Query 007856
Match_columns 587
No_of_seqs 215 out of 678
Neff 5.2
Searched_HMMs 46136
Date Thu Mar 28 16:15:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007856.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007856hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03514 GRAS: GRAS domain fam 100.0 3E-113 7E-118 910.3 38.4 369 217-587 1-374 (374)
2 PRK15451 tRNA cmo(5)U34 methyl 97.2 0.016 3.5E-07 58.7 16.8 192 298-541 33-226 (247)
3 TIGR02752 MenG_heptapren 2-hep 96.2 0.22 4.7E-06 49.3 16.0 114 313-456 35-149 (231)
4 TIGR00740 methyltransferase, p 96.0 0.17 3.7E-06 50.8 14.4 106 323-456 53-159 (239)
5 TIGR02716 C20_methyl_CrtF C-20 95.2 0.53 1.1E-05 49.1 14.9 119 312-461 138-258 (306)
6 PLN02233 ubiquinone biosynthes 93.4 7.2 0.00016 40.1 18.3 132 312-472 62-195 (261)
7 PF13847 Methyltransf_31: Meth 93.0 0.69 1.5E-05 42.9 9.3 107 323-457 3-109 (152)
8 TIGR01934 MenG_MenH_UbiE ubiqu 92.4 11 0.00024 36.4 17.5 116 311-458 27-144 (223)
9 PRK14103 trans-aconitate 2-met 90.9 2 4.4E-05 43.5 10.7 106 313-457 19-125 (255)
10 PF13489 Methyltransf_23: Meth 90.4 2.7 5.9E-05 38.3 10.1 95 321-458 20-116 (161)
11 PRK08317 hypothetical protein; 90.3 14 0.00029 35.9 15.6 43 315-363 11-53 (241)
12 PRK06202 hypothetical protein; 90.3 4.9 0.00011 40.0 12.7 108 322-457 59-166 (232)
13 TIGR00477 tehB tellurite resis 89.7 3.9 8.4E-05 40.0 11.2 111 310-453 17-128 (195)
14 COG2226 UbiE Methylase involve 88.8 31 0.00068 35.6 17.5 190 301-542 28-221 (238)
15 PTZ00098 phosphoethanolamine N 88.8 12 0.00027 38.4 14.5 118 307-456 36-154 (263)
16 PRK11207 tellurite resistance 88.2 5.5 0.00012 39.0 11.1 112 310-454 17-130 (197)
17 PF09243 Rsm22: Mitochondrial 88.2 2.5 5.4E-05 44.0 9.0 138 307-475 13-156 (274)
18 PRK00216 ubiE ubiquinone/menaq 88.1 27 0.00059 34.0 17.1 43 316-364 44-86 (239)
19 PF01209 Ubie_methyltran: ubiE 86.5 2.9 6.4E-05 42.5 8.3 179 314-543 38-218 (233)
20 PLN02396 hexaprenyldihydroxybe 86.1 11 0.00024 40.3 12.8 100 324-457 132-234 (322)
21 PRK12335 tellurite resistance 85.5 7.7 0.00017 40.3 11.0 95 326-453 123-218 (287)
22 PF13649 Methyltransf_25: Meth 85.4 3.5 7.6E-05 35.5 7.1 97 327-450 1-99 (101)
23 PF00891 Methyltransf_2: O-met 85.3 2.2 4.8E-05 42.7 6.6 109 313-460 90-202 (241)
24 smart00138 MeTrc Methyltransfe 84.3 2.9 6.3E-05 43.2 7.1 45 321-365 97-143 (264)
25 PRK11036 putative S-adenosyl-L 83.9 6.6 0.00014 39.9 9.4 112 314-456 36-147 (255)
26 TIGR02081 metW methionine bios 83.5 13 0.00027 36.1 10.9 40 314-363 6-45 (194)
27 TIGR03438 probable methyltrans 83.4 14 0.00031 38.7 12.0 118 315-457 57-176 (301)
28 TIGR02072 BioC biotin biosynth 83.2 26 0.00056 34.1 13.0 100 323-457 34-134 (240)
29 PLN02244 tocopherol O-methyltr 83.1 15 0.00032 39.3 12.1 98 323-453 118-218 (340)
30 PLN02336 phosphoethanolamine N 82.8 15 0.00032 40.8 12.3 114 313-457 27-141 (475)
31 TIGR03587 Pse_Me-ase pseudamin 79.2 20 0.00043 35.7 10.7 99 326-459 46-144 (204)
32 PRK01683 trans-aconitate 2-met 79.1 21 0.00046 35.9 11.1 111 312-458 20-130 (258)
33 TIGR02021 BchM-ChlM magnesium 78.4 18 0.0004 35.6 10.2 50 306-364 36-87 (219)
34 PLN02336 phosphoethanolamine N 76.6 35 0.00076 37.9 12.8 113 312-457 255-368 (475)
35 PLN02585 magnesium protoporphy 76.0 20 0.00042 38.4 10.2 103 323-456 144-248 (315)
36 PRK05785 hypothetical protein; 75.6 25 0.00055 35.3 10.5 93 324-457 52-145 (226)
37 PRK05134 bifunctional 3-demeth 74.7 75 0.0016 31.4 13.4 103 322-457 47-150 (233)
38 PRK15068 tRNA mo(5)U34 methylt 71.5 87 0.0019 33.4 13.8 135 292-457 78-225 (322)
39 COG2227 UbiG 2-polyprenyl-3-me 71.2 9.2 0.0002 39.6 6.0 100 323-456 59-159 (243)
40 PF12847 Methyltransf_18: Meth 70.8 17 0.00037 31.2 7.0 105 326-457 4-110 (112)
41 TIGR00138 gidB 16S rRNA methyl 68.7 27 0.00058 34.1 8.5 97 325-457 44-141 (181)
42 TIGR00452 methyltransferase, p 66.3 59 0.0013 34.8 11.1 113 314-457 112-224 (314)
43 PRK11873 arsM arsenite S-adeno 64.7 79 0.0017 32.2 11.4 100 325-455 79-180 (272)
44 TIGR01983 UbiG ubiquinone bios 64.1 1.5E+02 0.0032 28.9 13.2 32 323-363 45-76 (224)
45 PF08241 Methyltransf_11: Meth 64.0 15 0.00033 29.9 5.0 93 328-455 1-94 (95)
46 COG1341 Predicted GTPase or GT 60.3 96 0.0021 34.5 11.5 156 306-509 89-253 (398)
47 PRK10258 biotin biosynthesis p 59.7 1.5E+02 0.0032 29.7 12.3 42 313-363 32-73 (251)
48 PRK07580 Mg-protoporphyrin IX 55.0 94 0.002 30.4 9.7 33 323-364 63-95 (230)
49 PRK13255 thiopurine S-methyltr 54.6 1.7E+02 0.0038 29.4 11.7 112 324-467 38-168 (218)
50 PF02353 CMAS: Mycolic acid cy 54.4 58 0.0013 34.0 8.5 114 312-457 51-165 (273)
51 PRK11705 cyclopropane fatty ac 53.5 96 0.0021 34.0 10.3 108 313-456 157-265 (383)
52 PRK00107 gidB 16S rRNA methylt 53.5 1.8E+02 0.0039 28.7 11.3 98 324-457 46-144 (187)
53 PF08242 Methyltransf_12: Meth 51.6 4.3 9.3E-05 34.6 -0.4 32 328-366 1-32 (99)
54 PF03291 Pox_MCEL: mRNA cappin 49.7 95 0.0021 33.5 9.4 113 323-453 62-181 (331)
55 PF03848 TehB: Tellurite resis 49.2 1.3E+02 0.0027 30.2 9.5 110 313-455 20-130 (192)
56 TIGR02469 CbiT precorrin-6Y C5 48.9 1.7E+02 0.0038 25.1 10.4 32 326-364 22-53 (124)
57 smart00828 PKS_MT Methyltransf 47.0 1.2E+02 0.0027 29.6 9.1 99 326-455 2-101 (224)
58 TIGR03439 methyl_EasF probable 46.9 2.1E+02 0.0045 30.9 11.3 148 314-484 69-234 (319)
59 COG2230 Cfa Cyclopropane fatty 46.7 2.1E+02 0.0047 30.4 11.2 112 310-453 59-171 (283)
60 COG4106 Tam Trans-aconitate me 45.8 86 0.0019 32.6 7.7 110 318-463 25-134 (257)
61 PF07521 RMMBL: RNA-metabolisi 45.6 40 0.00086 25.4 4.1 41 414-459 1-41 (43)
62 TIGR03840 TMPT_Se_Te thiopurin 42.9 2.8E+02 0.0061 27.8 11.0 32 324-364 35-66 (213)
63 PRK06922 hypothetical protein; 42.4 1.5E+02 0.0033 35.2 10.1 112 325-458 420-538 (677)
64 PRK00121 trmB tRNA (guanine-N( 39.8 1.5E+02 0.0033 29.1 8.4 35 323-364 40-74 (202)
65 PRK10909 rsmD 16S rRNA m(2)G96 39.6 2.9E+02 0.0063 27.5 10.4 106 325-462 55-163 (199)
66 smart00650 rADc Ribosomal RNA 39.1 3.4E+02 0.0073 25.6 10.5 42 314-364 4-45 (169)
67 PF13679 Methyltransf_32: Meth 37.6 75 0.0016 29.4 5.6 42 320-364 22-63 (141)
68 PRK10660 tilS tRNA(Ile)-lysidi 37.6 4.7E+02 0.01 29.3 12.7 64 331-397 21-84 (436)
69 COG0075 Serine-pyruvate aminot 36.8 6.3E+02 0.014 28.1 13.6 98 302-411 87-185 (383)
70 PLN02446 (5-phosphoribosyl)-5- 35.1 46 0.001 34.9 4.1 27 320-347 55-81 (262)
71 PRK00274 ksgA 16S ribosomal RN 33.3 1.4E+02 0.003 30.9 7.3 56 300-364 14-74 (272)
72 PRK13944 protein-L-isoaspartat 31.8 4.3E+02 0.0093 25.9 10.2 45 314-364 63-107 (205)
73 TIGR03534 RF_mod_PrmC protein- 30.4 3.8E+02 0.0081 26.4 9.6 79 323-423 87-165 (251)
74 TIGR00563 rsmB ribosomal RNA s 29.8 6.4E+02 0.014 27.8 12.2 71 310-397 225-295 (426)
75 TIGR00091 tRNA (guanine-N(7)-) 29.3 2.5E+02 0.0054 27.3 8.0 33 324-363 17-49 (194)
76 PRK13168 rumA 23S rRNA m(5)U19 28.6 4.4E+02 0.0096 29.2 10.7 103 322-458 296-400 (443)
77 TIGR01626 ytfJ_HI0045 conserve 28.2 1.3E+02 0.0027 30.0 5.7 113 323-448 59-182 (184)
78 PF11455 DUF3018: Protein of 28.2 39 0.00084 28.4 1.7 20 525-544 4-23 (65)
79 COG1500 Predicted exosome subu 26.9 1.5E+02 0.0032 30.8 5.9 62 492-556 88-151 (234)
80 PRK14968 putative methyltransf 26.8 5.2E+02 0.011 24.0 10.8 32 323-363 23-54 (188)
81 PLN02490 MPBQ/MSBQ methyltrans 26.6 2.7E+02 0.0058 30.3 8.3 34 323-363 113-146 (340)
82 TIGR01716 RGG_Cterm transcript 25.5 1.4E+02 0.0031 29.2 5.5 54 217-270 127-181 (220)
83 TIGR02129 hisA_euk phosphoribo 24.8 72 0.0016 33.3 3.4 25 320-348 50-74 (253)
84 PF04716 ETC_C1_NDUFA5: ETC co 24.7 1.4E+02 0.0031 24.2 4.4 39 475-516 8-46 (57)
85 PRK03522 rumB 23S rRNA methylu 24.7 4.9E+02 0.011 27.4 9.8 99 324-457 174-273 (315)
86 PLN02232 ubiquinone biosynthes 24.5 6E+02 0.013 23.9 10.9 34 417-458 47-82 (160)
87 TIGR02085 meth_trns_rumB 23S r 24.1 5.2E+02 0.011 28.1 10.0 97 326-457 236-333 (374)
88 PRK15001 SAM-dependent 23S rib 24.0 4.8E+02 0.01 28.8 9.7 119 313-457 218-339 (378)
89 PF15609 PRTase_2: Phosphoribo 23.4 4.3E+02 0.0093 26.7 8.4 70 319-398 118-188 (191)
90 PF07522 DRMBL: DNA repair met 23.2 2.7E+02 0.0058 24.8 6.4 19 436-454 85-103 (110)
91 cd00635 PLPDE_III_YBL036c_like 23.0 2.7E+02 0.0058 27.7 7.0 70 323-396 117-197 (222)
92 PRK14121 tRNA (guanine-N(7)-)- 22.7 5.6E+02 0.012 28.5 9.9 42 315-363 114-155 (390)
93 PRK09489 rsmC 16S ribosomal RN 22.3 9E+02 0.019 26.1 11.3 115 312-455 185-300 (342)
94 PF04244 DPRP: Deoxyribodipyri 22.0 1.5E+02 0.0032 30.3 5.0 83 300-395 36-124 (224)
95 PTZ00338 dimethyladenosine tra 21.3 3E+02 0.0065 29.1 7.3 39 316-363 29-67 (294)
96 PRK03646 dadX alanine racemase 21.0 2.1E+02 0.0045 31.0 6.2 36 323-362 117-157 (355)
97 KOG1165 Casein kinase (serine/ 20.6 55 0.0012 36.0 1.6 14 320-333 163-176 (449)
98 PRK09328 N5-glutamine S-adenos 20.6 8.7E+02 0.019 24.4 11.7 37 321-364 106-142 (275)
99 TIGR00406 prmA ribosomal prote 20.3 9.8E+02 0.021 24.9 11.2 50 307-364 141-192 (288)
No 1
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=100.00 E-value=3.1e-113 Score=910.29 Aligned_cols=369 Identities=49% Similarity=0.828 Sum_probs=355.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHhhccCcccccccccCCCC---chhHHHH
Q 007856 217 LKQLLIDCAATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMAASGKFLYKALKCKEPP---SSDRLAA 293 (587)
Q Consensus 217 l~~LLl~CA~AV~~gd~~~A~~lL~~L~~~aS~~Gd~~QRLA~yFaeAL~aRl~~sg~~~y~~l~~~~~~---~~~~l~A 293 (587)
|+|||++||+||+.||.+.|+.+|++|++++||.|||+||||+||++||.+||.++++++|+++....++ ..+.+.|
T Consensus 1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~~~~~~~~~~~~~~~~~~~~~a 80 (374)
T PF03514_consen 1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPGLYSALPPSSPSPSESSEQLAA 80 (374)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcccccCCCCccccccchHHHHHH
Confidence 5799999999999999999999999999999999999999999999999999999999999887655443 5678899
Q ss_pred HHHHHHhCCcchhhhHHhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHH
Q 007856 294 MQILFEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGL 373 (587)
Q Consensus 294 ~q~f~e~sP~~kfa~~tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L 373 (587)
|+.||++|||+||||||||||||||++|+++||||||||++|.|||+|||+||.|++|||+||||||+.|.+. +...+
T Consensus 81 ~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~--~~~~l 158 (374)
T PF03514_consen 81 YQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSG--SADEL 158 (374)
T ss_pred HHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCC--cHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998765 45689
Q ss_pred HHHHHHHHHHHHHcCCceEEEEe-eCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcE
Q 007856 374 QIIGLRLESLAEALGVPFEFHAV-PSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKL 452 (587)
Q Consensus 374 ~etG~rL~~fA~~lgvpFeF~~V-~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkV 452 (587)
++||+||.+||+++||||||++| ..+++++++++|++++||+|||||+|+||||.+++....+||+.||+.||+|+|+|
T Consensus 159 ~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~v 238 (374)
T PF03514_consen 159 QETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKV 238 (374)
T ss_pred HHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCE
Confidence 99999999999999999999995 67899999999999999999999999999999999888899999999999999999
Q ss_pred EEEEeccCCCCCCCchHHHHHHHhHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhhhccCcchhhhhhhhhhHHHH
Q 007856 453 VTVVEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRAR 532 (587)
Q Consensus 453 VtlvEqEan~Ns~~F~~RF~EAL~yYsAlFDSLda~lpr~s~eR~~vE~~~lgreI~NiVAcEG~eRvER~E~~~~Wr~R 532 (587)
||+||+|+|||+++|++||.|||+||+|+|||||+++|+++++|+.+|+.+||++|+|||||||.+|+||||++++|+.|
T Consensus 239 vv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~~~W~~r 318 (374)
T PF03514_consen 239 VVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERLEQWRRR 318 (374)
T ss_pred EEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCccccCChHHHHHHHHHHHhcC-CCcEEEEeCCEEEEEECCceeEEEeecC
Q 007856 533 MTMAGFTSCPMSADVTDMIRKLIKQYC-DRYKLKEELGLLHFGWEDKSLIVASAWK 587 (587)
Q Consensus 533 m~~AGF~~vplS~~~~~qak~LL~~y~-~gf~v~e~~g~L~LgWkgr~L~~aSAWr 587 (587)
|.+|||+++|+|+.++.|||.||+.|. +||+|++++|||+|||||+||+++||||
T Consensus 319 ~~~aGF~~~~ls~~~~~qa~~ll~~~~~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr 374 (374)
T PF03514_consen 319 MRRAGFRPVPLSEFAVSQAKLLLRKFPGDGYTVEEDGGCLLLGWKGRPLVAASAWR 374 (374)
T ss_pred HHhcCCeecCCCHHHHHHHHHHHhccCCCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence 999999999999999999999999875 8999999999999999999999999998
No 2
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.22 E-value=0.016 Score=58.70 Aligned_cols=192 Identities=11% Similarity=0.195 Sum_probs=97.9
Q ss_pred HHhCCcchhhhHHhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHH
Q 007856 298 FEVCPCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIG 377 (587)
Q Consensus 298 ~e~sP~~kfa~~tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG 377 (587)
....|++...|-.++..+-..+. ..-+|+|+|.|.|.--..|.+.+. .|..++|||+.... .++...
T Consensus 33 ~~~~p~y~~~~~~~~~~~~~~~~--~~~~vLDlGcGtG~~~~~l~~~~~-----~~~~~v~gvD~S~~------ml~~A~ 99 (247)
T PRK15451 33 QRSVPGYSNIISMIGMLAERFVQ--PGTQVYDLGCSLGAATLSVRRNIH-----HDNCKIIAIDNSPA------MIERCR 99 (247)
T ss_pred HhcCCChHHHHHHHHHHHHHhCC--CCCEEEEEcccCCHHHHHHHHhcC-----CCCCeEEEEeCCHH------HHHHHH
Confidence 34567777666665543322222 234799999999864333332221 25679999997532 244444
Q ss_pred HHHHHHHHHcCCceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCc-EEEE
Q 007856 378 LRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPK-LVTV 455 (587)
Q Consensus 378 ~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~Pk-VVtl 455 (587)
+++ +..+++-.++.+..+..++.. ...++++ +.+.|||++++ .+..+|+.| +.|+|. ++++
T Consensus 100 ~~~----~~~~~~~~v~~~~~d~~~~~~-----~~~D~vv--~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l 162 (247)
T PRK15451 100 RHI----DAYKAPTPVDVIEGDIRDIAI-----ENASMVV--LNFTLQFLEPS------ERQALLDKIYQGLNPGGALVL 162 (247)
T ss_pred HHH----HhcCCCCCeEEEeCChhhCCC-----CCCCEEe--hhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEE
Confidence 444 334443223333444433322 1223443 45678998652 355666666 678997 5556
Q ss_pred EeccCCCCCCCchHHHHHHHhHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhhhccCcchhhhhhhhhhHHHHHHh
Q 007856 456 VEQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTM 535 (587)
Q Consensus 456 vEqEan~Ns~~F~~RF~EAL~yYsAlFDSLda~lpr~s~eR~~vE~~~lgreI~NiVAcEG~eRvER~E~~~~Wr~Rm~~ 535 (587)
+|.=. ..++.....+.+....|. .....+ ...+++. ..... ++-++++..+...+++.
