Query 007858
Match_columns 587
No_of_seqs 424 out of 3382
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 12:15:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007858.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007858hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 3.1E-49 1.1E-53 416.2 30.6 354 14-414 16-387 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.8E-49 1.3E-53 415.5 28.9 330 38-414 10-354 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1E-44 3.4E-49 368.2 24.4 300 36-400 19-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 2.8E-44 9.6E-49 366.5 23.2 307 38-421 20-330 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 2.9E-42 1E-46 340.7 27.7 266 40-342 3-280 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.4E-41 4.8E-46 335.8 23.4 264 76-402 3-284 (285)
7 3d9h_A CDNA FLJ77766, highly s 100.0 2E-40 6.8E-45 328.1 24.0 260 37-342 10-281 (285)
8 2fo1_E LIN-12 protein; beta-ba 100.0 8E-42 2.7E-46 351.5 13.0 280 45-371 69-365 (373)
9 2xai_A ASB-9, ankyrin repeat a 100.0 4.5E-40 1.5E-44 321.4 21.4 246 77-366 2-252 (261)
10 4g8k_A 2-5A-dependent ribonucl 100.0 1.2E-39 4.1E-44 330.8 23.9 272 75-414 22-311 (337)
11 2fo1_E LIN-12 protein; beta-ba 100.0 2.9E-40 9.8E-45 339.9 18.2 261 36-341 88-372 (373)
12 3d9h_A CDNA FLJ77766, highly s 100.0 1.2E-39 4E-44 322.6 18.8 244 75-362 12-265 (285)
13 1oy3_D Transcription factor in 100.0 2.6E-39 8.8E-44 319.4 19.5 251 75-364 6-270 (282)
14 3ljn_A Hypothetical protein; a 100.0 2.6E-40 8.8E-45 339.4 11.7 255 75-366 17-303 (364)
15 3utm_A Tankyrase-1; tankyrase, 100.0 5.5E-38 1.9E-42 319.9 27.9 270 37-361 53-322 (351)
16 1yyh_A HN1;, notch 1, ankyrin 100.0 1.2E-38 4.1E-43 309.7 20.0 225 75-338 7-246 (253)
17 3ljn_A Hypothetical protein; a 100.0 4.2E-39 1.4E-43 330.4 16.2 261 37-341 15-315 (364)
18 2xai_A ASB-9, ankyrin repeat a 100.0 2.2E-38 7.4E-43 309.4 19.9 250 41-336 2-259 (261)
19 1yyh_A HN1;, notch 1, ankyrin 100.0 5.4E-39 1.9E-43 312.2 14.9 226 107-371 3-242 (253)
20 1k1a_A B-cell lymphoma 3-encod 100.0 1.6E-37 5.6E-42 299.1 19.7 223 75-337 6-238 (241)
21 1oy3_D Transcription factor in 100.0 3.7E-38 1.3E-42 311.1 14.7 253 106-416 1-270 (282)
22 3b7b_A Euchromatic histone-lys 100.0 5.2E-37 1.8E-41 294.9 22.2 220 70-365 4-223 (237)
23 3b7b_A Euchromatic histone-lys 100.0 6.1E-37 2.1E-41 294.5 21.9 225 37-336 6-231 (237)
24 1k1a_A B-cell lymphoma 3-encod 100.0 1.5E-37 5.2E-42 299.3 17.4 226 106-371 1-235 (241)
25 3aji_A 26S proteasome non-ATPa 100.0 5E-37 1.7E-41 293.8 20.8 226 40-340 4-230 (231)
26 3aji_A 26S proteasome non-ATPa 100.0 1.7E-36 5.8E-41 290.1 22.2 205 14-227 8-217 (231)
27 1s70_B 130 kDa myosin-binding 100.0 2E-37 6.9E-42 308.8 15.9 262 48-361 4-274 (299)
28 4b93_B Ankyrin repeat domain-c 100.0 1.9E-37 6.3E-42 303.4 13.3 229 36-339 5-243 (269)
29 3eu9_A Huntingtin-interacting 100.0 1.1E-35 3.7E-40 285.8 22.6 231 75-342 6-237 (240)
30 2dzn_A Probable 26S proteasome 100.0 1.6E-35 5.3E-40 282.8 22.0 92 78-171 2-95 (228)
31 3kea_A K1L; tropism, ANK repea 100.0 9.7E-36 3.3E-40 294.3 19.4 238 50-342 7-248 (285)
32 2dzn_A Probable 26S proteasome 100.0 2.4E-35 8.3E-40 281.4 19.0 211 114-362 2-218 (228)
33 4b93_B Ankyrin repeat domain-c 100.0 2.3E-36 7.9E-41 295.7 10.6 217 75-364 8-230 (269)
34 1s70_B 130 kDa myosin-binding 100.0 3.1E-35 1.1E-39 293.0 17.8 251 36-337 34-286 (299)
35 2f8y_A Notch homolog 1, transl 100.0 4.9E-35 1.7E-39 278.3 18.4 216 53-341 2-217 (223)
36 1sw6_A Regulatory protein SWI6 100.0 1.4E-36 4.8E-41 306.5 8.0 258 52-363 29-327 (327)
37 3eu9_A Huntingtin-interacting 100.0 5.7E-34 1.9E-38 273.8 22.9 229 37-306 4-235 (240)
38 3kea_A K1L; tropism, ANK repea 100.0 1E-34 3.5E-39 287.0 17.1 226 90-371 12-240 (285)
39 2f8y_A Notch homolog 1, transl 100.0 3.9E-34 1.3E-38 272.1 18.7 194 26-227 5-203 (223)
40 1ikn_D Protein (I-kappa-B-alph 100.0 6.9E-35 2.4E-39 280.0 9.9 224 74-363 4-230 (236)
41 2rfa_A Transient receptor pote 100.0 1.4E-32 4.9E-37 263.0 20.6 208 77-342 2-224 (232)
42 2rfa_A Transient receptor pote 100.0 5E-32 1.7E-36 259.2 21.8 196 41-272 2-226 (232)
43 3hra_A Ankyrin repeat family p 100.0 6.6E-32 2.2E-36 252.3 21.4 196 77-338 4-201 (201)
44 1sw6_A Regulatory protein SWI6 100.0 5.3E-33 1.8E-37 280.3 12.1 248 26-326 33-327 (327)
45 3hra_A Ankyrin repeat family p 100.0 2.8E-31 9.4E-36 248.1 20.4 193 39-266 2-201 (201)
46 1ikn_D Protein (I-kappa-B-alph 100.0 1.8E-32 6.1E-37 263.2 11.0 184 37-227 3-196 (236)
47 2etb_A Transient receptor pote 100.0 4.9E-31 1.7E-35 256.4 16.6 196 41-272 1-250 (256)
48 2etb_A Transient receptor pote 100.0 5.6E-31 1.9E-35 256.0 14.6 201 77-342 1-248 (256)
49 2pnn_A Transient receptor pote 100.0 9.8E-31 3.3E-35 256.9 16.3 202 36-271 7-262 (273)
50 4gpm_A Engineered protein OR26 100.0 3.8E-30 1.3E-34 232.5 18.5 157 44-209 6-163 (169)
51 2pnn_A Transient receptor pote 100.0 8E-31 2.7E-35 257.5 12.6 222 75-356 10-271 (273)
52 4gpm_A Engineered protein OR26 100.0 9.3E-30 3.2E-34 230.0 18.2 158 80-271 6-164 (169)
53 3jxi_A Vanilloid receptor-rela 100.0 4.1E-30 1.4E-34 250.4 15.0 200 39-271 2-253 (260)
54 3jxi_A Vanilloid receptor-rela 100.0 2.7E-30 9.1E-35 251.8 11.0 210 75-342 2-252 (260)
55 2aja_A Ankyrin repeat family p 100.0 1.7E-31 5.7E-36 272.2 2.1 264 43-370 66-367 (376)
56 3v30_A DNA-binding protein rfx 100.0 1.7E-28 5.8E-33 223.1 18.8 169 42-218 2-171 (172)
57 2rfm_A Putative ankyrin repeat 100.0 1.6E-27 5.5E-32 220.9 18.9 147 75-227 32-179 (192)
58 3v31_A Ankyrin repeat family A 100.0 1.3E-27 4.3E-32 216.3 17.5 155 41-202 2-157 (167)
59 2rfm_A Putative ankyrin repeat 100.0 1E-27 3.5E-32 222.1 16.9 159 37-202 30-189 (192)
60 4hbd_A KN motif and ankyrin re 100.0 2.8E-28 9.7E-33 239.5 13.6 191 41-266 75-273 (276)
61 2aja_A Ankyrin repeat family p 100.0 4.8E-30 1.6E-34 261.4 -0.7 280 51-415 43-360 (376)
62 2vge_A RELA-associated inhibit 99.9 7.3E-30 2.5E-34 243.4 0.2 189 75-371 18-207 (229)
63 3v30_A DNA-binding protein rfx 99.9 2.8E-27 9.7E-32 215.0 17.1 164 78-274 2-166 (172)
64 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.9E-27 1E-31 212.6 16.8 154 41-202 4-159 (162)
65 2y1l_E Darpin-8.4; hydrolase-i 99.9 3.8E-27 1.3E-31 213.5 17.3 158 38-202 10-168 (169)
66 3v31_A Ankyrin repeat family A 99.9 5.1E-27 1.7E-31 212.3 18.0 160 77-270 2-162 (167)
67 4hbd_A KN motif and ankyrin re 99.9 6.4E-28 2.2E-32 237.0 12.8 193 77-338 75-273 (276)
68 3f6q_A Integrin-linked protein 99.9 3.7E-27 1.3E-31 215.8 15.4 168 40-215 3-171 (179)
69 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.8E-27 2.3E-31 208.8 16.7 153 42-202 2-155 (156)
70 1ihb_A P18-INK4C(INK6), cyclin 99.9 6.4E-27 2.2E-31 210.3 15.5 159 76-268 3-162 (162)
71 3twr_A Tankyrase-2; ankyrin re 99.9 2.7E-27 9.1E-32 213.6 13.0 158 38-202 4-162 (165)
72 2vge_A RELA-associated inhibit 99.9 2.5E-29 8.6E-34 239.6 -0.9 129 37-172 16-147 (229)
73 1awc_B Protein (GA binding pro 99.9 1.1E-26 3.7E-31 206.8 16.2 150 42-199 2-152 (153)
74 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.4E-26 4.8E-31 209.8 17.2 158 75-266 11-169 (169)
75 3twr_A Tankyrase-2; ankyrin re 99.9 2.3E-26 7.8E-31 207.5 14.1 159 75-267 5-164 (165)
76 1awc_B Protein (GA binding pro 99.9 9.8E-26 3.4E-30 200.6 17.4 143 78-227 2-145 (153)
77 3f6q_A Integrin-linked protein 99.9 3.7E-26 1.3E-30 209.2 14.7 166 75-273 2-168 (179)
78 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.2E-26 4.2E-31 222.9 9.8 179 39-227 2-193 (239)
79 1bd8_A P19INK4D CDK4/6 inhibit 99.9 3.1E-25 1E-29 198.0 15.7 143 78-227 2-145 (156)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.9E-25 6.5E-30 214.5 9.9 146 75-227 2-151 (239)
81 3t8k_A Uncharacterized protein 99.9 4.1E-25 1.4E-29 202.9 8.4 154 41-202 5-176 (186)
82 1d9s_A Cyclin-dependent kinase 99.9 1.9E-24 6.4E-29 188.2 11.7 127 38-172 8-135 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 1.5E-24 5.2E-29 193.6 11.3 140 38-185 8-149 (156)
84 2jab_A H10-2-G3; HER2, darpin, 99.9 6E-24 2.1E-28 185.0 13.0 127 38-171 10-136 (136)
85 1d9s_A Cyclin-dependent kinase 99.9 8.2E-24 2.8E-28 184.1 12.4 129 68-202 3-133 (136)
86 1bi7_B P16INK4A, MTS1, multipl 99.9 4.9E-24 1.7E-28 190.3 10.4 141 75-222 9-151 (156)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.9 3.4E-23 1.2E-27 177.2 14.0 125 41-172 1-125 (126)
88 3t8k_A Uncharacterized protein 99.9 5.6E-24 1.9E-28 195.3 8.9 159 78-271 6-182 (186)
89 3ui2_A Signal recognition part 99.9 5.1E-23 1.7E-27 198.1 12.5 165 14-202 17-182 (244)
90 2jab_A H10-2-G3; HER2, darpin, 99.9 1.3E-22 4.6E-27 176.4 13.7 124 75-202 11-135 (136)
91 3deo_A Signal recognition part 99.9 6.1E-23 2.1E-27 188.4 11.2 144 35-202 37-181 (183)
92 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.5E-22 1.5E-26 170.2 15.6 122 77-202 1-123 (126)
93 3ui2_A Signal recognition part 99.9 1.2E-23 4.2E-28 202.4 4.3 172 40-269 13-186 (244)
94 3c5r_A BARD-1, BRCA1-associate 99.9 4.8E-23 1.7E-27 179.4 6.6 127 38-171 6-132 (137)
95 3aaa_C Myotrophin, protein V-1 99.9 2.8E-22 9.6E-27 171.1 9.2 112 39-157 4-115 (123)
96 3c5r_A BARD-1, BRCA1-associate 99.9 1.7E-22 5.9E-27 175.9 8.0 125 74-202 6-131 (137)
97 3aaa_C Myotrophin, protein V-1 99.9 9.4E-22 3.2E-26 167.8 10.7 117 75-195 4-121 (123)
98 2b0o_E UPLC1; arfgap, structur 99.9 7.1E-22 2.4E-26 195.8 11.5 138 78-227 151-298 (301)
99 3deo_A Signal recognition part 99.9 6.1E-22 2.1E-26 181.7 10.1 129 75-227 41-171 (183)
100 3ehr_A Osteoclast-stimulating 99.9 4.6E-22 1.6E-26 188.6 7.8 124 75-202 70-195 (222)
101 3ehr_A Osteoclast-stimulating 99.8 1.5E-21 5.3E-26 184.9 9.9 127 39-172 70-197 (222)
102 2b0o_E UPLC1; arfgap, structur 99.8 9.2E-21 3.1E-25 187.8 14.5 142 41-193 150-299 (301)
103 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.6E-20 1.2E-24 149.4 11.5 92 77-172 1-92 (93)
104 1dcq_A PYK2-associated protein 99.8 7.6E-20 2.6E-24 179.1 14.2 124 43-172 131-262 (278)
105 3jue_A Arfgap with coiled-coil 99.8 4.4E-20 1.5E-24 187.1 12.4 125 41-172 198-325 (368)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.8E-19 6.1E-24 145.3 10.7 93 41-139 1-93 (93)
107 3lvq_E ARF-GAP with SH3 domain 99.8 2.1E-19 7.1E-24 191.3 13.8 134 43-188 133-275 (497)
108 3jue_A Arfgap with coiled-coil 99.8 4.2E-19 1.4E-23 180.0 14.5 148 75-226 196-348 (368)
109 1dcq_A PYK2-associated protein 99.8 1E-18 3.5E-23 171.1 16.6 161 38-202 62-260 (278)
110 2l6b_A NR1C; ankyrin, consensu 99.8 2.6E-19 8.9E-24 150.5 7.1 106 39-151 6-111 (115)
111 2l6b_A NR1C; ankyrin, consensu 99.8 4.1E-19 1.4E-23 149.3 8.2 106 74-183 5-111 (115)
112 3lvq_E ARF-GAP with SH3 domain 99.8 2.4E-18 8.3E-23 183.0 14.1 135 78-224 132-276 (497)
113 2zgd_A 3 repeat synthetic anky 99.7 1.9E-17 6.5E-22 137.8 10.2 90 74-167 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.1E-16 7.2E-21 131.5 9.3 92 36-133 18-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 65.2 42 0.0014 32.6 11.0 188 38-226 33-228 (351)
116 3gvo_A Pumilio 2, pumilio homo 59.2 56 0.0019 31.7 10.7 263 73-366 32-310 (351)
117 3k49_A MRNA-binding protein PU 43.3 1.2E+02 0.0041 29.6 10.2 188 38-226 38-233 (369)
118 2iub_A CORA, divalent cation t 34.5 32 0.0011 33.7 4.3 21 519-539 306-326 (363)
119 4ev6_A Magnesium transport pro 34.0 45 0.0015 32.3 5.3 21 519-539 282-302 (339)
120 3k49_A MRNA-binding protein PU 28.8 2.1E+02 0.0072 27.7 9.3 151 38-191 74-233 (369)
121 4g26_A Pentatricopeptide repea 27.5 98 0.0033 31.7 6.8 44 253-303 157-200 (501)
122 2l8s_A Integrin alpha-1; trans 26.4 83 0.0029 21.1 3.8 17 540-556 4-20 (54)
123 2knc_A Integrin alpha-IIB; tra 22.3 1.1E+02 0.0037 20.5 3.7 15 542-556 9-23 (54)
124 2k1a_A Integrin alpha-IIB; sin 21.8 1.6E+02 0.0054 18.6 4.9 13 574-586 29-41 (42)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-49 Score=416.20 Aligned_cols=354 Identities=21% Similarity=0.230 Sum_probs=240.8
Q ss_pred cccceeecCCCCCCCCCCcCCCC---cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCC
Q 007858 14 QEISISITGRDPANSVQPLQNDK---KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQ 90 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~ 90 (587)
..+..++...+.+....+++.+. ..+..|.||||.|+..|+.+++++|+ +.+.+++.. +.+|.||||+|+..|+
T Consensus 16 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~g~ 92 (437)
T 1n11_A 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAKVNAK-AKDDQTPLHCAARIGH 92 (437)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHH--HHTCCSSCC-CTTSCCHHHHHHHHTC
T ss_pred CHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH--hCCCCCCCC-CCCCCCHHHHHHHCCC
Confidence 44555555444444444444432 34567889999999999999999998 567778776 8889999999999999
Q ss_pred HHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhc
Q 007858 91 TNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQ 170 (587)
Q Consensus 91 ~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 170 (587)
.++|++|+++| ++ ++..|..|.||||+|++.|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|+++
T Consensus 93 ~~~v~~Ll~~g--a~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 168 (437)
T 1n11_A 93 TNMVKLLLENN--AN-PNLATTAGHTPLHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLER 168 (437)
T ss_dssp HHHHHHHHHHT--CC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHHhCC--CC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence 99999999988 77 8888888999999999999999999998888885 77788888888888888888888888888
Q ss_pred CC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccC
Q 007858 171 NE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNT 249 (587)
Q Consensus 171 ~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (587)
++ .+..+.+|.||||.|+..++.+++++|+++ +..++..+.+|.||||+|+..++
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~---------------------- 224 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTPLHIAAKQNQ---------------------- 224 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG--TCCSCCCCTTCCCHHHHHHHTTC----------------------
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCC----------------------
Confidence 87 777888888888888888888888888887 66777778888888888888876
Q ss_pred CCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChh
Q 007858 250 DSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHAD 329 (587)
Q Consensus 250 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~ 329 (587)
.++++.|++.+.+++..+. .|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+
T Consensus 225 ------~~~~~~Ll~~g~~~~~~~~-----~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~ 292 (437)
T 1n11_A 225 ------VEVARSLLQYGGSANAESV-----QGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVP 292 (437)
T ss_dssp ------HHHHHHHHHTTCCTTCCCT-----TCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHH
T ss_pred ------HHHHHHHHHcCCCCCCCCC-----CCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHH
Confidence 5555555555554443322 445555555555555555555555555 3445555555555555555555
Q ss_pred HHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCC--C-----------CchHHHHHHhhhHHHHHHh-cccc
Q 007858 330 TFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKV--P-----------GAALEMQQELKTFKEVETI-VKPS 395 (587)
Q Consensus 330 iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l--~-----------~~~~~~~~~l~~~~~v~~l-~~~~ 395 (587)
++++|+++|++++ .+|..|+||||+|+..|+.+++++| . ..+++........+.|+.| .+|+
T Consensus 293 ~~~~Ll~~g~~~~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga 368 (437)
T 1n11_A 293 VADVLIKHGVMVD----ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368 (437)
T ss_dssp HHHHHHHHTCCTT----CCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred HHHHHHhCCccCC----CCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcC
Confidence 5555555554433 3455555555555555554444333 0 0111222222222233333 3677
Q ss_pred cccccCCCCCCchhhhHHh
Q 007858 396 FKEMKNNDGKTPWELFTDE 414 (587)
Q Consensus 396 ~~~~~n~~g~t~l~~a~~~ 414 (587)
+++.+|.+|+||+++|.+.
T Consensus 369 ~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 369 SPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp CSCCCCSSSCCHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHc
Confidence 8888888888888887654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.8e-49 Score=415.53 Aligned_cols=330 Identities=19% Similarity=0.193 Sum_probs=297.1
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
.+..|+||||.|+..|+.++|++|+ +.+.+++.. +..|.||||+|+..|+.++|++|++++ ++ ++.+|..|.||
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll--~~g~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~ 83 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLL--QRGASPNVS-NVKVETPLHMAARAGHTEVAKYLLQNK--AK-VNAKAKDDQTP 83 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHH--HTTCCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHHT--CC-SSCCCTTSCCH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHH--HcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhCC--CC-CCCCCCCCCCH
Confidence 5678999999999999999999999 668888877 889999999999999999999999999 88 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHH
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLA 196 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v 196 (587)
||+|++.|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.++ .+..+..|.||||.|+..|+.+++
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 162 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVA 162 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999999995 8999999999999999999999999999998 777889999999999999999999
Q ss_pred HHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhh
Q 007858 197 LQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLK 276 (587)
Q Consensus 197 ~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~ 276 (587)
++|+++ +..++..+..|.||||+|+..++ .+++++|++++.+++..+
T Consensus 163 ~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~~~~~~~--- 209 (437)
T 1n11_A 163 ELLLER--DAHPNAAGKNGLTPLHVAVHHNN----------------------------LDIVKLLLPRGGSPHSPA--- 209 (437)
T ss_dssp HHHHHT--TCCTTCCCSSCCCHHHHHHHTTC----------------------------HHHHHHHGGGTCCSCCCC---
T ss_pred HHHHhC--CCCCCCCCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhCCCCCCCcC---
Confidence 999998 88889999999999999999998 999999999998877654
Q ss_pred hccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHH
Q 007858 277 LISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLL 356 (587)
Q Consensus 277 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpL 356 (587)
..|.||||.|+..|+.+++++|++.+++ ++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||
T Consensus 210 --~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----~~~~~g~t~L 282 (437)
T 1n11_A 210 --WNGYTPLHIAAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGN----LGNKSGLTPL 282 (437)
T ss_dssp --TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----CCCTTCCCHH
T ss_pred --CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCC----CCCCCCCCHH
Confidence 3789999999999999999999999999 79999999999999999999999999999999876 6999999999
Q ss_pred HHHHHcCCCCCCCCC-------------CCchHHHHHHhhhHHHHHHhc-ccccccccCCCCCCchhhhHHh
Q 007858 357 HLAAQYSNPKPISKV-------------PGAALEMQQELKTFKEVETIV-KPSFKEMKNNDGKTPWELFTDE 414 (587)
Q Consensus 357 hlA~~~~~~~~~~~l-------------~~~~~~~~~~l~~~~~v~~l~-~~~~~~~~n~~g~t~l~~a~~~ 414 (587)
|+|+..|+.++++.| ...++.........+.|+.++ ++++++.+|..|+||||+|.+.
T Consensus 283 ~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 283 HLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHC
Confidence 999999998776654 123455555555566677666 6899999999999999999764
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1e-44 Score=368.22 Aligned_cols=300 Identities=17% Similarity=0.209 Sum_probs=263.8
Q ss_pred CcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCC
Q 007858 36 KKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGN 115 (587)
Q Consensus 36 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~ 115 (587)
.+.+.+|.|+||.|++.|+.++|+.|| +++++++.+.+..|.||||+|+..|+.++|++|+++| ++ ++.++..+.
T Consensus 19 ~~~~~~~~t~L~~Av~~g~~~~V~~LL--~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~g--a~-~~~~~~~~~ 93 (337)
T 4g8k_A 19 RRAAVEDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--AD-PVLRKKNGA 93 (337)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHH--HHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCC
T ss_pred CCCCCCCChHHHHHHHcCCHHHHHHHH--HCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcC--Cc-hhhhccCCC
Confidence 345667899999999999999999999 6789999874456999999999999999999999999 88 999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCC----------CCCCCchHH
Q 007858 116 TAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNL----------EPDDLENTF 184 (587)
Q Consensus 116 TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~----------~~~~g~t~l 184 (587)
+|++.++..++.+++..+++.++++ +.+|..|.||||+|+..|+.+++++|+++++ .+. .+..|.|||
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L 172 (337)
T 4g8k_A 94 TPFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 172 (337)
T ss_dssp CHHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHH
T ss_pred chhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHH
Confidence 9999999999999999999999996 8999999999999999999999999999987 443 456789999
Q ss_pred HHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHH
Q 007858 185 FVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWK 264 (587)
Q Consensus 185 ~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~ 264 (587)
|.|+..|+.++++.|+++ .+.+++.+|..|.|++|.++..+.. ....+++++|++
T Consensus 173 ~~A~~~g~~~~v~~LL~~-~gad~n~~d~~g~t~l~~~~~~~~~------------------------~~~~~i~~lLl~ 227 (337)
T 4g8k_A 173 MDAAEKGHVEVLKILLDE-MGADVNACDNMGRNALIHALLSSDD------------------------SDVEAITHLLLD 227 (337)
T ss_dssp HHHHHHTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHHSCT------------------------TTHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhc-cCCCcCccCCCCCcHHHHHHHHcCc------------------------ccHHHHHHHHHH
Confidence 999999999999999987 7899999999999999988765430 111578899999
Q ss_pred HhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHh-CCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhh
Q 007858 265 EISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRS-YPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKEL 343 (587)
Q Consensus 265 ~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~ 343 (587)
+|++++..+. .|.||||.|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+.+|+.+++++|+++|++++
T Consensus 228 ~gad~n~~d~-----~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n- 300 (337)
T 4g8k_A 228 HGADVNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD- 300 (337)
T ss_dssp TTCCTTCCCG-----GGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST-
T ss_pred CCCCCCCcCC-----CCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-
Confidence 9999887654 789999999999999999999986 566 79999999999999999999999999999999865
Q ss_pred hhhhccCCCCcHHHHHHHcCCCCCCCCCCCchHHHHHHhhhHHHHHHhccccccccc
Q 007858 344 IATYVDVSGNNLLHLAAQYSNPKPISKVPGAALEMQQELKTFKEVETIVKPSFKEMK 400 (587)
Q Consensus 344 ~~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~ 400 (587)
+.||||+|+..++.++++.| +.+|+++|..
T Consensus 301 --------~~~~L~~A~~~~~~~iv~~L-------------------l~~GA~~d~~ 330 (337)
T 4g8k_A 301 --------CGDLVMTARRNYDHSLVKVL-------------------LSHGAKEDFH 330 (337)
T ss_dssp --------TCCHHHHHHHTTCHHHHHHH-------------------HHTTCCC---
T ss_pred --------CCCHHHHHHHcCCHHHHHHH-------------------HHCcCCCCCC
Confidence 45799999999997776665 5588888764
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.8e-44 Score=366.46 Aligned_cols=307 Identities=19% Similarity=0.155 Sum_probs=257.7
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
.+..+.++||.|+..|+.+.++.++ .+.+.+++.. |..|.||||+|+..|+.++|++|++.| ++ ++.+|..|.||
T Consensus 20 ~~~~~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~ 94 (351)
T 3utm_A 20 TGEYKKDELLEAARSGNEEKLMALL-TPLNVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQHG--AD-VHAKDKGGLVP 94 (351)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHC-CTTTTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCCH
T ss_pred eccccchhHHHHHHcCCHHHHHHHH-HhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCccCCCCCcH
Confidence 3567789999999999999999999 7778888877 899999999999999999999999999 88 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHH
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLA 196 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v 196 (587)
||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++ ++..+..|.++++.++..+..+.+
T Consensus 95 L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~ 173 (351)
T 3utm_A 95 LHNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERL 173 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHH
Confidence 99999999999999999999996 8899999999999999999999999999999 888999999999999888777776
Q ss_pred HHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhh
Q 007858 197 LQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLK 276 (587)
Q Consensus 197 ~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~ 276 (587)
...... +++..++..++ .+.++.++........
