BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007858
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 7/127 (5%)
Query: 45 PLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHD 104
PL+ AA G AK +L + + +A K QT LH A TN VK ++E +
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKA---KDDQTPLHCAARIGHTNMVKLLLENNANP 106
Query: 105 NLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMA 164
NL + G+T AA G VE +L++ + + G TPL++AA +G+ ++A
Sbjct: 107 NLATTA---GHTPLHIAAREGHVETVLALLEKEASQACMTKKG-FTPLHVAAKYGKVRVA 162
Query: 165 SFLYRQN 171
L ++
Sbjct: 163 ELLLERD 169
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 69/149 (46%), Gaps = 18/149 (12%)
Query: 36 KKQYSHKCV------PLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAK 89
+K+ S C+ PL+ AA G A+ +L D A K T LHVA
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP---NAAGKNGLTPLHVAVHHN 190
Query: 90 QTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ--RNPNLLTIRGGG 147
+ VK ++ G + + NG T AA VE+A+ +LQ + N +++G
Sbjct: 191 NLDIVKLLLPRGGSPHSPAW---NGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQG-- 245
Query: 148 QMTPLYIAALFGQSKMASFLY-RQNEDNL 175
+TPL++AA G ++M + L +Q NL
Sbjct: 246 -VTPLHLAAQEGHAEMVALLLSKQANGNL 273
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/142 (29%), Positives = 66/142 (46%), Gaps = 11/142 (7%)
Query: 57 EAKRILGDDHQSMLRA--AVTKGY----QTILHVATGAKQTNFVKQMVELTGHDNLLSLQ 110
EA R DD +L A A Y +T LH+A V+ ++ G D ++
Sbjct: 8 EAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLR-NGAD--VNAV 64
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
D NG T AA++G +EI + +L+ ++ G +TPLY+AA +G ++ L +
Sbjct: 65 DTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG-ITPLYLAAYWGHLEIVEVLLKH 123
Query: 171 NEDNLEPDDLENTFF-VSIETG 191
D D T F +SI+ G
Sbjct: 124 GADVNAQDKFGKTAFDISIDIG 145
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 288 AAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATY 347
AA G+ + + VL R+ D V+ +D NG + H+A H + +++ + G D
Sbjct: 42 AAAVGHLEIVEVLLRNGAD-VNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD----VNA 96
Query: 348 VDVSGNNLLHLAAQYSN 364
D +G L+LAA + +
Sbjct: 97 KDATGITPLYLAAYWGH 113
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 5/78 (6%)
Query: 283 KLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342
K L +AA +G + +L + D + D GR+ H+A H + +++ G D
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAD-ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGAD-- 60
Query: 343 LIATYVDVSGNNLLHLAA 360
VD +G LHLAA
Sbjct: 61 --VNAVDTNGTTPLHLAA 76
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 35/106 (33%), Positives = 53/106 (50%), Gaps = 10/106 (9%)
Query: 256 LELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENG 315
LE+VK L + + KD K P L AA +G+ + + +L + D V+ D+NG
Sbjct: 15 LEVVKLLLEAGADVNAKD--KNGRTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNG 68
Query: 316 RSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQ 361
R+ H+A + H + KL+ E G D D +G LHLAA+
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 110
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 288 AAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATY 347
AA +G+ + + +L + D V+ D+NGR+ H+A + H + KL+ E G D
Sbjct: 9 AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNA 63
Query: 348 VDVSGNNLLHLAAQ 361
D +G LHLAA+
Sbjct: 64 KDKNGRTPLHLAAR 77
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH+A VK ++E G D ++ +D+NG T AA G +E+ + +L+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLE-AGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 139 NLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNED 173
++ G+ TPL++AA G ++ L D
Sbjct: 60 DVNAKDKNGR-TPLHLAARNGHLEVVKLLLEAGAD 93
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 256 LELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENG 315
LE+VK L + + KD K P L AA +G+ + + +L + D V+ D+NG
Sbjct: 48 LEVVKLLLEAGADVNAKD--KNGRTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNG 101
Query: 316 RSIFHIAVMHRHADTFKLIYEMG 338
R+ H+A + H + KL+ E G
Sbjct: 102 RTPLHLAARNGHLEVVKLLLEAG 124
Score = 32.3 bits (72), Expect = 0.82, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 314 NGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQ 361
NGR+ H+A + H + KL+ E G D D +G LHLAA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 44
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 45 PLYKAALKGDCNEAKRIL--GDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTG 102
PL+ AA G K +L G D A K +T LH+A VK ++E G
Sbjct: 38 PLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE-AG 91
