Query 007860
Match_columns 587
No_of_seqs 425 out of 3399
Neff 8.4
Searched_HMMs 46136
Date Thu Mar 28 16:18:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007860.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007860hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03150 hypothetical protein; 100.0 1.1E-84 2.3E-89 725.1 50.1 499 11-519 5-514 (623)
2 PF12819 Malectin_like: Carboh 100.0 6E-59 1.3E-63 482.7 30.0 319 34-367 1-347 (347)
3 PLN03150 hypothetical protein; 99.9 3.2E-23 6.8E-28 231.8 20.3 319 31-512 193-532 (623)
4 PLN00113 leucine-rich repeat r 99.8 5E-18 1.1E-22 201.4 17.1 193 374-577 26-273 (968)
5 KOG0444 Cytoskeletal regulator 99.7 2.2E-19 4.8E-24 187.5 -0.1 239 337-582 10-286 (1255)
6 PF11721 Malectin: Di-glucose 99.7 1.1E-17 2.5E-22 156.7 7.6 141 31-177 2-174 (174)
7 PLN00113 leucine-rich repeat r 99.7 5.6E-17 1.2E-21 192.4 12.2 247 305-578 69-346 (968)
8 PF11721 Malectin: Di-glucose 99.6 1.5E-16 3.3E-21 149.1 4.9 141 201-351 2-151 (174)
9 KOG4194 Membrane glycoprotein 99.6 9.7E-16 2.1E-20 159.8 4.4 229 334-583 173-435 (873)
10 KOG0444 Cytoskeletal regulator 99.6 2.1E-16 4.5E-21 165.6 -0.9 243 335-584 33-359 (1255)
11 KOG0472 Leucine-rich repeat pr 99.6 3.7E-17 8.1E-22 163.7 -6.5 224 335-577 69-310 (565)
12 KOG0472 Leucine-rich repeat pr 99.5 1.4E-15 3E-20 152.5 -2.7 147 336-508 162-310 (565)
13 KOG4194 Membrane glycoprotein 99.5 2.9E-14 6.2E-19 149.0 6.5 158 400-560 44-233 (873)
14 KOG0617 Ras suppressor protein 99.5 1.3E-15 2.9E-20 136.4 -4.0 144 424-582 33-191 (264)
15 KOG0617 Ras suppressor protein 99.4 3E-14 6.5E-19 127.8 -1.4 159 336-518 35-195 (264)
16 PRK15370 E3 ubiquitin-protein 99.3 1.9E-12 4E-17 146.4 6.3 186 335-560 200-400 (754)
17 PF12819 Malectin_like: Carboh 99.2 5E-11 1.1E-15 124.3 11.1 151 31-182 180-347 (347)
18 KOG0618 Serine/threonine phosp 99.2 3.7E-12 7.9E-17 140.0 0.9 164 334-520 241-431 (1081)
19 PRK15387 E3 ubiquitin-protein 99.2 1E-10 2.3E-15 131.8 11.7 145 425-582 223-400 (788)
20 KOG4237 Extracellular matrix p 99.2 8.5E-12 1.8E-16 125.5 1.5 107 401-508 36-153 (498)
21 KOG0532 Leucine-rich repeat (L 99.2 7.1E-12 1.5E-16 131.3 0.7 172 365-582 80-252 (722)
22 PRK15370 E3 ubiquitin-protein 99.1 7.8E-11 1.7E-15 133.4 8.8 145 426-582 222-385 (754)
23 PRK15387 E3 ubiquitin-protein 99.1 1.7E-10 3.6E-15 130.2 10.7 145 423-581 241-419 (788)
24 KOG0618 Serine/threonine phosp 99.1 2.7E-12 5.8E-17 141.1 -6.1 158 424-585 241-428 (1081)
25 PLN03210 Resistant to P. syrin 99.0 2.5E-09 5.5E-14 128.5 12.3 158 423-582 656-888 (1153)
26 cd00116 LRR_RI Leucine-rich re 98.9 7.8E-10 1.7E-14 114.1 4.2 148 425-579 109-293 (319)
27 PLN03210 Resistant to P. syrin 98.8 1.5E-08 3.2E-13 122.0 12.8 154 424-582 611-821 (1153)
28 cd00116 LRR_RI Leucine-rich re 98.8 2.7E-09 5.9E-14 110.1 3.8 148 423-577 80-263 (319)
29 KOG1259 Nischarin, modulator o 98.8 1.2E-09 2.5E-14 106.6 -0.3 130 426-581 286-416 (490)
30 KOG0532 Leucine-rich repeat (L 98.7 1.6E-09 3.5E-14 113.9 -0.1 175 335-548 76-251 (722)
31 COG4886 Leucine-rich repeat (L 98.7 2.1E-08 4.5E-13 107.1 5.7 153 426-583 118-296 (394)
32 PF14580 LRR_9: Leucine-rich r 98.7 2.7E-08 5.8E-13 92.9 5.2 104 425-543 20-126 (175)
33 PF14580 LRR_9: Leucine-rich r 98.6 3.8E-08 8.2E-13 91.9 5.9 111 444-578 15-127 (175)
34 PF13855 LRR_8: Leucine rich r 98.4 2.2E-07 4.8E-12 71.1 3.7 58 449-507 2-61 (61)
35 KOG4237 Extracellular matrix p 98.4 1.3E-07 2.9E-12 95.8 1.7 95 429-528 51-148 (498)