T Consensus 163 ~e~~~-~~~~~~~~~~~~~~~~~~-----~~~g~s-----~~ei~~~--~~~~~---------~~~~~~~~~~~~~~L~~ 220 (247)
T PRK15451 163 SEKFS-FEDAKVGELLFNMHHDFK-----RANGYS-----ELEISQK--RSMLE---------NVMLTDSVETHKARLHK 220 (247)
T ss_pred EEecC-CCcchhHHHHHHHHHHHH-----HHcCCC-----HHHHHHH--HHHHH---------hhcccCCHHHHHHHHHH
Confidence 66422 122233333333322221 111111 1112221 11122 23345677789999999
Q ss_pred CCCccc
Q 007856 536 AGFTSC 541 (587)
Q Consensus 536 AGF~~v 541 (587)
|||..+
T Consensus 221 aGF~~v 226 (247)
T PRK15451 221 AGFEHS 226 (247)
T ss_pred cCchhH
Confidence 999764
No 3
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.20 E-value=0.22 Score=49.32 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=58.9
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
+.++..+.-.+.-+|+|+|.|.|.-.. .|+.+- +|..++|||+.... .++.+.+++ +..+++ .
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~----~la~~~--~~~~~v~gvD~s~~------~~~~a~~~~----~~~~~~-~ 97 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSI----ALAEAV--GPEGHVIGLDFSEN------MLSVGRQKV----KDAGLH-N 97 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHH----HHHHHh--CCCCEEEEEECCHH------HHHHHHHHH----HhcCCC-c
Confidence 445555554445689999999987333 343331 34568999996432 233333333 234443 2
Q ss_pred EEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHH-HHHhcCCcEEEEE
Q 007856 393 FHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLR-MVKSLNPKLVTVV 456 (587)
Q Consensus 393 F~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~-~Vr~L~PkVVtlv 456 (587)
...+..+.+++.. .-..=+.|+ +.+.+||+++ ...+|+ ..+.|+|.-.+++
T Consensus 98 v~~~~~d~~~~~~---~~~~fD~V~--~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~ 149 (231)
T TIGR02752 98 VELVHGNAMELPF---DDNSFDYVT--IGFGLRNVPD--------YMQVLREMYRVVKPGGKVVC 149 (231)
T ss_pred eEEEEechhcCCC---CCCCccEEE--EecccccCCC--------HHHHHHHHHHHcCcCeEEEE
Confidence 2333333333221 101112333 4456788764 235565 4577899854443
No 4
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=96.03 E-value=0.17 Score=50.76 Aligned_cols=106 Identities=20% Similarity=0.361 Sum_probs=58.6
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSL 402 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~ 402 (587)
..-+|+|+|.|.|. ++..|+.+-. .|..++|||+.... .++.+.+++.++. .+...+| +..+..+
T Consensus 53 ~~~~iLDlGcG~G~----~~~~l~~~~~-~p~~~v~gvD~s~~------ml~~a~~~~~~~~--~~~~v~~--~~~d~~~ 117 (239)
T TIGR00740 53 PDSNVYDLGCSRGA----ATLSARRNIN-QPNVKIIGIDNSQP------MVERCRQHIAAYH--SEIPVEI--LCNDIRH 117 (239)
T ss_pred CCCEEEEecCCCCH----HHHHHHHhcC-CCCCeEEEEeCCHH------HHHHHHHHHHhcC--CCCCeEE--EECChhh
Confidence 34579999999985 4445554421 25689999997432 2444444443321 1223334 3344433
Q ss_pred CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 007856 403 VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVV 456 (587)
Q Consensus 403 l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlv 456 (587)
+.. ....+ |-+.+.|||++++ .+..+|+.+ +.|+|.-++++
T Consensus 118 ~~~-----~~~d~--v~~~~~l~~~~~~------~~~~~l~~i~~~LkpgG~l~i 159 (239)
T TIGR00740 118 VEI-----KNASM--VILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVL 159 (239)
T ss_pred CCC-----CCCCE--EeeecchhhCCHH------HHHHHHHHHHHhcCCCeEEEE
Confidence 322 12233 4456678998652 245666665 67899866544
No 5
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=95.21 E-value=0.53 Score=49.11 Aligned_cols=119 Identities=12% Similarity=0.156 Sum_probs=67.4
Q ss_pred hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCce
Q 007856 312 NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPF 391 (587)
Q Consensus 312 NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpF 391 (587)
.+.|++.+.-.+.-+|+|+|-|.|. +..+++++. |.+++|+++.|. .++.+. +.++..|+.=
T Consensus 138 ~~~l~~~~~~~~~~~vlDiG~G~G~----~~~~~~~~~---p~~~~~~~D~~~-------~~~~a~----~~~~~~gl~~ 199 (306)
T TIGR02716 138 IQLLLEEAKLDGVKKMIDVGGGIGD----ISAAMLKHF---PELDSTILNLPG-------AIDLVN----ENAAEKGVAD 199 (306)
T ss_pred HHHHHHHcCCCCCCEEEEeCCchhH----HHHHHHHHC---CCCEEEEEecHH-------HHHHHH----HHHHhCCccc
Confidence 4667777765566799999999984 444555542 678999998632 233333 3455556642
Q ss_pred EEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCc-EEEEEeccCC
Q 007856 392 EFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPK-LVTVVEQDMN 461 (587)
Q Consensus 392 eF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~Pk-VVtlvEqEan 461 (587)
.++.+..+..+.. ....+++++ ...||+..++ ....+|+.+ +.|+|. .++++|.-.+
T Consensus 200 rv~~~~~d~~~~~-----~~~~D~v~~--~~~lh~~~~~------~~~~il~~~~~~L~pgG~l~i~d~~~~ 258 (306)
T TIGR02716 200 RMRGIAVDIYKES-----YPEADAVLF--CRILYSANEQ------LSTIMCKKAFDAMRSGGRLLILDMVID 258 (306)
T ss_pred eEEEEecCccCCC-----CCCCCEEEe--EhhhhcCChH------HHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 3333443322111 112334333 3457777552 224577655 689995 5556775443
No 6
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=93.37 E-value=7.2 Score=40.11 Aligned_cols=132 Identities=15% Similarity=0.213 Sum_probs=69.2
Q ss_pred hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCce
Q 007856 312 NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPF 391 (587)
Q Consensus 312 NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpF 391 (587)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+. +|.-+||||+.... .++.+.++....++...-..
T Consensus 62 r~~~~~~~~~~~~~~VLDlGcGtG~----~~~~la~~~--~~~~~V~gvD~S~~------ml~~A~~r~~~~~~~~~~~i 129 (261)
T PLN02233 62 KRMAVSWSGAKMGDRVLDLCCGSGD----LAFLLSEKV--GSDGKVMGLDFSSE------QLAVAASRQELKAKSCYKNI 129 (261)
T ss_pred HHHHHHHhCCCCCCEEEEECCcCCH----HHHHHHHHh--CCCCEEEEEECCHH------HHHHHHHHhhhhhhccCCCe
Confidence 3334444433445689999999997 334555542 23459999997542 34444444322222222223
Q ss_pred EEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHH-HHHhcCCcE-EEEEeccCCCCCCCchH
Q 007856 392 EFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLR-MVKSLNPKL-VTVVEQDMNTNTSPFFP 469 (587)
Q Consensus 392 eF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~-~Vr~L~PkV-VtlvEqEan~Ns~~F~~ 469 (587)
+| +..+.+++ ...++..=+|-+.+.|||++| +..+|+ ..|-|+|.- ++++|-. ....+|..
T Consensus 130 ~~--~~~d~~~l-----p~~~~sfD~V~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d~~--~~~~~~~~ 192 (261)
T PLN02233 130 EW--IEGDATDL-----PFDDCYFDAITMGYGLRNVVD--------RLKAMQEMYRVLKPGSRVSILDFN--KSTQPFTT 192 (261)
T ss_pred EE--EEcccccC-----CCCCCCEeEEEEecccccCCC--------HHHHHHHHHHHcCcCcEEEEEECC--CCCcHHHH
Confidence 33 33333332 233333335556778999865 234555 457799973 4455532 33345555
Q ss_pred HHH
Q 007856 470 RFI 472 (587)
Q Consensus 470 RF~ 472 (587)
.+.
T Consensus 193 ~~~ 195 (261)
T PLN02233 193 SMQ 195 (261)
T ss_pred HHH
Confidence 543
No 7
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=92.96 E-value=0.69 Score=42.95 Aligned_cols=107 Identities=21% Similarity=0.343 Sum_probs=62.4
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSL 402 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~ 402 (587)
+..+|+|+|.|.|..=..|.+.+ .|..+||||+.... .=++..+.++.++++ ..+.+..+..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~------~~~~~i~gvD~s~~----------~i~~a~~~~~~~~~~-ni~~~~~d~~~ 65 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKEL------NPGAKIIGVDISEE----------MIEYAKKRAKELGLD-NIEFIQGDIED 65 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHS------TTTSEEEEEESSHH----------HHHHHHHHHHHTTST-TEEEEESBTTC
T ss_pred CCCEEEEecCcCcHHHHHHHHhc------CCCCEEEEEECcHH----------HHHHhhccccccccc-ccceEEeehhc
Confidence 46789999999986444444322 23456999997532 334555677888998 34444455555
Q ss_pred CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 007856 403 VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVE 457 (587)
Q Consensus 403 l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvE 457 (587)
+... +. +.+=+|.+...|||+.+ +...+-+..+.|+|.-++++.
T Consensus 66 l~~~-~~---~~~D~I~~~~~l~~~~~-------~~~~l~~~~~~lk~~G~~i~~ 109 (152)
T PF13847_consen 66 LPQE-LE---EKFDIIISNGVLHHFPD-------PEKVLKNIIRLLKPGGILIIS 109 (152)
T ss_dssp GCGC-SS---TTEEEEEEESTGGGTSH-------HHHHHHHHHHHEEEEEEEEEE
T ss_pred cccc-cC---CCeeEEEEcCchhhccC-------HHHHHHHHHHHcCCCcEEEEE
Confidence 4422 22 33334455555688754 333444556888988666543
No 8
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=92.36 E-value=11 Score=36.36 Aligned_cols=116 Identities=21% Similarity=0.235 Sum_probs=59.9
Q ss_pred hhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCc
Q 007856 311 ANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVP 390 (587)
Q Consensus 311 ANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvp 390 (587)
.-..+++.+...+...|+|+|.|.|. +...++.+- |+..++++|+.... .++.+.+++. .+-.
T Consensus 27 ~~~~~~~~~~~~~~~~vldiG~G~G~----~~~~~~~~~--~~~~~~~~iD~~~~------~~~~~~~~~~-----~~~~ 89 (223)
T TIGR01934 27 WRRRAVKLIGVFKGQKVLDVACGTGD----LAIELAKSA--PDRGKVTGVDFSSE------MLEVAKKKSE-----LPLN 89 (223)
T ss_pred HHHHHHHHhccCCCCeEEEeCCCCCh----hHHHHHHhc--CCCceEEEEECCHH------HHHHHHHHhc-----cCCC
Confidence 33455666655567899999999885 333344332 33478999986432 1233333322 2222
Q ss_pred eEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHH-HHhcCCcEEE-EEec
Q 007856 391 FEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRM-VKSLNPKLVT-VVEQ 458 (587)
Q Consensus 391 FeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~-Vr~L~PkVVt-lvEq 458 (587)
..|.. .+..++. ..++..=+|-+.+.+|++++ .+.+|+. .+.|+|.-.+ +++.
T Consensus 90 i~~~~--~d~~~~~-----~~~~~~D~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~ 144 (223)
T TIGR01934 90 IEFIQ--ADAEALP-----FEDNSFDAVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVILEF 144 (223)
T ss_pred ceEEe--cchhcCC-----CCCCcEEEEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEEe
Confidence 33332 2222221 11222334445567788754 2345554 4667888544 4554
No 9
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=90.89 E-value=2 Score=43.50 Aligned_cols=106 Identities=20% Similarity=0.261 Sum_probs=61.0
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..++|||+.... ..+.|+..++.|.
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~----~~~~l~~~~---p~~~v~gvD~s~~--------------~~~~a~~~~~~~~ 77 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGN----LTRYLARRW---PGAVIEALDSSPE--------------MVAAARERGVDAR 77 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCH----HHHHHHHHC---CCCEEEEEECCHH--------------HHHHHHhcCCcEE
Confidence 356666665566789999999983 455676653 3458999996432 2223444455432
Q ss_pred EEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHH-HHHhcCCcEEEEEe
Q 007856 393 FHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLR-MVKSLNPKLVTVVE 457 (587)
Q Consensus 393 F~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~-~Vr~L~PkVVtlvE 457 (587)
..+.+++.+ .+..=+|-|.+.|||++| + ..+|+ ..+.|+|.-.+++.
T Consensus 78 ----~~d~~~~~~------~~~fD~v~~~~~l~~~~d-------~-~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 78 ----TGDVRDWKP------KPDTDVVVSNAALQWVPE-------H-ADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred ----EcChhhCCC------CCCceEEEEehhhhhCCC-------H-HHHHHHHHHhCCCCcEEEEE
Confidence 222232211 122224444556899875 2 34455 45779999666554
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=90.39 E-value=2.7 Score=38.26 Aligned_cols=95 Identities=18% Similarity=0.282 Sum_probs=52.2
Q ss_pred cCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCC
Q 007856 321 GEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKT 400 (587)
Q Consensus 321 g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~ 400 (587)
..+.-.|+|+|-|.| . +.+.|+.+ |. ++||++..... ++. ..+.+.-....
T Consensus 20 ~~~~~~vLDiGcG~G-~---~~~~l~~~--~~---~~~g~D~~~~~------~~~-----------~~~~~~~~~~~--- 70 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTG-S---FLRALAKR--GF---EVTGVDISPQM------IEK-----------RNVVFDNFDAQ--- 70 (161)
T ss_dssp TTTTSEEEEESSTTS-H---HHHHHHHT--TS---EEEEEESSHHH------HHH-----------TTSEEEEEECH---
T ss_pred cCCCCEEEEEcCCCC-H---HHHHHHHh--CC---EEEEEECCHHH------Hhh-----------hhhhhhhhhhh---
Confidence 355669999999999 3 45555554 22 99999965321 111 22222221111
Q ss_pred CCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEE-EEec
Q 007856 401 SLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVT-VVEQ 458 (587)
Q Consensus 401 e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVt-lvEq 458 (587)
.....++-.=+|-|...|||++| + ..+|+.| +-|+|.-++ ++..
T Consensus 71 ------~~~~~~~~fD~i~~~~~l~~~~d-------~-~~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 71 ------DPPFPDGSFDLIICNDVLEHLPD-------P-EEFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp ------THHCHSSSEEEEEEESSGGGSSH-------H-HHHHHHHHHCEEEEEEEEEEEE
T ss_pred ------hhhccccchhhHhhHHHHhhccc-------H-HHHHHHHHHhcCCCCEEEEEEc
Confidence 11112233445666688999975 3 3556555 568886444 4444
No 11
>PRK08317 hypothetical protein; Provisional
Probab=90.35 E-value=14 Score=35.89 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=28.0
Q ss_pred HHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 315 IIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 315 ILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
+++.+.-...-+|+|+|.|.|. |. ..++.+- +|.-++|||+..
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~-~~---~~~a~~~--~~~~~v~~~d~~ 53 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGN-DA---RELARRV--GPEGRVVGIDRS 53 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCH-HH---HHHHHhc--CCCcEEEEEeCC
Confidence 4566655566689999999874 33 3333332 245689999864
No 12
>PRK06202 hypothetical protein; Provisional
Probab=90.32 E-value=4.9 Score=40.04 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=55.5
Q ss_pred CCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCC
Q 007856 322 EKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTS 401 (587)
Q Consensus 322 ~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e 401 (587)
.+...|+|+|.|.|. +...|..... ...|..+||||+.... .++...++. ...++.+.. ... +
T Consensus 59 ~~~~~iLDlGcG~G~-~~~~L~~~~~--~~g~~~~v~gvD~s~~------~l~~a~~~~----~~~~~~~~~--~~~--~ 121 (232)
T PRK06202 59 DRPLTLLDIGCGGGD-LAIDLARWAR--RDGLRLEVTAIDPDPR------AVAFARANP----RRPGVTFRQ--AVS--D 121 (232)
T ss_pred CCCcEEEEeccCCCH-HHHHHHHHHH--hCCCCcEEEEEcCCHH------HHHHHHhcc----ccCCCeEEE--Eec--c
Confidence 455789999999996 3332222221 1235579999997542 122222221 122454433 221 1
Q ss_pred CCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 007856 402 LVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVE 457 (587)
Q Consensus 402 ~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvE 457 (587)
.+. ..++..=+|-|.+.|||++|+ ....+|+.+..+.-.++++.+
T Consensus 122 ~l~-----~~~~~fD~V~~~~~lhh~~d~------~~~~~l~~~~r~~~~~~~i~d 166 (232)
T PRK06202 122 ELV-----AEGERFDVVTSNHFLHHLDDA------EVVRLLADSAALARRLVLHND 166 (232)
T ss_pred ccc-----ccCCCccEEEECCeeecCChH------HHHHHHHHHHHhcCeeEEEec
Confidence 111 122333344555679999763 234677777655445555443
No 13
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=89.74 E-value=3.9 Score=40.05 Aligned_cols=111 Identities=12% Similarity=0.154 Sum_probs=64.1
Q ss_pred HhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCC
Q 007856 310 AANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGV 389 (587)
Q Consensus 310 tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgv 389 (587)
++...|++++.-.+.-+|+|+|.|.|.--. .||.+ | .++|||+.... +-..+.+.++..|+
T Consensus 17 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~a~----~la~~-g----~~V~~iD~s~~----------~l~~a~~~~~~~~~ 77 (195)
T TIGR00477 17 TTHSAVREAVKTVAPCKTLDLGCGQGRNSL----YLSLA-G----YDVRAWDHNPA----------SIASVLDMKARENL 77 (195)
T ss_pred CchHHHHHHhccCCCCcEEEeCCCCCHHHH----HHHHC-C----CeEEEEECCHH----------HHHHHHHHHHHhCC
Confidence 556788888876666799999999987443 33444 3 38999986432 22233445566677
Q ss_pred ceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEE
Q 007856 390 PFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLV 453 (587)
Q Consensus 390 pFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVV 453 (587)
+..+... +..... +. ..=+.++ |.+.+||+++ +.+..+++.+ +.|+|.-.
T Consensus 78 ~v~~~~~--d~~~~~---~~-~~fD~I~--~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~ 128 (195)
T TIGR00477 78 PLRTDAY--DINAAA---LN-EDYDFIF--STVVFMFLQA------GRVPEIIANMQAHTRPGGY 128 (195)
T ss_pred CceeEec--cchhcc---cc-CCCCEEE--EecccccCCH------HHHHHHHHHHHHHhCCCcE
Confidence 7444332 221111 11 1113333 3345788754 2355677765 66899964
No 14
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=88.84 E-value=31 Score=35.60 Aligned_cols=190 Identities=21% Similarity=0.273 Sum_probs=105.5
Q ss_pred CCcchhh-hHHhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHH
Q 007856 301 CPCFKFG-FMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLR 379 (587)
Q Consensus 301 sP~~kfa-~~tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~r 379 (587)
.+.+.|+ |.+=+++..+.+.-.+--+|+|.+.|-|- | .-.|+++-| .-+|||+|.+.. .|+...+|
T Consensus 28 n~~~S~g~~~~Wr~~~i~~~~~~~g~~vLDva~GTGd-~---a~~~~k~~g---~g~v~~~D~s~~------ML~~a~~k 94 (238)
T COG2226 28 NDLMSFGLHRLWRRALISLLGIKPGDKVLDVACGTGD-M---ALLLAKSVG---TGEVVGLDISES------MLEVAREK 94 (238)
T ss_pred cccccCcchHHHHHHHHHhhCCCCCCEEEEecCCccH-H---HHHHHHhcC---CceEEEEECCHH------HHHHHHHH
Confidence 4555665 35556666666544478899999998873 2 333444433 789999997643 35555554
Q ss_pred HHHHHHHcCCceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEec
Q 007856 380 LESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVEQ 458 (587)
Q Consensus 380 L~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvEq 458 (587)
+. ..|+.- +.-|..+.++ |...+.-.=+|-+.|.||+++| .+.+|+-+ |=|+|...++|-.
