3356777754 467888999998899
Q ss_pred EEEEECCCCEEEEECC-----CCeEEEEeecCCC-cceeEEEEe--CCCC-EEEEEE-CCCeEEEEEcC
Q 007855 441 FVTSSDDKSLRVWEFG-----IPVVIKYISEPHM-HSMPSISLH--PNTN-WLAAQS-LDNQILIYSTR 499 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~-----~~~~~~~~~~~~~-~~i~~i~~s--p~g~-~l~~~s-~dg~I~iwd~~ 499 (587)
|+.+-.+..|..++.+ +...+..+...+. ..+..|++. ++++ ||++++ .++.+.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998776666644 3455555533332 367888884 4555 666666 56799999986
No 293
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=0.005 Score=65.33 Aligned_cols=239 Identities=10% Similarity=-0.001 Sum_probs=135.7
Q ss_pred eeeEEEec-CCCeEEEEe-CCCeEEEEECCCCcEEEEeecCC----cceEEEE-------ccCCCCCcEEEEEeCCC---
Q 007855 343 VRDISFCN-DGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGK----IPYVVKL-------NPDDDKQNILLAGMSDK--- 406 (587)
Q Consensus 343 V~~l~fs~-dg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~~----~~~~~~~-------~~~~~~~~~l~sg~~dg--- 406 (587)
...|+|+| ++..|+.+. ..+.|++.|+.++........+. .+..+++ .+... .++++-..++
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~--~lyvad~~~~~~~ 218 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAE--YMIVAIDYDGKGD 218 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTC--EEEEEECCCTTGG
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCC--EEEEEeCCCCCcc
Confidence 56889998 344455444 44679999998887766555432 3566777 55432 3444444432
Q ss_pred ---cEEEEeCCC-CcEE-----EEEccCCCCeeEEEEecC-CCEEEEEECCCCEEEEECC-------CCeE---------
Q 007855 407 ---KIVQWDMNT-KEIT-----QEYDQHLGAVNTITFVDN-NRRFVTSSDDKSLRVWEFG-------IPVV--------- 460 (587)
Q Consensus 407 ---~I~iwD~~t-~~~~-----~~~~~h~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~-------~~~~--------- 460 (587)
.|.+++... +... +.+.. ......++++|+ +.++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 266776433 2221 22221 234567888995 4555556677789999987 4432
Q ss_pred --EEE-eecCCCcceeEEEEeCCCCEEEEE-ECCCeEEEEEcCCce-eecccceeccc------c-------cccceE-E
Q 007855 461 --IKY-ISEPHMHSMPSISLHPNTNWLAAQ-SLDNQILIYSTRERF-QLNKKKRFAGH------I-------VAGYAC-Q 521 (587)
Q Consensus 461 --~~~-~~~~~~~~i~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~-~~~~~~~~~~~------~-------~~~~i~-~ 521 (587)
... +..+.......|+|+|+|++|+++ +..+.|+.++..... .+.....+.+. . .-.... .
T Consensus 298 g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~g 377 (496)
T 3kya_A 298 NTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQG 377 (496)
T ss_dssp TTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEE
T ss_pred cccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEE
Confidence 112 222334456799999999965554 566889887653311 11000111110 0 001122 2
Q ss_pred EEEc-------CCCCEEEEEcCCCcEEEEeCCCCeeEEEEecC------------------------CCCEEEEEEcCCC
Q 007855 522 VNFS-------PDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCH------------------------EGVCIGCEWHPLE 570 (587)
Q Consensus 522 l~~s-------pdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h------------------------~~~V~~v~~sp~~ 570 (587)
++.. ++|.++++=..+.+|+.++ .+|. +.++-+. -....+|++.+.+
T Consensus 378 v~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~ 455 (496)
T 3kya_A 378 VFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK 455 (496)
T ss_dssp EEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred EEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence 4444 5677777777888999998 5664 4444322 0236789998843
Q ss_pred CCEEEEEECCCcEEEc
Q 007855 571 QSKVATCGWDGLIKYW 586 (587)
Q Consensus 571 ~~~l~s~g~DG~I~iW 586 (587)
+.++++=....+|+.+
T Consensus 456 g~lyVaD~~N~rIrki 471 (496)
T 3kya_A 456 EMFYVHDQVGHTIRTI 471 (496)
T ss_dssp TEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEE
Confidence 5555555566677765
No 294
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.82 E-value=0.014 Score=68.71 Aligned_cols=216 Identities=13% Similarity=0.154 Sum_probs=128.6
Q ss_pred eEEEEECCCCcEEEEeecCCcc--eEEEEcc-CCCCCcEEEEEe----------CCCcEEEEeCCCCcEEEEE-ccCCCC
Q 007855 363 NIKYWDTETGQVIRTFSTGKIP--YVVKLNP-DDDKQNILLAGM----------SDKKIVQWDMNTKEITQEY-DQHLGA 428 (587)
Q Consensus 363 ~I~vWd~~t~~~i~~~~~~~~~--~~~~~~~-~~~~~~~l~sg~----------~dg~I~iwD~~t~~~~~~~-~~h~~~ 428 (587)
.|++.|..+.+.+..+.....- .+++... ......++++|+ ..|.|.+|++..+++.... ....++
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~ 887 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGA 887 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSC
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCc
Confidence 4788888888888777655433 3333322 223346888887 3588999998755433222 234688
Q ss_pred eeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
|++++-. +| +|+++- ...|++|++...+.++.-. ..-..+..+.+...++++++|..-..|.++..+.. ...+.
T Consensus 888 v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~~~~-~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~--~~~L~ 961 (1158)
T 3ei3_A 888 VYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELRTEC-NHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPM--EGNFE 961 (1158)
T ss_dssp EEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEEEEE-EECCCSCEEEEEEETTEEEEEESSBCEEEEEEETT--TTEEE
T ss_pred CEEEeee-CC-EEEEEc-CCEEEEEECCCCceEEEEe-eccccEEEEEEeccCCEEEEEEhhheEEEEEEEcC--CCeEE
Confidence 9998866 34 455444 4789999998765433111 11112333344445789999988877777654321 11222
Q ss_pred eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC--------CeeEEEEecCC-CCEEEEE---EcCCC------
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS--------CKVFRTLKCHE-GVCIGCE---WHPLE------ 570 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t--------~~~~~~l~~h~-~~V~~v~---~sp~~------ 570 (587)
.+.......+++++.|-.+ ..++.++.+|.|.+..... .++...-.-|- ..|+++. +.+..
T Consensus 962 ~~a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~ 1040 (1158)
T 3ei3_A 962 EIARDFNPNWMSAVEILDD-DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETST 1040 (1158)
T ss_dssp EEEECCSCBCEEEEEEEET-TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------
T ss_pred EEEeecccccEEEEEEEcc-CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccc
Confidence 3333444567777877654 4777899999999997644 22333323343 3566664 23311
Q ss_pred --CCEEEEEECCCcEEE
Q 007855 571 --QSKVATCGWDGLIKY 585 (587)
Q Consensus 571 --~~~l~s~g~DG~I~i 585 (587)
...++-++.+|.|-+
T Consensus 1041 ~~~~~il~~T~~GsIg~ 1057 (1158)
T 3ei3_A 1041 PTQGSVLFGTVNGMIGL 1057 (1158)
T ss_dssp CEEEEEEEEETTSCEEE
T ss_pred cccceEEEEecCCEEEE
Confidence 235888889999865
No 295
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.81 E-value=0.035 Score=61.00 Aligned_cols=280 Identities=9% Similarity=-0.001 Sum_probs=150.2
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc-ccCCceeeEEEecCCCeEEEEeC--CCeEEEEECCCCc
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM-GHSKAVRDISFCNDGTKFLTASY--DKNIKYWDTETGQ 373 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~--Dg~I~vWd~~t~~ 373 (587)
.....|++.+.++++.++-...+.|.+.++ .+....++. ..-.....|++.|.+.+|+.+.. .+.|...++....
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~--dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNL--DGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS 161 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEET--TSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCS
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEEC--CCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCc
Confidence 568899999975777777778899999998 343333333 44556789999997555555543 3567777776443
Q ss_pred EEEEe-ecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEE
Q 007855 374 VIRTF-STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRV 452 (587)
Q Consensus 374 ~i~~~-~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~i 452 (587)
..... .....+..+++.+.. +.++++-...+.|..+|+..................|++..+ ..+++-...+.|..
T Consensus 162 ~~~l~~~~~~~P~Glald~~~--~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~ 238 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLDYEE--QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILA 238 (619)
T ss_dssp CEEEECSSCSSEEEEEEETTT--TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEE
T ss_pred eEEEEeCCCCCCcEEEEEccC--CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEE
Confidence 33222 233455667777643 366666667788999998765433332222233456677644 44444455678888
Q ss_pred EECCCCeEEEEeecC----------CC--------------cceeEEEE-----------eCCC---------------C
Q 007855 453 WEFGIPVVIKYISEP----------HM--------------HSMPSISL-----------HPNT---------------N 482 (587)
Q Consensus 453 wd~~~~~~~~~~~~~----------~~--------------~~i~~i~~-----------sp~g---------------~ 482 (587)
.|..++.....+... |. .....+|+ .|.| .
T Consensus 239 ~d~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~ 318 (619)
T 3s94_A 239 CNKYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATE 318 (619)
T ss_dssp EESSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSE
T ss_pred EECCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCce
Confidence 887655332222110 00 00111222 1111 1
Q ss_pred EEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEE-EEcCCCcEEEEeCCCCeeEEEEecCCCCE
Q 007855 483 WLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVM-SGDGEGKCWFWDWKSCKVFRTLKCHEGVC 561 (587)
Q Consensus 483 ~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~-sgs~dG~I~vwd~~t~~~~~~l~~h~~~V 561 (587)
+|+.+ ..+.|+..++.............+ -..+..++|.+.+..|+ +-...+.|+.+++........+...-...
T Consensus 319 ~Ll~~-~~~~i~~i~l~~~~~~~~~~~~~~---l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p 394 (619)
T 3s94_A 319 LLLLA-RRTDLRRISLDTPDFTDIVLQLED---IRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHP 394 (619)
T ss_dssp EEEEE-ESSCEEEEESSSTTCCCEECCCSC---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCC
T ss_pred EEEEE-cccceEEEecCCCccceeEEeccc---cCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCc
Confidence 22222 234455555543221100001111 12356789998655555 44567889999887644333333333455
Q ss_pred EEEEEcCCCCCEEEEEECCCcEEE
Q 007855 562 IGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 562 ~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.++++...++.+.++-+..+.|.+
T Consensus 395 ~GlAvD~~~~~lY~tD~~~~~I~v 418 (619)
T 3s94_A 395 DGIAVDWVARNLYWTDTGTDRIEV 418 (619)
T ss_dssp CEEEEETTTTEEEEEETTTTEEEE
T ss_pred CceEEecccCcEEEEeCCCCcEEE
Confidence 677777645545555444555544
No 296
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.81 E-value=0.0027 Score=63.95 Aligned_cols=196 Identities=9% Similarity=0.178 Sum_probs=123.3
Q ss_pred EEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC----C---EEEEEEC---CCCEEEEEC
Q 007855 386 VVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN----R---RFVTSSD---DKSLRVWEF 455 (587)
Q Consensus 386 ~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~----~---~l~s~s~---Dg~I~iwd~ 455 (587)
.+-++|......+++.....+-|.+||+ +++.++.+.. +.++.+.+-|+- + +++++.. +++|++|++
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 3444455445567777778889999999 8888888853 678888887632 2 2333333 478999977
Q ss_pred C-CCeEEEEeec---C--CC-cceeEEEE--eCC-CC-EEEEEECCCeEEEEEcCC---c-eeecccceecccccccceE
Q 007855 456 G-IPVVIKYISE---P--HM-HSMPSISL--HPN-TN-WLAAQSLDNQILIYSTRE---R-FQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 456 ~-~~~~~~~~~~---~--~~-~~i~~i~~--sp~-g~-~l~~~s~dg~I~iwd~~~---~-~~~~~~~~~~~~~~~~~i~ 520 (587)
. ....+..+.. + .. ..+..+|+ +|. +. ++++...+|.+..|++.. + ........+.- .+.+-
T Consensus 107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~E 183 (355)
T 3amr_A 107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTE 183 (355)
T ss_dssp CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEE
T ss_pred CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcc
Confidence 3 2223444422 1 11 55667777 664 43 688888899999998842 1 11111222222 24566
Q ss_pred EEEEcCCCCEEEEEcCCCcEEEEeCC-----CCeeEEEEe-cC-CCCEEEEEEc--CCCCCEEEEEE-CCCcEEEcC
Q 007855 521 QVNFSPDGRFVMSGDGEGKCWFWDWK-----SCKVFRTLK-CH-EGVCIGCEWH--PLEQSKVATCG-WDGLIKYWD 587 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~dG~I~vwd~~-----t~~~~~~l~-~h-~~~V~~v~~s--p~~~~~l~s~g-~DG~I~iWD 587 (587)
.+...+...+|+.+-.+.-|+.++.. +++++..+. ++ ...+..|++. +++..+|++++ .+.++.|||
T Consensus 184 gcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd 260 (355)
T 3amr_A 184 GMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD 260 (355)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred eEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence 68888888999999998777777755 455665553 22 2367888874 32222454444 566777775
No 297
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.70 E-value=0.017 Score=57.65 Aligned_cols=161 Identities=9% Similarity=0.102 Sum_probs=106.9
Q ss_pred cCCceeeEEEecCCCeEEEEe-CCCeEEEEECCCCcEEEEeecCC---------cceEEEEccCCCCCcEEEEEe-----
Q 007855 339 HSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQVIRTFSTGK---------IPYVVKLNPDDDKQNILLAGM----- 403 (587)
Q Consensus 339 h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~~---------~~~~~~~~~~~~~~~~l~sg~----- 403 (587)
..---.++.|++....|+.++ ..++|..|+...+..... .... .+..+.+...+..+.++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence 334456889988555555555 799999999986654443 2221 123444421122245666544
Q ss_pred --------CCCcEEEEeCC---CCcEEEEEc--c-----------CCCCeeEEEEecCCCEEEEEECC-CCEEEEECCCC
Q 007855 404 --------SDKKIVQWDMN---TKEITQEYD--Q-----------HLGAVNTITFVDNNRRFVTSSDD-KSLRVWEFGIP 458 (587)
Q Consensus 404 --------~dg~I~iwD~~---t~~~~~~~~--~-----------h~~~I~~i~~sp~~~~l~s~s~D-g~I~iwd~~~~ 458 (587)
.+..|..||+. +++.+.... . -....+.++..++|+..++++.- +.|...+....
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 777665543 1 11358899999999999999888 88777776654
Q ss_pred eEEEEe-ec---CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 459 VVIKYI-SE---PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 459 ~~~~~~-~~---~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
...... .. ......+.|+++|+|..|++....|.|..+|+..
T Consensus 170 ~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 170 TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 322111 11 1223467999999999999887799999999874
No 298
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.69 E-value=0.0016 Score=73.52 Aligned_cols=192 Identities=14% Similarity=0.093 Sum_probs=106.5
Q ss_pred EEEc-cCCCCCcEEEEEeCCC----cEEEEeCCCC-cEEE-EEccCCCCeeEEEEecCCCEEEEEECC-----CCEEEEE
Q 007855 387 VKLN-PDDDKQNILLAGMSDK----KIVQWDMNTK-EITQ-EYDQHLGAVNTITFVDNNRRFVTSSDD-----KSLRVWE 454 (587)
Q Consensus 387 ~~~~-~~~~~~~~l~sg~~dg----~I~iwD~~t~-~~~~-~~~~h~~~I~~i~~sp~~~~l~s~s~D-----g~I~iwd 454 (587)
..++ |++. .++++...+| .|+++|+.++ +.+. .+. .....+.|+|+++.|+....+ ..|++++
T Consensus 179 ~~~S~PDG~--~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~ 253 (751)
T 2xe4_A 179 VKPAPPEHD--LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV 253 (751)
T ss_dssp EEECTTTTC--EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred eEecCCCCC--EEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence 4555 5432 3444444343 4999999988 6321 111 123568899999888877765 2588888
Q ss_pred CCCCe--EEEEeecCCCcceeEEEEeCCCCEEEEEEC---CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCC
Q 007855 455 FGIPV--VIKYISEPHMHSMPSISLHPNTNWLAAQSL---DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 455 ~~~~~--~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~---dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
+.++. ....+..........+.|+|+|++|+..+. ...|.++|+.++........+.... .....++.|+.++.
T Consensus 254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~g~~ 332 (751)
T 2xe4_A 254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHGTSH 332 (751)
T ss_dssp TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEETTTE
T ss_pred CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeeeCCE
Confidence 87753 122222223334567899999999887763 3468888887641100001111111 22233455544444
Q ss_pred EEEEEcCC----CcEEEEeCCCCeeEEE-EecCCC--CEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 530 FVMSGDGE----GKCWFWDWKSCKVFRT-LKCHEG--VCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 530 ~L~sgs~d----G~I~vwd~~t~~~~~~-l~~h~~--~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
+++....+ ..|..+++.++..... +-.|.. .+..+.+. ++.++++...+|..+||
T Consensus 333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEE
T ss_pred EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEE
Confidence 45554443 3677788765322222 333443 34455554 45577777778876654
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.66 E-value=0.012 Score=66.55 Aligned_cols=215 Identities=7% Similarity=-0.074 Sum_probs=130.5
Q ss_pred CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC----cEEEEEccCCCCeeEEEEe
Q 007855 360 YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK----EITQEYDQHLGAVNTITFV 435 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~----~~~~~~~~h~~~I~~i~~s 435 (587)
....|+..++........+.....+..+.+.+. .+.++++-...+.|+.+++... .....+.........|++.
T Consensus 402 n~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~--~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD 479 (791)
T 3m0c_C 402 NRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVA--SNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVD 479 (791)
T ss_dssp CBSSEEEECTTSCCCEEEECSCSSEEEEEEETT--TTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEE
T ss_pred cccceeEeeccCCcceeeecCCCceEEEeeccc--CCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeee
Confidence 446788888887766555555555566666653 3466777777788999998753 2334444455677889999
Q ss_pred cCCCEEE-EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC-C-CeEEEEEcCCceeecccceecc
Q 007855 436 DNNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D-NQILIYSTRERFQLNKKKRFAG 512 (587)
Q Consensus 436 p~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~-d-g~I~iwd~~~~~~~~~~~~~~~ 512 (587)
+.++.|+ +-...+.|.+.++........+. ........|+++|.+.+|+.... . +.|.+.++......... ..
T Consensus 480 ~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv---~~ 555 (791)
T 3m0c_C 480 WIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV---TE 555 (791)
T ss_dssp TTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE---CS
T ss_pred ecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEE---eC
Confidence 7775554 44567789999998665443332 34456789999998666666553 2 67888888654332111 11
Q ss_pred cccccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCCeeEEEEecC--CCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 513 HIVAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSCKVFRTLKCH--EGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~~~~~~l~~h--~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
. -.....|++++.+..|+.+. ..+.|..+++........+... -....+|++.. +.++++-...+.|.
T Consensus 556 ~--l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~--~~lYwtD~~~~~I~ 626 (791)
T 3m0c_C 556 N--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIF 626 (791)
T ss_dssp S--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEE
T ss_pred C--CCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC--CEEEEEECCCCEEE
Confidence 1 13456699997766666554 5668999998655444444332 22345666643 33334333344444
No 300
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.64 E-value=0.017 Score=63.56 Aligned_cols=228 Identities=9% Similarity=-0.012 Sum_probs=133.7
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe-CCCeEEEEECCCCcE-EEEeecC-CcceEEEEccCCC
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS-YDKNIKYWDTETGQV-IRTFSTG-KIPYVVKLNPDDD 394 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s-~Dg~I~vWd~~t~~~-i~~~~~~-~~~~~~~~~~~~~ 394 (587)
...|+..++.............-..+..|+|++.+..|+.+. ..+.|..+++..... ...+..+ ..+..+++.+..
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~- 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG- 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT-
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC-
Confidence 467888888322112222333445678999998666665544 467899999876532 2223332 456677777643
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC--CCCEEEEECCCCeEEEEeecCCCcce
Q 007855 395 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD--DKSLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
++++++-...+.|.+.++........+.........|++.|.+..|+.+.. .+.|...++......... .......
T Consensus 96 -~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~-~~~~~~P 173 (619)
T 3s94_A 96 -EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIII-NSEIYWP 173 (619)
T ss_dssp -TEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-CSSCSSE
T ss_pred -CEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEE-eCCCCCC
Confidence 367777777899999999765443344455667889999997666666653 356766676644332222 2244567
Q ss_pred eEEEEeCCCCEEEEE-ECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeE
Q 007855 473 PSISLHPNTNWLAAQ-SLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVF 551 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~ 551 (587)
..+++++.+..|+.+ ...+.|..+++..............+ ...+++..+ .++++-...+.|...|..+++..
T Consensus 174 ~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~-----P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 174 NGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH-----PFALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEESSSCCEEC--------------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred cEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC-----ceEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 899999976666555 45578999988764433221111112 223667655 44445556788999998877655
Q ss_pred EEE
Q 007855 552 RTL 554 (587)
Q Consensus 552 ~~l 554 (587)
..+
T Consensus 248 ~~i 250 (619)
T 3s94_A 248 REI 250 (619)
T ss_dssp EEC
T ss_pred EEE
Confidence 444
No 301
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.59 E-value=0.00025 Score=79.37 Aligned_cols=239 Identities=7% Similarity=-0.083 Sum_probs=135.7
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEE-eCCCeEEEEECCC----CcEEEEeec-CCcceEEEEcc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTA-SYDKNIKYWDTET----GQVIRTFST-GKIPYVVKLNP 391 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~-s~Dg~I~vWd~~t----~~~i~~~~~-~~~~~~~~~~~ 391 (587)
.+.|++.++ ........+ .....+..|+|++.+..|+.+ ...+.|..+++.+ ......+.. ...+..+++.+
T Consensus 385 ~~~I~~id~-~~~~~~~~~-~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~ 462 (699)
T 1n7d_A 385 RHEVRKMTL-DRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW 462 (699)
T ss_dssp TTC-CEECT-TSCCEECCS-CCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred ccceEEEeC-CCCcceeee-ccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence 357777777 343333222 233457789999866666655 4457899999875 222212211 12234455544
Q ss_pred CCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-C-CCEEEEECCCCeEEEEeecCCC
Q 007855 392 DDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-D-KSLRVWEFGIPVVIKYISEPHM 469 (587)
Q Consensus 392 ~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-D-g~I~iwd~~~~~~~~~~~~~~~ 469 (587)
. .++++++-...+.|.++++........+.........|++.|.+.+|+.+.. . +.|.++++........+ ....
T Consensus 463 ~--~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~-~~~l 539 (699)
T 1n7d_A 463 I--HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV-TENI 539 (699)
T ss_dssp S--SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEES-CSSC
T ss_pred e--CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEE-eCCC
Confidence 3 3356666667789999998766544444434456788999986665555443 2 67888777543322222 1223
Q ss_pred cceeEEEEeCCCCEEE-EEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC
Q 007855 470 HSMPSISLHPNTNWLA-AQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC 548 (587)
Q Consensus 470 ~~i~~i~~sp~g~~l~-~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~ 548 (587)
.....|+|+|++..|+ +-+..+.|.++++.......... .... ......|++..+ .++++-...+.|..++..++
T Consensus 540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~--~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKR--LAHPFSLAVFED-KVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECC-CSSS--CSSCCCCEEETT-EEEEECSTTTCEEEEETTTE
T ss_pred CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEe-cCCc--CCCceEeEEECC-EEEEEeCCCCeEEEEEccCC
Confidence 4567899998765554 44566789999986532221111 1011 111223555443 44455566788999998888
Q ss_pred eeEEEEecCCCCEEEEE
Q 007855 549 KVFRTLKCHEGVCIGCE 565 (587)
Q Consensus 549 ~~~~~l~~h~~~V~~v~ 565 (587)
+.+..+........+|+
T Consensus 616 ~~~~~i~~~~~~P~~i~ 632 (699)
T 1n7d_A 616 SDVNLLAENLLSPEDMV 632 (699)
T ss_dssp EEEECCCTTCSSCCCCC
T ss_pred CceEEeecCCCCCcEEE
Confidence 88777754332334443
No 302
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.58 E-value=0.011 Score=58.20 Aligned_cols=228 Identities=12% Similarity=0.090 Sum_probs=117.6
Q ss_pred CcEEEEEe-CC-----CeEEEEecCCCCeeeEEEcccC-CceeeEEEecCCCeEEEEeCC-----CeEEEEECCCCc---
Q 007855 309 GHLILSAG-MD-----TKVKIWDVFNSGKCMRTYMGHS-KAVRDISFCNDGTKFLTASYD-----KNIKYWDTETGQ--- 373 (587)
Q Consensus 309 g~~L~sgs-~D-----g~I~iWd~~~~~~~~~~~~~h~-~~V~~l~fs~dg~~l~s~s~D-----g~I~vWd~~t~~--- 373 (587)
+.+++.|+ .+ ..+.+||+ .+.+-. .+.... ......+...++..++.|+.+ ..+.+||+.+.+
T Consensus 15 ~~i~~~GG~~~~~~~~~~~~~~d~-~~~~W~-~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 15 EVLLVVGGFGSQQSPIDVVEKYDP-KTQEWS-FLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp EEEEEECCEETTTEECCCEEEEET-TTTEEE-ECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CEEEEEeCccCCCcceeEEEEEcC-CCCeEE-eCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 45666666 32 36788887 343322 221111 111112222356777777755 468999998876
Q ss_pred EEEE--eecCCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCcEEEEEccCCCCe-eEEEEecCCCEEEEEE
Q 007855 374 VIRT--FSTGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDNNRRFVTSS 445 (587)
Q Consensus 374 ~i~~--~~~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~~~~~~~~~h~~~I-~~i~~sp~~~~l~s~s 445 (587)
.... +........+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. -+++.++.|+
T Consensus 93 W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 167 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVV-ASGVIYCLGG 167 (301)
T ss_dssp CEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEE-ETTEEEEECC
T ss_pred eEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEE-ECCEEEEECC
Confidence 3333 2222222223222 23577777654 368899998875443221111111 12222 2677777776
Q ss_pred CC-----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceeccccc
Q 007855 446 DD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 446 ~D-----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ ..|.+||+.+.. ..........
T Consensus 168 ~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~-- 243 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDS-WTTVTSMTTP-- 243 (301)
T ss_dssp BCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEEECCCSSC--
T ss_pred CCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCc-EEECCCCCCc--
Confidence 54 4588999887755443222222222233332 56677777654 568999987643 2112111111
Q ss_pred ccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007855 516 AGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 549 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~ 549 (587)
......+.+ ++++++.|+.+ ..|.+||..+.+
T Consensus 244 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 244 RCYVGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred ccceeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 111112222 67777777755 357889987764
No 303
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.56 E-value=0.023 Score=56.08 Aligned_cols=227 Identities=7% Similarity=0.023 Sum_probs=118.1
Q ss_pred CcEEEEEeC--CCeEEEEecCCCCeeeEE--EcccCCceeeEEEecCCCeEEEEeCC----CeEEEEECCCCcEEEEeec
Q 007855 309 GHLILSAGM--DTKVKIWDVFNSGKCMRT--YMGHSKAVRDISFCNDGTKFLTASYD----KNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 309 g~~L~sgs~--Dg~I~iWd~~~~~~~~~~--~~~h~~~V~~l~fs~dg~~l~s~s~D----g~I~vWd~~t~~~i~~~~~ 380 (587)
+.+++.|+. ...+.+||. .+.+-... +......-..+ .-++..++.|+.+ ..+.+||+.+++-...-..
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~-~~~~W~~~~~~p~~r~~~~~~--~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNP-KDYSWTDIRCPFEKRRDAACV--FWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp CEEEEEECCSSTTSEEEEET-TTTEEEECCCCSCCCBSCEEE--EETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred ceEEEEeCCCCCceEEEecC-CCCCEecCCCCCcccceeEEE--EECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 345566654 356888887 34332211 11111111122 2366677777754 6788999988865443322
Q ss_pred --CCcceEEEEccCCCCCcEEEEEeCC------CcEEEEeCCCCcEEEEEccCCCCe-eEEEEecCCCEEEEEEC-----
Q 007855 381 --GKIPYVVKLNPDDDKQNILLAGMSD------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDNNRRFVTSSD----- 446 (587)
Q Consensus 381 --~~~~~~~~~~~~~~~~~~l~sg~~d------g~I~iwD~~t~~~~~~~~~h~~~I-~~i~~sp~~~~l~s~s~----- 446 (587)
......+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. -++..++.|+.
T Consensus 89 p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~ 163 (306)
T 3ii7_A 89 PTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNV 163 (306)
T ss_dssp SSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTT
T ss_pred CccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCC
Confidence 2222222222 23577777765 468999998876443321111111 12222 25667777653
Q ss_pred ----CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceeccccccc
Q 007855 447 ----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 447 ----Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..|.+||+.+.. ......+... ..