36 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.7E-12 97.1 1.1 149 421-581 143-318 (505)
37 KOG1259 Nischarin, modulator o 98.3 8.6E-08 1.9E-12 93.8 -0.6 118 410-544 293-413 (490)
38 COG4886 Leucine-rich repeat (L 98.3 7E-07 1.5E-11 95.3 5.7 148 428-581 97-272 (394)
39 PF13855 LRR_8: Leucine rich r 98.3 4.3E-07 9.2E-12 69.5 2.4 59 425-483 2-61 (61)
40 KOG0531 Protein phosphatase 1, 97.9 4.8E-06 1E-10 89.5 2.2 150 424-580 95-271 (414)
41 KOG4579 Leucine-rich repeat (L 97.8 2.3E-06 5E-11 74.9 -1.6 89 426-518 29-122 (177)
42 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.1E-10 56.0 3.1 40 471-512 1-40 (44)
43 KOG3207 Beta-tubulin folding c 97.8 3.1E-06 6.8E-11 87.1 -1.5 147 423-579 120-286 (505)
44 KOG4579 Leucine-rich repeat (L 97.8 3.1E-06 6.6E-11 74.1 -1.8 115 425-553 54-169 (177)
45 KOG1859 Leucine-rich repeat pr 97.7 8E-07 1.7E-11 96.3 -7.8 102 426-544 166-268 (1096)
46 KOG1859 Leucine-rich repeat pr 97.7 3.9E-06 8.5E-11 91.1 -2.9 117 449-580 165-295 (1096)
47 KOG1909 Ran GTPase-activating 97.6 3E-05 6.6E-10 77.9 2.1 151 425-576 93-310 (382)
48 KOG0531 Protein phosphatase 1, 97.5 1.4E-05 3.1E-10 85.8 -1.5 149 425-580 73-248 (414)
49 KOG1909 Ran GTPase-activating 97.5 2E-05 4.3E-10 79.2 -0.9 84 425-508 31-133 (382)
50 KOG2982 Uncharacterized conser 97.3 0.00011 2.4E-09 72.4 2.7 80 426-505 73-156 (418)
51 PF12799 LRR_4: Leucine Rich r 97.3 0.00014 3E-09 51.5 1.9 35 426-461 3-37 (44)
52 KOG4658 Apoptotic ATPase [Sign 97.1 0.00023 5.1E-09 82.6 2.6 103 424-528 545-650 (889)
53 COG5238 RNA1 Ran GTPase-activa 97.0 0.00035 7.5E-09 68.2 2.4 18 561-578 211-228 (388)
54 KOG1644 U2-associated snRNP A' 96.9 0.0012 2.6E-08 61.9 4.9 77 427-508 22-101 (233)
55 PRK15386 type III secretion pr 96.8 0.0045 9.7E-08 65.2 8.2 121 425-558 53-187 (426)
56 PRK15386 type III secretion pr 96.8 0.0039 8.5E-08 65.6 7.8 118 443-574 47-187 (426)
57 KOG2982 Uncharacterized conser 96.6 0.00061 1.3E-08 67.3 0.4 131 426-557 47-182 (418)
58 KOG4658 Apoptotic ATPase [Sign 96.5 0.0015 3.3E-08 76.0 2.6 83 423-506 570-653 (889)
59 KOG2120 SCF ubiquitin ligase, 96.2 0.00025 5.5E-09 70.0 -4.7 147 425-572 186-371 (419)
60 KOG1644 U2-associated snRNP A' 96.0 0.0079 1.7E-07 56.6 4.2 80 425-508 43-126 (233)
61 KOG2739 Leucine-rich acidic nu 96.0 0.0025 5.4E-08 62.1 1.0 38 471-508 65-104 (260)
62 PF08263 LRRNT_2: Leucine rich 95.7 0.016 3.6E-07 40.6 3.9 39 376-416 2-43 (43)
63 KOG3665 ZYG-1-like serine/thre 95.7 0.0032 6.9E-08 71.5 0.3 113 422-544 146-264 (699)
64 KOG3665 ZYG-1-like serine/thre 95.6 0.0041 8.8E-08 70.7 0.7 101 425-528 123-228 (699)
65 KOG2120 SCF ubiquitin ligase, 95.2 0.002 4.3E-08 63.8 -3.0 56 449-504 186-243 (419)
66 COG5238 RNA1 Ran GTPase-activa 94.8 0.028 6E-07 55.3 3.8 148 423-578 91-286 (388)
67 PF00560 LRR_1: Leucine Rich R 94.8 0.013 2.8E-07 34.6 1.0 19 473-492 2-20 (22)
68 KOG2739 Leucine-rich acidic nu 94.7 0.02 4.4E-07 56.0 2.6 95 426-525 45-148 (260)
69 KOG3593 Predicted receptor-lik 94.7 0.02 4.2E-07 56.2 2.5 122 14-142 44-173 (355)
70 PF00560 LRR_1: Leucine Rich R 92.7 0.042 9.1E-07 32.4 0.4 18 497-515 2-19 (22)
71 PF13504 LRR_7: Leucine rich r 92.5 0.069 1.5E-06 29.4 1.1 16 565-580 2-17 (17)
72 KOG0473 Leucine-rich repeat pr 91.8 0.0064 1.4E-07 58.3 -5.9 83 424-509 42-125 (326)
73 KOG2123 Uncharacterized conser 91.7 0.007 1.5E-07 59.5 -5.9 84 425-513 20-106 (388)