Query: 103 HDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ 135
D ++ +D+NG T AA G +E+ + +L+
Sbjct: 92 AD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 70 LRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEI 129
+ A ++ QT L +A + + VK ++ N+ QD++G+TA A G EI
Sbjct: 175 INAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV---QDDDGSTALMCACEHGHKEI 231
Query: 130 AQFMLQRNPNL---LTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
A +L P+ LT R G T L +A GQS++AS LY +
Sbjct: 232 AGLLLAV-PSCDISLTDRDGS--TALMVALDAGQSEIASMLYSR 272
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
D GNT AA +EI + +L+ ++ G TPL++AALFG ++ L +
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS-TPLHLAALFGHLEIVEVLLKH 102
Query: 171 NEDNLEPDDLENTFF-VSIETG 191
D D T F +SI+ G
Sbjct: 103 GADVNAQDKFGKTAFDISIDNG 124
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 288 AAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATY 347
AA +G+ + + +L + D V+ D+NGR+ H+A + H + KL+ E G D
Sbjct: 9 AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD----VNA 63
Query: 348 VDVSGNNLLHLAAQ 361
D +G LHLAA+
Sbjct: 64 KDKNGRTPLHLAAR 77
Score = 35.4 bits (80), Expect = 0.099, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 4/89 (4%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH+A VK ++E G D ++ +D+NG T AA G +E+ + +L+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLE-AGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 139 NLLTIRGGGQMTPLYIAALFGQSKMASFL 167
++ G+ TPL++AA G ++ L
Sbjct: 60 DVNAKDKNGR-TPLHLAARNGHLEVVKLL 87
Score = 33.5 bits (75), Expect = 0.30, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 256 LELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENG 315
LE+VK L + + KD K P L AA +G+ + + +L + D V+ D+NG
Sbjct: 15 LEVVKLLLEAGADVNAKD--KNGRTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNG 68
Query: 316 RSIFHIAVMHRHADTFKLIYEMG 338
R+ H+A + H + KL+ E G
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAG 91
Score = 32.3 bits (72), Expect = 0.78, Method: Composition-based stats.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 314 NGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQ 361
NGR+ H+A + H + KL+ E G D D +G LHLAA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 44
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 29/93 (31%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 45 PLYKAALKGDCNEAKRIL--GDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTG 102
PL+ AA G K +L G D A K +T LH+A VK ++E G
Sbjct: 5 PLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE-AG 58
Query: 103 HDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ 135
D ++ +D+NG T AA G +E+ + +L+
Sbjct: 59 AD--VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 39.7 bits (91), Expect = 0.005, Method: Composition-based stats.
Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 5/113 (4%)
Query: 80 TILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPN 139
T LH+A Q V+ +++ G D ++ D G T AA G +EI + +L+ +
Sbjct: 41 TPLHLAAANGQLEIVEVLLK-NGAD--VNASDSAGITPLHLAAYDGHLEIVEVLLKHGAD 97
Query: 140 LLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFF-VSIETG 191
+ G TPL++AAL GQ ++ L + D D L T F +SI G
Sbjct: 98 VNAYDRAG-WTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQG 149
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 12/106 (11%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDEN--GNTAFCFAAAVGSVEIAQFMLQR 136
+T L VA N + ++VE N L+D++ G+TA +A + IA+ +L +
Sbjct: 36 RTPLMVACMLGMENAIDKLVE-----NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK 90
Query: 137 NPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ----NEDNLEPD 178
N+ T G+ TPL + +FG S+M+ FL N+ NLE +
Sbjct: 91 GSNVNTKDFSGK-TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGE 135
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 40/142 (28%), Positives = 62/142 (43%), Gaps = 11/142 (7%)
Query: 57 EAKRILGDDHQSMLRA------AVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQ 110
EA R DD +L A A T LH+A V+ +++ G D ++
Sbjct: 20 EAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLK-NGAD--VNAV 76
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
D G T AA G +EI + +L+ ++ G TPL++AA+FG ++ L +
Sbjct: 77 DHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGH-TPLHLAAMFGHLEIVEVLLKN 135
Query: 171 NEDNLEPDDLENTFF-VSIETG 191
D D T F +SI+ G
Sbjct: 136 GADVNAQDKFGKTAFDISIDNG 157
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 37.0 bits (84), Expect = 0.028, Method: Composition-based stats.
Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 25/169 (14%)
Query: 278 ISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM 337
+S+ K L +AA +GN + L + D V+ D +G++ H+A + H + KL+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQ 59
Query: 338 GFDKELIATYVDVSGNNLLHLAA-------------QYSNPKPISKVPGAALEMQQELKT 384
G D D G LHLAA Q ++P L + E
Sbjct: 60 GAD----PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE-NG 114
Query: 385 FKEVETIV--KPSFKEMKNNDGKTPWELF----TDEHKTLLEEAEKWMK 427
KEV ++ + + ++DG+TP +L +E LLE+ W++
Sbjct: 115 HKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 16/109 (14%)
Query: 267 SKSTHKDVLKLI-----------SKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENG 315
+++ HK+V+KL+ S L AA +G+ + + +L D + D +G
Sbjct: 45 AENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDG 103
Query: 316 RSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSN 364
++ H+A + H + KL+ G D D G L LA ++ N
Sbjct: 104 KTPLHLAAENGHKEVVKLLLSQGAD----PNTSDSDGRTPLDLAREHGN 148
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 68 SMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSV 127
S + A V Y+T A + Q++E D + DENG TA F A +GS
Sbjct: 35 SYIAADVVSEYETPWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVAGLGSD 90
Query: 128 EIAQFMLQRNPNL--LTIRGGGQMTPLYIAALFGQSKMASFLYRQNED 173
+ + + + +L +RGG +T L++AA + + ++ L D
Sbjct: 91 KCVRLLAEAGADLDHRDMRGG--LTALHMAAGYVRPEVVEALVELGAD 136
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 36.6 bits (83), Expect = 0.044, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 60/135 (44%), Gaps = 25/135 (18%)
Query: 45 PLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGY---------QTILHVATGAKQTNFVK 95
PL+ AA +G H+ +++ ++KG +T LH A VK
Sbjct: 40 PLHYAAKEG------------HKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 96 QMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIA 155
++ G D ++ +D +G T +AA G EI + ++ + ++ T G+ TPL +A
Sbjct: 88 LLIS-KGAD--VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSDSDGR-TPLDLA 143
Query: 156 ALFGQSKMASFLYRQ 170
G ++ L +Q
Sbjct: 144 REHGNEEIVKLLEKQ 158
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 39/144 (27%), Positives = 60/144 (41%), Gaps = 25/144 (17%)
Query: 278 ISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM 337
+S+ K L +AA +GN + L + D V+ D +GR+ H A H + KL+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHYAAKEGHKEIVKLLISK 59
Query: 338 GFDKELIATYVDVSGNNLLHLAAQYSNPKPISKVPGAALEMQQELKTFKEVETIVKPSFK 397
G D D G LH AA+ + K I K+ I K +
Sbjct: 60 GAD----VNAKDSDGRTPLHYAAKEGH-KEIVKL------------------LISKGADV 96
Query: 398 EMKNNDGKTPWELFTDE-HKTLLE 420
K++DG+TP E HK +++
Sbjct: 97 NAKDSDGRTPLHYAAKEGHKEIVK 120
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 94 VKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLY 153
VK ++E G D ++ D +G T +AA G EI + ++ + ++ G+ TPL+
Sbjct: 20 VKDLIE-NGAD--VNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGR-TPLH 75
Query: 154 IAALFGQSKMASFLYRQNED 173
AA G ++ L + D
Sbjct: 76 YAAKEGHKEIVKLLISKGAD 95
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 36.2 bits (82), Expect = 0.057, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 110 QDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYR 169
+D++G T AA G +EI + +L+ ++ G TPL++AAL+G ++ L +
Sbjct: 43 EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD-TPLHLAALYGHLEIVEVLLK 101
Query: 170 QNED 173
D
Sbjct: 102 NGAD 105
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/83 (27%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 110 QDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYR 169
+D+ G T AA +EI + +L+ ++ I G+ TPL++ A++G ++ L +
Sbjct: 43 EDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGE-TPLHLVAMYGHLEIVEVLLK 101
Query: 170 QNEDNLEPDDLENTFF-VSIETG 191
D D T F +SI+ G
Sbjct: 102 HGADVNAQDKFGKTAFDISIDNG 124
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
D +G T AA G +EI + +L+ ++ I G TPL++AAL G ++ L +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS-TPLHLAALIGHLEIVEVLLKH 102
Query: 171 NED 173
D
Sbjct: 103 GAD 105
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 76 KGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ 135
+G T LH A + + V+ ++ G D +L + +NG T F AA GSV++ + L
Sbjct: 57 EGGWTPLHNAVQMSREDIVELLLR-HGADPVL--RKKNGATPFILAAIAGSVKLLKLFLS 113
Query: 136 RNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
+ ++ G T AA++G+ K FLY++
Sbjct: 114 KGADVNECDFYG-FTAFMEAAVYGKVKALKFLYKR 147
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 71 RAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIA 130
RAAV + +L A + + V+Q++E G N+ ++E G T A + +I