T Consensus 164 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~ 239 (306)
T 3ii7_A 164 SGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWK--GV 239 (306)
T ss_dssp TCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCC--BS
T ss_pred cccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCC--cc
Confidence 34588999988754433222222222233333 56666666543 468889987642 2222221111 11
Q ss_pred ceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCe
Q 007855 518 YACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCK 549 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~ 549 (587)
....+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 240 ~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 240 TVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 1222223 67777888754 468999988764
No 304
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.54 E-value=0.032 Score=55.87 Aligned_cols=230 Identities=8% Similarity=0.053 Sum_probs=120.8
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc---ccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM---GHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~ 372 (587)
...+.+|.|.+ +..++. +..+.|.. ....++.-.... .+...+..|.+.+++..++++ .++.|.. ..+.|
T Consensus 79 ~~~~~~i~~~~--~~~~~~-g~~g~i~~--S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG 151 (327)
T 2xbg_A 79 DYRFNSVSFQG--NEGWIV-GEPPIMLH--TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSG 151 (327)
T ss_dssp CCEEEEEEEET--TEEEEE-EETTEEEE--ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTT
T ss_pred CccEEEEEecC--CeEEEE-ECCCeEEE--ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCC
Confidence 34588888875 344444 45665544 223344333322 234567888888777666555 4554422 23334
Q ss_pred cEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEE-EeC--CCCcEEEEEccCCCCeeEEEEecCCCEEEEEECC
Q 007855 373 QVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQ-WDM--NTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDD 447 (587)
Q Consensus 373 ~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~i-wD~--~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~D 447 (587)
+.-...... .....+.+.+. +.++++ +..|.|.. .|- .+-+.+ -......+..+.+.+++..+ .++.+
T Consensus 152 ~tW~~~~~~~~~~~~~~~~~~~---~~~~~~-g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~ 224 (327)
T 2xbg_A 152 KNWQALVQEAIGVMRNLNRSPS---GEYVAV-SSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNG 224 (327)
T ss_dssp SSEEEEECSCCCCEEEEEECTT---SCEEEE-ETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETT
T ss_pred CCCEEeecCCCcceEEEEEcCC---CcEEEE-ECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCC
Confidence 333333222 22334444443 234444 44555544 342 222222 22345678899998888654 55667
Q ss_pred CCEEEEECCCCeEEEEeecC---CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEE
Q 007855 448 KSLRVWEFGIPVVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNF 524 (587)
Q Consensus 448 g~I~iwd~~~~~~~~~~~~~---~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~ 524 (587)
|.|++.+...+.....+..+ ....+.++.+.+++.+++++. ++.| ++....+............ ...+.++.|
T Consensus 225 G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~--~~~~~~v~~ 300 (327)
T 2xbg_A 225 GKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKV--PSNFYKILF 300 (327)
T ss_dssp TEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTS--SSCCCEEEE
T ss_pred ceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCC--CCCeEEEEE
Confidence 88777653334433333322 223578888988877666654 6766 3444444333222211111 133456778
Q ss_pred cCCCCEEEEEcCCCcEEEEe
Q 007855 525 SPDGRFVMSGDGEGKCWFWD 544 (587)
Q Consensus 525 spdg~~L~sgs~dG~I~vwd 544 (587)
.+++. +++++.+|.|.-++
T Consensus 301 ~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 301 FSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp EETTE-EEEECSTTEEEEEC
T ss_pred ECCCc-eEEEcCCceEEEEc
Confidence 75554 55666788777665
No 305
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.53 E-value=0.021 Score=56.29 Aligned_cols=226 Identities=9% Similarity=0.122 Sum_probs=115.4
Q ss_pred cEEEEEeCC----CeEEEEecCCCCeeeEEEcccC-Cce-eeEEEecCCCeEEEEeCC-----CeEEEEECCCCcEEEEe
Q 007855 310 HLILSAGMD----TKVKIWDVFNSGKCMRTYMGHS-KAV-RDISFCNDGTKFLTASYD-----KNIKYWDTETGQVIRTF 378 (587)
Q Consensus 310 ~~L~sgs~D----g~I~iWd~~~~~~~~~~~~~h~-~~V-~~l~fs~dg~~l~s~s~D-----g~I~vWd~~t~~~i~~~ 378 (587)
.+++.|+.+ ..+.+||+ ....-. .+.... ... .+++ .-++..++.|+.+ ..+.+||..+.+-...-
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~-~~~~W~-~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~ 93 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDF-KEERWH-QVAELPSRRCRAGMV-YMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA 93 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEET-TTTEEE-EECCCSSCCBSCEEE-EETTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred EEEEECCCCCCCCCcEEEEcC-cCCcEe-EcccCCcccccceEE-EECCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence 455555543 35778887 343322 221111 111 1222 2266677777754 35889999887654433
Q ss_pred ec--CCcceEEEEccCCCCCcEEEEEeCCC-----cEEEEeCCCCcEEEEEccCCC-CeeEEEEecCCCEEEEEECC---
Q 007855 379 ST--GKIPYVVKLNPDDDKQNILLAGMSDK-----KIVQWDMNTKEITQEYDQHLG-AVNTITFVDNNRRFVTSSDD--- 447 (587)
Q Consensus 379 ~~--~~~~~~~~~~~~~~~~~~l~sg~~dg-----~I~iwD~~t~~~~~~~~~h~~-~I~~i~~sp~~~~l~s~s~D--- 447 (587)
.. ......+... ++.+++.|+.++ .+.+||+.+.+-...-..... .-.+++. -++..++.|+.+
T Consensus 94 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 168 (302)
T 2xn4_A 94 NMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVAS 168 (302)
T ss_dssp CCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTT
T ss_pred CCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCC
Confidence 22 2222222222 235777777653 578899887764433111111 1112222 256677776542
Q ss_pred ----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceecccccccc
Q 007855 448 ----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAGY 518 (587)
Q Consensus 448 ----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~ 518 (587)
..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ +.+.+||+.+.. .......... ...
T Consensus 169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~--r~~ 244 (302)
T 2xn4_A 169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNA-WRQVADMNMC--RRN 244 (302)
T ss_dssp TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTE-EEEECCCSSC--CBS
T ss_pred CccccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCC-EeeCCCCCCc--ccc
Confidence 3588999987754443222222222233333 56777777654 468899987642 2111111111 111
Q ss_pred eEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCCe
Q 007855 519 ACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCK 549 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG-----~I~vwd~~t~~ 549 (587)
...+.+ ++++++.|+.++ .|.+||..+.+
T Consensus 245 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 245 AGVCAV--NGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CeEEEE--CCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 111222 677777777553 48999988765
No 306
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.48 E-value=0.055 Score=54.87 Aligned_cols=232 Identities=13% Similarity=0.072 Sum_probs=119.8
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE--EEEee----cCCcceEEEEccCCCCCcEEEEEeC-C-----CcE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV--IRTFS----TGKIPYVVKLNPDDDKQNILLAGMS-D-----KKI 408 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~--i~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~-d-----g~I 408 (587)
..-..|+|.|+|++++ +...+.|.+++ .++. +..+. ....+.-+++.++-.....|+++.. . ..|
T Consensus 31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 4567999999998554 55679999998 4432 22222 1234567778775222233444433 2 678
Q ss_pred EEEeCCCCc------EEEEEc---cCCCCeeEEEEecCCCEEEEEECC-------------CCEEEEECCCCe-------
Q 007855 409 VQWDMNTKE------ITQEYD---QHLGAVNTITFVDNNRRFVTSSDD-------------KSLRVWEFGIPV------- 459 (587)
Q Consensus 409 ~iwD~~t~~------~~~~~~---~h~~~I~~i~~sp~~~~l~s~s~D-------------g~I~iwd~~~~~------- 459 (587)
..|+...+. ++..+. ........|+|.|+|.++++.+.. |.|.-++.....
T Consensus 108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~ 187 (352)
T 2ism_A 108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL 187 (352)
T ss_dssp EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence 888876432 122233 111234689999999776665432 345545443200
Q ss_pred -----EEEEeecCCCcceeEEEEeC-CCCEEEEEECCCeE------EEEEcCCcee---------------ecccceecc
Q 007855 460 -----VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDNQI------LIYSTRERFQ---------------LNKKKRFAG 512 (587)
Q Consensus 460 -----~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg~I------~iwd~~~~~~---------------~~~~~~~~~ 512 (587)
....+...+ .....++|+| ++.++++-...+.+ .|.-+..+.. ......+..
T Consensus 188 ~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 266 (352)
T 2ism_A 188 GRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQ 266 (352)
T ss_dssp TCTTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCC
Confidence 000111112 2356789999 66655554433331 1222222110 001111111
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee------EEEEecCCCCEEEEEEcCCCCCEEEEEE-CCC
Q 007855 513 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV------FRTLKCHEGVCIGCEWHPLEQSKVATCG-WDG 581 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~------~~~l~~h~~~V~~v~~sp~~~~~l~s~g-~DG 581 (587)
+ .....++| .+|.++++.-..+.|...++..... ...+-.-...+..+++.| ++.++++.. .+|
T Consensus 267 ~---~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~p-dG~lyv~~~~~~g 337 (352)
T 2ism_A 267 G---FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGP-DGALYVTTSNRDG 337 (352)
T ss_dssp C---CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECT-TSCEEEEECSTTT
T ss_pred C---CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECC-CCcEEEEEeCCCC
Confidence 1 22345666 4676666666677788887754321 122222335789999999 556555543 344
No 307
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.39 E-value=0.08 Score=58.17 Aligned_cols=219 Identities=11% Similarity=-0.030 Sum_probs=134.9
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeE
Q 007855 354 KFLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNT 431 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~ 431 (587)
+|+.+ ....|+..++.+......+... ..+..+.+.+. .+.++++-..++.|..+++........+.........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~--~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G 84 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVT--DNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG 84 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETT--TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECC--CCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce
Confidence 44443 4578999999876654444433 34556666653 4467777778899999998766544444444456788
Q ss_pred EEEecCCCEEE-EEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC--CCeEEEEEcCCceeecccc
Q 007855 432 ITFVDNNRRFV-TSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL--DNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 432 i~~sp~~~~l~-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~--dg~I~iwd~~~~~~~~~~~ 508 (587)
|++.+.+..|+ +-...+.|.+.++........+ .........|+++|...+|+.... .+.|...++.........
T Consensus 85 lAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~-~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~- 162 (628)
T 4a0p_A 85 MAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLV-WKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLV- 162 (628)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSTTCEEEE-CSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEE-
T ss_pred EEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEE-eCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEE-
Confidence 99987655554 4445678999998765432222 234455789999996666666553 567888887654322111
Q ss_pred eecccccccceEEEEEcCCCCEEEEE-cCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVMSG-DGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~sg-s~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
.+ -.....|++++++..|+.+ ...+.|..+|+..... ..+...-....++++.. +.+++|-...+.|..
T Consensus 163 --~~---~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~P~glav~~--~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 163 --PN---VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPHPFGLTQYQ--DYIYWTDWSRRSIER 232 (628)
T ss_dssp --CS---CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSCEEEEEEET--TEEEEEETTTTEEEE
T ss_pred --CC---CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCCceEEEEEC--CEEEEecCCCCEEEE
Confidence 11 2345679999987766655 4567899999865443 33333334456777754 334444333555554
No 308
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.35 E-value=0.08 Score=53.65 Aligned_cols=227 Identities=9% Similarity=0.075 Sum_probs=118.0
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEc---ccCCceeeEEEecC---CCeEEEEeC-C-----Ce
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYM---GHSKAVRDISFCND---GTKFLTASY-D-----KN 363 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~---~h~~~V~~l~fs~d---g~~l~s~s~-D-----g~ 363 (587)
-..-..|+|.|+ +.++++ ...|.|++++ ......+..+. ........|+|+|+ +..|+.+.. . ..
T Consensus 30 l~~P~~ia~~pd-G~l~V~-e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPD-GGMLIA-ERPGRIRLFR-EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTT-SCEEEE-ETTTEEEEEE-TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCC-CeEEEE-eCCCeEEEEE-CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 445779999999 775555 5669999988 22222222221 22356889999998 555554433 2 57
Q ss_pred EEEEECCCCc-----EE-EEeec----CCcceEEEEccCCCCCcEEEEEeC-------------CCcEEEEeCCCC----
Q 007855 364 IKYWDTETGQ-----VI-RTFST----GKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNTK---- 416 (587)
Q Consensus 364 I~vWd~~t~~-----~i-~~~~~----~~~~~~~~~~~~~~~~~~l~sg~~-------------dg~I~iwD~~t~---- 416 (587)
|..|+...+. .+ ..+.. .+.+..+.+.+++ .++++.+. .|.|.-++....
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDG---MLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTS---CEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCC---CEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 8888876542 11 22321 2344567777754 34444321 256666665430
Q ss_pred ----------cEEEEEccCCCCeeEEEEec-CCCEEEEEECCCCE------EEEECCCCe------------------EE
Q 007855 417 ----------EITQEYDQHLGAVNTITFVD-NNRRFVTSSDDKSL------RVWEFGIPV------------------VI 461 (587)
Q Consensus 417 ----------~~~~~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~I------~iwd~~~~~------------------~~ 461 (587)
..+.. .++ .....++|+| ++.++++-.....+ .|.-+..+. ++
T Consensus 184 npf~~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 184 NPFLGRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp CTTTTCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CcccCCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 01111 122 3356789998 56655554333331 122211111 11
Q ss_pred EEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee---ecccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 462 KYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ---LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 462 ~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
..+ ........+++ .+|.++++....+.|...++..... ......+.. ....+..+++.|||.++++..
T Consensus 262 ~~~--~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~--~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 262 YFW--PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALS--GFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp EEC--TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEE--SSCCEEEEEECTTSCEEEEEC
T ss_pred Eec--CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecc--cCCCeeEEEECCCCcEEEEEe
Confidence 111 11223456666 4666666666667788877654321 100111111 124577899999998766654
No 309
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.27 E-value=0.041 Score=54.53 Aligned_cols=227 Identities=9% Similarity=0.104 Sum_probs=114.9
Q ss_pred EEEEEeCCCeEEEEecCCCCeeeE-EEcccCCceeeEEEecCCCeEEEEeC----C-------CeEEEEECCCCcEEEEe
Q 007855 311 LILSAGMDTKVKIWDVFNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY----D-------KNIKYWDTETGQVIRTF 378 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~----D-------g~I~vWd~~t~~~i~~~ 378 (587)
+++.|+ ..+.+||. .+.+-.. .+..........+...++..++.|+. + ..+.+||..+++-...-
T Consensus 7 l~~~GG--~~~~~yd~-~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 83 (315)
T 4asc_A 7 IFMISE--EGAVAYDP-AANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP 83 (315)
T ss_dssp EEEEET--TEEEEEET-TTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred EEEEcC--CceEEECC-CCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence 445555 57889998 4444322 22211122233333447778888874 1 12778898887653322
Q ss_pred ecCC--cceEEEEccCCCCCcEEEEEeCC--------CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-C
Q 007855 379 STGK--IPYVVKLNPDDDKQNILLAGMSD--------KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-D 447 (587)
Q Consensus 379 ~~~~--~~~~~~~~~~~~~~~~l~sg~~d--------g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-D 447 (587)
.... ....+... ++.+++.|+.+ ..+.+||+.+.+-...-..........+..-+++.++.|+. +
T Consensus 84 ~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 84 PLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp CBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCT
T ss_pred CCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCC
Confidence 2211 11122222 23567777632 46899999887543321111111111122236677777775 2
Q ss_pred -----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCC-----eEEEEEcCCceeecccceeccccccc
Q 007855 448 -----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN-----QILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 448 -----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
..+.+||..+..-...-..+....-.+++.. ++++++.|+.++ .+.+||+.+.. .......... ..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~ 235 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQE--RS 235 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSC--CB
T ss_pred CCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCc--cc
Confidence 4689999887754332222222222233333 667777776553 58888887642 2222211111 11
Q ss_pred ceEEEEEcCCCCEEEEEcCCC--------------cEEEEeCCCCee
Q 007855 518 YACQVNFSPDGRFVMSGDGEG--------------KCWFWDWKSCKV 550 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG--------------~I~vwd~~t~~~ 550 (587)
....+.+ ++++++.|+.++ .|.+||..+.+-
T Consensus 236 ~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W 280 (315)
T 4asc_A 236 SLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKW 280 (315)
T ss_dssp SCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEE
T ss_pred ceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChh
Confidence 1111222 567777776532 377888877653
No 310
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.26 E-value=0.017 Score=56.75 Aligned_cols=217 Identities=11% Similarity=0.026 Sum_probs=109.4
Q ss_pred CCCeEEEEe-CC-----CeEEEEECCCCcEEEEeec--CCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCc
Q 007855 351 DGTKFLTAS-YD-----KNIKYWDTETGQVIRTFST--GKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKE 417 (587)
Q Consensus 351 dg~~l~s~s-~D-----g~I~vWd~~t~~~i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~~ 417 (587)
++..++.|+ .+ ..+.+||+.+++-...-.. ......+.. . ++.+++.|+.+ ..+.+||+.+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~---~~~l~v~GG~~~~~~~~~~~~~d~~~~~ 89 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVS-L---HDRIYVIGGYDGRSRLSSVECLDYTADE 89 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E---TTEEEEECCBCSSCBCCCEEEEETTCCT
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEE-E---CCEEEEEcCCCCCccCceEEEEECCCCC
Confidence 344555555 22 4688899887764432221 112222222 1 23577777755 468999998876
Q ss_pred ---EEEEEccCCCCe-eEEEEecCCCEEEEEECC-----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE
Q 007855 418 ---ITQEYDQHLGAV-NTITFVDNNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 418 ---~~~~~~~h~~~I-~~i~~sp~~~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s 488 (587)
....-....... .+++. -++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++++++.|+
T Consensus 90 ~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 167 (301)
T 2vpj_A 90 DGVWYSVAPMNVRRGLAGATT-LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA-SGVIYCLGG 167 (301)
T ss_dssp TCCCEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE-TTEEEEECC
T ss_pred CCeeEECCCCCCCccceeEEE-ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE-CCEEEEECC
Confidence 333211111111 12222 267777777654 3588899887654433222222222233333 666777766
Q ss_pred CC-----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEEEecC-
Q 007855 489 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKCH- 557 (587)
Q Consensus 489 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~~~~~l~~h- 557 (587)
.+ ..+.+||+.+.. ......+... ......+.+ ++++++.|+.+ ..|.+||+.+.+-...-...
T Consensus 168 ~~~~~~~~~~~~~d~~~~~-W~~~~~~p~~--r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 242 (301)
T 2vpj_A 168 YDGLNILNSVEKYDPHTGH-WTNVTPMATK--RSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTT 242 (301)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEEECCCSSC--CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSS
T ss_pred CCCCcccceEEEEeCCCCc-EEeCCCCCcc--cccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCC
Confidence 54 468889986642 2111111111 111111222 56777777654 46899999877543221111
Q ss_pred -CCCEEEEEEcCCCCCEEEEEECCC
Q 007855 558 -EGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 558 -~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
......+.+ ++.+++.||.++
T Consensus 243 ~r~~~~~~~~---~~~i~v~GG~~~ 264 (301)
T 2vpj_A 243 PRCYVGATVL---RGRLYAIAGYDG 264 (301)
T ss_dssp CCBSCEEEEE---TTEEEEECCBCS
T ss_pred cccceeEEEE---CCEEEEEcCcCC
Confidence 111222222 455777777653
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.22 E-value=0.0018 Score=72.36 Aligned_cols=205 Identities=12% Similarity=0.041 Sum_probs=118.1
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCC---CeeeEEEcccCCceeeEEEecC-CCeEEEEeCCCeEEEEECCCC
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNS---GKCMRTYMGHSKAVRDISFCND-GTKFLTASYDKNIKYWDTETG 372 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~---~~~~~~~~~h~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~ 372 (587)
..+..|+|.+..+.++++-...+.|+.+++... ......+.........|++.+. ++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 456788999874555566566788999988320 1222122122234567888864 444455455788999998866
Q ss_pred cEEEEeec-CCcceEEEEccCCCCCcEEEEEeCC-CcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEE-EEECCCC
Q 007855 373 QVIRTFST-GKIPYVVKLNPDDDKQNILLAGMSD-KKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFV-TSSDDKS 449 (587)
Q Consensus 373 ~~i~~~~~-~~~~~~~~~~~~~~~~~~l~sg~~d-g~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~-s~s~Dg~ 449 (587)
.....+.. ...+..+++.+.. +.++++-... +.|..+++........+.......+.|+|++++..|+ +-+..+.
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~ 563 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS 563 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTE
T ss_pred ceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCe
Confidence 54444432 2445566666543 3444444333 7888887754332222223345677899998755554 4455678
Q ss_pred EEEEECCCCeEEEEeec-CCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 450 LRVWEFGIPVVIKYISE-PHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 450 I~iwd~~~~~~~~~~~~-~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
|.++++........+.. ........|++..+ .++++....+.|..++..++..+
T Consensus 564 I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~ 618 (699)
T 1n7d_A 564 ISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDV 618 (699)
T ss_dssp EEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEE
T ss_pred EEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCce
Confidence 99999865433322221 11223445666544 44555556788999987666544
No 312
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.20 E-value=0.017 Score=67.69 Aligned_cols=238 Identities=11% Similarity=0.111 Sum_probs=140.0
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCCCCc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQN 397 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~~~~ 397 (587)
...|.|-|+.+.....+.-..-. +.-.+|..+.++.-. ..++.|+|+++.+.+..+.....+...+|.. ..
T Consensus 47 ~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~VvfWkWis--~~-- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDDVTFWKWIS--LN-- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccccch----hhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCCceEEEecC--CC--
Confidence 34788888855444433322222 233667666555544 6899999999999999888877655555544 32
Q ss_pred EEEEEeCCCcEEEEeCCC-CcEEEEEccC----CCCeeEEEEecCCCEEEEEE-------CCCCEEEEECCCCeEEEEee
Q 007855 398 ILLAGMSDKKIVQWDMNT-KEITQEYDQH----LGAVNTITFVDNNRRFVTSS-------DDKSLRVWEFGIPVVIKYIS 465 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t-~~~~~~~~~h----~~~I~~i~~sp~~~~l~s~s-------~Dg~I~iwd~~~~~~~~~~~ 465 (587)
.|... .+..|+.|++.. ..++..+..| ...|..-..+++.++++..| -.|.+.+|....... ...
T Consensus 118 ~l~lV-T~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s--Q~i 194 (1630)
T 1xi4_A 118 TVALV-TDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS--QPI 194 (1630)
T ss_pred eeEEE-cCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc--hhh
Confidence 23332 346899999964 3444445544 45677777788888877654 347788888765432 122
Q ss_pred cCCCcceeEEEEeC---CCCEEEEEEC---CCeEEEEEcCCc---eeecccc----eecccccccceEEEEEcCCCCEEE
Q 007855 466 EPHMHSMPSISLHP---NTNWLAAQSL---DNQILIYSTRER---FQLNKKK----RFAGHIVAGYACQVNFSPDGRFVM 532 (587)
Q Consensus 466 ~~~~~~i~~i~~sp---~g~~l~~~s~---dg~I~iwd~~~~---~~~~~~~----~~~~~~~~~~i~~l~~spdg~~L~ 532 (587)
.+|......+.+.. ....++.+.. .+.++|.++... ......+ .++..........+..|+.-..+.
T Consensus 195 egha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 195 EGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred hHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 23333332222211 1123332222 268888887432 1111111 111111233445688888888999
Q ss_pred EEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEc
Q 007855 533 SGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 533 sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~s 567 (587)
..+.-|.|+++|+.|+.++..-+-...+|...+-+
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~ 309 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH 309 (1630)
T ss_pred EEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence 99999999999999998876555444444443333
No 313
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.19 E-value=0.23 Score=50.21 Aligned_cols=228 Identities=11% Similarity=0.062 Sum_probs=121.1
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCe-eeEEEc---ccCCceeeEEEecC---CCeEEEEeC----C---
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGK-CMRTYM---GHSKAVRDISFCND---GTKFLTASY----D--- 361 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~-~~~~~~---~h~~~V~~l~fs~d---g~~l~s~s~----D--- 361 (587)
-.....|+|.|+ +.++++ ..+|.|++++. .+. .+..+. ........|+|+|+ +..|+.+.. +
T Consensus 28 l~~P~~ia~~pd-G~l~V~-e~~g~I~~~d~--~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~ 103 (354)
T 3a9g_A 28 LEVPWSIAPLGG-GRYLVT-ERPGRLVLISP--SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHI 103 (354)
T ss_dssp CSCEEEEEEEET-TEEEEE-ETTTEEEEECS--SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCE
T ss_pred CCCCeEEEEcCC-CeEEEE-eCCCEEEEEeC--CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCc
Confidence 445789999998 775554 55699999874 443 222221 12356889999997 455554433 3
Q ss_pred -CeEEEEECCCC-------cEE-EEeec--CCcceEEEEccCCCCCcEEEEEeC-------------CCcEEEEeCCCC-
Q 007855 362 -KNIKYWDTETG-------QVI-RTFST--GKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWDMNTK- 416 (587)
Q Consensus 362 -g~I~vWd~~t~-------~~i-~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~-------------dg~I~iwD~~t~- 416 (587)
..|..|+.... +.+ ..+.. .+....+.|.+++ .++++.+. .|.|.-++....
T Consensus 104 ~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG---~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 104 RNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDG---MLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTS---CEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred ceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCC---cEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777877654 111 11221 2344567777754 34444322 245666665432
Q ss_pred --------cEEEEEccCCCCeeEEEEec-CCCEEEEEECCCC---EEEEECCC----------------CeEEEEeecCC
Q 007855 417 --------EITQEYDQHLGAVNTITFVD-NNRRFVTSSDDKS---LRVWEFGI----------------PVVIKYISEPH 468 (587)
Q Consensus 417 --------~~~~~~~~h~~~I~~i~~sp-~~~~l~s~s~Dg~---I~iwd~~~----------------~~~~~~~~~~~ 468 (587)
..+.. .++ .....|+|+| ++.++++-..... |.+..-.. ..++..+. ..
T Consensus 181 p~~npf~~~~i~a-~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~~ 257 (354)
T 3a9g_A 181 PADNPFPNSPIWS-YGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-SE 257 (354)
T ss_dssp CTTSSSTTCCEEE-ECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-TC
T ss_pred CCCCCCCCCcEEE-Ecc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-CC
Confidence 01111 122 3456799999 5655444322221 33322110 00111110 11
Q ss_pred CcceeEEEEe-------CCCCEEEEEECCCeEEEEEcCCceeecccce-ecccccccceEEEEEcCCCCEEEEEc
Q 007855 469 MHSMPSISLH-------PNTNWLAAQSLDNQILIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 469 ~~~i~~i~~s-------p~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
......+++. .+|.++++....+.|..+++.....+..... +.+. ...+..+++.|||.+.++..
T Consensus 258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNV--FGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTT--SCCEEEEEECTTSCEEEEEC
T ss_pred CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCC--CCCeeEEEECCCCcEEEEEe
Confidence 2346677773 4677777766778888888864321211111 2111 34577899999997666654
No 314
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.014 Score=58.76 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=109.4
Q ss_pred CeEEEEeCCCeEEEEECCCCcEEEEeecCC-cceEEEEccCC-CCCcEEEEE-eCCCcEEEEeCCCCcEEEEEcc----C
Q 007855 353 TKFLTASYDKNIKYWDTETGQVIRTFSTGK-IPYVVKLNPDD-DKQNILLAG-MSDKKIVQWDMNTKEITQEYDQ----H 425 (587)
Q Consensus 353 ~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~-~~~~~~~~~~~-~~~~~l~sg-~~dg~I~iwD~~t~~~~~~~~~----h 425 (587)
..++.++.||.|.-+|..+|+.+..+.... .+....-.+.. ..+..++.. +.||.|..++..+|.....+.. .
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 478899999999999999999999998761 12121111111 122333343 6899999999998865544321 1
Q ss_pred CCCeeE---EEE-----ecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcc------eeEEEEe-----CCCCEEEE
Q 007855 426 LGAVNT---ITF-----VDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHS------MPSISLH-----PNTNWLAA 486 (587)
Q Consensus 426 ~~~I~~---i~~-----sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~------i~~i~~s-----p~g~~l~~ 486 (587)
..++.. ..+ +..+..+++++.+|.+...|+.+++.+..+....... ..|.... -.+..|+.
T Consensus 91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i 170 (339)
T 2be1_A 91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI 170 (339)
T ss_dssp TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence 122221 000 0145678999999999999999999998885432211 1111111 12456777
Q ss_pred EECCCeEEEEEcCCceeeccc-ceecccccccce-EEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEE
Q 007855 487 QSLDNQILIYSTRERFQLNKK-KRFAGHIVAGYA-CQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFR 552 (587)
Q Consensus 487 ~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~i-~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~ 552 (587)
+..+..|.+.+ +++...... ..+........+ ....++.++.+ +.++.||.|..+|..+|..+.
T Consensus 171 g~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 171 GKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred ecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 77677666665 333211100 001111000000 00011234555 446778888888887777665
No 315
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.18 E-value=0.039 Score=54.53 Aligned_cols=228 Identities=11% Similarity=0.045 Sum_probs=114.9
Q ss_pred CcEEEEEeC----CCeEEEEecCCCCeeeEEEcccC-Cce-eeEEEecCCCeEEEEeC----C-----CeEEEEECCCCc
Q 007855 309 GHLILSAGM----DTKVKIWDVFNSGKCMRTYMGHS-KAV-RDISFCNDGTKFLTASY----D-----KNIKYWDTETGQ 373 (587)
Q Consensus 309 g~~L~sgs~----Dg~I~iWd~~~~~~~~~~~~~h~-~~V-~~l~fs~dg~~l~s~s~----D-----g~I~vWd~~t~~ 373 (587)
+.+++.|+. -..+.+||. .+.+-. .+.... ... .+++ .-++..++.|+. + ..+.+||+.+.+
T Consensus 25 ~~i~v~GG~~~~~~~~~~~~d~-~~~~W~-~~~~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~ 101 (308)
T 1zgk_A 25 RLIYTAGGYFRQSLSYLEAYNP-SNGTWL-RLADLQVPRSGLAGC-VVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ 101 (308)
T ss_dssp CCEEEECCBSSSBCCCEEEEET-TTTEEE-ECCCCSSCCBSCEEE-EETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred CEEEEEeCcCCCCcceEEEEcC-CCCeEe-ECCCCCcccccceEE-EECCEEEEECCCcCCCCCCeecceEEEECCCCCe
Confidence 456666653 235788887 343322 221111 111 1222 225667777665 2 468889998876
Q ss_pred EEEEee--cCCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCcEEEEEccCCCC-eeEEEEecCCCEEEEEE
Q 007855 374 VIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQEYDQHLGA-VNTITFVDNNRRFVTSS 445 (587)
Q Consensus 374 ~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~~~~~~~~~h~~~-I~~i~~sp~~~~l~s~s 445 (587)
....-. .......+... ++.+++.|+.+ ..+.+||+.+.+-...-...... -.+++.. ++..++.|+
T Consensus 102 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 102 WSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp EEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred EeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 443322 12222222222 23567776643 46889999877543321111111 1122222 667777776
Q ss_pred CC-----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceeccccc
Q 007855 446 DD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIV 515 (587)
Q Consensus 446 ~D-----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~ 515 (587)
.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ ..+.+||+.+.. ......+...
T Consensus 177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~-W~~~~~~p~~-- 252 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET-WTFVAPMKHR-- 252 (308)
T ss_dssp BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE-EEECCCCSSC--
T ss_pred CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCc-EEECCCCCCC--
Confidence 54 4588999887654432222222222233333 66677777654 568999987642 2222221111
Q ss_pred ccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCee
Q 007855 516 AGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKV 550 (587)
Q Consensus 516 ~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~~ 550 (587)
......+.+ ++++++.|+.+ ..|.+||..+.+-
T Consensus 253 r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 290 (308)
T 1zgk_A 253 RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDTW 290 (308)
T ss_dssp CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE
T ss_pred ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCEE
Confidence 111111222 56777777654 3578888877643
No 316
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.16 E-value=0.041 Score=54.06 Aligned_cols=215 Identities=8% Similarity=-0.006 Sum_probs=107.1
Q ss_pred CeEEEEeCC----CeEEEEECCCCcEEEEee--cCCcceEEEEccCCCCCcEEEEEeCC-----CcEEEEeCCCCcEEEE
Q 007855 353 TKFLTASYD----KNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSD-----KKIVQWDMNTKEITQE 421 (587)
Q Consensus 353 ~~l~s~s~D----g~I~vWd~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~d-----g~I~iwD~~t~~~~~~ 421 (587)
..++.|+.+ ..+.+||+.+.+-...-. .......+... ++.+++.|+.+ ..+.+||+.+.+-...
T Consensus 17 ~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 17 LMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM----AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp EEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE----CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344445432 457888888776443322 11112222222 23577777754 3688999988764433
Q ss_pred EccCCCC-eeEEEEecCCCEEEEEECCC-----CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC------
Q 007855 422 YDQHLGA-VNTITFVDNNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL------ 489 (587)
Q Consensus 422 ~~~h~~~-I~~i~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~------ 489 (587)
-...... -.+++. -++..++.|+.++ .+.+||+.+..-...-..+....-.+++.. ++++++.|+.