T Consensus 174 ~~~~~~--------------~~~~~~~~~~~----------------------------~~~~~~~l~~~~~~~~----- 206 (351)
T 3utm_A 174 TYEFKG--------------HSLLQAAREAD----------------------------LAKVKKTLALEIINFK----- 206 (351)
T ss_dssp HHHHHH--------------HHHHHHHHTTC----------------------------HHHHHHHTTTCCTTCC-----
T ss_pred Hhhhcc--------------cHHHHHHHhcc----------------------------HHHHHHHHHhhccccc-----
Confidence 665543 34555565554 5666555544332211
Q ss_pred hccCCChHHHHHHHc---CcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCC
Q 007858 277 LISKPSKLLFDAAHS---GNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGN 353 (587)
Q Consensus 277 ~~~~g~t~Lh~Aa~~---g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~ 353 (587)
.+..|.||||.|+.. +..+++++|++++++ ++.+|.+|+||||+|+.+|+.+++++|+++|++++ .+|..|+
T Consensus 207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n----~~d~~g~ 281 (351)
T 3utm_A 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN----ALDSLGQ 281 (351)
T ss_dssp CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSC
T ss_pred CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CcCCCCC
Confidence 224678899999988 668888999998888 68888889999999999999999999999888865 6888899
Q ss_pred cHHHHHHHcCCCCCCCCCCCchHHHHHHhhhHHHHHHhcccccccccCCCCCCchhhhHHhhhHHHHH
Q 007858 354 NLLHLAAQYSNPKPISKVPGAALEMQQELKTFKEVETIVKPSFKEMKNNDGKTPWELFTDEHKTLLEE 421 (587)
Q Consensus 354 TpLhlA~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~g~t~l~~a~~~~~~l~~~ 421 (587)
||||+|+..|+.++++.| +..|++++.+|.+|+||+++|.+...+++.+
T Consensus 282 t~L~~A~~~~~~~~v~~L-------------------l~~gad~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 282 TALHRAALAGHLQTCRLL-------------------LSYGSDPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp CHHHHHHHHTCHHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred CHHHHHHHcCcHHHHHHH-------------------HHcCCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 999999998887666555 5578888889999999999886665555443
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-42 Score=340.67 Aligned_cols=266 Identities=18% Similarity=0.221 Sum_probs=244.6
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHH
Q 007858 40 SHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFC 119 (587)
Q Consensus 40 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh 119 (587)
.+|.|+||.|+..|+.++++.|+ +.+.+++...+..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll--~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHG--AD-PVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHH--HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCCHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHH--HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CC-CcccCCCCCCHHH
Confidence 35789999999999999999999 6677887765788999999999999999999999998 88 8999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCC----------CCCCchHHHHHH
Q 007858 120 FAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLE----------PDDLENTFFVSI 188 (587)
Q Consensus 120 ~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~----------~~~g~t~l~~a~ 188 (587)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+.. +..|.||||.|+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 999999999999999999996 8999999999999999999999999999998 5554 788999999999
Q ss_pred HhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhc
Q 007858 189 ETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISK 268 (587)
Q Consensus 189 ~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~ 268 (587)
..|+.++++.|++. .+..++..|..|.||||+|+..++. ....+++++|++.|.+
T Consensus 157 ~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~l~~a~~~~~~------------------------~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 157 EKGHVEVLKILLDE-MGADVNACDNMGRNALIHALLSSDD------------------------SDVEAITHLLLDHGAD 211 (285)
T ss_dssp HHTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHHHHCSCT------------------------TTHHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHh-cCCCCCccCCCCCCHHHHHHHcccc------------------------chHHHHHHHHHHcCCC
Confidence 99999999999998 7899999999999999999998751 1226899999999998
Q ss_pred cchhhhhhhccCCChHHHHHHHcCcHHHHHHHHH-hCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 007858 269 STHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTR-SYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342 (587)
Q Consensus 269 ~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 342 (587)
++..+. .|.||||+|+..|+.+++++|++ .+.+ ++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 212 ~~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 212 VNVRGE-----RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp SSCCCT-----TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred CCCcCC-----CCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 886653 78999999999999999999999 6777 79999999999999999999999999999999976
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-41 Score=335.80 Aligned_cols=264 Identities=19% Similarity=0.187 Sum_probs=241.4
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccC-CCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 76 KGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQ-DENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 76 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
.+|.||||.|++.|+.++|++|++.+ .+ ++.+ +..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGG--AN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcC--CC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence 35789999999999999999999998 78 7776 888999999999999999999999999995 8899999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhccccccccc----------ccCCchHHHHHh
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGAT----------HAKYGTAMHMLA 223 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~----------d~~g~t~Lh~a~ 223 (587)
|+..|+.+++++|+++++ .+..+..|.||||.|+..++.+++++|+++ +..++.. +..|.||||.|+
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 999999999999999998 888899999999999999999999999998 6666555 788999999999
Q ss_pred hCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHH-hhccchhhhhhhccCCChHHHHHHHcCc----HHHHH
Q 007858 224 RNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKE-ISKSTHKDVLKLISKPSKLLFDAAHSGN----FKFLA 298 (587)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~----~~iv~ 298 (587)
..++ .+++++|+++ +.+++..+ ..|.||||.|+..++ .++++
T Consensus 157 ~~~~----------------------------~~~v~~Ll~~~~~~~~~~~-----~~g~t~l~~a~~~~~~~~~~~i~~ 203 (285)
T 1wdy_A 157 EKGH----------------------------VEVLKILLDEMGADVNACD-----NMGRNALIHALLSSDDSDVEAITH 203 (285)
T ss_dssp HHTC----------------------------HHHHHHHHHTSCCCTTCCC-----TTSCCHHHHHHHCSCTTTHHHHHH
T ss_pred HcCC----------------------------HHHHHHHHHhcCCCCCccC-----CCCCCHHHHHHHccccchHHHHHH
Confidence 9997 9999999998 88777654 478999999999999 99999
Q ss_pred HHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHh-cCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCCCCchHH
Q 007858 299 VLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYE-MGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKVPGAALE 377 (587)
Q Consensus 299 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~ 377 (587)
+|++++++ ++.+|..|+||||+|+..|+.+++++|++ .|++++ .+|.+|+||||+|+..++.++++.|
T Consensus 204 ~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~----~~~~~g~t~l~~A~~~~~~~i~~~L------ 272 (285)
T 1wdy_A 204 LLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL------ 272 (285)
T ss_dssp HHHHTTCC-SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT----CCCTTSCCHHHHHHHTTCHHHHHHH------
T ss_pred HHHHcCCC-CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc----ccCCCCCcHHHHHHHcCcHHHHHHH------
Confidence 99999999 79999999999999999999999999999 888866 7999999999999999997766655
Q ss_pred HHHHhhhHHHHHHhcccccccccCC
Q 007858 378 MQQELKTFKEVETIVKPSFKEMKNN 402 (587)
Q Consensus 378 ~~~~l~~~~~v~~l~~~~~~~~~n~ 402 (587)
+.+|++++.+|.
T Consensus 273 -------------l~~Ga~~~~~d~ 284 (285)
T 1wdy_A 273 -------------CKRGASTDCGDL 284 (285)
T ss_dssp -------------HHHSSCSCCSSC
T ss_pred -------------HHcCCCCCcccc
Confidence 557888888773
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2e-40 Score=328.10 Aligned_cols=260 Identities=12% Similarity=0.081 Sum_probs=206.4
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcC----------ccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDH----------QSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNL 106 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~----------~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~l 106 (587)
.-+..|.|+||+|+..|+.+.+..++ ... ...++.. |.+|.||||+|+..|+.++|++|++.+ .+
T Consensus 10 ~~~~~~~~~lH~Aa~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~- 84 (285)
T 3d9h_A 10 HSSGLVPRGSHMASMDGKQGGMDGSK-PAGPRDFPGIRLLSNPLMGD-AVSDWSPMHEAAIHGHQLSLRNLISQG--WA- 84 (285)
T ss_dssp ---------------------------------CCSEECCCCTTCSS-SCCSCCHHHHHHHTTCHHHHHHHHHTT--CC-
T ss_pred ccchHHHHHHHHHhhcCCCCCcccCC-CCccccccchhhhhCcccCC-CccCCCHHHHHHHcCCHHHHHHHHHCC--CC-
Confidence 34678999999999999988888865 222 1223444 889999999999999999999999998 88
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHH
Q 007858 107 LSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFF 185 (587)
Q Consensus 107 l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~ 185 (587)
++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+ .+.+|.||||
T Consensus 85 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~ 162 (285)
T 3d9h_A 85 VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIH 162 (285)
T ss_dssp SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS-CSCTTSCHHH
T ss_pred CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC-CCCCCCCHHH
Confidence 9999999999999999999999999999999996 8999999999999999999999999999998 43 3556999999
Q ss_pred HHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHH
Q 007858 186 VSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKE 265 (587)
Q Consensus 186 ~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ 265 (587)
.|+..|+.++++.|++. +..++.+|..|.||||+|+..++ .+++++|++.
T Consensus 163 ~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~ 212 (285)
T 3d9h_A 163 EAARRGHVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQ----------------------------RACVKKLLES 212 (285)
T ss_dssp HHHHHTCHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTC----------------------------HHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCc----------------------------HHHHHHHHHC
Confidence 99999999999999997 88888999999999999999997 8999999999
Q ss_pred hhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhc-Ccchh
Q 007858 266 ISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM-GFDKE 342 (587)
Q Consensus 266 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~ 342 (587)
|++++. +..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+ ++.+++++|+++ |+++.
T Consensus 213 ga~~~~------~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l~ 281 (285)
T 3d9h_A 213 GADVNQ------GKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASLP 281 (285)
T ss_dssp TCCTTC------CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC-----
T ss_pred CCCCCC------CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCCC
Confidence 988873 34789999999999999999999999999 7999999999999999 567999999998 66543
No 8
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=8e-42 Score=351.50 Aligned_cols=280 Identities=15% Similarity=0.175 Sum_probs=225.2
Q ss_pred HhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCC-CCCCcHHHHHHH
Q 007858 45 PLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQD-ENGNTAFCFAAA 123 (587)
Q Consensus 45 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d-~~g~TpLh~Aa~ 123 (587)
++.-+...|+.+.++.++ . +. .+..|.||||.|+..|+ +++++|+.. + ++.+| ..|.||||+|+.
T Consensus 69 ~~~~~~~~g~~~~~~~~~-~------~~-~~~~g~t~L~~Aa~~~~-~~~~~L~~~----~-~n~~d~~~g~t~Lh~Aa~ 134 (373)
T 2fo1_E 69 YGNGNDFLGDFNHTNLQI-P------TE-PEPESPIKLHTEAAGSY-AITEPITRE----S-VNIIDPRHNRTVLHWIAS 134 (373)
T ss_dssp ---------------------------------CCCHHHHHHHSSS-CCCSCCSTT----T-TTTCCCSSCCCHHHHHHC
T ss_pred cCCCCCcccccccccccc-c------cC-CCCCCccHHHHHhcCCc-hHHHHhccc----c-ccccCCcCCCCHHHHHHH
Confidence 345555666666666555 1 12 27889999999999665 788887643 4 77888 789999999999
Q ss_pred cCCHHHHHHHH--------hcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHH
Q 007858 124 VGSVEIAQFML--------QRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYG 194 (587)
Q Consensus 124 ~g~~~iv~~Ll--------~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~ 194 (587)
.|+.+++++|+ +.|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+..+.+|.||||.|+..|+.+
T Consensus 135 ~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~ 213 (373)
T 2fo1_E 135 NSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFG 213 (373)
T ss_dssp TTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHH
Confidence 99998888776 789996 8999999999999999999999999999998 8889999999999999999999
Q ss_pred HHHHHHHhccc---ccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccch
Q 007858 195 LALQLLKKNKK---LLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTH 271 (587)
Q Consensus 195 ~v~~Ll~~~~~---~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~ 271 (587)
++++|++. + ...+..|..|.||||+|+..+. ....+++++|++.|.+++.
T Consensus 214 ~v~~Ll~~--~~~~~~~~~~d~~g~t~L~~A~~~~~-------------------------~~~~~~v~~Ll~~g~~~~~ 266 (373)
T 2fo1_E 214 MMVYMLNS--TKLKGDIEELDRNGMTALMIVAHNEG-------------------------RDQVASAKLLVEKGAKVDY 266 (373)
T ss_dssp HHHHHTTS--HHHHHTTSCCCTTSCCHHHHHHHSCS-------------------------TTHHHHHHHHHHHTCCSSC
T ss_pred HHHHHHhc--CccccChhhcCCCCCCHHHHHHHhCC-------------------------cchHHHHHHHHHCCCCccc
Confidence 99999987 4 6788899999999999998872 0018999999999998875
Q ss_pred hhhh---hhccCCChHHHHHHHcCcHHHHHHHHHhC-CCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhh
Q 007858 272 KDVL---KLISKPSKLLFDAAHSGNFKFLAVLTRSY-PDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATY 347 (587)
Q Consensus 272 ~~~~---~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~ 347 (587)
.... ..+..|.||||+|+..|+.+++++|++++ .+ ++.+|.+|+||||+|+.+|+.+++++|+++|++++ .
T Consensus 267 ~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~----~ 341 (373)
T 2fo1_E 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----A 341 (373)
T ss_dssp CSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----C
T ss_pred ccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----C
Confidence 3321 23457899999999999999999999997 66 79999999999999999999999999999999976 6
Q ss_pred ccCCCCcHHHHHHHcCCCCCCCCC
Q 007858 348 VDVSGNNLLHLAAQYSNPKPISKV 371 (587)
Q Consensus 348 ~d~~G~TpLhlA~~~~~~~~~~~l 371 (587)
+|..|+||||+|+..|+.+++++|
T Consensus 342 ~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 342 VDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp CCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHH
Confidence 999999999999999997766555
No 9
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=4.5e-40 Score=321.36 Aligned_cols=246 Identities=13% Similarity=0.098 Sum_probs=180.2
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAA 156 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 156 (587)
+|.||||+|+..|+.++|++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQG--WA-VNIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCC--CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 3566666666666666666666665 55 6666666666666666666666666666666664 566666666666666
Q ss_pred HhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCC
Q 007858 157 LFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPG 235 (587)
Q Consensus 157 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 235 (587)
..|+.+++++|+++++ .+ .+.+|.||||.|+..|+.++++.|++. +..++.+|..|.||||+|+..++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~-------- 146 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQ-------- 146 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSS-CSCTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTC--------
T ss_pred HcCCHHHHHHHHHCCCCCC-CCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHhCC--------
Confidence 6666666666666665 22 334466666666666666666666665 66677788888899999988887
Q ss_pred CccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCC
Q 007858 236 WLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENG 315 (587)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g 315 (587)
.+++++|++.|++++. +..|.||||.|+..|+.+++++|+++|++ ++.+|.+|
T Consensus 147 --------------------~~~v~~Ll~~g~~~~~------~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad-~~~~d~~g 199 (261)
T 2xai_A 147 --------------------RACVKKLLESGADVNQ------GKGQDSPLHAVARTASEELACLLMDFGAD-TQAKNAEG 199 (261)
T ss_dssp --------------------HHHHHHHHHHTCCTTC------CBTTBCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTS
T ss_pred --------------------HHHHHHHHHcCCCCCC------CCCCCChHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 8889999998888773 24789999999999999999999999999 79999999
Q ss_pred CchHHHHHHcCChhHHHHHHhcCcchhh----hhhhccCCCCcHHHHHHHcCCCC
Q 007858 316 RSIFHIAVMHRHADTFKLIYEMGFDKEL----IATYVDVSGNNLLHLAAQYSNPK 366 (587)
Q Consensus 316 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~----~~~~~d~~G~TpLhlA~~~~~~~ 366 (587)
+||||+|+.++ +++++|++++.+... .++.+|..|+||+|+|.+...++
T Consensus 200 ~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~ 252 (261)
T 2xai_A 200 KRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE 252 (261)
T ss_dssp CCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCH
T ss_pred CChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcH
Confidence 99999999554 699999998765321 24578999999999999876654
No 10
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.2e-39 Score=330.83 Aligned_cols=272 Identities=19% Similarity=0.169 Sum_probs=239.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCC-CCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDE-NGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLY 153 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~-~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~ 153 (587)
+.+|+|+||.|++.|+.++|++|+++| ++ ++.++. .|.||||+|++.|+.++|++|+++|+++ +.++..+.+|++
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~G--ad-vn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~ 97 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGG--AN-VNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFI 97 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT--CC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCC--CC-CCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhH
Confidence 345789999999999999999999999 88 888875 4999999999999999999999999995 899999999999
Q ss_pred HHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhccccccc----------ccccCCchHHHHH
Q 007858 154 IAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAG----------ATHAKYGTAMHML 222 (587)
Q Consensus 154 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~----------~~d~~g~t~Lh~a 222 (587)
.++..++.+++..+++.+. .+..+..|.||+|.|+..|+.++++.|+++ ++.++ ..+..|.||||+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~--ga~~~~~~~~~~~~~~~~~~g~T~L~~A 175 (337)
T 4g8k_A 98 LAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLRKGGATALMDA 175 (337)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCC-----CTTCSCCHHHHH
T ss_pred HHHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc--CCCcchhhccccccccccCCCCcHHHHH
Confidence 9999999999999999998 888999999999999999999999999997 54443 3456799999999
Q ss_pred hhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHH-hhccchhhhhhhccCCChHHHHHHHcCc----HHHH
Q 007858 223 ARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKE-ISKSTHKDVLKLISKPSKLLFDAAHSGN----FKFL 297 (587)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~----~~iv 297 (587)
+..|+ .+++++|+++ |++++..+ ..|.|++|.++..+. .+++
T Consensus 176 ~~~g~----------------------------~~~v~~LL~~~gad~n~~d-----~~g~t~l~~~~~~~~~~~~~~i~ 222 (337)
T 4g8k_A 176 AEKGH----------------------------VEVLKILLDEMGADVNACD-----NMGRNALIHALLSSDDSDVEAIT 222 (337)
T ss_dssp HHHTC----------------------------HHHHHHHHHHSCCCTTCCC-----TTSCCHHHHHHHHSCTTTHHHHH
T ss_pred HHCCC----------------------------HHHHHHHHhccCCCcCccC-----CCCCcHHHHHHHHcCcccHHHHH
Confidence 99998 9999999975 78877655 378999998876543 5688
Q ss_pred HHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhc-CcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCCCCchH
Q 007858 298 AVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM-GFDKELIATYVDVSGNNLLHLAAQYSNPKPISKVPGAAL 376 (587)
Q Consensus 298 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~ 376 (587)
++|+++|++ ++.+|.+|+||||+|+..|+.++++.|++. |++++ .+|.+|+||||+|++.|+.++++.|
T Consensus 223 ~lLl~~gad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn----~~d~~G~TpL~~A~~~g~~~iv~~L----- 292 (337)
T 4g8k_A 223 HLLLDHGAD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL----- 292 (337)
T ss_dssp HHHHHTTCC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT----CBCTTSCBHHHHHHHTTCHHHHHHH-----
T ss_pred HHHHHCCCC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc----CcCCCCCCHHHHHHHcCCHHHHHHH-----
Confidence 999999999 799999999999999999999999999985 67755 7999999999999999997776655
Q ss_pred HHHHHhhhHHHHHHhcccccccccCCCCCCchhhhHHh
Q 007858 377 EMQQELKTFKEVETIVKPSFKEMKNNDGKTPWELFTDE 414 (587)
Q Consensus 377 ~~~~~l~~~~~v~~l~~~~~~~~~n~~g~t~l~~a~~~ 414 (587)
+.+|++++ +++||++|.+.
T Consensus 293 --------------l~~GAd~n-----~~~~L~~A~~~ 311 (337)
T 4g8k_A 293 --------------CKRGASTD-----CGDLVMTARRN 311 (337)
T ss_dssp --------------HTTSCSST-----TCCHHHHHHHT
T ss_pred --------------HHCCCCCC-----CCCHHHHHHHc
Confidence 55787765 45699999764
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-40 Score=339.92 Aligned_cols=261 Identities=15% Similarity=0.152 Sum_probs=227.9
Q ss_pred CcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHH--------HccCCCCcc
Q 007858 36 KKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMV--------ELTGHDNLL 107 (587)
Q Consensus 36 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll--------~~~~~~~ll 107 (587)
...+..|.||||.|+..|+ ++++.|+ . .+++...+..|.||||+|+..|+.++|++|+ +.| ++ +
T Consensus 88 ~~~~~~g~t~L~~Aa~~~~-~~~~~L~--~--~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~g--a~-v 159 (373)
T 2fo1_E 88 TEPEPESPIKLHTEAAGSY-AITEPIT--R--ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG--AD-V 159 (373)
T ss_dssp ------CCCHHHHHHHSSS-CCCSCCS--T--TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC--CC-T
T ss_pred cCCCCCCccHHHHHhcCCc-hHHHHhc--c--ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcC--CC-C
Confidence 3567889999999999654 7777776 2 4666662378999999999999998888776 677 88 9
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcC---C-CCCCCCCCchH
Q 007858 108 SLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQN---E-DNLEPDDLENT 183 (587)
Q Consensus 108 ~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~-~~~~~~~g~t~ 183 (587)
+.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++ . .+..+.+|.||
T Consensus 160 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~ 238 (373)
T 2fo1_E 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238 (373)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCH
T ss_pred cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCH
Confidence 999999999999999999999999999999996 899999999999999999999999999987 3 77789999999
Q ss_pred HHHHHHhC---cHHHHHHHHHhcccccccc--------cccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCc
Q 007858 184 FFVSIETG---LYGLALQLLKKNKKLLAGA--------THAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSS 252 (587)
Q Consensus 184 l~~a~~~~---~~~~v~~Ll~~~~~~~~~~--------~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
||.|+..+ +.+++++|++. +..++. .|..|.||||+|+..++
T Consensus 239 L~~A~~~~~~~~~~~v~~Ll~~--g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~------------------------- 291 (373)
T 2fo1_E 239 LMIVAHNEGRDQVASAKLLVEK--GAKVDYDGAARKDSEKYKGRTALHYAAQVSN------------------------- 291 (373)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHH--TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCC-------------------------
T ss_pred HHHHHHhCCcchHHHHHHHHHC--CCCcccccccccCcccccCCCHHHHHHHhCC-------------------------
Confidence 99999998 89999999998 665554 67789999999999998
Q ss_pred hHHHHHHHHHHHHh-hccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHH
Q 007858 253 TQALELVKCLWKEI-SKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTF 331 (587)
Q Consensus 253 ~~~~~~v~~Ll~~~-~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv 331 (587)
.+++++|++++ .+++..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++
T Consensus 292 ---~~~v~~Ll~~~~~~~n~~d-----~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv 362 (373)
T 2fo1_E 292 ---MPIVKYLVGEKGSNKDKQD-----EDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIV 362 (373)
T ss_dssp ---HHHHHHHHHHSCCCTTCCC-----TTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHH
T ss_pred ---HHHHHHHHHhcCCCccCcC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHH
Confidence 99999999987 7777654 4889999999999999999999999999 799999999999999999999999
Q ss_pred HHHHhcCcch
Q 007858 332 KLIYEMGFDK 341 (587)
Q Consensus 332 ~~Ll~~g~~~ 341 (587)
++|++++++.
T Consensus 363 ~~Ll~~~a~~ 372 (373)
T 2fo1_E 363 DIFDRCRPER 372 (373)
T ss_dssp HHHHTTC---
T ss_pred HHHHhcCccc
Confidence 9999998763
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=322.55 Aligned_cols=244 Identities=17% Similarity=0.129 Sum_probs=197.9
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccC---------CCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCC
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTG---------HDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRG 145 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~---------~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~ 145 (587)
...|.|+||+|+..|+.+.+..++..+. ... ++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~ 89 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNP-LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT 89 (285)
T ss_dssp ------------------------------CCSEECCCCT-TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCc-ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence 4679999999999999877777665430 123 6778999999999999999999999999999996 8999
Q ss_pred CCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhh
Q 007858 146 GGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLAR 224 (587)
Q Consensus 146 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~ 224 (587)
.+|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..|+.++++.|++. +...+. +.+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~ 166 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHEAAR 166 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTSCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHH
Confidence 999999999999999999999999998 888999999999999999999999999998 655543 4559999999999
Q ss_pred CCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhC
Q 007858 225 NPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSY 304 (587)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~ 304 (587)
.++ .+++++|++.+.+++..+ ..|.||||+|+..|+.+++++|++++
T Consensus 167 ~g~----------------------------~~~v~~Ll~~g~~~~~~d-----~~g~t~L~~A~~~~~~~~v~~Ll~~g 213 (285)
T 3d9h_A 167 RGH----------------------------VECVNSLIAYGGNIDHKI-----SHLGTPLYLACENQQRACVKKLLESG 213 (285)
T ss_dssp HTC----------------------------HHHHHHHHHTTCCTTCCB-----TTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cCC----------------------------HHHHHHHHHCCCCCCCcC-----CCCCCHHHHHHHcCcHHHHHHHHHCC
Confidence 997 999999999999887655 47899999999999999999999999
Q ss_pred CCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHc
Q 007858 305 PDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQY 362 (587)
Q Consensus 305 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~ 362 (587)
++ ++ .|..|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|+..
T Consensus 214 a~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 214 AD-VN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQ----AKNAEGKRPVELVPPE 265 (285)
T ss_dssp CC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCGGGGSCTT
T ss_pred CC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CcCCCCCCHHHHhcCc
Confidence 99 46 48999999999999999999999999999976 7999999999999943
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.6e-39 Score=319.38 Aligned_cols=251 Identities=17% Similarity=0.138 Sum_probs=173.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
|.+|.||||+|+..|+.++|++|++.+...+.++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~ 84 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTALHL 84 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHH
Confidence 677777777777777777777777776222235667777777777777777777777777777774 6777777777777
Q ss_pred HHHhCChHHHHHHhhcCC-CC-------------CCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHH
Q 007858 155 AALFGQSKMASFLYRQNE-DN-------------LEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMH 220 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~-------------~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh 220 (587)
|+..|+.+++++|+++++ .. .....+.++++.+...+.......++.. .+...+.+|..|.||||
T Consensus 85 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~t~L~ 163 (282)
T 1oy3_D 85 ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDED-WRLQLEAENYDGHTPLH 163 (282)
T ss_dssp HTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCC-GGGGTTCCCTTSCCHHH
T ss_pred HHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhh-hhhcCCCcCCCCcCHHH
Confidence 777777777777777665 11 1223345566666555544444444443 46778889999999999
Q ss_pred HHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHH
Q 007858 221 MLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVL 300 (587)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~L 300 (587)
+|+..++ .+++++|+++|++++..+. ..|.||||+|+..|+.+++++|
T Consensus 164 ~A~~~g~----------------------------~~~v~~Ll~~g~~~~~~~~----~~g~tpL~~A~~~~~~~~v~~L 211 (282)
T 1oy3_D 164 VAVIHKD----------------------------AEMVRLLRDAGADLNKPEP----TCGRTPLHLAVEAQAASVLELL 211 (282)
T ss_dssp HHHHTTC----------------------------HHHHHHHHHHTCCTTCCCT----TTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCC----------------------------HHHHHHHHHcCCCCCCCCC----CCCcCHHHHHHHcCCHHHHHHH
Confidence 9999998 9999999999998886543 2489999999999999999999
Q ss_pred HHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCC
Q 007858 301 TRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSN 364 (587)
Q Consensus 301 l~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~ 364 (587)
+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++ .+|.+|.|||++|....+
T Consensus 212 l~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 212 LKAGAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP----EDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHTTCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC----CCC---------------
T ss_pred HHcCCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC----cCCCcccccccccCCccc
Confidence 999999 79999999999999999999999999999999976 799999999999988754
No 14
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=2.6e-40 Score=339.45 Aligned_cols=255 Identities=13% Similarity=0.031 Sum_probs=202.4
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
|.+|.||||+|+..|+.++|++|++.| ++ ++.+|..|.||||+|+..|+.++|++|+++|++. .+.+|.||||+
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~ 90 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIETG--VS-PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHL 90 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHH
Confidence 666777888888888888888888777 67 7777777788888888888888888888777753 23467778888
Q ss_pred HHHhCChHHHHHHhhc----CC-CCC-----------------CCCCCchHHHHHHHhC--cHHHHHHHHHhcccccccc
Q 007858 155 AALFGQSKMASFLYRQ----NE-DNL-----------------EPDDLENTFFVSIETG--LYGLALQLLKKNKKLLAGA 210 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~----~~-~~~-----------------~~~~g~t~l~~a~~~~--~~~~v~~Ll~~~~~~~~~~ 210 (587)
|+..|+.+++++|++. +. .+. .+.+|.||||.|+..| +.+++++|++. +..++.
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~--ga~~~~ 168 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL--GASPTA 168 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH--TCCTTC
T ss_pred HHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc--CCCCcc
Confidence 8888888888877777 43 222 5667888888888888 88888888887 778888
Q ss_pred cccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHH
Q 007858 211 THAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAH 290 (587)
Q Consensus 211 ~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~ 290 (587)
+|..|.||||+|+..++ .+++++|++.+++....+.+..+..|.||||+|+.
T Consensus 169 ~d~~g~t~L~~A~~~g~----------------------------~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~ 220 (364)
T 3ljn_A 169 KDKADETPLMRAMEFRN----------------------------REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220 (364)
T ss_dssp CCTTSCCHHHHHHHTTC----------------------------HHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHT
T ss_pred cCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhcccccccccccccCCCCCcHHHHHHH
Confidence 88899999999998887 89999999988873332233334588999999999
Q ss_pred cCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhh--------hhhccCCCCcHHHHHHHc
Q 007858 291 SGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELI--------ATYVDVSGNNLLHLAAQY 362 (587)
Q Consensus 291 ~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~--------~~~~d~~G~TpLhlA~~~ 362 (587)
.|+.+++++|+++|++ ++..|..|+||||+|+..|+.+++++|+++|++.+.. ....+..|+|||+.|+..
T Consensus 221 ~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~ 299 (364)
T 3ljn_A 221 INWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299 (364)
T ss_dssp TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCC
T ss_pred cCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhc
Confidence 9999999999999999 7999999999999999999999999999999887531 011577888899888887
Q ss_pred CCCC
Q 007858 363 SNPK 366 (587)
Q Consensus 363 ~~~~ 366 (587)
++.+
T Consensus 300 ~~~~ 303 (364)
T 3ljn_A 300 PSKQ 303 (364)
T ss_dssp HHHH
T ss_pred cCHH
Confidence 7543
No 15
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=5.5e-38 Score=319.89 Aligned_cols=270 Identities=16% Similarity=0.176 Sum_probs=237.6
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
..+..|.||||+|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|++++ ++ ++.+|..|.|
T Consensus 53 ~~d~~g~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~-~~~~~~~g~t 126 (351)
T 3utm_A 53 ASDGRKSTPLHLAAGYNRVRIVQLLL--QHGADVHAK-DKGGLVPLHNACSYGHYEVTELLLKHG--AC-VNAMDLWQFT 126 (351)
T ss_dssp CSSTTCCCHHHHHHHTTCHHHHHHHH--HTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHCC--CC-CCCCCCCCCC
Confidence 45678999999999999999999999 678899887 899999999999999999999999999 88 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcHHHH
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLYGLA 196 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~~~v 196 (587)
|||+|+..|+.+++++|+++|++. +..+..|.||+++|+..+..+.+++.... .++..++..+..+.+
T Consensus 127 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ 194 (351)
T 3utm_A 127 PLHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKG-----------HSLLQAAREADLAKV 194 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHH-----------HHHHHHHHTTCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcc-----------cHHHHHHHhccHHHH
Confidence 999999999999999999999995 89999999999999988888888776643 356777888888888
Q ss_pred HHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhh
Q 007858 197 LQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLK 276 (587)
Q Consensus 197 ~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~ 276 (587)
..++.. .......+..|.||||+|+..++ ....+++++|++.|.+++..+.
T Consensus 195 ~~~l~~--~~~~~~~~~~~~t~L~~A~~~~~-------------------------~~~~~~~~~Ll~~g~~~~~~~~-- 245 (351)
T 3utm_A 195 KKTLAL--EIINFKQPQSHETALHCAVASLH-------------------------PKRKQVAELLLRKGANVNEKNK-- 245 (351)
T ss_dssp HHHTTT--CCTTCCCTTTCCCHHHHHHHCCS-------------------------TTHHHHHHHHHHTTCCTTCCCT--
T ss_pred HHHHHh--hcccccCCCCCCCHHHHHHHHhC-------------------------ccHHHHHHHHHHcCCCcCCcCC--
Confidence 888876 44555677889999999998853 1127899999999988876553
Q ss_pred hccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHH
Q 007858 277 LISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLL 356 (587)
Q Consensus 277 ~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpL 356 (587)
.|.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|+++|++++ .+|..|+||+
T Consensus 246 ---~g~t~L~~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----~~~~~g~tal 317 (351)
T 3utm_A 246 ---DFMTPLHVAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS----IISLQGFTAA 317 (351)
T ss_dssp ---TCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----CCCTTSCCHH
T ss_pred ---CCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----CcCCCCCChh
Confidence 789999999999999999999999999 68899999999999999999999999999999876 6999999999
Q ss_pred HHHHH
Q 007858 357 HLAAQ 361 (587)
Q Consensus 357 hlA~~ 361 (587)
|+|..
T Consensus 318 ~~a~~ 322 (351)
T 3utm_A 318 QMGNE 322 (351)
T ss_dssp HHSCH
T ss_pred hhhhH
Confidence 99854
No 16
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.2e-38 Score=309.73 Aligned_cols=225 Identities=19% Similarity=0.189 Sum_probs=130.8
Q ss_pred CCCCCcHHHHHHhcC-------------CHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc
Q 007858 75 TKGYQTILHVATGAK-------------QTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLL 141 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g-------------~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~ 141 (587)
|.+|.||||+|+..| +.+++++|++.+ +++.+..|..|.||||+|+..|+.+++++|+++|+++
T Consensus 7 d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~- 83 (253)
T 1yyh_A 7 GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA- 83 (253)
T ss_dssp -----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-
Confidence 555666666666554 566666666666 5522344666666666666666666666666666664
Q ss_pred ccCCCCCCcHHHHHHHhCChHHHHHHhhcCC--CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHH
Q 007858 142 TIRGGGQMTPLYIAALFGQSKMASFLYRQNE--DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAM 219 (587)
Q Consensus 142 ~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~L 219 (587)
+.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.|++. +..++.+|..|.|||
T Consensus 84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L 161 (253)
T 1yyh_A 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HADVNAVDDLGKSAL 161 (253)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT--TCCTTCBCTTSCBHH
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc--CCCCCCcCCCCCCHH
Confidence 6666666666666666666666666666654 444555556666666666666666666654 555666667777777
Q ss_pred HHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHH
Q 007858 220 HMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAV 299 (587)
Q Consensus 220 h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~ 299 (587)
|+|+..++ .+++++|++.|++++..+ ..|.||||+|+..|+.+++++
T Consensus 162 ~~A~~~~~----------------------------~~~v~~Ll~~ga~~~~~~-----~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 162 HWAAAVNN----------------------------VDAAVVLLKNGANKDMQN-----NREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp HHHHHHTC----------------------------HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHHcCC----------------------------HHHHHHHHHcCCCCCCcC-----CCCCCHHHHHHHCCCHHHHHH
Confidence 77776665 677777777766665543 366778888888888888888
Q ss_pred HHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcC
Q 007858 300 LTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMG 338 (587)
Q Consensus 300 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g 338 (587)
|+++|++ ++.+|..|+||||+|+.+|+.+++++|.+..