T Consensus 95 ~~----~~~~~~-i~fv~~dAe~-----LPf~D~sFD~vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vle 156 (238)
T COG2226 95 LK----KKGVQN-VEFVVGDAEN-----LPFPDNSFDAVTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLVLE 156 (238)
T ss_pred hh----ccCccc-eEEEEechhh-----CCCCCCccCEEEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEEEE
Confidence 33 334332 3334444443 3444444557888999999976 45666655 6689998665543
Q ss_pred cCCCCCCCchHHHHHHHh-HHHH-HHHhhhccCCCCCHHHHHHHHHHHHHhhhhhhhccCcchhhhhhhhhhHHHHHHhC
Q 007856 459 DMNTNTSPFFPRFIEAYN-YYSV-VFESLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMA 536 (587)
Q Consensus 459 Ean~Ns~~F~~RF~EAL~-yYsA-lFDSLda~lpr~s~eR~~vE~~~lgreI~NiVAcEG~eRvER~E~~~~Wr~Rm~~A 536 (587)
=..... .-|..+++ ||.. ++=.+......+..+.. +|..-| +++-..+.-...|..+
T Consensus 157 ~~~p~~----~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~-----yL~eSi------------~~~p~~~~l~~~~~~~ 215 (238)
T COG2226 157 FSKPDN----PVLRKAYILYYFKYVLPLIGKLVAKDAEAYE-----YLAESI------------RRFPDQEELKQMIEKA 215 (238)
T ss_pred cCCCCc----hhhHHHHHHHHHHhHhhhhceeeecChHHHH-----HHHHHH------------HhCCCHHHHHHHHHhc
Confidence 222222 23444444 4444 55455444332222222 222222 3333344556667789
Q ss_pred CCcccc
Q 007856 537 GFTSCP 542 (587)
Q Consensus 537 GF~~vp 542 (587)
||..+.
T Consensus 216 gf~~i~ 221 (238)
T COG2226 216 GFEEVR 221 (238)
T ss_pred CceEEe
Confidence 997664
No 15
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=88.76 E-value=12 Score=38.43 Aligned_cols=118 Identities=19% Similarity=0.225 Sum_probs=62.1
Q ss_pred hhHHhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHH
Q 007856 307 GFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEA 386 (587)
Q Consensus 307 a~~tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~ 386 (587)
+=+.+...|++.+.-.+.-+|+|+|.|.|.-- ..|+.+.+ .++|||+.... .++...++...
T Consensus 36 gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a----~~la~~~~----~~v~giD~s~~------~~~~a~~~~~~---- 97 (263)
T PTZ00098 36 GGIEATTKILSDIELNENSKVLDIGSGLGGGC----KYINEKYG----AHVHGVDICEK------MVNIAKLRNSD---- 97 (263)
T ss_pred CchHHHHHHHHhCCCCCCCEEEEEcCCCChhh----HHHHhhcC----CEEEEEECCHH------HHHHHHHHcCc----
Confidence 33455677777776667778999999998732 34444332 48999986432 12333322211
Q ss_pred cCCceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 007856 387 LGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVV 456 (587)
Q Consensus 387 lgvpFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlv 456 (587)
.-..+|.. .+..+. ...++..=+|-+...++|++.+ .+..+|+.+ +.|+|.-.+++
T Consensus 98 -~~~i~~~~--~D~~~~-----~~~~~~FD~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 98 -KNKIEFEA--NDILKK-----DFPENTFDMIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred -CCceEEEE--CCcccC-----CCCCCCeEEEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEE
Confidence 11233332 222111 1112222223344556777531 245677655 67899855544
No 16
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=88.19 E-value=5.5 Score=39.05 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=60.6
Q ss_pred HhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCC
Q 007856 310 AANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGV 389 (587)
Q Consensus 310 tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgv 389 (587)
.++..+++.+.....-.|+|+|.|.|. +...||.+ | .+||||+.... .++. +.+.++..|+
T Consensus 17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~----~a~~La~~-g----~~V~gvD~S~~------~i~~----a~~~~~~~~~ 77 (197)
T PRK11207 17 RTHSEVLEAVKVVKPGKTLDLGCGNGR----NSLYLAAN-G----FDVTAWDKNPM------SIAN----LERIKAAENL 77 (197)
T ss_pred CChHHHHHhcccCCCCcEEEECCCCCH----HHHHHHHC-C----CEEEEEeCCHH------HHHH----HHHHHHHcCC
Confidence 445566666655555689999999986 33445554 2 38999986432 1222 2233444565
Q ss_pred c-eEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEE
Q 007856 390 P-FEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVT 454 (587)
Q Consensus 390 p-FeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVt 454 (587)
. .++ +..+..++.. . ..=+.|+. .+.+|++++ ..+..+++.+ +.|+|.-++
T Consensus 78 ~~v~~--~~~d~~~~~~---~-~~fD~I~~--~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~ 130 (197)
T PRK11207 78 DNLHT--AVVDLNNLTF---D-GEYDFILS--TVVLMFLEA------KTIPGLIANMQRCTKPGGYN 130 (197)
T ss_pred CcceE--EecChhhCCc---C-CCcCEEEE--ecchhhCCH------HHHHHHHHHHHHHcCCCcEE
Confidence 4 333 2233332221 1 11123433 345687754 2355676655 678998764
No 17
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=88.17 E-value=2.5 Score=44.03 Aligned_cols=138 Identities=15% Similarity=0.242 Sum_probs=73.4
Q ss_pred hhHHhhHHHHhhhcc----CCeeEEEecccCCccc-hHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHH
Q 007856 307 GFMAANGAIIEAFKG----EKRVHIIDFDINQGSQ-YITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLE 381 (587)
Q Consensus 307 a~~tANqAILEA~~g----~~~VHIIDfdI~~G~Q-WpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~ 381 (587)
+++++-..||+.++. -+--+|+|||-|-|.- |.. .+.+ +-..++|.|+.+.. +.++|++|.
T Consensus 13 ~~YA~~~~vl~El~~r~p~f~P~~vLD~GsGpGta~wAa-~~~~------~~~~~~~~vd~s~~-------~~~l~~~l~ 78 (274)
T PF09243_consen 13 ATYAAVYRVLSELRKRLPDFRPRSVLDFGSGPGTALWAA-REVW------PSLKEYTCVDRSPE-------MLELAKRLL 78 (274)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCceEEEecCChHHHHHHH-HHHh------cCceeeeeecCCHH-------HHHHHHHHH
Confidence 455666677766652 3445999999998842 322 2222 13468999986432 445777775
Q ss_pred HHHHHcCCceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEeccC
Q 007856 382 SLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVEQDM 460 (587)
Q Consensus 382 ~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvEqEa 460 (587)
+-...... .+.. ..+..+.+.+.+.+-|+ +.+.|-.|++ ..|..+++.+ +.++| ++||||.-
T Consensus 79 ~~~~~~~~-~~~~------~~~~~~~~~~~~~DLvi--~s~~L~EL~~------~~r~~lv~~LW~~~~~-~LVlVEpG- 141 (274)
T PF09243_consen 79 RAGPNNRN-AEWR------RVLYRDFLPFPPDDLVI--ASYVLNELPS------AARAELVRSLWNKTAP-VLVLVEPG- 141 (274)
T ss_pred hccccccc-chhh------hhhhcccccCCCCcEEE--EehhhhcCCc------hHHHHHHHHHHHhccC-cEEEEcCC-
Confidence 53221110 0010 11111222333333332 3455666654 3578888888 55666 88899963
Q ss_pred CCCCCCchHHHHHHH
Q 007856 461 NTNTSPFFPRFIEAY 475 (587)
Q Consensus 461 n~Ns~~F~~RF~EAL 475 (587)
+..+...+.+.++.|
T Consensus 142 t~~Gf~~i~~aR~~l 156 (274)
T PF09243_consen 142 TPAGFRRIAEARDQL 156 (274)
T ss_pred ChHHHHHHHHHHHHH
Confidence 222223455666555
No 18
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=88.13 E-value=27 Score=34.05 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=26.5
Q ss_pred HhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 316 IEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 316 LEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
++.+.-.+..+|+|+|.|.|. +...++.+- |+..++|+++...
T Consensus 44 ~~~~~~~~~~~vldiG~G~G~----~~~~l~~~~--~~~~~v~~~D~s~ 86 (239)
T PRK00216 44 IKWLGVRPGDKVLDLACGTGD----LAIALAKAV--GKTGEVVGLDFSE 86 (239)
T ss_pred HHHhCCCCCCeEEEeCCCCCH----HHHHHHHHc--CCCCeEEEEeCCH
Confidence 333333345789999999985 222333321 3468999998643
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=86.52 E-value=2.9 Score=42.54 Aligned_cols=179 Identities=20% Similarity=0.288 Sum_probs=65.0
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEE
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEF 393 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF 393 (587)
.+++.+...+..+|+|.+.|.|--+.. |+.+.+ |.-+|||+|.+.. -|+...+++.+.... ..+|
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~----l~~~~~--~~~~v~~vD~s~~------ML~~a~~k~~~~~~~---~i~~ 102 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRE----LARRVG--PNGKVVGVDISPG------MLEVARKKLKREGLQ---NIEF 102 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHH----HGGGSS-----EEEEEES-HH------HHHHHHHHHHHTT-----SEEE
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHH----HHHHCC--CccEEEEecCCHH------HHHHHHHHHHhhCCC---CeeE
Confidence 344555566677999999999964444 444422 4459999997542 456666665544322 2333
Q ss_pred EEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcE-EEEEeccCCCCCCCchHHHH
Q 007856 394 HAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKL-VTVVEQDMNTNTSPFFPRFI 472 (587)
Q Consensus 394 ~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkV-VtlvEqEan~Ns~~F~~RF~ 472 (587)
|..+.+ .|...++..=+|-|.|.||+++| +...+=.+.|-|+|.- ++++|-. .... .-+.
T Consensus 103 --v~~da~-----~lp~~d~sfD~v~~~fglrn~~d-------~~~~l~E~~RVLkPGG~l~ile~~--~p~~---~~~~ 163 (233)
T PF01209_consen 103 --VQGDAE-----DLPFPDNSFDAVTCSFGLRNFPD-------RERALREMYRVLKPGGRLVILEFS--KPRN---PLLR 163 (233)
T ss_dssp --EE-BTT-----B--S-TT-EEEEEEES-GGG-SS-------HHHHHHHHHHHEEEEEEEEEEEEE--B-SS---HHHH
T ss_pred --EEcCHH-----HhcCCCCceeEEEHHhhHHhhCC-------HHHHHHHHHHHcCCCeEEEEeecc--CCCC---chhh
Confidence 333333 34555566668889999999976 2234444667899974 4456632 1111 2333
Q ss_pred HHHhHHHHHHH-hhhccCCCCCHHHHHHHHHHHHHhhhhhhhccCcchhhhhhhhhhHHHHHHhCCCccccC
Q 007856 473 EAYNYYSVVFE-SLDATLPRESQDRMNVERQCLARDIVNIIACEGEERIERYELAGKWRARMTMAGFTSCPM 543 (587)
Q Consensus 473 EAL~yYsAlFD-SLda~lpr~s~eR~~vE~~~lgreI~NiVAcEG~eRvER~E~~~~Wr~Rm~~AGF~~vpl 543 (587)
..+.+|...+- -+...+.+ ++... .+|.+-|.+. -..+.-.+.|+.+||+-+..
T Consensus 164 ~~~~~y~~~ilP~~g~l~~~---~~~~Y--~yL~~Si~~f------------~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 164 ALYKFYFKYILPLIGRLLSG---DREAY--RYLPESIRRF------------PSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HHHHH-------------------------------------------------------------------
T ss_pred ceeeeeeccccccccccccc---ccccc--cccccccccc------------cccccccccccccccccccc
Confidence 34444444321 22222222 12222 2455444433 23345566788999987644
No 20
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=86.09 E-value=11 Score=40.31 Aligned_cols=100 Identities=20% Similarity=0.266 Sum_probs=55.0
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCC--ceEEEEeeCCCC
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGV--PFEFHAVPSKTS 401 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgv--pFeF~~V~~~~e 401 (587)
...|+|+|.|.|. +...||.+ | .++|||+.... .++...++ ++..++ ..+|.. .+.+
T Consensus 132 g~~ILDIGCG~G~----~s~~La~~-g----~~V~GID~s~~------~i~~Ar~~----~~~~~~~~~i~~~~--~dae 190 (322)
T PLN02396 132 GLKFIDIGCGGGL----LSEPLARM-G----ATVTGVDAVDK------NVKIARLH----ADMDPVTSTIEYLC--TTAE 190 (322)
T ss_pred CCEEEEeeCCCCH----HHHHHHHc-C----CEEEEEeCCHH------HHHHHHHH----HHhcCcccceeEEe--cCHH
Confidence 3479999999997 45566643 3 48999986432 22222221 222222 233332 2223
Q ss_pred CCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 402 LVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 402 ~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
++. ..++..=+|-|...|||++|. +.+|+.+ +-|+|.-.+++.
T Consensus 191 ~l~-----~~~~~FD~Vi~~~vLeHv~d~--------~~~L~~l~r~LkPGG~liis 234 (322)
T PLN02396 191 KLA-----DEGRKFDAVLSLEVIEHVANP--------AEFCKSLSALTIPNGATVLS 234 (322)
T ss_pred Hhh-----hccCCCCEEEEhhHHHhcCCH--------HHHHHHHHHHcCCCcEEEEE
Confidence 221 112223355566789999762 3566666 457998776654
No 21
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=85.52 E-value=7.7 Score=40.30 Aligned_cols=95 Identities=17% Similarity=0.200 Sum_probs=54.2
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCC
Q 007856 326 HIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTP 405 (587)
Q Consensus 326 HIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~ 405 (587)
+|+|+|.|.|. +...||.+ | .++|||+.... .-+.+.+.|+..++.+++... +.....
T Consensus 123 ~vLDlGcG~G~----~~~~la~~-g----~~V~avD~s~~----------ai~~~~~~~~~~~l~v~~~~~--D~~~~~- 180 (287)
T PRK12335 123 KALDLGCGQGR----NSLYLALL-G----FDVTAVDINQQ----------SLENLQEIAEKENLNIRTGLY--DINSAS- 180 (287)
T ss_pred CEEEeCCCCCH----HHHHHHHC-C----CEEEEEECCHH----------HHHHHHHHHHHcCCceEEEEe--chhccc-
Confidence 89999999986 33445554 2 48999986532 223445566777886655432 222111
Q ss_pred CccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEE
Q 007856 406 SMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLV 453 (587)
Q Consensus 406 ~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVV 453 (587)
+. ..=+.++.+ +.|||++++ .+..+|+.+ +.|+|.-+
T Consensus 181 --~~-~~fD~I~~~--~vl~~l~~~------~~~~~l~~~~~~LkpgG~ 218 (287)
T PRK12335 181 --IQ-EEYDFILST--VVLMFLNRE------RIPAIIKNMQEHTNPGGY 218 (287)
T ss_pred --cc-CCccEEEEc--chhhhCCHH------HHHHHHHHHHHhcCCCcE
Confidence 11 011233333 457888542 345677655 67899755
No 22
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=85.41 E-value=3.5 Score=35.48 Aligned_cols=97 Identities=26% Similarity=0.372 Sum_probs=51.8
Q ss_pred EEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCCC
Q 007856 327 IIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPS 406 (587)
Q Consensus 327 IIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~~ 406 (587)
|+|+|.|.|..-..|.+.+ .+ + |..++|||+-... .|+.+.+ ..+..+++.+| +..+..++
T Consensus 1 ILDlgcG~G~~~~~l~~~~-~~--~-~~~~~~gvD~s~~------~l~~~~~----~~~~~~~~~~~--~~~D~~~l--- 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRF-DA--G-PSSRVIGVDISPE------MLELAKK----RFSEDGPKVRF--VQADARDL--- 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS---------SEEEEEES-HH------HHHHHHH----HSHHTTTTSEE--EESCTTCH---
T ss_pred CEEeecCCcHHHHHHHHHh-hh--c-ccceEEEEECCHH------HHHHHHH----hchhcCCceEE--EECCHhHC---
Confidence 7999999998777777776 22 2 5689999996432 2333333 33335566666 44444333
Q ss_pred ccccCCCce-EEEEeccccccCCCCcccccchHHHHHHHHHh-cCC
Q 007856 407 MLECRPGEA-LVVNFAFQLHHMPDESVSTVNQRDQLLRMVKS-LNP 450 (587)
Q Consensus 407 ~L~~~~gEa-LaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~-L~P 450 (587)
....+.. +||.+...+||+.+ ..+..+|+.+.+ |+|
T Consensus 62 --~~~~~~~D~v~~~~~~~~~~~~------~~~~~ll~~~~~~l~p 99 (101)
T PF13649_consen 62 --PFSDGKFDLVVCSGLSLHHLSP------EELEALLRRIARLLRP 99 (101)
T ss_dssp --HHHSSSEEEEEE-TTGGGGSSH------HHHHHHHHHHHHTEEE
T ss_pred --cccCCCeeEEEEcCCccCCCCH------HHHHHHHHHHHHHhCC
Confidence 2223333 44444555899865 235567776543 444
No 23
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=85.29 E-value=2.2 Score=42.74 Aligned_cols=109 Identities=25% Similarity=0.288 Sum_probs=59.3
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
..++++..=.+.-+|||+|-|.|. +..+|+.+. |+||+|..+.|.... .++. .=..+
T Consensus 90 ~~~~~~~d~~~~~~vvDvGGG~G~----~~~~l~~~~---P~l~~~v~Dlp~v~~--------~~~~--------~~rv~ 146 (241)
T PF00891_consen 90 DILLEAFDFSGFKTVVDVGGGSGH----FAIALARAY---PNLRATVFDLPEVIE--------QAKE--------ADRVE 146 (241)
T ss_dssp HHHHHHSTTTTSSEEEEET-TTSH----HHHHHHHHS---TTSEEEEEE-HHHHC--------CHHH--------TTTEE
T ss_pred hhhhccccccCccEEEeccCcchH----HHHHHHHHC---CCCcceeeccHhhhh--------cccc--------ccccc
Confidence 345555554455589999999993 334444432 789999999765321 1111 21233
Q ss_pred EEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCc---EEEEEeccC
Q 007856 393 FHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPK---LVTVVEQDM 460 (587)
Q Consensus 393 F~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~Pk---VVtlvEqEa 460 (587)
|.+ .+.- +.+.. +=+|-+...||+.+|+. -..+|+.+ +.|.|. .++|+|.=.
T Consensus 147 ~~~--gd~f----~~~P~----~D~~~l~~vLh~~~d~~------~~~iL~~~~~al~pg~~g~llI~e~~~ 202 (241)
T PF00891_consen 147 FVP--GDFF----DPLPV----ADVYLLRHVLHDWSDED------CVKILRNAAAALKPGKDGRLLIIEMVL 202 (241)
T ss_dssp EEE--S-TT----TCCSS----ESEEEEESSGGGS-HHH------HHHHHHHHHHHSEECTTEEEEEEEEEE
T ss_pred ccc--ccHH----hhhcc----ccceeeehhhhhcchHH------HHHHHHHHHHHhCCCCCCeEEEEeecc
Confidence 433 2211 11222 33555566789988753 24567666 678886 666777543
No 24
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=84.25 E-value=2.9 Score=43.17 Aligned_cols=45 Identities=18% Similarity=0.220 Sum_probs=32.7
Q ss_pred cCCeeEEEecccCCccchHHHHHHHhcCCC--CCCeEEEEeecCCCc
Q 007856 321 GEKRVHIIDFDINQGSQYITLIQTIASLPG--NRPHLRLTGVDDPES 365 (587)
Q Consensus 321 g~~~VHIIDfdI~~G~QWpsLIqaLA~Rpg--gPP~LRITgI~~p~~ 365 (587)
..+.++|.|.|.+.|--.-+|--.|+..-. ..+..+|+|+|....
T Consensus 97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~ 143 (264)
T smart00138 97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLK 143 (264)
T ss_pred CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHH
Confidence 345799999999999887777666655421 234789999997543
No 25
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=83.90 E-value=6.6 Score=39.86 Aligned_cols=112 Identities=16% Similarity=0.178 Sum_probs=61.6
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEE
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEF 393 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF 393 (587)
.|++.+. .+.-+|+|+|.|.|. +...|+.+ + .++|||+.... .++.+. +.++..|+.-..
T Consensus 36 ~~l~~l~-~~~~~vLDiGcG~G~----~a~~la~~-g----~~v~~vD~s~~------~l~~a~----~~~~~~g~~~~v 95 (255)
T PRK11036 36 RLLAELP-PRPLRVLDAGGGEGQ----TAIKLAEL-G----HQVILCDLSAE------MIQRAK----QAAEAKGVSDNM 95 (255)
T ss_pred HHHHhcC-CCCCEEEEeCCCchH----HHHHHHHc-C----CEEEEEECCHH------HHHHHH----HHHHhcCCccce
Confidence 4666665 344699999999993 45566665 2 48999986432 233333 334455654333
Q ss_pred EEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 007856 394 HAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVV 456 (587)
Q Consensus 394 ~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlv 456 (587)
..+..+..++.+ ..++..=+|-|...|||+.+ +...+-...+-|+|.-.+++
T Consensus 96 ~~~~~d~~~l~~----~~~~~fD~V~~~~vl~~~~~-------~~~~l~~~~~~LkpgG~l~i 147 (255)
T PRK11036 96 QFIHCAAQDIAQ----HLETPVDLILFHAVLEWVAD-------PKSVLQTLWSVLRPGGALSL 147 (255)
T ss_pred EEEEcCHHHHhh----hcCCCCCEEEehhHHHhhCC-------HHHHHHHHHHHcCCCeEEEE
Confidence 344443333321 11122223345667888854 33334445577899866643
No 26
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=83.52 E-value=13 Score=36.13 Aligned_cols=40 Identities=15% Similarity=0.307 Sum_probs=25.7
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
.|++.+... -+|+|+|.|.|. ++..|+.+.+ .+++||+..