T Consensus 93 ~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~ 170 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV-LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV-GGLLYAVGGYDVASRQ 170 (302)
T ss_dssp CCCSSCCBSCEEEE-ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTTTE
T ss_pred CCCCccccceEEEE-ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE-CCEEEEEeCCCCCCCc
Confidence 2111111 122222 2677778887654 477888887664443222222222233333 5666666653
Q ss_pred -CCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEEEec--CCCCE
Q 007855 490 -DNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRTLKC--HEGVC 561 (587)
Q Consensus 490 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~~~~~l~~--h~~~V 561 (587)
-..+.+||+.+.. ......+... ......+.+ ++++++.|+.+ ..+.+||..+.+-...-.. .....
T Consensus 171 ~~~~~~~yd~~~~~-W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~ 245 (302)
T 2xn4_A 171 CLSTVECYNATTNE-WTYIAEMSTR--RSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNA 245 (302)
T ss_dssp ECCCEEEEETTTTE-EEEECCCSSC--CBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred cccEEEEEeCCCCc-EEECCCCccc--cccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccC
Confidence 2458889987642 1111111111 111111222 56777777654 3689999987653322111 11111
Q ss_pred EEEEEcCCCCCEEEEEECCC
Q 007855 562 IGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 562 ~~v~~sp~~~~~l~s~g~DG 581 (587)
..+.+ ++.+++.||.++
T Consensus 246 ~~~~~---~~~i~v~GG~~~ 262 (302)
T 2xn4_A 246 GVCAV---NGLLYVVGGDDG 262 (302)
T ss_dssp EEEEE---TTEEEEECCBCS
T ss_pred eEEEE---CCEEEEECCcCC
Confidence 22222 456777777654
No 317
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.10 E-value=0.16 Score=51.53 Aligned_cols=233 Identities=10% Similarity=0.053 Sum_probs=123.1
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCc-EEEEee----cCCcceEEEEccCCCCCcEEEEEeC----C----C
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQ-VIRTFS----TGKIPYVVKLNPDDDKQNILLAGMS----D----K 406 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~-~i~~~~----~~~~~~~~~~~~~~~~~~~l~sg~~----d----g 406 (587)
-.....|+|.|+|+ |+++..+|.|.+++. .++ .+..+. ....+.-+++.++-.....|+++.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 34568999999997 455566699999973 454 222221 1234566777775222234444433 3 5
Q ss_pred cEEEEeCCCC--c-----E-EEEEcc-CCCCeeEEEEecCCCEEEEEECC-------------CCEEEEECCCCe-----
Q 007855 407 KIVQWDMNTK--E-----I-TQEYDQ-HLGAVNTITFVDNNRRFVTSSDD-------------KSLRVWEFGIPV----- 459 (587)
Q Consensus 407 ~I~iwD~~t~--~-----~-~~~~~~-h~~~I~~i~~sp~~~~l~s~s~D-------------g~I~iwd~~~~~----- 459 (587)
.|..|+.... . . +..+.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~np 185 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNP 185 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSS
T ss_pred EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCC
Confidence 7778877654 1 1 111221 11234679999999877765432 344444443210
Q ss_pred --EEEEeecCCCcceeEEEEeC-CCCEEEEEECCC---eEEEEEcCCce-------------eecccceecccccccceE
Q 007855 460 --VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDN---QILIYSTRERF-------------QLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 460 --~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg---~I~iwd~~~~~-------------~~~~~~~~~~~~~~~~i~ 520 (587)
....+...+ .....++|+| ++.++++-...+ .|.+...-... .......+. + ......
T Consensus 186 f~~~~i~a~G~-rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~-~-~~~ap~ 262 (354)
T 3a9g_A 186 FPNSPIWSYGH-RNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTG-S-ETWAPS 262 (354)
T ss_dssp STTCCEEEECC-SCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT-T-CCCCEE
T ss_pred CCCCcEEEEcc-CCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecC-C-CCcCCc
Confidence 001111122 2356899999 566555433222 23333211100 000111110 0 123456
Q ss_pred EEEEc-------CCCCEEEEEcCCCcEEEEeCCCC-eeE--EEEe-cCCCCEEEEEEcCCCCCEEEEEE
Q 007855 521 QVNFS-------PDGRFVMSGDGEGKCWFWDWKSC-KVF--RTLK-CHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 521 ~l~~s-------pdg~~L~sgs~dG~I~vwd~~t~-~~~--~~l~-~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
.++|. .+|.++++.-..+.|...++... +.. ..+- .....+..+++.| ++.++++..
T Consensus 263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~p-DG~lyv~~~ 330 (354)
T 3a9g_A 263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDD-DGGILISTS 330 (354)
T ss_dssp EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECT-TSCEEEEEC
T ss_pred ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECC-CCcEEEEEe
Confidence 67773 56777777777788999888753 332 2232 2245789999999 566666554
No 318
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=97.02 E-value=0.18 Score=56.55 Aligned_cols=230 Identities=10% Similarity=0.049 Sum_probs=124.0
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec---CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST---GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~---~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
...|.+|.-..+|. |..|..+| |..||-.. ...+.. .....+.++..+.. ..|.+|+.+| +..||..+.
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---~~~~~~~~~~~~~~i~~i~~d~~--g~lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYS---TQQHFTYGENNNTRIYCGVIIDN--TYLYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSC---EEECSCTTSTTSSCEEEEEEETT--TEEEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCc---eEEEEccCCCCCceEEEEEEcCC--CcEEEEeCCC-eEEEeCCCC
Confidence 45688998887775 55566666 55566322 122211 11122333333322 3577777654 789998876
Q ss_pred cEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEee---cCCCcceeEEEEeCCCCEEEEEECCCeE
Q 007855 417 EITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYIS---EPHMHSMPSISLHPNTNWLAAQSLDNQI 493 (587)
Q Consensus 417 ~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~---~~~~~~i~~i~~sp~g~~l~~~s~dg~I 493 (587)
............|.++.. .++ .|..++.+ .|..++..+........ ......|.++....++.+.+ ++.. -|
T Consensus 93 ~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl 167 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYV-GTYN-GL 167 (758)
T ss_dssp EECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEE-EETT-EE
T ss_pred EEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEE-EeCC-CH
Confidence 543211112335777654 344 56666665 68889987665443311 11234578888887776554 5544 57
Q ss_pred EEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCE
Q 007855 494 LIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSK 573 (587)
Q Consensus 494 ~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~ 573 (587)
..|+..+..................|.++....++..|..|+. +-|..++..+++...........|.++.... ++.
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~- 244 (758)
T 3ott_A 168 CRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDG-NGD- 244 (758)
T ss_dssp EEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECT-TCC-
T ss_pred hhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcC-CCC-
Confidence 7888765432111000001111234677877777776666664 4588899877654322111233577777665 443
Q ss_pred EEEEECCCcEEEc
Q 007855 574 VATCGWDGLIKYW 586 (587)
Q Consensus 574 l~s~g~DG~I~iW 586 (587)
|..|+.+| |.++
T Consensus 245 lWigT~~G-l~~~ 256 (758)
T 3ott_A 245 LLAGTDNG-LYVY 256 (758)
T ss_dssp EEEEETTE-EEEE
T ss_pred EEEEeCCc-eeEE
Confidence 44445444 4443
No 319
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.99 E-value=0.11 Score=52.54 Aligned_cols=208 Identities=13% Similarity=0.230 Sum_probs=117.0
Q ss_pred CceeeEEEecCCCeEEEEe------------CCCeEEEEECCC--CcEEE-Eeec------CCcceEEEEccCCCCC-cE
Q 007855 341 KAVRDISFCNDGTKFLTAS------------YDKNIKYWDTET--GQVIR-TFST------GKIPYVVKLNPDDDKQ-NI 398 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s------------~Dg~I~vWd~~t--~~~i~-~~~~------~~~~~~~~~~~~~~~~-~~ 398 (587)
...-+|...++|..+++++ .+|.|.++|..+ ++... .+.. ...+.-+.+..+.+.. .+
T Consensus 50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 3456777777776555552 689999999873 33221 1221 1245566665542222 35
Q ss_pred EEEEeC--CCcEEEEeCCCC----cEEEEEccC-CCCeeEEEEecCCCEEEEEEC-----------------CCCEEEEE
Q 007855 399 LLAGMS--DKKIVQWDMNTK----EITQEYDQH-LGAVNTITFVDNNRRFVTSSD-----------------DKSLRVWE 454 (587)
Q Consensus 399 l~sg~~--dg~I~iwD~~t~----~~~~~~~~h-~~~I~~i~~sp~~~~l~s~s~-----------------Dg~I~iwd 454 (587)
+++-.. +..|.+|++... ..+..+.+. ....+.+.+.++|..+++... .|.|..++
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 555444 457777766542 223344432 346889999999987766541 24455555
Q ss_pred CCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceeecccceecccccccceEEEEEcC-CCCEEE
Q 007855 455 FGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSP-DGRFVM 532 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~L~ 532 (587)
.. .. ..+. ......+.++|+|+++.|+++. ..+.|..|++.....+.....+. ..+..-.+++.+ +|++.+
T Consensus 210 ~~--~~-~~~~-~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~lwv 282 (355)
T 3sre_A 210 PN--DV-RVVA-EGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGDLWV 282 (355)
T ss_dssp TT--CC-EEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCCEEE
T ss_pred CC--eE-EEee-cCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCcEEE
Confidence 43 22 1221 1234568899999998877765 56899999986422222222331 134555688999 598777
Q ss_pred EEcCC-CcEEEEeCC--CCeeEEEEe
Q 007855 533 SGDGE-GKCWFWDWK--SCKVFRTLK 555 (587)
Q Consensus 533 sgs~d-G~I~vwd~~--t~~~~~~l~ 555 (587)
++..+ +.|..|+-. .+..+..++
T Consensus 283 a~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 283 GCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EecCCceEEEEECCCCCCCCEEEEEE
Confidence 55433 344444432 234444443
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.99 E-value=0.15 Score=50.45 Aligned_cols=228 Identities=7% Similarity=0.090 Sum_probs=113.2
Q ss_pred EEEEEeCCCeEEEEecCCCCeeeE-EEcccCCceeeEEEecCCCeEEEEeC----CC-------eEEEEECCCCcEEEEe
Q 007855 311 LILSAGMDTKVKIWDVFNSGKCMR-TYMGHSKAVRDISFCNDGTKFLTASY----DK-------NIKYWDTETGQVIRTF 378 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~~~-~~~~h~~~V~~l~fs~dg~~l~s~s~----Dg-------~I~vWd~~t~~~i~~~ 378 (587)
+++.|+. .+.+||. .+.+-.. .+..........+...++..++.|+. ++ .+.+||..+.+-...-
T Consensus 18 i~~~GG~--~~~~yd~-~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~ 94 (318)
T 2woz_A 18 ILLVNDT--AAVAYDP-MENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLP 94 (318)
T ss_dssp EEEECSS--EEEEEET-TTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECS
T ss_pred hhhcccc--ceEEECC-CCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECC
Confidence 4444443 3788888 4444332 22211122222333446777777773 11 2778898877654332
Q ss_pred ecC--CcceEEEEccCCCCCcEEEEEeCC-------CcEEEEeCCCCcEEEEEccCCCCe-eEEEEecCCCEEEEEEC--
Q 007855 379 STG--KIPYVVKLNPDDDKQNILLAGMSD-------KKIVQWDMNTKEITQEYDQHLGAV-NTITFVDNNRRFVTSSD-- 446 (587)
Q Consensus 379 ~~~--~~~~~~~~~~~~~~~~~l~sg~~d-------g~I~iwD~~t~~~~~~~~~h~~~I-~~i~~sp~~~~l~s~s~-- 446 (587)
... .....+... ++.+++.|+.+ ..+.+||+.+.+-...-....... .+++. .++..++.|+.
T Consensus 95 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~ 169 (318)
T 2woz_A 95 PLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTD 169 (318)
T ss_dssp CBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEES
T ss_pred CCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCC
Confidence 211 112222222 23577777754 357889998876443211111111 12222 46677777764
Q ss_pred ----CCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCceeecccceeccccccc
Q 007855 447 ----DKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRERFQLNKKKRFAGHIVAG 517 (587)
Q Consensus 447 ----Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~ 517 (587)
-..+.+||+.+..-...-..+....-.+++.. ++++++.|+.+ ..+.+||+.+.. ......+... ..
T Consensus 170 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~ 245 (318)
T 2woz_A 170 DKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNK-WEVMTEFPQE--RS 245 (318)
T ss_dssp SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCC-EEECCCCSSC--CB
T ss_pred CCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCe-EEECCCCCCc--cc
Confidence 23589999988764433222222222233333 56666776543 357788876542 2222222111 11
Q ss_pred ceEEEEEcCCCCEEEEEcCC--------------CcEEEEeCCCCeeEE
Q 007855 518 YACQVNFSPDGRFVMSGDGE--------------GKCWFWDWKSCKVFR 552 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~d--------------G~I~vwd~~t~~~~~ 552 (587)
....+. -++++++.|+.+ ..|.+||..+.+-..
T Consensus 246 ~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 246 SISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp SCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred ceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 111122 256777777653 358889988765433
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.86 E-value=0.089 Score=51.70 Aligned_cols=186 Identities=11% Similarity=0.100 Sum_probs=98.3
Q ss_pred CcEEEEEeCC----CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC------CeEEEEECCCCcEEEEe
Q 007855 309 GHLILSAGMD----TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD------KNIKYWDTETGQVIRTF 378 (587)
Q Consensus 309 g~~L~sgs~D----g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D------g~I~vWd~~t~~~i~~~ 378 (587)
+.+++.|+.+ ..+.+||. .+..-...-..........+..-++..++.|+.+ ..+.+||+.+.+-...-
T Consensus 56 ~~lyv~GG~~~~~~~~~~~~d~-~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~ 134 (306)
T 3ii7_A 56 NVVYILGGSQLFPIKRMDCYNV-VKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP 134 (306)
T ss_dssp TEEEEECCBSSSBCCEEEEEET-TTTEEEEEECCSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCCCcceEEEEeC-CCCeEEECCCCCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC
Confidence 6677787755 67888888 4443322211111111111222267777777765 46889999887654432
Q ss_pred ec--CCcceEEEEccCCCCCcEEEEEeC---------CCcEEEEeCCCCcEEEEEccCCCC-eeEEEEecCCCEEEEEEC
Q 007855 379 ST--GKIPYVVKLNPDDDKQNILLAGMS---------DKKIVQWDMNTKEITQEYDQHLGA-VNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 379 ~~--~~~~~~~~~~~~~~~~~~l~sg~~---------dg~I~iwD~~t~~~~~~~~~h~~~-I~~i~~sp~~~~l~s~s~ 446 (587)
.. ......+... ++.+++.|+. -..+.+||+.+.+-...-...... -.+++.. ++++++.|+.
T Consensus 135 ~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~ 209 (306)
T 3ii7_A 135 SMLTQRCSHGMVEA----NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQ 209 (306)
T ss_dssp CCSSCCBSCEEEEE----TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCE
T ss_pred CCcCCcceeEEEEE----CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCC
Confidence 22 2222222222 2356666654 355889999887544332111111 1222222 6677777765
Q ss_pred C-----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECC-----CeEEEEEcCCc
Q 007855 447 D-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLD-----NQILIYSTRER 501 (587)
Q Consensus 447 D-----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d-----g~I~iwd~~~~ 501 (587)
+ ..|.+||+.+..-...-..+....-.+++.. ++.+++.|+.+ ..|.+||+.+.
T Consensus 210 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 210 NGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV-GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp ETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE-TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE-CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 3 4688999887654332222222222223333 56677777643 56788887653
No 322
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.75 E-value=0.068 Score=52.77 Aligned_cols=216 Identities=9% Similarity=0.022 Sum_probs=107.9
Q ss_pred CCCeEEEEeC----CCeEEEEECCCCcEEEEee--cCCcceEEEEccCCCCCcEEEEEeC----C-----CcEEEEeCCC
Q 007855 351 DGTKFLTASY----DKNIKYWDTETGQVIRTFS--TGKIPYVVKLNPDDDKQNILLAGMS----D-----KKIVQWDMNT 415 (587)
Q Consensus 351 dg~~l~s~s~----Dg~I~vWd~~t~~~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~----d-----g~I~iwD~~t 415 (587)
++..++.|+. -..+.++|..+++....-. .......+... ++.+++.|+. + ..+.+||+.+
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~ 99 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV----GGLLYAVGGRNNSPDGNTDSSALDCYNPMT 99 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE----TTEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE----CCEEEEECCCcCCCCCCeecceEEEECCCC
Confidence 4455555553 2468888888776443321 11112222222 2356777665 2 4688999988
Q ss_pred CcEEEEE--ccCCCCeeEEEEecCCCEEEEEECC-----CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE
Q 007855 416 KEITQEY--DQHLGAVNTITFVDNNRRFVTSSDD-----KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 416 ~~~~~~~--~~h~~~I~~i~~sp~~~~l~s~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s 488 (587)
.+....- ....... +++.. ++..++.|+.+ ..+.+||+.+..-...-..+....-.+++.. ++.+++.|+
T Consensus 100 ~~W~~~~~~p~~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG 176 (308)
T 1zgk_A 100 NQWSPCAPMSVPRNRI-GVGVI-DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGG 176 (308)
T ss_dssp TEEEECCCCSSCCBTC-EEEEE-TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECC
T ss_pred CeEeECCCCCcCcccc-EEEEE-CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE-CCEEEEEeC
Confidence 7543321 1111111 22222 66777776643 3688999887654433222222222233333 566677766
Q ss_pred CC-----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCC-----CcEEEEeCCCCeeEEE--Eec
Q 007855 489 LD-----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE-----GKCWFWDWKSCKVFRT--LKC 556 (587)
Q Consensus 489 ~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d-----G~I~vwd~~t~~~~~~--l~~ 556 (587)
.+ ..+.+||+.+.. ......+... ......+.+ ++++++.|+.+ ..+.+||+.+.+-... +..
T Consensus 177 ~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 251 (308)
T 1zgk_A 177 FDGTNRLNSAECYYPERNE-WRMITAMNTI--RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKH 251 (308)
T ss_dssp BCSSCBCCCEEEEETTTTE-EEECCCCSSC--CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSS
T ss_pred CCCCCcCceEEEEeCCCCe-EeeCCCCCCc--cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCC
Confidence 54 468889986542 2111111111 111122223 66777777654 4699999987653321 111
Q ss_pred CCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 557 HEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 557 h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
.......+.+ ++.+++.||.++
T Consensus 252 ~r~~~~~~~~---~~~i~v~GG~~~ 273 (308)
T 1zgk_A 252 RRSALGITVH---QGRIYVLGGYDG 273 (308)
T ss_dssp CCBSCEEEEE---TTEEEEECCBCS
T ss_pred CccceEEEEE---CCEEEEEcCcCC
Confidence 1111122222 456777777553
No 323
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.75 E-value=0.3 Score=49.30 Aligned_cols=233 Identities=10% Similarity=0.126 Sum_probs=119.9
Q ss_pred CCeEEEEEccCCCc-EEEEEeCCCeEEEEecCCCCeeeEEE-------cccCCceeeEEEecC---CCeEEEE-eC----
Q 007855 297 KGVSAIRFFPKYGH-LILSAGMDTKVKIWDVFNSGKCMRTY-------MGHSKAVRDISFCND---GTKFLTA-SY---- 360 (587)
Q Consensus 297 ~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~~~~~~~~-------~~h~~~V~~l~fs~d---g~~l~s~-s~---- 360 (587)
.....|+|.|+ +. +++ +...|.|++++. .+.....+ .........|+|+|+ +.+|+.+ +.
T Consensus 18 ~~P~~i~~~pd-G~~l~V-~e~~G~i~~~~~--~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~ 93 (353)
T 2g8s_A 18 DHPWALAFLPD-NHGMLI-TLRGGELRHWQA--GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDD 93 (353)
T ss_dssp SSEEEEEECST-TCCEEE-EETTTEEEEEET--TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSS
T ss_pred CCcEEEEEcCC-CCEEEE-EeCCceEEEEeC--CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCC
Confidence 35789999999 77 554 556799999985 33321111 122345789999995 4445444 22
Q ss_pred ---CCeEEEEECCCC--c--EEEE----ee----cCCcceEEEEccCCCCCcEEEEEeC-------------CCcEEEEe
Q 007855 361 ---DKNIKYWDTETG--Q--VIRT----FS----TGKIPYVVKLNPDDDKQNILLAGMS-------------DKKIVQWD 412 (587)
Q Consensus 361 ---Dg~I~vWd~~t~--~--~i~~----~~----~~~~~~~~~~~~~~~~~~~l~sg~~-------------dg~I~iwD 412 (587)
...|..|++..+ . .... +. ..+....+.|.+++ .++++.+. .|.|.-++
T Consensus 94 g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG---~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~ 170 (353)
T 2g8s_A 94 GKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG---YLFIALGENNQRPTAQDLDKLQGKLVRLT 170 (353)
T ss_dssp SCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS---EEEEEECCTTCGGGGGCTTSCTTEEEEEE
T ss_pred CCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC---cEEEEECCCCCCCccCCCCCCCeEEEEEC
Confidence 235666666533 1 1111 11 12334567777754 34444322 24677777
Q ss_pred CCCCc------------EEEEEccCCCCeeEEEEecCCCEEEEEECCC--CEEEEECCCCe-------------------
Q 007855 413 MNTKE------------ITQEYDQHLGAVNTITFVDNNRRFVTSSDDK--SLRVWEFGIPV------------------- 459 (587)
Q Consensus 413 ~~t~~------------~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg--~I~iwd~~~~~------------------- 459 (587)
....- ....+..-......++|.|....|+++.... .=.|.-+..+.
T Consensus 171 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 171 DQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp TTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 65320 1111111223467899999433444443221 11221111110
Q ss_pred ------------EEEEeecCCCcceeEEEEeC-------CCCEEEEEECCCeEEEEEcCCceeecccceecccccccceE
Q 007855 460 ------------VIKYISEPHMHSMPSISLHP-------NTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYAC 520 (587)
Q Consensus 460 ------------~~~~~~~~~~~~i~~i~~sp-------~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~ 520 (587)
++..+ .+......+.+.. ++.++++....+.|...++..+........+.. ....+.
T Consensus 251 ~~~~~~~~~~~~P~~~~--~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~rp~ 326 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYW--KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTD--RGQRIR 326 (353)
T ss_dssp TCCBSSCTTSCCCSEEE--SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGG--GCCCEE
T ss_pred cccCCCCCCccCCeEEe--CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccC--CCCcee
Confidence 00001 1123456677763 466777766778888888765432222111111 124677
Q ss_pred EEEEcCCCCEEEEEc-CCCcE
Q 007855 521 QVNFSPDGRFVMSGD-GEGKC 540 (587)
Q Consensus 521 ~l~~spdg~~L~sgs-~dG~I 540 (587)
.+++.|||.++++.. .+|.|
T Consensus 327 ~v~~~pdG~lyv~td~~~g~I 347 (353)
T 2g8s_A 327 DVRTGPDGYLYVLTDESSGEL 347 (353)
T ss_dssp EEEECTTSCEEEEECSTTEEE
T ss_pred EEEECCCCcEEEEEeCCCCEE
Confidence 899999998666543 34544
No 324
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.61 E-value=0.15 Score=50.31 Aligned_cols=211 Identities=10% Similarity=0.009 Sum_probs=104.5
Q ss_pred EEEEeCCCeEEEEECCCCcEEEEeecC--CcceEEEEccCCCCCcEEEEEeC-----C------CcEEEEeCCCCcEEEE
Q 007855 355 FLTASYDKNIKYWDTETGQVIRTFSTG--KIPYVVKLNPDDDKQNILLAGMS-----D------KKIVQWDMNTKEITQE 421 (587)
Q Consensus 355 l~s~s~Dg~I~vWd~~t~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~sg~~-----d------g~I~iwD~~t~~~~~~ 421 (587)
++.|+ ..+.+||..+++-.. .... ......+.... ++.+++.|+. . ..+.+||+.+.+-...
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~ 82 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC-ASLSSQVPKNHVSLVTK--ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGM 82 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE-EECCCCSCSSEEEEECT--TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEEC
T ss_pred EEEcC--CceEEECCCCCeEec-CCCCCCCCccceEEEEE--CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEEC
Confidence 44444 579999999887543 2221 11222222222 2357777773 1 1278899988764322
Q ss_pred EccCCCCe-eEEEEecCCCEEEEEECC--------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC-C-
Q 007855 422 YDQHLGAV-NTITFVDNNRRFVTSSDD--------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL-D- 490 (587)
Q Consensus 422 ~~~h~~~I-~~i~~sp~~~~l~s~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~-d- 490 (587)
-....... .+++.. ++..++.|+.+ ..+.+||..+..-...-..+....-.+++. -++++++.|+. +
T Consensus 83 ~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~ 160 (315)
T 4asc_A 83 PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSD 160 (315)
T ss_dssp CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTT
T ss_pred CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCC
Confidence 11111111 122222 56677777632 358999998775433222222222223333 35667777765 2
Q ss_pred ----CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC-----cEEEEeCCCCeeEEEEec--CCC
Q 007855 491 ----NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG-----KCWFWDWKSCKVFRTLKC--HEG 559 (587)
Q Consensus 491 ----g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG-----~I~vwd~~t~~~~~~l~~--h~~ 559 (587)
+.+.+||+.+.. .......... ......+.+ ++++++.|+.++ .+.+||..+.+-...-.. ...
T Consensus 161 ~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~ 235 (315)
T 4asc_A 161 RKCLNKMCVYDPKKFE-WKELAPMQTA--RSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERS 235 (315)
T ss_dssp SCBCCCEEEEETTTTE-EEECCCCSSC--CBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCB
T ss_pred CcccceEEEEeCCCCe-EEECCCCCCc--hhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccc
Confidence 468899987642 2112211111 111111222 667777777554 488899887643322111 111
Q ss_pred CEEEEEEcCCCCCEEEEEECC
Q 007855 560 VCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 560 ~V~~v~~sp~~~~~l~s~g~D 580 (587)
....+.+ ++.+++.||.+
T Consensus 236 ~~~~~~~---~~~l~v~GG~~ 253 (315)
T 4asc_A 236 SLSLVSL---VGTLYAIGGFA 253 (315)
T ss_dssp SCEEEEE---TTEEEEEEEEE
T ss_pred ceeEEEE---CCEEEEECCcc
Confidence 1222222 45677777764
No 325
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.49 E-value=0.04 Score=55.43 Aligned_cols=193 Identities=13% Similarity=0.098 Sum_probs=106.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEEccc-CCceeeEEEe--c-CCCeEEEE-eCCCeEEEEECCCCcEEEEeecCCc
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-SKAVRDISFC--N-DGTKFLTA-SYDKNIKYWDTETGQVIRTFSTGKI 383 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-~~~V~~l~fs--~-dg~~l~s~-s~Dg~I~vWd~~t~~~i~~~~~~~~ 383 (587)
+.+++.++.||.|.-.|. .+|+.+..+... ..++....-. + ++..++.. +.||.|..++..+|.....+.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~-~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~l 88 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDR-RNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQL 88 (339)
T ss_dssp EEEEEEEETTSCEEEEET-TTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHH
T ss_pred CCEEEEEeCCCeEEEEEC-CCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccc
Confidence 357889999999999998 789999888654 1222211100 1 22333333 5899999999999876665543321
Q ss_pred ----ceEEEEccCC------CCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCC--CC-----eeEEEEe-----cCCCEE
Q 007855 384 ----PYVVKLNPDD------DKQNILLAGMSDKKIVQWDMNTKEITQEYDQHL--GA-----VNTITFV-----DNNRRF 441 (587)
Q Consensus 384 ----~~~~~~~~~~------~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~--~~-----I~~i~~s-----p~~~~l 441 (587)
+....-.|-- .....+++|+.+|.+...|+.+|+.+..+.... +. ..|.... ..+..+
T Consensus 89 v~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v 168 (339)
T 2be1_A 89 VSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMI 168 (339)
T ss_dssp HTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEE
T ss_pred eeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeE
Confidence 1211111111 023578999999999999999999999886432 10 1111111 123456
Q ss_pred EEEECCCCEEEEECCCCeE----EEEeecCCCc-ce-eEEEEeCCCCEEEEEECCCeEEEEEcCCceee
Q 007855 442 VTSSDDKSLRVWEFGIPVV----IKYISEPHMH-SM-PSISLHPNTNWLAAQSLDNQILIYSTRERFQL 504 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~~~~----~~~~~~~~~~-~i-~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~ 504 (587)
+.+..+..|.+.+ +++.. .......... .+ .+...+.++.+ ++++.||.|..+|..++..+
T Consensus 169 ~ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~ 235 (339)
T 2be1_A 169 VIGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIAR 235 (339)
T ss_dssp EEEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEE
T ss_pred EEecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEE
Confidence 6666666555554 22220 0000000000 00 00001123555 45788999999998776544
No 326
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=96.35 E-value=0.94 Score=44.91 Aligned_cols=195 Identities=13% Similarity=0.203 Sum_probs=121.5
Q ss_pred EccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC-CcEEEEeecCC
Q 007855 304 FFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTGK 382 (587)
Q Consensus 304 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~~ 382 (587)
.+|. .+.||.-. ..++.|+|+ .....+..+.-. ..|.--.|-.+. .|+-.+ +..|.-|+++. ..+.+.|..+.
T Consensus 74 MnP~-~~ViALra-g~~LQiFnl-etK~klks~~~~-e~VvfWkWis~~-~L~lVT-~taVyHWs~~~~s~P~kvFdR~~ 147 (365)
T 2xzh_A 74 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 147 (365)
T ss_dssp ECSS-SSEEEEEE-TTEEEEEET-TTTEEEEEEECS-SCEEEEEECSSS-EEEEEE-SSEEEEEESSTTCCCEEEEECCG
T ss_pred eCCC-ccEEEEec-CCeEEEech-HHhhhhcceecC-CccEEEEecCCC-eEEEEc-CCcEEEEcccCCCCCceeeecch
Confidence 4676 56666554 688999999 677777666543 467666676443 454444 36899999974 35666665432
Q ss_pred ---cceEEEEccCCCCCcEEEEEe------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC---CCEEEEEEC---C
Q 007855 383 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN---NRRFVTSSD---D 447 (587)
Q Consensus 383 ---~~~~~~~~~~~~~~~~l~sg~------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~---~~~l~s~s~---D 447 (587)
...++.+..+.+..-++++|- -.|.+.+|....+ ..+.+++|...-..+.+..+ ...|+.+.. .
T Consensus 148 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~g 226 (365)
T 2xzh_A 148 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 226 (365)
T ss_dssp GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred hcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCCCCceEEEEEEecCCC
Confidence 234566666666555666664 2377888887654 45667777554433333211 112333322 2
Q ss_pred CCEEEEECCCC--------eEEEEeecC---CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 448 KSLRVWEFGIP--------VVIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 448 g~I~iwd~~~~--------~~~~~~~~~---~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+.+.|.++... +....+..+ ...-..++.+++.-..+..-+.-|.|++||+.++.++.