74 PF13504 LRR_7: Leucine rich r 90.0 0.2 4.3E-06 27.6 1.3 7 475-481 5-11 (17)
75 smart00369 LRR_TYP Leucine-ric 90.0 0.22 4.8E-06 30.5 1.7 22 563-584 1-22 (26)
76 smart00370 LRR Leucine-rich re 90.0 0.22 4.8E-06 30.5 1.7 22 563-584 1-22 (26)
77 smart00369 LRR_TYP Leucine-ric 88.7 0.41 8.8E-06 29.3 2.3 22 494-516 1-22 (26)
78 smart00370 LRR Leucine-rich re 88.7 0.41 8.8E-06 29.3 2.3 22 494-516 1-22 (26)
79 KOG2123 Uncharacterized conser 87.7 0.051 1.1E-06 53.7 -3.4 75 424-501 41-123 (388)
80 smart00364 LRR_BAC Leucine-ric 86.5 0.46 1E-05 29.2 1.5 21 564-584 2-22 (26)
81 KOG0473 Leucine-rich repeat pr 85.5 0.021 4.4E-07 54.9 -7.3 84 441-528 35-119 (326)
82 KOG3593 Predicted receptor-lik 84.9 0.58 1.3E-05 46.2 2.1 65 261-327 107-173 (355)
83 PF13306 LRR_5: Leucine rich r 79.1 4.5 9.7E-05 35.0 5.6 87 425-517 13-101 (129)
84 PF13516 LRR_6: Leucine Rich r 74.9 1.1 2.3E-05 26.8 0.2 14 495-508 2-15 (24)
85 KOG4308 LRR-containing protein 74.4 0.065 1.4E-06 58.4 -9.1 82 426-507 89-184 (478)
86 smart00365 LRR_SD22 Leucine-ri 70.5 3.4 7.4E-05 25.5 1.7 16 564-579 2-17 (26)
87 KOG3864 Uncharacterized conser 67.3 0.8 1.7E-05 43.4 -2.3 80 425-504 102-185 (221)
88 KOG4308 LRR-containing protein 62.8 0.16 3.5E-06 55.3 -9.1 84 425-508 145-246 (478)
89 PF13306 LRR_5: Leucine rich r 61.7 13 0.00029 32.0 4.6 87 425-517 36-123 (129)
90 KOG2230 Predicted beta-mannosi 57.2 2E+02 0.0043 31.9 12.8 117 244-366 32-159 (867)
91 KOG3763 mRNA export factor TAP 52.1 7.6 0.00017 42.3 1.5 35 424-458 218-254 (585)
92 smart00368 LRR_RI Leucine rich 48.3 15 0.00032 22.9 1.8 13 449-461 3-15 (28)
93 PF08194 DIM: DIM protein; In 32.5 26 0.00055 23.5 1.1 13 1-13 1-13 (36)
94 KOG1947 Leucine rich repeat pr 27.4 23 0.00049 38.2 0.3 86 423-508 213-308 (482)
95 KOG3763 mRNA export factor TAP 27.2 33 0.00071 37.7 1.5 63 446-511 216-286 (585)
96 PF14299 PP2: Phloem protein 2 25.9 4E+02 0.0088 24.1 8.3 98 76-181 39-153 (154)
97 PF07172 GRP: Glycine rich pro 25.6 53 0.0011 27.4 2.1 19 5-23 3-21 (95)
98 PF03422 CBM_6: Carbohydrate b 22.4 4.8E+02 0.01 22.1 9.1 38 86-128 30-68 (125)
99 PF15240 Pro-rich: Proline-ric 22.0 62 0.0013 30.2 2.0 21 10-30 2-22 (179)
100 PRK06764 hypothetical protein; 20.3 88 0.0019 25.2 2.3 20 89-108 73-92 (105)
No 1
>PLN03150 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-84 Score=725.09 Aligned_cols=499 Identities=37% Similarity=0.644 Sum_probs=410.5
Q ss_pred HHHHHHHhhhhhhccCCCCCcEEEccCCCCCC-cCCCCceEeeCCCceecCCcccccCCCCCCCCCCceeeeeCCCCCCC
Q 007860 11 FLSLLLVLPLSLASSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKK 89 (587)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~i~cG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~~~~ 89 (587)
+|.+-++++...+++.+.+++|+||||++++. +|.++|+|++|..+ ++|.......+ ....++|+|+|+||..+|++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~ 82 (623)
T PLN03150 5 LLAASALLAVLASLASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDGPE 82 (623)
T ss_pred HHHHHHHHHhhcccccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccccc
Confidence 33333333333444444677899999999876 67889999997443 44433322223 23457799999999777889
Q ss_pred cceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEeeCCC
Q 007860 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (587)
Q Consensus 90 ~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~~~~ 169 (587)
+||+||+.++|+|+||+||+|||||+.++.|.|||++|++.|.+....+.. ....++||++++++++.++|||+|++.