T Consensus 209 Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~ 246 (253)
T 1yyh_A 209 LLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEH 246 (253)
T ss_dssp HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred HHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence 8888888 5778888888888888888888888887654
No 17
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.2e-39 Score=330.42 Aligned_cols=261 Identities=11% Similarity=0.030 Sum_probs=234.8
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
..+..|.||||.|+..|+.++|++|+ +.+.+++.. |..|.||||+|+..|+.++|++|++.+ ++ ..+.+|.|
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll--~~g~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~---~~~~~g~t 86 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLI--ETGVSPTIQ-NRFGCTALHLACKFGCVDTAKYLASVG--EV---HSLWHGQK 86 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHHC--CC---CCCBTTBC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHCC--CC---ccccCCCC
Confidence 45778999999999999999999999 678889887 999999999999999999999999999 44 33458999
Q ss_pred HHHHHHHcCCHHHHHHHHhc----CCccccc-----------------CCCCCCcHHHHHHHhC--ChHHHHHHhhcCC-
Q 007858 117 AFCFAAAVGSVEIAQFMLQR----NPNLLTI-----------------RGGGQMTPLYIAALFG--QSKMASFLYRQNE- 172 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~----~~~l~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~- 172 (587)
|||+|+..|+.+++++|++. +.+. +. .|..|.||||+|+..| +.+++++|++.++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 99999999999999999999 7764 54 8889999999999999 9999999999998
Q ss_pred CCCCCCCCchHHHHHHHhCcHHHHHHHHHhccccc-----ccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhc
Q 007858 173 DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLL-----AGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITN 247 (587)
Q Consensus 173 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~-----~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
++..+.+|.||||.|+..|+.+++++|++. +.. ++.+|..|.||||+|+..++
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~~~g~t~L~~A~~~g~-------------------- 223 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNREALDLMMDT--VPSKSSLRLDYANKQGNSHLHWAILINW-------------------- 223 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--CSCSSSCCTTCCCTTCCCTTHHHHTTTC--------------------
T ss_pred CcccCCCCCCHHHHHHHcCCHHHHHHHHhc--ccccccccccccCCCCCcHHHHHHHcCC--------------------
Confidence 888999999999999999999999999998 665 88899999999999999998
Q ss_pred cCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCc-----------cccccCCCC
Q 007858 248 NTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDL-----------VHQLDENGR 316 (587)
Q Consensus 248 ~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~-----------~~~~d~~g~ 316 (587)
.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|++++++. ....+..|+
T Consensus 224 --------~~~v~~Ll~~gad~~~~d-----~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (364)
T 3ljn_A 224 --------EDVAMRFVEMGIDVNMED-----NEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVW 290 (364)
T ss_dssp --------HHHHHHHHTTTCCTTCCC-----TTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCC
T ss_pred --------HHHHHHHHHcCCCCCCCC-----CCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCccccccccccc
Confidence 999999999999987665 48899999999999999999999997652 122577899
Q ss_pred chHHHHHHcCChhHHHHHHhcCcch
Q 007858 317 SIFHIAVMHRHADTFKLIYEMGFDK 341 (587)
Q Consensus 317 t~Lh~A~~~~~~~iv~~Ll~~g~~~ 341 (587)
||++.|+..++.+.+..|++.+.+.
T Consensus 291 ~~l~~aa~~~~~~~v~~ll~~~~~~ 315 (364)
T 3ljn_A 291 LDFVPAAADPSKQEVLQLLQEKLDE 315 (364)
T ss_dssp CTTSCSSCCHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhccCHHHHHHHHHHHHHH
Confidence 9999999999888888888877665
No 18
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=309.39 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=224.3
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHH
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCF 120 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~ 120 (587)
+|+||||.|+..|+.++++.|+ +.+.+++.. |.+|.||||+|+..|+.++|++|++.| ++ ++.+|..|.||||+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLI--SQGWAVNII-TADHVSPLHEACLGGHLSCVKILLKHG--AQ-VNGVTADWHTPLFN 75 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHH--HTTCCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHH--HCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CC-CCCCCCCCCCHHHH
Confidence 5899999999999999999999 568888877 899999999999999999999999998 88 99999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHH
Q 007858 121 AAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQL 199 (587)
Q Consensus 121 Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~L 199 (587)
|+..|+.+++++|+++|+++ + .+.+|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..++.++++.|
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 153 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKL 153 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHH
Confidence 99999999999999999996 4 35569999999999999999999999999 888999999999999999999999999
Q ss_pred HHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhcc
Q 007858 200 LKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLIS 279 (587)
Q Consensus 200 l~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 279 (587)
++. +..++. +..|.||||+|+..++ .+++++|++.|++++..+ .
T Consensus 154 l~~--g~~~~~-~~~g~t~Lh~A~~~~~----------------------------~~~v~~Ll~~gad~~~~d-----~ 197 (261)
T 2xai_A 154 LES--GADVNQ-GKGQDSPLHAVARTAS----------------------------EELACLLMDFGADTQAKN-----A 197 (261)
T ss_dssp HHH--TCCTTC-CBTTBCHHHHHHHHTC----------------------------HHHHHHHHHTTCCTTCCC-----T
T ss_pred HHc--CCCCCC-CCCCCChHHHHHHcCC----------------------------HHHHHHHHHcCCCCCCcC-----C
Confidence 998 777764 8899999999999997 999999999999988765 4
Q ss_pred CCChHHHHHHHcCcHHHHHHHHHhCCCc-------cccccCCCCchHHHHHHcCChhHHHHHHh
Q 007858 280 KPSKLLFDAAHSGNFKFLAVLTRSYPDL-------VHQLDENGRSIFHIAVMHRHADTFKLIYE 336 (587)
Q Consensus 280 ~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~-------~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 336 (587)
.|.||+|+|+.++ ++++.|++++... .+.+|..|+|++|.|......+.++-++.
T Consensus 198 ~g~tpl~~A~~~~--~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 198 EGKRPVELVPPES--PLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp TSCCGGGGSCTTC--THHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred CCCChhhhccccc--cHHHHHHhccCCccHHHHHHHHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 8999999999765 4889999876542 34679999999999999888877776654
No 19
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=5.4e-39 Score=312.17 Aligned_cols=226 Identities=14% Similarity=0.133 Sum_probs=177.5
Q ss_pred cccCCCCCCcHHHHHHHcC-------------CHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-
Q 007858 107 LSLQDENGNTAFCFAAAVG-------------SVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE- 172 (587)
Q Consensus 107 l~~~d~~g~TpLh~Aa~~g-------------~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~- 172 (587)
++.+|.+|.||||+|+..| +.+++++|++.|+++....|..|.||||+|+..|+.+++++|+++++
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7889999999999999987 89999999999999867779999999999999999999999999998
Q ss_pred CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCc
Q 007858 173 DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSS 252 (587)
Q Consensus 173 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (587)
.+..+..|.||||.|+..++.++++.|++. .+...+.++..|.||||+|+..++
T Consensus 83 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~A~~~~~------------------------- 136 (253)
T 1yyh_A 83 ANIQDNMGRTPLHAAVSADAQGVFQILIRN-RATDLDARMHDGTTPLILAARLAV------------------------- 136 (253)
T ss_dssp TTCCCTTSCCHHHHHHHHTCHHHHHHHHHS-TTSCTTCCCTTCCCHHHHHHHHTC-------------------------
T ss_pred CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCccccCCCCCcHHHHHHHcCh-------------------------
Confidence 888999999999999999999999999998 555888899999999999999987
Q ss_pred hHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHH
Q 007858 253 TQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFK 332 (587)
Q Consensus 253 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~ 332 (587)
.+++++|++.|.+++..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.++++
T Consensus 137 ---~~~v~~Ll~~g~~~~~~d-----~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~ 207 (253)
T 1yyh_A 137 ---EGMLEDLINSHADVNAVD-----DLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAK 207 (253)
T ss_dssp ---SSHHHHHHHTTCCTTCBC-----TTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred ---HHHHHHHHHcCCCCCCcC-----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHH
Confidence 899999999999887665 3789999999999999999999999999 7999999999999999999999999
Q ss_pred HHHhcCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCC
Q 007858 333 LIYEMGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKV 371 (587)
Q Consensus 333 ~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l 371 (587)
+|+++|++++ .+|..|+||||+|++.|+.+++++|
T Consensus 208 ~Ll~~ga~~~----~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 208 VLLDHFANRD----ITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHHHTTCCTT----CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCCcc----ccccCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999976 6999999999999999997766554
No 20
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.6e-37 Score=299.08 Aligned_cols=223 Identities=15% Similarity=0.090 Sum_probs=119.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHH----ccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCc
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVE----LTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMT 150 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~t 150 (587)
|.+|.||||+|+..|+.+++++|++ .+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 81 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG--RE-LDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQT 81 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT--CC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcC--CC-CCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCC
Confidence 6677777777777777777777776 33 55 6677777777777777777777777777777774 666777777
Q ss_pred HHHHHHHhCChHHHHHHhhcCC-----CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccc-cCCchHHHHHhh
Q 007858 151 PLYIAALFGQSKMASFLYRQNE-----DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATH-AKYGTAMHMLAR 224 (587)
Q Consensus 151 pL~~A~~~g~~~~v~~Ll~~~~-----~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~a~~ 224 (587)
|||+|+..|+.+++++|++.++ .+..+..|.||||.|+..++.++++.|++. +...+..+ ..|.||||+|+.
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~g~t~L~~A~~ 159 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVE 159 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCcHHHHHHH
Confidence 7777777777777777777664 122333344444444444444444444443 33333333 334444444444
Q ss_pred CCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhC
Q 007858 225 NPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSY 304 (587)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~ 304 (587)
.++ .+++++|+++|.+++..+ ..|.||||+|+..|+.+++++|+++|
T Consensus 160 ~~~----------------------------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~v~~Ll~~g 206 (241)
T 1k1a_A 160 NNS----------------------------LSMVQLLLQHGANVNAQM-----YSGSSALHSASGRGLLPLVRTLVRSG 206 (241)
T ss_dssp TTC----------------------------HHHHHHHHHTTCCTTCBC-----TTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred cCC----------------------------HHHHHHHHHcCCCCCCcC-----CCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 443 344444444443333222 13344444444444444444444444
Q ss_pred CCccccccCCCCchHHHHHHcCChhHHHHHHhc
Q 007858 305 PDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM 337 (587)
Q Consensus 305 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 337 (587)
++ ++.+|..|+||||+|+..|+.++++.|.++
T Consensus 207 a~-~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~ 238 (241)
T 1k1a_A 207 AD-SSLKNCHNDTPLMVARSRRVIDILRGKATR 238 (241)
T ss_dssp CC-TTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred CC-CCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence 44 344444444444444444444444444433
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.7e-38 Score=311.10 Aligned_cols=253 Identities=16% Similarity=0.120 Sum_probs=187.8
Q ss_pred ccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcc--cccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCch
Q 007858 106 LLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNL--LTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLEN 182 (587)
Q Consensus 106 ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t 182 (587)
+++.+|..|.||||+|++.|+.++|++|++.|++. .+.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.|
T Consensus 1 i~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t 80 (282)
T 1oy3_D 1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHT 80 (282)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCC
T ss_pred CCCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence 46789999999999999999999999999998872 38899999999999999999999999999999 8889999999
Q ss_pred HHHHHHHhCcHHHHHHHHHhccccccc-------------ccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccC
Q 007858 183 TFFVSIETGLYGLALQLLKKNKKLLAG-------------ATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNT 249 (587)
Q Consensus 183 ~l~~a~~~~~~~~v~~Ll~~~~~~~~~-------------~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (587)
|||+|+..++.++++.|++. +.... .....+.++++.++..+..
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 137 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQP--RPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE--------------------- 137 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSS--CCSSCCCC--------------------------------------------------
T ss_pred HHHHHHHcCCcchhHhhhcc--CCCCchhhHHHHhhcccccCcchhcchhhhccccccc---------------------
Confidence 99999999999999999987 32211 1222344555554443320
Q ss_pred CCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccC-CCCchHHHHHHcCCh
Q 007858 250 DSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDE-NGRSIFHIAVMHRHA 328 (587)
Q Consensus 250 ~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~ 328 (587)
......+...+.+++.. +..|.||||.|+..|+.+++++|++++++ ++..+. .|+||||+|+.+|+.
T Consensus 138 ------~~~~~~~~~~~~~~~~~-----~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~ 205 (282)
T 1oy3_D 138 ------NEEEPRDEDWRLQLEAE-----NYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAA 205 (282)
T ss_dssp ------------CCCGGGGTTCC-----CTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCH
T ss_pred ------hhhhhhhhhhhhcCCCc-----CCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCH
Confidence 22223333334444433 45889999999999999999999999999 677775 599999999999999
Q ss_pred hHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCCCCchHHHHHHhhhHHHHHHhcccccccccCCCCCCch
Q 007858 329 DTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKVPGAALEMQQELKTFKEVETIVKPSFKEMKNNDGKTPW 408 (587)
Q Consensus 329 ~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~g~t~l 408 (587)
+++++|+++|++++ .+|..|+||||+|+..++.++++.| +.+|++++.+|.+|+||+
T Consensus 206 ~~v~~Ll~~gad~~----~~d~~g~tpL~~A~~~~~~~~v~~L-------------------l~~ga~~~~~~~~g~tpl 262 (282)
T 1oy3_D 206 SVLELLLKAGADPT----ARMYGGRTPLGSALLRPNPILARLL-------------------RAHGAPEPEDGGDKLSPC 262 (282)
T ss_dssp HHHHHHHHTTCCTT----CCCTTSCCHHHHHHTSSCHHHHHHH-------------------HHTTCCCCCCC-------
T ss_pred HHHHHHHHcCCCCc----ccccCCCCHHHHHHHcCCcHHHHHH-------------------HHcCCCcCcCCCcccccc
Confidence 99999999999976 7999999999999999997766655 568999999999999999
Q ss_pred hhhHHhhh
Q 007858 409 ELFTDEHK 416 (587)
Q Consensus 409 ~~a~~~~~ 416 (587)
++|.+...
T Consensus 263 ~~a~~~~~ 270 (282)
T 1oy3_D 263 SSSGSDSD 270 (282)
T ss_dssp --------
T ss_pred cccCCccc
Confidence 99976543
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.2e-37 Score=294.90 Aligned_cols=220 Identities=20% Similarity=0.229 Sum_probs=174.1
Q ss_pred hhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCC
Q 007858 70 LRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQM 149 (587)
Q Consensus 70 ~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~ 149 (587)
++.. |.+|.||||+|+..|+.+++++|++.| .+ ++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.
T Consensus 4 ~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 78 (237)
T 3b7b_A 4 FKME-HQNKRSPLHAAAEAGHVDICHMLVQAG--AN-IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGS 78 (237)
T ss_dssp CCCS-SCCSCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSC
T ss_pred cccc-cCCCCCHHHHHHHcCcHHHHHHHHHcC--CC-cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCC
Confidence 3344 777888888888888888888888887 77 7778888888888888888888888888888875 77788888
Q ss_pred cHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCc
Q 007858 150 TPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAF 229 (587)
Q Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~ 229 (587)
||||+|+..|+.+++++|++.++ ...+..+..|.||||+|+..++
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~---------------------------------~~~~~~~~~g~t~L~~A~~~~~-- 123 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQ---------------------------------MDVNCQDDGGWTPMIWATEYKH-- 123 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTC---------------------------------CCTTCCCTTSCCHHHHHHHTTC--
T ss_pred cHHHHHHHcCCHHHHHHHHhCCC---------------------------------CCcccCCCCCCCHHHHHHHcCC--
Confidence 88888888888888888887763 3334455556666666666655
Q ss_pred ccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccc
Q 007858 230 TSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVH 309 (587)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~ 309 (587)
.+++++|++.|.+++..+ ..|.||||.|+..|+.+++++|++++++ ++
T Consensus 124 --------------------------~~~~~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~ 171 (237)
T 3b7b_A 124 --------------------------VDLVKLLLSKGSDINIRD-----NEENICLHWAAFSGCVDIAEILLAAKCD-LH 171 (237)
T ss_dssp --------------------------HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHCCHHHHHHHHTTTCC-TT
T ss_pred --------------------------HHHHHHHHHCCCCCCccC-----CCCCCHHHHHHHCCCHHHHHHHHHcCCC-CC
Confidence 666666666666555433 3678888888888999999999999999 68
Q ss_pred cccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCCC
Q 007858 310 QLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSNP 365 (587)
Q Consensus 310 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~ 365 (587)
..|..|+||||+|+..|+.+++++|+++|++++ .+|.+|+||||+|+..++.
T Consensus 172 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 172 AVNIHGDSPLHIAARENRYDCVVLFLSRDSDVT----LKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT----CCCTTSCCHHHHSCTTCHH
T ss_pred CcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCC----ccCCCCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999876 6899999999999988863
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=6.1e-37 Score=294.46 Aligned_cols=225 Identities=16% Similarity=0.212 Sum_probs=185.6
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
..+..|.||||.|+..|+.+++++|+ +.+.+++.. +..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.|
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t 79 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLV--QAGANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKAG--AL-VDPKDAEGST 79 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTTT--CC-CCCCCTTSCC
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHH--HcCCCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhCC--CC-CCCCCCCCCc
Confidence 45788999999999999999999999 678888877 899999999999999999999999998 88 8999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHH
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGL 195 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~ 195 (587)
|||+|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||.|+..|+.++
T Consensus 80 ~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~ 159 (237)
T 3b7b_A 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDI 159 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHH
Confidence 99999999999999999999943358899999999999999999999999999887 55555555555555555555555
Q ss_pred HHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhh
Q 007858 196 ALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVL 275 (587)
Q Consensus 196 v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~ 275 (587)
++.|++ .|.+++..+
T Consensus 160 ~~~Ll~---------------------------------------------------------------~g~~~~~~~-- 174 (237)
T 3b7b_A 160 AEILLA---------------------------------------------------------------AKCDLHAVN-- 174 (237)
T ss_dssp HHHHHT---------------------------------------------------------------TTCCTTCCC--
T ss_pred HHHHHH---------------------------------------------------------------cCCCCCCcC--
Confidence 555555 444433322
Q ss_pred hhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 007858 276 KLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYE 336 (587)
Q Consensus 276 ~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 336 (587)
..|.||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+.+++.+.+..+++
T Consensus 175 ---~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 175 ---IHGDSPLHIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp ---TTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred ---CCCCCHHHHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 2557777777777788888888888888 68888889999999998888766555554
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.5e-37 Score=299.29 Aligned_cols=226 Identities=16% Similarity=0.138 Sum_probs=204.0
Q ss_pred ccccCCCCCCcHHHHHHHcCCHHHHHHHHh----cCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCC
Q 007858 106 LLSLQDENGNTAFCFAAAVGSVEIAQFMLQ----RNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDL 180 (587)
Q Consensus 106 ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~----~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g 180 (587)
+++.+|.+|+||||+|++.|+.+++++|++ .+.++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|
T Consensus 1 l~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 79 (241)
T 1k1a_A 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHG 79 (241)
T ss_dssp ------CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred CccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCC
Confidence 357789999999999999999999999997 67775 8899999999999999999999999999998 88889999
Q ss_pred chHHHHHHHhCcHHHHHHHHHhcccc----cccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHH
Q 007858 181 ENTFFVSIETGLYGLALQLLKKNKKL----LAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQAL 256 (587)
Q Consensus 181 ~t~l~~a~~~~~~~~v~~Ll~~~~~~----~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (587)
.||||.|+..++.++++.|++. +. ..+..|..|.||||+|+..++ .
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~----------------------------~ 129 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDS--AAPGTLDLEARNYDGLTALHVAVNTEC----------------------------Q 129 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHH--SCTTSCCTTCCCTTSCCHHHHHHHHTC----------------------------H
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCccccccccCcCCCcHHHHHHHcCC----------------------------H
Confidence 9999999999999999999998 43 677889999999999999997 9
Q ss_pred HHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHh
Q 007858 257 ELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYE 336 (587)
Q Consensus 257 ~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 336 (587)
+++++|++.|.+++..+. ..|.||||.|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|++
T Consensus 130 ~~~~~Ll~~g~~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 204 (241)
T 1k1a_A 130 ETVQLLLERGADIDAVDI----KSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVR 204 (241)
T ss_dssp HHHHHHHHTTCCTTCCCT----TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHcCCCcccccc----cCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 999999999998876542 3689999999999999999999999999 79999999999999999999999999999
Q ss_pred cCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCC
Q 007858 337 MGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKV 371 (587)
Q Consensus 337 ~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l 371 (587)
+|++++ .+|..|+||||+|+..++.++++.|
T Consensus 205 ~ga~~~----~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 205 SGADSS----LKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp TTCCTT----CCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred cCCCCC----CcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 999976 6999999999999999988777666
No 25
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=5e-37 Score=293.82 Aligned_cols=226 Identities=19% Similarity=0.174 Sum_probs=171.8
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHH
Q 007858 40 SHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFC 119 (587)
Q Consensus 40 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh 119 (587)
..+.+|||.|+..|+.+.++.++ +..+..++.. +.+|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~ 78 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERI-LADKSLATRT-DQDSRTALHWACSAGHTEIVEFLLQLG--VP-VNDKDDAGWSPLH 78 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHH-HHCGGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CC-SCCCCTTSCCHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHH-HhchhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHhC--CC-CCCcCCCCCCHHH
Confidence 45778888888888888888888 5555555555 788888888888888888888888887 77 7788888888888
Q ss_pred HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHH
Q 007858 120 FAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQ 198 (587)
Q Consensus 120 ~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~ 198 (587)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+. .+..+.
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~-------------------- 137 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH-------------------- 137 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCT--------------------
T ss_pred HHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCC--------------------
Confidence 888888888888888888885 7788888888888888888888888887776 444444
Q ss_pred HHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhc
Q 007858 199 LLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLI 278 (587)
Q Consensus 199 Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 278 (587)
.|.||||+|+..++ .+++++|++.+.+++..+
T Consensus 138 ---------------~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~~~~~~~----- 169 (231)
T 3aji_A 138 ---------------YDATAMHRAAAKGN----------------------------LKMVHILLFYKASTNIQD----- 169 (231)
T ss_dssp ---------------TSCCHHHHHHHHTC----------------------------HHHHHHHHHTTCCSCCCC-----
T ss_pred ---------------CCCcHHHHHHHcCC----------------------------HHHHHHHHhcCCCccccC-----
Confidence 44455555544443 455555555554444332
Q ss_pred cCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcc
Q 007858 279 SKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFD 340 (587)
Q Consensus 279 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~ 340 (587)
..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++|++
T Consensus 170 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 170 TEGNTPLHLACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 2567777777777888888888888888 688888899999999888888999988887764
No 26
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.7e-36 Score=290.12 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=177.7
Q ss_pred cccceeecCCCCCCCCCCcCCC----CcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcC
Q 007858 14 QEISISITGRDPANSVQPLQND----KKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAK 89 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g 89 (587)
..+..++...+.+....+++.+ ...+..|.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|
T Consensus 8 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~ 84 (231)
T 3aji_A 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL--QLGVPVNDK-DDAGWSPLHIAASAG 84 (231)
T ss_dssp SHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHH--HTTCCSCCC-CTTSCCHHHHHHHHT
T ss_pred chHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHH--HhCCCCCCc-CCCCCCHHHHHHHcC
Confidence 3455555555555444444332 345789999999999999999999999 668888877 899999999999999
Q ss_pred CHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhh
Q 007858 90 QTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYR 169 (587)
Q Consensus 90 ~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (587)
+.+++++|++++ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++
T Consensus 85 ~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 160 (231)
T 3aji_A 85 XDEIVKALLVKG--AH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLF 160 (231)
T ss_dssp CHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence 999999999998 88 8999999999999999999999999999999995 8899999999999999999999999999
Q ss_pred cCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 170 QNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 170 ~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
.++ .+..+.+|.||||.|+..++.+++++|+++ +..++.+|..|.||||+|+..++
T Consensus 161 ~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~ 217 (231)
T 3aji_A 161 YKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--GASIYIENKEEKTPLQVAKGGLG 217 (231)
T ss_dssp TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHSCHHHH
T ss_pred cCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHhhHH
Confidence 998 777888888999988888888888888887 77778888888888888877664
No 27
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2e-37 Score=308.75 Aligned_cols=262 Identities=18% Similarity=0.188 Sum_probs=219.5
Q ss_pred HHHHcCCHHHHHHHHhhcCccchh--------hhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHH
Q 007858 48 KAALKGDCNEAKRILGDDHQSMLR--------AAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFC 119 (587)
Q Consensus 48 ~Aa~~g~~~~v~~Ll~~~~~~~~~--------~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh 119 (587)
.++..|+.+.++.++ ... ..+. ...+..|.||||.||..|+.++|++|++.| ++ ++.+|..|.||||
T Consensus 4 ~~a~~~~~~~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~ 78 (299)
T 1s70_B 4 ADAKQKRNEQLKRWI-GSE-TDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERG--AD-INYANVDGLTALH 78 (299)
T ss_dssp HHHHHHHHHHHHHHH-HTT-TSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHC--CC-TTCBCTTCCBHHH
T ss_pred hHHHHHHHHHHHHHH-ccc-cccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcC--CC-CcccCCCCCCHHH
Confidence 467888888888888 322 1111 112446789999999999999999999999 88 9999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHH
Q 007858 120 FAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQ 198 (587)
Q Consensus 120 ~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~ 198 (587)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+.+|.||||.|+..++.++++.
T Consensus 79 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 157 (299)
T 1s70_B 79 QACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQN 157 (299)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHH
Confidence 999999999999999999996 8999999999999999999999999999998 88899999999999999999999999
Q ss_pred HHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhc
Q 007858 199 LLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLI 278 (587)
Q Consensus 199 Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~ 278 (587)
++.. .+...+..+..+.++++ ..+..++..+..... ..+
T Consensus 158 ll~~-~~~~~~~~~~~~~~~~~------------------------------------~~~~~~l~~~~~~~~----~~~ 196 (299)
T 1s70_B 158 EVNR-QGVDIEAARKEEERIML------------------------------------RDARQWLNSGHINDV----RHA 196 (299)
T ss_dssp HHHH-HTCCHHHHHHHHHHHHH------------------------------------HHHHHHHHHTCCCCC----CCT
T ss_pred HHhh-cCCCchhhhhhhhhHHH------------------------------------HHHHHHHhccCcchh----hhc
Confidence 9987 45544443333333322 233344444433222 123
Q ss_pred cCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHH
Q 007858 279 SKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHL 358 (587)
Q Consensus 279 ~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhl 358 (587)
..|.||||.|+..|+.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|+++|++++ .+|..|+||||+
T Consensus 197 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----~~d~~g~t~l~~ 271 (299)
T 1s70_B 197 KSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----AVNKVGQTAFDV 271 (299)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCTTTS
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----CcCCCCCCHHHH
Confidence 4789999999999999999999999999 79999999999999999999999999999999976 699999999999
Q ss_pred HHH
Q 007858 359 AAQ 361 (587)
Q Consensus 359 A~~ 361 (587)
|+.
T Consensus 272 A~~ 274 (299)
T 1s70_B 272 ADE 274 (299)
T ss_dssp CCS
T ss_pred HHH
Confidence 964
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-37 Score=303.45 Aligned_cols=229 Identities=16% Similarity=0.189 Sum_probs=139.9
Q ss_pred CcccCCCChHhHHHHHcCCHHHHHHHHhhcCccc--------hhhhcCCCCCcHHHHHHhcCCH-HHHHHHHHccCCCCc
Q 007858 36 KKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSM--------LRAAVTKGYQTILHVATGAKQT-NFVKQMVELTGHDNL 106 (587)
Q Consensus 36 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~--------~~~~~~~~g~t~Lh~A~~~g~~-~iv~~Ll~~~~~~~l 106 (587)
.+.++.+.++|+.||..|+.++|+.|+ +.+.+ ++.. +..|.||||.|+..++. ++++.|++.| ++
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL--~~~~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--ad- 78 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLL--EWTEEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPASG--LG- 78 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHH--TCC-----------------------------------------CC--CC-
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHH--HCCCccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHCC--CC-
Confidence 345667778888888888888888888 33322 2233 56677777777776654 3677777777 77
Q ss_pred cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHH
Q 007858 107 LSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFV 186 (587)
Q Consensus 107 l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~ 186 (587)
++.+|.+|+||||+|+..|+.++|++|++.++++ +.++.+|.||+|.|+..++.+++++|++.++
T Consensus 79 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~-------------- 143 (269)
T 4b93_B 79 VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNA-------------- 143 (269)
T ss_dssp TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC--------------
T ss_pred CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCC--------------
Confidence 7777777777777777777777777777777774 7777777777777777777777777776665
Q ss_pred HHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHh
Q 007858 187 SIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEI 266 (587)
Q Consensus 187 a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~ 266 (587)
.++.+|..|.||||+|+..|+ .+++++|++.|
T Consensus 144 --------------------~~n~~d~~g~TpL~~A~~~g~----------------------------~~~v~~Ll~~g 175 (269)
T 4b93_B 144 --------------------KPNKKDLSGNTPLIYACSGGH----------------------------HELVALLLQHG 175 (269)
T ss_dssp --------------------CSCCCCTTCCCHHHHHHHTTC----------------------------GGGHHHHHHTT
T ss_pred --------------------CCCCCCCCCCCHHHHHHHCCC----------------------------HHHHHHHHHCC
Confidence 344556666666666666665 56666666666
Q ss_pred hccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCC-hhHHHHHHhcCc
Q 007858 267 SKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRH-ADTFKLIYEMGF 339 (587)
Q Consensus 267 ~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~-~~iv~~Ll~~g~ 339 (587)
++++..+ ..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++++ .++++.+.+.+.
T Consensus 176 advn~~~-----~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~i~~lL~~l~~~~~ 243 (269)
T 4b93_B 176 ASINASN-----NKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSKIMELLQVVPSCVA 243 (269)
T ss_dssp CCTTCBC-----TTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCHHHHHTTC------
T ss_pred CCCCccc-----cCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCcHHHHHHHHHHhch
Confidence 6665443 3678888888888888999999999988 68899999999999987765 344444444443
No 29
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.1e-35 Score=285.80 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=170.7
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
|..|.||||.|++.|+.+++++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++....+..|.||||+
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~ 82 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEAG--YD-VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHW 82 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHcC--CC-cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHH
Confidence 556666777777777777777777666 56 666666677777777777777777777776666544444556677777
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCC
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNC 233 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 233 (587)
|+..|+.+++++|++.++ .+..+..|.||||.|+..++.+++++|+++ +..++.++..|.||||+|+..++.