T Consensus 227 ~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 227 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred cEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 57889888543 111122112 23345678888888899999999999999999987663
No 327
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=96.24 E-value=2.1 Score=47.83 Aligned_cols=271 Identities=14% Similarity=0.099 Sum_probs=147.5
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCC--eeeEEEcc-------cCCceeeEEEecCCCeEEEEeCCCeEEEE
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSG--KCMRTYMG-------HSKAVRDISFCNDGTKFLTASYDKNIKYW 367 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~--~~~~~~~~-------h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW 367 (587)
..|.+|.-..+ |.+.+ |+.+| +..++. ..+ .....+.. ....|.++.-..+|++. .|+ ++-|.++
T Consensus 324 ~~v~~i~~D~~-g~lWi-Gt~~G-l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt-~~GL~~~ 397 (758)
T 3ott_A 324 NQFYSLFRDSK-GFYWF-GGANG-LIRFTD-PAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLW-IAT-DGSINRY 397 (758)
T ss_dssp CBEEEEEECTT-CCEEE-EETTE-EEEESC-TTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEE-EEE-TTEEEEE
T ss_pred ceEEEEEEcCC-CCEEE-eeCCc-ceeecc-cccccceeEEeccCCcCCCCCCCceEEEEECCCCCEE-EEe-CCcHhhc
Confidence 46888887776 55444 44555 555554 221 12222221 12458888887777644 455 4579999
Q ss_pred ECCCCcEEEEee-cC----CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC------CcEE--EEEcc----CCCCee
Q 007855 368 DTETGQVIRTFS-TG----KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT------KEIT--QEYDQ----HLGAVN 430 (587)
Q Consensus 368 d~~t~~~i~~~~-~~----~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t------~~~~--~~~~~----h~~~I~ 430 (587)
|..+++...... .. ....+.++..+.. ..|.+|+..+-|.++|..+ .... ..+.. ....|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~--g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 475 (758)
T 3ott_A 398 DYATRQFIHYNIVDNTGTYNTNWTYYIFEDTA--GQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFIN 475 (758)
T ss_dssp ETTTTEEEEEEEECCC--CBSSSEEEEEECTT--SEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEE
T ss_pred CcCCCcEEEeecCCCcCCCCCceEEEEEEcCC--CCEEEEECCCceEEEccccccccCCcceecccccccccccccceee
Confidence 998876543221 11 1122444444332 3577788777788888643 1111 12221 123588
Q ss_pred EEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCC--CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccc
Q 007855 431 TITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH--MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKK 508 (587)
Q Consensus 431 ~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~--~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~ 508 (587)
+|...+++...+.++..+-|..+|..+........... ...+.++....+|.+.+ |+.. -|..|+..+.... ...
T Consensus 476 ~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~-~~~ 552 (758)
T 3ott_A 476 QIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWV-GFHG-GVMRINPKDESQQ-SIS 552 (758)
T ss_dssp EEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEE-EETT-EEEEECC--CCCC-BCC
T ss_pred eEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEE-EecC-ceEEEecCCCceE-Eec
Confidence 89888888866644445668899988776554322111 24577888777776554 4554 4888886544221 111
Q ss_pred eecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 509 RFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 509 ~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
..+ .....+.++... +| .|..++..| |..+|..+.+... +......+..+.+.. ....|+.|+.+|.+.+
T Consensus 553 -~~g-l~~~~i~~i~~~-~g-~lWi~t~~G-l~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~G~l~fG~~~Gl~~f 622 (758)
T 3ott_A 553 -FGS-FSNNEILSMTCV-KN-SIWVSTTNG-LWIIDRKTMDARQ-QNMTNKRFTSLLFDP-KEDCVYLGGADGFGIS 622 (758)
T ss_dssp -CCC----CCEEEEEEE-TT-EEEEEESSC-EEEEETTTCCEEE-C--CCCCCSEEEEET-TTTEEEEECBSEEEEE
T ss_pred -ccC-CCccceEEEEEC-CC-CEEEECCCC-eEEEcCCCceeEE-ecCCCCceeeeEEEC-CCCcEEEecCCceEEE
Confidence 111 112446666653 55 555666665 7778887765432 211222333444443 2346777788886654
No 328
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.22 E-value=0.15 Score=51.38 Aligned_cols=220 Identities=13% Similarity=0.136 Sum_probs=104.6
Q ss_pred CCCeEEEEeCC-CeEEEEECCC--CcEEEE--ee-cCCcceEEEEccCCCCCcEEEEEeC-C---------CcEEEEeCC
Q 007855 351 DGTKFLTASYD-KNIKYWDTET--GQVIRT--FS-TGKIPYVVKLNPDDDKQNILLAGMS-D---------KKIVQWDMN 414 (587)
Q Consensus 351 dg~~l~s~s~D-g~I~vWd~~t--~~~i~~--~~-~~~~~~~~~~~~~~~~~~~l~sg~~-d---------g~I~iwD~~ 414 (587)
++..++.|+.+ ..+.++|+.+ .+-... +. .......+... ++.+++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI----DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE----TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE----CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence 55555655543 4688888864 332222 12 11222222222 2356777765 2 468999998
Q ss_pred CCcEEEEEccC-CCCeeEEEEecCCCEEEEEECC---------------------------------------CCEEEEE
Q 007855 415 TKEITQEYDQH-LGAVNTITFVDNNRRFVTSSDD---------------------------------------KSLRVWE 454 (587)
Q Consensus 415 t~~~~~~~~~h-~~~I~~i~~sp~~~~l~s~s~D---------------------------------------g~I~iwd 454 (587)
+.+-...-... .......+...++++++.|+.+ ..+.+||
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred CCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 87543321111 1111122222567788888764 4789999
Q ss_pred CCCCeEEEEeecCCCcce-eEEEEeCCCCEEEEEEC------CCeEEEEEc--CCceeecccceecccccccceEEEEEc
Q 007855 455 FGIPVVIKYISEPHMHSM-PSISLHPNTNWLAAQSL------DNQILIYST--RERFQLNKKKRFAGHIVAGYACQVNFS 525 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~i-~~i~~sp~g~~l~~~s~------dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~i~~l~~s 525 (587)
..+..-...-..+..... .+++.. ++.+++.|+. ...+.+|++ .+. .......+... .......+..
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~-~W~~~~~~~~~--~~~~~~~~~~ 250 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNL-KWNKLAPVSSP--DGVAGGFAGI 250 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---C-EEEECCCSSTT--TCCBSCEEEE
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCC-cEEecCCCCCC--cccccceEEE
Confidence 887654433222222122 333333 5556666543 345777876 322 22222211111 0111111222
Q ss_pred CCCCEEEEEcCC----------------------CcEEEEeCCCCe--eEEEEecCCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 526 PDGRFVMSGDGE----------------------GKCWFWDWKSCK--VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 526 pdg~~L~sgs~d----------------------G~I~vwd~~t~~--~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
.++++++.|+.+ ..+.+||+.+.+ .+..+........++.+ ++.+++.||.++
T Consensus 251 ~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~ 327 (357)
T 2uvk_A 251 SNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPW---NNSLLIIGGETA 327 (357)
T ss_dssp ETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEE---TTEEEEEEEECG
T ss_pred ECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEe---CCEEEEEeeeCC
Confidence 356677777632 247889987653 33333322222223333 566888888654
No 329
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.14 E-value=0.35 Score=49.69 Aligned_cols=145 Identities=12% Similarity=0.093 Sum_probs=92.4
Q ss_pred cCCCEEEEEECCCCEEEEECCCCeEEEEeecCC---CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc------
Q 007855 436 DNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK------ 506 (587)
Q Consensus 436 p~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~---~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~------ 506 (587)
.++..++++- ++.||.-++......+.+..+. ...+..+..+|+|.+||..+ +..|.|..+..+.....
T Consensus 30 ~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~ 107 (452)
T 3pbp_A 30 QNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQD 107 (452)
T ss_dssp TTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHH
T ss_pred cCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCccccccc
Confidence 3555555544 3677777776444444444442 33688899999999999886 56788888763221110
Q ss_pred -c--ceecc----cccccceEEEEEcCC---CCEEEEEcCCCcEEEEeCCCC--eeEEEEe---------cCCCCEEEEE
Q 007855 507 -K--KRFAG----HIVAGYACQVNFSPD---GRFVMSGDGEGKCWFWDWKSC--KVFRTLK---------CHEGVCIGCE 565 (587)
Q Consensus 507 -~--~~~~~----~~~~~~i~~l~~spd---g~~L~sgs~dG~I~vwd~~t~--~~~~~l~---------~h~~~V~~v~ 565 (587)
. +.+.- ......|..+.|+|- +..|++-..|+.|++||+... ++. .++ .....|.+++
T Consensus 108 ~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~ 186 (452)
T 3pbp_A 108 AFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLE 186 (452)
T ss_dssp TTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEE
T ss_pred ccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEE
Confidence 0 11111 112466899999994 568999999999999999752 122 222 2335788999
Q ss_pred EcCCCCCEEEEEE--CCCcEE
Q 007855 566 WHPLEQSKVATCG--WDGLIK 584 (587)
Q Consensus 566 ~sp~~~~~l~s~g--~DG~I~ 584 (587)
|.+ ++-.|+... ..|-|+
T Consensus 187 Fg~-~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 187 FSK-DGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp ECT-TSSCEEEEECTTSCEEE
T ss_pred EcC-CCcEEEEEecCCCCCEE
Confidence 998 666666644 677765
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.08 E-value=1.4 Score=44.35 Aligned_cols=236 Identities=10% Similarity=0.040 Sum_probs=120.8
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEee-------c-CCcceEEEEccCCC-CCcEEEEEeC-------
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFS-------T-GKIPYVVKLNPDDD-KQNILLAGMS------- 404 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~-------~-~~~~~~~~~~~~~~-~~~~l~sg~~------- 404 (587)
.....|+|.|+|++|+++...|.|++++.. +.....+. . ......+++.|+-. ++.+.++-..
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 456899999999845555678999999853 33211111 1 12234567776411 2234444332
Q ss_pred CCcEEEEeCCCC--cE--EEE-Ecc------CCCCeeEEEEecCCCEEEEEECC-------------CCEEEEECCCCe-
Q 007855 405 DKKIVQWDMNTK--EI--TQE-YDQ------HLGAVNTITFVDNNRRFVTSSDD-------------KSLRVWEFGIPV- 459 (587)
Q Consensus 405 dg~I~iwD~~t~--~~--~~~-~~~------h~~~I~~i~~sp~~~~l~s~s~D-------------g~I~iwd~~~~~- 459 (587)
...|..|++... .+ ... +.. .......|.|.|+|.++++.+.. |.|.-++.....
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p 176 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP 176 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence 235666766432 11 111 111 11124679999999666665442 356666654320
Q ss_pred -----------EEEEeecCCCcceeEEEEeC-CCCEEEEEECCC--eEEEEEcCCceee---------------------
Q 007855 460 -----------VIKYISEPHMHSMPSISLHP-NTNWLAAQSLDN--QILIYSTRERFQL--------------------- 504 (587)
Q Consensus 460 -----------~~~~~~~~~~~~i~~i~~sp-~g~~l~~~s~dg--~I~iwd~~~~~~~--------------------- 504 (587)
....+...+ .....++|+| ++.+ .++.... .=.|.-+..+...
T Consensus 177 ~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l-~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~ 254 (353)
T 2g8s_A 177 DDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNAL-WLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG 254 (353)
T ss_dssp TTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEE-EEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred CCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCE-EEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence 011111122 3467899999 5544 4433221 1122211111100
Q ss_pred -------cccceecccccccceEEEEEcC-------CCCEEEEEcCCCcEEEEeCCCCeeEEEEe---cCCCCEEEEEEc
Q 007855 505 -------NKKKRFAGHIVAGYACQVNFSP-------DGRFVMSGDGEGKCWFWDWKSCKVFRTLK---CHEGVCIGCEWH 567 (587)
Q Consensus 505 -------~~~~~~~~~~~~~~i~~l~~sp-------dg~~L~sgs~dG~I~vwd~~t~~~~~~l~---~h~~~V~~v~~s 567 (587)
.....+.. ....+.+.|.. +|.++++.-..+.|...++..++.+.... .....+..+++.
T Consensus 255 ~~~~~~~~P~~~~~~---~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 255 EIVAGTEQPVFYWKD---SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SSCTTSCCCSEEESS---CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCCccCCeEEeCC---CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 00000111 12345677753 57777777778888888887765443322 223578999999
Q ss_pred CCCCCEEEEEE-CCCcE
Q 007855 568 PLEQSKVATCG-WDGLI 583 (587)
Q Consensus 568 p~~~~~l~s~g-~DG~I 583 (587)
| ++.++++.. .+|.|
T Consensus 332 p-dG~lyv~td~~~g~I 347 (353)
T 2g8s_A 332 P-DGYLYVLTDESSGEL 347 (353)
T ss_dssp T-TSCEEEEECSTTEEE
T ss_pred C-CCcEEEEEeCCCCEE
Confidence 9 566555433 45655
No 331
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.05 E-value=0.13 Score=52.03 Aligned_cols=156 Identities=11% Similarity=0.068 Sum_probs=87.2
Q ss_pred CeeEEEEecCCCEEEEE------------ECCCCEEEEECCCC--eEEE-Eeec----CCCcceeEEEEeC--CCC-EEE
Q 007855 428 AVNTITFVDNNRRFVTS------------SDDKSLRVWEFGIP--VVIK-YISE----PHMHSMPSISLHP--NTN-WLA 485 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~------------s~Dg~I~iwd~~~~--~~~~-~~~~----~~~~~i~~i~~sp--~g~-~l~ 485 (587)
..-.|.+.++|..++++ ..+|.|.++|+... .... .+.. ........+.+.+ ++. +|+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 45566677776555444 26899999998732 2221 1111 1123456677655 343 444
Q ss_pred EE-EC--CCeEEEEEcCCc-eeecccceecccccccceEEEEEcCCCCEEEEEc-----------------CCCcEEEEe
Q 007855 486 AQ-SL--DNQILIYSTRER-FQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-----------------GEGKCWFWD 544 (587)
Q Consensus 486 ~~-s~--dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-----------------~dG~I~vwd 544 (587)
++ .. +..|.+|++... ........+.+.. -....++.+.++|.+.++.. ..|.|+.+|
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~-~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d 209 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 209 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-CSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EEECCCCCCeEEEEEEECCCCEEEEEeccccCC-CCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence 44 33 467888876542 2223333444432 34577899999999888765 135566666
Q ss_pred CCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEcC
Q 007855 545 WKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 545 ~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iWD 587 (587)
. ++.. .+...-...+.++|+|++..+.++-+..+.|..||
T Consensus 210 ~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~ 249 (355)
T 3sre_A 210 P--NDVR-VVAEGFDFANGINISPDGKYVYIAELLAHKIHVYE 249 (355)
T ss_dssp T--TCCE-EEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEE
T ss_pred C--CeEE-EeecCCcccCcceECCCCCEEEEEeCCCCeEEEEE
Confidence 5 3322 22222335689999994444444445567777664
No 332
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.04 E-value=0.31 Score=48.94 Aligned_cols=234 Identities=11% Similarity=0.112 Sum_probs=111.9
Q ss_pred CcEEEEEeC-CCeEEEEecCCCCeeeEEEcccC--Cce-eeEEEecCCCeEEEEeC-C---------CeEEEEECCCCcE
Q 007855 309 GHLILSAGM-DTKVKIWDVFNSGKCMRTYMGHS--KAV-RDISFCNDGTKFLTASY-D---------KNIKYWDTETGQV 374 (587)
Q Consensus 309 g~~L~sgs~-Dg~I~iWd~~~~~~~~~~~~~h~--~~V-~~l~fs~dg~~l~s~s~-D---------g~I~vWd~~t~~~ 374 (587)
+.+++.|+. ...+.++|+.........+..-. ... .+++. -++..++.|+. + ..+.+||+.+.+-
T Consensus 20 ~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W 98 (357)
T 2uvk_A 20 DTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF-IDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSW 98 (357)
T ss_dssp TEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEE-ETTEEEEECCEEECTTSCEEECCCEEEEETTTTEE
T ss_pred CEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEE-ECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcE
Confidence 667777664 35688888732122222222111 111 12222 25667777765 2 4688999988765
Q ss_pred EEEeecC---CcceEEEEccCCCCCcEEEEEeCC---------------------------------------CcEEEEe
Q 007855 375 IRTFSTG---KIPYVVKLNPDDDKQNILLAGMSD---------------------------------------KKIVQWD 412 (587)
Q Consensus 375 i~~~~~~---~~~~~~~~~~~~~~~~~l~sg~~d---------------------------------------g~I~iwD 412 (587)
...-... .....+.. . ++.+++.|+.+ ..+.+||
T Consensus 99 ~~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd 174 (357)
T 2uvk_A 99 VKLMSHAPMGMAGHVTFV-H---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD 174 (357)
T ss_dssp EECSCCCSSCCSSEEEEE-E---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred EECCCCCCcccccceEEE-E---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence 4432222 11222222 2 23677888754 5789999
Q ss_pred CCCCcEEEEEccCC-CCe-eEEEEecCCCEEEEEEC------CCCEEEEEC--CCCeEEEEeec-CCCcc-eeEEEEeCC
Q 007855 413 MNTKEITQEYDQHL-GAV-NTITFVDNNRRFVTSSD------DKSLRVWEF--GIPVVIKYISE-PHMHS-MPSISLHPN 480 (587)
Q Consensus 413 ~~t~~~~~~~~~h~-~~I-~~i~~sp~~~~l~s~s~------Dg~I~iwd~--~~~~~~~~~~~-~~~~~-i~~i~~sp~ 480 (587)
+.+.+-...-.... ... .+++.. ++++++.|+. ...+.+||+ .+..-. .+.. +.... ....+...+
T Consensus 175 ~~~~~W~~~~~~p~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~-~~~~~~~~~~~~~~~~~~~~ 252 (357)
T 2uvk_A 175 PSTQQWSYAGESPWYGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN-KLAPVSSPDGVAGGFAGISN 252 (357)
T ss_dssp TTTTEEEEEEECSSCCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEE-ECCCSSTTTCCBSCEEEEET
T ss_pred CCCCcEEECCCCCCCCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEE-ecCCCCCCcccccceEEEEC
Confidence 98875443321111 111 233333 5667777653 345777887 333322 2211 11111 111122335
Q ss_pred CCEEEEEECC----------------------CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcCCC
Q 007855 481 TNWLAAQSLD----------------------NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEG 538 (587)
Q Consensus 481 g~~l~~~s~d----------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG 538 (587)
+.+++.|+.+ ..+.+||+.+.. ......+... ..... ++.-++++++.|+.++
T Consensus 253 ~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~--r~~~~--~~~~~~~i~v~GG~~~ 327 (357)
T 2uvk_A 253 DSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQG--RAYGV--SLPWNNSLLIIGGETA 327 (357)
T ss_dssp TEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSC--CBSSE--EEEETTEEEEEEEECG
T ss_pred CEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCC--cccce--eEEeCCEEEEEeeeCC
Confidence 6666666532 257788886532 2222222211 11111 2223677777787543
Q ss_pred ------cEEEEeCCCCeeEEEE
Q 007855 539 ------KCWFWDWKSCKVFRTL 554 (587)
Q Consensus 539 ------~I~vwd~~t~~~~~~l 554 (587)
.|.++++++.+.+...
T Consensus 328 ~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 328 GGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCCEeeeEEEEEEcCcEeEeee
Confidence 3666788877665543
No 333
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=95.97 E-value=1.8 Score=44.65 Aligned_cols=196 Identities=13% Similarity=0.192 Sum_probs=123.9
Q ss_pred EEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCC-CcEEEEeecC
Q 007855 303 RFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQVIRTFSTG 381 (587)
Q Consensus 303 ~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t-~~~i~~~~~~ 381 (587)
-.+|. .+.||.=. ..++.|+|+ .....+..+.-. ..|.--.|-.+. .|+..+ +..|.-|+++. ..+.+.|..+
T Consensus 72 IMnP~-~~iiALra-g~~lQiFnl-e~K~klks~~~~-e~VvfWkWis~~-~l~lVT-~taVyHWsi~~~s~P~kvFdR~ 145 (494)
T 1bpo_A 72 IMNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (494)
T ss_dssp EECSS-SSCEEEEE-TTEEEEEET-TTTEEEEEEECS-SCCCEEEEEETT-EEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred eeCCC-CcEEEEec-CCeEEEEch-HHhhhhcceecC-CCceEEEecCCC-eEEEEc-CCeeEEecccCCCCchhheecc
Confidence 35666 55555544 689999999 677777666543 456666676543 444443 46899999974 3566666543
Q ss_pred C---cceEEEEccCCCCCcEEEEEe------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCC---CEEEEEECC--
Q 007855 382 K---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNN---RRFVTSSDD-- 447 (587)
Q Consensus 382 ~---~~~~~~~~~~~~~~~~l~sg~------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~---~~l~s~s~D-- 447 (587)
. ...++.+..+.+..-++++|- -.|.+.+|....+ ..+.+.+|...-..+.+..+. ..|+.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~ 224 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA 224 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence 2 234566666666555666654 2477888987654 456677776555444433111 234444332
Q ss_pred -CCEEEEECCCC--------eEEEEeecCC---CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 448 -KSLRVWEFGIP--------VVIKYISEPH---MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 448 -g~I~iwd~~~~--------~~~~~~~~~~---~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+.+.|.++... +....+..+. ..-..++.+++.-..+..-+.-|.|++||+.++..+.
T Consensus 225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence 68999998543 1122222222 3345678889888899999999999999999987663
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=95.89 E-value=0.24 Score=50.98 Aligned_cols=137 Identities=14% Similarity=0.143 Sum_probs=86.9
Q ss_pred CcEEEEeCCCCcEEEEEccC----CCCeeEEEEecCCCEEEEEECCCCEEEEECCCC------------eEEEEeecC--
Q 007855 406 KKIVQWDMNTKEITQEYDQH----LGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIP------------VVIKYISEP-- 467 (587)
Q Consensus 406 g~I~iwD~~t~~~~~~~~~h----~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~------------~~~~~~~~~-- 467 (587)
+.||.-++.....-+.+... -..|..+..+|+|++|+..+. ..|.|..+..+ ...+.+...
T Consensus 41 n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~ 119 (452)
T 3pbp_A 41 NIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEE 119 (452)
T ss_dssp TEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGC
T ss_pred CEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccceeEEEcCCc
Confidence 56666666533333333322 236888999999999988865 57888887522 112222221
Q ss_pred ---CCcceeEEEEeCC---CCEEEEEECCCeEEEEEcCCceeecc-cc----eecccccccceEEEEEcCCCCEEEE--E
Q 007855 468 ---HMHSMPSISLHPN---TNWLAAQSLDNQILIYSTRERFQLNK-KK----RFAGHIVAGYACQVNFSPDGRFVMS--G 534 (587)
Q Consensus 468 ---~~~~i~~i~~sp~---g~~l~~~s~dg~I~iwd~~~~~~~~~-~~----~~~~~~~~~~i~~l~~spdg~~L~s--g 534 (587)
...+|..+.|||- +..|++-..|+.|++||+........ +. .+........+.+++|..++-.|.+ .
T Consensus 120 ~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~ 199 (452)
T 3pbp_A 120 EVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNT 199 (452)
T ss_dssp C--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEEC
T ss_pred ccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEec
Confidence 2467999999994 56899999999999999975321111 11 1111111145788999998876766 4
Q ss_pred cCCCcEEEE
Q 007855 535 DGEGKCWFW 543 (587)
Q Consensus 535 s~dG~I~vw 543 (587)
+..|.|+-.
T Consensus 200 t~~GDIYAl 208 (452)
T 3pbp_A 200 TEGGDIFAF 208 (452)
T ss_dssp TTSCEEEEE
T ss_pred CCCCCEEEE
Confidence 478888654
No 335
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.81 E-value=0.61 Score=48.91 Aligned_cols=110 Identities=11% Similarity=0.126 Sum_probs=62.1
Q ss_pred CCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEE--EEeecC-----CCcceeEEEEeCC---CCEEEEEEC-----
Q 007855 425 HLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVI--KYISEP-----HMHSMPSISLHPN---TNWLAAQSL----- 489 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~~~-----~~~~i~~i~~sp~---g~~l~~~s~----- 489 (587)
.......|+|.|+|+++++-...+.|++++...+... ..+... ....+..|+|+|+ +.+|.++..
T Consensus 25 ~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~ 104 (454)
T 1cru_A 25 NLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (454)
T ss_dssp CCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccC
Confidence 3456779999999986666544446888876544332 222211 2345679999995 555555442
Q ss_pred --------CCeEEEEEcCCce-ee---c-ccceecccccccceEEEEEcCCCCEEEEEc
Q 007855 490 --------DNQILIYSTRERF-QL---N-KKKRFAGHIVAGYACQVNFSPDGRFVMSGD 535 (587)
Q Consensus 490 --------dg~I~iwd~~~~~-~~---~-~~~~~~~~~~~~~i~~l~~spdg~~L~sgs 535 (587)
...|..|+..... .+ . .+..+... .......|+|.|||.+.++.+
T Consensus 105 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSCEEEEEC
T ss_pred CCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCeEEEEEC
Confidence 2356666653210 11 0 11111111 123456799999998776644
No 336
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.68 E-value=2.7 Score=44.61 Aligned_cols=245 Identities=12% Similarity=0.109 Sum_probs=137.4
Q ss_pred EEEEEeCCCeEEEEecCCCCeeeEEEccc-------------------------CCce--eeEEEec---CCCeEEEEe-
Q 007855 311 LILSAGMDTKVKIWDVFNSGKCMRTYMGH-------------------------SKAV--RDISFCN---DGTKFLTAS- 359 (587)
Q Consensus 311 ~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------------------------~~~V--~~l~fs~---dg~~l~s~s- 359 (587)
.|.||+..|.|+|+-+ .+.+.+..+.-. .+.. ..+++.. ||++|+.-.
T Consensus 72 ~f~SgG~sG~v~v~G~-PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdk 150 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGV-PSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDK 150 (638)
T ss_dssp EEEECGGGCCEEEEEE-TTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEET
T ss_pred EEeecCcCceEEEEec-CCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecC
Confidence 4678888899999988 666666655310 0111 1344433 677887766
Q ss_pred CCCeEEEEECCCCcEEEEeecCC--cceEEEEccCCCCCcEEEEEeC-------CCcE------------EEEeCCCCcE
Q 007855 360 YDKNIKYWDTETGQVIRTFSTGK--IPYVVKLNPDDDKQNILLAGMS-------DKKI------------VQWDMNTKEI 418 (587)
Q Consensus 360 ~Dg~I~vWd~~t~~~i~~~~~~~--~~~~~~~~~~~~~~~~l~sg~~-------dg~I------------~iwD~~t~~~ 418 (587)
....|...+++..++-..+..+. ....+++... .+..++++++. ||.. ...|..+.+.
T Consensus 151 an~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~-p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v 229 (638)
T 3sbq_A 151 ANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKV-PHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEM 229 (638)
T ss_dssp TTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCS-SBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSE
T ss_pred CCcceEEEECCcEeeceeEeCCCCcCccccccccc-CCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEE
Confidence 35778888999888766665443 3444444421 12245555542 2221 1123333333
Q ss_pred EEEEccCCCCeeEEEEecCCCEEEEEECCC----------------------------------------CEEEEECCC-
Q 007855 419 TQEYDQHLGAVNTITFVDNNRRFVTSSDDK----------------------------------------SLRVWEFGI- 457 (587)
Q Consensus 419 ~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg----------------------------------------~I~iwd~~~- 457 (587)
...+.- .+....+...+++.+.++.+.+. .|.+.|.+.
T Consensus 230 ~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~ 308 (638)
T 3sbq_A 230 AFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKK 308 (638)
T ss_dssp EEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCB
T ss_pred EEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccc
Confidence 222211 12333344566777777776421 233444333
Q ss_pred ---C-eEEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceee------cccceecc-cccccceEEEEEc
Q 007855 458 ---P-VVIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL------NKKKRFAG-HIVAGYACQVNFS 525 (587)
Q Consensus 458 ---~-~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~------~~~~~~~~-~~~~~~i~~l~~s 525 (587)
. .....+ +...+...+.++|+|+++++++ .+.++.++|+.....+ .......+ ....-.....+|.
T Consensus 309 ~~~~~~~~~~i--P~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd 386 (638)
T 3sbq_A 309 DGKDSKFTRYV--PVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFD 386 (638)
T ss_dssp TTBCCSSEEEE--EESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEEC
T ss_pred cccCCceEEEE--eCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEEC
Confidence 1 112222 2334456788999999988765 5788999998742211 11111111 1122334568999
Q ss_pred CCCCEEEEEcCCCcEEEEeCCCC----------eeEEEEecCCCC
Q 007855 526 PDGRFVMSGDGEGKCWFWDWKSC----------KVFRTLKCHEGV 560 (587)
Q Consensus 526 pdg~~L~sgs~dG~I~vwd~~t~----------~~~~~l~~h~~~ 560 (587)
++|....+-.-|..|.-|++... ..+.++..|-++
T Consensus 387 ~~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yqp 431 (638)
T 3sbq_A 387 GRGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQP 431 (638)
T ss_dssp SSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCE
T ss_pred CCCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccCC
Confidence 99966667778999999998653 567777777654
No 337
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.25 E-value=2.5 Score=41.45 Aligned_cols=199 Identities=6% Similarity=0.042 Sum_probs=109.3
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCC--------------CeEEEEECCCCcEEEEeecCCc
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYD--------------KNIKYWDTETGQVIRTFSTGKI 383 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~D--------------g~I~vWd~~t~~~i~~~~~~~~ 383 (587)
++.|...+. .+.....+... .+--++++|.+|+-+... ..|+..++..++....... .
T Consensus 36 ~~~ly~~~~--dg~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--~ 107 (302)
T 3s25_A 36 NGRLYAMNI--DGSNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--P 107 (302)
T ss_dssp TTEEEEEET--TSCSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--C
T ss_pred CceEEEEcC--CCCCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--C
Confidence 455555554 44444444322 234567889888877653 4678888877753332221 1
Q ss_pred ceEEEEccCCCCCcEEEEE---eCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEEC-CCCEEEEECCCCe
Q 007855 384 PYVVKLNPDDDKQNILLAG---MSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSD-DKSLRVWEFGIPV 459 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg---~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~-Dg~I~iwd~~~~~ 459 (587)
...+++.+. .+.++- .....|...++..... ..+..+.. ..++++++.|+-++. ...|.+.++....