T Consensus 83 ~cY~~~~~~~g~ylVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~ 160 (623)
T PLN03150 83 NCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGH 160 (623)
T ss_pred cceEeeecCCCcEEEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCC
Confidence 999999989999999999999999998788999999999664443222221 234688999999999999999999988
Q ss_pred CCceeeeEEeEecCCCCccccC-cCccceEeeeeeccCCCCCCCCCCCCCCCCC--CcccccCCCCCCCCCCCCceeeec
Q 007860 170 DPPVIASLEVQQIDPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTT 246 (587)
Q Consensus 170 ~~pfIn~iEi~~l~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~--~R~W~~d~~~~~~~~~~~~~~~~t 246 (587)
++|||||||||++|+.+|.... .+++.+|+++||+||||......++|+||++ ||+|.+|++|..+ .+..+++
T Consensus 161 ~~pFIs~iEv~~l~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st 236 (623)
T PLN03150 161 GDPAILSIEILQVDDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAIST 236 (623)
T ss_pred CCCceeEEEEEEcCcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----ccccccc
Confidence 9999999999999999996432 2456679999999999986555578999999 9999999887632 2456677
Q ss_pred cccccCCCCCCCCchHHHHHhhhccc---cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCc-cccccce
Q 007860 247 RERITNTNQPPNYYPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDI 322 (587)
Q Consensus 247 ~~~i~~~~~~~~~~P~~Vy~Ta~~~~---~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di 322 (587)
...|+++..+|+.+|+.||||||++. .+++|.|++++++.|+|||||||++......++|+|+|++||+ ...++|+
T Consensus 237 ~~~I~~~~~~~~~~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di 316 (623)
T PLN03150 237 ENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDI 316 (623)
T ss_pred ccccccccCCCccChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccCh
Confidence 77788766667889999999999984 4799999999999999999999998544556899999999998 6778898
Q ss_pred ecccCC-cceeeeeeeEeecCCccEEEEEcccchh-hhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCC
Q 007860 323 FNSVGS-FAAYSWHYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGD 400 (587)
Q Consensus 323 ~~~~~~-~~~~~~~l~~l~l~~n~L~~~l~~~~~s-~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~ 400 (587)
....++ ..+.++.+.+. ..++.|++++.|..++ |+|||+|||++.+.+..+.++|+.+|+.+|..+..+...+|.|+
T Consensus 317 ~~~~g~~~~~~~~~~~v~-~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~ 395 (623)
T PLN03150 317 VKMSGERYTALVLNKTVA-VSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGD 395 (623)
T ss_pred hhhcCCcccceEEEeEEe-ecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCC
Confidence 776665 45666655543 3457899999998776 89999999999998888999999999999998865544589999
Q ss_pred CCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860 401 PCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (587)
Q Consensus 401 pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls 479 (587)
||.|.. |.|.|+.|..........++.|+|++|.+.|.+|..++.|++|+.|+|++|.+.|.+|..++. ++|+.|+|+
T Consensus 396 ~C~p~~-~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs 474 (623)
T PLN03150 396 PCVPQQ-HPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS 474 (623)
T ss_pred CCCCcc-cccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC
Confidence 998765 689999996433222346899999999999999999999999999999999999999999999 999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc
Q 007860 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519 (587)
Q Consensus 480 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~ 519 (587)
+|+++|.+|+.++++++|+.|+|++|+++|.+|..++...
T Consensus 475 ~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~ 514 (623)
T PLN03150 475 YNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514 (623)
T ss_pred CCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhcc
Confidence 9999999999999999999999999999999999987653
No 2
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=100.00 E-value=6e-59 Score=482.73 Aligned_cols=319 Identities=27% Similarity=0.477 Sum_probs=243.1
Q ss_pred EccCCCCCC---cC-CCCceEeeCCCceecCCcccccC----CCCCCCCCCceeeeeCCCCCCCcceEeecC--CCceEE
Q 007860 34 IDCGSATST---TD-PFNTTWQADDRYYTSGATSIVSE----PLHFRFPHEKTLRYFPPSSGKKNCYIIPNL--PPGRYY 103 (587)
Q Consensus 34 i~cG~~~~~---~d-~~~~~w~~Dd~~~~~g~~~~~~~----~~~~~~~~y~t~R~f~~~~~~~~~Y~~pv~--~~~~yl 103 (587)
||||++.+. +| .+||+|++|++|+.+|.+..++. ......++|+|+|+|| +|.|+||+||+. .+++||
T Consensus 1 IdCG~~~~~s~y~D~~tg~~~~~D~~~~~~g~~~~i~~~~~~~~~~~~~~y~taR~F~--~g~r~cY~l~~~~~~~~~yl 78 (347)
T PF12819_consen 1 IDCGSSSNSSSYVDDSTGRTWVSDDDFIDTGKSGNISSQPDSSSSDSSPPYQTARIFP--EGSRNCYTLPVTPPGGGKYL 78 (347)
T ss_pred CcCCCCCCCcccccCCCCcEEeCCCCcccCCCccccccccCCcCCccccccceEEEcC--CCCccEEEeeccCCCCceEE
Confidence 799998764 44 56999999998888777655422 1234468999999999 477899999997 345999
Q ss_pred EEEEeecCCCCCCC-----CCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEec-CCeeEEEEeeCCCCC-ceeee
Q 007860 104 IRTFTVYDNYDGKS-----HSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVK-DGELDLCFYSFATDP-PVIAS 176 (587)
Q Consensus 104 vRl~F~~~n~~~~~-----~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~-~~~l~i~~~~~~~~~-pfIn~ 176 (587)
|||||+|||||+++ +++.|||++|++.+.+.. .......++++|+++.+. ++.|.|||+|++.|. |||||
T Consensus 79 iRl~F~~gnyd~~~fs~~~~~~~FdL~~~~n~~~tV~---~~~~~~~~~~~E~ii~v~~~~~l~vclv~~~~g~~pFIsa 155 (347)
T PF12819_consen 79 IRLHFYYGNYDGLNFSVSSSPPTFDLLLGFNFWSTVN---LSNSPSSPVVKEFIINVTWSDTLSVCLVPTGSGTFPFISA 155 (347)
T ss_pred EEEEeccccccccccccccCCcceEEEECCceeEEEE---ecCCCcceEEEEEEEEEcCCCcEEEEEEeCCCCCCCceeE
Confidence 99999999999863 257799999999854422 111112468999988888 799999999999776 99999
Q ss_pred EEeEecCCCCccccCcCccceEeeeeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeeecccccc-CCCC
Q 007860 177 LEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT-NTNQ 255 (587)
Q Consensus 177 iEi~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~t~~~i~-~~~~ 255 (587)
||||+||+.+|+.....++.+|++++|+|||+.. ..+||++|++||+|.++.. ...+..+++..+|+ ....