T Consensus 83 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~g~t~l~~a~~~~~~----- 155 (240)
T 3eu9_A 83 ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMTPLMWAAYRTHS----- 155 (240)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHCCS-----
T ss_pred HHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc--CCCccccCCCCCcHHHHHHHhCCh-----
Confidence 777777777777776666 555666666777777777777777777765 666677788888888888855531
Q ss_pred CCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccC
Q 007858 234 PGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDE 313 (587)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~ 313 (587)
.++++.|++.+.+++..+. ..|.||||.|+..|+.+++++|+++|++ ++..|.
T Consensus 156 ----------------------~~~~~~L~~~~~~~~~~~~----~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~ 208 (240)
T 3eu9_A 156 ----------------------VDPTRLLLTFNVSVNLGDK----YHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNI 208 (240)
T ss_dssp ----------------------STTHHHHHHTTCCTTCCCT----TTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCT
T ss_pred ----------------------HHHHHHHHhcCCCcchhhc----cCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCC
Confidence 5677888888877765442 2678999999999999999999999999 699999
Q ss_pred CCCchHHHHHHcCChhHHHHHHhcCcchh
Q 007858 314 NGRSIFHIAVMHRHADTFKLIYEMGFDKE 342 (587)
Q Consensus 314 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 342 (587)
.|+||||+|+..|+.+++++|++++.+..
T Consensus 209 ~g~t~l~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 209 KGESALDLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHC----
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHhhhccC
Confidence 99999999999999999999999988754
No 30
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.6e-35 Score=282.77 Aligned_cols=92 Identities=23% Similarity=0.309 Sum_probs=46.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CcccccCCCCCCcHHHHH
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRN--PNLLTIRGGGQMTPLYIA 155 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~--~~l~~~~~~~g~tpL~~A 155 (587)
|+||||.|+..|+.++|++|++.+ .+..+.+|..|.||||+|+..|+.+++++|+++| +++....|..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK--PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC--GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC--ccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 445555555555555555555554 3323334555555555555555555555555555 332112445555555555
Q ss_pred HHhCChHHHHHHhhcC
Q 007858 156 ALFGQSKMASFLYRQN 171 (587)
Q Consensus 156 ~~~g~~~~v~~Ll~~~ 171 (587)
+..|+.+++++|++++
T Consensus 80 ~~~~~~~~~~~Ll~~g 95 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRP 95 (228)
T ss_dssp HHHCCHHHHHHHHSSS
T ss_pred HHcCCHHHHHHHHhCC
Confidence 5555555555555554
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9.7e-36 Score=294.34 Aligned_cols=238 Identities=12% Similarity=0.077 Sum_probs=206.9
Q ss_pred HHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHH
Q 007858 50 ALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEI 129 (587)
Q Consensus 50 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~i 129 (587)
+..++.+.+..++ .+. +++.+ |.+|.||||+|+..|+.++|++|++.| ++ ++.+ +|.||||+|+..|+.++
T Consensus 7 i~~~~~~~v~~lL-~~~--~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~--~g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 7 INTWKSKQLKSFL-SSK--DTFKA-DVHGHSASYYAIADNNVRLVCTLLNAG--AL-KNLL--ENEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGGCCHHHHHHHH-HST--TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--GG-GSCC--TTCCHHHHHTTSSSCHH
T ss_pred HHhcCHHHHHHHH-HhC--CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhCC--CC-CCCC--CCCCHHHHHHHcCCHHH
Confidence 4456666677777 343 46666 899999999999999999999999998 77 6666 48999999999999999
Q ss_pred HHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCC-chHHHHHHHhCcHHHHHHHHHhccccc
Q 007858 130 AQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDL-ENTFFVSIETGLYGLALQLLKKNKKLL 207 (587)
Q Consensus 130 v~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~l~~a~~~~~~~~v~~Ll~~~~~~~ 207 (587)
+++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..| .||||.|+..|+.+++++|+++ +..
T Consensus 78 v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~--g~~ 154 (285)
T 3kea_A 78 VKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPS 154 (285)
T ss_dssp HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT--SCT
T ss_pred HHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCc
Confidence 99999999995 8899999999999999999999999999998 88888888 7999999999999999999998 443
Q ss_pred cccccc-CCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChH-H
Q 007858 208 AGATHA-KYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKL-L 285 (587)
Q Consensus 208 ~~~~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~-L 285 (587)
. .+. .|.||||+|+..++ .+++++|+++|++++..+. .|.|| |
T Consensus 155 ~--~~~~~g~t~L~~A~~~g~----------------------------~~~v~~Ll~~gad~n~~~~-----~g~t~~L 199 (285)
T 3kea_A 155 T--FDLAILLSCIHITIKNGH----------------------------VDMMILLLDYMTSTNTNNS-----LLFIPDI 199 (285)
T ss_dssp T--CCCSTHHHHHHHHHHTTC----------------------------HHHHHHHHHHHHHTCTTCC-----CBCCTTH
T ss_pred c--ccccCCccHHHHHHHcCh----------------------------HHHHHHHHHcCCCCCcccC-----CCCChHH
Confidence 3 333 89999999999998 9999999999999887653 78897 9
Q ss_pred HHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 007858 286 FDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342 (587)
Q Consensus 286 h~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 342 (587)
|+|+..|+.+++++|+++|++ ++..| +.|+..|+.+++++|+++|++++
T Consensus 200 ~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 200 KLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp HHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 999999999999999999999 57776 35678999999999999998864
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=2.4e-35 Score=281.43 Aligned_cols=211 Identities=20% Similarity=0.199 Sum_probs=193.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC---CCC-CCCCCchHHHHHHH
Q 007858 114 GNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE---DNL-EPDDLENTFFVSIE 189 (587)
Q Consensus 114 g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~---~~~-~~~~g~t~l~~a~~ 189 (587)
|+||||+|++.|+.++++.|++.+++....+|..|.||||+|+..|+.+++++|++.++ .+. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 78999999999999999999999999767799999999999999999999999999995 333 78899999999999
Q ss_pred hCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhcc
Q 007858 190 TGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKS 269 (587)
Q Consensus 190 ~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~ 269 (587)
.|+.++++.|++...+...+..|..|.||||+|+..++ .+++++|+++|.++
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~----------------------------~~~~~~Ll~~g~~~ 133 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKW----------------------------FEVSQFLIENGASV 133 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTC----------------------------HHHHHHHHHTTCCS
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCC----------------------------HhHHHHHHHcCCCc
Confidence 99999999999981127788899999999999999997 99999999999988
Q ss_pred chhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhC-CCccccccCCCCchHHHHHHcCChhHHHHHH-hcCcchhhhhhh
Q 007858 270 THKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSY-PDLVHQLDENGRSIFHIAVMHRHADTFKLIY-EMGFDKELIATY 347 (587)
Q Consensus 270 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~-~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~~~ 347 (587)
+..+. .|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+..|+.+++++|+ +.|++++ .
T Consensus 134 ~~~~~-----~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~----~ 203 (228)
T 2dzn_A 134 RIKDK-----FNQIPLHRAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD----L 203 (228)
T ss_dssp CCCCT-----TSCCHHHHHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC----C
T ss_pred cccCC-----CCCCHHHHHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC----c
Confidence 76654 7899999999999999999999999 56 7999999999999999999999999999 8999976 6
Q ss_pred ccCCCCcHHHHHHHc
Q 007858 348 VDVSGNNLLHLAAQY 362 (587)
Q Consensus 348 ~d~~G~TpLhlA~~~ 362 (587)
+|.+|+||||+|+..
T Consensus 204 ~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 204 VDNKGAKAEDVALNE 218 (228)
T ss_dssp BCTTSCBGGGGCSST
T ss_pred cCCCCCcHHHHHHHH
Confidence 999999999999765
No 33
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=295.68 Aligned_cols=217 Identities=20% Similarity=0.297 Sum_probs=163.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCC-----CccccCCCCCCcHHHHHHHcCCH-HHHHHHHhcCCcccccCCCCC
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHD-----NLLSLQDENGNTAFCFAAAVGSV-EIAQFMLQRNPNLLTIRGGGQ 148 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-----~ll~~~d~~g~TpLh~Aa~~g~~-~iv~~Ll~~~~~l~~~~~~~g 148 (587)
|.++.+||+.||+.|+.++|++|++.+... +.++..|..|.||||.|+..++. .+++.|++.|+++ +.+|.+|
T Consensus 8 d~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~d~~G 86 (269)
T 4b93_B 8 DYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVTSQDG 86 (269)
T ss_dssp CCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCT-TCCCTTS
T ss_pred CccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCcCCCC
Confidence 667889999999999999999999987210 11456778889999999887765 4788899999995 8889999
Q ss_pred CcHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCC
Q 007858 149 MTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSA 228 (587)
Q Consensus 149 ~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~ 228 (587)
.||||+|+..|+.+++++|++.++ .++.++.+|.||+|.|+..++
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~~a----------------------------------~~~~~~~~g~t~l~~a~~~~~- 131 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKHGA----------------------------------NAGARNADQAVPLHLACQQGH- 131 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHTTC----------------------------------CTTCCCTTCCCHHHHHHHHTC-
T ss_pred CCHHHHHHHcCcHHHHHHHHhcCC----------------------------------CcCccCCCCCCccccccccCh-
Confidence 999999999999999988888765 344567778888888888876
Q ss_pred cccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCcc
Q 007858 229 FTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLV 308 (587)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~ 308 (587)
.++++.|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++ +
T Consensus 132 ---------------------------~~~~~~Ll~~g~~~n~~d-----~~g~TpL~~A~~~g~~~~v~~Ll~~gad-v 178 (269)
T 4b93_B 132 ---------------------------FQVVKCLLDSNAKPNKKD-----LSGNTPLIYACSGGHHELVALLLQHGAS-I 178 (269)
T ss_dssp ---------------------------HHHHHHHHHTTCCSCCCC-----TTCCCHHHHHHHTTCGGGHHHHHHTTCC-T
T ss_pred ---------------------------HHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHCCCHHHHHHHHHCCCC-C
Confidence 889999999998887665 4889999999999999999999999999 7
Q ss_pred ccccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCC
Q 007858 309 HQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSN 364 (587)
Q Consensus 309 ~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~ 364 (587)
+..|..|+||||+|+.+|+.+++++|+++|++++ .+|.+|+||||+|+++++
T Consensus 179 n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~----~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 179 NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQ----VLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSC----CCCTTSCCSGGGSCTTCH
T ss_pred CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCC----CcCCCCCCHHHHHHhCCc
Confidence 9999999999999999999999999999999976 799999999999988764
No 34
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-35 Score=292.96 Aligned_cols=251 Identities=21% Similarity=0.209 Sum_probs=212.8
Q ss_pred CcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCC
Q 007858 36 KKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGN 115 (587)
Q Consensus 36 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~ 115 (587)
...+..+.||||.|+..|+.++++.|+ +.+.+++.. |.+|.||||+|+..|+.++|++|++.| ++ ++.+|..|.
T Consensus 34 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~-~~~~~~~g~ 107 (299)
T 1s70_B 34 TKVKFDDGAVFLAACSSGDTEEVLRLL--ERGADINYA-NVDGLTALHQACIDDNVDMVKFLVENG--AN-INQPDNEGW 107 (299)
T ss_dssp CCCEECHHHHHHHHHHHTCHHHHHHHH--HHCCCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSC
T ss_pred cccccCCccHHHHHHHcCCHHHHHHHH--HcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CC-CCCCCCCCC
Confidence 455678899999999999999999999 667888877 899999999999999999999999998 88 999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCCC--CCCCCchHHHHHHHhCcH
Q 007858 116 TAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNL--EPDDLENTFFVSIETGLY 193 (587)
Q Consensus 116 TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~--~~~~g~t~l~~a~~~~~~ 193 (587)
||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++++.....+. .+..+.++ ..
T Consensus 108 tpL~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~--------~~ 178 (299)
T 1s70_B 108 IPLHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI--------ML 178 (299)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHH--------HH
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhH--------HH
Confidence 9999999999999999999999996 8999999999999999999999999987654111 11111222 22
Q ss_pred HHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhh
Q 007858 194 GLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKD 273 (587)
Q Consensus 194 ~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~ 273 (587)
..+..++.. ........+..|.||||+|+..++ .+++++|++.|++++..+
T Consensus 179 ~~~~~~l~~-~~~~~~~~~~~g~t~L~~A~~~g~----------------------------~~~v~~Ll~~g~d~~~~d 229 (299)
T 1s70_B 179 RDARQWLNS-GHINDVRHAKSGGTALHVAAAKGY----------------------------TEVLKLLIQARYDVNIKD 229 (299)
T ss_dssp HHHHHHHHH-TCCCCCCCTTTCCCHHHHHHHHTC----------------------------HHHHHHHHTTTCCTTCCC
T ss_pred HHHHHHHhc-cCcchhhhcCCCCCHHHHHHHCCc----------------------------HHHHHHHHHcCCCCCCcC
Confidence 344556665 455555678899999999999997 999999999999887665
Q ss_pred hhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhc
Q 007858 274 VLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEM 337 (587)
Q Consensus 274 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 337 (587)
..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++. ..+.++.+++.
T Consensus 230 -----~~g~tpL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 230 -----YDGWTPLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp -----TTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred -----CCCCcHHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 4889999999999999999999999999 799999999999999764 34455555443
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.9e-35 Score=278.35 Aligned_cols=216 Identities=20% Similarity=0.231 Sum_probs=164.9
Q ss_pred CCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHH
Q 007858 53 GDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQF 132 (587)
Q Consensus 53 g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~ 132 (587)
|+.+++++|+ +.+.+++...|.+|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|+..|+.+++++
T Consensus 2 g~~~~i~~Ll--~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 2 DAPAVISDFI--YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS--AD-ANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ---CCEETTE--ETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHH--HcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcC--CC-CCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 5666777777 5566666555677788888888888888888888777 66 77777778888888888888888888
Q ss_pred HHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccc
Q 007858 133 MLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATH 212 (587)
Q Consensus 133 Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d 212 (587)
|+++++...+..+..|.||||+|+..|+.+++++|++.++ .++.+|
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------------~~~~~~ 122 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA----------------------------------DVNAVD 122 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC----------------------------------CTTCBC
T ss_pred HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC----------------------------------CCcCcC
Confidence 8877763347777777788888887777777777777665 344455
Q ss_pred cCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcC
Q 007858 213 AKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSG 292 (587)
Q Consensus 213 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g 292 (587)
..|.||||+|+..++ .+++++|+++|.+++..+ ..|.||||+|+..|
T Consensus 123 ~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~~~~~~~-----~~g~t~L~~A~~~~ 169 (223)
T 2f8y_A 123 DLGKSALHWAAAVNN----------------------------VDAAVVLLKNGANKDMQN-----NREETPLFLAAREG 169 (223)
T ss_dssp TTSCBHHHHHHHTTC----------------------------HHHHHHHHHTTCCTTCCC-----TTCCCHHHHHHHHT
T ss_pred CCCCcHHHHHHHcCC----------------------------HHHHHHHHHcCCCCCCcC-----CCCcCHHHHHHHcC
Confidence 666666666666665 666777776666665443 36788888899999
Q ss_pred cHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcch
Q 007858 293 NFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDK 341 (587)
Q Consensus 293 ~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~ 341 (587)
+.+++++|++++++ ++.+|..|+||||+|+.+++.+++++|+++|+..
T Consensus 170 ~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 170 SYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVR 217 (223)
T ss_dssp CHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSS
T ss_pred CHHHHHHHHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCc
Confidence 99999999999999 6899999999999999999999999999999864
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-36 Score=306.49 Aligned_cols=258 Identities=11% Similarity=0.027 Sum_probs=191.9
Q ss_pred cCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCcccc-----------------CCCCC
Q 007858 52 KGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSL-----------------QDENG 114 (587)
Q Consensus 52 ~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~-----------------~d~~g 114 (587)
....+++++|+ +.+.+++.. +..|.|+++ |+.++|+.|+++| .+ .+. +....
T Consensus 29 ~~~~dlv~~ll--~~ga~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~g--~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 97 (327)
T 1sw6_A 29 TFTHDLTSDFL--SSPLKIMKA-LPSPVVNDN-----EQKMKLEAFLQRL--LF-PEIQEMPTSLNNDSSNRNSEGGSSN 97 (327)
T ss_dssp ECCTTCCCSTT--TSSCCCEEC-BCCCCCCCH-----HHHHHHHHHHHHH--HC--------------------------
T ss_pred hhcCchHHHHh--hCCcccccC-CCCCCcccC-----chhHHHHHHHHhc--cC-CccccchHhhhcccccccccccCCc
Confidence 34456677777 678888777 788888877 8888888888887 33 222 11112
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCccccc-CCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCc
Q 007858 115 NTAFCFAAAVGSVEIAQFMLQRNPNLLTI-RGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGL 192 (587)
Q Consensus 115 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~ 192 (587)
.+.+|.|+..+..+++++|++.|+++ +. +|.+|.||||+|+..|+.+++++|+++++ ++..+.+|.||||.|+..|+
T Consensus 98 ~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~ 176 (327)
T 1sw6_A 98 QQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVN 176 (327)
T ss_dssp ------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSH
T ss_pred cchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcc
Confidence 23357777777788888888888886 66 78888888888888888888888888888 77888888888888888887
Q ss_pred ---HHHHHHHHHhcccccccccccCCchHHHHHhh----CCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHH
Q 007858 193 ---YGLALQLLKKNKKLLAGATHAKYGTAMHMLAR----NPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKE 265 (587)
Q Consensus 193 ---~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~ 265 (587)
.+.++.|++. ....++.+|..|+||||+|+. .++ .++++.|++.
T Consensus 177 ~~~~~~~~~ll~~-~~~~~~~~d~~g~tpLh~A~~~~~~~g~----------------------------~~~v~~Ll~~ 227 (327)
T 1sw6_A 177 NYDSGTFEALLDY-LYPCLILEDSMNRTILHHIIITSGMTGC----------------------------SAAAKYYLDI 227 (327)
T ss_dssp HHHTTCHHHHHHH-HGGGGGEECTTCCCHHHHHHHHHTSTTC----------------------------HHHHHHHHHH
T ss_pred cccHHHHHHHHHh-hhccccCCCCCCCCHHHHHHHHcccccc----------------------------HHHHHHHHHH
Confidence 6778888887 446778888899999999987 665 7888888887
Q ss_pred hhccc---------------hhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhH
Q 007858 266 ISKST---------------HKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADT 330 (587)
Q Consensus 266 ~~~~~---------------~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i 330 (587)
+.... ..+.+..+..|.||||.|+. +++|+++ + ++.+|.+|+||||+|+.+|+.++
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~ 298 (327)
T 1sw6_A 228 LMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISI 298 (327)
T ss_dssp HHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHH
T ss_pred HHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHH
Confidence 43211 11222334588999999986 8999998 4 67899999999999999999999
Q ss_pred HHHHHhcCcchhhhhhhccCCCCcHHHHHHHcC
Q 007858 331 FKLIYEMGFDKELIATYVDVSGNNLLHLAAQYS 363 (587)
Q Consensus 331 v~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~ 363 (587)
+++|+++|++++ .+|.+|+||||+|++.|
T Consensus 299 v~~Ll~~Gad~~----~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 299 VDALLDYGADPF----IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHHHTTCCTT----CCCTTSCCGGGGTCC--
T ss_pred HHHHHHcCCCCc----ccCCCCCCHHHHHHhcC
Confidence 999999999976 79999999999998764
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.7e-34 Score=273.79 Aligned_cols=229 Identities=14% Similarity=0.143 Sum_probs=206.8
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
..+..+.|+||.|+..|+.++++.|+ +.+.+++.. +..|.||||+|+..|+.+++++|++.+ .+.....+..|.|
T Consensus 4 ~~d~~~~~~l~~A~~~g~~~~~~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t 78 (240)
T 3eu9_A 4 HIDDYSTWDIVKATQYGIYERCRELV--EAGYDVRQP-DKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGDLNST 78 (240)
T ss_dssp CCSCGGGCCHHHHHHTTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTTTTBC
T ss_pred ccccccchHHHHHHHcCChHHHHHHH--HcCCCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCCcCCC
Confidence 35678899999999999999999999 677888877 899999999999999999999999998 6623445566999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCc-HH
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGL-YG 194 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~-~~ 194 (587)
|||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+.+|.||||.|+..+. .+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 999999999999999999999995 8899999999999999999999999999998 88899999999999997766 78
Q ss_pred HHHHHHHhccccccccccc-CCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhh
Q 007858 195 LALQLLKKNKKLLAGATHA-KYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKD 273 (587)
Q Consensus 195 ~v~~Ll~~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~ 273 (587)
+++.|++. +...+..+. .|.||||+|+..++ .+++++|+++|++++..+
T Consensus 158 ~~~~L~~~--~~~~~~~~~~~g~t~L~~A~~~~~----------------------------~~~v~~Ll~~g~~~~~~~ 207 (240)
T 3eu9_A 158 PTRLLLTF--NVSVNLGDKYHKNTALHWAVLAGN----------------------------TTVISLLLEAGANVDAQN 207 (240)
T ss_dssp THHHHHHT--TCCTTCCCTTTCCCHHHHHHHHTC----------------------------HHHHHHHHHHTCCTTCBC
T ss_pred HHHHHHhc--CCCcchhhccCCCcHHHHHHHcCC----------------------------HHHHHHHHHcCCCCCCcC
Confidence 88888887 788887886 89999999999997 999999999999887665
Q ss_pred hhhhccCCChHHHHHHHcCcHHHHHHHHHhCCC
Q 007858 274 VLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPD 306 (587)
Q Consensus 274 ~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~ 306 (587)
..|.||||+|++.|+.+++++|++++++
T Consensus 208 -----~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 208 -----IKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp -----TTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred -----CCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 3789999999999999999999999877
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=1e-34 Score=287.04 Aligned_cols=226 Identities=11% Similarity=0.098 Sum_probs=200.1
Q ss_pred CHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhh
Q 007858 90 QTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYR 169 (587)
Q Consensus 90 ~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (587)
..++.++|.+. + ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+ +|.||||+|+..|+.+++++|++
T Consensus 12 ~~~v~~lL~~~----~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~Ll~ 83 (285)
T 3kea_A 12 SKQLKSFLSSK----D-TFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKILLF 83 (285)
T ss_dssp HHHHHHHHHST----T-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHHHH
T ss_pred HHHHHHHHHhC----C-CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHHHH
Confidence 34555555544 3 7899999999999999999999999999999996 655 49999999999999999999999
Q ss_pred cCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCC-chHHHHHhhCCCCcccCCCCCccccchhhhhc
Q 007858 170 QNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKY-GTAMHMLARNPSAFTSNCPGWLKVPGIKFITN 247 (587)
Q Consensus 170 ~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g-~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
+++ ++..+..|.||||.|+..|+.++++.|+++ +..++.+|..| .||||+|+..++
T Consensus 84 ~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~-------------------- 141 (285)
T 3kea_A 84 SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLND-------------------- 141 (285)
T ss_dssp TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTC--------------------
T ss_pred CCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCC--------------------
Confidence 999 888999999999999999999999999998 88899999999 899999999998
Q ss_pred cCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCch-HHHHHHcC
Q 007858 248 NTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSI-FHIAVMHR 326 (587)
Q Consensus 248 ~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~ 326 (587)
.+++++|++++.+.... ..|.||||.|+..|+.+++++|+++|++ ++.+|..|+|| ||+|+.+|
T Consensus 142 --------~~~v~~Ll~~g~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 142 --------VSIVSYFLSEIPSTFDL------AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp --------HHHHHHHHTTSCTTCCC------STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHT
T ss_pred --------HHHHHHHHhCCCccccc------cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcC
Confidence 99999999998766332 1569999999999999999999999999 79999999998 99999999
Q ss_pred ChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCC
Q 007858 327 HADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKV 371 (587)
Q Consensus 327 ~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l 371 (587)
+.+++++|+++|++++ .+| +.|+..++.++++.|
T Consensus 207 ~~~~v~~Ll~~gad~~----~~~-------~~a~~~~~~~iv~~L 240 (285)
T 3kea_A 207 DIEMLQALFKYDINIY----SAN-------LENVLLDDAEIAKMI 240 (285)
T ss_dssp CHHHHHHHTTSCBCST----TTT-------GGGGTTTCHHHHHHH
T ss_pred CHHHHHHHHHcCCCCC----CCC-------hhhhhcCCHHHHHHH
Confidence 9999999999999976 455 355667776655544
No 39
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=3.9e-34 Score=272.15 Aligned_cols=194 Identities=16% Similarity=0.145 Sum_probs=167.0
Q ss_pred CCCCCCcCCCC----cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHcc
Q 007858 26 ANSVQPLQNDK----KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELT 101 (587)
Q Consensus 26 ~~~~~~l~~~~----~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 101 (587)
+....+++.+. ..+..|+||||.|+..|+.++++.|+ +.+.+++.. +..|.||||+|+..|+.+++++|++.+
T Consensus 5 ~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 81 (223)
T 2f8y_A 5 AVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL--EASADANIQ-DNMGRTPLHAAVSADAQGVFQILIRNR 81 (223)
T ss_dssp CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHBT
T ss_pred HHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHH--HcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 33444555443 34678999999999999999999999 678888877 899999999999999999999999998
Q ss_pred CCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCC
Q 007858 102 GHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDL 180 (587)
Q Consensus 102 ~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g 180 (587)
..+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|
T Consensus 82 -~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 158 (223)
T 2f8y_A 82 -ATD-LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNRE 158 (223)
T ss_dssp -TSC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTC
T ss_pred -CCC-cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCC
Confidence 236 8899999999999999999999999999999996 8999999999999999999999999999988 77778888
Q ss_pred chHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 181 ENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 181 ~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
.||||.|+..++.++++.|+++ +..++.+|..|.||||+|+..++
T Consensus 159 ~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 159 ETPLFLAAREGSYETAKVLLDH--FANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred cCHHHHHHHcCCHHHHHHHHHc--CCCCccccccCCCHHHHHHHhcc
Confidence 8888888888888888888886 66666677777777777776665
No 40
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=6.9e-35 Score=280.01 Aligned_cols=224 Identities=15% Similarity=0.155 Sum_probs=185.4
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHHccCC--CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcH
Q 007858 74 VTKGYQTILHVATGAKQTNFVKQMVELTGH--DNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTP 151 (587)
Q Consensus 74 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~--~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp 151 (587)
.|.+|.||||+|+..|+.+++++|++.+.. .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF-LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCC-CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHH-hhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 378899999999999999999999887621 25 8889999999999999999999999999999985 8899999999
Q ss_pred HHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcc
Q 007858 152 LYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFT 230 (587)
Q Consensus 152 L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~ 230 (587)
||+|+..|+.+++++|++.++ .. .+...+..+..|.||||+|+..++
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~-----------------------------~~~~~~~~~~~g~t~L~~A~~~~~--- 129 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPH-----------------------------LHSILKATNYNGHTCLHLASIHGY--- 129 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTS-----------------------------SSCGGGCCCTTCCCHHHHHHHTTC---
T ss_pred HHHHHHcCCHHHHHHHHhcccchh-----------------------------HHHHhhccCCCCCCHHHHHHHcCC---
Confidence 999999999999999999875 11 123345677788888888888887
Q ss_pred cCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCcccc
Q 007858 231 SNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQ 310 (587)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~ 310 (587)
.+++++|++.|++++..+. ..|.||||+|+..|+.+++++|+++|++ ++.
T Consensus 130 -------------------------~~~v~~Ll~~g~~~~~~~~----~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~ 179 (236)
T 1ikn_D 130 -------------------------LGIVELLVSLGADVNAQEP----CNGRTALHLAVDLQNPDLVSLLLKCGAD-VNR 179 (236)
T ss_dssp -------------------------HHHHHHHHHHTCCTTCCCT----TTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCC
T ss_pred -------------------------HHHHHHHHHcCCCCCCCCC----CCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCc
Confidence 8888888888887775432 2679999999999999999999999999 799
Q ss_pred ccCCCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcC
Q 007858 311 LDENGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYS 363 (587)
Q Consensus 311 ~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~ 363 (587)
.|..|+||||+|+.+|+.+++++|+++|++.. ...++.+|.||.+.+....
T Consensus 180 ~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 180 VTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEESYDTESEFT 230 (236)
T ss_dssp CCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTTCCCCC----
T ss_pred ccCCCCCHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHHHHhhhcccc
Confidence 99999999999999999999999999999865 3468999999988776544
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.4e-32 Score=263.03 Aligned_cols=208 Identities=15% Similarity=0.100 Sum_probs=143.1
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHc-cCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCccc----ccCCCCCCcH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVEL-TGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLL----TIRGGGQMTP 151 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~----~~~~~~g~tp 151 (587)
.|+||||.|+..|+.++|++|++. + .+ ++.+|..|.||||+|+..|+.+++++|+++|+++. +.+|..|.||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g--~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEG--CE-VHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTC--SC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcC--CC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence 367777777777777777777776 4 66 67777777777777777777777777777776632 3455667777
Q ss_pred HHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcc
Q 007858 152 LYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFT 230 (587)
Q Consensus 152 L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~ 230 (587)
||+|+..|+.+++++|+++++ .+..+... . .....+..|..|.||||+|+..++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~--~--------------------~~~~~~~~~~~g~t~L~~A~~~~~--- 133 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGS--V--------------------FHYRPHNLIYYGEHPLSFAACVGS--- 133 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSG--G--------------------GSCCTTCSCCCCSSHHHHHHHHTC---
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCc--c--------------------eeecccccccCCCCHHHHHHHcCC---
Confidence 777777777777777777766 33322211 0 011223345566677777766665
Q ss_pred cCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHH----HHHHHhCCC
Q 007858 231 SNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFL----AVLTRSYPD 306 (587)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv----~~Ll~~~~~ 306 (587)
.+++++|+++|++++..+ ..|.||||+|+..|+.+++ ++|++++++
T Consensus 134 -------------------------~~~v~~Ll~~ga~~~~~d-----~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~ 183 (232)
T 2rfa_A 134 -------------------------EEIVRLLIEHGADIRAQD-----SLGNTVLHILILQPNKTFACQMYNLLLSYDGG 183 (232)
T ss_dssp -------------------------HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCS
T ss_pred -------------------------HHHHHHHHHCCCCCCCCC-----CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCc
Confidence 666777776666665543 3667777777777777766 888888877
Q ss_pred cc-----ccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 007858 307 LV-----HQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342 (587)
Q Consensus 307 ~~-----~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 342 (587)
.. +.+|..|+||||+|+.+|+.+++++|+++|.+..
T Consensus 184 ~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 184 DHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp CSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 32 5788999999999999999999999999987653
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=5e-32 Score=259.24 Aligned_cols=196 Identities=16% Similarity=0.117 Sum_probs=177.2
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCcc-----ccCCCCCC
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLL-----SLQDENGN 115 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll-----~~~d~~g~ 115 (587)
.|.||||.|+..|+.++++.|+ +..+.+++.. |.+|.||||+|+..|+.+++++|++.+ ++ + +.+|..|.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll-~~~g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~-~~~~~~~~~~~~g~ 76 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLL-KFEGCEVHQR-GAMGETALHIAALYDNLEAAMVLMEAA--PE-LVFEPMTSELYEGQ 76 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHH-TTTCSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHC--GG-GGGCCCCSTTTTTC
T ss_pred CCCCHHHHHHHcCCHHHHHHHH-HhcCCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--ch-hccccccccCCCCc
Confidence 4799999999999999999999 5558899887 999999999999999999999999998 55 3 66788999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCcccccCCC-------------CCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCc
Q 007858 116 TAFCFAAAVGSVEIAQFMLQRNPNLLTIRGG-------------GQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLE 181 (587)
Q Consensus 116 TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~-------------~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~ 181 (587)
||||+|+..|+.+++++|+++|+++ +..+. .|.||||+|+..|+.+++++|+++++ .+..|.+|.