T Consensus 6 ~i~~~i~~~--~~iLDiGcG~G~----~~~~l~~~~~----~~~~giD~s 45 (194)
T TIGR02081 6 SILNLIPPG--SRVLDLGCGDGE----LLALLRDEKQ----VRGYGIEID 45 (194)
T ss_pred HHHHhcCCC--CEEEEeCCCCCH----HHHHHHhccC----CcEEEEeCC
Confidence 344555433 379999999995 4566765532 356899753
No 27
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=83.43 E-value=14 Score=38.75 Aligned_cols=118 Identities=14% Similarity=0.129 Sum_probs=69.7
Q ss_pred HHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEE
Q 007856 315 IIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFH 394 (587)
Q Consensus 315 ILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~ 394 (587)
|.+++. ....|||+|.|.|.-=..|+++|.. ..++|+|+-+.. .|+.+.++|.+- .-+++ +.
T Consensus 57 ia~~~~--~~~~iLELGcGtG~~t~~Ll~~l~~------~~~~~~iDiS~~------mL~~a~~~l~~~--~p~~~--v~ 118 (301)
T TIGR03438 57 IAAATG--AGCELVELGSGSSRKTRLLLDALRQ------PARYVPIDISAD------ALKESAAALAAD--YPQLE--VH 118 (301)
T ss_pred HHHhhC--CCCeEEecCCCcchhHHHHHHhhcc------CCeEEEEECCHH------HHHHHHHHHHhh--CCCce--EE
Confidence 445553 2357999999999777778888743 478999997543 356666665431 12343 44
Q ss_pred EeeCCCCCCCCCcc-ccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 395 AVPSKTSLVTPSML-ECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 395 ~V~~~~e~l~~~~L-~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
.+..+..+... .+ ....+..+++.+...+++++.+ ....+|+.| +.|+|.-..++.
T Consensus 119 ~i~gD~~~~~~-~~~~~~~~~~~~~~~gs~~~~~~~~------e~~~~L~~i~~~L~pgG~~lig 176 (301)
T TIGR03438 119 GICADFTQPLA-LPPEPAAGRRLGFFPGSTIGNFTPE------EAVAFLRRIRQLLGPGGGLLIG 176 (301)
T ss_pred EEEEcccchhh-hhcccccCCeEEEEecccccCCCHH------HHHHHHHHHHHhcCCCCEEEEe
Confidence 44443322100 00 0111246777777778888542 245788877 568997655544
No 28
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=83.17 E-value=26 Score=34.08 Aligned_cols=100 Identities=13% Similarity=0.149 Sum_probs=51.5
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSL 402 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~ 402 (587)
+..+|+|+|.|.|.-. ..|+.+- |..++|+|+.... .++...+++. -.++| +..+.++
T Consensus 34 ~~~~vLDlG~G~G~~~----~~l~~~~---~~~~~~~~D~~~~------~~~~~~~~~~-------~~~~~--~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLT----RALLKRF---PQAEFIALDISAG------MLAQAKTKLS-------ENVQF--ICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHHH----HHHHHhC---CCCcEEEEeChHH------HHHHHHHhcC-------CCCeE--Eecchhh
Confidence 3468999999999633 3333331 4567999986432 1222222221 11222 3333333
Q ss_pred CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 403 VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 403 l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
+. ..++-.=+|-+.+.|||+.| ...+|+.+ +.|+|.-++++.
T Consensus 92 ~~-----~~~~~fD~vi~~~~l~~~~~--------~~~~l~~~~~~L~~~G~l~~~ 134 (240)
T TIGR02072 92 LP-----LEDSSFDLIVSNLALQWCDD--------LSQALSELARVLKPGGLLAFS 134 (240)
T ss_pred CC-----CCCCceeEEEEhhhhhhccC--------HHHHHHHHHHHcCCCcEEEEE
Confidence 22 11121223334566888754 23566655 568998666554
No 29
>PLN02244 tocopherol O-methyltransferase
Probab=83.09 E-value=15 Score=39.34 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=55.6
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCc--eEEEEeeCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVP--FEFHAVPSKT 400 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvp--FeF~~V~~~~ 400 (587)
+.-+|+|+|.|.|. +...|+.+.+ .++|||+.... .-++..+.++..|+. .+|.. .+.
T Consensus 118 ~~~~VLDiGCG~G~----~~~~La~~~g----~~v~gvD~s~~----------~i~~a~~~~~~~g~~~~v~~~~--~D~ 177 (340)
T PLN02244 118 RPKRIVDVGCGIGG----SSRYLARKYG----ANVKGITLSPV----------QAARANALAAAQGLSDKVSFQV--ADA 177 (340)
T ss_pred CCCeEEEecCCCCH----HHHHHHHhcC----CEEEEEECCHH----------HHHHHHHHHHhcCCCCceEEEE--cCc
Confidence 34579999999985 4455666543 38999986432 122333445555653 44433 333
Q ss_pred CCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHH-HHHhcCCcEE
Q 007856 401 SLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLR-MVKSLNPKLV 453 (587)
Q Consensus 401 e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~-~Vr~L~PkVV 453 (587)
.++ ...++..=+|-+...+||++| +..+|+ ..|-|+|.-.
T Consensus 178 ~~~-----~~~~~~FD~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~ 218 (340)
T PLN02244 178 LNQ-----PFEDGQFDLVWSMESGEHMPD--------KRKFVQELARVAAPGGR 218 (340)
T ss_pred ccC-----CCCCCCccEEEECCchhccCC--------HHHHHHHHHHHcCCCcE
Confidence 222 122333335556678899976 234554 4577899743
No 30
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=82.80 E-value=15 Score=40.82 Aligned_cols=114 Identities=12% Similarity=0.090 Sum_probs=58.7
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
..|++.+...+.-+|+|+|.|.|.-- ..|+.+ ++ ++|||+.... .++.. ..+ .. ..-..+
T Consensus 27 ~~il~~l~~~~~~~vLDlGcG~G~~~----~~la~~-~~----~v~giD~s~~------~l~~a-~~~---~~-~~~~i~ 86 (475)
T PLN02336 27 PEILSLLPPYEGKSVLELGAGIGRFT----GELAKK-AG----QVIALDFIES------VIKKN-ESI---NG-HYKNVK 86 (475)
T ss_pred hHHHhhcCccCCCEEEEeCCCcCHHH----HHHHhh-CC----EEEEEeCCHH------HHHHH-HHH---hc-cCCceE
Confidence 45556665444458999999999544 344544 21 7899986432 12211 111 11 111233
Q ss_pred EEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 393 FHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 393 F~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
|.. .+..+. .+...++..=+|-|.+.|||++++ .+..+|+.+ +-|+|.-+++..
T Consensus 87 ~~~--~d~~~~---~~~~~~~~fD~I~~~~~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~ 141 (475)
T PLN02336 87 FMC--ADVTSP---DLNISDGSVDLIFSNWLLMYLSDK------EVENLAERMVKWLKVGGYIFFR 141 (475)
T ss_pred EEE--eccccc---ccCCCCCCEEEEehhhhHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence 322 222111 122222333355566789999763 235666655 558999766553
No 31
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=79.19 E-value=20 Score=35.66 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=54.1
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCC
Q 007856 326 HIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTP 405 (587)
Q Consensus 326 HIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~ 405 (587)
.|+|+|.|.|..-..|.+.+ |..++|||+.... .++.+.+++ -++. |.. ....+
T Consensus 46 ~VLDiGCG~G~~~~~L~~~~-------~~~~v~giDiS~~------~l~~A~~~~------~~~~--~~~--~d~~~--- 99 (204)
T TIGR03587 46 SILELGANIGMNLAALKRLL-------PFKHIYGVEINEY------AVEKAKAYL------PNIN--IIQ--GSLFD--- 99 (204)
T ss_pred cEEEEecCCCHHHHHHHHhC-------CCCeEEEEECCHH------HHHHHHhhC------CCCc--EEE--eeccC---
Confidence 59999999995544443322 2358999986532 233332221 1222 221 11111
Q ss_pred CccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEecc
Q 007856 406 SMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQD 459 (587)
Q Consensus 406 ~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvEqE 459 (587)
...++..=+|-+...|||++. ..+..+++.+.+..-+.++++|-.
T Consensus 100 ---~~~~~sfD~V~~~~vL~hl~p------~~~~~~l~el~r~~~~~v~i~e~~ 144 (204)
T TIGR03587 100 ---PFKDNFFDLVLTKGVLIHINP------DNLPTAYRELYRCSNRYILIAEYY 144 (204)
T ss_pred ---CCCCCCEEEEEECChhhhCCH------HHHHHHHHHHHhhcCcEEEEEEee
Confidence 111222223445667889853 235677887777777788888864
No 32
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=79.12 E-value=21 Score=35.95 Aligned_cols=111 Identities=20% Similarity=0.257 Sum_probs=60.4
Q ss_pred hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCce
Q 007856 312 NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPF 391 (587)
Q Consensus 312 NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpF 391 (587)
+..+++.+.-.+.-+|+|+|.|.|. +...|+.+. |..+++||+.... .++.+.+++ -..
T Consensus 20 ~~~ll~~~~~~~~~~vLDiGcG~G~----~~~~la~~~---~~~~v~gvD~s~~------~i~~a~~~~--------~~~ 78 (258)
T PRK01683 20 ARDLLARVPLENPRYVVDLGCGPGN----STELLVERW---PAARITGIDSSPA------MLAEARSRL--------PDC 78 (258)
T ss_pred HHHHHhhCCCcCCCEEEEEcccCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHhC--------CCC
Confidence 4566666655556789999999983 344555552 3458999996532 122222221 113
Q ss_pred EEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEec
Q 007856 392 EFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQ 458 (587)
Q Consensus 392 eF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvEq 458 (587)
+|.. .+.+++.+. +..=+|-+.+.|||++| +...+-+..+.|+|.-.+++..
T Consensus 79 ~~~~--~d~~~~~~~------~~fD~v~~~~~l~~~~d-------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 79 QFVE--ADIASWQPP------QALDLIFANASLQWLPD-------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred eEEE--CchhccCCC------CCccEEEEccChhhCCC-------HHHHHHHHHHhcCCCcEEEEEC
Confidence 3332 222222111 11113345567889875 2334444557789998777653
No 33
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=78.39 E-value=18 Score=35.58 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=34.0
Q ss_pred hhhHHhhHHHHhhhc--cCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 306 FGFMAANGAIIEAFK--GEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 306 fa~~tANqAILEA~~--g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
.++-.....+++.+. ..+.-+|+|+|.|.|. +...|+.+. .+||||+...
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~----~~~~la~~~-----~~v~gvD~s~ 87 (219)
T TIGR02021 36 EGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGL----LSIELAKRG-----AIVKAVDISE 87 (219)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCH----HHHHHHHCC-----CEEEEEECCH
Confidence 345566667777766 2456799999999985 555666541 3899998643
No 34
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=76.64 E-value=35 Score=37.86 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=62.8
Q ss_pred hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCce
Q 007856 312 NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPF 391 (587)
Q Consensus 312 NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpF 391 (587)
...+++.+.-.+.-+|+|+|.|.|. +...|+.+.+ .++|||+.+.. .++...++ +...+...
T Consensus 255 te~l~~~~~~~~~~~vLDiGcG~G~----~~~~la~~~~----~~v~gvDiS~~------~l~~A~~~----~~~~~~~v 316 (475)
T PLN02336 255 TKEFVDKLDLKPGQKVLDVGCGIGG----GDFYMAENFD----VHVVGIDLSVN------MISFALER----AIGRKCSV 316 (475)
T ss_pred HHHHHHhcCCCCCCEEEEEeccCCH----HHHHHHHhcC----CEEEEEECCHH------HHHHHHHH----hhcCCCce
Confidence 3455666543445689999999995 3445666542 38999997532 23333222 22333345
Q ss_pred EEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHH-HHHhcCCcEEEEEe
Q 007856 392 EFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLR-MVKSLNPKLVTVVE 457 (587)
Q Consensus 392 eF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~-~Vr~L~PkVVtlvE 457 (587)
+|... +..++ ...++..=+|-|...++|++| + ..+|+ ..+.|+|.-.+++.
T Consensus 317 ~~~~~--d~~~~-----~~~~~~fD~I~s~~~l~h~~d-------~-~~~l~~~~r~LkpgG~l~i~ 368 (475)
T PLN02336 317 EFEVA--DCTKK-----TYPDNSFDVIYSRDTILHIQD-------K-PALFRSFFKWLKPGGKVLIS 368 (475)
T ss_pred EEEEc--CcccC-----CCCCCCEEEEEECCcccccCC-------H-HHHHHHHHHHcCCCeEEEEE
Confidence 55432 22221 111222335556667899865 2 34555 44778999776554
No 35
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=75.96 E-value=20 Score=38.40 Aligned_cols=103 Identities=20% Similarity=0.194 Sum_probs=57.4
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHH-HHc-CCceEEEEeeCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLA-EAL-GVPFEFHAVPSKT 400 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA-~~l-gvpFeF~~V~~~~ 400 (587)
+...|+|+|.|.|. +...|+.+ | .+||||+.... .++...++..+.- ... +...+|.. .+.
T Consensus 144 ~~~~VLDlGcGtG~----~a~~la~~-g----~~V~gvD~S~~------ml~~A~~~~~~~~~~~~~~~~~~f~~--~Dl 206 (315)
T PLN02585 144 AGVTVCDAGCGTGS----LAIPLALE-G----AIVSASDISAA------MVAEAERRAKEALAALPPEVLPKFEA--NDL 206 (315)
T ss_pred CCCEEEEecCCCCH----HHHHHHHC-C----CEEEEEECCHH------HHHHHHHHHHhcccccccccceEEEE--cch
Confidence 45689999999986 44555544 2 38999987543 3444444432210 000 23345543 222
Q ss_pred CCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 007856 401 SLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVV 456 (587)
Q Consensus 401 e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlv 456 (587)
++++ +..=+|-|...|||++++ ....+++.++.+.|..+++.
T Consensus 207 ~~l~--------~~fD~Vv~~~vL~H~p~~------~~~~ll~~l~~l~~g~liIs 248 (315)
T PLN02585 207 ESLS--------GKYDTVTCLDVLIHYPQD------KADGMIAHLASLAEKRLIIS 248 (315)
T ss_pred hhcC--------CCcCEEEEcCEEEecCHH------HHHHHHHHHHhhcCCEEEEE
Confidence 2221 111133355667888763 23468888888888877664
No 36
>PRK05785 hypothetical protein; Provisional
Probab=75.64 E-value=25 Score=35.33 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=50.3
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCC
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLV 403 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l 403 (587)
.-.|+|+|.|.|.-. ..|+.+.+ .+|||||.... .|+. |+.- .+ + +..+.++
T Consensus 52 ~~~VLDlGcGtG~~~----~~l~~~~~----~~v~gvD~S~~------Ml~~--------a~~~-~~--~--~~~d~~~- 103 (226)
T PRK05785 52 PKKVLDVAAGKGELS----YHFKKVFK----YYVVALDYAEN------MLKM--------NLVA-DD--K--VVGSFEA- 103 (226)
T ss_pred CCeEEEEcCCCCHHH----HHHHHhcC----CEEEEECCCHH------HHHH--------HHhc-cc--e--EEechhh-
Confidence 347999999999443 34454432 48999996432 1222 2211 11 1 2222222
Q ss_pred CCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 404 TPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 404 ~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
+...++..=+|-+.+.|||++| .+.+|+.+ |-|+|.++ ++|
T Consensus 104 ----lp~~d~sfD~v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~-ile 145 (226)
T PRK05785 104 ----LPFRDKSFDVVMSSFALHASDN--------IEKVIAEFTRVSRKQVG-FIA 145 (226)
T ss_pred ----CCCCCCCEEEEEecChhhccCC--------HHHHHHHHHHHhcCceE-EEE
Confidence 2333343445556677899865 24556555 66789543 445
No 37
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=74.66 E-value=75 Score=31.41 Aligned_cols=103 Identities=22% Similarity=0.377 Sum_probs=52.0
Q ss_pred CCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCC
Q 007856 322 EKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTS 401 (587)
Q Consensus 322 ~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e 401 (587)
.+..+|+|+|.|.|.- ...|+.+ + .++|+|+.... .++...++ +...++..+|... ...
T Consensus 47 ~~~~~vLdiG~G~G~~----~~~l~~~-~----~~v~~iD~s~~------~~~~a~~~----~~~~~~~~~~~~~--~~~ 105 (233)
T PRK05134 47 LFGKRVLDVGCGGGIL----SESMARL-G----ADVTGIDASEE------NIEVARLH----ALESGLKIDYRQT--TAE 105 (233)
T ss_pred CCCCeEEEeCCCCCHH----HHHHHHc-C----CeEEEEcCCHH------HHHHHHHH----HHHcCCceEEEec--CHH
Confidence 3456899999998863 3344443 2 36999986432 12223222 2334555555432 222
Q ss_pred CCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHH-HHhcCCcEEEEEe
Q 007856 402 LVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRM-VKSLNPKLVTVVE 457 (587)
Q Consensus 402 ~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~-Vr~L~PkVVtlvE 457 (587)
++.. ...+-.=+|-|...++|+++ + ..+|+. .+.|+|.-.+++.
T Consensus 106 ~~~~----~~~~~fD~Ii~~~~l~~~~~-------~-~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 106 ELAA----EHPGQFDVVTCMEMLEHVPD-------P-ASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred Hhhh----hcCCCccEEEEhhHhhccCC-------H-HHHHHHHHHHcCCCcEEEEE
Confidence 2210 01121223444566777754 2 345554 4667888555443
No 38
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=71.50 E-value=87 Score=33.41 Aligned_cols=135 Identities=15% Similarity=0.054 Sum_probs=65.1
Q ss_pred HHHHHHHHhCCcchhhhHHh-------------hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEE
Q 007856 292 AAMQILFEVCPCFKFGFMAA-------------NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLT 358 (587)
Q Consensus 292 ~A~q~f~e~sP~~kfa~~tA-------------NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRIT 358 (587)
.-+..+..+.||-|-.+-.- -+.|++.+..-+.-+|+|+|.|.|.. ...++.+ |+- +++
T Consensus 78 ~l~~~l~~~~pwrkg~~~~~~~~~~~ew~s~~k~~~l~~~l~~l~g~~VLDIGCG~G~~----~~~la~~--g~~--~V~ 149 (322)
T PRK15068 78 RIENLLRALMPWRKGPFSLFGIHIDTEWRSDWKWDRVLPHLSPLKGRTVLDVGCGNGYH----MWRMLGA--GAK--LVV 149 (322)
T ss_pred HHHHHHHhhcCcccCCccccCeeecceehHHhHHHHHHHhhCCCCCCEEEEeccCCcHH----HHHHHHc--CCC--EEE
Confidence 34455666677755443321 12334444322334799999999843 2344444 222 599
Q ss_pred eecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchH
Q 007856 359 GVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQR 438 (587)
Q Consensus 359 gI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~R 438 (587)
||+.+... +.. .+...+++. .....+|.. ...+++.. ++-.=+|-|+..|||+.| ++
T Consensus 150 GiD~S~~~------l~q-~~a~~~~~~-~~~~i~~~~--~d~e~lp~------~~~FD~V~s~~vl~H~~d-------p~ 206 (322)
T PRK15068 150 GIDPSQLF------LCQ-FEAVRKLLG-NDQRAHLLP--LGIEQLPA------LKAFDTVFSMGVLYHRRS-------PL 206 (322)
T ss_pred EEcCCHHH------HHH-HHHHHHhcC-CCCCeEEEe--CCHHHCCC------cCCcCEEEECChhhccCC-------HH
Confidence 99954311 110 011111221 122344433 33333321 111113345556888754 44
Q ss_pred HHHHHHHHhcCCcEEEEEe
Q 007856 439 DQLLRMVKSLNPKLVTVVE 457 (587)
Q Consensus 439 d~~L~~Vr~L~PkVVtlvE 457 (587)
+.+-..-+.|+|.-.++.+
T Consensus 207 ~~L~~l~~~LkpGG~lvl~ 225 (322)
T PRK15068 207 DHLKQLKDQLVPGGELVLE 225 (322)
T ss_pred HHHHHHHHhcCCCcEEEEE
Confidence 4455555788998666554
No 39
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=71.21 E-value=9.2 Score=39.62 Aligned_cols=100 Identities=23% Similarity=0.369 Sum_probs=64.2
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSL 402 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~ 402 (587)
...-|+|+|.|.| .|-+.||+.- .++||||-.... ++.. ...|..-||..+|..... ++
T Consensus 59 ~g~~vLDvGCGgG----~Lse~mAr~G-----a~VtgiD~se~~------I~~A----k~ha~e~gv~i~y~~~~~--ed 117 (243)
T COG2227 59 PGLRVLDVGCGGG----ILSEPLARLG-----ASVTGIDASEKP------IEVA----KLHALESGVNIDYRQATV--ED 117 (243)
T ss_pred CCCeEEEecCCcc----HhhHHHHHCC-----CeeEEecCChHH------HHHH----HHhhhhccccccchhhhH--HH
Confidence 5577999999998 7788888762 799999964321 2221 234666677766765432 22
Q ss_pred CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHH-HHHhcCCcEEEEE
Q 007856 403 VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLR-MVKSLNPKLVTVV 456 (587)
Q Consensus 403 l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~-~Vr~L~PkVVtlv 456 (587)
+... -+-.=||-|+=.|+|+||. + .|++ ..+-++|.-+++.