T Consensus 156 iEl~~lp~~ly~~~~~~~s~~L~~~~R~n~G~~~--~~iryp~D~~dR~W~~~~~------~~~~~~ist~~~i~~~~~~ 227 (347)
T PF12819_consen 156 IELRPLPDSLYPDTDANSSQALETVYRLNVGGSS--SFIRYPDDTYDRIWQPYSS------SPGWSNISTTSNININSSN 227 (347)
T ss_pred EEEEECCccceeccccCCCceeEEEEeecCCCcc--cccCCCCCcceeecccccc------CccccccccceeeecccCC
Confidence 9999999999954333567889999999999864 1278999999999996521 12466777766676 3344
Q ss_pred CCCCchHHHHHhhhccc-----cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccccccceec-ccCC-
Q 007860 256 PPNYYPMKLYQTAIVSS-----GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN-SVGS- 328 (587)
Q Consensus 256 ~~~~~P~~Vy~Ta~~~~-----~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~~-~~~~- 328 (587)
+++.||.+|||||+++. .+++|.+ ++++..|+||||||||+......++|+|+|+|||+.... ++.. ..+.
T Consensus 228 ~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~-~~~~~~~~~~ 305 (347)
T PF12819_consen 228 NPYDAPSAVYQTARTPSNSSDPLNLTWSF-VDPGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYS-DVSPPYLGAD 305 (347)
T ss_pred ccCcChHHHHHhhhcccccccceEEEecc-CCCCccEEEEEEEeecccccCCCCeEEEEEEECCeEccC-ccCcccccCc
Confidence 56779999999999992 3688888 889999999999999997655556899999999995433 4433 2222
Q ss_pred cceeeeeeeEeecCCccEEEEEcccchh---hhhhccccccc
Q 007860 329 FAAYSWHYVAKNLSSTELTVKLVPVVGA---ALISGLENYAL 367 (587)
Q Consensus 329 ~~~~~~~l~~l~l~~n~L~~~l~~~~~s---~~Ln~lei~~~ 367 (587)
..+.+.++.+....+..+.++|.+..++ |+|||+|||++
T Consensus 306 ~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppiLNalEIy~v 347 (347)
T PF12819_consen 306 TVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPILNALEIYKV 347 (347)
T ss_pred ceEeecceEEEecCCCEEEEEEEeCCCCCcCceeEeeeeEeC
Confidence 3444544544433445788899988776 99999999975
No 3
>PLN03150 hypothetical protein; Provisional
Probab=99.91 E-value=3.2e-23 Score=231.78 Aligned_cols=319 Identities=18% Similarity=0.256 Sum_probs=200.5
Q ss_pred cEEEccCCCCCC--cCC----C--CceEeeCCCceecCC-----ccccc----CCCCCCCCCCceeeeeCCCCCCCcceE
Q 007860 31 SYRIDCGSATST--TDP----F--NTTWQADDRYYTSGA-----TSIVS----EPLHFRFPHEKTLRYFPPSSGKKNCYI 93 (587)
Q Consensus 31 ~~~i~cG~~~~~--~d~----~--~~~w~~Dd~~~~~g~-----~~~~~----~~~~~~~~~y~t~R~f~~~~~~~~~Y~ 93 (587)
.+|||||+++.. .|. - .|.|.+|+.|..+.. ...+. .+..+|..+|+|||.+... ....+|+
T Consensus 193 ~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~~~~~~st~~~I~~~~~~~~~~P~~VyqTA~~~~~~-~~~lty~ 271 (623)
T PLN03150 193 AKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSGSDQAISTENVIKKASNAPNFYPESLYQSALVSTDT-QPDLSYT 271 (623)
T ss_pred EEEEEecCcccccccCCCCCcccCccccCcCcccCCCcccccccccccccccCCCccChHHHhhhhccccCC-CCceEEE
Confidence 379999987432 222 2 699999876543211 11111 1233466799999998752 2456999
Q ss_pred eecCCCceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEecCCCCcccc-CCCceEEEEEEEecCCeeEEEEeeCCCCC
Q 007860 94 IPNLPPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGL-ARDGAYSDLFAFVKDGELDLCFYSFATDP 171 (587)
Q Consensus 94 ~pv~~~~~ylvRl~F~~~n~~-~~~~~~~F~v~~~~~~~l~~~~~~~~~~-~~~~~~~e~i~~~~~~~l~i~~~~~~~~~ 171 (587)
|++++++.|+|||||..-... .....++|+|++||+.+++.+|+....+ ...++++++.+.+.++.+.|+|+|.....