T Consensus 77 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~ 155 (232)
T 2rfa_A 77 TALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGN 155 (232)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Confidence 9999999999999999999999996 66654 79999999999999999999999999 888999999
Q ss_pred hHHHHHHHhCcHHHH----HHHHHhcccccc------cccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCC
Q 007858 182 NTFFVSIETGLYGLA----LQLLKKNKKLLA------GATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDS 251 (587)
Q Consensus 182 t~l~~a~~~~~~~~v----~~Ll~~~~~~~~------~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (587)
||||+|+..++.+++ +.|++. +... +.+|..|.||||+|+..++
T Consensus 156 t~L~~A~~~~~~~~~~~i~~~Ll~~--g~~~~~~~~~~~~~~~g~tpl~~A~~~g~------------------------ 209 (232)
T 2rfa_A 156 TVLHILILQPNKTFACQMYNLLLSY--DGGDHLKSLELVPNNQGLTPFKLAGVEGN------------------------ 209 (232)
T ss_dssp CHHHHHHTCSCHHHHHHHHHHHHHT--TCSCSSCCGGGCCCTTSCCHHHHHHHHTC------------------------
T ss_pred CHHHHHHHcCChHHHHHHHHHHHhc--CCchhhhhhhccCCCCCCCHHHHHHHcCC------------------------
Confidence 999999999999988 888887 5544 5789999999999999998
Q ss_pred chHHHHHHHHHHHHhhccchh
Q 007858 252 STQALELVKCLWKEISKSTHK 272 (587)
Q Consensus 252 ~~~~~~~v~~Ll~~~~~~~~~ 272 (587)
.+++++|++++......
T Consensus 210 ----~~~v~~Ll~~g~~~~~~ 226 (232)
T 2rfa_A 210 ----IVMFQHLMQKRKHIAAA 226 (232)
T ss_dssp ----HHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHHhcCccchhh
Confidence 99999999999876543
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=6.6e-32 Score=252.32 Aligned_cols=196 Identities=17% Similarity=0.160 Sum_probs=111.4
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAA 156 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 156 (587)
.+.||||.|+..|+.+.++.|++.+ +.+ ++.+|..|.||||+|++.|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~ll~~~-~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 4 YEVGALLEAANQRDTKKVKEILQDT-TYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYAG 80 (201)
T ss_dssp CCTTHHHHHHHTTCHHHHHHHHTCT-TCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred ccccHHHHHHHhccHHHHHHHHHcC-CCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 3445555555555555555555444 123 4444455555555555555555555555555543 444445555555555
Q ss_pred HhCChHHHHHHhhcCC--CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCC
Q 007858 157 LFGQSKMASFLYRQNE--DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCP 234 (587)
Q Consensus 157 ~~g~~~~v~~Ll~~~~--~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 234 (587)
..|+.+++++|++.+. .+..+..|.||||.|+..++.++++.|+++ .+..++.+|..|.||||+|+..++.
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~~~~------ 153 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-GREDIDFQNDFGYTALIEAVGLREG------ 153 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHH-CCCCTTCCCTTSCCHHHHHHHSSCC------
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCcCCCCCCCCCHHHHHHHhccc------
Confidence 5555555555543322 222333333333333333333333333333 1245555666666666666655420
Q ss_pred CCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCC
Q 007858 235 GWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDEN 314 (587)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~ 314 (587)
..++.+++++|+++|++ ++.+|..
T Consensus 154 -------------------------------------------------------~~~~~~~v~~Ll~~ga~-~~~~~~~ 177 (201)
T 3hra_A 154 -------------------------------------------------------NQLYQDIVKLLMENGAD-QSIKDNS 177 (201)
T ss_dssp -------------------------------------------------------SHHHHHHHHHHHHTTCC-TTCCCTT
T ss_pred -------------------------------------------------------hhhHHHHHHHHHHCCCC-CCccCCC
Confidence 01238899999999999 6899999
Q ss_pred CCchHHHHHHcCChhHHHHHHhcC
Q 007858 315 GRSIFHIAVMHRHADTFKLIYEMG 338 (587)
Q Consensus 315 g~t~Lh~A~~~~~~~iv~~Ll~~g 338 (587)
|+||||+|+.+|+.+++++|+++|
T Consensus 178 g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 178 GRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred CCCHHHHHHHcCCHhHHHHHHhcC
Confidence 999999999999999999999876
No 44
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.98 E-value=5.3e-33 Score=280.29 Aligned_cols=248 Identities=15% Similarity=0.046 Sum_probs=189.3
Q ss_pred CCCCCCcCCCC---cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhh----------------cCCCCCcHHHHHH
Q 007858 26 ANSVQPLQNDK---KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAA----------------VTKGYQTILHVAT 86 (587)
Q Consensus 26 ~~~~~~l~~~~---~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~----------------~~~~g~t~Lh~A~ 86 (587)
+....+++.+. ..+..|.|+++ |+.++++.|+ +.+.+.+.. ......+.+|.|+
T Consensus 33 dlv~~ll~~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll--~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~ 105 (327)
T 1sw6_A 33 DLTSDFLSSPLKIMKALPSPVVNDN-----EQKMKLEAFL--QRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSF 105 (327)
T ss_dssp TCCCSTTTSSCCCEECBCCCCCCCH-----HHHHHHHHHH--HHHHC-------------------------------CH
T ss_pred chHHHHhhCCcccccCCCCCCcccC-----chhHHHHHHH--HhccCCccccchHhhhcccccccccccCCccchhHHHH
Confidence 33444556654 34578899887 9999999999 445443320 0111223458888
Q ss_pred hcCCHHHHHHHHHccCCCCcccc-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCC---hH
Q 007858 87 GAKQTNFVKQMVELTGHDNLLSL-QDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQ---SK 162 (587)
Q Consensus 87 ~~g~~~iv~~Ll~~~~~~~ll~~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~---~~ 162 (587)
..+..++++.|++.+ .+ ++. +|..|.||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+ .+
T Consensus 106 ~~~~~~~~~~l~~~g--~d-vn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~~~~~ 181 (327)
T 1sw6_A 106 DSLLQEVNDAFPNTQ--LN-LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYDSG 181 (327)
T ss_dssp HHHHHHHHHHCTTSC--CC-SCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHHTT
T ss_pred HhhHHHHHHHHHhcC--CC-cccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhcccccHH
Confidence 888899999999998 88 899 8999999999999999999999999999996 8999999999999999998 78
Q ss_pred HHHHHhhcCC--CCCCCCCCchHHHHHHH----hCcHHHHHHHHHhcc------------------cccccccccCCchH
Q 007858 163 MASFLYRQNE--DNLEPDDLENTFFVSIE----TGLYGLALQLLKKNK------------------KLLAGATHAKYGTA 218 (587)
Q Consensus 163 ~v~~Ll~~~~--~~~~~~~g~t~l~~a~~----~~~~~~v~~Ll~~~~------------------~~~~~~~d~~g~t~ 218 (587)
+++.|++.+. .+..+.+|.||||+|+. .|+.++++.|++... +..++.++..|.||
T Consensus 182 ~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~ 261 (327)
T 1sw6_A 182 TFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDS 261 (327)
T ss_dssp CHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CH
T ss_pred HHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCCh
Confidence 8888888873 77799999999999999 899999999998621 67778889999999
Q ss_pred HHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHH
Q 007858 219 MHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLA 298 (587)
Q Consensus 219 Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~ 298 (587)
||.|+. +++|++++ ++.. +..|.||||+|++.|+.++++
T Consensus 262 L~~a~~----------------------------------~~~Ll~~~--~n~~-----d~~G~TpLh~A~~~g~~~~v~ 300 (327)
T 1sw6_A 262 ILENLD----------------------------------LKWIIANM--LNAQ-----DSNGDTCLNIAARLGNISIVD 300 (327)
T ss_dssp HHHHCS----------------------------------HHHHHHHT--TTCC-----CTTSCCHHHHHHHHCCHHHHH
T ss_pred hHHHHH----------------------------------HHHHHHhC--CCCC-----CCCCCCHHHHHHHcCCHHHHH
Confidence 999852 56777763 3333 347899999999999999999
Q ss_pred HHHHhCCCccccccCCCCchHHHHHHcC
Q 007858 299 VLTRSYPDLVHQLDENGRSIFHIAVMHR 326 (587)
Q Consensus 299 ~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~ 326 (587)
+|+++|++ ++.+|.+|+||||+|+++|
T Consensus 301 ~Ll~~Gad-~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 301 ALLDYGAD-PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHTTCC-TTCCCTTSCCGGGGTCC--
T ss_pred HHHHcCCC-CcccCCCCCCHHHHHHhcC
Confidence 99999999 7999999999999998764
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.8e-31 Score=248.06 Aligned_cols=193 Identities=19% Similarity=0.178 Sum_probs=177.5
Q ss_pred cCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHH
Q 007858 39 YSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAF 118 (587)
Q Consensus 39 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpL 118 (587)
...+.||||.|+..|+.+.++.++ +..+.+++.. |.+|.||||+|+..|+.++|++|++.| ++ ++.+|..|.|||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~l 76 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEIL-QDTTYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDRG--AD-INLQNSISDSPY 76 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHH-TCTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHH
T ss_pred CcccccHHHHHHHhccHHHHHHHH-HcCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCCCCCCCCCHH
Confidence 356899999999999999999999 6666688877 899999999999999999999999999 88 999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcC-C-CCCCCCCCchHHHHHHHhCc----
Q 007858 119 CFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQN-E-DNLEPDDLENTFFVSIETGL---- 192 (587)
Q Consensus 119 h~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~-~~~~~~~g~t~l~~a~~~~~---- 192 (587)
|+|+..|+.+++++|++.+...++.+|..|.||||+|+..|+.+++++|++.+ . .+..+..|.||||.|+..+.
T Consensus 77 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~ 156 (201)
T 3hra_A 77 LYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL 156 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH
T ss_pred HHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh
Confidence 99999999999999995544335899999999999999999999999999999 4 78899999999999999887
Q ss_pred -HHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHh
Q 007858 193 -YGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEI 266 (587)
Q Consensus 193 -~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~ 266 (587)
.++++.|+++ +..++.+|..|.||||+|+..++ .+++++|+++|
T Consensus 157 ~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~----------------------------~~~~~~Ll~~G 201 (201)
T 3hra_A 157 YQDIVKLLMEN--GADQSIKDNSGRTAMDYANQKGY----------------------------TEISKILAQYN 201 (201)
T ss_dssp HHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHTCC
T ss_pred HHHHHHHHHHC--CCCCCccCCCCCCHHHHHHHcCC----------------------------HhHHHHHHhcC
Confidence 9999999998 89999999999999999999997 89999998754
No 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.8e-32 Score=263.18 Aligned_cols=184 Identities=16% Similarity=0.128 Sum_probs=148.4
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCc---cchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCC
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQ---SMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDEN 113 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~---~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~ 113 (587)
..+.+|.||||.|+..|+.++++.|+ +... .+++.. +..|.||||+|+..|+.++|++|++.| ++ ++.+|..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~ 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVI-RQVKGDLAFLNFQ-NNLQQTPLHLAVITNQPEIAEALLGAG--CD-PELRDFR 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCC-C-----CCCCCCC-CTTCCCHHHHHHHTTCHHHHHCCCSCC--CC-SCCCCTT
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHH-HHhhccHHHhhcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCCcCCC
Confidence 45788999999999999999999999 4322 257766 889999999999999999999999998 88 9999999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCc-----ccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCC-CCchHHHH
Q 007858 114 GNTAFCFAAAVGSVEIAQFMLQRNPN-----LLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPD-DLENTFFV 186 (587)
Q Consensus 114 g~TpLh~Aa~~g~~~iv~~Ll~~~~~-----l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~-~g~t~l~~ 186 (587)
|.||||+|+..|+.+++++|++.+++ ..+..|..|.||||+|+..|+.+++++|+++++ .+..+. .|.||||+
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~ 157 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHH
Confidence 99999999999999999999999864 236788899999999999999999999999987 555555 67777777
Q ss_pred HHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 187 SIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 187 a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
|+..|+.+++++|+++ ++.++.+|..|.||||+|+..++
T Consensus 158 A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~ 196 (236)
T 1ikn_D 158 AVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPS 196 (236)
T ss_dssp HHHTTCHHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSC
T ss_pred HHHcCCHHHHHHHHHc--CCCCCcccCCCCCHHHHHHccCc
Confidence 7777777777777665 56666666666666665555443
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=4.9e-31 Score=256.39 Aligned_cols=196 Identities=13% Similarity=0.113 Sum_probs=173.8
Q ss_pred CCChHhHHHHHcCCHHHH----HHHHhhcCccchhh---hcCCCCCcHHHHHHhc---CCHHHHHHHHHccCCCCccc--
Q 007858 41 HKCVPLYKAALKGDCNEA----KRILGDDHQSMLRA---AVTKGYQTILHVATGA---KQTNFVKQMVELTGHDNLLS-- 108 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v----~~Ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~ll~-- 108 (587)
.|+||||.|+..|+.+.+ ++++ +.+.+++. ..|.+|.||||+|+.. |+.++|++|++.+ ++ ++
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~--~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~-~~~~ 75 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLR--WNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID--KD-SGNP 75 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHH--HHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HH-TTCS
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHH--HcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC--Cc-ccch
Confidence 478999999999999855 4444 56778886 2389999999999999 9999999999998 44 33
Q ss_pred ---------cCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCC-------------CCcHHHHHHHhCChHHHHH
Q 007858 109 ---------LQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGG-------------QMTPLYIAALFGQSKMASF 166 (587)
Q Consensus 109 ---------~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~-------------g~tpL~~A~~~g~~~~v~~ 166 (587)
.+|..|.||||+|+..|+.+++++|+++|+++ +.+|.. |.||||+|+..|+.+++++
T Consensus 76 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~ 154 (256)
T 2etb_A 76 KPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTY 154 (256)
T ss_dssp SCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 24578999999999999999999999999996 777776 9999999999999999999
Q ss_pred Hhh---cCC-CCCCCCCCchHHHHHHH--hCcHH-------HHHHHHHhcccccc-------cccccCCchHHHHHhhCC
Q 007858 167 LYR---QNE-DNLEPDDLENTFFVSIE--TGLYG-------LALQLLKKNKKLLA-------GATHAKYGTAMHMLARNP 226 (587)
Q Consensus 167 Ll~---~~~-~~~~~~~g~t~l~~a~~--~~~~~-------~v~~Ll~~~~~~~~-------~~~d~~g~t~Lh~a~~~~ 226 (587)
|++ .++ .+..|.+|.||||+|+. .++.+ +++.|++. ++.+ +.+|..|.||||+|+..+
T Consensus 155 Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~--ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 232 (256)
T 2etb_A 155 LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM--GARLCPTVQLEEISNHQGLTPLKLAAKEG 232 (256)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHHHSTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc--CCCcccccccccccCCCCCCHHHHHHHhC
Confidence 999 787 88899999999999999 78888 99999998 7877 889999999999999999
Q ss_pred CCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchh
Q 007858 227 SAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHK 272 (587)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~ 272 (587)
+ .+++++|+++|.+....
T Consensus 233 ~----------------------------~~~v~~Ll~~g~~~~~~ 250 (256)
T 2etb_A 233 K----------------------------IEIFRHILQREFSGAAA 250 (256)
T ss_dssp C----------------------------HHHHHHHHHHHHHHHHH
T ss_pred C----------------------------HHHHHHHHhCCCCCCCc
Confidence 8 99999999999876543
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.6e-31 Score=255.99 Aligned_cols=201 Identities=15% Similarity=0.072 Sum_probs=165.1
Q ss_pred CCCcHHHHHHhcCCHH----HHHHHHHccCCCCcccc----CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCcccc---
Q 007858 77 GYQTILHVATGAKQTN----FVKQMVELTGHDNLLSL----QDENGNTAFCFAAAV---GSVEIAQFMLQRNPNLLT--- 142 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~----iv~~Ll~~~~~~~ll~~----~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~l~~--- 142 (587)
.|+||||.|+..|+.+ ++++|++.+ .+ ++. +|..|.||||+|+.. |+.+++++|++.|++...
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~-i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 77 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS--KY-LTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKP 77 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CC-TTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSC
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcC--CC-cccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhh
Confidence 3789999999999997 667777788 78 887 899999999999999 999999999999887521
Q ss_pred -------cCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCC-------------CchHHHHHHHhCcHHHHHHHHH
Q 007858 143 -------IRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDD-------------LENTFFVSIETGLYGLALQLLK 201 (587)
Q Consensus 143 -------~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~-------------g~t~l~~a~~~~~~~~v~~Ll~ 201 (587)
.+|..|.||||+|+..|+.+++++|+++++ .+..+.. |.||||.|+..|+.+++++|++
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 234779999999999999999999999998 7777765 9999999999999999999999
Q ss_pred ---hcccccccccccCCchHHHHHhh--CCCCcccCCCCCccccchhhhhccCCCchHHHH-------HHHHHHHHhhcc
Q 007858 202 ---KNKKLLAGATHAKYGTAMHMLAR--NPSAFTSNCPGWLKVPGIKFITNNTDSSTQALE-------LVKCLWKEISKS 269 (587)
Q Consensus 202 ---~~~~~~~~~~d~~g~t~Lh~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~v~~Ll~~~~~~ 269 (587)
. +.+++.+|.+|+||||+|+. .++ .+ ++++|+++|+++
T Consensus 158 ~~~~--ga~~n~~d~~g~TpLh~A~~~~~~~----------------------------~~~~~~~~~iv~~Ll~~ga~~ 207 (256)
T 2etb_A 158 NPHQ--PASLEATDSLGNTVLHALVMIADNS----------------------------PENSALVIHMYDGLLQMGARL 207 (256)
T ss_dssp CSSC--CCCTTCCCTTSCCHHHHHHHHCCSC----------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred cccc--CCCcCccCCCCCCHHHHHHHcccCC----------------------------chhhHHHHHHHHHHHHcCCCc
Confidence 7 88999999999999999998 543 34 455555554443
Q ss_pred chhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 007858 270 THKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342 (587)
Q Consensus 270 ~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 342 (587)
+... +..+.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus 208 ~~~~--------------------------------~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 208 CPTV--------------------------------QLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248 (256)
T ss_dssp STTC--------------------------------CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cccc--------------------------------ccccccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC
Confidence 2110 0016778888888888888888888888888877654
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=9.8e-31 Score=256.87 Aligned_cols=202 Identities=14% Similarity=0.128 Sum_probs=171.5
Q ss_pred CcccCCCChHhHHHHHcCCHHHHHHHHhh---cCccchh---hhcCCCCCcHHHHHHhc---CCHHHHHHHHHccCCCCc
Q 007858 36 KKQYSHKCVPLYKAALKGDCNEAKRILGD---DHQSMLR---AAVTKGYQTILHVATGA---KQTNFVKQMVELTGHDNL 106 (587)
Q Consensus 36 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~---~~~~~~~---~~~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~l 106 (587)
...+..|.||||.|+..|+.++|+.|+ + +.+.+++ ...+..|.||||+|+.. |+.++|++|++.+ ++.
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g--a~~ 83 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLL-PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA--RKT 83 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHH-HHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH--HHT
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHH-HHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh--ccc
Confidence 346788999999999999999999998 4 2444443 23378999999999987 9999999999997 320
Q ss_pred ----------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCC--------------CCCcHHHHHHHhCChH
Q 007858 107 ----------LSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGG--------------GQMTPLYIAALFGQSK 162 (587)
Q Consensus 107 ----------l~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~--------------~g~tpL~~A~~~g~~~ 162 (587)
...+|..|.||||+|+..|+.++|++|+++|+++ +.++. .|.||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 2236779999999999999999999999999996 77776 7999999999999999
Q ss_pred HHHHHhh---cCC-CCCCCCCCchHHHHHHHhCc---------HHHHHHHHHhccccccc-------ccccCCchHHHHH
Q 007858 163 MASFLYR---QNE-DNLEPDDLENTFFVSIETGL---------YGLALQLLKKNKKLLAG-------ATHAKYGTAMHML 222 (587)
Q Consensus 163 ~v~~Ll~---~~~-~~~~~~~g~t~l~~a~~~~~---------~~~v~~Ll~~~~~~~~~-------~~d~~g~t~Lh~a 222 (587)
++++|++ .++ .+..|.+|.||||+|+..++ .++++.|++. +..++ .+|..|.||||+|
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL--GAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh--hhhcccccccccccCCCCCCHHHHH
Confidence 9999999 777 88899999999999999888 7999999998 77765 5899999999999
Q ss_pred hhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhh-ccch
Q 007858 223 ARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEIS-KSTH 271 (587)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~-~~~~ 271 (587)
+..++ .+++++|+++|+ ++..
T Consensus 241 ~~~g~----------------------------~~iv~~Ll~~ga~dp~~ 262 (273)
T 2pnn_A 241 ASSGK----------------------------IGVLAYILQREIHEPEC 262 (273)
T ss_dssp HHTTC----------------------------HHHHHHHHHHHTC----
T ss_pred HHhCh----------------------------HHHHHHHHHCCCCCchh
Confidence 99998 999999999998 4443
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.8e-30 Score=232.51 Aligned_cols=157 Identities=20% Similarity=0.263 Sum_probs=147.1
Q ss_pred hHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHH
Q 007858 44 VPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAA 123 (587)
Q Consensus 44 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~ 123 (587)
++|+.||+.|+.++|+.|+ +.+++++.+ |.+|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|++
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll--~~Gadvn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad-~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLI--ENGADVNAS-DSDGRTPLHHAAENGHKEVVKLLISKG--AD-VNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHH--HCCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhcc--cc-hhhhccCCCCHHHHHHH
Confidence 4699999999999999999 789999988 999999999999999999999999999 88 99999999999999999
Q ss_pred cCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 124 VGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 124 ~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
.|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.++ ++..|.+|.||||+|+..|+.++++.|+++
T Consensus 80 ~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 158 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ 158 (169)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred cCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 99999999999999996 9999999999999999999999999999999 888999999999999999999999999997
Q ss_pred ccccccc
Q 007858 203 NKKLLAG 209 (587)
Q Consensus 203 ~~~~~~~ 209 (587)
|+.++
T Consensus 159 --GA~ie 163 (169)
T 4gpm_A 159 --GGWLE 163 (169)
T ss_dssp -------
T ss_pred --CCCcC
Confidence 66543
No 51
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=8e-31 Score=257.49 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=171.8
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHcc--CCCCccc----cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCccc----
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELT--GHDNLLS----LQDENGNTAFCFAAAV---GSVEIAQFMLQRNPNLL---- 141 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~--~~~~ll~----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~l~---- 141 (587)
|..|.||||.|++.|+.++|+.|++.+ ...+ ++ .+|..|.||||+|+.. |+.+++++|++.|++..
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~ 88 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKR-LTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQ 88 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCC-TTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccc-cCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhH
Confidence 888999999999999999999888753 1244 33 4588999999999987 99999999999986521
Q ss_pred --c----cCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccC
Q 007858 142 --T----IRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAK 214 (587)
Q Consensus 142 --~----~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~ 214 (587)
+ .+|..|.||||+|+..|+.+++++|+++++ .+..+..+.. ........+..
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~~~ 147 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF---------------------KKTKGRPGFYF 147 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG---------------------SSCSSSCCCCS
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc---------------------ccccccccccC
Confidence 2 256789999999999999999999999887 5554443310 11223345668
Q ss_pred CchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHH---HhhccchhhhhhhccCCChHHHHHHHc
Q 007858 215 YGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWK---EISKSTHKDVLKLISKPSKLLFDAAHS 291 (587)
Q Consensus 215 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~~~g~t~Lh~Aa~~ 291 (587)
|.||||+|+..++ .+++++|++ .|.+++..+. .|.||||+|+..
T Consensus 148 g~tpL~~A~~~g~----------------------------~~~v~~Ll~~~~~gad~~~~d~-----~g~tpLh~A~~~ 194 (273)
T 2pnn_A 148 GELPLSLAACTNQ----------------------------LAIVKFLLQNSWQPADISARDS-----VGNTVLHALVEV 194 (273)
T ss_dssp CBSHHHHHHHTTC----------------------------HHHHHHHHHCSSCCCCTTCCCT-----TSCCHHHHHHHH
T ss_pred CCCHHHHHHHcCC----------------------------HHHHHHHHhcccCCCCceeeCC-----CCCcHHHHHHHc
Confidence 9999999999997 999999999 8888886654 889999999999
Q ss_pred Cc---------HHHHHHHHHhCCCccc-------cccCCCCchHHHHHHcCChhHHHHHHhcCc-chhhhhhhccCCCCc
Q 007858 292 GN---------FKFLAVLTRSYPDLVH-------QLDENGRSIFHIAVMHRHADTFKLIYEMGF-DKELIATYVDVSGNN 354 (587)
Q Consensus 292 g~---------~~iv~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~-~~~~~~~~~d~~G~T 354 (587)
|+ .+++++|+++|++ ++ .+|..|+||||+|+.+|+.+++++|+++|+ |+. .....+.+
T Consensus 195 ~~~~~~~~~~~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~----~~~~~~~~ 269 (273)
T 2pnn_A 195 ADNTVDNTKFVTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE----CRHAAAHH 269 (273)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC---------------
T ss_pred cCcchhHHHHHHHHHHHHHHhhhh-cccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch----hhhhhhhh
Confidence 88 8999999999988 44 589999999999999999999999999999 654 35555555
Q ss_pred HH
Q 007858 355 LL 356 (587)
Q Consensus 355 pL 356 (587)
|-
T Consensus 270 ~~ 271 (273)
T 2pnn_A 270 HH 271 (273)
T ss_dssp --
T ss_pred cc
Confidence 43
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=9.3e-30 Score=229.99 Aligned_cols=158 Identities=20% Similarity=0.246 Sum_probs=147.6
Q ss_pred cHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhC
Q 007858 80 TILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFG 159 (587)
Q Consensus 80 t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g 159 (587)
++|+.||+.|+.++|+.|++.| ++ ++.+|.+|.||||+|+..++.+++++|+++|+++ +.+|.+|.||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G--ad-vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG--AD-VNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCC--CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence 4799999999999999999999 99 9999999999999999999999999999999996 999999999999999999
Q ss_pred ChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCcc
Q 007858 160 QSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLK 238 (587)
Q Consensus 160 ~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 238 (587)
+.+++++|+++++ ++..|.+|.||||+|+..|+.++++.|++. +++++.+|.+|+||||+|+..++
T Consensus 82 ~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~g~----------- 148 (169)
T 4gpm_A 82 HKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREHGN----------- 148 (169)
T ss_dssp CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC-----------
T ss_pred CHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCC-----------
Confidence 9999999999999 889999999999999999999999999998 89999999999999999999998
Q ss_pred ccchhhhhccCCCchHHHHHHHHHHHHhhccch
Q 007858 239 VPGIKFITNNTDSSTQALELVKCLWKEISKSTH 271 (587)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~ 271 (587)
.+++++|+++|++++.
T Consensus 149 -----------------~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 149 -----------------EEVVKLLEKQGGWLEH 164 (169)
T ss_dssp -----------------HHHHHHHHTC------
T ss_pred -----------------HHHHHHHHHCCCCcCC
Confidence 9999999999998864
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=4.1e-30 Score=250.43 Aligned_cols=200 Identities=12% Similarity=0.106 Sum_probs=174.1
Q ss_pred cCCCChHhHHHHHcCCHHHHHHHHhh---cCccchhhh---cCCCCCcHHHHHH---hcCCHHHHHHHHHccCC------
Q 007858 39 YSHKCVPLYKAALKGDCNEAKRILGD---DHQSMLRAA---VTKGYQTILHVAT---GAKQTNFVKQMVELTGH------ 103 (587)
Q Consensus 39 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~---~~~~~~~~~---~~~~g~t~Lh~A~---~~g~~~iv~~Ll~~~~~------ 103 (587)
+..++++||.|++.|+.+.++.|+ + +.+.+++.. .+..|.||||+|+ +.|+.++|++|++.+..
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll-~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLL-SFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHH-HHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHH-HHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHh
Confidence 456899999999999999777776 3 356666644 1377999999999 77999999999998711
Q ss_pred ---CCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCC--------------CCCCcHHHHHHHhCChHHHHH
Q 007858 104 ---DNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRG--------------GGQMTPLYIAALFGQSKMASF 166 (587)
Q Consensus 104 ---~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~--------------~~g~tpL~~A~~~g~~~~v~~ 166 (587)
.+ .+..|..|.||||+|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++
T Consensus 81 ~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 81 FINSP-FRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHTCC-BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhccc-ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 23 4556679999999999999999999999999996 7777 689999999999999999999
Q ss_pred Hhh---cCC-CCCCCCCCchHHHHHHHhCc---------HHHHHHHHHhcccccc-------cccccCCchHHHHHhhCC
Q 007858 167 LYR---QNE-DNLEPDDLENTFFVSIETGL---------YGLALQLLKKNKKLLA-------GATHAKYGTAMHMLARNP 226 (587)
Q Consensus 167 Ll~---~~~-~~~~~~~g~t~l~~a~~~~~---------~~~v~~Ll~~~~~~~~-------~~~d~~g~t~Lh~a~~~~ 226 (587)
|++ .++ .+..|.+|.||||.|+..++ .++++.|+++ ++.+ +.+|..|.||||+|+..|
T Consensus 159 Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 159 LTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK--CAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp HHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH--HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh--CcccccccchhhcccCCCCCHHHHHHHcC
Confidence 999 777 88899999999999998877 6999999998 7777 679999999999999999
Q ss_pred CCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccch
Q 007858 227 SAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTH 271 (587)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~ 271 (587)
+ .+++++|+++|.+...
T Consensus 237 ~----------------------------~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 237 K----------------------------IGIFQHIIRREIADAA 253 (260)
T ss_dssp C----------------------------HHHHHHHHHHHHHHHC
T ss_pred C----------------------------HHHHHHHHHhCCCccc
Confidence 8 9999999999986654
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=2.7e-30 Score=251.79 Aligned_cols=210 Identities=13% Similarity=0.077 Sum_probs=164.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHH----ccCCCCccccCC----CCCCcHHHHHH---HcCCHHHHHHHHhcCCcc---
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVE----LTGHDNLLSLQD----ENGNTAFCFAA---AVGSVEIAQFMLQRNPNL--- 140 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~----~~~~~~ll~~~d----~~g~TpLh~Aa---~~g~~~iv~~Ll~~~~~l--- 140 (587)
+..|.|+||.|++.|+.+.|+.|++ .+ .+ ++..+ ..|.||||+|+ +.|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~--~~-~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~ 78 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK--KR-LTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM 78 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CC-TTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC--CC-cchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence 5678999999999999995555544 77 66 66544 77999999999 779999999999987542
Q ss_pred -------cccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccc
Q 007858 141 -------LTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATH 212 (587)
Q Consensus 141 -------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d 212 (587)
....|..|.||||+|+..|+.+++++|+++++ .+..+..+.. .+......+
T Consensus 79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~---------------------~~~~~~~~~ 137 (260)
T 3jxi_A 79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFF---------------------QPKDEGGYF 137 (260)
T ss_dssp HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCC---------------------SSSCCCCSC
T ss_pred HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccccccc---------------------Ccccccccc
Confidence 13445588899999999999999999998887 4443321100 122223344
Q ss_pred cCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHH---HhhccchhhhhhhccCCChHHHHHH
Q 007858 213 AKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWK---EISKSTHKDVLKLISKPSKLLFDAA 289 (587)
Q Consensus 213 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~---~~~~~~~~~~~~~~~~g~t~Lh~Aa 289 (587)
..|.||||+|+..++ .+++++|++ .|++++..+. .|.||||+|+
T Consensus 138 ~~g~tpL~~A~~~g~----------------------------~~~v~~Ll~~~~~ga~~~~~d~-----~g~TpLh~A~ 184 (260)
T 3jxi_A 138 YFGELPLSLAACTNQ----------------------------PHIVHYLTENGHKQADLRRQDS-----RGNTVLHALV 184 (260)
T ss_dssp CSCSSHHHHHHHTTC----------------------------HHHHHHHHHCSSCCCCTTCCCT-----TSCCHHHHHH
T ss_pred cCCCCHHHHHHHcCC----------------------------HHHHHHHHhccccCCCCcccCC-----CCCcHHHHHH
Confidence 679999999999887 899999999 8888876553 7899999999
Q ss_pred HcCc---------HHHHHHHHHhCCCcc-------ccccCCCCchHHHHHHcCChhHHHHHHhcCcchh
Q 007858 290 HSGN---------FKFLAVLTRSYPDLV-------HQLDENGRSIFHIAVMHRHADTFKLIYEMGFDKE 342 (587)
Q Consensus 290 ~~g~---------~~iv~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 342 (587)
..|+ .+++++|+++|++ + +..|.+|+||||+|+.+|+.+++++|+++|.+..