Sbjct: 20 RAAVEDNH--LLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIV 75
Query: 131 QFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIET 190
+ +L+ + + + G TP +AA+ G K+ + D E D T F +E
Sbjct: 76 ELLLRHGADPVLRKKNG-ATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAF--MEA 132
Query: 191 GLYG 194
+YG
Sbjct: 133 AVYG 136
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 10/103 (9%)
Query: 256 LELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENG 315
LE+V+ L K + D L S P L AAH G+ + + VL ++ D V+ D+NG
Sbjct: 60 LEIVEVLLKNGADVNAYDTLG--STPLHL---AAHFGHLEIVEVLLKNGAD-VNAKDDNG 113
Query: 316 RSIFHIAVMHRHADTFKLIYEMGFD----KELIATYVDVSGNN 354
+ H+A H + +++ + G D + T D+S NN
Sbjct: 114 ITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINN 156
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
D G T AA G +EI + +L+ ++ G TPL++AA FG ++ L +
Sbjct: 44 DVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGS-TPLHLAAHFGHLEIVEVLLKN 102
Query: 171 NEDNLEPDD 179
D DD
Sbjct: 103 GADVNAKDD 111
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 9/114 (7%)
Query: 68 SMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSV 127
S + A V Y+T A + Q++E D + DENG TA F A +GS
Sbjct: 34 SYIAADVVSEYETPWWTAARKADEQALSQLLE----DRDVDAVDENGRTALLFVAGLGSD 89
Query: 128 EIAQFMLQRNPNL--LTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDD 179
+ + + + +L +RGG +T L++AA + + ++ L D +E +D
Sbjct: 90 KCVRLLAEAGADLDHRDMRGG--LTALHMAAGYVRPEVVEALVELGAD-IEVED 140
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
D +G T AA G +EI + +L+ ++ I G TPL++AAL G ++ L +
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS-TPLHLAALIGHLEIVEVLLKH 102
Query: 171 NED 173
D
Sbjct: 103 GAD 105
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 104 DNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ--RNPNLLTIRGGGQMTPLYIAALFGQS 161
DNL++ DE G T +A+A G +E +F+L+ +P++L + + L +A+ G +
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE---RESALSLASTGGYT 82
Query: 162 KMASFLYRQNED 173
+ L ++ D
Sbjct: 83 DIVGLLLERDVD 94
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 48/95 (50%), Gaps = 4/95 (4%)
Query: 76 KGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ 135
+G T LH A + + V+ ++ G D +L + +NG T F AA GSV++ + L
Sbjct: 37 EGGWTPLHNAVQMSREDIVELLLR-HGADPVL--RKKNGATPFLLAAIAGSVKLLKLFLS 93
Query: 136 RNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170
+ ++ G T AA++G+ K FLY++
Sbjct: 94 KGADVNECDFYG-FTAFMEAAVYGKVKALKFLYKR 127
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 104 DNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ--RNPNLLTIRGGGQMTPLYIAALFGQS 161
DNL++ DE G T +A+A G +E +F+L+ +P++L + + L +A+ G +
Sbjct: 26 DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKE---RESALSLASTGGYT 82
Query: 162 KMASFLYRQNED 173
+ L ++ D
Sbjct: 83 DIVGLLLERDVD 94
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 103 HDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQR--NPNLLTIRGGGQMTPLYIAALFGQ 160
+N+++ DE G T +AAA G + + +F+LQ +P LL G G+ + L +A G
Sbjct: 25 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGY 81
Query: 161 SKMASFLYRQNEDNLEPD 178
+ + L D E D
Sbjct: 82 TDIVKMLLDCGVDVNEYD 99
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH A VK +V G + QDE+G T AA G +E+ +++Q+
Sbjct: 280 RTALHYAAQVSNXPIVKYLVGEKGSNK--DKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 139 NLLTI 143
++ +
Sbjct: 338 SVEAV 342
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 42/114 (36%), Gaps = 25/114 (21%)
Query: 308 VHQLDENGRSIFHIAVMHRHAD---TFKLIYEMG----FDKELIATYVDVSGNNLLHLAA 360
+ +LD NG + I + D + KL+ E G +D G LH AA
Sbjct: 228 IEELDRNGXTALXIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA 287
Query: 361 QYSNPKPISKVPGAALEMQQELKTFKEVETIVKPSFKEMKNNDGKTPWELFTDE 414
Q SN + + G K S K+ ++ DGKTP L E
Sbjct: 288 QVSNXPIVKYLVGE------------------KGSNKDKQDEDGKTPIXLAAQE 323
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 104 DNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQR--NPNLLTIRGGGQMTPLYIAALFGQS 161
+N+++ DE G T +AAA G + + +F+LQ +P LL G G+ + L +A G +
Sbjct: 24 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGYT 80
Query: 162 KMASFLYRQNEDNLEPD 178
+ L D E D
Sbjct: 81 DIVKMLLDCGVDVNEYD 97
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 33.5 bits (75), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 103 HDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQR--NPNLLTIRGGGQMTPLYIAALFGQ 160
+N+++ DE G T +AAA G + + +F+LQ +P LL G G+ + L +A G
Sbjct: 41 QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL---GKGRESALSLACSKGY 97
Query: 161 SKMASFL 167
+ + L
Sbjct: 98 TDIVKML 104
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH+A +++ K+++E + N+ QD G T A + + + Q +++
