BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 007860
(587 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K46|A Chain A, Xenopus Laevis Malectin Complexed With Nigerose
(Glcalpha1- 3glc)
pdb|2KR2|A Chain A, Xenopus Laevis Malectin Complexed With Maltose
(Glcalpha1-4glc)
Length = 190
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 264 LYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDI 322
LYQT + + Y++ + + +Y++ FAE+ ++ Q+VFD+ VN V + +DI
Sbjct: 60 LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEV--YFAQSQQKVFDVRVNGHTVVKDLDI 117
Query: 323 FNSVGSFAAY 332
F+ VG A+
Sbjct: 118 FDRVGHSTAH 127
>pdb|2JWP|A Chain A, Malectin
Length = 174
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 264 LYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDI 322
LYQT + + Y++ + + +Y++ FAE+ ++ Q+VFD+ VN V + +DI
Sbjct: 56 LYQTERYNEDSFGYDIPIKEEGEYVLVLKFAEV--YFAQSQQKVFDVRVNGHTVVKDLDI 113
Query: 323 FNSVGSFAAY 332
F+ VG A+
Sbjct: 114 FDRVGHSTAH 123
>pdb|3OQC|A Chain A, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
pdb|3OQC|B Chain B, Ubiquitin-Fold Modifier 1 Specific Protease, Ufsp2
Length = 481
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 17/92 (18%)
Query: 57 YTSGATSIVSEPLHFRFPHEKTLRYFPPSSG---------KKNCYIIPNLPPGRYYIRTF 107
Y G + +V EPLHF+ P +K L SG +K + + NLP R Y +
Sbjct: 199 YMKGTSIVVPEPLHFQLPGKKNLVTVLYPSGIPDDQLQAYRKELHDLFNLPHDRPYFKRI 258
Query: 108 TVY--------DNYDGKSHSPSFDVSVEGTLV 131
Y D Y H+ ++EG+++
Sbjct: 259 NAYHFPDELYKDGYIRNPHTYLSPPNIEGSMI 290
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 473 LVRLDLSDNQFTGSIPDSLTSSSKXXXXXXXXXXXEGRVPEELYSI 518
LV L LS N +G+IP SL S SK EG +P+EL +
Sbjct: 417 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 472 SLVRLDLSDNQFTGSIPDSLTSSSKXXXXXXXXXXXEGRVPEELYSIGVHGGAFDLSVVY 531
+L LDLS N F G++P S S G +P + DLS
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-- 349
Query: 532 ICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKG--LPTLPLNPR 587
N++ LP+ L +LSA SL+ L++ S + G LP L NP+
Sbjct: 350 --------NEFSGELPESLTNLSA---------SLLTLDLSSNNFSGPILPNLCQNPK 390
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 473 LVRLDLSDNQFTGSIPDSLTSSSKXXXXXXXXXXXEGRVPEELYSI 518
LV L LS N +G+IP SL S SK EG +P+EL +
Sbjct: 420 LVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 47/118 (39%), Gaps = 21/118 (17%)
Query: 472 SLVRLDLSDNQFTGSIPDSLTSSSKXXXXXXXXXXXEGRVPEELYSIGVHGGAFDLSVVY 531
+L LDLS N F G++P S S G +P + DLS
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF-- 352
Query: 532 ICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKG--LPTLPLNPR 587
N++ LP+ L +LSA SL+ L++ S + G LP L NP+
Sbjct: 353 --------NEFSGELPESLTNLSA---------SLLTLDLSSNNFSGPILPNLCQNPK 393
>pdb|3GZU|A Chain A, Vp7 Recoated Rotavirus Dlp
pdb|3GZU|B Chain B, Vp7 Recoated Rotavirus Dlp
Length = 800
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 337 VAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVP---- 392
+A LS +++ V +LISG+ +VPND+ V A+ ++ P
Sbjct: 303 IAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIVNTIIYPAFGM 362
Query: 393 DRMGW-NGDPCAP 404
RM + NGDP P
Sbjct: 363 QRMHYRNGDPQTP 375
>pdb|3KZ4|A Chain A, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|3KZ4|B Chain B, Crystal Structure Of The Rotavirus Double Layered Particle
pdb|4F5X|A Chain A, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
pdb|4F5X|B Chain B, Location Of The Dsrna-dependent Polymerase, Vp1, In
Rotavirus Particles
Length = 880
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 337 VAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVP---- 392
+A LS +++ V +LISG+ +VPND+ V A+ ++ P
Sbjct: 383 IAAMLSQRTMSLDFVTTNYMSLISGMWLLTVVPNDMFIRESLVACQLAIVNTIIYPAFGM 442
Query: 393 DRMGW-NGDPCAP 404
RM + NGDP P
Sbjct: 443 QRMHYRNGDPQTP 455
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,879,399
Number of Sequences: 62578
Number of extensions: 702475
Number of successful extensions: 1410
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1381
Number of HSP's gapped (non-prelim): 34
length of query: 587
length of database: 14,973,337
effective HSP length: 104
effective length of query: 483
effective length of database: 8,465,225
effective search space: 4088703675
effective search space used: 4088703675
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)