T Consensus 108 --~~~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 108 --CIYASLIGN--YIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp --EEEEEEETT--EEEEEEESSSSCEEEEEEETTSCCC-EEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred --ccEEEEeCC--EEEEEeecCCCCceEEEEECCCCCe-EEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 224455332 344443 2445676777764443 33333322 345677888877665 5688888887765
Q ss_pred EEEEeecCCCcceeEEEEeCCCCEEEEEECC--CeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEc--
Q 007855 460 VIKYISEPHMHSMPSISLHPNTNWLAAQSLD--NQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGD-- 535 (587)
Q Consensus 460 ~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs-- 535 (587)
....+ . . .. ...++|++.+|+-.... ..|..-++....... +.. ..+ ..|+|++.+|+-++
T Consensus 179 ~~~l~-~-~--~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~----Lt~----~~~--~~~~~~g~~Iy~~~~~ 243 (302)
T 3s25_A 179 EALFY-D-C--NC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVV----LTE----ANI--EHYNVYGSLIFYQRGG 243 (302)
T ss_dssp EEEEE-C-S--CE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEE----CSC----SCE--EEEEEETTEEEEEECS
T ss_pred EEEEe-C-C--Cc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEE----EeC----CCc--ceEEECCCEEEEEECC
Confidence 44333 2 1 11 23466889888877654 356666665543221 111 112 34778888887553
Q ss_pred CCCcEEEEeCCCC
Q 007855 536 GEGKCWFWDWKSC 548 (587)
Q Consensus 536 ~dG~I~vwd~~t~ 548 (587)
..+.|..-++...
T Consensus 244 ~~~~i~~~~~DG~ 256 (302)
T 3s25_A 244 DNPALCVVKNDGT 256 (302)
T ss_dssp SSCEEEEEETTSC
T ss_pred CCcEEEEEECCCC
Confidence 2456777776543
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.25 E-value=0.78 Score=46.15 Aligned_cols=154 Identities=16% Similarity=0.132 Sum_probs=86.5
Q ss_pred EEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEE--EEee---cCCCcceeEEEEeCC---CCEEEEE-E--
Q 007855 420 QEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVI--KYIS---EPHMHSMPSISLHPN---TNWLAAQ-S-- 488 (587)
Q Consensus 420 ~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~--~~~~---~~~~~~i~~i~~sp~---g~~l~~~-s-- 488 (587)
..+.........|+|.|++++|++--..|.|++++...+... ..+. .........|+++|+ +.+|++. +
T Consensus 25 ~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~ 104 (347)
T 3das_A 25 RTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA 104 (347)
T ss_dssp EEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS
T ss_pred EEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC
Confidence 344445667889999999987766655899999986554432 2121 123456789999995 3445443 2
Q ss_pred CCCeEEEEEcCCce----eecc----cceecccccccceEEEEEcCCCCEEEEEcC-------------CCcEEEEeCCC
Q 007855 489 LDNQILIYSTRERF----QLNK----KKRFAGHIVAGYACQVNFSPDGRFVMSGDG-------------EGKCWFWDWKS 547 (587)
Q Consensus 489 ~dg~I~iwd~~~~~----~~~~----~~~~~~~~~~~~i~~l~~spdg~~L~sgs~-------------dG~I~vwd~~t 547 (587)
.++.|.-|.+.... .+.. +..+.. ........|.|.|||.+.++.+. .|.|.-.+...
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG 183 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG 183 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence 45567767665411 1100 111111 01123345999999987766432 35666556542
Q ss_pred C--------eeEEEEecCCCCEEEEEEcCCCCCEEEE
Q 007855 548 C--------KVFRTLKCHEGVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 548 ~--------~~~~~l~~h~~~V~~v~~sp~~~~~l~s 576 (587)
. ....--.+|.. ...++|+| ++.+.++
T Consensus 184 ~ip~~nPf~~~~i~a~G~RN-p~Gla~dp-~G~L~~~ 218 (347)
T 3das_A 184 EPAPGNPFPGSPVYSYGHRN-VQGLAWDD-KQRLFAS 218 (347)
T ss_dssp SBCTTCSSTTCCEEEBCCSB-CCEEEECT-TCCEEEE
T ss_pred CccCCCCCCCCeEEeeCCCC-cceEEECC-CCCEEEE
Confidence 2 11111234554 46899999 5554443
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.23 E-value=1.6 Score=40.80 Aligned_cols=176 Identities=9% Similarity=-0.064 Sum_probs=91.6
Q ss_pred EEEEEeCCCcEEEEeCCCCc------EEEEE-ccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe------EEEEe
Q 007855 398 ILLAGMSDKKIVQWDMNTKE------ITQEY-DQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV------VIKYI 464 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~------~~~~~-~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~------~~~~~ 464 (587)
+|++...| +|+.=-...+. ....+ ..--..+..++|+|++.+.++ .+|.++-.+..+.. .-..+
T Consensus 6 ~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~I 82 (236)
T 1tl2_A 6 MLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKI 82 (236)
T ss_dssp CEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEE
T ss_pred EEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEe
Confidence 45555555 66655554443 11222 111347889999999987666 56766555543310 01222
Q ss_pred ecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec--ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEE
Q 007855 465 SEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN--KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF 542 (587)
Q Consensus 465 ~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~--~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v 542 (587)
-...-....++.|.|+|.+.++ .||.|+-++-.+..... ......+...-..+..|.|.|+|.+.++. +|.++-
T Consensus 83 G~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr 158 (236)
T 1tl2_A 83 GNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYK 158 (236)
T ss_dssp ECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEE
T ss_pred cccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEe
Confidence 1111222578999999988777 56988877642211110 00011111111346779999999877776 777654
Q ss_pred EeCCCCe------eEEEEe-cCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 543 WDWKSCK------VFRTLK-CHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 543 wd~~t~~------~~~~l~-~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
+...+.. ....+- ..-....-+.|.+ ++.+.+ +. +|.|
T Consensus 159 ~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~-~G~l~~-v~-~g~~ 203 (236)
T 1tl2_A 159 ALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS-VGTLFG-VQ-GGKF 203 (236)
T ss_dssp ECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT-TSCEEE-EE-TTEE
T ss_pred cCCCCCCCcccccccceeccCCcceEEEEEECC-CCcEEE-Ee-CCeE
Confidence 4333211 111111 2223445566777 554333 33 6654
No 340
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.16 E-value=1 Score=44.17 Aligned_cols=144 Identities=10% Similarity=0.078 Sum_probs=75.1
Q ss_pred CCCeEEEEeCC-------CeEEEEECCCCcEEEEeecCCc--ceEEEEccCCCCCcEEEEEeC------CCcEEEEeCCC
Q 007855 351 DGTKFLTASYD-------KNIKYWDTETGQVIRTFSTGKI--PYVVKLNPDDDKQNILLAGMS------DKKIVQWDMNT 415 (587)
Q Consensus 351 dg~~l~s~s~D-------g~I~vWd~~t~~~i~~~~~~~~--~~~~~~~~~~~~~~~l~sg~~------dg~I~iwD~~t 415 (587)
++..++.|+.+ ..+.+||+.+.+-...-..... ...+.. . ++.+++.|+. -..+.+||+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~---~~~iyv~GG~~~~~~~~~~~~~yd~~~ 184 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-H---NGMIYCLGGKTDDKKCTNRVFIYNPKK 184 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-E---TTEEEEECCEESSSCBCCCEEEEETTT
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-E---CCEEEEEcCCCCCCCccceEEEEcCCC
Confidence 56777777754 3578889988765443222211 122222 2 2356677664 24689999988
Q ss_pred CcEEEEEccCCC-CeeEEEEecCCCEEEEEECCC-----CEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEEC
Q 007855 416 KEITQEYDQHLG-AVNTITFVDNNRRFVTSSDDK-----SLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSL 489 (587)
Q Consensus 416 ~~~~~~~~~h~~-~I~~i~~sp~~~~l~s~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~ 489 (587)
.+-...-..... .-.+++.. ++..++.|+.++ .+.+||+.+..-...-..+....-.+++. -++.+++.|+.
T Consensus 185 ~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~ 262 (318)
T 2woz_A 185 GDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVS-LAGSLYAIGGF 262 (318)
T ss_dssp TEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred CEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEE-ECCEEEEECCe
Confidence 764433211111 11222332 567777776543 47788987765433221222211222332 24566666654
Q ss_pred C--------------CeEEEEEcCC
Q 007855 490 D--------------NQILIYSTRE 500 (587)
Q Consensus 490 d--------------g~I~iwd~~~ 500 (587)
+ ..|.+||+.+
T Consensus 263 ~~~~~~~~~~~~~~~~~v~~yd~~~ 287 (318)
T 2woz_A 263 AMIQLESKEFAPTEVNDIWKYEDDK 287 (318)
T ss_dssp CCBC----CCBCCBCCCEEEEETTT
T ss_pred eccCCCCceeccceeeeEEEEeCCC
Confidence 3 3467777655
No 341
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.44 E-value=1.8 Score=48.00 Aligned_cols=198 Identities=10% Similarity=0.086 Sum_probs=106.1
Q ss_pred cCCCeEEEEeCC----CeEEEEECCCCcEEEEe-e-------cCCcceEEEEccCCCCCcEEEEEeCC------CcEEEE
Q 007855 350 NDGTKFLTASYD----KNIKYWDTETGQVIRTF-S-------TGKIPYVVKLNPDDDKQNILLAGMSD------KKIVQW 411 (587)
Q Consensus 350 ~dg~~l~s~s~D----g~I~vWd~~t~~~i~~~-~-------~~~~~~~~~~~~~~~~~~~l~sg~~d------g~I~iw 411 (587)
.++..++.|+.+ ..+.+||..+++....- . .......+..... ++.+++.|+.+ ..+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~--~~~lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR--NNQLLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT--TTEEEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc--CCEEEEEcCCCCCCCccccEEEE
Confidence 456677777653 46888998887654433 2 1112223333320 23577777754 357899
Q ss_pred eCCCCcEEEEEccCCC-CeeEEEEecCCCEEEEEECCC--CEEEEECCCCeEEEEee---cC-CCcceeEEEEeCC-CCE
Q 007855 412 DMNTKEITQEYDQHLG-AVNTITFVDNNRRFVTSSDDK--SLRVWEFGIPVVIKYIS---EP-HMHSMPSISLHPN-TNW 483 (587)
Q Consensus 412 D~~t~~~~~~~~~h~~-~I~~i~~sp~~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~---~~-~~~~i~~i~~sp~-g~~ 483 (587)
|+.+.+-...-..... .-.+++...++..++.|+.++ .+.+||..+..-..... .+ ......++.+..+ +.+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~i 553 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEE
T ss_pred eCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEE
Confidence 9988654332111111 112333334788888887655 69999998876443221 11 1122233555655 667
Q ss_pred EEEEEC--C-----CeEEEEEcCCcee-----ecccceecccccccceEEEEEcCCCCEEEEEcC--------CCcEEEE
Q 007855 484 LAAQSL--D-----NQILIYSTRERFQ-----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG--------EGKCWFW 543 (587)
Q Consensus 484 l~~~s~--d-----g~I~iwd~~~~~~-----~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~--------dG~I~vw 543 (587)
++.|+. + +.+.+||+.+..- .......... ...-..++...++++++.|+. ...|.+|
T Consensus 554 yv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~--~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~y 631 (695)
T 2zwa_A 554 IILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLF--QRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISL 631 (695)
T ss_dssp EEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGG--CCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEE
T ss_pred EEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCC--CcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEE
Confidence 777765 2 4688999876541 1111111000 111112333333677777774 3459999
Q ss_pred eCCCCeeE
Q 007855 544 DWKSCKVF 551 (587)
Q Consensus 544 d~~t~~~~ 551 (587)
|..+.+-.
T Consensus 632 d~~t~~W~ 639 (695)
T 2zwa_A 632 DPLSETLT 639 (695)
T ss_dssp ETTTTEEE
T ss_pred ECCCCeEE
Confidence 99887543
No 342
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.09 E-value=1.9 Score=47.72 Aligned_cols=150 Identities=16% Similarity=0.263 Sum_probs=84.3
Q ss_pred cEEEEEeCC----CcEEEEeCCCCcEEEEE-c------cCCCCeeEEEEec-CCCEEEEEECCC------CEEEEECCCC
Q 007855 397 NILLAGMSD----KKIVQWDMNTKEITQEY-D------QHLGAVNTITFVD-NNRRFVTSSDDK------SLRVWEFGIP 458 (587)
Q Consensus 397 ~~l~sg~~d----g~I~iwD~~t~~~~~~~-~------~h~~~I~~i~~sp-~~~~l~s~s~Dg------~I~iwd~~~~ 458 (587)
.+++.|+.+ ..+.+||+.+++....- . .....-.+++..+ ++..++.|+.++ .+.+||..+.
T Consensus 399 ~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~ 478 (695)
T 2zwa_A 399 DVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTR 478 (695)
T ss_dssp CEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTT
T ss_pred EEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCC
Confidence 467777643 46889998887654433 1 1111223444444 777888877543 5788998876
Q ss_pred eEEEEeecCCCcceeEEEEeCCCCEEEEEECCC--eEEEEEcCCceeecccce---ecccccccceEEEEEcCC-CCEEE
Q 007855 459 VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDN--QILIYSTRERFQLNKKKR---FAGHIVAGYACQVNFSPD-GRFVM 532 (587)
Q Consensus 459 ~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg--~I~iwd~~~~~~~~~~~~---~~~~~~~~~i~~l~~spd-g~~L~ 532 (587)
.-...-..+....-.+++...++.+++.|+.++ .+.+||..+.. ...... .... ......+.+..+ +++++
T Consensus 479 ~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~--r~~~~a~v~~~~~~~iyv 555 (695)
T 2zwa_A 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQN--SLVSAGLEFDPVSKQGII 555 (695)
T ss_dssp EEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGS--CCBSCEEEEETTTTEEEE
T ss_pred cEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCc--ccceeEEEEeCCCCEEEE
Confidence 543332222222223344434788888887654 68999987642 211111 1111 111223555555 66777
Q ss_pred EEcC--C-----CcEEEEeCCCCe
Q 007855 533 SGDG--E-----GKCWFWDWKSCK 549 (587)
Q Consensus 533 sgs~--d-----G~I~vwd~~t~~ 549 (587)
.|+. + ..+.+||+.+..
T Consensus 556 ~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 556 LGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred ECCcCCCCCeeeCcEEEEEccCCc
Confidence 7765 2 358999988776
No 343
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.02 E-value=7 Score=41.56 Aligned_cols=230 Identities=8% Similarity=0.133 Sum_probs=129.4
Q ss_pred eEEEEeCCCeEEEEECCCCcEEEEeecCCcc----------------------------eEEEEccCCCCCcEEEEEe-C
Q 007855 354 KFLTASYDKNIKYWDTETGQVIRTFSTGKIP----------------------------YVVKLNPDDDKQNILLAGM-S 404 (587)
Q Consensus 354 ~l~s~s~Dg~I~vWd~~t~~~i~~~~~~~~~----------------------------~~~~~~~~~~~~~~l~sg~-~ 404 (587)
.|.||+..|.|+|+-+-+++.+..+..-... ..+++.--.-.+++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4778899999999999999988886531100 0111111101123444443 5
Q ss_pred CCcEEEEeCCCCcEEEEEc-cCCCCeeEEEEe--cCCCEEEEEEC-------CCCEE---------E---EECCCCeEEE
Q 007855 405 DKKIVQWDMNTKEITQEYD-QHLGAVNTITFV--DNNRRFVTSSD-------DKSLR---------V---WEFGIPVVIK 462 (587)
Q Consensus 405 dg~I~iwD~~t~~~~~~~~-~h~~~I~~i~~s--p~~~~l~s~s~-------Dg~I~---------i---wd~~~~~~~~ 462 (587)
+..|...++...++-+.+. .....+.++.|. |+..+++.++. ||... + .|..+.....
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 6778888888877655443 345678888886 78888888775 33311 1 1222222211
Q ss_pred EeecCCCcceeEEEEeCCCCEEEEEECC---------------CeEEEEEcCC-------c--eeec--ccceecccc--
Q 007855 463 YISEPHMHSMPSISLHPNTNWLAAQSLD---------------NQILIYSTRE-------R--FQLN--KKKRFAGHI-- 514 (587)
Q Consensus 463 ~~~~~~~~~i~~i~~sp~g~~l~~~s~d---------------g~I~iwd~~~-------~--~~~~--~~~~~~~~~-- 514 (587)
.+.. ......+...++++|.++.|.+ ..|.++++.. + ..+. ....+.+..
T Consensus 232 Qv~v--~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~ 309 (638)
T 3sbq_A 232 QVIV--DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKD 309 (638)
T ss_dssp EEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBT
T ss_pred EEEc--CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEcccccc
Confidence 1111 1233345557788888877643 2366666431 1 1111 111121111
Q ss_pred -----------cccceEEEEEcCCCCEEEEEc-CCCcEEEEeCCCC------ee-------EEEEecCCCCEEEEEEcCC
Q 007855 515 -----------VAGYACQVNFSPDGRFVMSGD-GEGKCWFWDWKSC------KV-------FRTLKCHEGVCIGCEWHPL 569 (587)
Q Consensus 515 -----------~~~~i~~l~~spdg~~L~sgs-~dG~I~vwd~~t~------~~-------~~~l~~h~~~V~~v~~sp~ 569 (587)
.......+.++|||+|+++++ .+.++.++|+... ++ +..... .-.....+|.+
T Consensus 310 ~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-GlGPlHt~Fd~- 387 (638)
T 3sbq_A 310 GKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-GLGPLHTTFDG- 387 (638)
T ss_dssp TBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC-CSCEEEEEECS-
T ss_pred ccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC-CCcccEEEECC-
Confidence 011223478999999987655 5788999998742 11 333332 23457889998
Q ss_pred CCCEEEEEECCCcEEEcC
Q 007855 570 EQSKVATCGWDGLIKYWD 587 (587)
Q Consensus 570 ~~~~l~s~g~DG~I~iWD 587 (587)
++....|.-.|..|.-||
T Consensus 388 ~G~aYTtlfidSqvvkWn 405 (638)
T 3sbq_A 388 RGNAYTTLFIDSQVVKWN 405 (638)
T ss_dssp SSEEEEEETTTTEEEEEE
T ss_pred CCceEeeeeecceEEEEe
Confidence 554455555799999885
No 344
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.84 E-value=2.9 Score=38.96 Aligned_cols=171 Identities=11% Similarity=0.051 Sum_probs=90.0
Q ss_pred CcEEEEEeCCCeEEEEecCCCCe------eeEEEccc--CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcE------
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGK------CMRTYMGH--SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQV------ 374 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~------~~~~~~~h--~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~------ 374 (587)
..+|++...| +|+.=.. ..+. ...++ ++ =..+.+++|+|+|.+.++ .+|.+.-.+..+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~-P~~~~~~~~~~a~~i-G~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s 78 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTY-PQNKNDNWLARATLI-GKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGR 78 (236)
T ss_dssp CCCEEEEETT-EEEEESC-CCSTTCCHHHHSEEE-ESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred ceEEEEEeCC-cEEecCC-CCCcccchhhhcccc-CccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccc
Confidence 4466666767 6655444 2222 11222 22 247889999998886655 667766666544211
Q ss_pred EEEeec-C-CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcE-------EEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 375 IRTFST-G-KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEI-------TQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 375 i~~~~~-~-~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~-------~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
-..+-. + ..-..+.+.+++ . |+++ .||.|+-++..+... ...-..--..+..|.+.|+|.+.++.
T Consensus 79 ~t~IG~~Gw~~F~a~~fD~~G---~-LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~- 152 (236)
T 1tl2_A 79 AKKIGNGGWNQFQFLFFDPNG---Y-LYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH- 152 (236)
T ss_dssp CEEEECSCGGGCSEEEECTTS---C-EEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-
T ss_pred ccEecccccccceEEEECCCC---C-EEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-
Confidence 111111 0 011244455443 3 4444 679998888643210 11112222567999999999877777
Q ss_pred CCCCEEEEECCCCe------EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeE
Q 007855 446 DDKSLRVWEFGIPV------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQI 493 (587)
Q Consensus 446 ~Dg~I~iwd~~~~~------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I 493 (587)
|+.++-+..-... ....+....-...+.+.|.+++.+.++. ++.|
T Consensus 153 -dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~ 203 (236)
T 1tl2_A 153 -GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF 203 (236)
T ss_dssp -TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred -CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence 6764332221100 1111221233345557788888877776 6644
No 345
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.61 E-value=7.9 Score=40.28 Aligned_cols=107 Identities=12% Similarity=0.097 Sum_probs=61.5
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE--Eeec-------CCcceEEEEccCCCCCcEEEEEeC------
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFST-------GKIPYVVKLNPDDDKQNILLAGMS------ 404 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~--~~~~-------~~~~~~~~~~~~~~~~~~l~sg~~------ 404 (587)
-...+.|+|.|+|+++++-...+.|++++..+++... .+.. .....-+++.|+-.....|++...
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~ 105 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS 105 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence 3456799999999877665444579888876665432 2221 122335788875333334444442
Q ss_pred -------CCcEEEEeCCCC-------cEEE-EEcc-CCCCeeEEEEecCCCEEEEEEC
Q 007855 405 -------DKKIVQWDMNTK-------EITQ-EYDQ-HLGAVNTITFVDNNRRFVTSSD 446 (587)
Q Consensus 405 -------dg~I~iwD~~t~-------~~~~-~~~~-h~~~I~~i~~sp~~~~l~s~s~ 446 (587)
...|.-|++... +.+. .+.. .......|+|.|+|.++++.+.
T Consensus 106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666655322 1111 1221 1234788999999988887664
No 346
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=93.45 E-value=6.9 Score=39.12 Aligned_cols=239 Identities=12% Similarity=0.093 Sum_probs=123.3
Q ss_pred EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEE--Eee-----cCCcceEEEEccCCCCCcEEEEE---eC
Q 007855 335 TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIR--TFS-----TGKIPYVVKLNPDDDKQNILLAG---MS 404 (587)
Q Consensus 335 ~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~--~~~-----~~~~~~~~~~~~~~~~~~~l~sg---~~ 404 (587)
.+...-..-+.|+|.|+|++|++--..|.|++++..+++... .+. ......-+++.|+-.....|++. ..
T Consensus 26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~ 105 (347)
T 3das_A 26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS 105 (347)
T ss_dssp EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence 343344567899999999877766558999999876665422 221 12334567777742111234333 23
Q ss_pred CCcEEEEeCCCC----------cEE-EEEcc-CCCCeeEEEEecCCCEEEEEEC-------------CCCEEEEECCCCe
Q 007855 405 DKKIVQWDMNTK----------EIT-QEYDQ-HLGAVNTITFVDNNRRFVTSSD-------------DKSLRVWEFGIPV 459 (587)
Q Consensus 405 dg~I~iwD~~t~----------~~~-~~~~~-h~~~I~~i~~sp~~~~l~s~s~-------------Dg~I~iwd~~~~~ 459 (587)
++.|.-|.+..+ +.+ ..+.. .......|.|.|+|.++++.++ -|.|.-.+.....
T Consensus 106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i 185 (347)
T 3das_A 106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP 185 (347)
T ss_dssp SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence 456666665431 111 22221 1123467999999988777653 2444444443220
Q ss_pred -------EEEEeecCCCcceeEEEEeCCCCEEEEEE-CCCeEEEEEcCCceee---------------cccceecccccc
Q 007855 460 -------VIKYISEPHMHSMPSISLHPNTNWLAAQS-LDNQILIYSTRERFQL---------------NKKKRFAGHIVA 516 (587)
Q Consensus 460 -------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s-~dg~I~iwd~~~~~~~---------------~~~~~~~~~~~~ 516 (587)
....+...+ .....++|+|+|.++++-. .++.-.|.-+..+... .....+..+ .
T Consensus 186 p~~nPf~~~~i~a~G~-RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~--~ 262 (347)
T 3das_A 186 APGNPFPGSPVYSYGH-RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD--E 262 (347)
T ss_dssp CTTCSSTTCCEEEBCC-SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT--T
T ss_pred cCCCCCCCCeEEeeCC-CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC--C
Confidence 001122223 2456899999877655432 2222222222221110 000011100 0
Q ss_pred cceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee----EEEEecCCCCEEEEEEcCCCCCEEEEEE
Q 007855 517 GYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV----FRTLKCHEGVCIGCEWHPLEQSKVATCG 578 (587)
Q Consensus 517 ~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~----~~~l~~h~~~V~~v~~sp~~~~~l~s~g 578 (587)
.....++|. +|.+++..-..+.|....+..... ...+.+..+.+..|+..| ++.++++.+
T Consensus 263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECC-CCcEEEEEc
Confidence 123456665 455555556666777777765432 223334456899999999 555555543
No 347
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.09 E-value=3.2 Score=49.09 Aligned_cols=195 Identities=13% Similarity=0.198 Sum_probs=111.3
Q ss_pred EccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC-cEEEEeecCC
Q 007855 304 FFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFSTGK 382 (587)
Q Consensus 304 ~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~-~~i~~~~~~~ 382 (587)
.+|. .+.||.=. ..++.|+|+ .+...+..+.- ...|.--.|-.+. .|+..+ +..|.-|++... .+++.|..+.
T Consensus 73 MnP~-~~iiALra-g~~lQiFnl-~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~ 146 (1630)
T 1xi4_A 73 MNPA-SKVIALKA-GKTLQIFNI-EMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (1630)
T ss_pred cCCC-cceEEEec-CCeEEEeeh-HHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence 4565 45555443 688999999 56655555543 3456666665443 344433 368999999742 3444443221
Q ss_pred ---cceEEEEccCCCCCcEEEEEe------CCCcEEEEeCCCCcEEEEEccCCCCeeEEEEe--cC-CCEEEEEEC---C
Q 007855 383 ---IPYVVKLNPDDDKQNILLAGM------SDKKIVQWDMNTKEITQEYDQHLGAVNTITFV--DN-NRRFVTSSD---D 447 (587)
Q Consensus 383 ---~~~~~~~~~~~~~~~~l~sg~------~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~s--p~-~~~l~s~s~---D 447 (587)
...++....+.+..-++++|- -.|.+.+|....+ ..+.+.+|.+.-..+... +. ...|+.+.. .
T Consensus 147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g 225 (1630)
T 1xi4_A 147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG 225 (1630)
T ss_pred hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence 233455555555545565554 3478888887644 344556665544433332 11 122222221 2
Q ss_pred CCEEEEECCCC-----e---EEEEeecC---CCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeec
Q 007855 448 KSLRVWEFGIP-----V---VIKYISEP---HMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLN 505 (587)
Q Consensus 448 g~I~iwd~~~~-----~---~~~~~~~~---~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~ 505 (587)
+.+.|.++... . ....+..+ ...-..++..++.-..+...+.-|.|.+||+.++..+.
T Consensus 226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhh
Confidence 67888888543 0 01111111 12234567778877888899999999999999987653
No 348
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.05 E-value=11 Score=37.95 Aligned_cols=263 Identities=11% Similarity=0.031 Sum_probs=121.9
Q ss_pred CCCeEEEEEccCCCcEEEEEeCCC----eEEEEecCCCCeeeEEEcc--------------cCCceeeEEEec-C-CCeE
Q 007855 296 TKGVSAIRFFPKYGHLILSAGMDT----KVKIWDVFNSGKCMRTYMG--------------HSKAVRDISFCN-D-GTKF 355 (587)
Q Consensus 296 ~~~V~~l~~sp~~g~~L~sgs~Dg----~I~iWd~~~~~~~~~~~~~--------------h~~~V~~l~fs~-d-g~~l 355 (587)
...|.+|++.|.+...|..++..| .|... ...++....+.. +...|.+|++.| + ...|
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l 131 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW 131 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence 346999999983334444444444 34332 233333222211 112577899986 2 4566
Q ss_pred EEEeCCCeEEEEECCCCcEEEEeec--------------------CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC
Q 007855 356 LTASYDKNIKYWDTETGQVIRTFST--------------------GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT 415 (587)
Q Consensus 356 ~s~s~Dg~I~vWd~~t~~~i~~~~~--------------------~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t 415 (587)
+.+...+.|...+ +.++.-..+.. ......+.+.+.. ...++++...+.|...+- .
T Consensus 132 ~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~--~~~l~vg~~~ggl~~s~D-g 207 (394)
T 3b7f_A 132 YAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRD--PKHLYIGMSSGGVFESTD-A 207 (394)
T ss_dssp EEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTC--TTCEEEEEETBEEEEESS-T
T ss_pred EEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCC--CCEEEEEECCCCEEEECC-C
Confidence 6666556554442 23332222211 0112344444422 233555554454544322 2
Q ss_pred CcEEEEEcc-----C--------CCCeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCC-C---cceeEEEE
Q 007855 416 KEITQEYDQ-----H--------LGAVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH-M---HSMPSISL 477 (587)
Q Consensus 416 ~~~~~~~~~-----h--------~~~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~-~---~~i~~i~~ 477 (587)
++.-..+.. + ...+.+|.+.|. ...|+++...+ |...+- .+.....+.... . ..+.++.+
T Consensus 208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~ 285 (394)
T 3b7f_A 208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMDR-REGVWKRIGDAMPREVGDIGFPIVV 285 (394)
T ss_dssp TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEET-TTTEEECGGGGSCTTTCSCEEEEEE
T ss_pred CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeCC-CCCcceECCCCCCCCCccceEEEEE
Confidence 222222211 0 124888999885 35676676544 444432 233333332211 1 23467788
Q ss_pred eC-CCCEEEEEEC-----------CCeEEEEEcCC-ceeecccc-eecccc--cccceEEEEEcCC-CCEEEEEcCCCcE
Q 007855 478 HP-NTNWLAAQSL-----------DNQILIYSTRE-RFQLNKKK-RFAGHI--VAGYACQVNFSPD-GRFVMSGDGEGKC 540 (587)
Q Consensus 478 sp-~g~~l~~~s~-----------dg~I~iwd~~~-~~~~~~~~-~~~~~~--~~~~i~~l~~spd-g~~L~sgs~dG~I 540 (587)
+| +...|.++.. ++...+|...+ +....... .+.... .......++++|. ...|+.++..+.|
T Consensus 286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 76 3344555432 23345555443 22222111 111100 0011134778874 3456677666666
Q ss_pred EEEeCCCCeeEEEEecCCCCEEEEEEc
Q 007855 541 WFWDWKSCKVFRTLKCHEGVCIGCEWH 567 (587)
Q Consensus 541 ~vwd~~t~~~~~~l~~h~~~V~~v~~s 567 (587)
+.-. ..++....+..+-..+.++.|.
T Consensus 366 ~~S~-D~G~tW~~~~~~lp~~~~v~~~ 391 (394)
T 3b7f_A 366 WASA-DEGEHWQCIASHLPHIYAVQSA 391 (394)
T ss_dssp EEES-STTSBCEEEECSCSCEEEEEEE
T ss_pred EEEC-CCCCCceEcccCCCCeeEEEEe
Confidence 5432 4455555555555567777775
No 349
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=90.71 E-value=3.9 Score=39.61 Aligned_cols=218 Identities=11% Similarity=0.014 Sum_probs=105.6
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCCC-cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEE
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEIT 419 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~-~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~ 419 (587)
..|..|+.... +.+... ||.|..|-.... ++-........+..++.-. .+.++. . ||.|+.|-....-.+
T Consensus 24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~----~hs~~l-~-~G~v~~wG~n~~Gql 94 (282)
T 3qhy_B 24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN----YHSLAL-K-DGEVIAWGGNEDGQT 94 (282)
T ss_dssp SSCCEEEECSS--EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS----SEEEEE-E-TTEEEEEECCTTSTT
T ss_pred CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC----CEEEEE-E-CCEEEEeeCCCCCCC
Confidence 35777776543 333335 899999975432 2110001111222222221 134444 4 899999976542111
Q ss_pred EEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcC
Q 007855 420 QEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTR 499 (587)
Q Consensus 420 ~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~ 499 (587)
..-..-...|..|+.... ..+.-. +|.|+.|-....-.+. +.......|..++.... +.++-. +|.|..|-..