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 139 NLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDL 180
L R TPL +AA M L + D DDL
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 124
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 74 VTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFM 133
VT+ T LH+A + F+ ++ + L LQ++ G TA AA +G + +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 134 LQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFV 186
+L GG T L++A A L + + P D +T+
Sbjct: 65 YAAGAGVLVAERGGH-TALHLACRVRAHTCACVLLQPRPSH--PRDASDTYLT 114
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Query: 74 VTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFM 133
VT+ T LH+A + F+ ++ + L LQ++ G TA AA +G + +
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 134 LQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFV 186
+L GG T L++A A L + + P D +T+
Sbjct: 65 YAAGAGVLVAERGGH-TALHLACRVRAHTCACVLLQPRPSH--PRDASDTYLT 114
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 3/101 (2%)
Query: 80 TILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPN 139
T LH+A +++ K+++E + N+ QD G T A + + + Q +++
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRAT 115
Query: 140 LLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDL 180
L R TPL +AA M L + D DDL
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 41/168 (24%), Positives = 70/168 (41%), Gaps = 23/168 (13%)
Query: 278 ISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM 337
+S+ K L +AA +GN + L + D V+ D +GR+ H A + H + KL+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAENGHKEVVKLLISK 59
Query: 338 GFDKELIATYVDVSGNNLLHLAAQYSNPKPISKVPGAALEMQQE------------LKTF 385
G D D G LH AA+ + + + + ++ +
Sbjct: 60 GAD----VNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGH 115
Query: 386 KEVET--IVKPSFKEMKNNDGKTPWELF----TDEHKTLLEEAEKWMK 427
KEV I K + ++DG+TP +L +E LLE+ W++
Sbjct: 116 KEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.1 bits (74), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 50/134 (37%), Gaps = 18/134 (13%)
Query: 67 QSMLRAAVTKGYQTILH--VATGAK----------------QTNFVKQMVELTGHDNLLS 108
+S L AA G+ I H V GA + N ++ + L L+
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 109 LQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLY 168
+D G+T AA G E+ Q++L + + G TP+ A + + L
Sbjct: 72 PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
Query: 169 RQNEDNLEPDDLEN 182
+ D D+ EN
Sbjct: 132 SKGSDINIRDNEEN 145
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH+A +++ K+++E + N+ QD G T A + + + Q +++
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 139 NLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDL 180
L R TPL +AA M L + D DDL
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 156
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 3/102 (2%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH+A +++ K+++E + N+ QD G T A + + + Q +++
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASADANI---QDNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 139 NLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDL 180
L R TPL +AA M L + D DDL
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDL 157
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 288 AAHSGNFKFLAVLTRS--YPDL---VHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342
A G + VLT+S P L + + NG + H+A +H + +L+ +G D
Sbjct: 82 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-- 139
Query: 343 LIATYVDVSGNNLLHLAAQYSNPKPIS 369
+ +G LHLA NP +S
Sbjct: 140 -VNAQEPCNGRTALHLAVDLQNPDLVS 165
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 8/87 (9%)
Query: 288 AAHSGNFKFLAVLTRS--YPDL---VHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342
A G + VLT+S P L + + NG + H+A +H + +L+ +G D
Sbjct: 85 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-- 142
Query: 343 LIATYVDVSGNNLLHLAAQYSNPKPIS 369
+ +G LHLA NP +S
Sbjct: 143 -VNAQEPCNGRTALHLAVDLQNPDLVS 168
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 32.3 bits (72), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 43/102 (42%), Gaps = 3/102 (2%)
Query: 79 QTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNP 138
+T LH+A +++ K+++E + +QD G T A + + + Q +L+
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASAD---AXIQDNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 139 NLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDL 180
L R TPL +AA M L + D DDL
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDL 121
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 32.0 bits (71), Expect = 0.90, Method: Composition-based stats.