T Consensus 272 ~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~~~~v~~~~g~l~isl~p~~~s~ 351 (623)
T PLN03150 272 MDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVAVSGRTLTIVLQPKKGTH 351 (623)
T ss_pred eecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEEEeEEeecCCeEEEEEeeCCCCc
Confidence 999888999999999643211 1224789999999999999998744322 24578899988888888999999987667
Q ss_pred ceeeeEEeEecCCCCccccCcCccceEeeeeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeeecccccc
Q 007860 172 PVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERIT 251 (587)
Q Consensus 172 pfIn~iEi~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~t~~~i~ 251 (587)
|+||||||+++...-..+. ..+..+|..+.. ..+ +...--|.+|.
T Consensus 352 pilNaiEI~~~~~~~~~t~-~~~~~aL~~~k~-~~~------------~~~~~~W~g~~--------------------- 396 (623)
T PLN03150 352 AIINAIEVFEIITAESKTL-LEEVSALQTLKS-SLG------------LPLRFGWNGDP--------------------- 396 (623)
T ss_pred ceeeeeeeeeccccccccC-chHHHHHHHHHH-hcC------------CcccCCCCCCC---------------------
Confidence 9999999998764211100 001111111100 000 00000121110
Q ss_pred CCCCCCCCchHHHHHhhhccccceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccccccceecccCCcce
Q 007860 252 NTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAA 331 (587)
Q Consensus 252 ~~~~~~~~~P~~Vy~Ta~~~~~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l~~~di~~~~~~~~~ 331 (587)
.. |.. +.|. + | - |.+.. .. +
T Consensus 397 ---C~----p~~-------------~~w~---G----v--~-C~~~~---~~-----------------------~---- 416 (623)
T PLN03150 397 ---CV----PQQ-------------HPWS---G----A--D-CQFDS---TK-----------------------G---- 416 (623)
T ss_pred ---CC----Ccc-------------cccc---c----c--e-eeccC---CC-----------------------C----
Confidence 00 000 0000 0 0 0 10000 00 0
Q ss_pred eeeeeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcc
Q 007860 332 YSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (587)
Q Consensus 332 ~~~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~ 411 (587)
......++++++.+.+.+|+.++
T Consensus 417 -~~~v~~L~L~~n~L~g~ip~~i~-------------------------------------------------------- 439 (623)
T PLN03150 417 -KWFIDGLGLDNQGLRGFIPNDIS-------------------------------------------------------- 439 (623)
T ss_pred -ceEEEEEECCCCCccccCCHHHh--------------------------------------------------------
Confidence 00122334455544322221111
Q ss_pred ceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcc
Q 007860 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (587)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~ 490 (587)
.+.+|+.|+|++|.+.|.+|..++.|++|+.|+|++|+++|.+|+.++. ++|+.|+|++|+++|.+|..
T Consensus 440 ----------~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 440 ----------KLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred ----------CCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChH
Confidence 0124778999999999999999999999999999999999999999999 99999999999999999998
Q ss_pred ccCC-CCCCEEEccCCcCcccCc
Q 007860 491 LTSS-SKLQLVLLNNNLLEGRVP 512 (587)
Q Consensus 491 l~~l-~~L~~L~Ls~N~l~g~ip 512 (587)
++.+ .++..+++.+|......|
T Consensus 510 l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred HhhccccCceEEecCCccccCCC
Confidence 8764 467889999987654444
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.76 E-value=5e-18 Score=201.39 Aligned_cols=193 Identities=30% Similarity=0.448 Sum_probs=118.6
Q ss_pred CchHHHHHHHHHHHhcCCCC--CCCCCC-CCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCC
Q 007860 374 TVPEQVIAMRALKESLRVPD--RMGWNG-DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNL 450 (587)
Q Consensus 374 ~~p~~~~aL~~lk~~~~~~~--~~~w~g-~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L 450 (587)
..|+|..+|+++|..+..+. ..+|+. +.| |.|.|+.|... .+++.|+|++|+++|.++..+..+++|
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~-----c~w~gv~c~~~-----~~v~~L~L~~~~i~~~~~~~~~~l~~L 95 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNSSADV-----CLWQGITCNNS-----SRVVSIDLSGKNISGKISSAIFRLPYI 95 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCCCCCC-----CcCcceecCCC-----CcEEEEEecCCCccccCChHHhCCCCC
Confidence 36789999999999875432 246853 455 79999999742 257778888888887777777788888
Q ss_pred CEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCC----------------------ccccCCCCCCEEEccCCc
Q 007860 451 VNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIP----------------------DSLTSSSKLQLVLLNNNL 506 (587)
Q Consensus 451 ~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP----------------------~~l~~l~~L~~L~Ls~N~ 506 (587)
+.|+|++|+++|.+|..+. . ++|++|+|++|+++|.+| ..++.+++|++|+|++|.