T Consensus 95 g~P~~~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg-~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 95 TVPAEARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTT-VPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CCCGGGSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTS-CCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred CCCcccCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCC-CCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 111111346777777643 334444 8999999765421110 11112334666655433 333334 7999999765
Q ss_pred CceeecccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEecCCCCEEEEEEcCCCCCEEEEEEC
Q 007855 500 ERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
...++..... ....|..++.... +.++- .+|.|+.|-....-.+..-......|..++... .. .++. .
T Consensus 168 ~~gqlg~p~~-----~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~-~h-~~al-~- 235 (282)
T 3qhy_B 168 YFGQTTVPAE-----AQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-WY-SLAL-K- 235 (282)
T ss_dssp TTSTTSCCGG-----GGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-SC-EEEE-E-
T ss_pred CCCCCCCcee-----cCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCC-CE-EEEE-E-
Confidence 4333221111 1234555655433 33333 589999997654211110001123466666543 22 2333 3
Q ss_pred CCcEEEc
Q 007855 580 DGLIKYW 586 (587)
Q Consensus 580 DG~I~iW 586 (587)
||.|..|
T Consensus 236 ~g~v~~w 242 (282)
T 3qhy_B 236 NGKVIAW 242 (282)
T ss_dssp TTEEEEE
T ss_pred CCEEEEe
Confidence 8888887
No 350
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=88.52 E-value=22 Score=35.71 Aligned_cols=269 Identities=10% Similarity=-0.020 Sum_probs=119.6
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeEEE--cccCCceeeEEEec-CCCeEEEEeCCC----eEEEEECCCCcEEEEeecC
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMRTY--MGHSKAVRDISFCN-DGTKFLTASYDK----NIKYWDTETGQVIRTFSTG 381 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~~~--~~h~~~V~~l~fs~-dg~~l~s~s~Dg----~I~vWd~~t~~~i~~~~~~ 381 (587)
...|+.|...| +.+++....+.....+ ......|.+|++.| +...|++++..| .|... .+.++.-..+...
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~ 99 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRP 99 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBC
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCcc
Confidence 34666777777 4444431222222221 12345799999998 334455554444 34332 3334332222211
Q ss_pred -------------C--cceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc-------------------CCC
Q 007855 382 -------------K--IPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ-------------------HLG 427 (587)
Q Consensus 382 -------------~--~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~-------------------h~~ 427 (587)
. .+..+.+.+... ...++++...+.|...+- .++.-..+.. ...
T Consensus 100 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~ 177 (394)
T 3b7f_A 100 PAFNKAPEGETGRVVDHVFWLTPGHASE-PGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGP 177 (394)
T ss_dssp CCCCCCC----CCCCCEEEEEEECCTTS-TTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred ccCCCcccccccccccceeEEEeCCCCC-CCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCC
Confidence 0 122344443220 234666666666655432 2222222211 123
Q ss_pred CeeEEEEecC-CCEEEEEECCCCEEEEECCCCeEEEEeecCC------------CcceeEEEEeCC-CCEEEEEECCCeE
Q 007855 428 AVNTITFVDN-NRRFVTSSDDKSLRVWEFGIPVVIKYISEPH------------MHSMPSISLHPN-TNWLAAQSLDNQI 493 (587)
Q Consensus 428 ~I~~i~~sp~-~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~------------~~~i~~i~~sp~-g~~l~~~s~dg~I 493 (587)
.|.+|.+.|. ...|+++..++.|...+ ..+.....+.... ...+.++.++|. ...|++++..+ |
T Consensus 178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l 255 (394)
T 3b7f_A 178 KMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-I 255 (394)
T ss_dssp EEEEEEECTTCTTCEEEEEETBEEEEES-STTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-E
T ss_pred ceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-E
Confidence 5788999873 34455554444444332 2222222221100 134788999985 46677776544 4
Q ss_pred EEEEcCCceeecccce-ecccccccceEEEEEcC-CCCEEEEEcC-----------CCcEEEEeCCC-CeeEEEEec-CC
Q 007855 494 LIYSTRERFQLNKKKR-FAGHIVAGYACQVNFSP-DGRFVMSGDG-----------EGKCWFWDWKS-CKVFRTLKC-HE 558 (587)
Q Consensus 494 ~iwd~~~~~~~~~~~~-~~~~~~~~~i~~l~~sp-dg~~L~sgs~-----------dG~I~vwd~~t-~~~~~~l~~-h~ 558 (587)
...+- .+........ +... ....+..+.++| +...|+++.. ++...||.... |+....+.. -.
T Consensus 256 ~~s~D-~G~tW~~~~~~l~~~-~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp 333 (394)
T 3b7f_A 256 YRMDR-REGVWKRIGDAMPRE-VGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP 333 (394)
T ss_dssp EEEET-TTTEEECGGGGSCTT-TCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred EEeCC-CCCcceECCCCCCCC-CccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence 44332 2222222211 1110 002345678876 3334444421 23344554433 343333321 11
Q ss_pred C------C-EEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 559 G------V-CIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 559 ~------~-V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
. . ...++++|.+...|+.++.++.|.+
T Consensus 334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~ 367 (394)
T 3b7f_A 334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA 367 (394)
T ss_dssp CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence 0 1 1357888755555666666665543
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=87.42 E-value=15 Score=35.40 Aligned_cols=238 Identities=14% Similarity=0.058 Sum_probs=116.1
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC-cEEE
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG-QVIR 376 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~-~~i~ 376 (587)
.|..|+.-.. +.++. . ||.|..|-....+++-.. ......|..|+.......++ . ||.|..|-.... ++-.
T Consensus 25 ~i~~ia~G~~--h~~~l-~-~G~v~~wG~n~~Gqlg~p-~~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~n~~Gqlg~ 96 (282)
T 3qhy_B 25 GVDAIAGGYF--HGLAL-K-GGKVLGWGANLNGQLTMP-AATQSGVDAIAAGNYHSLAL--K-DGEVIAWGGNEDGQTTV 96 (282)
T ss_dssp SCCEEEECSS--EEEEE-E-TTEEEEEECCSSSTTSCC-GGGGSCCCEEEECSSEEEEE--E-TTEEEEEECCTTSTTCC
T ss_pred CCcEEEeCCC--eEEEE-E-CCEEEEEeCCCCCCCCCC-ccCCCCEEEEEeCCCEEEEE--E-CCEEEEeeCCCCCCCCC
Confidence 4666665433 44444 4 899999976333332211 11233577777654432222 4 899999975432 2110
Q ss_pred EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECC
Q 007855 377 TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFG 456 (587)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~ 456 (587)
....... +..+..-. ...++-. +|.|+.|-....-.+.........|..|+.-.. ..+.-. ||.|+.|-..
T Consensus 97 P~~~~~~--v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 97 PAEARSG--VDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDN 167 (282)
T ss_dssp CGGGSSS--EEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECC
T ss_pred CcccCCC--eEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCC
Confidence 0011112 22232221 1233344 999999976542111111112345666666433 333334 7999999765
Q ss_pred CCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecccceecccccccceEEEEEcCCCCEEEEEcC
Q 007855 457 IPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 457 ~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
..-.+. +.......|..++..... .++. .+|.|+.|-.....++.... .....|..++......++ -.
T Consensus 168 ~~gqlg-~p~~~~~~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~-----~~~~~v~~i~~G~~h~~a--l~- 235 (282)
T 3qhy_B 168 YFGQTT-VPAEAQSGVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPT-----EALSGVSAIASGEWYSLA--LK- 235 (282)
T ss_dssp TTSTTS-CCGGGGSSEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCG-----GGGSSCCEEEECSSCEEE--EE-
T ss_pred CCCCCC-CceecCCCeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCc-----ccCCCceEEEcCCCEEEE--EE-
Confidence 421111 111122346666654332 2333 59999999765433221111 011235556554433233 33
Q ss_pred CCcEEEEeCCCCeeEEEEecCCCCEEEEEEcC
Q 007855 537 EGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHP 568 (587)
Q Consensus 537 dG~I~vwd~~t~~~~~~l~~h~~~V~~v~~sp 568 (587)
+|.|+.|-......+.. ...|..++...
T Consensus 236 ~g~v~~wG~n~~gq~~v----~~~v~~iaaG~ 263 (282)
T 3qhy_B 236 NGKVIAWGSSRTAPSSV----QSGVSSIEAGP 263 (282)
T ss_dssp TTEEEEESTTCCCCGGG----SSCEEEEEECS
T ss_pred CCEEEEecCCCCccccC----CCCcEEEEECc
Confidence 89999997655332211 23566666654
No 352
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=86.88 E-value=24 Score=34.39 Aligned_cols=236 Identities=7% Similarity=-0.016 Sum_probs=123.3
Q ss_pred CcEEEEEeCCCeEEEEecCCCCeeeE---------EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC---CC-----
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGKCMR---------TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---ET----- 371 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~~~~---------~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~---~t----- 371 (587)
..++++.+.+|.|+--.+ ......+ .+. ..+.+..+........|+..+..|.+.-... ..
T Consensus 3 e~~~v~~T~~G~iKr~~~-~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 3 EDVVVTLSHQGYVKYQPL-SEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CEEEEEEETTSEEEEEEC-C---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CcEEEEEeCCCEEEEeeH-HHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 567888999999987766 2211111 112 2234545555555667777777787655543 22
Q ss_pred -CcEEE---EeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-------CcEEEEEccCCCCeeEEEEecCCCE
Q 007855 372 -GQVIR---TFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDNNRR 440 (587)
Q Consensus 372 -~~~i~---~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-------~~~~~~~~~h~~~I~~i~~sp~~~~ 440 (587)
|..+. .+..+..+..+...........++..+..|.++...+.. +.....+..+ +.+..+........
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~~~ 159 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGEDE 159 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTTCE
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCCCE
Confidence 22211 122222222222211112235688899999999886632 2122223333 56666666666667
Q ss_pred EEEEECCCCEEEEECCCC-------eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc----cce
Q 007855 441 FVTSSDDKSLRVWEFGIP-------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 509 (587)
Q Consensus 441 l~s~s~Dg~I~iwd~~~~-------~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~----~~~ 509 (587)
++..+..|.+..+....- .-.+.+.......|.++....++..|++.+..|.++-.++........ ...
T Consensus 160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~ 239 (307)
T 1zi0_A 160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVIS 239 (307)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEES
T ss_pred EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEe
Confidence 888888998888876321 112222223445566666555566788889999988887643211111 000
Q ss_pred ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
+.-....+.+..+....+..-|+..+.+|.+.-+.+..
T Consensus 240 ~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 240 IKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred eEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 11001113333333333445566666777766666543
No 353
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=86.78 E-value=24 Score=34.28 Aligned_cols=161 Identities=7% Similarity=0.017 Sum_probs=87.4
Q ss_pred CeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEEEe----CCCeEEEEECCCCcEEEEeecCCcceEEEEccCCC
Q 007855 319 TKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTAS----YDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD 394 (587)
Q Consensus 319 g~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s----~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~ 394 (587)
..|+..++ .+.....+... .+..|++++.+|+-+. ....|...++...... .+..... ..+.+.+
T Consensus 88 ~~Iy~i~~--dg~~~~~l~~~----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~-~lt~~~~---~~~~~~g- 156 (302)
T 3s25_A 88 NSLCRIKR--NGHGSTVLDPD----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKK-KIKNHYL---FTCNTSD- 156 (302)
T ss_dssp EEEEEEET--TSCCCEEEECS----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCE-EEESSCC---CCSEEET-
T ss_pred CeEEEEeC--CCCcceEeecC----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeE-EEeCCCc---eEeeEEC-
Confidence 35666666 23222233221 1336788888888765 2345666677644433 3332222 2334433
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecCCCEEEEEECCC--CEEEEECCCCeEEEEeecCCCcce
Q 007855 395 KQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDK--SLRVWEFGIPVVIKYISEPHMHSM 472 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~i 472 (587)
..++.+......|.+.++..+.....+.+ ... +.++|++.+|+-....+ .|..-++...... .+. ...+
T Consensus 157 -~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt---~~~~ 227 (302)
T 3s25_A 157 -RYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV-VLT---EANI 227 (302)
T ss_dssp -TEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE-ECS---CSCE
T ss_pred -CEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE-EEe---CCCc
Confidence 34555554567899999887765444432 222 34668888888776543 4555566544422 222 1223
Q ss_pred eEEEEeCCCCEEEEEEC--CCeEEEEEcCCc
Q 007855 473 PSISLHPNTNWLAAQSL--DNQILIYSTRER 501 (587)
Q Consensus 473 ~~i~~sp~g~~l~~~s~--dg~I~iwd~~~~ 501 (587)
..++|++.+|+.++. .+.|..-++...
T Consensus 228 --~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 228 --EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp --EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred --ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 347788888876643 356666666543
No 354
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=84.14 E-value=9.2 Score=39.90 Aligned_cols=111 Identities=14% Similarity=0.124 Sum_probs=60.8
Q ss_pred CCCeeEEEEecCCC-EEEEEECCCCEEEEECCCC---eEEEEeecC--------CCcceeEEEEeCC----CCEEEEEEC
Q 007855 426 LGAVNTITFVDNNR-RFVTSSDDKSLRVWEFGIP---VVIKYISEP--------HMHSMPSISLHPN----TNWLAAQSL 489 (587)
Q Consensus 426 ~~~I~~i~~sp~~~-~l~s~s~Dg~I~iwd~~~~---~~~~~~~~~--------~~~~i~~i~~sp~----g~~l~~~s~ 489 (587)
......|+|.|++. +|+++...|.|++++.... ..+..+... .......|+++|+ +.+.++-+.
T Consensus 13 L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~ 92 (463)
T 2wg3_C 13 LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTT 92 (463)
T ss_dssp ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEE
T ss_pred CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeC
Confidence 35667899999996 5666778899999975432 122222110 1346788999996 433333332
Q ss_pred C------------CeEEEEEcCCc--ee-----ecccceecccccccceEEEEEcCCCCEEEEEcC
Q 007855 490 D------------NQILIYSTRER--FQ-----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDG 536 (587)
Q Consensus 490 d------------g~I~iwd~~~~--~~-----~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~ 536 (587)
. ..|.-|.+... .. ...+..+...........|.|.|||.+.++.+.
T Consensus 93 ~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 93 NQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 14555665421 00 011111111111234567999999987665544
No 355
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=83.44 E-value=36 Score=33.47 Aligned_cols=272 Identities=8% Similarity=-0.015 Sum_probs=137.5
Q ss_pred CcEEEEEeCCCeEEEEecCC------CCeeeEEEc-ccCCceeeEEEecCCCeEEEEeCCCeEEEE---ECCC------C
Q 007855 309 GHLILSAGMDTKVKIWDVFN------SGKCMRTYM-GHSKAVRDISFCNDGTKFLTASYDKNIKYW---DTET------G 372 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~------~~~~~~~~~-~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vW---d~~t------~ 372 (587)
..++++.+.+|.|+--.+.. .++-+..+. ...+.+..+........|+.-+..|.+... ++.. |
T Consensus 3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 45778888889888765410 011111111 123455555555556667766677765544 3332 2
Q ss_pred cEEEE---eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-------cEEEEEccCCCCeeEEEEecCCCEEE
Q 007855 373 QVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-------EITQEYDQHLGAVNTITFVDNNRRFV 442 (587)
Q Consensus 373 ~~i~~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-------~~~~~~~~h~~~I~~i~~sp~~~~l~ 442 (587)
..+.. +..+..+..+...........++..+.+|.|+...+..- .....+.. .+.+..+........|+
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~il 161 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLL 161 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEECTTCEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEecCCCEEE
Confidence 22211 122222222222221123468999999999998876432 11222332 35566666666667888
Q ss_pred EEECCCCEEEEECC--CCe-------EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc----cce
Q 007855 443 TSSDDKSLRVWEFG--IPV-------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKR 509 (587)
Q Consensus 443 s~s~Dg~I~iwd~~--~~~-------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~----~~~ 509 (587)
..+..|.+..+... .-. -...+.......|.++...+.+.+|+..+..|.++.-.+........ ...
T Consensus 162 l~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 162 LVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence 88999998888776 211 11222223445677777666677899999999998887654222111 001
Q ss_pred ecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCee-------EEEEec-CCCCEEEEEEcCCCCCEEEEEECCC
Q 007855 510 FAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKV-------FRTLKC-HEGVCIGCEWHPLEQSKVATCGWDG 581 (587)
Q Consensus 510 ~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~-------~~~l~~-h~~~V~~v~~sp~~~~~l~s~g~DG 581 (587)
+.-......+..+....+...|+..+.+|.+.-++...-.. +.-++. ....|.++...+.+...+.+.+.+|
T Consensus 242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g 321 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG 321 (327)
T ss_dssp SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence 11000012343444444455677777888887777643211 111111 2346777777664455677776665
No 356
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=80.00 E-value=46 Score=32.40 Aligned_cols=190 Identities=10% Similarity=0.034 Sum_probs=111.1
Q ss_pred CcEEEEEeCCCeEEEEecCCC------CeeeE--EEcccCCceeeEEEecCCCeEEEEeCCCeEEEEECC---CC-----
Q 007855 309 GHLILSAGMDTKVKIWDVFNS------GKCMR--TYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTE---TG----- 372 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~------~~~~~--~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~---t~----- 372 (587)
..++++.+.+|.|+--.+..- +.-+. .+. -.+.+..+........++..+..|.++-.... ..
T Consensus 8 e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~~~ 86 (312)
T 1suu_A 8 ENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRASK 86 (312)
T ss_dssp CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC------
T ss_pred CCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCccCC
Confidence 568888999999998866211 01111 112 23445555555566678888888887766543 11
Q ss_pred -cE---EEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-------CcEEEEEccCCCCeeEEEEecCCCEE
Q 007855 373 -QV---IRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDNNRRF 441 (587)
Q Consensus 373 -~~---i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-------~~~~~~~~~h~~~I~~i~~sp~~~~l 441 (587)
.. ...+..+.....+...........++..+..|.++...+.. |.....+.. .+.+..+........+
T Consensus 87 G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~-~d~lv~~~~~~~~~~i 165 (312)
T 1suu_A 87 GQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLND-KDFVTSAEIVFKDEKV 165 (312)
T ss_dssp -CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCT-TCCEEEEEEECTTCEE
T ss_pred CcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCC-CCEEEEEEEeCCCCEE
Confidence 10 00122222222222221111235678889999999887642 222222333 4567777666666788
Q ss_pred EEEECCCCEEEEECCC-------CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCC
Q 007855 442 VTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRE 500 (587)
Q Consensus 442 ~s~s~Dg~I~iwd~~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~ 500 (587)
+..+..|.+..+.... ..-++.+.......+..+....++..|++.+..|.+..+.+..
T Consensus 166 ~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 166 ICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 8999999999888643 1122223223345566666655667788999999999988754
No 357
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=79.11 E-value=46 Score=31.81 Aligned_cols=205 Identities=7% Similarity=0.000 Sum_probs=112.5
Q ss_pred EEEEcCCC---CCeEEEEEccCCCcEEEEEeCCCeEEEEecC--CCCeeeEEEcccCCceeeEEEec--CCCeEEEEeCC
Q 007855 289 VHTWSGHT---KGVSAIRFFPKYGHLILSAGMDTKVKIWDVF--NSGKCMRTYMGHSKAVRDISFCN--DGTKFLTASYD 361 (587)
Q Consensus 289 i~tl~gH~---~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~--~~~~~~~~~~~h~~~V~~l~fs~--dg~~l~s~s~D 361 (587)
++..+||. +.+..+..... .+.|+.-+..|.++--.++ ....... +......|..+.. . +..+++.++.+
T Consensus 13 ir~~~g~~~~gD~~~~~~~~~t-~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~ 89 (276)
T 3no0_A 13 IIPVEELPLEKAPVVNILRVPF-TEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKK 89 (276)
T ss_dssp EEEGGGCCSSCCCEEEEEEEET-TSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETT
T ss_pred eeeccCCCCCCCeEEEEEEECC-CCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCC
Confidence 33444542 35555555554 4455566667877653321 1111100 1223455666644 4 56789999999
Q ss_pred CeEEEEECCCCc----EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC---------CcEEEEEccCCCC
Q 007855 362 KNIKYWDTETGQ----VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT---------KEITQEYDQHLGA 428 (587)
Q Consensus 362 g~I~vWd~~t~~----~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t---------~~~~~~~~~h~~~ 428 (587)
|.|+...+..-. -+..+........+....... ...++..+..|.+..+.... |.....+. ....
T Consensus 90 G~iKr~~l~~~~~~~~G~~~i~lkegD~l~~~~~~~~-~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~ 167 (276)
T 3no0_A 90 GYVKKIPLAEFEYKAQGMPIIKLTEGDEVVSIASSVD-ETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDE 167 (276)
T ss_dssp SEEEEEEGGGTTTCSTTEECSCCCTTCCEEEEEECCS-SCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCC
T ss_pred CEEEEEEHHHhhhhcCCeEEEecCCCCEEEEEEEeCC-CCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCE
Confidence 999999875432 111222222222222222222 23677888889988886431 11211222 2356
Q ss_pred eeEEEEecCCCEEEEEECCCCEEEEECCC-------CeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEE--EEcC
Q 007855 429 VNTITFVDNNRRFVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILI--YSTR 499 (587)
Q Consensus 429 I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~i--wd~~ 499 (587)
|..+...+++..++..+..|.++...+.. +.-+..+ .....+..+........++..+.+|.+.. ++..
T Consensus 168 vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 168 TSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 77776666777899999999999988632 1222223 23334444444344456777788888877 7764
Q ss_pred C
Q 007855 500 E 500 (587)
Q Consensus 500 ~ 500 (587)
.
T Consensus 246 ~ 246 (276)
T 3no0_A 246 D 246 (276)
T ss_dssp G
T ss_pred H
Confidence 3
No 358
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=78.85 E-value=57 Score=32.81 Aligned_cols=188 Identities=7% Similarity=-0.025 Sum_probs=100.3
Q ss_pred CeEEEEECCCC--cEEEEeecCCc-------ceEEEEc---cC--CCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCC
Q 007855 362 KNIKYWDTETG--QVIRTFSTGKI-------PYVVKLN---PD--DDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLG 427 (587)
Q Consensus 362 g~I~vWd~~t~--~~i~~~~~~~~-------~~~~~~~---~~--~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~ 427 (587)
-.|.+||+.++ +.++++..... ...+.+. +. .......++=...+.|.++|+.+++.-+.+..+
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 36888999999 99988876432 1233443 11 112233344445788999999999877765321
Q ss_pred CeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCC----CCEEEEEECCCeEEEEEcCC---
Q 007855 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPN----TNWLAAQSLDNQILIYSTRE--- 500 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~----g~~l~~~s~dg~I~iwd~~~--- 500 (587)
|.|+....++ -+|.-.- ....+..|+++|+ ++.|..+...+. ++|.+.+
T Consensus 201 ------~~pd~~~~~~--i~G~~~~---------------~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L 256 (381)
T 3q6k_A 201 ------FKAERPTKFD--YGGKEYE---------------FKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKEL 256 (381)
T ss_dssp ------GSCCSCEEEE--ETTEEEE---------------ECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHH
T ss_pred ------CccccCcceE--ECCEEeE---------------eccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHh
Confidence 2333111111 1121111 1346888999997 778887776652 3444322
Q ss_pred --ceeecccceeccccc-ccceEEEEEc-CCCCEEEEEcCCCcEEEEeCCC-C---eeEEEEe-cC-CCCEEEEEEcCCC
Q 007855 501 --RFQLNKKKRFAGHIV-AGYACQVNFS-PDGRFVMSGDGEGKCWFWDWKS-C---KVFRTLK-CH-EGVCIGCEWHPLE 570 (587)
Q Consensus 501 --~~~~~~~~~~~~~~~-~~~i~~l~~s-pdg~~L~sgs~dG~I~vwd~~t-~---~~~~~l~-~h-~~~V~~v~~sp~~ 570 (587)
.......+ ..|... ......+++. .+|.++++--....|..|+..+ . .....+. .. -.-+.++.+.+ +
T Consensus 257 ~~~~~~~~v~-~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~-~ 334 (381)
T 3q6k_A 257 KQKGGKLNPE-LLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDS-K 334 (381)
T ss_dssp SSTTCCCCCE-EEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECT-T
T ss_pred hCcchhhceE-EeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECC-C
Confidence 11111111 111111 1223346675 6787777777888999999865 1 1222222 11 12467777766 4
Q ss_pred CCEEEEE
Q 007855 571 QSKVATC 577 (587)
Q Consensus 571 ~~~l~s~ 577 (587)
+.+.++.
T Consensus 335 g~Lwv~s 341 (381)
T 3q6k_A 335 GGLWFMS 341 (381)
T ss_dssp SCEEEEE
T ss_pred CeEEEEE
Confidence 4444443
No 359
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=77.50 E-value=1e+02 Score=35.08 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=30.4
Q ss_pred ceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc
Q 007855 471 SMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK 506 (587)
Q Consensus 471 ~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~ 506 (587)
.+.+++..++..++++-+.|+++++|++.++.++..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t 272 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVET 272 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEee
Confidence 466777888889999999999999999998876544
No 360
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=75.27 E-value=63 Score=31.42 Aligned_cols=193 Identities=9% Similarity=0.039 Sum_probs=106.2
Q ss_pred cCCCeEEEEeCCCeEEEEECCCCc-------EEEEee--cCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCC---CC-
Q 007855 350 NDGTKFLTASYDKNIKYWDTETGQ-------VIRTFS--TGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMN---TK- 416 (587)
Q Consensus 350 ~dg~~l~s~s~Dg~I~vWd~~t~~-------~i~~~~--~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~---t~- 416 (587)
++..++++.+.+|.|+--.+..-. -+..+. .+.....+..... ...++..+..|.++-+... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~---~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNT---HDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCC--
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECC---CCEEEEEECCCeEEEEEHHHCCCCC
Confidence 456678888999999887664321 121222 2222222222221 1357777888887766542 21
Q ss_pred -----cE---EEEEccCCCCeeEEEEec---CCCEEEEEECCCCEEEEECCCCe-----EEEEeecCCCcceeEEEEeCC
Q 007855 417 -----EI---TQEYDQHLGAVNTITFVD---NNRRFVTSSDDKSLRVWEFGIPV-----VIKYISEPHMHSMPSISLHPN 480 (587)
Q Consensus 417 -----~~---~~~~~~h~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~~~~~-----~~~~~~~~~~~~i~~i~~sp~ 480 (587)
.. ...+. ....|.++...+ +..+|+..+..|.++...+.... -+..+.......+..+.....
T Consensus 83 r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~ 161 (312)
T 1suu_A 83 RASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFK 161 (312)
T ss_dssp -----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECT
T ss_pred ccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCC
Confidence 10 00111 223455554443 46778899999999988874321 112222223455666666555
Q ss_pred CCEEEEEECCCeEEEEEcCCceeecc-cceeccc--ccccceEEEEEcCCCCEEEEEcCCCcEEEEeCC
Q 007855 481 TNWLAAQSLDNQILIYSTRERFQLNK-KKRFAGH--IVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWK 546 (587)
Q Consensus 481 g~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~~--~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~ 546 (587)
...++..+.+|.+..+....-..... ....... .....+..+..-.++..|++.+..|.+....+.
T Consensus 162 ~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~ 230 (312)
T 1suu_A 162 DEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMS 230 (312)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGG
T ss_pred CCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHH
Confidence 67888999999999998754211111 0000000 012345555555566778889999999988874
No 361
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=74.96 E-value=66 Score=31.50 Aligned_cols=235 Identities=9% Similarity=-0.030 Sum_probs=125.0
Q ss_pred CcEEEEEeCCCeEEEEecC---CCCeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC---C------CCcEEE
Q 007855 309 GHLILSAGMDTKVKIWDVF---NSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---E------TGQVIR 376 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~---~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~---~------t~~~i~ 376 (587)
..++++.+.+|.|+--.+. ..+.....+. -.+.+..+........|+..+..|.+.-... . .|.++.
T Consensus 5 e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~i~ 83 (323)
T 1wp5_A 5 EDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQHIA 83 (323)
T ss_dssp CEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEEGG
T ss_pred CcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcChh
Confidence 5678889999999877652 0011111122 2344555555555667777777887665543 2 122211
Q ss_pred E---eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC--------CcEEEEEccCCCCeeEEEEecCCCEEEEEE
Q 007855 377 T---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT--------KEITQEYDQHLGAVNTITFVDNNRRFVTSS 445 (587)
Q Consensus 377 ~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t--------~~~~~~~~~h~~~I~~i~~sp~~~~l~s~s 445 (587)
. +..+..+..+...........++..+.+|.++...+.. +.....+.. .+.+..+........++..+
T Consensus 84 ~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e-~d~lv~~~~~~~~~~i~l~T 162 (323)
T 1wp5_A 84 NIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKN-DDQVVDVHLTDGMNELFLVT 162 (323)
T ss_dssp GTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCT-TCCEEEEEEECSCSEEEEEE
T ss_pred hccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCC-CCEEEEEEEeCCCCEEEEEe
Confidence 1 22222222221112111234688889999999887641 222222332 25666666666667788889
Q ss_pred CCCCEEEEECCC-------CeEEEEeecCCCcceeEEEEeCCCC-EEEEEECCCeEEEEEcCCceeec-------cccee
Q 007855 446 DDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTN-WLAAQSLDNQILIYSTRERFQLN-------KKKRF 510 (587)
Q Consensus 446 ~Dg~I~iwd~~~-------~~~~~~~~~~~~~~i~~i~~sp~g~-~l~~~s~dg~I~iwd~~~~~~~~-------~~~~~ 510 (587)
.+|.+..+.... ..-++.+.......|.++...+.+. .|++.+..|..+..++....... ..+.+
T Consensus 163 ~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~~~ 242 (323)
T 1wp5_A 163 HNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILREL 242 (323)
T ss_dssp TTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSCCC
T ss_pred CCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECeeec
Confidence 999988887632 1122223223445566665555455 78888999998887765421111 01111
Q ss_pred cccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 511 AGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 511 ~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
.. ....+..+....++..|+..+..|.+.-..+..