T Consensus 118 l~~~-----~~~FDvV~cmEVlEHv~dp-------~-~~~~~c~~lvkP~G~lf~ 159 (243)
T COG2227 118 LASA-----GGQFDVVTCMEVLEHVPDP-------E-SFLRACAKLVKPGGILFL 159 (243)
T ss_pred HHhc-----CCCccEEEEhhHHHccCCH-------H-HHHHHHHHHcCCCcEEEE
Confidence 2211 1334478899999999873 3 3555 5577899866543
No 40
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=70.83 E-value=17 Score=31.18 Aligned_cols=105 Identities=23% Similarity=0.329 Sum_probs=55.4
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCC
Q 007856 326 HIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTP 405 (587)
Q Consensus 326 HIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~ 405 (587)
+|+|+|-|.|.-=..|.+ .+ |..++|||+.... .++...+++.+ ...+-..+|.. .+. .
T Consensus 4 ~vLDlGcG~G~~~~~l~~---~~----~~~~v~gvD~s~~------~~~~a~~~~~~--~~~~~~i~~~~--~d~-~--- 62 (112)
T PF12847_consen 4 RVLDLGCGTGRLSIALAR---LF----PGARVVGVDISPE------MLEIARERAAE--EGLSDRITFVQ--GDA-E--- 62 (112)
T ss_dssp EEEEETTTTSHHHHHHHH---HH----TTSEEEEEESSHH------HHHHHHHHHHH--TTTTTTEEEEE--SCC-H---
T ss_pred EEEEEcCcCCHHHHHHHh---cC----CCCEEEEEeCCHH------HHHHHHHHHHh--cCCCCCeEEEE--Ccc-c---
Confidence 689999999854333333 12 4568999996432 34445544422 22233444443 222 0
Q ss_pred Ccccc-CCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 406 SMLEC-RPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 406 ~~L~~-~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
..... .+=++++.+. +.+|++.+. ..+.++|+.+ +.|+|.-+++++
T Consensus 63 ~~~~~~~~~D~v~~~~-~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~lvi~ 110 (112)
T PF12847_consen 63 FDPDFLEPFDLVICSG-FTLHFLLPL-----DERRRVLERIRRLLKPGGRLVIN 110 (112)
T ss_dssp GGTTTSSCEEEEEECS-GSGGGCCHH-----HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred cCcccCCCCCEEEECC-Cccccccch-----hHHHHHHHHHHHhcCCCcEEEEE
Confidence 00111 1113455554 566666542 2356677766 578998777765
No 41
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=68.73 E-value=27 Score=34.05 Aligned_cols=97 Identities=18% Similarity=0.200 Sum_probs=51.8
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCC
Q 007856 325 VHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVT 404 (587)
Q Consensus 325 VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~ 404 (587)
-+|+|+|-|.|.- ++.=+.. . |..++|||+.... .+ ..+.+.++..|++ .+..+..+.+++.
T Consensus 44 ~~vLDiGcGtG~~--s~~la~~-~----~~~~V~~iD~s~~------~~----~~a~~~~~~~~~~-~i~~i~~d~~~~~ 105 (181)
T TIGR00138 44 KKVIDIGSGAGFP--GIPLAIA-R----PELKLTLLESNHK------KV----AFLREVKAELGLN-NVEIVNGRAEDFQ 105 (181)
T ss_pred CeEEEecCCCCcc--HHHHHHH-C----CCCeEEEEeCcHH------HH----HHHHHHHHHhCCC-CeEEEecchhhcc
Confidence 4899999999832 2211221 1 4468999986432 12 2333455666775 2444555555442
Q ss_pred CCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 405 PSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 405 ~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
. -.+=+.++.|+ +|++ +.++..+ +-|+|.-++++.
T Consensus 106 ~----~~~fD~I~s~~---~~~~-----------~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 106 H----EEQFDVITSRA---LASL-----------NVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred c----cCCccEEEehh---hhCH-----------HHHHHHHHHhcCCCCEEEEE
Confidence 1 11113555554 4443 2345543 458999777765
No 42
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=66.30 E-value=59 Score=34.83 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=55.3
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEE
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEF 393 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF 393 (587)
+|++.+...+.=+|+|+|.|.|. ++..++.+ |+ . +++||+..... +.+ -+...+++.. .-...+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~----~~~~~~~~--g~-~-~v~GiDpS~~m------l~q-~~~~~~~~~~-~~~v~~ 175 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGY----HMWRMLGH--GA-K-SLVGIDPTVLF------LCQ-FEAVRKLLDN-DKRAIL 175 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcH----HHHHHHHc--CC-C-EEEEEcCCHHH------HHH-HHHHHHHhcc-CCCeEE
Confidence 35554443334489999999986 33444443 33 2 78999965321 111 1112222211 112222
Q ss_pred EEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 007856 394 HAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVE 457 (587)
Q Consensus 394 ~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvE 457 (587)
+....+++... +..=+|-|+..|||+++ +.+.+-..-+.|+|.-.++++
T Consensus 176 --~~~~ie~lp~~------~~FD~V~s~gvL~H~~d-------p~~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 176 --EPLGIEQLHEL------YAFDTVFSMGVLYHRKS-------PLEHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred --EECCHHHCCCC------CCcCEEEEcchhhccCC-------HHHHHHHHHHhcCCCCEEEEE
Confidence 22333443321 11113445556888854 444444455679998555544
No 43
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=64.69 E-value=79 Score=32.20 Aligned_cols=100 Identities=16% Similarity=0.185 Sum_probs=49.7
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCC
Q 007856 325 VHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVT 404 (587)
Q Consensus 325 VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~ 404 (587)
=+|+|+|.|.|.-.. + ++... .+.-+||||+.... .++.+.+ .++..|++ ....+..+.+++.
T Consensus 79 ~~VLDiG~G~G~~~~-~---~a~~~--g~~~~v~gvD~s~~------~l~~A~~----~~~~~g~~-~v~~~~~d~~~l~ 141 (272)
T PRK11873 79 ETVLDLGSGGGFDCF-L---AARRV--GPTGKVIGVDMTPE------MLAKARA----NARKAGYT-NVEFRLGEIEALP 141 (272)
T ss_pred CEEEEeCCCCCHHHH-H---HHHHh--CCCCEEEEECCCHH------HHHHHHH----HHHHcCCC-CEEEEEcchhhCC
Confidence 389999998874222 1 12221 14458999986432 2333322 23445553 2222333333332
Q ss_pred CCccccCCC--ceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEE
Q 007856 405 PSMLECRPG--EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTV 455 (587)
Q Consensus 405 ~~~L~~~~g--EaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtl 455 (587)
...+ +.|+.|++ +||.++ ....|=...|-|+|.-.++
T Consensus 142 -----~~~~~fD~Vi~~~v--~~~~~d-------~~~~l~~~~r~LkpGG~l~ 180 (272)
T PRK11873 142 -----VADNSVDVIISNCV--INLSPD-------KERVFKEAFRVLKPGGRFA 180 (272)
T ss_pred -----CCCCceeEEEEcCc--ccCCCC-------HHHHHHHHHHHcCCCcEEE
Confidence 2222 34555554 567665 2233444557789985443
No 44
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=64.06 E-value=1.5e+02 Score=28.93 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=20.7
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
....|+|+|-|.|. +...|+.. + .++++|+..
T Consensus 45 ~~~~vLdlG~G~G~----~~~~l~~~-~----~~v~~iD~s 76 (224)
T TIGR01983 45 FGLRVLDVGCGGGL----LSEPLARL-G----ANVTGIDAS 76 (224)
T ss_pred CCCeEEEECCCCCH----HHHHHHhc-C----CeEEEEeCC
Confidence 35689999998884 33344443 2 249999864
No 45
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=64.01 E-value=15 Score=29.94 Aligned_cols=93 Identities=23% Similarity=0.219 Sum_probs=49.6
Q ss_pred EecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCCCc
Q 007856 328 IDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTPSM 407 (587)
Q Consensus 328 IDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~ 407 (587)
+|+|.|.|.....|.+. +-.++|+++.... .++ ...+..+..+++ .+..+.+ .
T Consensus 1 LdiG~G~G~~~~~l~~~--------~~~~v~~~D~~~~------~~~----~~~~~~~~~~~~----~~~~d~~-----~ 53 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--------GGASVTGIDISEE------MLE----QARKRLKNEGVS----FRQGDAE-----D 53 (95)
T ss_dssp EEET-TTSHHHHHHHHT--------TTCEEEEEES-HH------HHH----HHHHHTTTSTEE----EEESBTT-----S
T ss_pred CEecCcCCHHHHHHHhc--------cCCEEEEEeCCHH------HHH----HHHhcccccCch----heeehHH-----h
Confidence 57788877655555544 4468999986432 122 222233333444 2223333 3
Q ss_pred cccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEE
Q 007856 408 LECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTV 455 (587)
Q Consensus 408 L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtl 455 (587)
+...++-.=+|-+...+||+. .+..+|+.+ |-|+|.-+.+
T Consensus 54 l~~~~~sfD~v~~~~~~~~~~--------~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 54 LPFPDNSFDVVFSNSVLHHLE--------DPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp SSS-TT-EEEEEEESHGGGSS--------HHHHHHHHHHHHEEEEEEEE
T ss_pred Cccccccccccccccceeecc--------CHHHHHHHHHHHcCcCeEEe
Confidence 344455555777778899982 244555544 6788875544
No 46
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=60.28 E-value=96 Score=34.54 Aligned_cols=156 Identities=19% Similarity=0.199 Sum_probs=79.4
Q ss_pred hhhHHhhHHHHhhhccCCeeEEEecccCCccc-hHHHHHHHhc--------CCCCCCeEEEEeecCCCchhhcchHHHHH
Q 007856 306 FGFMAANGAIIEAFKGEKRVHIIDFDINQGSQ-YITLIQTIAS--------LPGNRPHLRLTGVDDPESVQRLVGGLQII 376 (587)
Q Consensus 306 fa~~tANqAILEA~~g~~~VHIIDfdI~~G~Q-WpsLIqaLA~--------RpggPP~LRITgI~~p~~~~~~~~~L~et 376 (587)
|+-+.||.. +..-.+|-|||.|+||--= =|..| +|+. +...|++...-|.-.|+.. +...+. -
T Consensus 89 Lt~~LaN~~----l~rG~~v~iiDaDvGQ~ei~pPg~I-SL~~~~s~~~~L~~l~~~~~~FvG~isP~~~--~~~~i~-~ 160 (398)
T COG1341 89 LTTYLANKL----LARGRKVAIIDADVGQSEIGPPGFI-SLAFPESPVISLSELEPFTLYFVGSISPQGF--PGRYIA-G 160 (398)
T ss_pred HHHHHHHHH----hhcCceEEEEeCCCCCcccCCCceE-EeecccCCCCCHHHcCccceEEEeccCCCCC--hHHHHH-H
Confidence 344567764 3434569999999998211 11111 1111 1124556666555555432 111222 2
Q ss_pred HHHHHHHHHHcCCceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEE
Q 007856 377 GLRLESLAEALGVPFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVV 456 (587)
Q Consensus 377 G~rL~~fA~~lgvpFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlv 456 (587)
-.||.++|++. -+.++||+.=+.+ -....+-....|...+|.+|+.+
T Consensus 161 v~rL~~~a~~~-------------------------~~~ilIdT~GWi~--------G~~g~elk~~li~~ikP~~Ii~l 207 (398)
T COG1341 161 VARLVDLAKKE-------------------------ADFILIDTDGWIK--------GWGGLELKRALIDAIKPDLIIAL 207 (398)
T ss_pred HHHHHHHhhcc-------------------------CCEEEEcCCCcee--------CchHHHHHHHHHhhcCCCEEEEe
Confidence 35777777753 1355677632222 22345666778899999999999
Q ss_pred eccCCCCCCCchHHHHHHHhHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhh
Q 007856 457 EQDMNTNTSPFFPRFIEAYNYYSVVFESLDATLPRESQDRMNVERQCLARDIV 509 (587)
Q Consensus 457 EqEan~Ns~~F~~RF~EAL~yYsAlFDSLda~lpr~s~eR~~vE~~~lgreI~ 509 (587)
|.+ |...++.+=.+...| ....++..++.-.||...=.+-+.|.+.
T Consensus 208 ~~~---~~~~~l~~~~~~~~~----~~~~~~~~~~sR~ER~~~R~e~~~ryf~ 253 (398)
T COG1341 208 ERA---NELSPLLEGVESIVY----LKVPDAVAPRSREERKELREEKYRRYFE 253 (398)
T ss_pred ccc---cccchhhhcccCceE----EeccccccccChhHHHHHHHHHHHHhcc
Confidence 874 333333333333333 3333444555555554332223444443
No 47
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=59.69 E-value=1.5e+02 Score=29.72 Aligned_cols=42 Identities=19% Similarity=0.279 Sum_probs=28.2
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
..+++.+...+.-+|+|+|.|.|. +.+.|+.+ + -++|+|+..
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~----~~~~l~~~-~----~~v~~~D~s 73 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGW----MSRYWRER-G----SQVTALDLS 73 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCH----HHHHHHHc-C----CeEEEEECC
Confidence 445566654444579999999983 55666654 2 489999864
No 48
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=55.02 E-value=94 Score=30.38 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=22.0
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
+.-+|+|+|.|.|.- ...|+.+ + .++|||+...
T Consensus 63 ~~~~vLDvGcG~G~~----~~~l~~~--~---~~v~~~D~s~ 95 (230)
T PRK07580 63 TGLRILDAGCGVGSL----SIPLARR--G---AKVVASDISP 95 (230)
T ss_pred CCCEEEEEeCCCCHH----HHHHHHc--C---CEEEEEECCH
Confidence 456899999998853 3344543 2 2499998743
No 49
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=54.56 E-value=1.7e+02 Score=29.37 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=57.3
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEE----------
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEF---------- 393 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF---------- 393 (587)
.-.|+|.|.|.|. -+..||.+ -..+|||+..... ++ ++++..|++.+.
T Consensus 38 ~~rvL~~gCG~G~----da~~LA~~-----G~~V~avD~s~~A------i~-------~~~~~~~l~~~~~~~~~~~~~~ 95 (218)
T PRK13255 38 GSRVLVPLCGKSL----DMLWLAEQ-----GHEVLGVELSELA------VE-------QFFAENGLTPQTRQSGEFEHYQ 95 (218)
T ss_pred CCeEEEeCCCChH----hHHHHHhC-----CCeEEEEccCHHH------HH-------HHHHHcCCCccccccccccccc
Confidence 3478999988882 33445654 2489999975432 22 234555654321
Q ss_pred ----EEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHh-cCCc--EEEEEe--ccCCCCC
Q 007856 394 ----HAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKS-LNPK--LVTVVE--QDMNTNT 464 (587)
Q Consensus 394 ----~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~-L~Pk--VVtlvE--qEan~Ns 464 (587)
+....+..++.++.+ +..=.|.-.-.|||++. +.|..++..|.+ |+|. +++++. .+....+
T Consensus 96 ~~~v~~~~~D~~~l~~~~~----~~fd~v~D~~~~~~l~~------~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~g 165 (218)
T PRK13255 96 AGEITIYCGDFFALTAADL----ADVDAVYDRAALIALPE------EMRERYVQQLAALLPAGCRGLLVTLDYPQEELAG 165 (218)
T ss_pred cCceEEEECcccCCCcccC----CCeeEEEehHhHhhCCH------HHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCC
Confidence 111112222211111 11122222235778864 458888888765 8999 554433 2223345
Q ss_pred CCc
Q 007856 465 SPF 467 (587)
Q Consensus 465 ~~F 467 (587)
+||
T Consensus 166 Pp~ 168 (218)
T PRK13255 166 PPF 168 (218)
T ss_pred CCC
Confidence 554
No 50
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=54.44 E-value=58 Score=34.04 Aligned_cols=114 Identities=12% Similarity=0.073 Sum_probs=63.9
Q ss_pred hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCce
Q 007856 312 NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPF 391 (587)
Q Consensus 312 NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpF 391 (587)
...|+|.+.=++.=||+|+|.| |-.+...+|++-| .++|||..+.. --+...+.++..|++=
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcG----wG~~~~~~a~~~g----~~v~gitlS~~----------Q~~~a~~~~~~~gl~~ 112 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCG----WGGLAIYAAERYG----CHVTGITLSEE----------QAEYARERIREAGLED 112 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-T----TSHHHHHHHHHH------EEEEEES-HH----------HHHHHHHHHHCSTSSS
T ss_pred HHHHHHHhCCCCCCEEEEeCCC----ccHHHHHHHHHcC----cEEEEEECCHH----------HHHHHHHHHHhcCCCC
Confidence 3445666554555699998765 6678888888853 58999986432 2234455667788874
Q ss_pred EEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEEe
Q 007856 392 EFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVVE 457 (587)
Q Consensus 392 eF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlvE 457 (587)
....+..+..++.. .-| + |-++-.+.|+..+ ....|++.| +-|+|.-..++.
T Consensus 113 ~v~v~~~D~~~~~~-----~fD-~--IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq 165 (273)
T PF02353_consen 113 RVEVRLQDYRDLPG-----KFD-R--IVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQ 165 (273)
T ss_dssp TEEEEES-GGG--------S-S-E--EEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEE
T ss_pred ceEEEEeeccccCC-----CCC-E--EEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEE
Confidence 44444444443332 222 2 2233446777532 256788877 568999777664
No 51
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=53.55 E-value=96 Score=33.99 Aligned_cols=108 Identities=17% Similarity=0.241 Sum_probs=55.4
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
..|++.+.-...=+|+|+|.|.|. +...||.+.+ .++|||+.... .++.+.++. + ++..+
T Consensus 157 ~~l~~~l~l~~g~rVLDIGcG~G~----~a~~la~~~g----~~V~giDlS~~------~l~~A~~~~----~--~l~v~ 216 (383)
T PRK11705 157 DLICRKLQLKPGMRVLDIGCGWGG----LARYAAEHYG----VSVVGVTISAE------QQKLAQERC----A--GLPVE 216 (383)
T ss_pred HHHHHHhCCCCCCEEEEeCCCccH----HHHHHHHHCC----CEEEEEeCCHH------HHHHHHHHh----c--cCeEE
Confidence 345555443444589999988774 4445565543 48999986432 233333332 2 33334
Q ss_pred EEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEEE
Q 007856 393 FHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTVV 456 (587)
Q Consensus 393 F~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtlv 456 (587)
|. ..+..++. . .=+.|+ +...++|+++. + .+.+++.+ +-|+|.-.+++
T Consensus 217 ~~--~~D~~~l~-~-----~fD~Iv--s~~~~ehvg~~-----~-~~~~l~~i~r~LkpGG~lvl 265 (383)
T PRK11705 217 IR--LQDYRDLN-G-----QFDRIV--SVGMFEHVGPK-----N-YRTYFEVVRRCLKPDGLFLL 265 (383)
T ss_pred EE--ECchhhcC-C-----CCCEEE--EeCchhhCChH-----H-HHHHHHHHHHHcCCCcEEEE
Confidence 33 22222221 0 112332 33456787542 2 34555555 66899866554
No 52
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=53.51 E-value=1.8e+02 Score=28.67 Aligned_cols=98 Identities=16% Similarity=0.145 Sum_probs=53.0
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCC
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLV 403 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l 403 (587)
.-.|+|+|-|.|.. ++. +|.+. |..++|+|+.... .-....+.++..|++- ++.+..+.+++
T Consensus 46 g~~VLDiGcGtG~~--al~--la~~~---~~~~V~giD~s~~----------~l~~A~~~~~~~~l~~-i~~~~~d~~~~ 107 (187)
T PRK00107 46 GERVLDVGSGAGFP--GIP--LAIAR---PELKVTLVDSLGK----------KIAFLREVAAELGLKN-VTVVHGRAEEF 107 (187)
T ss_pred CCeEEEEcCCCCHH--HHH--HHHHC---CCCeEEEEeCcHH----------HHHHHHHHHHHcCCCC-EEEEeccHhhC
Confidence 34689999988832 222 22221 3469999986432 2223344566677752 33344444443
Q ss_pred CCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHH-HHhcCCcEEEEEe
Q 007856 404 TPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRM-VKSLNPKLVTVVE 457 (587)
Q Consensus 404 ~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~-Vr~L~PkVVtlvE 457 (587)
.. -.+=+.++.|+. ...+.+++. .+.|+|.-.+++.
