Citrus Sinensis ID: 007855


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------
MDLLQNYADEKEDELDKPENQNDQNPDSAALESSPPHILPSKSAAPQVDDTTLALTVAQARQTQSRPIDPSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNIRQNEQKKRKLERKQEAEGGDGMAVDVDPAEVNNPATDSWLMKNRKSPWAGKKEGVQTELTEEQKKYAEEYAKKKEDKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccEEEEcccHHcccccccccccccccccccccccccccCECcccccccccHHHHHcccEEcCECcccccccccccHHHHHcccccEEEEEcHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcccccccccccccEEccccccccEEEEEEEcccccCECccccccEEECcccCEEEEEECcccccEEEEccccccccccccccccCEEEEcccccccEEEEEECcccccEEEEEcccccEEEEEcccccCEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccEEEEEcccccccEEEEECccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEECcccccEEEEEcccccEEEEccccccccccEEEEcccccEEEEEEccccEEEEEccccEEEcccccECcccccccEEEEEEcccccEEEEEcccccEEEEEccccCEEEEEEcccccEEEEEEccccccEEEEECccccEEEcc
*DL****************************************AAPQVDDTTLALT*************PSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNI***********************************TDSWLMKNRKSPWA**************************************VEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDLLQNYADEKEDELDKPENQNDQNPDSAALESSPPHILPSKSAAPQVDDTTLALTVAQARQTQSRPIDPSQHVVAYNPTYEQLWAPIYGPAHPYAKDGIAQGMRNHKLGFVEDASIDSFVFDEQYNTFYKYGYAADPAGSNYIGDLDALEKNNAISVYNIRQNEQKKRKLERKQEAEGGDGMAVDVDPAEVNNPATDSWLMKNRKSPWAGKKEGVxxxxxxxxxxxxxxxxxxxxxKGNAGGEKGEHVEDKSTFHGKEEKDYQGRSWVAPPKDAKAANDHCYIPKRLVHTWSGHTKGVSAIRFFPKYGHLILSAGMDTKVKIWDVFNSGKCMRTYMGHSKAVRDISFCNDGTKFLTASYDKNIKYWDTETGQVIRTFSTGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWDMNTKEITQEYDQHLGAVNTITFVDNNRRFVTSSDDKSLRVWEFGIPVVIKYISEPHMHSMPSISLHPNTNWLAAQSLDNQILIYSTRERFQLNKKKRFAGHIVAGYACQVNFSPDGRFVMSGDGEGKCWFWDWKSCKVFRTLKCHEGVCIGCEWHPLEQSKVATCGWDGLIKYWD

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
Pre-mRNA-processing factor 17 Associates with the spliceosome late in the splicing pathway and may function in the second step of pre-mRNA splicing.probableQ9DC48
Pre-mRNA-processing factor 17 Associates with the spliceosome late in the splicing pathway and may function in the second step of pre-mRNA splicing.probableO60508
Pre-mRNA-processing factor 17 Functions in the second step of pre-mRNA splicing. Involved in splicing intron which are longer than 200 nucleotides.probableO43071

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2YMU, chain A
Confidence level:very confident
Coverage over the Query: 246-270,285-587
View the alignment between query and template
View the model in PyMOL
Template: 3FRX, chain A
Confidence level:very confident
Coverage over the Query: 238-545
View the alignment between query and template
View the model in PyMOL