T Consensus 243 ~~--~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 243 KA--NPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SS--SCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred CC--CCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 11 111333232223345566677777776666543
No 362
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=74.73 E-value=73 Score=31.89 Aligned_cols=238 Identities=9% Similarity=0.047 Sum_probs=127.5
Q ss_pred ccCCCcEEEEEeCCCeEEEEecC-----C-C--CeeeEEEcccCCceeeEEEecCCCeEEEEeCCCeEEEEEC---C---
Q 007855 305 FPKYGHLILSAGMDTKVKIWDVF-----N-S--GKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDT---E--- 370 (587)
Q Consensus 305 sp~~g~~L~sgs~Dg~I~iWd~~-----~-~--~~~~~~~~~h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~---~--- 370 (587)
-|+ ..++++.+.+|.|+--.+. . . +.....+. ....+..+........|+..+..|.+.-+.. .
T Consensus 4 I~~-e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lk-e~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 4 IAP-EDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTK-EEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCC-CCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECS-CCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred ccC-CCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccC-CCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 455 6789999999999986541 1 1 12222232 3556666666666677777777887665543 2
Q ss_pred ---CCcEEEE---eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCC-------CcEEEEEccCCCCeeEEEEecC
Q 007855 371 ---TGQVIRT---FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNT-------KEITQEYDQHLGAVNTITFVDN 437 (587)
Q Consensus 371 ---t~~~i~~---~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t-------~~~~~~~~~h~~~I~~i~~sp~ 437 (587)
.|..+.. +..+..+..+...........|+.++..|.++...+.. +.....+.. .+.+..+.....
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~-~d~lv~v~~~~~ 160 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDE-GDALVGVALTDG 160 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCT-TCCEEEEEEECS
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCC-CCEEEEEEEeCC
Confidence 1222211 22222222222222112335799999999999887532 222222322 455666666666
Q ss_pred CCEEEEEECCCCEEEEECCCC-------eEEEEeecCCCcceeEEEEeC-------------------------------
Q 007855 438 NRRFVTSSDDKSLRVWEFGIP-------VVIKYISEPHMHSMPSISLHP------------------------------- 479 (587)
Q Consensus 438 ~~~l~s~s~Dg~I~iwd~~~~-------~~~~~~~~~~~~~i~~i~~sp------------------------------- 479 (587)
...++..+..|.+..+....- .-++.+.......|.++...+
T Consensus 161 ~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~ 240 (370)
T 3l6v_A 161 DRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV 240 (370)
T ss_dssp CCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-----------------------------
T ss_pred CceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence 667888888998888875321 112222222344555555444
Q ss_pred ----CCCEEEEEECCCeEEEEEcCCceeeccc----ceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeC
Q 007855 480 ----NTNWLAAQSLDNQILIYSTRERFQLNKK----KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDW 545 (587)
Q Consensus 480 ----~g~~l~~~s~dg~I~iwd~~~~~~~~~~----~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~ 545 (587)
.+..|++.+..|..+...+........- ..+.-....+.+..+.+..+...|+..+..|.+.-..+
T Consensus 241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v 314 (370)
T 3l6v_A 241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRG 314 (370)
T ss_dssp ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEG
T ss_pred ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeH
Confidence 4568899999999988876542211110 00111111233433333344455666666776665554
No 363
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=74.36 E-value=1.1e+02 Score=33.68 Aligned_cols=240 Identities=10% Similarity=0.097 Sum_probs=117.3
Q ss_pred eEEEE-EccCCCcEEEEEeC----CCeEEEEecCCCCeeeE-EEcccC-C------ceeeEEEecCCCeEEEE-------
Q 007855 299 VSAIR-FFPKYGHLILSAGM----DTKVKIWDVFNSGKCMR-TYMGHS-K------AVRDISFCNDGTKFLTA------- 358 (587)
Q Consensus 299 V~~l~-~sp~~g~~L~sgs~----Dg~I~iWd~~~~~~~~~-~~~~h~-~------~V~~l~fs~dg~~l~s~------- 358 (587)
...+. ++|++..++++-|. -..|+++|+ .+++.+. .+..-. . ....++|..+...+++.
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~-~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~~~~ 209 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDL-EKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHKNEI 209 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEET-TTTEECTTCSCCBCTTCCBCCEETCCEEEEETTEEEECCCCSTTCB
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEEC-CcCCcCCCCcccccccccccccccceeeEECCCEEEEEeCCCCCCc
Confidence 34444 78884444444333 356999999 6776652 111000 0 11345887444444432
Q ss_pred ---eCCCeEEEEECCCCc--EEEEeecCCcceEE--EEccCCCCC--cEEEEEeCC---CcEEEEeCCC--CcEEEEEcc
Q 007855 359 ---SYDKNIKYWDTETGQ--VIRTFSTGKIPYVV--KLNPDDDKQ--NILLAGMSD---KKIVQWDMNT--KEITQEYDQ 424 (587)
Q Consensus 359 ---s~Dg~I~vWd~~t~~--~i~~~~~~~~~~~~--~~~~~~~~~--~~l~sg~~d---g~I~iwD~~t--~~~~~~~~~ 424 (587)
++-..|+.|.+-+.. -...|........+ ....++... .++++.+.+ ..+.+.++.. ++.+ .+..
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ 288 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINM 288 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCS
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-Eeec
Confidence 123578888876652 23334333222222 223332211 244444322 4566666653 3322 2222
Q ss_pred CCCCeeEEEEecCCCEEEEE----------ECCCCEEEEECCCCe-------EEE-EeecCCCcceeEEEEeCCCCEEEE
Q 007855 425 HLGAVNTITFVDNNRRFVTS----------SDDKSLRVWEFGIPV-------VIK-YISEPHMHSMPSISLHPNTNWLAA 486 (587)
Q Consensus 425 h~~~I~~i~~sp~~~~l~s~----------s~Dg~I~iwd~~~~~-------~~~-~~~~~~~~~i~~i~~sp~g~~l~~ 486 (587)
... ..+..+..+.+++.. ...+.|.+.++..+. ... .+.......+..+.+..+ .++++
T Consensus 289 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~ 365 (711)
T 4hvt_A 289 PSD--ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLA 365 (711)
T ss_dssp CTT--CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEE
T ss_pred CCc--ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEE
Confidence 222 112334455554432 246779999987631 122 233334556788888865 56667
Q ss_pred EECCCe--EEEEEcCCce-eecccceecccccccceEEEEEcCCCCE-EEEEc---CCCcEEEEeCC
Q 007855 487 QSLDNQ--ILIYSTRERF-QLNKKKRFAGHIVAGYACQVNFSPDGRF-VMSGD---GEGKCWFWDWK 546 (587)
Q Consensus 487 ~s~dg~--I~iwd~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~-L~sgs---~dG~I~vwd~~ 546 (587)
...++. |.++++.++. .......+.. .+.+..+.+++++.. +++.+ .-+.+..+|+.
T Consensus 366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~---~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 366 TYDNVVAKVVTFTLENEQWTKPVVLKLPY---QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEETTEEEEEEECEETTEECCCEEECCCS---TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEECCEEEEEEEECCCCceEEEeccCCCC---CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 676764 5666665442 1111011211 133444566676654 44333 23568888876
No 364
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=73.56 E-value=1.1e+02 Score=33.53 Aligned_cols=225 Identities=9% Similarity=0.088 Sum_probs=113.7
Q ss_pred EecCCCeEEEE-eC----CCeEEEEECCCCcEEE-Eee-cCCc-------ceEEEEccCCCCCcEEEEE----------e
Q 007855 348 FCNDGTKFLTA-SY----DKNIKYWDTETGQVIR-TFS-TGKI-------PYVVKLNPDDDKQNILLAG----------M 403 (587)
Q Consensus 348 fs~dg~~l~s~-s~----Dg~I~vWd~~t~~~i~-~~~-~~~~-------~~~~~~~~~~~~~~~l~sg----------~ 403 (587)
++|++++++.+ |. -..|+++|+.+++.+. .|. .... -..++|...+ .++++. +
T Consensus 137 ~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~---~~~~~~~~~~~~~~~~~ 213 (711)
T 4hvt_A 137 CFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKD---TIIFNLVLHKNEITSSL 213 (711)
T ss_dssp CSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETT---EEEECCCCSTTCBCTTS
T ss_pred cCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCC---EEEEEeCCCCCCcCcCC
Confidence 77888876653 22 2479999999998763 122 1100 0233554221 233321 1
Q ss_pred CCCcEEEEeCCCCc--EEEEEccCCCCe-eEEEEecCCC-----EEEEEECC---CCEEEEECCCC-eEEEEeecCCCcc
Q 007855 404 SDKKIVQWDMNTKE--ITQEYDQHLGAV-NTITFVDNNR-----RFVTSSDD---KSLRVWEFGIP-VVIKYISEPHMHS 471 (587)
Q Consensus 404 ~dg~I~iwD~~t~~--~~~~~~~h~~~I-~~i~~sp~~~-----~l~s~s~D---g~I~iwd~~~~-~~~~~~~~~~~~~ 471 (587)
.-..|+.|.+-+.. -...+.+....+ .+...+++++ .+++.+.+ ..+.+.+...+ ..+..+..+....
T Consensus 214 ~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 293 (711)
T 4hvt_A 214 YPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSDAT 293 (711)
T ss_dssp SBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTTCE
T ss_pred CCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCcce
Confidence 12468888876642 233344333333 2344455555 34444423 34566665532 1233343333322
Q ss_pred eeEEEEeCCCCEEEEE----------ECCCeEEEEEcCCcee----ecccceecccccccceEEEEEcCCCCEEEEEcCC
Q 007855 472 MPSISLHPNTNWLAAQ----------SLDNQILIYSTRERFQ----LNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGE 537 (587)
Q Consensus 472 i~~i~~sp~g~~l~~~----------s~dg~I~iwd~~~~~~----~~~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~d 537 (587)
+..+..+.+++.. ...+.|.+.++.+... ......+-.+.....+..+.+..+ .++++...+
T Consensus 294 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~ 369 (711)
T 4hvt_A 294 ---LQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDN 369 (711)
T ss_dssp ---EEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEET
T ss_pred ---EeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEEC
Confidence 2334455544422 2467788888876421 011122112222455677888876 566777667
Q ss_pred Cc--EEEEeCCCCe-eEEE-EecC-CCCEEEEEEcCCCCCEEEEEEC
Q 007855 538 GK--CWFWDWKSCK-VFRT-LKCH-EGVCIGCEWHPLEQSKVATCGW 579 (587)
Q Consensus 538 G~--I~vwd~~t~~-~~~~-l~~h-~~~V~~v~~sp~~~~~l~s~g~ 579 (587)
|. |.++++.++. .... +... .+.+..+.+.+++..++++.+.
T Consensus 370 ~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss 416 (711)
T 4hvt_A 370 VVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIEN 416 (711)
T ss_dssp TEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEEC
T ss_pred CEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEec
Confidence 64 7788877765 2333 3222 2456666666655556666554
No 365
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=71.05 E-value=1.3e+02 Score=33.32 Aligned_cols=146 Identities=13% Similarity=0.112 Sum_probs=78.2
Q ss_pred CCeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-------CCceeeEEEecC-CCeEEEEeCCC-----e
Q 007855 297 KGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDISFCND-GTKFLTASYDK-----N 363 (587)
Q Consensus 297 ~~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fs~d-g~~l~s~s~Dg-----~ 363 (587)
+.|.+|+++|.+...++.++..+.|...+ ..++.-..+..+ ...|.+|++.|. ...++.+.... .
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~ 92 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA 92 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence 57999999998677778887777665554 345444444332 246999999984 34454443221 2
Q ss_pred EEEEECCCCcEEEEeecC----------CcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEcc------CCC
Q 007855 364 IKYWDTETGQVIRTFSTG----------KIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQ------HLG 427 (587)
Q Consensus 364 I~vWd~~t~~~i~~~~~~----------~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~------h~~ 427 (587)
..+...+.|+.-..+... .....+.+.|... ..++++...+.|.. ....++.-..+.. ...
T Consensus 93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~--~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNS--NEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEE--EEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTT
T ss_pred EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCC--CEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCC
Confidence 233344555544433321 0123466665432 45666664444322 2222332222221 124
Q ss_pred CeeEEEEecC-CCEEEEEECC
Q 007855 428 AVNTITFVDN-NRRFVTSSDD 447 (587)
Q Consensus 428 ~I~~i~~sp~-~~~l~s~s~D 447 (587)
.+..|.+.|. ...++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5788888874 3456666654
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=69.50 E-value=79 Score=30.09 Aligned_cols=204 Identities=10% Similarity=0.025 Sum_probs=110.3
Q ss_pred CCceeeEEEecCCCeEEEEeCCCeEEEE---ECCCCcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC
Q 007855 340 SKAVRDISFCNDGTKFLTASYDKNIKYW---DTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK 416 (587)
Q Consensus 340 ~~~V~~l~fs~dg~~l~s~s~Dg~I~vW---d~~t~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~ 416 (587)
.+.+..+.......+|+..+..|.++-- ++..+.....+..+.. ++.+.+.......++..+.+|.|+...+..-
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~~~e~--i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~ 100 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVSLKSREEK--IVGAFIREKFGNRLLLATKKGYVKKIPLAEF 100 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECCCSSTTCC--EEEEEEGGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccccCCCCCE--EEEEECCcCCCCEEEEEeCCCEEEEEEHHHh
Confidence 3456666555555567667777776643 3322211110322222 2222221103357899999999999876442
Q ss_pred c------EEEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-------CeEEEEeecCCCcceeEEEEeCCCCE
Q 007855 417 E------ITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-------PVVIKYISEPHMHSMPSISLHPNTNW 483 (587)
Q Consensus 417 ~------~~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-------~~~~~~~~~~~~~~i~~i~~sp~g~~ 483 (587)
. ....+. ..+.+..+........++..+..|.+..+.... ..-...+.......|..+...+++.+
T Consensus 101 ~~~~~G~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~~~~ 179 (276)
T 3no0_A 101 EYKAQGMPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNGEPY 179 (276)
T ss_dssp TTCSTTEECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESSCSE
T ss_pred hhhcCCeEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCCCCE
Confidence 1 111222 234566666665666888899999988887532 11112222233456667666666778
Q ss_pred EEEEECCCeEEEEEcCCceeeccc-ceecccccccceEEEEEcCCCCEEEEEcCCCcEEE--EeCC
Q 007855 484 LAAQSLDNQILIYSTRERFQLNKK-KRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWF--WDWK 546 (587)
Q Consensus 484 l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~v--wd~~ 546 (587)
++..+..|.+....+..-.....- +..........+..+....+...|+..+.+|.+.. ++..
T Consensus 180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp EEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred EEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 999999999998886542221110 00000011233333333334456677777888777 7654
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=68.21 E-value=1e+02 Score=30.82 Aligned_cols=230 Identities=10% Similarity=0.010 Sum_probs=120.9
Q ss_pred ecCCCeEEEEeCCCeEEEEECCC---------CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEe---CCC-
Q 007855 349 CNDGTKFLTASYDKNIKYWDTET---------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD---MNT- 415 (587)
Q Consensus 349 s~dg~~l~s~s~Dg~I~vWd~~t---------~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD---~~t- 415 (587)
-++..++++.+.+|.|+--.+.. +..-..+..+.....+.... .. ..++..+..|.++-+. +..
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~--t~-d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVN--TH-DTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEEC--TT-CEEEEEETTSEEEEEEGGGSCBC
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEec--CC-CEEEEEeCCCeEEEEEHHHCcCC
Confidence 45677899999999999765421 22223333333322222222 11 3466677778776654 332
Q ss_pred -----CcEEE---EEccCCCCeeEEEEec---CCCEEEEEECCCCEEEEECCCC-----eEEEEeecCCCcceeEEEEeC
Q 007855 416 -----KEITQ---EYDQHLGAVNTITFVD---NNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHP 479 (587)
Q Consensus 416 -----~~~~~---~~~~h~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~i~~i~~sp 479 (587)
|..+. .+. ....|.++.... .+.+|+.++..|.++...+... .-+..+.......+..+....
T Consensus 81 ~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~ 159 (370)
T 3l6v_A 81 GSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTD 159 (370)
T ss_dssp CTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEEC
T ss_pred CcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeC
Confidence 22111 122 335566665543 4568999999999999886421 112222222344555555555
Q ss_pred CCCEEEEEECCCeEEEEEcCCceeeccc-ceeccc--ccccceEEEEEcC------------------------------
Q 007855 480 NTNWLAAQSLDNQILIYSTRERFQLNKK-KRFAGH--IVAGYACQVNFSP------------------------------ 526 (587)
Q Consensus 480 ~g~~l~~~s~dg~I~iwd~~~~~~~~~~-~~~~~~--~~~~~i~~l~~sp------------------------------ 526 (587)
....|+..+..|.+..|....-...... ....+. .....+.++...+
T Consensus 160 ~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~ 239 (370)
T 3l6v_A 160 GDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVID 239 (370)
T ss_dssp SCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC----------------------------
T ss_pred CCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEeccccccccccccccccccccccccccccccc
Confidence 6678888999999988876432111110 000000 0112333343333
Q ss_pred -----CCCEEEEEcCCCcEEEEeCCCC-------eeEE--EEecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 527 -----DGRFVMSGDGEGKCWFWDWKSC-------KVFR--TLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 527 -----dg~~L~sgs~dG~I~vwd~~t~-------~~~~--~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
++.+|++.+..|..+...+..- +=+. .+....+.+..+.+.. +...|+..+..|.+
T Consensus 240 ~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~-~~d~i~liT~~G~~ 309 (370)
T 3l6v_A 240 VADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLG-STDEVMLISDGGTL 309 (370)
T ss_dssp -------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEEC-TTCEEEEEETTCCE
T ss_pred cccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeC-CCceEEEEcCCCeE
Confidence 4568999999999888876421 1122 2222334566655544 33455555666654
No 368
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=63.34 E-value=1.4e+02 Score=30.75 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=33.9
Q ss_pred CCeEEEEEccCCCc-EEEEEeCCCeEEEEecCCC--CeeeEEEc---------ccCCceeeEEEecC
Q 007855 297 KGVSAIRFFPKYGH-LILSAGMDTKVKIWDVFNS--GKCMRTYM---------GHSKAVRDISFCND 351 (587)
Q Consensus 297 ~~V~~l~~sp~~g~-~L~sgs~Dg~I~iWd~~~~--~~~~~~~~---------~h~~~V~~l~fs~d 351 (587)
..-..|+|.|+ +. .|+.+...|.|++++.... ...+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pd-G~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGD-GSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSS-SSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCC-CCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 34678999999 54 4555677899999975211 11222221 11356789999995
No 369
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=61.72 E-value=28 Score=40.76 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=33.8
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 380 (587)
.|.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 456677778889999999999999999999999988654
No 370
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=60.22 E-value=2e+02 Score=33.55 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 519 ACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 3446677888999999999999999999999888754
No 371
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=59.41 E-value=2.4e+02 Score=32.09 Aligned_cols=38 Identities=11% Similarity=-0.004 Sum_probs=33.2
Q ss_pred ceEEEEEcCCCCEEEEEcCCCcEEEEeCCCCeeEEEEe
Q 007855 518 YACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLK 555 (587)
Q Consensus 518 ~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~~~~~~l~ 555 (587)
.+.+++..++..+|++-+.|+++++|++.+++++.+..
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 45667888899999999999999999999999887754
No 372
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=58.19 E-value=1.4e+02 Score=28.89 Aligned_cols=228 Identities=7% Similarity=0.022 Sum_probs=118.0
Q ss_pred CCCeEEEEeCCCeEEEEECCCCcEEE-------E--eecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeC---CC---
Q 007855 351 DGTKFLTASYDKNIKYWDTETGQVIR-------T--FSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT--- 415 (587)
Q Consensus 351 dg~~l~s~s~Dg~I~vWd~~t~~~i~-------~--~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~---~t--- 415 (587)
+...+++.+.+|.|+--.+...+... . +..+.....+..... ...++..+..|.++-+.. ..
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~---~~~ll~fT~~G~~~~~~~~elp~~~~ 78 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANT---HDHILCFSSRGRVYSMKVYQLPEATR 78 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEET---TCEEEEEETTSEEEEEEGGGSCCCCS
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEhhHCcCCCC
Confidence 45578888899999877765432211 1 112222222222221 134777777787665543 32
Q ss_pred ---CcEEE---EEccCCCCeeEEEEe---cCCCEEEEEECCCCEEEEECCCC-----eEEEEeecCCCcceeEEEEeCCC
Q 007855 416 ---KEITQ---EYDQHLGAVNTITFV---DNNRRFVTSSDDKSLRVWEFGIP-----VVIKYISEPHMHSMPSISLHPNT 481 (587)
Q Consensus 416 ---~~~~~---~~~~h~~~I~~i~~s---p~~~~l~s~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~i~~i~~sp~g 481 (587)
|..+. .+. ....|.++... .++.+++..+..|.++-..+... .-+..+.......+..+......
T Consensus 79 ~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 79 GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGE 157 (307)
T ss_dssp SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTT
T ss_pred CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCC
Confidence 22111 121 33456666543 35668999999999999876421 11122221223555565555566
Q ss_pred CEEEEEECCCeEEEEEcCCceeecc-cceecc--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC---------e
Q 007855 482 NWLAAQSLDNQILIYSTRERFQLNK-KKRFAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC---------K 549 (587)
Q Consensus 482 ~~l~~~s~dg~I~iwd~~~~~~~~~-~~~~~~--~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~---------~ 549 (587)
..|+..+..|.+..+....-..... .....+ -.....+..+....++..|++.+..|.++-.++... .
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~ 237 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGV 237 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCE
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCE
Confidence 6788899999998888654211111 000000 011234555555555678888999999888876321 1
Q ss_pred eEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcE
Q 007855 550 VFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLI 583 (587)
Q Consensus 550 ~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I 583 (587)
....+..-.+.+..+.... +...|+..+.+|.+
T Consensus 238 ~~~~~~~~~~~lv~~~~v~-~~~~l~~~t~~g~~ 270 (307)
T 1zi0_A 238 ISIKVTERNGLVVGAVQVD-DCDQIMMITDAGTL 270 (307)
T ss_dssp ESSCCCTTTCSEEEEEEEC-TTCEEEEEESSCCE
T ss_pred EeeEecCCCCeEEEEEEeC-CCceEEEEcCCCcE
Confidence 1222222234565554443 33445566666654
No 373
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=57.64 E-value=1.4e+02 Score=29.05 Aligned_cols=230 Identities=11% Similarity=0.068 Sum_probs=118.0
Q ss_pred CeEEEEeCCCeEEEEECCC-------CcEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEE---eCCC------C
Q 007855 353 TKFLTASYDKNIKYWDTET-------GQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQW---DMNT------K 416 (587)
Q Consensus 353 ~~l~s~s~Dg~I~vWd~~t-------~~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iw---D~~t------~ 416 (587)
..+++.+.+|.|+--.+.+ ++-+..+..........+...... ..++.-+..|.++.. ++.. |
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~-d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G 82 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTH-DLILFFTTQGRVYRAKAYDLPEASRTARG 82 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETT-SEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCC-CEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence 3567777888888665322 111222222211111111111111 246666667766554 3332 2
Q ss_pred cEEEEE-c-cCCCCeeEEEEec---CCCEEEEEECCCCEEEEECCCCe-----EEEEeecCCCcceeEEEEeCCCCEEEE
Q 007855 417 EITQEY-D-QHLGAVNTITFVD---NNRRFVTSSDDKSLRVWEFGIPV-----VIKYISEPHMHSMPSISLHPNTNWLAA 486 (587)
Q Consensus 417 ~~~~~~-~-~h~~~I~~i~~sp---~~~~l~s~s~Dg~I~iwd~~~~~-----~~~~~~~~~~~~i~~i~~sp~g~~l~~ 486 (587)
..+..+ . .....|.++...+ +..++++.+..|.|+...+.... -+..+.......+..+........|+.
T Consensus 83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill 162 (327)
T 3uc1_A 83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL 162 (327)
T ss_dssp EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence 221111 1 1234566665544 57899999999999998865421 111222223445666656566678999
Q ss_pred EECCCeEEEEEcC--Cceeeccc-ceecc--cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-------eeEEEE
Q 007855 487 QSLDNQILIYSTR--ERFQLNKK-KRFAG--HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-------KVFRTL 554 (587)
Q Consensus 487 ~s~dg~I~iwd~~--~~~~~~~~-~~~~~--~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~-------~~~~~l 554 (587)
.+..|.+..+... .-...... ..... -.....|..+...+.+.+|+..+..|.++.-.+... +-+..+
T Consensus 163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~ 242 (327)
T 3uc1_A 163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTV 242 (327)
T ss_dssp EETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESS
T ss_pred EECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEE
Confidence 9999999988876 32111110 00000 011234555655566778999999999988876322 112222
Q ss_pred e--cCCCCEEEEEEcCCCCCEEEEEECCCcEE
Q 007855 555 K--CHEGVCIGCEWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 555 ~--~h~~~V~~v~~sp~~~~~l~s~g~DG~I~ 584 (587)
+ .-.+.+..+.... +...|+..+.+|.+.
T Consensus 243 ~l~~~~d~lv~~~~~~-~~~~i~l~T~~G~~i 273 (327)
T 3uc1_A 243 MYDRRRGRLVGALIVD-DDSELYAVTSGGGVI 273 (327)
T ss_dssp CCCTTTCSEEEEEEEC-TTCEEEEEEGGGCEE
T ss_pred EecCCCCeEEEEEEeC-CCccEEEEcCCCeEE
Confidence 2 2134455555444 344566666666643
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=57.62 E-value=1.5e+02 Score=29.36 Aligned_cols=231 Identities=10% Similarity=0.142 Sum_probs=117.6
Q ss_pred CcEEEEEeCCCeEEEEecCCCCe---------ee-EEEcc-cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC-----
Q 007855 309 GHLILSAGMDTKVKIWDVFNSGK---------CM-RTYMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG----- 372 (587)
Q Consensus 309 g~~L~sgs~Dg~I~iWd~~~~~~---------~~-~~~~~-h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~----- 372 (587)
....+.-..||.|..|=....++ .. ..+.. ....+..++++....+.+....||.|..|-....
T Consensus 62 ~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~ 141 (389)
T 3kci_A 62 EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGH 141 (389)
T ss_dssp TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCS
T ss_pred CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCC
Confidence 34555556788888885421111 11 11111 2234555677766677777888999999954321
Q ss_pred ----c--EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-c---------E-EEEEcc-CCCCeeEEEE
Q 007855 373 ----Q--VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-E---------I-TQEYDQ-HLGAVNTITF 434 (587)
Q Consensus 373 ----~--~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-~---------~-~~~~~~-h~~~I~~i~~ 434 (587)
. ....+..-....++.+..-. ...++-..+|.|+.|-.... + . ...+.. ....|..++.
T Consensus 142 g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~ 218 (389)
T 3kci_A 142 GNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIAC 218 (389)
T ss_dssp SSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEE
T ss_pred CCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEE
Confidence 0 11111111111233333322 34566678999999975421 1 1 111111 2234666665
Q ss_pred ecCCCEEEEEECCCCEEEEECCCC-----------eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCcee
Q 007855 435 VDNNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQ 503 (587)
Q Consensus 435 sp~~~~l~s~s~Dg~I~iwd~~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~ 503 (587)
.......+....+|.|+.|-.... .....+.......|..++.. ..+.++-..+|.|+.|-.....+
T Consensus 219 G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~Gq 296 (389)
T 3kci_A 219 GSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHR 296 (389)
T ss_dssp CCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGT
T ss_pred cCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCC
Confidence 433356777788999999975321 11122221122235555543 34555667899999997543211
Q ss_pred ec--------ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC
Q 007855 504 LN--------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS 547 (587)
Q Consensus 504 ~~--------~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t 547 (587)
+- ...... ......|..|+. .....++-..+|.|+.|-...
T Consensus 297 LG~g~~~~~~~P~~v~-~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~ 345 (389)
T 3kci_A 297 LGHGSDDHVRRPRQVQ-GLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND 345 (389)
T ss_dssp TCSSSCCCEEEEEECG-GGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred CCCCCCccccCCeEec-cCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence 10 000111 011123444443 344556667899999997653
No 375
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=51.89 E-value=2e+02 Score=28.84 Aligned_cols=187 Identities=8% Similarity=0.094 Sum_probs=96.1
Q ss_pred eEEEEecCCCC--eeeEEEcc------cCCceeeEEEe---cC----CCeEEEEe-CCCeEEEEECCCCcEEEEeecCCc
Q 007855 320 KVKIWDVFNSG--KCMRTYMG------HSKAVRDISFC---ND----GTKFLTAS-YDKNIKYWDTETGQVIRTFSTGKI 383 (587)
Q Consensus 320 ~I~iWd~~~~~--~~~~~~~~------h~~~V~~l~fs---~d----g~~l~s~s-~Dg~I~vWd~~t~~~i~~~~~~~~ 383 (587)
.|.+||+ .+. +.++++.- ....+.++.+. +. +.++..+. ...-|.|+|+.+++..+.....
T Consensus 124 kLv~~DL-~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~-- 200 (381)
T 3q6k_A 124 AIVAYDL-KQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT-- 200 (381)
T ss_dssp EEEEEES-SSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG--
T ss_pred eEEEEEC-CCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC--
Confidence 4555666 444 55555432 13457777777 21 23433333 4678999999999877765311
Q ss_pred ceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCCcEEEEEccCCCCeeEEEEecC----CCEEEEEECCCCEEEEECC---
Q 007855 384 PYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDN----NRRFVTSSDDKSLRVWEFG--- 456 (587)
Q Consensus 384 ~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~~~~~~~~~h~~~I~~i~~sp~----~~~l~s~s~Dg~I~iwd~~--- 456 (587)
+.++ .. ..+.. +|.-..| ...|..|+++|+ ++.|.-....+. ++|.+.
T Consensus 201 -----~~pd-~~-~~~~i---~G~~~~~--------------~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~ 255 (381)
T 3q6k_A 201 -----FKAE-RP-TKFDY---GGKEYEF--------------KAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKE 255 (381)
T ss_dssp -----GSCC-SC-EEEEE---TTEEEEE--------------CCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHH
T ss_pred -----Cccc-cC-cceEE---CCEEeEe--------------ccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHH
Confidence 2232 11 11111 1221111 256888999987 677776665542 344332
Q ss_pred --C---CeEEEEeecC-CCcceeEEEEe-CCCCEEEEEECCCeEEEEEcCC-ceeecccceecccccccceEEEEEcCCC
Q 007855 457 --I---PVVIKYISEP-HMHSMPSISLH-PNTNWLAAQSLDNQILIYSTRE-RFQLNKKKRFAGHIVAGYACQVNFSPDG 528 (587)
Q Consensus 457 --~---~~~~~~~~~~-~~~~i~~i~~s-p~g~~l~~~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg 528 (587)
. ...++.+... ....-..+++. .+|.++++--..+.|..|+..+ .........+.....-.+...+.+..+|
T Consensus 256 L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g 335 (381)
T 3q6k_A 256 LKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKG 335 (381)
T ss_dssp HSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTS
T ss_pred hhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCC
Confidence 1 1122222211 11233456675 5777777777889999999875 3211111111111123455566666666
Q ss_pred CEEEEE
Q 007855 529 RFVMSG 534 (587)
Q Consensus 529 ~~L~sg 534 (587)
.+.+..