T Consensus 185 ~~~~~~~~~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 185 AIADNTRENTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp HHCCSSHHHHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCchhHHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 8777 7899999999887 4 6789999999999999999999999999987754
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.96 E-value=1.7e-31 Score=272.15 Aligned_cols=264 Identities=11% Similarity=0.046 Sum_probs=163.9
Q ss_pred ChHhHHHHH-cCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHH
Q 007858 43 CVPLYKAAL-KGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFA 121 (587)
Q Consensus 43 ~t~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~A 121 (587)
.++++.|.. .++.+.+++++ +. +.++.||||.|++.|+.++|++|++.+.+....+..|..|.||||+|
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~--~~--------g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAH--KK--------GIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHH--HH--------TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHH--Hc--------CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence 445566555 45666666666 21 33456888888888888888888887722211234455677888888
Q ss_pred HHcCCHHHHHHHHhcCCcc--cccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCC--CCCCCchHHHHHH-HhCcHHH
Q 007858 122 AAVGSVEIAQFMLQRNPNL--LTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNL--EPDDLENTFFVSI-ETGLYGL 195 (587)
Q Consensus 122 a~~g~~~iv~~Ll~~~~~l--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~--~~~~g~t~l~~a~-~~~~~~~ 195 (587)
++.|+.++|++|+++|++. .+..+.+ .||||+|+..|+.+++++|+++++ .+. .+.+|.||||.|+ ..|+.++
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ei 214 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNV 214 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHH
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHH
Confidence 8888888888888888641 1222233 788888888888888888888877 443 6677788888888 8888888
Q ss_pred HHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhh
Q 007858 196 ALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVL 275 (587)
Q Consensus 196 v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~ 275 (587)
+++|++. ++ .|.||||+|+..|+ .+++++|+++|++++..+
T Consensus 215 v~~Ll~~--ga-------~~~taL~~Aa~~g~----------------------------~evv~lL~~~ga~~~~~~-- 255 (376)
T 2aja_A 215 INFLLDC--PV-------MLAYAEIHEFEYGE----------------------------KYVNPFIARHVNRLKEMH-- 255 (376)
T ss_dssp HHHHTTS--HH-------HHHHHHHCTTTTTT----------------------------TTHHHHHHHHHHHHHHHH--
T ss_pred HHHHHhC--CC-------ccchHHHHHHHCCC----------------------------HHHHHHHHhcCccccccc--
Confidence 8888876 32 27788888888876 678888888877665432
Q ss_pred hhccCCChHHHHHHHcC---------------------------cHHHHHHHHHhCCCc----cccccCCCCchHHHHHH
Q 007858 276 KLISKPSKLLFDAAHSG---------------------------NFKFLAVLTRSYPDL----VHQLDENGRSIFHIAVM 324 (587)
Q Consensus 276 ~~~~~g~t~Lh~Aa~~g---------------------------~~~iv~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~ 324 (587)
++++.|+..| ..+.+++|++....- .......+.||||+|+.
T Consensus 256 -------~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~ 328 (376)
T 2aja_A 256 -------DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR 328 (376)
T ss_dssp -------TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHH
T ss_pred -------HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHH
Confidence 1222333333 345555555432100 01223457799999999
Q ss_pred cCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCC
Q 007858 325 HRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSNPKPISK 370 (587)
Q Consensus 325 ~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~ 370 (587)
.|+.+++++|++.|. .+|..|+|++.+|-..|..++.+.
T Consensus 329 ~g~~e~v~lLl~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 329 LGNQGACALLLSIPS-------VLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp HTCTTHHHHHTTSHH-------HHHSCC------------------
T ss_pred cCcHHHHHHHHcChH-------HHHHHHHhccccccccccccHHHH
Confidence 999999999998763 378899999999999998776544
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=1.7e-28 Score=223.13 Aligned_cols=169 Identities=15% Similarity=0.153 Sum_probs=150.7
Q ss_pred CChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHH
Q 007858 42 KCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFA 121 (587)
Q Consensus 42 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~A 121 (587)
+.||||.|+..|+.+.++.++ +..+..++.. +..|.||||+|+..|+.++|++|++.+ ++ ++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHL-RKGDNLVNKP-DERGFTPLIWASAFGEIETVRFLLEWG--AD-PHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHH-TTCSGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT--CC-TTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHH-HcCcccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-chhhcccCCCHHHHH
Confidence 468999999999999999999 5555556766 899999999999999999999999999 88 999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 007858 122 AAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLL 200 (587)
Q Consensus 122 a~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll 200 (587)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+.+|.||||+|+..++.++++.|+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHH
Confidence 9999999999999999996 8999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HhcccccccccccCCchH
Q 007858 201 KKNKKLLAGATHAKYGTA 218 (587)
Q Consensus 201 ~~~~~~~~~~~d~~g~t~ 218 (587)
++ +.....++..|.||
T Consensus 156 ~~--~~~~~~~~~~~~~p 171 (172)
T 3v30_A 156 NH--ILKLFQSNLVPADP 171 (172)
T ss_dssp HH--HHHHSCC-------
T ss_pred HH--HHHHhcccCCCCCC
Confidence 98 77777778778776
No 57
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1.6e-27 Score=220.85 Aligned_cols=147 Identities=24% Similarity=0.203 Sum_probs=103.7
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
|..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 32 d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 32 DSYNRTPLMVACMLGMENAIDKLVENF--DK-LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLMW 107 (192)
T ss_dssp CTTCCCHHHHHHHHTCGGGHHHHHHHH--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHhc--cc-cccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence 666777777777777777777777766 56 6666677777777777777777777777777664 6666677777777
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
|+..|+.+++++|+++++ .+..+.+|.||||.|+..++.+++++|++. +..++.+|..|.||||+|+..++
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~ 179 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GADISARDLTGLTAEASARIFGR 179 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCTTSCBHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhCc
Confidence 777777777777777766 666666777777777777777777777765 66666677777777777777765
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.3e-27 Score=216.25 Aligned_cols=155 Identities=15% Similarity=0.169 Sum_probs=147.9
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHH
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCF 120 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~ 120 (587)
.|.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll--~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRI--EQENVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQNG--AD-PQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHH--HHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHH--HcCCCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHcC--CC-CCCcCCCCCcHHHH
Confidence 5789999999999999999999 556778877 899999999999999999999999998 88 89999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHH
Q 007858 121 AAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQL 199 (587)
Q Consensus 121 Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~L 199 (587)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+.+|.||++.|+..|+.++++.|
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 154 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHH
Confidence 99999999999999999996 8999999999999999999999999999998 888999999999999999999999999
Q ss_pred HHh
Q 007858 200 LKK 202 (587)
Q Consensus 200 l~~ 202 (587)
+++
T Consensus 155 ~~~ 157 (167)
T 3v31_A 155 ESH 157 (167)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=1e-27 Score=222.15 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=151.3
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
..+..|+||||.|+..|+.++++.|+ +.+.+++.. +..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.|
T Consensus 30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll--~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t 103 (192)
T 2rfm_A 30 YRDSYNRTPLMVACMLGMENAIDKLV--ENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKG--SN-VNTKDFSGKT 103 (192)
T ss_dssp CCCTTCCCHHHHHHHHTCGGGHHHHH--HHHCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHT--CC-TTCCCTTSCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHH--Hhccccccc-cccCccHHHHHHHcCCHHHHHHHHHCC--CC-CCCCCCCCCc
Confidence 46788999999999999999999999 567788877 889999999999999999999999999 88 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHH
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGL 195 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~ 195 (587)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||++.|+..++.++
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~ 182 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEV 182 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHH
Confidence 999999999999999999999996 8999999999999999999999999999998 88899999999999999999999
Q ss_pred HHHHHHh
Q 007858 196 ALQLLKK 202 (587)
Q Consensus 196 v~~Ll~~ 202 (587)
+++|++.
T Consensus 183 v~~Ll~~ 189 (192)
T 2rfm_A 183 IKIFTEV 189 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999987
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=2.8e-28 Score=239.51 Aligned_cols=191 Identities=15% Similarity=0.124 Sum_probs=174.1
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcC-ccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCC-CccccCCCCCCcHH
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDH-QSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHD-NLLSLQDENGNTAF 118 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~-~ll~~~d~~g~TpL 118 (587)
...+++|.|+..|+.+.++.++ +.. ...++.. |.+|.||||+|+..|+.++|++|++.| + + ++.+|..|.|||
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~-~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~g--~~~-~~~~~~~g~tpL 149 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMS-ARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDSG--VCK-VDKQNRAGYSPI 149 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHC-HHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTS--CCC-TTCCCTTSCCHH
T ss_pred HhccCCCHHHHHHHHHHHHHHH-HHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHCC--CCc-CCCCCCCCCCHH
Confidence 3467789999999999999998 321 2236666 999999999999999999999999998 6 7 899999999999
Q ss_pred HHHH-----HcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCc
Q 007858 119 CFAA-----AVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGL 192 (587)
Q Consensus 119 h~Aa-----~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~ 192 (587)
|+|+ ..++.+++++|++.|.+. +..|..|.||||+|+..|+.+++++|++.++ ++..|.+|.||||+|+..|+
T Consensus 150 ~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~ 228 (276)
T 4hbd_A 150 MLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGH 228 (276)
T ss_dssp HHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCC
Confidence 9999 678999999999999874 8889999999999999999999999999999 88899999999999999999
Q ss_pred HHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHh
Q 007858 193 YGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEI 266 (587)
Q Consensus 193 ~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~ 266 (587)
.++++.|++. .+.+++.+|..|.||||+|+..++ .+++++|+++.
T Consensus 229 ~~iv~~Ll~~-~gad~~~~d~~g~TpL~~A~~~g~----------------------------~~iv~~Ll~~~ 273 (276)
T 4hbd_A 229 KEIAGLLLAV-PSCDISLTDRDGSTALMVALDAGQ----------------------------SEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHHTS-TTCCTTCCCTTSCCHHHHHHHHTC----------------------------HHHHHHHHHHC
T ss_pred HHHHHHHHhc-CCCCCcCcCCCCCCHHHHHHHcCC----------------------------HHHHHHHHhcc
Confidence 9999999995 489999999999999999999998 89999999874
No 61
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=4.8e-30 Score=261.43 Aligned_cols=280 Identities=10% Similarity=0.035 Sum_probs=202.7
Q ss_pred HcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHh-cCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHH
Q 007858 51 LKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATG-AKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEI 129 (587)
Q Consensus 51 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~-~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~i 129 (587)
..+..+.+..++ ....+++. ..+.++++.|.. .++.++++++++.+ .+ ++||||+|++.|+.++
T Consensus 43 ~~~~~~~~~~~~--~~~~~~~~---~~~ll~~~~a~~~~~~~~~~~~l~~~g--~~--------~~T~Lh~Aa~~G~~e~ 107 (376)
T 2aja_A 43 TLSYKEAIHIFL--PGTKNMEQ---VRQLLCLYYAHYNRNAKQLWSDAHKKG--IK--------SEVICFVAAITGCSSA 107 (376)
T ss_dssp HSCHHHHHHHCC--CCSSHHHH---HHHHHHHHHHHTTTTCTTHHHHHHHHT--CC--------HHHHHHHHHHHCCHHH
T ss_pred hccHHHHHHHHh--cCCCCHHH---HHHHHHHHHHHhcCCCHHHHHHHHHcC--CC--------cCCHHHHHHHcCCHHH
Confidence 345566666666 33344432 235678998887 57899999999987 44 3499999999999999
Q ss_pred HHHHHhcCCcc--cccCCCCCCcHHHHHHHhCChHHHHHHhhcCC----CCCCCCCCchHHHHHHHhCcHHHHHHHHHhc
Q 007858 130 AQFMLQRNPNL--LTIRGGGQMTPLYIAALFGQSKMASFLYRQNE----DNLEPDDLENTFFVSIETGLYGLALQLLKKN 203 (587)
Q Consensus 130 v~~Ll~~~~~l--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~ 203 (587)
|++|+++|+.. ....|..|.||||+|+..|+.+++++|+++++ .+..+.+ .||||.|+..|+.+++++|+++
T Consensus 108 v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~- 185 (376)
T 2aja_A 108 LDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL- 185 (376)
T ss_dssp HHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS-
T ss_pred HHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc-
Confidence 99999998731 12345678899999999999999999999995 2334444 9999999999999999999998
Q ss_pred ccccccc--cccCCchHHHHHh-hCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccC
Q 007858 204 KKLLAGA--THAKYGTAMHMLA-RNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISK 280 (587)
Q Consensus 204 ~~~~~~~--~d~~g~t~Lh~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~ 280 (587)
+...+. .|..|.||||+|+ ..|+ .+++++|++.|..
T Consensus 186 -ga~~~~~~~d~~g~TpL~~Aa~~~G~----------------------------~eiv~~Ll~~ga~------------ 224 (376)
T 2aja_A 186 -APTEATAMIQAENYYAFRWAAVGRGH----------------------------HNVINFLLDCPVM------------ 224 (376)
T ss_dssp -CGGGHHHHHHHHHHHHHHHHHSTTCC----------------------------HHHHHHHTTSHHH------------
T ss_pred -CCccchhccCCCCCCHHHHHHHHCCC----------------------------HHHHHHHHhCCCc------------
Confidence 777666 8889999999999 9998 9999999987642
Q ss_pred CChHHHHHHHcCcHHHHHHHHHhCCCccccccCCCCchHHHHHHcCChhH------------HHHHHhcCcch-------
Q 007858 281 PSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDENGRSIFHIAVMHRHADT------------FKLIYEMGFDK------- 341 (587)
Q Consensus 281 g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~i------------v~~Ll~~g~~~------- 341 (587)
|.||||.|+.+|+.+++++|++++++ ++..| ++++.|+.+|+.++ ++.|++.+...
T Consensus 225 ~~taL~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~ 299 (376)
T 2aja_A 225 LAYAEIHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRF 299 (376)
T ss_dssp HHHHHHCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHH
T ss_pred cchHHHHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHH
Confidence 48999999999999999999999887 44443 36677777776653 23444443211
Q ss_pred -------hhhh--hhccCCCCcHHHHHHHcCCCCCCCCCCCchHHHHHHhhhHHHHHHhcccccccccCCCCCCchhhhH
Q 007858 342 -------ELIA--TYVDVSGNNLLHLAAQYSNPKPISKVPGAALEMQQELKTFKEVETIVKPSFKEMKNNDGKTPWELFT 412 (587)
Q Consensus 342 -------~~~~--~~~d~~G~TpLhlA~~~~~~~~~~~l~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~g~t~l~~a~ 412 (587)
..+. ...++.++||||+|+..|+.++++.| +.. ...++..|+|+++++.
T Consensus 300 Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lL-------------------l~~---~~v~~~~~~~~~~~~~ 357 (376)
T 2aja_A 300 LLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALL-------------------LSI---PSVLALTKANNYYINE 357 (376)
T ss_dssp HHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHH-------------------TTS---HHHHHSCC--------
T ss_pred HHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHH-------------------HcC---hHHHHHHHHhcccccc
Confidence 0000 12446788999999999998877665 222 3667889999998886
Q ss_pred Hhh
Q 007858 413 DEH 415 (587)
Q Consensus 413 ~~~ 415 (587)
.+.
T Consensus 358 ~~~ 360 (376)
T 2aja_A 358 TGG 360 (376)
T ss_dssp ---
T ss_pred ccc
Confidence 543
No 62
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=7.3e-30 Score=243.36 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=137.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
+.+|.||||.|+..|+.++|++|++.+ ++ ++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+
T Consensus 18 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~ 93 (229)
T 2vge_A 18 RLNPLVLLLDAALTGELEVVQQAVKEM--ND-PSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHC 93 (229)
T ss_dssp TSCHHHHHHHHHHHTCHHHHHHHHHHS--SC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred ccchhHHHHHHHHcCCHHHHHHHHhcC--CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHH
Confidence 455677788888888888888888877 67 7778888888888888888888888888888875 7778888888888
Q ss_pred HHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccc-cCCchHHHHHhhCCCCcccCC
Q 007858 155 AALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATH-AKYGTAMHMLARNPSAFTSNC 233 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d-~~g~t~Lh~a~~~~~~~~~~~ 233 (587)
|+..|+.+++++|++.++ .++.++ ..|.||||+|+.
T Consensus 94 A~~~g~~~~v~~Ll~~ga----------------------------------~~~~~~~~~g~tpL~~A~a--------- 130 (229)
T 2vge_A 94 AASCNDTVICMALVQHGA----------------------------------AIFATTLSDGATAFEKCDP--------- 130 (229)
T ss_dssp HHHTTCHHHHHHHHTTTC----------------------------------CTTCCCSSTTCCTGGGCCT---------
T ss_pred HHHcCCHHHHHHHHHcCC----------------------------------CcccccCCCCCCHHHHHHH---------
Confidence 888888888888877765 222332 456666665510
Q ss_pred CCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhCCCccccccC
Q 007858 234 PGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSYPDLVHQLDE 313 (587)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~~~~~~~~d~ 313 (587)
+..|+.+++++|+++|++ ++..|.
T Consensus 131 -------------------------------------------------------~~~~~~~~v~~Ll~~ga~-~~~~~~ 154 (229)
T 2vge_A 131 -------------------------------------------------------YREGYADCATYLADVEQS-MGLMNS 154 (229)
T ss_dssp -------------------------------------------------------TSTTHHHHHHHHHHHHHH-TTTSGG
T ss_pred -------------------------------------------------------HhcChHHHHHHHHHcCCC-cccccC
Confidence 334456666666666666 566777
Q ss_pred CCCchHHHHHHcCChhHHHHHHhcCcchhhhhhhccCCCCcHHHHHHHcCCCCCCCCC
Q 007858 314 NGRSIFHIAVMHRHADTFKLIYEMGFDKELIATYVDVSGNNLLHLAAQYSNPKPISKV 371 (587)
Q Consensus 314 ~g~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~~~~d~~G~TpLhlA~~~~~~~~~~~l 371 (587)
.|.||+|.++..+. .++|++.|++++ ++.+|.+|+||||+|+..|+.++++..
T Consensus 155 ~~~~~l~~~~~~~~---~~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 155 GAVYALWDYSAEFG---DELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp GEEEESSCBCCSST---TBCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred CchHHHHHHhhccc---cccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehh
Confidence 77888876544433 356788888865 567899999999999999998877654
No 63
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=2.8e-27 Score=215.03 Aligned_cols=164 Identities=16% Similarity=0.175 Sum_probs=151.8
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAAL 157 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 157 (587)
+.||||.|+..|+.+++++|++.+ .+.++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC--SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC--cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence 578999999999999999999998 5548899999999999999999999999999999996 8999999999999999
Q ss_pred hCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCC
Q 007858 158 FGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGW 236 (587)
Q Consensus 158 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 236 (587)
.|+.+++++|+++++ .+..+.+|.||||.|+..++.++++.|++. +..++.+|..|.||||+|+..++
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~--------- 147 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR--GADLTTEADSGYTPMDLAVALGY--------- 147 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTC---------
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHhCc---------
Confidence 999999999999998 888999999999999999999999999998 88899999999999999999997
Q ss_pred ccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhh
Q 007858 237 LKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDV 274 (587)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~ 274 (587)
.+++++|++++.+....+.
T Consensus 148 -------------------~~~~~~L~~~~~~~~~~~~ 166 (172)
T 3v30_A 148 -------------------RKVQQVIENHILKLFQSNL 166 (172)
T ss_dssp -------------------HHHHHHHHHHHHHHSCC--
T ss_pred -------------------HHHHHHHHHHHHHHhcccC
Confidence 9999999999987765543
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=2.9e-27 Score=212.59 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=146.0
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHH
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCF 120 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~ 120 (587)
...||||.|+..|+.++++.|+ +.+.+++.. +..|.||||+|+. |+.+++++|++.+ .+ ++.+|..|.||||+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll--~~~~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLL--QNNVNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLRG--AN-PDLKDRTGFAVIHD 76 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHT--TSCCCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHTT--CC-TTCCCTTSCCHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHH--hCCCCcccc-CccCccHHHHHHc-CcHHHHHHHHHcC--CC-CCCCCCCCCCHHHH
Confidence 4579999999999999999999 678888877 8999999999999 9999999999998 88 99999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC--CCCCCCCCchHHHHHHHhCcHHHHHH
Q 007858 121 AAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE--DNLEPDDLENTFFVSIETGLYGLALQ 198 (587)
Q Consensus 121 Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~l~~a~~~~~~~~v~~ 198 (587)
|++.|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..++.+++++
T Consensus 77 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence 99999999999999999996 8999999999999999999999999999998 47899999999999999999999999
Q ss_pred HHHh
Q 007858 199 LLKK 202 (587)
Q Consensus 199 Ll~~ 202 (587)
|+++
T Consensus 156 Ll~~ 159 (162)
T 1ihb_A 156 MQAN 159 (162)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 9997
No 65
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3.8e-27 Score=213.55 Aligned_cols=158 Identities=24% Similarity=0.282 Sum_probs=148.0
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
....+.++|+.|+..|+.+++++|+ +.+.+++.. |..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~ 83 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILM--ANGADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKNG--AD-VNAVDHAGMTP 83 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHH--HCCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCccCCCCCCH
Confidence 4556789999999999999999999 678888877 899999999999999999999999998 88 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHH
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLA 196 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v 196 (587)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||++.|+..++.+++
T Consensus 84 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~ 162 (169)
T 2y1l_E 84 LRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLA 162 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence 99999999999999999999996 8999999999999999999999999999998 888999999999999999999999
Q ss_pred HHHHHh
Q 007858 197 LQLLKK 202 (587)
Q Consensus 197 ~~Ll~~ 202 (587)
++|++.
T Consensus 163 ~~L~~~ 168 (169)
T 2y1l_E 163 EILQKL 168 (169)
T ss_dssp HHHHTC
T ss_pred HHHHHc
Confidence 999875
No 66
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=5.1e-27 Score=212.25 Aligned_cols=160 Identities=15% Similarity=0.156 Sum_probs=152.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAA 156 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 156 (587)
.|.||||.|+..|+.+++++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE--NV-INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS--SC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC--CC-cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 5899999999999999999999998 88 9999999999999999999999999999999995 889999999999999
Q ss_pred HhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCCC
Q 007858 157 LFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPG 235 (587)
Q Consensus 157 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 235 (587)
..|+.+++++|+++++ .+..+.+|.||||.|+..++.++++.|+++ +..++.+|..|.||||+|+..++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~-------- 147 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLAVALGY-------- 147 (167)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTC--------
T ss_pred HcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCc--------
Confidence 9999999999999998 888999999999999999999999999997 88889999999999999999997
Q ss_pred CccccchhhhhccCCCchHHHHHHHHHHHHhhccc
Q 007858 236 WLKVPGIKFITNNTDSSTQALELVKCLWKEISKST 270 (587)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~ 270 (587)
.+++++|++++.+..
T Consensus 148 --------------------~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 148 --------------------RSVQQVIESHLLKLL 162 (167)
T ss_dssp --------------------HHHHHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHHHHHHHH
Confidence 999999999887653
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=6.4e-28 Score=236.96 Aligned_cols=193 Identities=16% Similarity=0.205 Sum_probs=147.4
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAA 156 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 156 (587)
.+.+++|.|+..|+.+.++.+++.+.... ++.+|.+|+||||+|+..|+.+++++|++.|+..++..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~-~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYV-VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHH-HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhc-CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence 45778888888888888888877652222 67788888888888888888888888888887224888888888888888
Q ss_pred -----HhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCccc
Q 007858 157 -----LFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTS 231 (587)
Q Consensus 157 -----~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~ 231 (587)
..++.+++++|++.+. .....|..|.||||+|+..++
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~----------------------------------~~~~~~~~g~tpLh~A~~~g~---- 195 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGN----------------------------------INAKASQAGQTALMLAVSHGR---- 195 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSC----------------------------------TTCCCTTTCCCHHHHHHHTTC----
T ss_pred HHHhhhhhhHHHHHHHHHcCC----------------------------------CccccCCCCCCHHHHHHHcCC----
Confidence 4455555555555543 444556667777777777665
Q ss_pred CCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHH-hCCCcccc
Q 007858 232 NCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTR-SYPDLVHQ 310 (587)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~-~~~~~~~~ 310 (587)
.+++++|++.|++++..+ ..|.||||+|+..|+.+++++|++ .+++ ++.
T Consensus 196 ------------------------~~~v~~Ll~~gad~n~~d-----~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~ 245 (276)
T 4hbd_A 196 ------------------------VDVVKALLACEADVNVQD-----DDGSTALMCACEHGHKEIAGLLLAVPSCD-ISL 245 (276)
T ss_dssp ------------------------HHHHHHHHHTTCCTTCCC-----TTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTC
T ss_pred ------------------------HHHHHHHHhCCCCCCCCC-----CCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcC
Confidence 677777777777666544 367888888888888999999998 7888 688
Q ss_pred ccCCCCchHHHHHHcCChhHHHHHHhcC
Q 007858 311 LDENGRSIFHIAVMHRHADTFKLIYEMG 338 (587)
Q Consensus 311 ~d~~g~t~Lh~A~~~~~~~iv~~Ll~~g 338 (587)
+|.+|+||||+|+.+|+.+++++|++++
T Consensus 246 ~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 246 TDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999999999998875
No 68
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=3.7e-27 Score=215.78 Aligned_cols=168 Identities=16% Similarity=0.111 Sum_probs=153.4
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHH
Q 007858 40 SHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFC 119 (587)
Q Consensus 40 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh 119 (587)
.++.++||.|+..|+.+.++.|+ +..+.+++.. +..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWL-DNTENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMRG--AR-INVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHH-HCTTSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHH-hcCccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHcC--CC-CCCcCCCCCCHHH
Confidence 45688999999999999999999 7667888877 899999999999999999999999998 88 9999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHH
Q 007858 120 FAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQ 198 (587)
Q Consensus 120 ~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~ 198 (587)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+.+|.||++.|+..++.++++.