Identities = 33/135 (24%), Positives = 55/135 (40%), Gaps = 25/135 (18%)
Query: 45 PLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGY---------QTILHVATGAKQTNFVK 95
PL+ AA G H+ +++ ++KG +T LH A VK
Sbjct: 40 PLHYAAENG------------HKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVK 87
Query: 96 QMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIA 155
++ N +D +G T +AA G EI + +L + + T G+ TPL +A
Sbjct: 88 LLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGR-TPLDLA 143
Query: 156 ALFGQSKMASFLYRQ 170
G ++ L +Q
Sbjct: 144 REHGNEEIVKLLEKQ 158
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 45/170 (26%), Positives = 72/170 (42%), Gaps = 27/170 (15%)
Query: 278 ISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM 337
+S+ K L +AA +GN + L + D + D +GR+ H A + H + KL+
Sbjct: 1 MSELGKRLIEAAENGNKDRVKDLLENGAD-PNASDSDGRTPLHYAAENGHKEIVKLLLSK 59
Query: 338 GFDKELIATYVDVSGNNLLHLAAQYSNPKPISKV-------PGAA-------LEMQQELK 383
G D D G LH AA+ + K I K+ P A L E
Sbjct: 60 GAD----PNAKDSDGRTPLHYAAENGH-KEIVKLLLSKGADPNAKDSDGRTPLHYAAE-N 113
Query: 384 TFKEVETIV--KPSFKEMKNNDGKTPWELF----TDEHKTLLEEAEKWMK 427
KE+ ++ K + ++DG+TP +L +E LLE+ W++
Sbjct: 114 GHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEKQGGWLE 163
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 6/84 (7%)
Query: 111 DENGNTAFCFAAAVGSVEIAQFMLQR--NPNLLTIRGGGQMTPLYIAALFGQSKMASFLY 168
D +G T +AA G EI + +L + +PN G TPL+ AA G ++ L
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDG---RTPLHYAAENGHKEIVKLLL 90
Query: 169 RQNED-NLEPDDLENTFFVSIETG 191
+ D N + D + E G
Sbjct: 91 SKGADPNAKDSDGRTPLHYAAENG 114
>pdb|2XTZ|A Chain A, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|B Chain B, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
pdb|2XTZ|C Chain C, Crystal Structure Of The G Alpha Protein Atgpa1 From
Arabidopsis Thaliana
Length = 354
Score = 32.0 bits (71), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 88/197 (44%), Gaps = 50/197 (25%)
Query: 332 KLIYEMGFDKELIATYVDVSGNN------LLHL-----------AAQY-------SNPKP 367
KL+++ GFD+ + +YV V N LLH +A+Y + +
Sbjct: 30 KLLFQTGFDEGELKSYVPVIHANVYQTIKLLHDGTKEFAQNETDSAKYMLSSESIAIGEK 89
Query: 368 ISKVPGAALEMQQELKTFKE-VETIVK-PSFKEM--KNNDGKTPWELFTDEHKTLLEEAE 423
+S++ G L+ + K E +ET+ K P+ +E + N+ + P D K L+E +
Sbjct: 90 LSEI-GGRLDYPRLTKDIAEGIETLWKDPAIQETXARGNELQVP-----DXTKYLMENLK 143
Query: 424 K-----WMKSRAESCSIVATLATAGVFQAAFTPPGGN-KDGE-------GTPNFHSKIWF 470
+ ++ ++ + + A + T GV + F+P G N K GE G + W
Sbjct: 144 RLSDINYIPTKEDV--LYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWI 201
Query: 471 HIFVMSEAIAFSCSCIS 487
H+F A+ F C+ IS
Sbjct: 202 HLFEGVTAVIF-CAAIS 217
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 279 SKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMG 338
S K L +AA +G + +L + D+ + D+NG + H+A + H + KL+ E G
Sbjct: 22 SDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAG 80
Query: 339 FD 340
D
Sbjct: 81 AD 82
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 279 SKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMG 338
S K L +AA +G + +L + D+ + D+NG + H+A + H + KL+ E G
Sbjct: 4 SDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAG 62
Query: 339 FD 340
D
Sbjct: 63 AD 64
>pdb|2R19|A Chain A, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (Yhbn), Orthorhombic Form
pdb|2R19|B Chain B, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (Yhbn), Orthorhombic Form