T Consensus 108 ~~----~~~fDlV~~~~~--------------~~~~~~l~~~~~~LkpGG~lv~~ 144 (187)
T PRK00107 108 GQ----EEKFDVVTSRAV--------------ASLSDLVELCLPLLKPGGRFLAL 144 (187)
T ss_pred CC----CCCccEEEEccc--------------cCHHHHHHHHHHhcCCCeEEEEE
Confidence 22 122346665531 123456665 4789999776655
No 53
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=51.64 E-value=4.3 Score=34.59 Aligned_cols=32 Identities=31% Similarity=0.529 Sum_probs=20.7
Q ss_pred EecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCch
Q 007856 328 IDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESV 366 (587)
Q Consensus 328 IDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~ 366 (587)
+|+|-|.|.==..|++.+ |..++||++.+...
T Consensus 1 LdiGcG~G~~~~~l~~~~-------~~~~~~~~D~s~~~ 32 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-------PDARYTGVDISPSM 32 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--------EEEEEEEESSSST
T ss_pred CEeCccChHHHHHHHHhC-------CCCEEEEEECCHHH
Confidence 477777775555555555 88999999976553
No 54
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=49.71 E-value=95 Score=33.49 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=58.7
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHH---cCCceEEEEe--e
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEA---LGVPFEFHAV--P 397 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~---lgvpFeF~~V--~ 397 (587)
+..+|+|++.|.|.= |..-...+ -=++.|||... ..|+++.+|..+.-+. -...+.|.+. .
T Consensus 62 ~~~~VLDl~CGkGGD---L~Kw~~~~-----i~~~vg~Dis~------~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~ 127 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGD---LQKWQKAK-----IKHYVGIDISE------ESIEEARERYKQLKKRNNSKQYRFDFIAEFIA 127 (331)
T ss_dssp TT-EEEEET-TTTTT---HHHHHHTT------SEEEEEES-H------HHHHHHHHHHHHHHTSTT-HTSEECCEEEEEE
T ss_pred CCCeEEEecCCCchh---HHHHHhcC-----CCEEEEEeCCH------HHHHHHHHHHHHhccccccccccccchhheec
Confidence 678999999999852 22222222 22577787643 3578888887555432 2233444432 2
Q ss_pred CCCCCCC-CCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEE
Q 007856 398 SKTSLVT-PSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLV 453 (587)
Q Consensus 398 ~~~e~l~-~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVV 453 (587)
.+.-... .+.+.-..+..=+|+|+|.||++-. ++.....+|+.| +.|+|.-+
T Consensus 128 ~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fe----se~~ar~~l~Nvs~~Lk~GG~ 181 (331)
T PF03291_consen 128 ADCFSESLREKLPPRSRKFDVVSCQFALHYAFE----SEEKARQFLKNVSSLLKPGGY 181 (331)
T ss_dssp STTCCSHHHCTSSSTTS-EEEEEEES-GGGGGS----SHHHHHHHHHHHHHTEEEEEE
T ss_pred cccccchhhhhccccCCCcceeehHHHHHHhcC----CHHHHHHHHHHHHHhcCCCCE
Confidence 2211100 1112222345669999999999843 222334566665 67899844
No 55
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=49.24 E-value=1.3e+02 Score=30.18 Aligned_cols=110 Identities=20% Similarity=0.205 Sum_probs=65.5
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
..|++|++--+.--++|+|-|.|.= ---||++ -..+|+|+.... .-++|.+.|+.-+++.+
T Consensus 20 s~v~~a~~~~~~g~~LDlgcG~GRN----alyLA~~-----G~~VtAvD~s~~----------al~~l~~~a~~~~l~i~ 80 (192)
T PF03848_consen 20 SEVLEAVPLLKPGKALDLGCGEGRN----ALYLASQ-----GFDVTAVDISPV----------ALEKLQRLAEEEGLDIR 80 (192)
T ss_dssp HHHHHHCTTS-SSEEEEES-TTSHH----HHHHHHT-----T-EEEEEESSHH----------HHHHHHHHHHHTT-TEE
T ss_pred HHHHHHHhhcCCCcEEEcCCCCcHH----HHHHHHC-----CCeEEEEECCHH----------HHHHHHHHHhhcCceeE
Confidence 4567777666667899999999842 1124554 268999997543 23467889999999966
Q ss_pred EEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHH-hcCCcEEEE
Q 007856 393 FHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVK-SLNPKLVTV 455 (587)
Q Consensus 393 F~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr-~L~PkVVtl 455 (587)
.... ++++.. + +++.=+|.+...+++|+.+ .++.+++.++ .++|--+.+
T Consensus 81 ~~~~--Dl~~~~-----~-~~~yD~I~st~v~~fL~~~------~~~~i~~~m~~~~~pGG~~l 130 (192)
T PF03848_consen 81 TRVA--DLNDFD-----F-PEEYDFIVSTVVFMFLQRE------LRPQIIENMKAATKPGGYNL 130 (192)
T ss_dssp EEE---BGCCBS-------TTTEEEEEEESSGGGS-GG------GHHHHHHHHHHTEEEEEEEE
T ss_pred EEEe--cchhcc-----c-cCCcCEEEEEEEeccCCHH------HHHHHHHHHHhhcCCcEEEE
Confidence 6553 222221 1 1333355566778888653 3677777775 579974443
No 56
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=48.94 E-value=1.7e+02 Score=25.07 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=21.9
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 326 HIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 326 HIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
+|+|+|.|.|.. ...|+.+. |..++|+|+...
T Consensus 22 ~vldlG~G~G~~----~~~l~~~~---~~~~v~~vD~s~ 53 (124)
T TIGR02469 22 VLWDIGAGSGSI----TIEAARLV---PNGRVYAIERNP 53 (124)
T ss_pred EEEEeCCCCCHH----HHHHHHHC---CCceEEEEcCCH
Confidence 899999998754 33334432 347899999653
No 57
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=46.99 E-value=1.2e+02 Score=29.61 Aligned_cols=99 Identities=22% Similarity=0.235 Sum_probs=51.9
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCCC
Q 007856 326 HIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVTP 405 (587)
Q Consensus 326 HIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~~ 405 (587)
+|+|+|.|.|. +...++.+. |..++|||+.+.. .++...++ ++..|+.-....+..+......
T Consensus 2 ~vLDiGcG~G~----~~~~la~~~---~~~~v~gid~s~~------~~~~a~~~----~~~~gl~~~i~~~~~d~~~~~~ 64 (224)
T smart00828 2 RVLDFGCGYGS----DLIDLAERH---PHLQLHGYTISPE------QAEVGRER----IRALGLQGRIRIFYRDSAKDPF 64 (224)
T ss_pred eEEEECCCCCH----HHHHHHHHC---CCCEEEEEECCHH------HHHHHHHH----HHhcCCCcceEEEecccccCCC
Confidence 68999988885 344555543 3468999986422 12333332 3445665444444333322111
Q ss_pred CccccCCCceEEEEeccccccCCCCcccccchHHHHHHHH-HhcCCcEEEE
Q 007856 406 SMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKLVTV 455 (587)
Q Consensus 406 ~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkVVtl 455 (587)
++-.=+|-+...+||+++ ...+|+.+ +.|+|.-.++
T Consensus 65 ------~~~fD~I~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~ 101 (224)
T smart00828 65 ------PDTYDLVFGFEVIHHIKD--------KMDLFSNISRHLKDGGHLV 101 (224)
T ss_pred ------CCCCCEeehHHHHHhCCC--------HHHHHHHHHHHcCCCCEEE
Confidence 111112334556788754 34677766 5589985543
No 58
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=46.95 E-value=2.1e+02 Score=30.87 Aligned_cols=148 Identities=10% Similarity=0.071 Sum_probs=85.1
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCc-eE
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVP-FE 392 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvp-Fe 392 (587)
.|..++. ....|||||-|.|..=..||++|..+ +. ..+-.+|+-+.+ .|++..++|. .-..| .+
T Consensus 69 ~Ia~~i~--~~~~lIELGsG~~~Kt~~LL~aL~~~-~~--~~~Y~plDIS~~------~L~~a~~~L~----~~~~p~l~ 133 (319)
T TIGR03439 69 DIAASIP--SGSMLVELGSGNLRKVGILLEALERQ-KK--SVDYYALDVSRS------ELQRTLAELP----LGNFSHVR 133 (319)
T ss_pred HHHHhcC--CCCEEEEECCCchHHHHHHHHHHHhc-CC--CceEEEEECCHH------HHHHHHHhhh----hccCCCeE
Confidence 3444443 33479999999999999999999732 22 357788886543 4677777765 12245 77
Q ss_pred EEEeeCCCCC----CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHh--cCCcEEEEEeccCCC----
Q 007856 393 FHAVPSKTSL----VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKS--LNPKLVTVVEQDMNT---- 462 (587)
Q Consensus 393 F~~V~~~~e~----l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~--L~PkVVtlvEqEan~---- 462 (587)
+++|...-.+ +.... ....-.++.-.-..+.++.. .....||+.++. |+|.=..|+--|...
T Consensus 134 v~~l~gdy~~~l~~l~~~~--~~~~~r~~~flGSsiGNf~~------~ea~~fL~~~~~~~l~~~d~lLiG~D~~k~~~~ 205 (319)
T TIGR03439 134 CAGLLGTYDDGLAWLKRPE--NRSRPTTILWLGSSIGNFSR------PEAAAFLAGFLATALSPSDSFLIGLDGCKDPDK 205 (319)
T ss_pred EEEEEecHHHHHhhccccc--ccCCccEEEEeCccccCCCH------HHHHHHHHHHHHhhCCCCCEEEEecCCCCCHHH
Confidence 8887654322 11100 11111333333334555533 124589999987 899766655545432
Q ss_pred -----CCC-CchHH-HHHHHhHHHHHHHh
Q 007856 463 -----NTS-PFFPR-FIEAYNYYSVVFES 484 (587)
Q Consensus 463 -----Ns~-~F~~R-F~EAL~yYsAlFDS 484 (587)
|++ ....+ ..+.|.+--..++.
T Consensus 206 l~~AY~d~~gvTa~FnlN~L~~~Nr~Lg~ 234 (319)
T TIGR03439 206 VLRAYNDPGGVTRRFVLNGLVHANEILGS 234 (319)
T ss_pred HHHHhcCCcchhHHHHHHHHHHHHHHhCc
Confidence 222 33333 45666666666654
No 59
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=46.73 E-value=2.1e+02 Score=30.41 Aligned_cols=112 Identities=19% Similarity=0.130 Sum_probs=68.3
Q ss_pred HhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCC
Q 007856 310 AANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGV 389 (587)
Q Consensus 310 tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgv 389 (587)
++=..|++-+.=+.--||+|+| +.|=.|+.-.|.+-| +++|||+-+.+- + ....+-++..|+
T Consensus 59 ~k~~~~~~kl~L~~G~~lLDiG----CGWG~l~~~aA~~y~----v~V~GvTlS~~Q------~----~~~~~r~~~~gl 120 (283)
T COG2230 59 AKLDLILEKLGLKPGMTLLDIG----CGWGGLAIYAAEEYG----VTVVGVTLSEEQ------L----AYAEKRIAARGL 120 (283)
T ss_pred HHHHHHHHhcCCCCCCEEEEeC----CChhHHHHHHHHHcC----CEEEEeeCCHHH------H----HHHHHHHHHcCC
Confidence 3344455555556778999986 457789999998863 699999865431 2 233334566787
Q ss_pred ceEEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHh-cCCcEE
Q 007856 390 PFEFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKS-LNPKLV 453 (587)
Q Consensus 390 pFeF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~-L~PkVV 453 (587)
+=..+++..++.++... -| .|-++=.++|+..+ | -+.|++.+++ |+|.-.
T Consensus 121 ~~~v~v~l~d~rd~~e~-----fD---rIvSvgmfEhvg~~-----~-~~~ff~~~~~~L~~~G~ 171 (283)
T COG2230 121 EDNVEVRLQDYRDFEEP-----FD---RIVSVGMFEHVGKE-----N-YDDFFKKVYALLKPGGR 171 (283)
T ss_pred CcccEEEeccccccccc-----cc---eeeehhhHHHhCcc-----c-HHHHHHHHHhhcCCCce
Confidence 74455555666665543 11 23334456777543 2 3578888865 677643
No 60
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=45.77 E-value=86 Score=32.57 Aligned_cols=110 Identities=23% Similarity=0.301 Sum_probs=64.9
Q ss_pred hhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEee
Q 007856 318 AFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVP 397 (587)
Q Consensus 318 A~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~ 397 (587)
-+.-+.---|+|+|.|-|.+= +-|+.|- |--.||||+.+.. .|++ - +......+|.-
T Consensus 25 ~Vp~~~~~~v~DLGCGpGnsT----elL~~Rw---P~A~i~GiDsS~~------Mla~-------A-a~rlp~~~f~~-- 81 (257)
T COG4106 25 RVPLERPRRVVDLGCGPGNST----ELLARRW---PDAVITGIDSSPA------MLAK-------A-AQRLPDATFEE-- 81 (257)
T ss_pred hCCccccceeeecCCCCCHHH----HHHHHhC---CCCeEeeccCCHH------HHHH-------H-HHhCCCCceec--
Confidence 344455667999999999764 4455553 5568999997532 2333 2 33344444432
Q ss_pred CCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEeccCCCC
Q 007856 398 SKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQDMNTN 463 (587)
Q Consensus 398 ~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvEqEan~N 463 (587)
.++.+.+++ .+-..|.-|.+ ||-|||. -+-|-+++-.|.|.-|.-|---.|+.
T Consensus 82 aDl~~w~p~----~~~dllfaNAv--lqWlpdH-------~~ll~rL~~~L~Pgg~LAVQmPdN~d 134 (257)
T COG4106 82 ADLRTWKPE----QPTDLLFANAV--LQWLPDH-------PELLPRLVSQLAPGGVLAVQMPDNLD 134 (257)
T ss_pred ccHhhcCCC----Cccchhhhhhh--hhhcccc-------HHHHHHHHHhhCCCceEEEECCCccC
Confidence 111111221 12235556665 4567773 35677888999999988777655544
No 61
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=45.61 E-value=40 Score=25.44 Aligned_cols=41 Identities=24% Similarity=0.426 Sum_probs=26.4
Q ss_pred ceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEecc
Q 007856 414 EALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQD 459 (587)
Q Consensus 414 EaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvEqE 459 (587)
|.+-|||....-++. .-..++.++..|+.++|+-+++|-.|
T Consensus 1 e~i~v~a~v~~~~fS-----gHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 1 EMIPVRARVEQIDFS-----GHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp CEEE--SEEEESGCS-----SS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred CEEEeEEEEEEEeec-----CCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 345677654322232 23458899999999999999998654
No 62
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=42.88 E-value=2.8e+02 Score=27.76 Aligned_cols=32 Identities=19% Similarity=0.145 Sum_probs=21.7
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
.-.|+|.|.|.|. =...||.+ | ..+|||+.+.
T Consensus 35 ~~rvLd~GCG~G~----da~~LA~~-G----~~V~gvD~S~ 66 (213)
T TIGR03840 35 GARVFVPLCGKSL----DLAWLAEQ-G----HRVLGVELSE 66 (213)
T ss_pred CCeEEEeCCCchh----HHHHHHhC-C----CeEEEEeCCH
Confidence 3489999999883 23345554 2 4899999754
No 63
>PRK06922 hypothetical protein; Provisional
Probab=42.38 E-value=1.5e+02 Score=35.15 Aligned_cols=112 Identities=14% Similarity=0.211 Sum_probs=57.4
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCC
Q 007856 325 VHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVT 404 (587)
Q Consensus 325 VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~ 404 (587)
-.|+|+|.|.|. +...|+.+. |..++|||+.+.. .++.+.+++ ...|.++++ +..+..++.
T Consensus 420 ~rVLDIGCGTG~----ls~~LA~~~---P~~kVtGIDIS~~------MLe~Ararl----~~~g~~ie~--I~gDa~dLp 480 (677)
T PRK06922 420 DTIVDVGAGGGV----MLDMIEEET---EDKRIYGIDISEN------VIDTLKKKK----QNEGRSWNV--IKGDAINLS 480 (677)
T ss_pred CEEEEeCCCCCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHh----hhcCCCeEE--EEcchHhCc
Confidence 479999999983 445566552 5679999997543 233333332 233555443 333322221
Q ss_pred CCccccCCCceEEEEeccccccCCC----Cccc-ccchHHHHHHH-HHhcCCcE-EEEEec
Q 007856 405 PSMLECRPGEALVVNFAFQLHHMPD----ESVS-TVNQRDQLLRM-VKSLNPKL-VTVVEQ 458 (587)
Q Consensus 405 ~~~L~~~~gEaLaVN~~f~Lh~L~d----esvs-~~n~Rd~~L~~-Vr~L~PkV-VtlvEq 458 (587)
. ...++.+=+|-+.+.||++.+ +... .......+|+. .+.|+|.- ++++|.
T Consensus 481 -~--~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 481 -S--SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred -c--ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 0 123343434445666787632 1100 01123455554 47899974 444453
No 64
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=39.81 E-value=1.5e+02 Score=29.13 Aligned_cols=35 Identities=11% Similarity=0.347 Sum_probs=24.6
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
+.-.|+|+|.|.|.-...|.+ +. |..++|||+...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~----~~---p~~~v~gVD~s~ 74 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAK----AN---PDINFIGIEVHE 74 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHH----HC---CCccEEEEEech
Confidence 445799999999976555533 31 446899999754
No 65
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=39.55 E-value=2.9e+02 Score=27.54 Aligned_cols=106 Identities=11% Similarity=0.135 Sum_probs=56.3
Q ss_pred eEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCCCC
Q 007856 325 VHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSLVT 404 (587)
Q Consensus 325 VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~l~ 404 (587)
-.|+|++-|.|. --|.+|+... -+||+|+.... .++.+ .+=++.+|+. ....+..+..+.-
T Consensus 55 ~~vLDl~~GsG~---l~l~~lsr~a-----~~V~~vE~~~~------a~~~a----~~Nl~~~~~~-~v~~~~~D~~~~l 115 (199)
T PRK10909 55 ARCLDCFAGSGA---LGLEALSRYA-----AGATLLEMDRA------VAQQL----IKNLATLKAG-NARVVNTNALSFL 115 (199)
T ss_pred CEEEEcCCCccH---HHHHHHHcCC-----CEEEEEECCHH------HHHHH----HHHHHHhCCC-cEEEEEchHHHHH
Confidence 368999998882 2234555421 38999975432 12222 2334445553 2333333322110
Q ss_pred CCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHh---cCCcEEEEEeccCCC
Q 007856 405 PSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKS---LNPKLVTVVEQDMNT 462 (587)
Q Consensus 405 ~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~---L~PkVVtlvEqEan~ 462 (587)
.. . -.+=+.|++|=.|+ .+.-..++..|.. |.|+-+++||.....