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRER 156 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHH
Confidence 999999999999999999996 9999999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHhcccccccccccCC
Q 007858 199 LLKKNKKLLAGATHAKY 215 (587)
Q Consensus 199 Ll~~~~~~~~~~~d~~g 215 (587)
|++. +..++..+..+
T Consensus 157 L~~~--g~~~~~~~~~~ 171 (179)
T 3f6q_A 157 AEKM--GQNLNRIPYKD 171 (179)
T ss_dssp HHHT--TCCCSCBCCCC
T ss_pred HHHh--hcCcccCCccc
Confidence 9998 76666555443
No 69
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=6.8e-27 Score=208.81 Aligned_cols=153 Identities=19% Similarity=0.219 Sum_probs=144.0
Q ss_pred CChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHH
Q 007858 42 KCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFA 121 (587)
Q Consensus 42 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~A 121 (587)
+.|+||.|+..|+.+.++.|+ +..+.+++.. +..|.||||+ +..|+.+++++|++.| ++ ++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLL-HRELVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQG--AS-PNVQDTSGTSPVHDA 75 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH-HTTCCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHH-HhhCcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHCC--CC-CCCcCCCCCCHHHHH
Confidence 468999999999999999999 5555577776 8999999999 9999999999999998 88 999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHH
Q 007858 122 AAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLL 200 (587)
Q Consensus 122 a~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll 200 (587)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++. + .+..+.+|.||||.|+..|+.++++.|+
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999996 99999999999999999999999999999 6 8889999999999999999999999998
Q ss_pred Hh
Q 007858 201 KK 202 (587)
Q Consensus 201 ~~ 202 (587)
++
T Consensus 154 ~~ 155 (156)
T 1bd8_A 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 70
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=6.4e-27 Score=210.35 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=146.7
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHH
Q 007858 76 KGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIA 155 (587)
Q Consensus 76 ~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A 155 (587)
....||||.|+..|+.+++++|++.+ .+ ++.+|..|.||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~--~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNN--VN-VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA 77 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSC--CC-TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCC--CC-ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 34679999999999999999999998 88 89999999999999999 9999999999999996 89999999999999
Q ss_pred HHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCCC
Q 007858 156 ALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCP 234 (587)
Q Consensus 156 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 234 (587)
+..|+.+++++|+++++ .+..+.+|.||||.|+..++.+++++|+++ .....+.+|..|.||||+|+..++
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~~g~t~l~~A~~~~~------- 149 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH-TASNVGHRNHKGDTACDLARLYGR------- 149 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-SCCCTTCCCTTSCCHHHHHHHTTC-------
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-cCCCCCCcCCCCCcHHHHHHHcCC-------
Confidence 99999999999999998 888999999999999999999999999998 333468899999999999999998
Q ss_pred CCccccchhhhhccCCCchHHHHHHHHHHHHhhc
Q 007858 235 GWLKVPGIKFITNNTDSSTQALELVKCLWKEISK 268 (587)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~ 268 (587)
.+++++|+++|++
T Consensus 150 ---------------------~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 150 ---------------------NEVVSLMQANGAG 162 (162)
T ss_dssp ---------------------HHHHHHHHHTC--
T ss_pred ---------------------HHHHHHHHHhCCC
Confidence 8999999998864
No 71
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.7e-27 Score=213.65 Aligned_cols=158 Identities=19% Similarity=0.225 Sum_probs=146.1
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
.+.++.|+||.|+..|+.+.++.|+ +..+.+++.. +..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll-~~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~ 78 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLC-TVQSVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQHG--AD-VHAKDKGGLVP 78 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHC-CTTTTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHH-HcCCCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhcC--CC-CCccCCCCCCH
Confidence 3567899999999999999999999 6566666665 788999999999999999999999998 88 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHH
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLA 196 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v 196 (587)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+.+|.||+|+|.. ++.+++
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~ 156 (165)
T 3twr_A 79 LHNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQ 156 (165)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHH
T ss_pred HHHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHH
Confidence 99999999999999999999996 8999999999999999999999999999998 88899999999999877 888999
Q ss_pred HHHHHh
Q 007858 197 LQLLKK 202 (587)
Q Consensus 197 ~~Ll~~ 202 (587)
++|+++
T Consensus 157 ~~L~~~ 162 (165)
T 3twr_A 157 DLLRGD 162 (165)
T ss_dssp HHHHTC
T ss_pred HHHhhc
Confidence 999876
No 72
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=2.5e-29 Score=239.63 Aligned_cols=129 Identities=18% Similarity=0.170 Sum_probs=118.0
Q ss_pred cccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc
Q 007858 37 KQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 37 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
..+..+.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.++|++|++.| ++ ++.+|..|.|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~g--a~-~n~~d~~g~t 89 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAV--KEMNDPSQP-NEEGITALHNAICGANYSIVDFLITAG--AN-VNSPDSHGWT 89 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHH--HHSSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHH--hcCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC--CC-CCCCCCCCCC
Confidence 45667889999999999999999999 567788877 999999999999999999999999999 88 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCC-CCCCcHHHHH--HHhCChHHHHHHhhcCC
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRG-GGQMTPLYIA--ALFGQSKMASFLYRQNE 172 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~-~~g~tpL~~A--~~~g~~~~v~~Ll~~~~ 172 (587)
|||+|+..|+.+++++|+++|+++ +.++ .+|.||||+| +..|+.+++++|++.++
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga 147 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQ 147 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCC
Confidence 999999999999999999999997 6664 7999999999 88888888888887764
No 73
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=1.1e-26 Score=206.84 Aligned_cols=150 Identities=17% Similarity=0.180 Sum_probs=139.9
Q ss_pred CChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHH
Q 007858 42 KCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFA 121 (587)
Q Consensus 42 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~A 121 (587)
..++||.|+..|+.++++.|+ +.+.+++ . +..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll--~~g~~~~-~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILM--ANGAPFT-T-DWLGTSPLHLAAQYGHFSTTEVLLRAG--VS-RDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHH--HHTCCCC-C-CTTCCCHHHHHHHHTCHHHHHHHHTTT--CC-TTCCCTTCCCHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHH--HcCCCCC-c-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCCCCCCCCCHHHHH
Confidence 358999999999999999999 4455554 3 788999999999999999999999998 88 899999999999999
Q ss_pred HHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHH
Q 007858 122 AAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQL 199 (587)
Q Consensus 122 a~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~L 199 (587)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+.+|.||++.|+..|+.+++++|
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999996 8999999999999999999999999999998 888999999999999999999999876
No 74
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=1.4e-26 Score=209.82 Aligned_cols=158 Identities=22% Similarity=0.242 Sum_probs=148.4
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
...+.|+||.|++.|+.++|++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANG--AD-VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCC--CC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 566789999999999999999999998 88 9999999999999999999999999999999996 8999999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCC
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNC 233 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 233 (587)
|+..|+.+++++|+++++ .+..+.+|.||||.|+..++.+++++|+++ +..++.+|..|.||||+|+..++
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~------ 158 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAFDISIDNGN------ 158 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC------
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHhCC------
Confidence 999999999999999998 888999999999999999999999999998 88889999999999999999997
Q ss_pred CCCccccchhhhhccCCCchHHHHHHHHHHHHh
Q 007858 234 PGWLKVPGIKFITNNTDSSTQALELVKCLWKEI 266 (587)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~ 266 (587)
.+++++|++.|
T Consensus 159 ----------------------~~~~~~L~~~G 169 (169)
T 2y1l_E 159 ----------------------EDLAEILQKLN 169 (169)
T ss_dssp ----------------------HHHHHHHHTC-
T ss_pred ----------------------HHHHHHHHHcC
Confidence 89999998754
No 75
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=2.3e-26 Score=207.50 Aligned_cols=159 Identities=17% Similarity=0.225 Sum_probs=146.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
|++|.||||.|++.|+.+++++|++.+ +.+ ++..+..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 81 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVN-CRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHN 81 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC-CCC-ccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHH
Confidence 677899999999999999999999976 356 8888999999999999999999999999999996 9999999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCC
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNC 233 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 233 (587)
|+..|+.+++++|+++++ .+..+.+|.||||.|+..++.+++++|+++ +..++.+|..|.||||+|+. ++
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~a~~-~~------ 152 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPLDLVKD-GD------ 152 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTGGGSCT-TC------
T ss_pred HHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChhHhHhc-CC------
Confidence 999999999999999999 888999999999999999999999999998 88999999999999999877 54
Q ss_pred CCCccccchhhhhccCCCchHHHHHHHHHHHHhh
Q 007858 234 PGWLKVPGIKFITNNTDSSTQALELVKCLWKEIS 267 (587)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~ 267 (587)
.+++++|+++|+
T Consensus 153 ----------------------~~i~~~L~~~gA 164 (165)
T 3twr_A 153 ----------------------TDIQDLLRGDAA 164 (165)
T ss_dssp ----------------------HHHHHHHHTC--
T ss_pred ----------------------hHHHHHHhhccc
Confidence 899999987664
No 76
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=9.8e-26 Score=200.63 Aligned_cols=143 Identities=18% Similarity=0.136 Sum_probs=135.7
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAAL 157 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 157 (587)
..||||.|++.|+.+++++|++.+ .+ ++ .|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g--~~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 76 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANG--AP-FT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAAS 76 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHT--CC-CC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcC--CC-CC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 468999999999999999999998 66 54 5889999999999999999999999999996 8999999999999999
Q ss_pred hCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 158 FGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 158 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
.|+.+++++|+++++ .+..+.+|.||||.|+..++.+++++|+++ +..++.+|..|.||||+|+..++
T Consensus 77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHcCC
Confidence 999999999999998 888999999999999999999999999998 88899999999999999999997
No 77
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=3.7e-26 Score=209.15 Aligned_cols=166 Identities=14% Similarity=0.124 Sum_probs=151.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
++++.++||.|+..|+.++|++|++.+ +.+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 78 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNT-END-LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHL 78 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCT-TSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcC-ccc-ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 356789999999999999999999996 356 8999999999999999999999999999999996 8999999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCCCcccCC
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNC 233 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 233 (587)
|+..|+.+++++|+++++ .+..+.+|.||||.|+..++.++++.|+++ +..++.+|..|.||||+|+..++
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~------ 150 (179)
T 3f6q_A 79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN--GALVSICNKYGEMPVDKAKAPLR------ 150 (179)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCSSBCCTTSCCGGGGSCHHHH------
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCcchhccCCCCcHHHHHHHHH------
Confidence 999999999999999999 888999999999999999999999999998 89999999999999999998775
Q ss_pred CCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhh
Q 007858 234 PGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKD 273 (587)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~ 273 (587)
.++++.|++.|.+++...
T Consensus 151 ----------------------~~~~~~L~~~g~~~~~~~ 168 (179)
T 3f6q_A 151 ----------------------ELLRERAEKMGQNLNRIP 168 (179)
T ss_dssp ----------------------HHHHHHHHHTTCCCSCBC
T ss_pred ----------------------HHHHHHHHHhhcCcccCC
Confidence 889999999998887544
No 78
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=1.2e-26 Score=222.85 Aligned_cols=179 Identities=16% Similarity=0.103 Sum_probs=131.8
Q ss_pred cCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHH
Q 007858 39 YSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAF 118 (587)
Q Consensus 39 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpL 118 (587)
+..|.||||.|+..|+.+.++.|+ +++.+++. ++.|.||||.|+..|+.++|++|++.+ ++ ++.+|..|.|||
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll--~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~d~~g~t~L 74 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERI--AHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEV--DD-PSLPNDEGITAL 74 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT--SS-CCCCCTTSCCHH
T ss_pred CccccccCchhhhhhhHHHHHHHh--ccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcC--CC-CCCcCCCCCCHH
Confidence 356899999999999999999999 77888874 578999999999999999999999998 78 999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCc-hHHHHH--HHhCcHH
Q 007858 119 CFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLE-NTFFVS--IETGLYG 194 (587)
Q Consensus 119 h~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~-t~l~~a--~~~~~~~ 194 (587)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|. ||+|.| +..|+.+
T Consensus 75 ~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~ 153 (239)
T 1ycs_B 75 HNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQ 153 (239)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHH
Confidence 9999999999999999999996 9999999999999999999999999999999 777777776 999999 7889999
Q ss_pred HHHHHHHhccccccccc---------ccCCchHHHHHhhCCC
Q 007858 195 LALQLLKKNKKLLAGAT---------HAKYGTAMHMLARNPS 227 (587)
Q Consensus 195 ~v~~Ll~~~~~~~~~~~---------d~~g~t~Lh~a~~~~~ 227 (587)
+++.|++. ++..+.. +..+.++++++...|.
T Consensus 154 ~~~~Ll~~--~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 154 CSQFLYGV--QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHHHH--HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHHHh--hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 99999998 5555443 6678888888888775
No 79
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=3.1e-25 Score=198.03 Aligned_cols=143 Identities=15% Similarity=0.099 Sum_probs=135.0
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAAL 157 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 157 (587)
+.||||.|+..|+.+++++|++.. +.+ ++.+|..|.||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~-~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 77 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRE-LVH-PDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-CCC-TTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cchHHHHHHHhCCHHHHHHHHHhh-CcC-ccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHH
Confidence 579999999999999999999983 467 89999999999999 9999999999999999996 9999999999999999
Q ss_pred hCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 158 FGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 158 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
.|+.+++++|+++++ .+..+.+|.||||.|+..|+.+++++|++. ...+.+|..|.||||+|+..++
T Consensus 78 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---~~~~~~~~~g~t~l~~A~~~~~ 145 (156)
T 1bd8_A 78 TGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE---SDLHRRDARGLTPLELALQRGA 145 (156)
T ss_dssp TTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT---SCTTCCCTTSCCHHHHHHHSCC
T ss_pred cCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc---cCCCCcCCCCCCHHHHHHHcCc
Confidence 999999999999998 888999999999999999999999999985 6777899999999999999998
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=1.9e-25 Score=214.51 Aligned_cols=146 Identities=11% Similarity=0.000 Sum_probs=97.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
+..|.||||.|++.|+.+.++.|+++| .+ ++. +..|.||||.|+..|+.+++++|++.|+++ +.+|..|.||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g--~~-~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHG--MR-VKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHN 76 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccC--CC-ccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 356899999999999999999999999 66 654 477899999999999999999999999985 9999999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCc-hHHHHH--hhCCC
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYG-TAMHML--ARNPS 227 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~-t~Lh~a--~~~~~ 227 (587)
|+..|+.+++++|+++++ .+..|.+|.||||.|+..|+.++++.|+++ +..++.++..|. ||||+| +..++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~t~l~~a~~~~~g~ 151 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAAVFAMTYSDMQTAADKCEEMEEGY 151 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHHCCSSSTTC
T ss_pred HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcceecCCCCcchHHHHHHhhhcc
Confidence 999999999999999988 777888888888888888888888888887 777777777666 888877 45554
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.91 E-value=4.1e-25 Score=202.93 Aligned_cols=154 Identities=8% Similarity=-0.002 Sum_probs=137.5
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCH----HHHHHHHHccCCCCccccCCCCCCc
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQT----NFVKQMVELTGHDNLLSLQDENGNT 116 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~iv~~Ll~~~~~~~ll~~~d~~g~T 116 (587)
+++++|+.|++.|+.+.++.++ ... ++...+..|.||||+|+..|+. +++++|+++| ++ ++.+|..|+|
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~-~~~---~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G--ad-vn~~d~~g~T 77 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELF-EKG---YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG--AD-IKSRTKEGTT 77 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHH-HHS---SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT--CC-SSCCCTTCCC
T ss_pred ccccHHHHHHHcCCHHHHHHHH-hcC---cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCC--CC-CCCCCCCCCc
Confidence 4578899999999999999999 433 3334236799999999999975 5999999999 99 9999999999
Q ss_pred HHHHHHHcCC------HHHHHHHHhcCCcccccCCCCCC-cHHHHHHHhCC-----hHHHHHHhh-cCC-CCCCCCCCch
Q 007858 117 AFCFAAAVGS------VEIAQFMLQRNPNLLTIRGGGQM-TPLYIAALFGQ-----SKMASFLYR-QNE-DNLEPDDLEN 182 (587)
Q Consensus 117 pLh~Aa~~g~------~~iv~~Ll~~~~~l~~~~~~~g~-tpL~~A~~~g~-----~~~v~~Ll~-~~~-~~~~~~~g~t 182 (587)
|||+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+. .+++++|++ +++ .+..|..|.|
T Consensus 78 pLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~T 156 (186)
T 3t8k_A 78 LFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLT 156 (186)
T ss_dssp THHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCC
Confidence 9999999987 68899999999996 99999999 99999999543 569999999 888 8999999999
Q ss_pred HHHHHHHhCcHHHHHHHHHh
Q 007858 183 TFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 183 ~l~~a~~~~~~~~v~~Ll~~ 202 (587)
|||+|++.++.++++.|.+.
T Consensus 157 pL~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 157 ALEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999986
No 82
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.9e-24 Score=188.20 Aligned_cols=127 Identities=13% Similarity=0.093 Sum_probs=107.6
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCC-CCc
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDEN-GNT 116 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~-g~T 116 (587)
.+..|.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+. |+.+++++|++.+ ++ ++.+|.. |.|
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~-~~~~~~~~g~t 80 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLL--EAGADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLHG--AE-PNCADPATLTR 80 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHH--HTTCCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHHT--CC-SSCCBTTTTBC
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHH--HcCCCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHCC--CC-CCCcCCCCCCC
Confidence 4667888888888888888888888 567777776 7888888888888 8888888888888 77 8888888 888
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE 172 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (587)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Ga 135 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 888888888888888888888885 8888888888888888888888888888764
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.5e-24 Score=193.59 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=110.1
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCc-
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNT- 116 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~T- 116 (587)
.+..|.||||.|+..|+.+++++|+ +.+.+++.. +..|.||||+|+ .|+.+++++|++.+ ++ ++.+|..|.|
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~g--~~-~~~~d~~g~tt 80 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALL--EAGANPNAP-NSYGRRPIQVMM-MGSARVAELLLLHG--AE-PNCADPATLTR 80 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHH--TTTCCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTTT--CC-CCCCCTTTCCC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHH--HcCCCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHcC--CC-CCCcCCCCCcH
Confidence 4567889999999999999999998 567888877 888999999985 88999999999988 88 8889999998
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHH
Q 007858 117 AFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFF 185 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~ 185 (587)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.|+.+
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999999999999999999999985 8888999999999999999999999998887 6667777776655
No 84
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.91 E-value=6e-24 Score=184.98 Aligned_cols=127 Identities=22% Similarity=0.236 Sum_probs=110.1
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
....+.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~d~~g~t~ 83 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILM--ANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNG--AD-VNAVDAIGFTP 83 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTCCCH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHH--HcCCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCcCCCCCCCH
Confidence 4566788999999999999999998 567788776 888999999999999999999999988 78 88889999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcC
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQN 171 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (587)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.|
T Consensus 84 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 84 LHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999885 888889999999999999999999988764
No 85
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=8.2e-24 Score=184.14 Aligned_cols=129 Identities=16% Similarity=0.083 Sum_probs=122.5
Q ss_pred cchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCC
Q 007858 68 SMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGG 147 (587)
Q Consensus 68 ~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~ 147 (587)
.+++.. +..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|+. |+.+++++|+++|+++ +.+|..
T Consensus 3 ~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~ 76 (136)
T 1d9s_A 3 PGIHML-GGSSDAGLATAAARGQVETVRQLLEAG--AD-PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA 76 (136)
T ss_dssp CCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred CCccCC-CCCCccHHHHHHHcCCHHHHHHHHHcC--CC-cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence 355655 889999999999999999999999998 88 99999999999999999 9999999999999996 899999
Q ss_pred -CCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 148 -QMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 148 -g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..++.+++++|+++
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999 888999999999999999999999999987
No 86
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.90 E-value=4.9e-24 Score=190.30 Aligned_cols=141 Identities=16% Similarity=0.062 Sum_probs=118.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCc-HHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMT-PLY 153 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~t-pL~ 153 (587)
+..|.||||+|+..|+.++|++|++.+ .+ ++.+|..|.||||+|+ .|+.+++++|+++|+++ +.+|..|.| |||
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~ 83 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEAG--AN-PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVH 83 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTTT--CC-TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHcC--CC-CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHH
Confidence 678999999999999999999999998 88 9999999999999985 89999999999999996 999999999 999
Q ss_pred HHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHH
Q 007858 154 IAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHML 222 (587)
Q Consensus 154 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a 222 (587)
+|+..|+.+++++|+++++ .+..+.+|.||||+|+..++.+++++|+++ ++.++.++..|.||.+.+
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 84 DAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA--AGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC--C-----------------
T ss_pred HHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc--CCCCCccCcCcCcccccC
Confidence 9999999999999999999 888999999999999999999999999997 999999999999998754
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.90 E-value=3.4e-23 Score=177.19 Aligned_cols=125 Identities=26% Similarity=0.369 Sum_probs=107.0
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHH
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCF 120 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~ 120 (587)
+|.||||.|+..|+.+++++|+ +.+.+++.. +..|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll--~~~~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~-~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLL--EAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--AD-VNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHH--HHTCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHH--HcCCCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHcC--CC-CcccCCCCCcHHHH
Confidence 4788899999999999888888 456677766 788889999999989999999988887 77 88888888899999
Q ss_pred HHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC
Q 007858 121 AAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE 172 (587)
Q Consensus 121 Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (587)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 99888999999998888885 7888888899999988888888888888875
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=5.6e-24 Score=195.29 Aligned_cols=159 Identities=10% Similarity=0.007 Sum_probs=141.2
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCccccCC-CCCCcHHHHHHHcCCH----HHHHHHHhcCCcccccCCCCCCcHH
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSLQD-ENGNTAFCFAAAVGSV----EIAQFMLQRNPNLLTIRGGGQMTPL 152 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~~~~l~~~~~~~g~tpL 152 (587)
+.++||.|++.|+.+.++.+++.+ ++.++ ..|+||||+|+.+|+. +++++|+++|+++ +.+|.+|+|||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~-----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpL 79 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKG-----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLF 79 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHS-----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcC-----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence 468999999999999999999887 44555 7799999999999985 5999999999996 99999999999
Q ss_pred HHHHHhCC------hHHHHHHhhcCC-CCCCCCCCc-hHHHHHHHh-----CcHHHHHHHHHhcccccccccccCCchHH
Q 007858 153 YIAALFGQ------SKMASFLYRQNE-DNLEPDDLE-NTFFVSIET-----GLYGLALQLLKKNKKLLAGATHAKYGTAM 219 (587)
Q Consensus 153 ~~A~~~g~------~~~v~~Ll~~~~-~~~~~~~g~-t~l~~a~~~-----~~~~~v~~Ll~~~~~~~~~~~d~~g~t~L 219 (587)
|+|+..++ .+++++|+++|+ ++..|.+|. ||||+|+.. +..++++.|++. .+++++.+|..|+|||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~-~gad~~~~d~~G~TpL 158 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQ-SGLQLLIKDKWGLTAL 158 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTS-TTCCTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHh-cCCCCcccCCCCCCHH
Confidence 99999997 578999999999 999999999 999999983 456799999993 3999999999999999
Q ss_pred HHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccch
Q 007858 220 HMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTH 271 (587)
Q Consensus 220 h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~ 271 (587)
|+|++.++ .+++++|.+...+.+.
T Consensus 159 ~~A~~~~~----------------------------~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 159 EFVKRCQK----------------------------PIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHHHTTTC----------------------------HHHHHHHHHHHHHHTC
T ss_pred HHHHHcCC----------------------------HHHHHHHHHHHHHHhc
Confidence 99999997 8999999887765543
No 89
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=5.1e-23 Score=198.08 Aligned_cols=165 Identities=19% Similarity=0.178 Sum_probs=142.4
Q ss_pred cccceeecCCCCCCCCCCcCCCCcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHH
Q 007858 14 QEISISITGRDPANSVQPLQNDKKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNF 93 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~i 93 (587)
.++.++....+..............+..|.||||.|+..|+.++++.|+ + +.+++.. |..|.||||+|+..|+.++
T Consensus 17 ~~~l~~~~~g~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~--~~~~~~~-d~~g~t~L~~A~~~g~~~~ 92 (244)
T 3ui2_A 17 MEYLIEWKDGHSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLL-E--DRDVDAV-DENGRTALLFVAGLGSDKC 92 (244)
T ss_dssp EEEEEEESSCCCCEEEEGGGSCHHHHHHHHHHHHHHHTTTCHHHHHHTT-T--TCCTTCB-CTTSCBHHHHHHHHTCHHH
T ss_pred cHHHHHHHcCCCcccccccccccccccCCCCHHHHHHHcCCHHHHHHHH-c--CCCCCCc-CCCCCCHHHHHHHCCCHHH
Confidence 4444555555555444444455566778999999999999999999999 4 7888887 9999999999999999999
Q ss_pred HHHHHHccCCCCccccCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC
Q 007858 94 VKQMVELTGHDNLLSLQD-ENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE 172 (587)
Q Consensus 94 v~~Ll~~~~~~~ll~~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (587)
|++|++++ ++ ++.+| ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++
T Consensus 93 v~~Ll~~g--a~-~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~------------ 156 (244)
T 3ui2_A 93 VRLLAEAG--AD-LDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK------------ 156 (244)
T ss_dssp HHHHHHTT--CC-TTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT------------
T ss_pred HHHHHHcC--CC-CCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh------------
Confidence 99999999 88 88888 88999999999999999999999999996 8999999999999997432
Q ss_pred CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 173 DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 173 ~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
...+.+||++|+..|+.++++.|++.
T Consensus 157 ----~~~~~~~l~~a~~~g~~~iv~~L~~~ 182 (244)
T 3ui2_A 157 ----TTPKGNPMQFGRRIGLEKVINVLEGQ 182 (244)
T ss_dssp ----TCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred ----ccCCCCHHHHHHHcChHHHHHHHHHh
Confidence 24678999999999999999999986
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=1.3e-22 Score=176.39 Aligned_cols=124 Identities=26% Similarity=0.299 Sum_probs=118.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
...+.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 86 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANG--AD-VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHL 86 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcC--CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 566899999999999999999999998 88 9999999999999999999999999999999996 8999999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
|+..|+.+++++|+++++ .+..|.+|.||||.|+..++.++++.|++.
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 999999999999999998 888999999999999999999999999985
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=6.1e-23 Score=188.37 Aligned_cols=144 Identities=19% Similarity=0.213 Sum_probs=130.3
Q ss_pred CCcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCC-CC
Q 007858 35 DKKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQD-EN 113 (587)
Q Consensus 35 ~~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d-~~ 113 (587)
....+..|.||||.|+..|+.++++.|+ + +.+++.. |..|.||||+|+..|+.+++++|++.+ ++ ++.+| ..
T Consensus 37 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-~--~~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~-~~~~~~~~ 109 (183)
T 3deo_A 37 AADVVSEYETPWWTAARKADEQALSQLL-E--DRDVDAV-DENGRTALLFVAGLGSDKCVRLLAEAG--AD-LDHRDMRG 109 (183)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHT-T--TSCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCSSS
T ss_pred cccCCCCCCCHHHHHHHcCCHHHHHHHH-h--cCCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCcCCCCC
Confidence 3445678999999999999999999999 4 7888887 999999999999999999999999999 88 88888 88
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCcH
Q 007858 114 GNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGLY 193 (587)
Q Consensus 114 g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~~ 193 (587)
|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..++. ..+.++++.|+..|..
T Consensus 110 g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~ 172 (183)
T 3deo_A 110 GLTALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLE 172 (183)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHH
T ss_pred CCCHHHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHH
Confidence 999999999999999999999999996 99999999999999986533 3467899999999999
Q ss_pred HHHHHHHHh
Q 007858 194 GLALQLLKK 202 (587)
Q Consensus 194 ~~v~~Ll~~ 202 (587)
++++.|.++
T Consensus 173 ~i~~~L~~~ 181 (183)
T 3deo_A 173 KVINVLEGQ 181 (183)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHHh
Confidence 999998764
No 92
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=4.5e-22 Score=170.16 Aligned_cols=122 Identities=22% Similarity=0.346 Sum_probs=117.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAA 156 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 156 (587)
+|.||||.|+..|+.+++++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~--~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--AD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHT--CC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcC--CC-CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence 5899999999999999999999998 88 8999999999999999999999999999999996 899999999999999
Q ss_pred HhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 157 LFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 157 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
..|+.+++++|+++++ .+..+.+|.||++.|+..++.+++++|+++
T Consensus 77 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 9999999999999998 888999999999999999999999999997
No 93
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.88 E-value=1.2e-23 Score=202.44 Aligned_cols=172 Identities=17% Similarity=0.179 Sum_probs=146.7
Q ss_pred CCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHH
Q 007858 40 SHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFC 119 (587)
Q Consensus 40 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh 119 (587)
..+.+++..++..|+.+.+..+. ..+.++ +.+|.||||.|+..|+.++|+.|++ + .+ ++.+|..|.||||
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~--~~~~~~----~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~-~~~~d~~g~t~L~ 82 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSS--YIAADV----VSEYETPWWTAARKADEQALSQLLE-D--RD-VDAVDENGRTALL 82 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGG--GSCHHH----HHHHHHHHHHHHTTTCHHHHHHTTT-T--CC-TTCBCTTSCBHHH
T ss_pred CCCccHHHHHHHcCCCccccccc--cccccc----ccCCCCHHHHHHHcCCHHHHHHHHc-C--CC-CCCcCCCCCCHHH
Confidence 44566666777777776665544 333333 4569999999999999999999999 7 78 9999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCcccccCC-CCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHH
Q 007858 120 FAAAVGSVEIAQFMLQRNPNLLTIRG-GGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLAL 197 (587)
Q Consensus 120 ~Aa~~g~~~iv~~Ll~~~~~l~~~~~-~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~ 197 (587)
+|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..+
T Consensus 83 ~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~------ 155 (244)
T 3ui2_A 83 FVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------ 155 (244)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH------
T ss_pred HHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH------
Confidence 999999999999999999996 7777 889999999999999999999999999 8889999999999998642
Q ss_pred HHHHhcccccccccccCCchHHHHHhhCCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhcc
Q 007858 198 QLLKKNKKLLAGATHAKYGTAMHMLARNPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKS 269 (587)
Q Consensus 198 ~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~ 269 (587)
....+.||||+|+..|+ .+++++|.+.+.+.
T Consensus 156 -------------~~~~~~~~l~~a~~~g~----------------------------~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 156 -------------KTTPKGNPMQFGRRIGL----------------------------EKVINVLEGQVFEY 186 (244)
T ss_dssp -------------TTCCCSSHHHHHHHHHH----------------------------HHHHHHHHHHHEEE
T ss_pred -------------hccCCCCHHHHHHHcCh----------------------------HHHHHHHHHhcccc
Confidence 23578999999999986 89999999886543
No 94
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=4.8e-23 Score=179.44 Aligned_cols=127 Identities=15% Similarity=0.105 Sum_probs=89.8
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
.+..|+||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~-~~~~~~~g~t~ 79 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLL--QNGSDPNVK-DHAGWTPLHEACNHGHLKVVELLLQHK--AL-VNTTGYQNDSP 79 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHH--HTTCCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCGGGCCH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHcC--Cc-ccCcCCCCCCH
Confidence 4566777777777777777777777 456666655 677777777777777777777777776 66 67777777777
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcC
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQN 171 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (587)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+..+++++|.+..
T Consensus 80 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 80 LHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 77777777777777777777774 777777777777777777777766665544
No 95
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.8e-22 Score=171.06 Aligned_cols=112 Identities=18% Similarity=0.190 Sum_probs=78.6
Q ss_pred cCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHH
Q 007858 39 YSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAF 118 (587)
Q Consensus 39 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpL 118 (587)
+..|.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|+|||
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll--~~~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~~~~d~~g~tpL 77 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYV--AKGEDVNRT-LEGGRKPLHYAADCGQLEILEFLLLKG--AD-INAPDKHHITPL 77 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHH--HTTCCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTTT--CC-TTCCCTTSCCHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHH--HcCCCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHcC--CC-CCcCCCCCCCHH
Confidence 345667777777777777777777 455666655 667777777777777777777777776 66 777777777777
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHH
Q 007858 119 CFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAAL 157 (587)
Q Consensus 119 h~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~ 157 (587)
|+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 78 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 78 LSAVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence 7777777777777777777774 6777777777777743
No 96
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=1.7e-22 Score=175.92 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=116.0
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHH
Q 007858 74 VTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLY 153 (587)
Q Consensus 74 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~ 153 (587)
.|.+|.||||+|+..|+.+++++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNG--SD-PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTT--CC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 3889999999999999999999999998 88 9999999999999999999999999999999996 899999999999
Q ss_pred HHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 154 IAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 154 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
+|+..|+.+++++|+++++ .+..|.+|.||+++|+..+..++++.|.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 9999999999999999998 888999999999999999888888777665
No 97
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.86 E-value=9.4e-22 Score=167.80 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=105.9
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYI 154 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~ 154 (587)
+..|.||||.|+..|+.+++++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKG--ED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTT--CC-TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcC--CC-cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 567899999999999999999999998 88 9999999999999999999999999999999996 9999999999999
Q ss_pred HHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHH
Q 007858 155 AALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGL 195 (587)
Q Consensus 155 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~ 195 (587)
|+..|+.+++++|+++++ .+..+.+|.||+|+|...+..++
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence 999999999999999998 88899999999999955444433
No 98
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.86 E-value=7.1e-22 Score=195.84 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=97.6
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCcccc------CCCCCCcHHHHHHHc---CCHHHHHHHHhcCCcccccCCCCC
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSL------QDENGNTAFCFAAAV---GSVEIAQFMLQRNPNLLTIRGGGQ 148 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~l~~~~~~~g 148 (587)
+.++||.|+..|+.+.|+.|++.+ ++ ++. .|..|.||||+|+.. |+.+++++|+++|+++ +.+|.+|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d-~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G 226 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG--QD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG 226 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT--CC-TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC--Cc-ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCC
Confidence 456677777777777777777776 66 555 577777777777776 6777777777777775 7777777
Q ss_pred CcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 149 MTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 149 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
.||||+|+..|+.+++++|+++++ ++..|.+|.||||+|+..++.+++++|++. ++. .|.||||+|+..|+
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~--ga~------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA--QAG------TFAFPLHVDYSWVI 298 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH--HHH------TTSSCCC-------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh--cCC------CCCChhHHHHhcCC
Confidence 777777777777777777777777 667777777777777777777777777776 332 57888888887765
No 99
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=6.1e-22 Score=181.70 Aligned_cols=129 Identities=22% Similarity=0.260 Sum_probs=118.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCC-CCCCcHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRG-GGQMTPLY 153 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~-~~g~tpL~ 153 (587)
+.+|.||||.|+..|+.++++.|++ + .+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-D--RD-VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-T--SC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-c--CC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 5678999999999999999999999 7 78 9999999999999999999999999999999996 7777 89999999
Q ss_pred HHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhhCCC
Q 007858 154 IAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLARNPS 227 (587)
Q Consensus 154 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~~~~ 227 (587)
+|+..|+.+++++|+++++ .+..|.+|.||||+|++.++ ...+.++|++++..+.
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------~~~~~~~l~~a~~~~~ 171 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQFGRRIGL 171 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-------------------TCCCCSHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-------------------CcccccHHHHHHHcCH
Confidence 9999999999999999999 88899999999999987632 2457899999999885
No 100
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=4.6e-22 Score=188.58 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=58.3
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCcccccCCCCCCcHHH
Q 007858 75 TKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQR-NPNLLTIRGGGQMTPLY 153 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-~~~l~~~~~~~g~tpL~ 153 (587)
+.+|.||||+|+..|+.++|++|++.+ .+ ++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~ 145 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNR--VG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALH 145 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCC--CC-ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHH
Confidence 334445555555555555555555444 44 444444455555555555555555555544 4443 444444555555
Q ss_pred HHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 154 IAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 154 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
+|+..|+.+++++|+++++ .+..+.+|.|||++|+..+..++++.|++.
