Citrus Sinensis ID: 007855

Local Sequence Feature Prediction

Prediction and Method	Result

Residue Number Marker

Protein Sequence

Secondary Structure (Consensus)

Disordered Region (Consensus)

Transmembrane Helix (Consensus)

Signal Peptide (Consensus)

Coiled Coil (COILS)

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------

MDLLQNYADEKEDELDKPENQNDQNPDSAALESSPPHILPSKSAAPQVDDTTLALTVAQARQTQSRPIDPSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNIRQNEQKKRKLERKQEAEGGDGMAVDVDPAEVNNPATDSWLMKNRKSPWAGKKEGVQTELTEEQKKYAEEYAKKKEDKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD

cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEcccHHcccccccccccccccccccccccccccCECcccccccccHHHHHcccEEcCECcccccccccccHHHHHcccccEEEEEcHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccccccccEEccccccccEEEEEEEcccccCECccccccEEECcccCEEEEEECcccccEEEEccccccccccccccccCEEEEcccccccEEEEEECcccccEEEEEcccccEEEEEcccccCEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEcccccccEEEEECccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEECcccccEEEEEcccccEEEEccccccccccEEEEcccccEEEEEEccccEEEEEccccEEEcccccECcccccccEEEEEEcccccEEEEEcccccEEEEEccccCEEEEEEcccccEEEEEEccccccEEEEECccccEEEcc

*DL****************************************AAPQVDDTTLALT*************PSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNI***********************************TDSWLMKNRKSPWA**************************************VEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD

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MDLLQNYADEKEDELDKPENQNDQNPDSAALESSPPHILPSKSAAPQVDDTTLALTVAQARQTQSRPIDPSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNIRQNEQKKRKLERKQEAEGGDGMAVDVDPAEVNNPATDSWLMKNRKSPWAGKKEGVxxxxxxxxxxxxxxxxxxxxxKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries

Annotation	Function Description	Confidence Level	Reference Protein
Pre-mRNA-processing factor 17	Associates with the spliceosome late in the splicing pathway and may function in the second step of pre-mRNA splicing.	probable	Q9DC48
Pre-mRNA-processing factor 17	Associates with the spliceosome late in the splicing pathway and may function in the second step of pre-mRNA splicing.	probable	O60508
Pre-mRNA-processing factor 17	Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides.	probable	O43071

Prediction of Enzyme Commission Number

No EC number assigned to the protein, probably not an enzyme!

Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 246-270,285-587
View the alignment between query and template
View the model in PyMOL

Template: 3FRX, chain A
Confidence level:very confident
Coverage over the Query: 238-545
View the alignment between query and template
View the model in PyMOL