T Consensus 96 ~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 96 QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred CEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 8888888887777777655 3 666666666666655544 444444555555555555
Q ss_pred CcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc------
Q 007860 507 LEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY------ 560 (587)
Q Consensus 507 l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i------ 560 (587)
+.+.+|..++++. +|+.|+|+ +.+|++|+|++|++.+.+| .+|+.|++++|++
T Consensus 176 l~~~~p~~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~ 254 (968)
T PLN00113 176 LVGKIPNSLTNLT-SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS 254 (968)
T ss_pred ccccCChhhhhCc-CCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh
Confidence 5444454444443 34444443 3344555555555544444 2344444555543
Q ss_pred --CCCCCCcEEEccCCCCC
Q 007860 561 --QRQKSLMLLEMESQHAK 577 (587)
Q Consensus 561 --~~l~~L~~L~Ls~N~l~ 577 (587)
..+++|+.|+|++|+++
T Consensus 255 ~l~~l~~L~~L~L~~n~l~ 273 (968)
T PLN00113 255 SLGNLKNLQYLFLYQNKLS 273 (968)
T ss_pred hHhCCCCCCEEECcCCeee
Confidence 33445555555555554
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=2.2e-19 Score=187.53 Aligned_cols=239 Identities=20% Similarity=0.249 Sum_probs=141.7
Q ss_pred eEeecCCccEE-EEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCC-CC----CCCCCCCCCCcCc
Q 007860 337 VAKNLSSTELT-VKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRM-GW----NGDPCAPTNWDAW 410 (587)
Q Consensus 337 ~~l~l~~n~L~-~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~-~w----~g~pc~~~~~~~~ 410 (587)
+-+++++|.++ ..+|..... +..+..+++....+..+|+++.++.++.+.-...++. .- +.-||.......-
T Consensus 10 rGvDfsgNDFsg~~FP~~v~q--Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~ 87 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQ--MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRD 87 (1255)
T ss_pred ecccccCCcCCCCcCchhHHH--hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhc
Confidence 34566788877 467766665 7788889998888999999999999998754433321 00 1112211000000
Q ss_pred cceeec--CCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCcc
Q 007860 411 EGITCH--PNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGS 486 (587)
Q Consensus 411 ~gv~c~--~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~ 486 (587)
..+.-+ +...-.+..|+.|||++|++. ..|..+..-+++-.|+||+|+|. +||..+.- ..|-.||||+|+|. .
T Consensus 88 N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 88 NNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred cccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-h
Confidence 000000 001112234555666666665 55555555566666666666665 55555443 55556666666665 5
Q ss_pred CCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCccccccc----
Q 007860 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLP---- 547 (587)
Q Consensus 487 iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p---- 547 (587)
+|+.+..|..|+.|+|++|.+.-.--..+-.+. +|+.|.++ +.+|..++||.|++. .+|
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmt-sL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly 242 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMT-SLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY 242 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccch-hhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh
Confidence 555566666666666666655310000011111 23333333 677888899999887 666
Q ss_pred --ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCC
Q 007860 548 --QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 548 --~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
.+|..|+|+.|+| ..|.+|+.|+||+|+|+.+|..
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~a 286 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDA 286 (1255)
T ss_pred hhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHH
Confidence 5688889999988 4577899999999999999974
No 6
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.71 E-value=1.1e-17 Score=156.72 Aligned_cols=141 Identities=29% Similarity=0.397 Sum_probs=91.1
Q ss_pred cEEEccCCCCCCcCCCCceEeeCCCceecCCcc------------cc--cCCCCCCCCCCceeeeeCCCCCCCcceEeec
Q 007860 31 SYRIDCGSATSTTDPFNTTWQADDRYYTSGATS------------IV--SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPN 96 (587)
Q Consensus 31 ~~~i~cG~~~~~~d~~~~~w~~Dd~~~~~g~~~------------~~--~~~~~~~~~~y~t~R~f~~~~~~~~~Y~~pv 96 (587)
.++||||++.. +|..|..|.+| .++.+|... .. +...+..+.+|+|.|+-+. .+.|.||+
T Consensus 2 ~~~IN~Gg~~~-~~~~g~~w~~D-~~~~~g~~~y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~----~f~Y~ip~ 75 (174)
T PF11721_consen 2 VLRINAGGPAY-TDSSGIVWEAD-QYYTGGSWGYYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPS----SFSYDIPV 75 (174)
T ss_dssp EEEEEETSSSE-EETTTEEE-SS-SSSTTSS-----------SSTTS--TTS-HHHHHTTT-----SS----SEEEEEE-
T ss_pred EEEEECCCCcc-cCCCCCEEcCC-CCCCCCCcccccccccccccccccccccCCCchhhhHhhcCCCC----ceEEEEec
Confidence 47999999865 77889999995 444433330 00 1111233579999999764 28999997
Q ss_pred CCCceEEEEEEeecCCCCC-----CCCCCceEEEECCEEEEecCCCCccccCCC-ceEEEE-EEEecCCeeEEEEee---
Q 007860 97 LPPGRYYIRTFTVYDNYDG-----KSHSPSFDVSVEGTLVFSWRSPWPEGLARD-GAYSDL-FAFVKDGELDLCFYS--- 166 (587)
Q Consensus 97 ~~~~~ylvRl~F~~~n~~~-----~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~-~~~~e~-i~~~~~~~l~i~~~~--- 166 (587)
.+.|.|.|||||....+.. ....++|||+++|+.++++||++.+++... ++++++ -+.+.++.|.|+|..