T Consensus 336 ~Lwv~s 341 (381)
T 3q6k_A 336 GLWFMS 341 (381)
T ss_dssp CEEEEE
T ss_pred eEEEEE
Confidence 544443
No 376
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=48.16 E-value=3.1e+02 Score=29.99 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=38.5
Q ss_pred CeEEEEEccCCCcEEEEEeCCCeEEEEecCCCCeeeEEEccc-------CCceeeEEEec-CCCeEEEEe
Q 007855 298 GVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGH-------SKAVRDISFCN-DGTKFLTAS 359 (587)
Q Consensus 298 ~V~~l~~sp~~g~~L~sgs~Dg~I~iWd~~~~~~~~~~~~~h-------~~~V~~l~fs~-dg~~l~s~s 359 (587)
.|..|+++|.+...|+.+...+.|..++ ..++.-..+..+ ...|.+|+++| +...++.+.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~--D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD--PSTETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE--TTTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC--CCCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 7999999998667777777666655554 345444444332 24589999998 434444443
No 377
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=47.98 E-value=2.7e+02 Score=30.54 Aligned_cols=37 Identities=14% Similarity=0.372 Sum_probs=29.5
Q ss_pred CeeEEEEecCCCEEEEEECCCCEEEEECCCCeEEEEeec
Q 007855 428 AVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISE 466 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~ 466 (587)
.|.++.+ +..++++-+.|.++|+|++.++.++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3554444 467999999999999999999998876654
No 378
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=46.31 E-value=2.3e+02 Score=28.04 Aligned_cols=264 Identities=11% Similarity=0.107 Sum_probs=125.9
Q ss_pred cEEEEEeCCCeEEEEecCCCCee-------eEE---Ecc-cCCceeeEEEecCCCeEEEEeCCCeEEEEECCCC------
Q 007855 310 HLILSAGMDTKVKIWDVFNSGKC-------MRT---YMG-HSKAVRDISFCNDGTKFLTASYDKNIKYWDTETG------ 372 (587)
Q Consensus 310 ~~L~sgs~Dg~I~iWd~~~~~~~-------~~~---~~~-h~~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~------ 372 (587)
..++.-..||+|..|=....+++ ... +.. ....|..|+. ...+.+....||.|..|-....
T Consensus 11 ~~~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g 88 (389)
T 3kci_A 11 RENLYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCEALATLRPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIG 88 (389)
T ss_dssp ----------CEEEEEECTTSTTSSCSCSEEEEEEECHHHHHTCEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSS
T ss_pred ccceeECCCCeEEEeeCCCCccCCCCcCccccCCEecccccCCceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCC
Confidence 45555566788888855222221 111 000 1123444443 3445666678899999954321
Q ss_pred --c---EEEEeec--CCcceEEEEccCCCCCcEEEEEeCCCcEEEEeCCCC-----------cEEEEEccC-CCCeeEEE
Q 007855 373 --Q---VIRTFST--GKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTK-----------EITQEYDQH-LGAVNTIT 433 (587)
Q Consensus 373 --~---~i~~~~~--~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~~t~-----------~~~~~~~~h-~~~I~~i~ 433 (587)
. ....+.. ......+.+..- ....++-..+|.|+.|-.... .....+... ...|..|+
T Consensus 89 ~~~~~~~p~~v~~~~~~~~~~v~i~~G---~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va 165 (389)
T 3kci_A 89 GTESVSTPTLLESIQHVFIKKVAVNSG---GKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVA 165 (389)
T ss_dssp SSCCEEEEEECGGGTTSCEEEEEECTT---CSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEE
T ss_pred CcCCccCCEEcccccCCceeEEEECcC---CCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEE
Confidence 1 1111111 111223344332 234666678999999965421 011111111 12455555
Q ss_pred EecCCCEEEEEECCCCEEEEECCCC-----------eEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCce
Q 007855 434 FVDNNRRFVTSSDDKSLRVWEFGIP-----------VVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERF 502 (587)
Q Consensus 434 ~sp~~~~l~s~s~Dg~I~iwd~~~~-----------~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~ 502 (587)
.. ....+....+|.|+.|=.... .....+.......|..++......+.++-..+|.|+.|-.....
T Consensus 166 ~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~G 243 (389)
T 3kci_A 166 AG--GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYG 243 (389)
T ss_dssp EC--SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGG
T ss_pred eC--cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCC
Confidence 53 456667778999999975321 11222222233456666655434677777889999999754321
Q ss_pred eec--------ccceecccccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCCC-----------eeEEEEec-CCCCEE
Q 007855 503 QLN--------KKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSC-----------KVFRTLKC-HEGVCI 562 (587)
Q Consensus 503 ~~~--------~~~~~~~~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t~-----------~~~~~l~~-h~~~V~ 562 (587)
++- ...... ......+..++.. ..+.++-..+|.|+.|-.... .....+.. ....|.
T Consensus 244 qLG~g~~~~~~~p~~v~-~~~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~ 320 (389)
T 3kci_A 244 KLGRGGSDGCKVPMKID-SLTGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVI 320 (389)
T ss_dssp TTSSSSCCCEEEEEECG-GGTTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEE
T ss_pred CCCCCCCCCccccEEec-ccCCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEE
Confidence 110 000011 1111224444443 345555578899999965321 01111222 123566
Q ss_pred EEEEcCCCCCEEEEEECCCcEEEc
Q 007855 563 GCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 563 ~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
.|+.. ....+....||.|..|
T Consensus 321 ~ia~G---~~h~~al~~~G~v~~w 341 (389)
T 3kci_A 321 AIATG---SLHCVCCTEDGEVYTW 341 (389)
T ss_dssp EEEEC---SSEEEEEETTCCEEEE
T ss_pred EEEec---cCeEEEECCCCCEEEe
Confidence 66653 3456666788888888
No 379
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=45.30 E-value=2.2e+02 Score=27.59 Aligned_cols=230 Identities=9% Similarity=0.006 Sum_probs=117.1
Q ss_pred cCCCeEEEEeCCCeEEEEECCCC----cEEEEeecCCcceEEEEccCCCCCcEEEEEeCCCcEEEEeC---CC------C
Q 007855 350 NDGTKFLTASYDKNIKYWDTETG----QVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDM---NT------K 416 (587)
Q Consensus 350 ~dg~~l~s~s~Dg~I~vWd~~t~----~~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~I~iwD~---~t------~ 416 (587)
++...+++.+.+|.|+--.+... ..-..+..+.....+..... ...++..+..|.++-+.. .. |
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D~l~~~~~~~t---~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTDRLLAMLEMNT---KDVLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTCCEEEEEEEET---TSEEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCCEEEEEEEECC---CCEEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 45567888888888887654311 00011122222222222221 134777777787665543 22 2
Q ss_pred cEEEE-Ec-cCCCCeeEEEEecC---CCEEEEEECCCCEEEEECCC------CeEEEEeecCCCcceeEEEEeCCCCEEE
Q 007855 417 EITQE-YD-QHLGAVNTITFVDN---NRRFVTSSDDKSLRVWEFGI------PVVIKYISEPHMHSMPSISLHPNTNWLA 485 (587)
Q Consensus 417 ~~~~~-~~-~h~~~I~~i~~sp~---~~~l~s~s~Dg~I~iwd~~~------~~~~~~~~~~~~~~i~~i~~sp~g~~l~ 485 (587)
..+.. +. .....|.++...++ +.+++..+..|.++...+.. ..-+..+.......+..+........|+
T Consensus 80 ~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~ 159 (323)
T 1wp5_A 80 QHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELF 159 (323)
T ss_dssp EEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEE
T ss_pred cChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEE
Confidence 21111 11 12334666544443 56899999999999988742 1122222222335565655555667888
Q ss_pred EEECCCeEEEEEcCCceeecc-cceeccc--ccccceEEEEEcCCCC-EEEEEcCCCcEEEEeCCC-------CeeEEEE
Q 007855 486 AQSLDNQILIYSTRERFQLNK-KKRFAGH--IVAGYACQVNFSPDGR-FVMSGDGEGKCWFWDWKS-------CKVFRTL 554 (587)
Q Consensus 486 ~~s~dg~I~iwd~~~~~~~~~-~~~~~~~--~~~~~i~~l~~spdg~-~L~sgs~dG~I~vwd~~t-------~~~~~~l 554 (587)
..+.+|.+..|....-..... .....+. .....+..+..-+++. .|++.+..|..+..++.. ++=+..+
T Consensus 160 l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~ 239 (323)
T 1wp5_A 160 LVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVIL 239 (323)
T ss_dssp EEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECS
T ss_pred EEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECe
Confidence 999999999998754211111 0000000 0123344554434445 788888899888777643 1212222
Q ss_pred e---cCCCCEEEE-EEcCCCCCEEEEEECCCcEE
Q 007855 555 K---CHEGVCIGC-EWHPLEQSKVATCGWDGLIK 584 (587)
Q Consensus 555 ~---~h~~~V~~v-~~sp~~~~~l~s~g~DG~I~ 584 (587)
+ .....+..+ .+.+ ...|+..+..|.+.
T Consensus 240 ~~~~~~~~~l~~~~~v~~--~~~i~~it~~g~~i 271 (323)
T 1wp5_A 240 RELKANPHRISGFVVAQD--SDTIYLQTEKSFIE 271 (323)
T ss_dssp CCCSSSCCCEEEEEEECT--TCEEEEEETTSCEE
T ss_pred eecCCCCceEEEEEEeCC--CCeEEEEeCCCeEE
Confidence 2 222245543 3433 34566666666643
No 380
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.49 E-value=54 Score=35.18 Aligned_cols=60 Identities=13% Similarity=0.240 Sum_probs=43.7
Q ss_pred CeeEEEEecCCCEEEEEECC------------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEE
Q 007855 428 AVNTITFVDNNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQ 487 (587)
Q Consensus 428 ~I~~i~~sp~~~~l~s~s~D------------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~ 487 (587)
..-.|+|++.|++++....+ ..+.+.+..+++..+.+..+....++.++|+|+++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 34568999999866655432 1355556666777777777778899999999999887765
No 381
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=43.26 E-value=3.7e+02 Score=29.61 Aligned_cols=147 Identities=7% Similarity=0.039 Sum_probs=72.3
Q ss_pred CCceeeEEEecC-CCeEEEEeCCCeEEEEECCCCcEEEEeecC--------CcceEEEEccCCCCCcEEEEEeCCCc---
Q 007855 340 SKAVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMSDKK--- 407 (587)
Q Consensus 340 ~~~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~l~sg~~dg~--- 407 (587)
...|.+|+++|. ...+++++..+.|...+ +.|+.-..+... .....+.+.+... ..++++.....
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~--~~i~~~~g~~~~~~ 90 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNP--DRLYLAQGRYVGDE 90 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEE--EEEEEEECSCTTSS
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCC--CEEEEEeCccCCCc
Confidence 468999999984 45677777667665554 344443333321 1244555655322 44555543311
Q ss_pred -EEEE-eCCCCcEEEEEccC-------C--CCeeEEEEecCC-CEEEEEECCCCEEEEECCCCeEEEEeec-----CCCc
Q 007855 408 -IVQW-DMNTKEITQEYDQH-------L--GAVNTITFVDNN-RRFVTSSDDKSLRVWEFGIPVVIKYISE-----PHMH 470 (587)
Q Consensus 408 -I~iw-D~~t~~~~~~~~~h-------~--~~I~~i~~sp~~-~~l~s~s~Dg~I~iwd~~~~~~~~~~~~-----~~~~ 470 (587)
-.|| ....++.-..+... . ..+..|++.|.. ..++.+...+.|. ...+.++.-..+.. ....
T Consensus 91 ~~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~ 169 (789)
T 1sqj_A 91 WAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGI 169 (789)
T ss_dssp CCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTT
T ss_pred ccEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCC
Confidence 2233 33344332222110 1 135678888753 4555555344332 22222322222221 1124
Q ss_pred ceeEEEEeCC-CCEEEEEECC
Q 007855 471 SMPSISLHPN-TNWLAAQSLD 490 (587)
Q Consensus 471 ~i~~i~~sp~-g~~l~~~s~d 490 (587)
.+..+.++|. +..++++..+
T Consensus 170 ~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 170 GYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp CEEEEEECTTSTTCEEEEESS
T ss_pred CeEEEEECCCCCCEEEEEEcC
Confidence 5778888884 4566666654
No 382
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=40.89 E-value=81 Score=33.79 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=40.0
Q ss_pred EEEEcCCCCEEEEEcCC------------CcEEEEeCCCCeeEEEEecCC-CCEEEEEEcCCCCCEEEE
Q 007855 521 QVNFSPDGRFVMSGDGE------------GKCWFWDWKSCKVFRTLKCHE-GVCIGCEWHPLEQSKVAT 576 (587)
Q Consensus 521 ~l~~spdg~~L~sgs~d------------G~I~vwd~~t~~~~~~l~~h~-~~V~~v~~sp~~~~~l~s 576 (587)
.|+|+|.|+++++-+.+ ..+.+.+..++++...+.++. ..++.++|+|+ ++.|+.
T Consensus 480 NL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspD-g~tlfv 547 (592)
T 3zwu_A 480 GLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPD-QKTLFV 547 (592)
T ss_dssp EEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTT-SSEEEE
T ss_pred ceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCC-CCEEEE
Confidence 48999999977765543 246666777888877777765 47999999994 444444
No 383
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=40.12 E-value=94 Score=33.13 Aligned_cols=62 Identities=13% Similarity=0.224 Sum_probs=43.9
Q ss_pred CCeeEEEEecCCCEEEEEECC------------CCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEE
Q 007855 427 GAVNTITFVDNNRRFVTSSDD------------KSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQS 488 (587)
Q Consensus 427 ~~I~~i~~sp~~~~l~s~s~D------------g~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s 488 (587)
.....|.|.++|.+.++.... ..|..++..++.....+..+....++.++|+|+++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 456789999999877744321 14666666667666555545567899999999999887764
No 384
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=39.15 E-value=40 Score=36.97 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=30.9
Q ss_pred ceeeEEEecCCCeEEEEeCCCeEEEEECCCCcEEEEeec
Q 007855 342 AVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFST 380 (587)
Q Consensus 342 ~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t~~~i~~~~~ 380 (587)
.|.++.+ +..++++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555554 477999999999999999999999988766
No 385
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=37.47 E-value=2.6e+02 Score=26.07 Aligned_cols=145 Identities=6% Similarity=-0.033 Sum_probs=77.3
Q ss_pred EEEEEeCCCcEEEEeCCCCcE-EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCC-------CeEEE-EeecCC
Q 007855 398 ILLAGMSDKKIVQWDMNTKEI-TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGI-------PVVIK-YISEPH 468 (587)
Q Consensus 398 ~l~sg~~dg~I~iwD~~t~~~-~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~-------~~~~~-~~~~~~ 468 (587)
++++.+.+|.|+--....... ...+. ....+..+........|+..+..|.++-+.... +..+. .+....
T Consensus 4 v~v~lT~~G~iKr~~~~~~~~~~~~lk-e~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~~ 82 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDIDAPGLNYK-AGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLPP 82 (256)
T ss_dssp EEEEEETTSEEEEEESSCCCSTTSCCC-TTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCCT
T ss_pred EEEEEeCCCEEEEeeCCcCCceeccCC-CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCCC
Confidence 456677778777655432110 00122 223444444444555667777788766554321 11110 111123
Q ss_pred CcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc----cceecccccccceEEEEEc-CCCCEEEEEcCCCcEEEE
Q 007855 469 MHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK----KKRFAGHIVAGYACQVNFS-PDGRFVMSGDGEGKCWFW 543 (587)
Q Consensus 469 ~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~----~~~~~~~~~~~~i~~l~~s-pdg~~L~sgs~dG~I~vw 543 (587)
...|.++....++.+|+..+..|.++...+........ ...+.. ...+..+... ..+..|+..+.+|.+..+
T Consensus 83 ~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~---~d~lv~~~~~~~~~~~i~l~T~~G~~lrf 159 (256)
T 1zvt_A 83 GATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPE---NAHVMPPVVIEDASDMLLAITQAGRMLMF 159 (256)
T ss_dssp TCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCT---TCCBCCCEECCCTTCEEEEEETTSEEEEE
T ss_pred CCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECC---CCEEEEEEEecCCCCEEEEEcCCCeEEEE
Confidence 34566664434567788999999999988754221110 011111 1233334444 345678889999999888
Q ss_pred eCC
Q 007855 544 DWK 546 (587)
Q Consensus 544 d~~ 546 (587)
...
T Consensus 160 ~~~ 162 (256)
T 1zvt_A 160 PVS 162 (256)
T ss_dssp EGG
T ss_pred EHH
Confidence 874
No 386
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=30.66 E-value=1.7e+02 Score=31.17 Aligned_cols=59 Identities=15% Similarity=0.179 Sum_probs=40.5
Q ss_pred eEEEEEcCCCCEEEEEcC------------CCcEEEEeCCCCeeEEEEecC-CCCEEEEEEcCCCCCEEEEE
Q 007855 519 ACQVNFSPDGRFVMSGDG------------EGKCWFWDWKSCKVFRTLKCH-EGVCIGCEWHPLEQSKVATC 577 (587)
Q Consensus 519 i~~l~~spdg~~L~sgs~------------dG~I~vwd~~t~~~~~~l~~h-~~~V~~v~~sp~~~~~l~s~ 577 (587)
...|.|.++|.+.++.+. ...|+.++..++++...+.+. ...++.++|+|++..++++.
T Consensus 478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 446999999988774432 225777777788877666654 35689999999554444443
No 387
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=29.45 E-value=5.8e+02 Score=27.71 Aligned_cols=231 Identities=10% Similarity=0.057 Sum_probs=103.9
Q ss_pred ceeeEEEecC-CCeEEEEeCCCeEEEEECCCCcEEEEeecC--------CcceEEEEccCCCCCcEEEEEeCC-------
Q 007855 342 AVRDISFCND-GTKFLTASYDKNIKYWDTETGQVIRTFSTG--------KIPYVVKLNPDDDKQNILLAGMSD------- 405 (587)
Q Consensus 342 ~V~~l~fs~d-g~~l~s~s~Dg~I~vWd~~t~~~i~~~~~~--------~~~~~~~~~~~~~~~~~l~sg~~d------- 405 (587)
.|..|+++|. ...|+++...+.|..++ ..|+.-..+... .....+.+.|... +.++++...
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~-D~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~--~~v~v~~~~~~~~~~~ 100 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWD-PSTETWIPLLDHFQMDEYSYYGVESIATDPVDP--NRVYIVAGMYTNDWLP 100 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEE-TTTTEEEECCTTCCGGGGGGGCEEEEEECSSST--TCEEEEECSCSSSSSC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeC-CCCCCEEECcCccCcccccCCCcceEEeCCCCC--CEEEEEeccccccccc
Confidence 7999999985 35566666566665554 234433333221 1234566666443 234444321
Q ss_pred CcEEEEeC-CCCcEEEEEc-cCC--------CCeeEEEEecCC-CEEEEEECC-CCEEEEECCCCeEEEEeec-C-----
Q 007855 406 KKIVQWDM-NTKEITQEYD-QHL--------GAVNTITFVDNN-RRFVTSSDD-KSLRVWEFGIPVVIKYISE-P----- 467 (587)
Q Consensus 406 g~I~iwD~-~t~~~~~~~~-~h~--------~~I~~i~~sp~~-~~l~s~s~D-g~I~iwd~~~~~~~~~~~~-~----- 467 (587)
+...||-. ..++.-..+. ... ..+.+|++.|.. ..++.+... ..|. ...+.+.....+.. +
T Consensus 101 ~~~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~gl~-~S~DgG~tW~~~~~~~~~~~~ 179 (737)
T 2cn3_A 101 NMGAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGNGLW-RSTDYGVTWSKVESFPNPGTY 179 (737)
T ss_dssp CCCEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTCCEE-EESSTTSSCEECTTCCCCCCC
T ss_pred CCccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCCcEE-EeCCCCcceecccCCCCCccc
Confidence 12334433 3333222211 110 124678898753 455555533 2222 22222222222211 0
Q ss_pred ----------CCcceeEEEEeCCC-------CEEEEEECCCeEEEEEc-CCceeecccceecccccccceEEEEEcCCCC
Q 007855 468 ----------HMHSMPSISLHPNT-------NWLAAQSLDNQILIYST-RERFQLNKKKRFAGHIVAGYACQVNFSPDGR 529 (587)
Q Consensus 468 ----------~~~~i~~i~~sp~g-------~~l~~~s~dg~I~iwd~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 529 (587)
....+..+.++|.. ..|.++..++.-.||-. ..+....... +.........+.++|++.
T Consensus 180 ~~~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~~---~~p~~~~~~~~~~~~~~~ 256 (737)
T 2cn3_A 180 IYDPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAVP---GQPKGLLPHHGVLASNGM 256 (737)
T ss_dssp BSCTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEECT---TCCCSSEEEEEEECTTSE
T ss_pred ccCcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEECC---CCCCcccceEEEECCCCe
Confidence 11236678887743 25666655543223433 3333332222 111111123456787766
Q ss_pred EEEEEc---------CCCcEEEEeCCCCeeEEEEec-CC------CCEEEEEEcCCCCCEEEEEECC
Q 007855 530 FVMSGD---------GEGKCWFWDWKSCKVFRTLKC-HE------GVCIGCEWHPLEQSKVATCGWD 580 (587)
Q Consensus 530 ~L~sgs---------~dG~I~vwd~~t~~~~~~l~~-h~------~~V~~v~~sp~~~~~l~s~g~D 580 (587)
++++.. ..+.|+..+- .+.....+.. +. -....|+++|.+...|+.++.+
T Consensus 257 l~~~~~d~~g~y~~~~~g~v~~s~d-~G~tW~~i~~~~~~~~~~~~~~~~i~v~p~~~~~ly~~~~~ 322 (737)
T 2cn3_A 257 LYITYGDTCGPYDGNGKGQVWKFNT-RTGEWIDITPIPYSSSDNRFCFAGLAVDRQNPDIIMVTSMN 322 (737)
T ss_dssp EEEEEESSCCSSCCSCCEEEEEEET-TTCCEEECCSSCTTSTTCCSEEEEEEECTTCTTCEEEEEEC
T ss_pred EEEEecCCCCccccccCceEEEEeC-CCCCEEEccCCCCCCcccccccccEEEcCCCCCEEEEEecc
Confidence 555432 2334444442 2222222221 11 1124688898777777666543
No 388
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=28.28 E-value=3.6e+02 Score=25.00 Aligned_cols=142 Identities=8% Similarity=-0.075 Sum_probs=75.1
Q ss_pred EEEEEECCCCEEEEECCCCeEEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCc-------eeecccceecc
Q 007855 440 RFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRER-------FQLNKKKRFAG 512 (587)
Q Consensus 440 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~-------~~~~~~~~~~~ 512 (587)
.+++.+.+|.|+--...... ...+.......+..+........|+..+..|.++-+....- ..+.....+.
T Consensus 4 v~v~lT~~G~iKr~~~~~~~-~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~r~~G~~i~~~i~L~- 81 (256)
T 1zvt_A 4 VTIVLSQMGWVRSAKGHDID-APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSARGQGEPLTGKLTLP- 81 (256)
T ss_dssp EEEEEETTSEEEEEESSCCC-STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCSSSCCEEGGGTCCCC-
T ss_pred EEEEEeCCCEEEEeeCCcCC-ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCcCCCCeEeeeeecCC-
Confidence 45666777777655543211 00011112334444444445556777788888777654321 1110111111
Q ss_pred cccccceEEEEEcCCCCEEEEEcCCCcEEEEeCCC-------CeeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEE
Q 007855 513 HIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKS-------CKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKY 585 (587)
Q Consensus 513 ~~~~~~i~~l~~spdg~~L~sgs~dG~I~vwd~~t-------~~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~i 585 (587)
....|..+....++.+|+..+..|.++...+.. +.....++.. +.+..+...+.+...|+..+.+|.+..
T Consensus 82 --~~e~Iv~~~~~~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~-d~lv~~~~~~~~~~~i~l~T~~G~~lr 158 (256)
T 1zvt_A 82 --PGATVDHMLMESDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPEN-AHVMPPVVIEDASDMLLAITQAGRMLM 158 (256)
T ss_dssp --TTCCEEEEECCCTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTT-CCBCCCEECCCTTCEEEEEETTSEEEE
T ss_pred --CCCEEEEEEEeCCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCC-CEEEEEEEecCCCCEEEEEcCCCeEEE
Confidence 123455553334567888999999999988732 3334444422 345555454224457888888887654
Q ss_pred c
Q 007855 586 W 586 (587)
Q Consensus 586 W 586 (587)
+
T Consensus 159 f 159 (256)
T 1zvt_A 159 F 159 (256)
T ss_dssp E
T ss_pred E
Confidence 3
No 389
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=28.01 E-value=4.6e+02 Score=26.03 Aligned_cols=231 Identities=10% Similarity=-0.001 Sum_probs=113.9
Q ss_pred CceeeEEEecCCCeEEEEeCCCeEEEEECCC-Cc------------EEEEeecCCcceEEEEccCCCCCcEEEEEeCCCc
Q 007855 341 KAVRDISFCNDGTKFLTASYDKNIKYWDTET-GQ------------VIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKK 407 (587)
Q Consensus 341 ~~V~~l~fs~dg~~l~s~s~Dg~I~vWd~~t-~~------------~i~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~ 407 (587)
..|..|+. .+.+.+....||.|..|-... ++ ....+.... .++.+..-. ...++-..+|.
T Consensus 75 ~~v~~va~--G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~--~i~~va~G~---~hs~al~~~G~ 147 (423)
T 3mvd_K 75 PDAVDISA--GGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPG--KALCISAGD---SHSACLLEDGR 147 (423)
T ss_dssp SSEEEEEE--CSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSS--CEEEEEECS---SEEEEEETTSC
T ss_pred CCceEEee--CCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCC--CEEEEEcCc---CeEEEEeCCCe
Confidence 34655554 455677777899999996432 11 001111111 233333321 34556678999
Q ss_pred EEEEeC--CC-CcE---------EEEEccCCCCeeEEEEecCCCEEEEEECCCCEEEEECCCCe----------------
Q 007855 408 IVQWDM--NT-KEI---------TQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPV---------------- 459 (587)
Q Consensus 408 I~iwD~--~t-~~~---------~~~~~~h~~~I~~i~~sp~~~~l~s~s~Dg~I~iwd~~~~~---------------- 459 (587)
|+.|-. .. +++ ..........|..|+.. ....+.-..+|.|+.|=....-
T Consensus 148 v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~ 225 (423)
T 3mvd_K 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG--ADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRR 225 (423)
T ss_dssp EEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTT
T ss_pred EEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC--CCeEEEEecCCeEEEeeCCcCCccCCCccccccccccc
Confidence 999975 22 221 11111123356666653 4566667789999999643210
Q ss_pred ------EEEEeecCCCcceeEEEEeCCCCEEEEEECCCeEEEEEcCCceeecc-----ccee-cccccccceEEEEEcCC
Q 007855 460 ------VIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNK-----KKRF-AGHIVAGYACQVNFSPD 527 (587)
Q Consensus 460 ------~~~~~~~~~~~~i~~i~~sp~g~~l~~~s~dg~I~iwd~~~~~~~~~-----~~~~-~~~~~~~~i~~l~~spd 527 (587)
....+.......|..++.... ..++.-+.++.|+.|-.....++.. ...+ +-......|..|+. .
T Consensus 226 ~~~~~~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G 302 (423)
T 3mvd_K 226 GKRDLLRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--G 302 (423)
T ss_dssp TTTTTSSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--C
T ss_pred ccccccCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--c
Confidence 011111122334555554422 2233335788999997543221111 0000 00000123433433 3
Q ss_pred CCEEEEEcCCCcEEEEeCCCC------------eeEEEEecCCCCEEEEEEcCCCCCEEEEEECCCcEEEc
Q 007855 528 GRFVMSGDGEGKCWFWDWKSC------------KVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYW 586 (587)
Q Consensus 528 g~~L~sgs~dG~I~vwd~~t~------------~~~~~l~~h~~~V~~v~~sp~~~~~l~s~g~DG~I~iW 586 (587)
..+.++-..+|.|+.|-.... .....+..-...|..|+... ...+....||.|..|
T Consensus 303 ~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~---~hs~alt~~G~v~~w 370 (423)
T 3mvd_K 303 QHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE---VCSYAVTIDGKLYSW 370 (423)
T ss_dssp SSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET---TEEEEEETTSCEEEE
T ss_pred cCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC---CeEEEEcCCCCEEEE
Confidence 445566677899999965321 11122222233677777643 345555788998888
No 390
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: b.42.2.1 PDB: 2f2f_A
Probab=23.71 E-value=1.9e+02 Score=26.15 Aligned_cols=96 Identities=10% Similarity=0.147 Sum_probs=57.5
Q ss_pred CCeEEEEecCCCCeeeEEEcccCCceeeEEEecCCCeEEE-EeCCCeEEEEECCCCcEEEEeecCCcceEEEEccCCC--
Q 007855 318 DTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLT-ASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDD-- 394 (587)
Q Consensus 318 Dg~I~iWd~~~~~~~~~~~~~h~~~V~~l~fs~dg~~l~s-~s~Dg~I~vWd~~t~~~i~~~~~~~~~~~~~~~~~~~-- 394 (587)
...|.||.+ ..+.-+..|..-. +..|-....+-+. .-.+|+|++-+..++.|+.....+ . +....+..
T Consensus 68 g~~lt~Wa~-~~~nw~wgY~~~d----s~~FG~~r~W~i~~~~p~G~VqFvN~~TgtCL~ay~nG--v--v~~~C~~s~~ 138 (206)
T 1sr4_A 68 GALLTVWAL-AKRNWLWAYPNIY----SQDFGNIRNWKMEPGKHREYFRFVNQSLGTCVEAYGNG--L--IHDICSLDKL 138 (206)
T ss_dssp SEEEEECSC-STTCBEEEEEGGG----CGGGGGGGCEEEEECSSTTCEEEEETTTCCEEEEETTE--E--EEECCCTTCG
T ss_pred CCEEEEEec-CCCcceeeecccc----cCCcCCcceeEEEeecCCCEEEEEECCCCceeeeccCC--e--EEecCCCCCc
Confidence 345689998 6666666554221 2222222223333 456899999999999999886543 1 22222212
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCcEEEEE
Q 007855 395 KQNILLAGMSDKKIVQWDMNTKEITQEY 422 (587)
Q Consensus 395 ~~~~l~sg~~dg~I~iwD~~t~~~~~~~ 422 (587)
.+..-+.-+.+|.|.|=++.+++++...
T Consensus 139 ~Q~wsiiPttnGAVQIKnvatg~CL~t~ 166 (206)
T 1sr4_A 139 AQEFELLPTDSGAVVIKSVSQGRCVTYN 166 (206)
T ss_dssp GGCEEEEEBTTSCEEEEETTTCCEEEEC
T ss_pred ccEEEEecCCCccEEEEECCCCccCCcc
Confidence 2334444556788888888888887764
Done!