pdb|2R1A|A Chain A, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|B Chain B, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|C Chain C, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|D Chain D, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|E Chain E, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|F Chain F, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|G Chain G, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
pdb|2R1A|H Chain H, Crystal Structure Of The Periplasmic Lipopolysaccharide
Transport Protein Lpta (yhbn), Trigonal Form
Length = 159
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 25/108 (23%)
Query: 305 PDLVHQLDENGRSI-FHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYS 363
P +Q+ +NG+ + H + MH YE+ D +V ++GN L
Sbjct: 66 PATFYQMQDNGKPVEGHASQMH---------YELAKD------FVVLTGNAYLQQVDSNI 110
Query: 364 NPKPISKVPGAALEMQQELKTF----KEVETIVKPSFKEMKNNDGKTP 407
I+ L +Q+++ F K V T++ PS + KNN G+TP
Sbjct: 111 KGDKIT-----YLVKEQKMQAFSDKGKRVTTVLVPSQLQDKNNKGQTP 153
>pdb|1BEV|3 Chain 3, Bovine Enterovirus Vg-5-27
Length = 242
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 417 TLLEEAEKWMKSRAESCSIVATLATAGVFQAAFTPPGGN 455
TL + +W S +C T T G A+TPPGG+
Sbjct: 101 TLAKHYTQWSGSVEITCMFTGTFMTTGKVLLAYTPPGGD 139
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 279 SKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMG 338
S K L +AA +G + +L + D V+ LDE+G + H+A H + +++ + G
Sbjct: 12 SDLGKKLLEAARAGQDDEVRILMANGAD-VNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 339 FDKELIATYVDVSGNNLLHLAA 360
D D G LHLAA
Sbjct: 71 AD----VNAEDNFGITPLHLAA 88
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 82 LHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ--RNPN 139
LH+A A + VK ++ H N + ++NG T +AA+ EIA +L+ NP+
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAV---NQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 140 LLTIRGGGQMTPLYIAALFGQSKMASFL 167
+ T ++ AA G KM L
Sbjct: 134 ---AKDHYDATAMHRAAAKGNLKMVHIL 158
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 94 VKQMVE-LTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPL 152
++ MVE L D ++ D +G TA +AAAV + E +L + N + TPL
Sbjct: 130 IEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPL 188
Query: 153 YIAALFG-----QSKMASFLYRQNEDNLE 176
++AA G ++ + +F R+ D+++
Sbjct: 189 FLAAREGSYEASKALLDNFANREITDHMD 217
>pdb|1SW6|A Chain A, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
pdb|1SW6|B Chain B, S. Cerevisiae Swi6 Ankyrin-Repeat Fragment
Length = 327
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 105 NLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ 135
N+L+ QD NG+T AA +G++ I +L
Sbjct: 274 NMLNAQDSNGDTCLNIAARLGNISIVDALLD 304
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
Query: 82 LHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQ--RNPN 139
LH+A A VK ++ H N + ++NG T +AA+ EIA +L+ NP+
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAV---NQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 140 LLTIRGGGQMTPLYIAALFGQSKMASFL 167
+ T ++ AA G KM L
Sbjct: 134 ---AKDHYDATAMHRAAAKGNLKMVHIL 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,969,836
Number of Sequences: 62578
Number of extensions: 618139
Number of successful extensions: 1496
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 1398
Number of HSP's gapped (non-prelim): 123
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)