T Consensus 116 ~~-~-~~~fDlV~~DPPy~-----------~g~~~~~l~~l~~~~~l~~~~iv~ve~~~~~ 163 (199)
T PRK10909 116 AQ-P-GTPHNVVFVDPPFR-----------KGLLEETINLLEDNGWLADEALIYVESEVEN 163 (199)
T ss_pred hh-c-CCCceEEEECCCCC-----------CChHHHHHHHHHHCCCcCCCcEEEEEecCCC
Confidence 00 0 11225677775432 1224567787776 699999999976543
No 66
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=39.14 E-value=3.4e+02 Score=25.60 Aligned_cols=42 Identities=14% Similarity=0.241 Sum_probs=28.3
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
.|++.+.-...-+|+|+|.|.|. |...|+.+ + -++|+|+-..
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~----lt~~l~~~-~----~~v~~vE~~~ 45 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGA----LTEELLER-A----ARVTAIEIDP 45 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccH----HHHHHHhc-C----CeEEEEECCH
Confidence 45666654444489999999985 55555555 2 3899998643
No 67
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=37.61 E-value=75 Score=29.38 Aligned_cols=42 Identities=21% Similarity=0.441 Sum_probs=28.1
Q ss_pred ccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 320 KGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 320 ~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
...+..+|||||-|.|.==..|-..|... .|.++|+||+...
T Consensus 22 ~~~~~~~vvD~GsG~GyLs~~La~~l~~~---~~~~~v~~iD~~~ 63 (141)
T PF13679_consen 22 ESKRCITVVDLGSGKGYLSRALAHLLCNS---SPNLRVLGIDCNE 63 (141)
T ss_pred ccCCCCEEEEeCCChhHHHHHHHHHHHhc---CCCCeEEEEECCc
Confidence 44678999999999984222222233222 2789999999754
No 68
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=37.61 E-value=4.7e+02 Score=29.26 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=31.9
Q ss_pred ccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEee
Q 007856 331 DINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVP 397 (587)
Q Consensus 331 dI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~ 397 (587)
++.-|.==..|+..|..-...++.++|+++.... +.++ .-++..+...++|+.+||||+...+.
T Consensus 21 avSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnh-glr~--~s~~~~~~~~~~~~~l~i~~~~~~~~ 84 (436)
T PRK10660 21 AFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHH-GLSP--NADSWVKHCEQVCQQWQVPLVVERVQ 84 (436)
T ss_pred EecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeC-CCCc--chHHHHHHHHHHHHHcCCcEEEEEEe
Confidence 3344544556666665321122334555554321 1111 12233456677788888887766554
No 69
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=36.85 E-value=6.3e+02 Score=28.10 Aligned_cols=98 Identities=15% Similarity=0.096 Sum_probs=61.0
Q ss_pred CcchhhhHHhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHH
Q 007856 302 PCFKFGFMAANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLE 381 (587)
Q Consensus 302 P~~kfa~~tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~ 381 (587)
-.-+||+-.+.-+ +.. .-.||+|+..-+....=-.+-.+|.+. +..-.+-+|=.+.+.-...+ +++++
T Consensus 87 ~nG~FG~R~~~ia--~~~--g~~v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnp---l~~I~---- 154 (383)
T COG0075 87 VNGKFGERFAEIA--ERY--GAEVVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLNP---LKEIA---- 154 (383)
T ss_pred eCChHHHHHHHHH--HHh--CCceEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccCc---HHHHH----
Confidence 4667777776433 222 246899999988777767777777732 22235666666655433322 45544
Q ss_pred HHHHHcCCceEEEEeeC-CCCCCCCCccccC
Q 007856 382 SLAEALGVPFEFHAVPS-KTSLVTPSMLECR 411 (587)
Q Consensus 382 ~fA~~lgvpFeF~~V~~-~~e~l~~~~L~~~ 411 (587)
+.|+..|.=+-..+|++ --+++..+.++++
T Consensus 155 ~~~k~~g~l~iVDaVsS~Gg~~~~vd~wgiD 185 (383)
T COG0075 155 KAAKEHGALLIVDAVSSLGGEPLKVDEWGID 185 (383)
T ss_pred HHHHHcCCEEEEEecccCCCcccchhhcCcc
Confidence 56777798888888876 4456666655554
No 70
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=35.14 E-value=46 Score=34.94 Aligned_cols=27 Identities=15% Similarity=0.282 Sum_probs=21.5
Q ss_pred ccCCeeEEEecccCCccchHHHHHHHhc
Q 007856 320 KGEKRVHIIDFDINQGSQYITLIQTIAS 347 (587)
Q Consensus 320 ~g~~~VHIIDfdI~~G~QWpsLIqaLA~ 347 (587)
.|.+.+||||+|-+.+.+ ..+|.++++
T Consensus 55 ~Ga~~lHvVDLdgg~~~n-~~~i~~i~~ 81 (262)
T PLN02446 55 DGLTGGHVIMLGADDASL-AAALEALRA 81 (262)
T ss_pred CCCCEEEEEECCCCCccc-HHHHHHHHh
Confidence 578999999999877777 556777766
No 71
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=33.29 E-value=1.4e+02 Score=30.87 Aligned_cols=56 Identities=13% Similarity=0.181 Sum_probs=35.8
Q ss_pred hCCcchhhh-HHhhHHHHh----hhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 300 VCPCFKFGF-MAANGAIIE----AFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 300 ~sP~~kfa~-~tANqAILE----A~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
+.|=-++|+ |..|+.|++ .+.-.+.-+|+|+|-|.|. +...|+.+ + + ++|||+...
T Consensus 14 ~~~~k~~gq~fl~~~~i~~~i~~~l~~~~~~~VLEiG~G~G~----lt~~L~~~--~-~--~v~avE~d~ 74 (272)
T PRK00274 14 HRAKKSLGQNFLIDENILDKIVDAAGPQPGDNVLEIGPGLGA----LTEPLLER--A-A--KVTAVEIDR 74 (272)
T ss_pred CCCCcccCcCcCCCHHHHHHHHHhcCCCCcCeEEEeCCCccH----HHHHHHHh--C-C--cEEEEECCH
Confidence 345555655 556655554 3333455689999999984 55666666 2 2 899998643
No 72
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=31.75 E-value=4.3e+02 Score=25.91 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 314 AIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 314 AILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
.+++++.-.+.-+|+|+|-|.|..=..|.+.+ . +.-++++|+...
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~-~-----~~g~V~~iD~~~ 107 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAI-E-----RRGKVYTVEIVK 107 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhc-C-----CCCEEEEEeCCH
Confidence 34566554445579999998886443343333 1 112799998643
No 73
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=30.37 E-value=3.8e+02 Score=26.44 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=41.9
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEeeCCCCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVPSKTSL 402 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~~~~e~ 402 (587)
+..+|+|+|.|.|. +...|+.+. |..++|||+.... .++ ...+.++..|++ ..+.+..+..+
T Consensus 87 ~~~~ilDig~G~G~----~~~~l~~~~---~~~~v~~iD~~~~------~~~----~a~~~~~~~~~~-~~~~~~~d~~~ 148 (251)
T TIGR03534 87 GPLRVLDLGTGSGA----IALALAKER---PDARVTAVDISPE------ALA----VARKNAARLGLD-NVTFLQSDWFE 148 (251)
T ss_pred CCCeEEEEeCcHhH----HHHHHHHHC---CCCEEEEEECCHH------HHH----HHHHHHHHcCCC-eEEEEECchhc
Confidence 34589999999983 334444432 4569999986432 122 233344556765 23334333322
Q ss_pred CCCCccccCCCceEEEEeccc
Q 007856 403 VTPSMLECRPGEALVVNFAFQ 423 (587)
Q Consensus 403 l~~~~L~~~~gEaLaVN~~f~ 423 (587)
. +.-..-+.|+.|-.|.
T Consensus 149 ~----~~~~~fD~Vi~npPy~ 165 (251)
T TIGR03534 149 P----LPGGKFDLIVSNPPYI 165 (251)
T ss_pred c----CcCCceeEEEECCCCC
Confidence 1 1112235777776654
No 74
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=29.83 E-value=6.4e+02 Score=27.81 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=44.7
Q ss_pred HhhHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCC
Q 007856 310 AANGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGV 389 (587)
Q Consensus 310 tANqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgv 389 (587)
.+-+.+..++.-.+.-.|+|++-+.|.--..+.+.+- .-+|+|++.... .++.+ .+-++++|+
T Consensus 225 ~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-------~~~v~a~D~~~~------~l~~~----~~n~~r~g~ 287 (426)
T TIGR00563 225 ASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-------QAQVVALDIHEH------RLKRV----YENLKRLGL 287 (426)
T ss_pred HHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-------CCeEEEEeCCHH------HHHHH----HHHHHHcCC
Confidence 3445566666555556899999999987776666541 238999986432 24434 344566788
Q ss_pred ceEEEEee
Q 007856 390 PFEFHAVP 397 (587)
Q Consensus 390 pFeF~~V~ 397 (587)
..++..+.
T Consensus 288 ~~~v~~~~ 295 (426)
T TIGR00563 288 TIKAETKD 295 (426)
T ss_pred CeEEEEec
Confidence 75443343
No 75
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=29.29 E-value=2.5e+02 Score=27.28 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=23.0
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
.--|+|+|.|.|. ++-.||.+. |...++||+..
T Consensus 17 ~~~ilDiGcG~G~----~~~~la~~~---p~~~v~gvD~~ 49 (194)
T TIGR00091 17 APLHLEIGCGKGR----FLIDMAKQN---PDKNFLGIEIH 49 (194)
T ss_pred CceEEEeCCCccH----HHHHHHHhC---CCCCEEEEEee
Confidence 3469999999885 344555542 55689999864
No 76
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=28.59 E-value=4.4e+02 Score=29.24 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=55.5
Q ss_pred CCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCc-eEEEEeeCCC
Q 007856 322 EKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVP-FEFHAVPSKT 400 (587)
Q Consensus 322 ~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~V~~~~ 400 (587)
.+.-+|+|++-|.|. +--.||.+. -+++||+.... .++.+.+ -|+..|+. .+|. ..+.
T Consensus 296 ~~~~~VLDlgcGtG~----~sl~la~~~-----~~V~gvD~s~~------al~~A~~----n~~~~~~~~v~~~--~~d~ 354 (443)
T PRK13168 296 QPGDRVLDLFCGLGN----FTLPLARQA-----AEVVGVEGVEA------MVERARE----NARRNGLDNVTFY--HANL 354 (443)
T ss_pred CCCCEEEEEeccCCH----HHHHHHHhC-----CEEEEEeCCHH------HHHHHHH----HHHHcCCCceEEE--EeCh
Confidence 344689999999985 323455542 38999986542 2333333 34455653 3443 3333
Q ss_pred CCCCCC-ccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEec
Q 007856 401 SLVTPS-MLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVEQ 458 (587)
Q Consensus 401 e~l~~~-~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvEq 458 (587)
.+.... .+.-..=++|++|=.. ...+.++..+.+++|+-++.|.-
T Consensus 355 ~~~l~~~~~~~~~fD~Vi~dPPr-------------~g~~~~~~~l~~~~~~~ivyvSC 400 (443)
T PRK13168 355 EEDFTDQPWALGGFDKVLLDPPR-------------AGAAEVMQALAKLGPKRIVYVSC 400 (443)
T ss_pred HHhhhhhhhhcCCCCEEEECcCC-------------cChHHHHHHHHhcCCCeEEEEEe
Confidence 221110 0100112466665211 11246778888999999988863
No 77
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=28.21 E-value=1.3e+02 Score=30.01 Aligned_cols=113 Identities=12% Similarity=0.150 Sum_probs=66.9
Q ss_pred CeeEEEecccC---CccchHHHHHHHhcCCCCCCeEEE------EeecCCCchhhcchHHHHHHHHHHHHHHHcCCceEE
Q 007856 323 KRVHIIDFDIN---QGSQYITLIQTIASLPGNRPHLRL------TGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFEF 393 (587)
Q Consensus 323 ~~VHIIDfdI~---~G~QWpsLIqaLA~RpggPP~LRI------TgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF 393 (587)
.+|+||.|=-+ -+-.-..+|.+|+.+ .+.+ |||.... ....++.-+.+|+++.++.|-|
T Consensus 59 GKV~lvn~~Aswc~~c~~e~P~l~~l~~~-----~~~~~~y~~t~~IN~dd-------~~~~~~~fVk~fie~~~~~~P~ 126 (184)
T TIGR01626 59 GKVRVVHHIAGRTSAKEXNASLIDAIKAA-----KFPPVKYQTTTIINADD-------AIVGTGMFVKSSAKKGKKENPW 126 (184)
T ss_pred CCEEEEEEEecCCChhhccchHHHHHHHc-----CCCcccccceEEEECcc-------chhhHHHHHHHHHHHhcccCCc
Confidence 48999998644 456778999999655 2666 8886432 2355788899999999988877
Q ss_pred EEeeCCCCCCCCCccccCC-Cce-EEEEeccccccCCCCcccccchHHHHHHHHHhc
Q 007856 394 HAVPSKTSLVTPSMLECRP-GEA-LVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSL 448 (587)
Q Consensus 394 ~~V~~~~e~l~~~~L~~~~-gEa-LaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L 448 (587)
..+..+.........++.. .++ .+||-.=.+.+.-....+ ....+.++..|++|
T Consensus 127 ~~vllD~~g~v~~~~gv~~~P~T~fVIDk~GkVv~~~~G~l~-~ee~e~~~~li~~l 182 (184)
T TIGR01626 127 SQVVLDDKGAVKNAWQLNSEDSAIIVLDKTGKVKFVKEGALS-DSDIQTVISLVNGL 182 (184)
T ss_pred ceEEECCcchHHHhcCCCCCCceEEEECCCCcEEEEEeCCCC-HHHHHHHHHHHHHH
Confidence 6665433222222344433 255 577665444332222111 12234466666654
No 78
>PF11455 DUF3018: Protein of unknown function (DUF3018); InterPro: IPR021558 This is a bacterial family of uncharacterised proteins.
Probab=28.17 E-value=39 Score=28.37 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.0
Q ss_pred hhhhHHHHHHhCCCccccCC
Q 007856 525 LAGKWRARMTMAGFTSCPMS 544 (587)
Q Consensus 525 ~~~~Wr~Rm~~AGF~~vplS 544 (587)
+..+-|.+|+++|++|+.+.
T Consensus 4 RV~khR~~lRa~GLRPVqiW 23 (65)
T PF11455_consen 4 RVRKHRERLRAAGLRPVQIW 23 (65)
T ss_pred HHHHHHHHHHHcCCCcceee
Confidence 34566889999999998764
No 79
>COG1500 Predicted exosome subunit [Translation, ribosomal structure and biogenesis]
Probab=26.87 E-value=1.5e+02 Score=30.78 Aligned_cols=62 Identities=18% Similarity=0.282 Sum_probs=46.3
Q ss_pred CCHHH-HHHHHHHHHHhhhhhhhccCcchhhh-hhhhhhHHHHHHhCCCccccCChHHHHHHHHHHH
Q 007856 492 ESQDR-MNVERQCLARDIVNIIACEGEERIER-YELAGKWRARMTMAGFTSCPMSADVTDMIRKLIK 556 (587)
Q Consensus 492 ~s~eR-~~vE~~~lgreI~NiVAcEG~eRvER-~E~~~~Wr~Rm~~AGF~~vplS~~~~~qak~LL~ 556 (587)
.-++| .++|. -.|+|.|+|+..+.+..-+ +-+-.+=..-|..|||..-|+.+ +-.|+...|+
T Consensus 88 TaeqR~~m~e~--k~rqIi~~IsRn~IdP~t~~P~Pp~rIe~Ameeakv~id~~K~-ae~Qv~evlK 151 (234)
T COG1500 88 TAEQRREMLEE--KKRQIINIISRNAIDPQTKAPHPPARIEKAMEEAKVHIDPFKS-AEEQVQEVLK 151 (234)
T ss_pred cHHHHHHHHHH--HHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHhcCcccCCCCC-HHHHHHHHHH
Confidence 33455 46665 5899999999998866544 55666777789999999999986 4577766664
No 80
>PRK14968 putative methyltransferase; Provisional
Probab=26.83 E-value=5.2e+02 Score=24.03 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=23.3
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
+.-.|+|+|.|.|. +...|+.+ + .+|||++..
T Consensus 23 ~~~~vLd~G~G~G~----~~~~l~~~-~----~~v~~~D~s 54 (188)
T PRK14968 23 KGDRVLEVGTGSGI----VAIVAAKN-G----KKVVGVDIN 54 (188)
T ss_pred CCCEEEEEccccCH----HHHHHHhh-c----ceEEEEECC
Confidence 34469999999998 45556655 2 489999864
No 81
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=26.57 E-value=2.7e+02 Score=30.31 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=22.6
Q ss_pred CeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 323 KRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 323 ~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
...+|+|+|.|.|.-... |+.+.+ ..++|+|+..
T Consensus 113 ~~~~VLDLGcGtG~~~l~----La~~~~---~~~VtgVD~S 146 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLG----IVKHVD---AKNVTILDQS 146 (340)
T ss_pred CCCEEEEEecCCcHHHHH----HHHHCC---CCEEEEEECC
Confidence 456899999999874333 333321 1589999864
No 82
>TIGR01716 RGG_Cterm transcriptional activator, Rgg/GadR/MutR family, C-terminal domain. This model describes the whole, except for a 60 residue N-terminal helix-turn-helix DNA-binding domain (PFAM pfam01381) of the family of proteins related to the transcriptional regulator Rgg, also called RopB. Rgg is required for secretion of several proteins, including a cysteine proteinase associated with virulence. GadR is a positive regulator of a glutamate-dependent acid resistance mechanism. MutR is a transcriptional activator for mutacin biosynthesis genes in Streptococcus mutans. This family appears restricted to the low-GC Gram-positive bacteria, including at least eight members in Lactococcus lactis.
Probab=25.51 E-value=1.4e+02 Score=29.15 Aligned_cols=54 Identities=19% Similarity=0.294 Sum_probs=44.7
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHHHHhhhcCCCCChhhHHHHHHHHHHHHHhh
Q 007856 217 LKQLLIDCA-ATLSDGNIEEATTIINELRQMVSIQGDPPQRIAAYMVEGLAARMA 270 (587)
Q Consensus 217 l~~LLl~CA-~AV~~gd~~~A~~lL~~L~~~aS~~Gd~~QRLA~yFaeAL~aRl~ 270 (587)
+.++|+.|. ..+..++...|..++..|.++..|..+-..|+...|.+||..=..
T Consensus 127 i~~il~N~~~~~i~~~~~~~a~~~l~~l~~l~~~~~~~~~ki~~~f~~~l~~y~~ 181 (220)
T TIGR01716 127 VIQLLLNIAVLLIEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE 181 (220)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHc
Confidence 556666666 578889999999999999999877778889999999999875443
No 83
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=24.79 E-value=72 Score=33.34 Aligned_cols=25 Identities=16% Similarity=0.189 Sum_probs=17.9
Q ss_pred ccCCeeEEEecccCCccchHHHHHHHhcC
Q 007856 320 KGEKRVHIIDFDINQGSQYITLIQTIASL 348 (587)
Q Consensus 320 ~g~~~VHIIDfdI~~G~QWpsLIqaLA~R 348 (587)
.|.+.|||||+ +.+ ++ .+|..+++.
T Consensus 50 ~Ga~~lHvVDL--g~~-n~-~~i~~i~~~ 74 (253)
T TIGR02129 50 DGVKGCHVIML--GPN-ND-DAAKEALHA 74 (253)
T ss_pred cCCCEEEEEEC--CCC-cH-HHHHHHHHh
Confidence 47899999999 555 66 556666554
No 84
>PF04716 ETC_C1_NDUFA5: ETC complex I subunit conserved region; InterPro: IPR006806 This is a family of eukaryotic NADH-ubiquinone oxidoreductase subunits (1.6.5.3 from EC) (1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 29.9 kDa protein. The conserved region is found at the N terminus of the member proteins [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022904 respiratory electron transport chain, 0005743 mitochondrial inner membrane
Probab=24.69 E-value=1.4e+02 Score=24.23 Aligned_cols=39 Identities=18% Similarity=0.399 Sum_probs=31.9
Q ss_pred HhHHHHHHHhhhccCCCCCHHHHHHHHHHHHHhhhhhhhccC
Q 007856 475 YNYYSVVFESLDATLPRESQDRMNVERQCLARDIVNIIACEG 516 (587)
Q Consensus 475 L~yYsAlFDSLda~lpr~s~eR~~vE~~~lgreI~NiVAcEG 516 (587)
...|..+++.|. .+|.++.=|..+|+ +-++-.+||.-++
T Consensus 8 ~~lY~~~L~~L~-~~P~~a~YR~~tE~--it~~Rl~iv~~~~ 46 (57)
T PF04716_consen 8 ISLYNKTLKALK-KIPEDAAYRQYTEA--ITKHRLKIVEEEE 46 (57)
T ss_pred HHHHHHHHHHHH-hCCCccHHHHHHHH--HHHHHHHHHHccc
Confidence 346999999999 88999999999997 5677778886643
No 85
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=24.68 E-value=4.9e+02 Score=27.41 Aligned_cols=99 Identities=17% Similarity=0.298 Sum_probs=55.6
Q ss_pred eeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCc-eEEEEeeCCCCC
Q 007856 324 RVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVP-FEFHAVPSKTSL 402 (587)
Q Consensus 324 ~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~V~~~~e~ 402 (587)
.-+|+|++-|.|. +--.||.+ + -+++||+.... .++.+ .+-|+..|++ .+|.. .+.++
T Consensus 174 ~~~VLDl~cG~G~----~sl~la~~-~----~~V~gvD~s~~------av~~A----~~n~~~~~l~~v~~~~--~D~~~ 232 (315)
T PRK03522 174 PRSMWDLFCGVGG----FGLHCATP-G----MQLTGIEISAE------AIACA----KQSAAELGLTNVQFQA--LDSTQ 232 (315)
T ss_pred CCEEEEccCCCCH----HHHHHHhc-C----CEEEEEeCCHH------HHHHH----HHHHHHcCCCceEEEE--cCHHH
Confidence 3589999999985 33445543 2 27999986432 23333 3345566774 55543 33322
Q ss_pred CCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 007856 403 VTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVE 457 (587)
Q Consensus 403 l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvE 457 (587)
+... . ...-++|++| |... .--..++..+..++|+-++.+.