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~ 195 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT 195 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence 5555555555555555444 444444455555555544444444444443
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=1.5e-21 Score=184.91 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=114.1
Q ss_pred cCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHc-cCCCCccccCCCCCCcH
Q 007858 39 YSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVEL-TGHDNLLSLQDENGNTA 117 (587)
Q Consensus 39 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~ll~~~d~~g~Tp 117 (587)
+..|.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.++|++|++. + ++ ++.+|..|.||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll--~~g~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~g--~~-~~~~d~~g~tp 143 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECL--DNRVGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQPN--IE-LNQQNKLGDTA 143 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTSTT--CC-CCCCCTTSCCH
T ss_pred ccccccccccccccCcHHHHHHHH--hCCCCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCCC--CC-ccccCCCCCCH
Confidence 446789999999999999999999 678888877 89999999999999999999999998 6 88 99999999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE 172 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (587)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.++++.|++.++
T Consensus 144 L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 144 LHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 99999999999999999999996 9999999999999999999999999999987
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.84 E-value=9.2e-21 Score=187.82 Aligned_cols=142 Identities=15% Similarity=0.143 Sum_probs=123.5
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhh-----cCCCCCcHHHHHHhc---CCHHHHHHHHHccCCCCccccCCC
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAA-----VTKGYQTILHVATGA---KQTNFVKQMVELTGHDNLLSLQDE 112 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~ll~~~d~ 112 (587)
.+.++|+.|+..|+.+.++.|+ +.+.+++.. .+..|.||||+|+.. |+.+++++|+++| ++ ++.+|.
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll--~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--ad-vn~~d~ 224 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAF--ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GH-LDAKAA 224 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHH--HTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS--SC-TTCCCT
T ss_pred chHHHHhhhhhccCHHHHHHHH--hcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC--CC-CCCCCC
Confidence 3457799999999999999999 677888762 388999999999997 8999999999999 88 999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCCCCCCCCchHHHHHHHhCc
Q 007858 113 NGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDNLEPDDLENTFFVSIETGL 192 (587)
Q Consensus 113 ~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~l~~a~~~~~ 192 (587)
.|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.++ ..|.||||+|+..|+
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-----~~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA-----GTFAFPLHVDYSWVI 298 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-----HTTSSCCC-------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-----CCCCChhHHHHhcCC
Confidence 9999999999999999999999999996 9999999999999999999999999999987 368899999998875
Q ss_pred H
Q 007858 193 Y 193 (587)
Q Consensus 193 ~ 193 (587)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 3
No 103
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=3.6e-20 Score=149.40 Aligned_cols=92 Identities=25% Similarity=0.402 Sum_probs=78.9
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHH
Q 007858 77 GYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAA 156 (587)
Q Consensus 77 ~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~ 156 (587)
+|+||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--AD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC--CC-CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence 4788899999888899999888888 77 8888888899999999888999999998888885 888888889999998
Q ss_pred HhCChHHHHHHhhcCC
Q 007858 157 LFGQSKMASFLYRQNE 172 (587)
Q Consensus 157 ~~g~~~~v~~Ll~~~~ 172 (587)
..|+.+++++|+++++
T Consensus 77 ~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGA 92 (93)
T ss_dssp HTTCHHHHHHHHHTTC
T ss_pred HcCCHHHHHHHHHcCC
Confidence 8888888888888774
No 104
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=7.6e-20 Score=179.13 Aligned_cols=124 Identities=20% Similarity=0.239 Sum_probs=80.3
Q ss_pred ChHhHHHHHcCCHHHHHHHHhhcCccchhhhc-----CCCCCcHHHHHHhc---CCHHHHHHHHHccCCCCccccCCCCC
Q 007858 43 CVPLYKAALKGDCNEAKRILGDDHQSMLRAAV-----TKGYQTILHVATGA---KQTNFVKQMVELTGHDNLLSLQDENG 114 (587)
Q Consensus 43 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-----~~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~ll~~~d~~g 114 (587)
.++|+.|+..|+.+.++.++ ..+.+++... +..|.||||+|+.. |+.+++++|+++| ++ ++.+|..|
T Consensus 131 l~~l~~a~~~~d~~~~~~ll--~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g--a~-in~~d~~g 205 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAY--ADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS--GN-LDKQTGKG 205 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHH--HTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC--SC-TTCCCTTC
T ss_pred hhhhhhHhhhcccHHHHHHH--HhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC--CC-ccccCCCC
Confidence 35666666666666666666 3344432221 55566677766666 6666666666666 66 66666666
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC
Q 007858 115 NTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE 172 (587)
Q Consensus 115 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (587)
+||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++
T Consensus 206 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 206 STALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 67777766666666666666666664 6666666667776666666666666666665
No 105
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.82 E-value=4.4e-20 Score=187.12 Aligned_cols=125 Identities=20% Similarity=0.222 Sum_probs=82.4
Q ss_pred CCChHhHHHHHc-CCHHHHHHHHhhcCccchhhhcC--CCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcH
Q 007858 41 HKCVPLYKAALK-GDCNEAKRILGDDHQSMLRAAVT--KGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTA 117 (587)
Q Consensus 41 ~~~t~L~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~Tp 117 (587)
.+.|+||.|+.. |+.++++.|+ +.+.+++.. + ..|.||||+|+..|+.++|++|++++ ++ ++.+|..|+||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL--~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G--ad-vn~~d~~G~Tp 271 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADAL--AHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNG--AN-VNQADSAGRGP 271 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHH--HTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCH
T ss_pred CCCcHHHHHHHccCCHHHHHHHH--HcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcC--CC-CCCCCCCCCCH
Confidence 345566666666 6666666666 456666654 4 56666666666666666666666666 66 66666666666
Q ss_pred HHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC
Q 007858 118 FCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE 172 (587)
Q Consensus 118 Lh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 172 (587)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+.
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~ 325 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKM 325 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence 66666666666666666666664 6666666666666666666666666666553
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.80 E-value=1.8e-19 Score=145.28 Aligned_cols=93 Identities=27% Similarity=0.374 Sum_probs=87.2
Q ss_pred CCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHH
Q 007858 41 HKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCF 120 (587)
Q Consensus 41 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~ 120 (587)
+|+||||.|+..|+.++++.|+ +.+.+++.+ |..|.||||+|+..|+.+++++|++.| ++ ++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll--~~g~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~-~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLL--EAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAG--AD-VNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHH--HcCCCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCccCCCCCCHHHH
Confidence 4799999999999999999999 678899887 999999999999999999999999999 88 99999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCc
Q 007858 121 AAAVGSVEIAQFMLQRNPN 139 (587)
Q Consensus 121 Aa~~g~~~iv~~Ll~~~~~ 139 (587)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999874
No 107
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.80 E-value=2.1e-19 Score=191.27 Aligned_cols=134 Identities=16% Similarity=0.149 Sum_probs=111.5
Q ss_pred ChHhHHHHHcCCHHHHHHHHhhcCccchhhh-----cCCCCCcHHHHHHh---cCCHHHHHHHHHccCCCCccccCCCCC
Q 007858 43 CVPLYKAALKGDCNEAKRILGDDHQSMLRAA-----VTKGYQTILHVATG---AKQTNFVKQMVELTGHDNLLSLQDENG 114 (587)
Q Consensus 43 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~-----~~~~g~t~Lh~A~~---~g~~~iv~~Ll~~~~~~~ll~~~d~~g 114 (587)
.+.||.|+..|+.+.++.|+ +.+.+++.. .+..|.||||+|+. .|+.++|++|+++| ++ ++.+|..|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll--~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g--a~-vn~~d~~g 207 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAF--ANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GH-LDAKAADG 207 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHH--HTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS--CC-TTCCCSSS
T ss_pred HHHHHHHHhccCHHHHHHHH--hhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC--CC-CCccCCCC
Confidence 36799999999999999999 667777643 26689999999965 89999999999998 88 99999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHH
Q 007858 115 NTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSI 188 (587)
Q Consensus 115 ~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~ 188 (587)
+||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+. +|+|.+.
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeec
Confidence 99999999999999999999999995 8999999999999999999999999999998 332 5666554
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.79 E-value=4.2e-19 Score=179.99 Aligned_cols=148 Identities=15% Similarity=0.198 Sum_probs=117.5
Q ss_pred CCCCCcHHHHHHhc-CCHHHHHHHHHccCCCCccccCC--CCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcH
Q 007858 75 TKGYQTILHVATGA-KQTNFVKQMVELTGHDNLLSLQD--ENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTP 151 (587)
Q Consensus 75 ~~~g~t~Lh~A~~~-g~~~iv~~Ll~~~~~~~ll~~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp 151 (587)
+..+.|+||.|+.. |+.++++.|++.| ++ ++..| ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~G--ad-vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~Tp 271 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHG--AD-VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGP 271 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTT--CC-TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcC--CC-CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCH
Confidence 34567899999999 9999999999999 88 88888 89999999999999999999999999996 8999999999
Q ss_pred HHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhc-ccccccccccCCchHHHHHhhCC
Q 007858 152 LYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKN-KKLLAGATHAKYGTAMHMLARNP 226 (587)
Q Consensus 152 L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~-~~~~~~~~d~~g~t~Lh~a~~~~ 226 (587)
||+|+..|+.+++++|+++++ .+..|.+|.||||+|+..++.+++++|++.. ........+..+.|+++.+....
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 999999999999999999999 8889999999999999999999999999872 12223345566788888765543
No 109
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.79 E-value=1e-18 Score=171.08 Aligned_cols=161 Identities=17% Similarity=0.059 Sum_probs=133.0
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCcc----chhh------------------hcC-------CCCCcHHHHHHhc
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQS----MLRA------------------AVT-------KGYQTILHVATGA 88 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~----~~~~------------------~~~-------~~g~t~Lh~A~~~ 88 (587)
.|..+.++++.+...|+....+.+- ..-+. .+.. ... ....++||.|+..
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e-~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~ 140 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIME-CCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT 140 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHT-TTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHH-hhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence 4557788999999999876655442 11110 0000 000 0123689999999
Q ss_pred CCHHHHHHHHHccCCCCc-----cccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCcccccCCCCCCcHHHHHHHhCC
Q 007858 89 KQTNFVKQMVELTGHDNL-----LSLQDENGNTAFCFAAAV---GSVEIAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQ 160 (587)
Q Consensus 89 g~~~iv~~Ll~~~~~~~l-----l~~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~ 160 (587)
|+.+.++.+++.| .++ ++..|..|.||||+|+.. |+.+++++|+++|+++ +.+|..|.||||+|+..|+
T Consensus 141 ~d~~~~~~ll~~g--~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~ 217 (278)
T 1dcq_A 141 RDIFGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDN 217 (278)
T ss_dssp TCHHHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTC
T ss_pred cccHHHHHHHHhh--cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCC
Confidence 9999999999998 552 445588999999999999 8999999999999996 9999999999999999999
Q ss_pred hHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHh
Q 007858 161 SKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKK 202 (587)
Q Consensus 161 ~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~ 202 (587)
.+++++|+++++ ++..|.+|.||||+|+..|+.++++.|++.
T Consensus 218 ~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 218 AECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 999999999999 889999999999999999999999999998
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=2.6e-19 Score=150.52 Aligned_cols=106 Identities=24% Similarity=0.331 Sum_probs=50.7
Q ss_pred cCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHH
Q 007858 39 YSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAF 118 (587)
Q Consensus 39 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpL 118 (587)
+.+|.||||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll--~~g~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~-~~~~d~~g~tpl 79 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLL--SKGADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAKG--AD-VNARSKDGNTPE 79 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHT--TTTCCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTTT--CC-TTCCCTTCCCTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHH--HcCCCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHcC--CC-CcccCCCCCCHH
Confidence 344455555555555555555544 334444443 444555555555555555555555444 44 444444555555
Q ss_pred HHHHHcCCHHHHHHHHhcCCcccccCCCCCCcH
Q 007858 119 CFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTP 151 (587)
Q Consensus 119 h~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tp 151 (587)
|+|+..|+.+++++|+++|+++ +.++..|.||
T Consensus 80 ~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~ 111 (115)
T 2l6b_A 80 HLAKKNGHHEIVKLLDAKGADV-NARSWGSSHH 111 (115)
T ss_dssp HHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC--
T ss_pred HHHHHCCCHHHHHHHHHcCCCC-CcCCcccccc
Confidence 5555555555555555555543 4444444443
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.77 E-value=4.1e-19 Score=149.33 Aligned_cols=106 Identities=22% Similarity=0.282 Sum_probs=98.7
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHH
Q 007858 74 VTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLY 153 (587)
Q Consensus 74 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~ 153 (587)
.|.+|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~-~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~ 80 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG--AD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH 80 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTT--CC-SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 3889999999999999999999999998 88 9999999999999999999999999999999996 899999999999
Q ss_pred HHHHhCChHHHHHHhhcCC-CCCCCCCCchH
Q 007858 154 IAALFGQSKMASFLYRQNE-DNLEPDDLENT 183 (587)
Q Consensus 154 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 183 (587)
+|+..|+.+++++|+++++ .+..+..|.+|
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 9999999999999999998 77777777776
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.76 E-value=2.4e-18 Score=183.00 Aligned_cols=135 Identities=14% Similarity=0.090 Sum_probs=116.1
Q ss_pred CCcHHHHHHhcCCHHHHHHHHHccCCCCccccC------CCCCCcHHHHHHH---cCCHHHHHHHHhcCCcccccCCCCC
Q 007858 78 YQTILHVATGAKQTNFVKQMVELTGHDNLLSLQ------DENGNTAFCFAAA---VGSVEIAQFMLQRNPNLLTIRGGGQ 148 (587)
Q Consensus 78 g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~------d~~g~TpLh~Aa~---~g~~~iv~~Ll~~~~~l~~~~~~~g 148 (587)
..+.||.|+..|+.+.|+.|++.| ++ ++.. |..|.||||+|++ .|+.++|++|+++|+++ +.+|.+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g--~~-~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g 207 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANG--QD-FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADG 207 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTT--CC-SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSS
T ss_pred cHHHHHHHHhccCHHHHHHHHhhc--cc-ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCC
Confidence 347899999999999999999999 77 7766 8899999999976 89999999999999996 9999999
Q ss_pred CcHHHHHHHhCChHHHHHHhhcCC-CCCCCCCCchHHHHHHHhCcHHHHHHHHHhcccccccccccCCchHHHHHhh
Q 007858 149 MTPLYIAALFGQSKMASFLYRQNE-DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLLAGATHAKYGTAMHMLAR 224 (587)
Q Consensus 149 ~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~~~~~d~~g~t~Lh~a~~ 224 (587)
.||||+|+..|+.+++++|+++++ .+..|.+|.||||+|+..|+.++++.|++. ++..+. +|+|.+..
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~--ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA--QAGTFA------FPLHVDYS 276 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT--CC------------------
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh--CCCCCC------Ccceeecc
Confidence 999999999999999999999999 889999999999999999999999999998 665544 67777654
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.72 E-value=1.9e-17 Score=137.84 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=79.1
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcHHH
Q 007858 74 VTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGNTAFCFAAAVGSVEIAQFMLQRNPNLLTIRGGGQMTPLY 153 (587)
Q Consensus 74 ~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~~~~l~~~~~~~g~tpL~ 153 (587)
.+.+|.||||+|+..|+.+++++|++.+ ++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~-i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~ 95 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANG--AD-VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD 95 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTT--CC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcC--CC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence 3788899999999999999999999888 78 8888999999999999999999999999999885 888899999999
Q ss_pred HHHHhCChHHHHHH
Q 007858 154 IAALFGQSKMASFL 167 (587)
Q Consensus 154 ~A~~~g~~~~v~~L 167 (587)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999998876
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.66 E-value=2.1e-16 Score=131.49 Aligned_cols=92 Identities=25% Similarity=0.302 Sum_probs=84.1
Q ss_pred CcccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccccCCCCCC
Q 007858 36 KKQYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLSLQDENGN 115 (587)
Q Consensus 36 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~~~d~~g~ 115 (587)
...+.+|.|+||.|+..|+.++++.|+ +.+.+++.. |..|.||||+|+..|+.+++++|+++| ++ ++.+|..|.
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll--~~g~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~g--a~-~~~~d~~g~ 91 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILM--ANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAG--AD-VXAQDKFGK 91 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHH--HTTCCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHTT--CC-TTCCCTTSC
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHH--HcCCCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHcC--CC-ccccccCCC
Confidence 356788999999999999999999999 678888887 899999999999999999999999998 88 999999999
Q ss_pred cHHHHHHHcCCHHHHHHH
Q 007858 116 TAFCFAAAVGSVEIAQFM 133 (587)
Q Consensus 116 TpLh~Aa~~g~~~iv~~L 133 (587)
||||+|+..|+.+++++|
T Consensus 92 tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 92 TAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp CHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHcCCHHHHHHh
Confidence 999999999999999987
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=65.18 E-value=42 Score=32.65 Aligned_cols=188 Identities=8% Similarity=-0.049 Sum_probs=105.6
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccc-cCCCCCCc
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLS-LQDENGNT 116 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~-~~d~~g~T 116 (587)
.|..|.-.|......++.+..+.++.+-.+.-+....|..|+..+-.....|..+....+++.- ...+.. ..|..|.-
T Consensus 33 ~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i-~g~~~~l~~~~~G~r 111 (351)
T 3gvo_A 33 QDQHGSRFIQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRI-RGHVLPLALQMYGCR 111 (351)
T ss_dssp TSHHHHHHHHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHH-TTCHHHHHTSTTHHH
T ss_pred cCCcchHHHHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHH-HhhHHHHhhCHHhHH
Confidence 4556666777777778777666666222233344445888888888888888877777666654 122122 35677777
Q ss_pred HHHHHHHcCCHHHHHHHHhc-CCc-ccccCCCCCCcHHHHHHHhCChHHHHHHhhcCCCC----CCCCCCchHHHHHHHh
Q 007858 117 AFCFAAAVGSVEIAQFMLQR-NPN-LLTIRGGGQMTPLYIAALFGQSKMASFLYRQNEDN----LEPDDLENTFFVSIET 190 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~-~~~-l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~----~~~~~g~t~l~~a~~~ 190 (587)
.+.-+......+-...+++. .+. ..-..|..|...+......+..+..+.+++.-..+ ..+..|...+..+.+.
T Consensus 112 vvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~ 191 (351)
T 3gvo_A 112 VIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEH 191 (351)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHH
Confidence 77777766666544444443 111 12345667766666666666655555555443311 1556666666666655
Q ss_pred CcHHHHHHHHHhc-ccccccccccCCchHHHHHhhCC
Q 007858 191 GLYGLALQLLKKN-KKLLAGATHAKYGTAMHMLARNP 226 (587)
Q Consensus 191 ~~~~~v~~Ll~~~-~~~~~~~~d~~g~t~Lh~a~~~~ 226 (587)
...+-...+++.- .....-..|..|+-.+......+
T Consensus 192 ~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~ 228 (351)
T 3gvo_A 192 CTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHG 228 (351)
T ss_dssp SCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhC
Confidence 4443333333220 01122245667766666666554
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=59.23 E-value=56 Score=31.71 Aligned_cols=263 Identities=10% Similarity=0.006 Sum_probs=150.0
Q ss_pred hcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCcc-ccCCCCCCcHHHHHHHcCCHHHHHHHHhc--CCcccccCCCCCC
Q 007858 73 AVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLL-SLQDENGNTAFCFAAAVGSVEIAQFMLQR--NPNLLTIRGGGQM 149 (587)
Q Consensus 73 ~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll-~~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~--~~~l~~~~~~~g~ 149 (587)
..|.+|.-.|......+..+-.+.+.+.-. .+++ =..|..|+..+.-....+..+....+++. |.-+.-..+..|.
T Consensus 32 a~dq~gsR~lQ~~l~~~~~~~~~~i~~ei~-~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~ 110 (351)
T 3gvo_A 32 SQDQHGSRFIQQKLERATPAERQIVFNEIL-QAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGC 110 (351)
T ss_dssp HTSHHHHHHHHHHHHHCCHHHHHHHHHHHG-GGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHH
T ss_pred hcCCcchHHHHHHHhhCCHHHHHHHHHHHH-HhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhH
Confidence 335666666777777776665555554431 1112 24788888888888888888777666653 2222235678888
Q ss_pred cHHHHHHHhCChHHHHHHhhcCC----CCCCCCCCchHHHHHHHhCcHHHHHHHHHhccccc-ccccccCCchHHHHHhh
Q 007858 150 TPLYIAALFGQSKMASFLYRQNE----DNLEPDDLENTFFVSIETGLYGLALQLLKKNKKLL-AGATHAKYGTAMHMLAR 224 (587)
Q Consensus 150 tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~l~~a~~~~~~~~v~~Ll~~~~~~~-~~~~d~~g~t~Lh~a~~ 224 (587)
..+..+......+-...+++.-. .-..|..|+..+..+...+..+....+++.-.+.. .-..+..|...+..+..
T Consensus 111 rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQk~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le 190 (351)
T 3gvo_A 111 RVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQKCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILE 190 (351)
T ss_dssp HHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHH
Confidence 88888877777655555554332 22277888888888877666555555554411111 12345667777666655
Q ss_pred CCCCcccCCCCCccccchhhhhccCCCchHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHhC
Q 007858 225 NPSAFTSNCPGWLKVPGIKFITNNTDSSTQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRSY 304 (587)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~~ 304 (587)
... ..+...+++.+.... ...-.+..|+..+......+..+..+.+++.-
T Consensus 191 ~~~------------------------~~~~~~ii~~l~~~~------~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~l 240 (351)
T 3gvo_A 191 HCT------------------------AEQTLPILEELHQHT------EQLVQDQYGNYVIQHVLEHGRPEDKSKIVSEI 240 (351)
T ss_dssp HSC------------------------HHHHHHHHHHHHTTH------HHHHTSTTHHHHHHHHHHHSCHHHHHHHHHTT
T ss_pred HCC------------------------HHHHHHHHHHHhhhH------HhcCCCchHHHHHHHHHHhCchhhHHHHHHHH
Confidence 432 011123333332211 11223446677777777777776666666542
Q ss_pred C-Ccc-ccccCCCCchHHHHHHcCChh----HHHHHHhc--CcchhhhhhhccCCCCcHHHHHHHcCCCC
Q 007858 305 P-DLV-HQLDENGRSIFHIAVMHRHAD----TFKLIYEM--GFDKELIATYVDVSGNNLLHLAAQYSNPK 366 (587)
Q Consensus 305 ~-~~~-~~~d~~g~t~Lh~A~~~~~~~----iv~~Ll~~--g~~~~~~~~~~d~~G~TpLhlA~~~~~~~ 366 (587)
. ... -..++.|...+..+...+..+ +++.++.. |.......=.+|..||-.+..+...+.++
T Consensus 241 ~~~~~~Ls~~k~gs~Vvek~l~~~~~~~r~~ii~el~~~~~~~~~~l~~l~~d~ygnyViq~~L~~~~~~ 310 (351)
T 3gvo_A 241 RGKVLALSQHKFASNVVEKCVTHASRAERALLIDEVCCQNDGPHSALYTMMKDQYANYVVQKMIDMAEPA 310 (351)
T ss_dssp TTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHSCEETTEEHHHHHHHSTTHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhCCHHHHHHHHHHHhcccCCCChHHHHccCCcchHHHHHHHHHhCCHH
Confidence 2 211 135677888888887776654 44444432 11111111257888888888887766543
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=43.33 E-value=1.2e+02 Score=29.57 Aligned_cols=188 Identities=7% Similarity=-0.075 Sum_probs=109.6
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccc-cCCCCCCc
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLS-LQDENGNT 116 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~-~~d~~g~T 116 (587)
.+..|.-.+..+...++.+..+.++++-.+.-+....|..|+..+......+..+..+.+++.- ..++.. ..+..|.-
T Consensus 38 ~d~~gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~-~g~~~~L~~~~~G~r 116 (369)
T 3k49_A 38 KDQHGSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQF-KGNMKQLSLQMYACR 116 (369)
T ss_dssp TSHHHHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHH-TTCHHHHHHSTTHHH
T ss_pred cCCcchHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHH-hhhHHHHhcChhhHH
Confidence 4556677788888888887777777222344444445899999999999999888777777764 122111 24666766
Q ss_pred HHHHHHHcCCHHHHHHHHhc-CCc-ccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC----CCCCCCCCchHHHHHHHh
Q 007858 117 AFCFAAAVGSVEIAQFMLQR-NPN-LLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE----DNLEPDDLENTFFVSIET 190 (587)
Q Consensus 117 pLh~Aa~~g~~~iv~~Ll~~-~~~-l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~l~~a~~~ 190 (587)
.+.-+......+-...+++. .+. ..-..|.+|.-.+......+..+-.+.+++.-. .-..++.|...+..+...
T Consensus 117 VlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~ 196 (369)
T 3k49_A 117 VIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEF 196 (369)
T ss_dssp HHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHh
Confidence 66666666655544444442 111 112456666666666665555443333333222 112567777777777777
Q ss_pred CcHHHHHHHHHhccc-ccccccccCCchHHHHHhhCC
Q 007858 191 GLYGLALQLLKKNKK-LLAGATHAKYGTAMHMLARNP 226 (587)
Q Consensus 191 ~~~~~v~~Ll~~~~~-~~~~~~d~~g~t~Lh~a~~~~ 226 (587)
+..+--+.+++.-.+ ...-..|..|+-.+..+...+
T Consensus 197 ~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 197 GSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp SCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 766555555543111 111235666776666666555
No 118
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=34.51 E-value=32 Score=33.72 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 007858 519 TLFIALATMMLSFSSSFFLAY 539 (587)
Q Consensus 519 ~l~~s~~~m~~af~~~~~~v~ 539 (587)
+..+++++|..+|++|+|-+-
T Consensus 306 LTiit~IflP~T~IaGiyGMN 326 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGMN 326 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHHHHHhhhccc
Confidence 455788999999999999763
No 119
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=33.97 E-value=45 Score=32.25 Aligned_cols=21 Identities=0% Similarity=-0.015 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 007858 519 TLFIALATMMLSFSSSFFLAY 539 (587)
Q Consensus 519 ~l~~s~~~m~~af~~~~~~v~ 539 (587)
+..++++++..+|++|+|-+=
T Consensus 282 LTiit~IflP~T~IaGiyGMN 302 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGMN 302 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhhccCc
Confidence 455788899999999999774
No 120
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=28.85 E-value=2.1e+02 Score=27.71 Aligned_cols=151 Identities=12% Similarity=0.017 Sum_probs=86.0
Q ss_pred ccCCCChHhHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHHccCCCCccc-cCCCCCCc
Q 007858 38 QYSHKCVPLYKAALKGDCNEAKRILGDDHQSMLRAAVTKGYQTILHVATGAKQTNFVKQMVELTGHDNLLS-LQDENGNT 116 (587)
Q Consensus 38 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~ll~-~~d~~g~T 116 (587)
.+..|+..+......++.+....+++.-.+.-.....+..|...+..+......+-...+++.- ..++.. .+|..|+.
T Consensus 74 ~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el-~~~~~~L~~d~~Gn~ 152 (369)
T 3k49_A 74 NDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLEL-SDSVLQMIKDQNGNH 152 (369)
T ss_dssp HSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGG-TTCHHHHHHSTTHHH
T ss_pred hCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHH-HHHHHHHhcCcccch
Confidence 4677888888888888887776776222233333334778888888888777766666666543 122111 36777877
Q ss_pred HHHHHHHcCCHH----HHHHHHhcCCcccccCCCCCCcHHHHHHHhCChHHHHHHhhcCC----CCCCCCCCchHHHHHH
Q 007858 117 AFCFAAAVGSVE----IAQFMLQRNPNLLTIRGGGQMTPLYIAALFGQSKMASFLYRQNE----DNLEPDDLENTFFVSI 188 (587)
Q Consensus 117 pLh~Aa~~g~~~----iv~~Ll~~~~~l~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~l~~a~ 188 (587)
.+......+..+ +++.+..+-.. -..++.|...+.-+...+..+--+.+++.-. .-..|..|+-.+..+.
T Consensus 153 ViQ~~l~~~~~~~~~~i~~~~~~~~~~--ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l 230 (369)
T 3k49_A 153 VIQKAIETIPIEKLPFILSSLTGHIYH--LSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVL 230 (369)
T ss_dssp HHHHHHHHSCGGGCHHHHHHHTTTHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHH--HhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 777777665543 33333222111 2346667767776666666554444444322 1114555555555554
Q ss_pred HhC
Q 007858 189 ETG 191 (587)
Q Consensus 189 ~~~ 191 (587)
..+
T Consensus 231 ~~~ 233 (369)
T 3k49_A 231 QQD 233 (369)
T ss_dssp TCC
T ss_pred hcC
Confidence 443
No 121
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=27.55 E-value=98 Score=31.74 Aligned_cols=44 Identities=11% Similarity=0.037 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHhhccchhhhhhhccCCChHHHHHHHcCcHHHHHHHHHh
Q 007858 253 TQALELVKCLWKEISKSTHKDVLKLISKPSKLLFDAAHSGNFKFLAVLTRS 303 (587)
Q Consensus 253 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~iv~~Ll~~ 303 (587)
..+.++.+.+.+.|..++.... .+.+...++.|+.+-+..+++.
T Consensus 157 ~~A~~l~~~M~~~G~~Pd~~ty-------~~Li~~~~~~g~~d~A~~ll~~ 200 (501)
T 4g26_A 157 DKAYEVDAHMVESEVVPEEPEL-------AALLKVSMDTKNADKVYKTLQR 200 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHH-------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHH-------HHHHHHHhhCCCHHHHHHHHHH
Confidence 3456677777777777776655 5667777788887766666653
No 122
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.38 E-value=83 Score=21.07 Aligned_cols=17 Identities=18% Similarity=0.182 Sum_probs=9.4
Q ss_pred cCCCchHHHHHHHHHHH
Q 007858 540 RDRMNCFSMLTIILVFL 556 (587)
Q Consensus 540 ~~~~~~~~~~~~~~~~~ 556 (587)
|...+|..|.+.+++.+
T Consensus 4 ~~~vp~WiIi~svl~GL 20 (54)
T 2l8s_A 4 PGRVPLWVILLSAFAGL 20 (54)
T ss_dssp CCCCCTHHHHHHHHHHH
T ss_pred CccCchHHHHHHHHHHH
Confidence 33456666666555544
No 123
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=22.31 E-value=1.1e+02 Score=20.53 Aligned_cols=15 Identities=20% Similarity=0.089 Sum_probs=8.4
Q ss_pred CCchHHHHHHHHHHH
Q 007858 542 RMNCFSMLTIILVFL 556 (587)
Q Consensus 542 ~~~~~~~~~~~~~~~ 556 (587)
..+|..|.+.+++.+
T Consensus 9 ~vp~wiIi~svl~GL 23 (54)
T 2knc_A 9 AIPIWWVLVGVLGGL 23 (54)
T ss_dssp TCCHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHH
Confidence 346666666555544
No 124
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=21.80 E-value=1.6e+02 Score=18.57 Aligned_cols=13 Identities=8% Similarity=0.214 Sum_probs=8.5
Q ss_pred HHhhcccccCCCC
Q 007858 574 YSTCRSRFLVGPK 586 (587)
Q Consensus 574 ~~~~~~~~~~~~~ 586 (587)
..-|++++|.|.+
T Consensus 29 ~~LwK~GFFkR~~ 41 (42)
T 2k1a_A 29 LAMWKVGFFKRNR 41 (42)
T ss_dssp HHHHHTTTTCCCC
T ss_pred HHHHHcCcccCCC
Confidence 3456777777765
Done!