T Consensus 233 ~~~~-~-~~~~D~Vv~d--------PPr~----G~~~~~~~~l~~~~~~~ivyvs 273 (315)
T PRK03522 233 FATA-Q-GEVPDLVLVN--------PPRR----GIGKELCDYLSQMAPRFILYSS 273 (315)
T ss_pred HHHh-c-CCCCeEEEEC--------CCCC----CccHHHHHHHHHcCCCeEEEEE
Confidence 2111 0 0112577777 2211 1124677888999999888876
No 86
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=24.53 E-value=6e+02 Score=23.91 Aligned_cols=34 Identities=21% Similarity=0.466 Sum_probs=21.4
Q ss_pred EEEeccccccCCCCcccccchHHHHHHHH-HhcCCcE-EEEEec
Q 007856 417 VVNFAFQLHHMPDESVSTVNQRDQLLRMV-KSLNPKL-VTVVEQ 458 (587)
Q Consensus 417 aVN~~f~Lh~L~desvs~~n~Rd~~L~~V-r~L~PkV-VtlvEq 458 (587)
+|-+.+.||+++| +..+|+.+ |-|+|.- +++.|-
T Consensus 47 ~v~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d~ 82 (160)
T PLN02232 47 AVTMGYGLRNVVD--------RLRAMKEMYRVLKPGSRVSILDF 82 (160)
T ss_pred EEEecchhhcCCC--------HHHHHHHHHHHcCcCeEEEEEEC
Confidence 4445678899864 34566655 6799973 445553
No 87
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=24.11 E-value=5.2e+02 Score=28.12 Aligned_cols=97 Identities=16% Similarity=0.228 Sum_probs=53.4
Q ss_pred EEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCc-eEEEEeeCCCCCCC
Q 007856 326 HIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVP-FEFHAVPSKTSLVT 404 (587)
Q Consensus 326 HIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvp-FeF~~V~~~~e~l~ 404 (587)
+|+|++-|.|. +--.||.+ + -+++||+.... .++.+. +-|+..|+. .+| +..+.+++.
T Consensus 236 ~vLDL~cG~G~----~~l~la~~-~----~~v~~vE~~~~------av~~a~----~N~~~~~~~~~~~--~~~d~~~~~ 294 (374)
T TIGR02085 236 QMWDLFCGVGG----FGLHCAGP-D----TQLTGIEIESE------AIACAQ----QSAQMLGLDNLSF--AALDSAKFA 294 (374)
T ss_pred EEEEccCCccH----HHHHHhhc-C----CeEEEEECCHH------HHHHHH----HHHHHcCCCcEEE--EECCHHHHH
Confidence 68999888872 33344433 2 37999986432 233333 334556663 444 333332221
Q ss_pred CCccccCCCceEEEEeccccccCCCCcccccchHHHHHHHHHhcCCcEEEEEe
Q 007856 405 PSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRMVKSLNPKLVTVVE 457 (587)
Q Consensus 405 ~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~Vr~L~PkVVtlvE 457 (587)
.. +. ..-++|++|= ... ..-..++..|..++|+-++.|+
T Consensus 295 ~~-~~-~~~D~vi~DP--------Pr~----G~~~~~l~~l~~~~p~~ivyvs 333 (374)
T TIGR02085 295 TA-QM-SAPELVLVNP--------PRR----GIGKELCDYLSQMAPKFILYSS 333 (374)
T ss_pred Hh-cC-CCCCEEEECC--------CCC----CCcHHHHHHHHhcCCCeEEEEE
Confidence 11 10 1235777872 211 1224788888899999888887
No 88
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=24.05 E-value=4.8e+02 Score=28.82 Aligned_cols=119 Identities=18% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCceE
Q 007856 313 GAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPFE 392 (587)
Q Consensus 313 qAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFe 392 (587)
..+|+.+.....=+|+|+|.|.|. +--.|+.+. |..+||+|+.+.. .++.+.+.+......-.-.++
T Consensus 218 rllL~~lp~~~~~~VLDLGCGtGv----i~i~la~~~---P~~~V~~vD~S~~------Av~~A~~N~~~n~~~~~~~v~ 284 (378)
T PRK15001 218 RFFMQHLPENLEGEIVDLGCGNGV----IGLTLLDKN---PQAKVVFVDESPM------AVASSRLNVETNMPEALDRCE 284 (378)
T ss_pred HHHHHhCCcccCCeEEEEeccccH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHHHcCcccCceEE
Confidence 345555543222379999999996 334555552 6689999997532 244444444322100001234
Q ss_pred EEEeeCCC-CCCCCCccccCCCceEEEEecccccc-CCCCcccccchHHHHHHH-HHhcCCcEEEEEe
Q 007856 393 FHAVPSKT-SLVTPSMLECRPGEALVVNFAFQLHH-MPDESVSTVNQRDQLLRM-VKSLNPKLVTVVE 457 (587)
Q Consensus 393 F~~V~~~~-e~l~~~~L~~~~gEaLaVN~~f~Lh~-L~desvs~~n~Rd~~L~~-Vr~L~PkVVtlvE 457 (587)
|. ..+. +.+... .=+.|+.|-.|...+ +.+ +-..++++. -+-|+|.-...++
T Consensus 285 ~~--~~D~l~~~~~~-----~fDlIlsNPPfh~~~~~~~------~ia~~l~~~a~~~LkpGG~L~iV 339 (378)
T PRK15001 285 FM--INNALSGVEPF-----RFNAVLCNPPFHQQHALTD------NVAWEMFHHARRCLKINGELYIV 339 (378)
T ss_pred EE--EccccccCCCC-----CEEEEEECcCcccCccCCH------HHHHHHHHHHHHhcccCCEEEEE
Confidence 43 2221 112111 124777777664333 222 123345554 4578998666555
No 89
>PF15609 PRTase_2: Phosphoribosyl transferase
Probab=23.41 E-value=4.3e+02 Score=26.68 Aligned_cols=70 Identities=23% Similarity=0.429 Sum_probs=50.0
Q ss_pred hccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEee-cCCCchhhcchHHHHHHHHHHHHHHHcCCceEEEEee
Q 007856 319 FKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGV-DDPESVQRLVGGLQIIGLRLESLAEALGVPFEFHAVP 397 (587)
Q Consensus 319 ~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI-~~p~~~~~~~~~L~etG~rL~~fA~~lgvpFeF~~V~ 397 (587)
+.+.+.|=+||=.|.-|.--..+|++|-.... -.+.-+..| ++.. .+-..+..++++.+|+|.+|-.+.
T Consensus 118 l~~~~~lVLVDDEiSTG~T~lnli~al~~~~p-~~~yvvasL~d~~~---------~~~~~~~~~~~~~lgi~i~~vsL~ 187 (191)
T PF15609_consen 118 LRNARTLVLVDDEISTGNTFLNLIRALHAKYP-RKRYVVASLLDWRS---------EEDRARFEALAEELGIPIDVVSLL 187 (191)
T ss_pred hcCCCCEEEEecCccchHHHHHHHHHHHHhCC-CceEEEEEEeeCCC---------HHHHHHHHHHHHHcCCcEEEEEee
Confidence 34467999999999999999999999977632 233333333 3322 223557888999999999998765
Q ss_pred C
Q 007856 398 S 398 (587)
Q Consensus 398 ~ 398 (587)
.
T Consensus 188 ~ 188 (191)
T PF15609_consen 188 S 188 (191)
T ss_pred c
Confidence 3
No 90
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=23.23 E-value=2.7e+02 Score=24.79 Aligned_cols=19 Identities=26% Similarity=0.364 Sum_probs=16.3
Q ss_pred chHHHHHHHHHhcCCcEEE
Q 007856 436 NQRDQLLRMVKSLNPKLVT 454 (587)
Q Consensus 436 n~Rd~~L~~Vr~L~PkVVt 454 (587)
+...++...|+.|+|+-|+
T Consensus 85 SSf~EL~~Fv~~l~P~~Ii 103 (110)
T PF07522_consen 85 SSFSELKEFVSFLKPKKII 103 (110)
T ss_pred CCHHHHHHHHHhcCCcEEE
Confidence 4567899999999999876
No 91
>cd00635 PLPDE_III_YBL036c_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, YBL036c-like proteins. This family contains mostly uncharacterized proteins, widely distributed among eukaryotes, bacteria and archaea, that bear similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity.
Probab=22.98 E-value=2.7e+02 Score=27.70 Aligned_cols=70 Identities=20% Similarity=0.255 Sum_probs=39.8
Q ss_pred CeeEE-Eeccc---CCccch---HHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHc----CCce
Q 007856 323 KRVHI-IDFDI---NQGSQY---ITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEAL----GVPF 391 (587)
Q Consensus 323 ~~VHI-IDfdI---~~G~QW---psLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~l----gvpF 391 (587)
-+||| ||-|. -.|+.+ +.+++.+.. -|.|+|.||....+.........+.-+++.++++.+ |+++
T Consensus 117 ~~v~lkvdtG~~~~R~G~~~~~~~~~~~~i~~----~~~l~~~Gi~sh~s~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ 192 (222)
T cd00635 117 LDVLVQVNIGGEESKSGVAPEELEELLEEIAA----LPNLRIRGLMTIAPLTEDPEEVRPYFRELRELRDELGAKGGVNL 192 (222)
T ss_pred CcEEEEEecCCCCCCCCCCHHHHHHHHHHHHc----CCCCcEEEEEEECCCCCChHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36888 88774 368754 455555533 356899998642211111223455566666666665 5766
Q ss_pred EEEEe
Q 007856 392 EFHAV 396 (587)
Q Consensus 392 eF~~V 396 (587)
++--+
T Consensus 193 ~~is~ 197 (222)
T cd00635 193 KELSM 197 (222)
T ss_pred CEEEC
Confidence 65444
No 92
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=22.73 E-value=5.6e+02 Score=28.54 Aligned_cols=42 Identities=12% Similarity=0.234 Sum_probs=30.1
Q ss_pred HHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 315 IIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 315 ILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
+++.+.+.+.-.|||+|.|.| .++-.||.+. |...++||+..
T Consensus 114 ~~~~~~~~~~p~vLEIGcGsG----~~ll~lA~~~---P~~~~iGIEI~ 155 (390)
T PRK14121 114 FLDFISKNQEKILIEIGFGSG----RHLLYQAKNN---PNKLFIGIEIH 155 (390)
T ss_pred HHHHhcCCCCCeEEEEcCccc----HHHHHHHHhC---CCCCEEEEECC
Confidence 445566666668899999998 4556666663 56799999864
No 93
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=22.27 E-value=9e+02 Score=26.13 Aligned_cols=115 Identities=22% Similarity=0.235 Sum_probs=61.2
Q ss_pred hHHHHhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCCchhhcchHHHHHHHHHHHHHHHcCCce
Q 007856 312 NGAIIEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPESVQRLVGGLQIIGLRLESLAEALGVPF 391 (587)
Q Consensus 312 NqAILEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~~~~~~~~~L~etG~rL~~fA~~lgvpF 391 (587)
...+++.+.....=+|+|+|.|.|. +-..|+.+. |..++|+|+.... .++.+.+++. ..++..
T Consensus 185 t~lLl~~l~~~~~g~VLDlGCG~G~----ls~~la~~~---p~~~v~~vDis~~------Al~~A~~nl~----~n~l~~ 247 (342)
T PRK09489 185 SQLLLSTLTPHTKGKVLDVGCGAGV----LSAVLARHS---PKIRLTLSDVSAA------ALESSRATLA----ANGLEG 247 (342)
T ss_pred HHHHHHhccccCCCeEEEeccCcCH----HHHHHHHhC---CCCEEEEEECCHH------HHHHHHHHHH----HcCCCC
Confidence 3455666554333379999999996 444555542 5578999997532 3444444433 345665
Q ss_pred EEEEeeCCCCCCCCCccccCCCceEEEEeccccccCCCCcccccchHHHHHHH-HHhcCCcEEEE
Q 007856 392 EFHAVPSKTSLVTPSMLECRPGEALVVNFAFQLHHMPDESVSTVNQRDQLLRM-VKSLNPKLVTV 455 (587)
Q Consensus 392 eF~~V~~~~e~l~~~~L~~~~gEaLaVN~~f~Lh~L~desvs~~n~Rd~~L~~-Vr~L~PkVVtl 455 (587)
+|.. .+... .+ -.+=+.++.|-.| |...+.. ......+++. .+-|+|.-..+
T Consensus 248 ~~~~--~D~~~----~~-~~~fDlIvsNPPF--H~g~~~~---~~~~~~~i~~a~~~LkpgG~L~ 300 (342)
T PRK09489 248 EVFA--SNVFS----DI-KGRFDMIISNPPF--HDGIQTS---LDAAQTLIRGAVRHLNSGGELR 300 (342)
T ss_pred EEEE--ccccc----cc-CCCccEEEECCCc--cCCcccc---HHHHHHHHHHHHHhcCcCCEEE
Confidence 5533 22111 01 1122577777654 4433221 1223456555 46689985443
No 94
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=22.02 E-value=1.5e+02 Score=30.32 Aligned_cols=83 Identities=28% Similarity=0.406 Sum_probs=39.0
Q ss_pred hCCcch---hhhHHhhHHHHhhhccC-CeeEEEecccCCccchHHHHHHHhcC--CCCCCeEEEEeecCCCchhhcchHH
Q 007856 300 VCPCFK---FGFMAANGAIIEAFKGE-KRVHIIDFDINQGSQYITLIQTIASL--PGNRPHLRLTGVDDPESVQRLVGGL 373 (587)
Q Consensus 300 ~sP~~k---fa~~tANqAILEA~~g~-~~VHIIDfdI~~G~QWpsLIqaLA~R--pggPP~LRITgI~~p~~~~~~~~~L 373 (587)
..|+.| ..|++|=..-.++++.. -.||.|.++=..+.| +|.+.|+.- ..++-.|.++-.++
T Consensus 36 ~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~~~~~~--s~~~~L~~~~~~~~~~~~~~~~P~d----------- 102 (224)
T PF04244_consen 36 YVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDDPENTQ--SFEDALARALKQHGIDRLHVMEPGD----------- 102 (224)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-TT--S--SHHHHHHHHHHHH----EEEE--S------------
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCCccccc--cHHHHHHHHHHHcCCCEEEEECCCC-----------
Confidence 345554 45667777777777655 489999999554433 333333221 12456677776553
Q ss_pred HHHHHHHHHHHHHcCCceEEEE
Q 007856 374 QIIGLRLESLAEALGVPFEFHA 395 (587)
Q Consensus 374 ~etG~rL~~fA~~lgvpFeF~~ 395 (587)
..+.++|.++++.+||+.++..
T Consensus 103 ~~l~~~l~~~~~~~~i~~~~~~ 124 (224)
T PF04244_consen 103 YRLEQRLESLAQQLGIPLEVLE 124 (224)
T ss_dssp HHHHHHHHH----SSS-EEEE-
T ss_pred HHHHHHHHhhhcccCCceEEeC
Confidence 2367899999999999977654
No 95
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.27 E-value=3e+02 Score=29.12 Aligned_cols=39 Identities=8% Similarity=0.167 Sum_probs=23.6
Q ss_pred HhhhccCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCC
Q 007856 316 IEAFKGEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDP 363 (587)
Q Consensus 316 LEA~~g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p 363 (587)
++++.-.+.=.|+|+|-|.|.-- ..|+.+. -++++|+-.
T Consensus 29 v~~~~~~~~~~VLEIG~G~G~LT----~~Ll~~~-----~~V~avEiD 67 (294)
T PTZ00338 29 VEKAAIKPTDTVLEIGPGTGNLT----EKLLQLA-----KKVIAIEID 67 (294)
T ss_pred HHhcCCCCcCEEEEecCchHHHH----HHHHHhC-----CcEEEEECC
Confidence 33333333447999999888643 4444442 268999864
No 96
>PRK03646 dadX alanine racemase; Reviewed
Probab=21.03 E-value=2.1e+02 Score=30.99 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=25.7
Q ss_pred CeeEE-EecccC-Cccc---hHHHHHHHhcCCCCCCeEEEEeecC
Q 007856 323 KRVHI-IDFDIN-QGSQ---YITLIQTIASLPGNRPHLRLTGVDD 362 (587)
Q Consensus 323 ~~VHI-IDfdI~-~G~Q---WpsLIqaLA~RpggPP~LRITgI~~ 362 (587)
-+||| ||-|++ .|+. ++.+++.+.. .|.|+|+||-.
T Consensus 117 ~~vhLkvDTGM~R~G~~~~e~~~~~~~i~~----~~~l~~~Gi~s 157 (355)
T PRK03646 117 LDIYLKVNSGMNRLGFQPERVQTVWQQLRA----MGNVGEMTLMS 157 (355)
T ss_pred eEEEEEeeCCCCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEc
Confidence 36898 888876 4764 5666666644 36799999975
No 97
>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]
Probab=20.56 E-value=55 Score=36.03 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=11.7
Q ss_pred ccCCeeEEEecccC
Q 007856 320 KGEKRVHIIDFDIN 333 (587)
Q Consensus 320 ~g~~~VHIIDfdI~ 333 (587)
+.+..|||||||+.
T Consensus 163 k~~n~IhiiDFGmA 176 (449)
T KOG1165|consen 163 KDANVIHIIDFGMA 176 (449)
T ss_pred CCCceEEEEeccch
Confidence 45678999999985
No 98
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=20.55 E-value=8.7e+02 Score=24.35 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=24.4
Q ss_pred cCCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 321 GEKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 321 g~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
..+..+|+|+|.|.|.=-. .|+... |..++||++...
T Consensus 106 ~~~~~~vLDiG~GsG~~~~----~la~~~---~~~~v~~iDis~ 142 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIAL----ALAKER---PDAEVTAVDISP 142 (275)
T ss_pred ccCCCEEEEEcCcHHHHHH----HHHHHC---CCCEEEEEECCH
Confidence 3456789999999985333 333322 456899998643
No 99
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=20.31 E-value=9.8e+02 Score=24.85 Aligned_cols=50 Identities=22% Similarity=0.310 Sum_probs=30.7
Q ss_pred hhHHhhHHHHhhhcc--CCeeEEEecccCCccchHHHHHHHhcCCCCCCeEEEEeecCCC
Q 007856 307 GFMAANGAIIEAFKG--EKRVHIIDFDINQGSQYITLIQTIASLPGNRPHLRLTGVDDPE 364 (587)
Q Consensus 307 a~~tANqAILEA~~g--~~~VHIIDfdI~~G~QWpsLIqaLA~RpggPP~LRITgI~~p~ 364 (587)
|+..+.+-.+++++. ...-.|+|+|-|.|. |..+++.+ | + -+++||+...
T Consensus 141 G~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~----lai~aa~~-g-~--~~V~avDid~ 192 (288)
T TIGR00406 141 GTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGI----LSIAALKL-G-A--AKVVGIDIDP 192 (288)
T ss_pred CCCHHHHHHHHHHHhhcCCCCEEEEeCCChhH----HHHHHHHc-C-C--CeEEEEECCH
Confidence 355556666666542 234589999999984 33444443 2 2 2899998643
Done!