T Consensus 76 ~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~~~~~ 155 (174)
T PF11721_consen 76 VPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFVWAGK 155 (174)
T ss_dssp -S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEEEE--
T ss_pred CCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEEecCC
Confidence 7999999999995332222 123789999999999999999988776655 777887 556799999999995
Q ss_pred --------CCCCCceeeeE
Q 007860 167 --------FATDPPVIASL 177 (587)
Q Consensus 167 --------~~~~~pfIn~i 177 (587)
...+.|.||||
T Consensus 156 ~~~~i~~~~~~~~p~IsaI 174 (174)
T PF11721_consen 156 GTLCIPFIGSYGNPLISAI 174 (174)
T ss_dssp SEEEEEEESSSSSSSEEEE
T ss_pred CcEEeeccccCCCcEEeeC
Confidence 44566888887
No 7
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.69 E-value=5.6e-17 Score=192.41 Aligned_cols=247 Identities=25% Similarity=0.280 Sum_probs=185.3
Q ss_pred eeEEEEEECCccccccceecccCCcceeeeeeeEeecCCccEEEEEcccch-hhhhhcccccccccCCC-CCchHHHHHH
Q 007860 305 QRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVG-AALISGLENYALVPNDL-STVPEQVIAM 382 (587)
Q Consensus 305 ~r~F~V~in~~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~-s~~Ln~lei~~~~~~~~-~~~p~~~~aL 382 (587)
.|+-.+.+.++.+.+.. .........++.+++++|++.+.+|.... . +..++.+.+..+.+ +.+|. ..+
T Consensus 69 ~~v~~L~L~~~~i~~~~-----~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~--l~~L~~L~Ls~n~l~~~~p~--~~l 139 (968)
T PLN00113 69 SRVVSIDLSGKNISGKI-----SSAIFRLPYIQTINLSNNQLSGPIPDDIFTT--SSSLRYLNLSNNNFTGSIPR--GSI 139 (968)
T ss_pred CcEEEEEecCCCccccC-----ChHHhCCCCCCEEECCCCccCCcCChHHhcc--CCCCCEEECcCCccccccCc--ccc
Confidence 46666666665544321 11112234678889999999888887654 3 67788888877764 34443 112
Q ss_pred HHHHHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCC
Q 007860 383 RALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGG 462 (587)
Q Consensus 383 ~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g 462 (587)
..++.... .++ ...+. .+.....+.+|+.|+|++|.+.+.+|..++++++|++|+|++|.+.+
T Consensus 140 ~~L~~L~L-----s~n----------~~~~~--~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~ 202 (968)
T PLN00113 140 PNLETLDL-----SNN----------MLSGE--IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG 202 (968)
T ss_pred CCCCEEEC-----cCC----------ccccc--CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC
Confidence 22222111 111 11110 01112334578999999999999999999999999999999999999
Q ss_pred CCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-------------
Q 007860 463 TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS------------- 528 (587)
Q Consensus 463 ~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------- 528 (587)
.+|..++. ++|++|+|++|++++.+|..++.+++|++|++++|++.+.+|..++.+. +|+.|+++
T Consensus 203 ~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~p~~l~ 281 (968)
T PLN00113 203 QIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK-NLQYLFLYQNKLSGPIPPSIF 281 (968)
T ss_pred cCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC-CCCEEECcCCeeeccCchhHh
Confidence 99999999 9999999999999999999999999999999999999999999998876 58988887
Q ss_pred -ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCC
Q 007860 529 -VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 529 -l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~ 578 (587)
+.+|+.|+|++|.+.+.+| ++|+.|++++|.+ ..+++|+.|+|++|++++
T Consensus 282 ~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~ 346 (968)
T PLN00113 282 SLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346 (968)
T ss_pred hccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcC
Confidence 5678999999999988777 3677788988876 467889999999999985
No 8
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan [. This entry represents a malectin domain, and can also be found in probable receptor-like serine/threonine-protein kinases from plants [] and in proteins described as glycoside hydrolases. ; PDB: 2KR2_A 2JWP_A 2K46_A.
Probab=99.63 E-value=1.5e-16 Score=149.08 Aligned_cols=141 Identities=24% Similarity=0.397 Sum_probs=85.4
Q ss_pred eeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeee-c--cccccCCCCCCCCchHHHHHhhhccccceEE
Q 007860 201 YGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVT-T--RERITNTNQPPNYYPMKLYQTAIVSSGAIQY 277 (587)
Q Consensus 201 ~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~-t--~~~i~~~~~~~~~~P~~Vy~Ta~~~~~~lt~ 277 (587)
++||||||.. + +|..++.|.+|+.|..+.+. ...+ . ..........+...+..+|||+|.....++|
T Consensus 2 ~~~IN~Gg~~------~-~~~~g~~w~~D~~~~~g~~~---y~~~~~~~~~~~~~~~~i~~t~d~~Lyqt~R~g~~~f~Y 71 (174)
T PF11721_consen 2 VLRINAGGPA------Y-TDSSGIVWEADQYYTGGSWG---YYVSSDNNGSTSSTNSSIPGTTDDPLYQTERYGPSSFSY 71 (174)
T ss_dssp EEEEEETSSS------E-EETTTEEE-SSSSSTTSS--------------SSTTS--TTS-HHHHHTTT-----SSSEEE
T ss_pred EEEEECCCCc------c-cCCCCCEEcCCCCCCCCCcc---cccccccccccccccccccCCCchhhhHhhcCCCCceEE
Confidence 5899999875 3 57789999999988754430 0000 0 0001111122233567999999985447999
Q ss_pred EEecCCCCcEEEEEEeeecccCC----CCCceeEEEEEECCc-cccccceecccCCcc-eeeeeeeEeecCCccEEEEEc
Q 007860 278 NLAVDAKLDYLIWFHFAEIDSSV----TKAGQRVFDILVNDK-NVTRVDIFNSVGSFA-AYSWHYVAKNLSSTELTVKLV 351 (587)
Q Consensus 278 ~~~v~~~~~y~v~lhF~ei~~~~----~~~~~r~F~V~in~~-~l~~~di~~~~~~~~-~~~~~l~~l~l~~n~L~~~l~ 351 (587)
.+|+.+++.|.|+|||||+.... ...++|+|||+|||+ .++++||+..+|... +....+......++.|.+.|.
T Consensus 72 ~ip~~~~G~Y~V~L~FaE~~~~~~~~~~~~G~RvFdV~v~g~~vl~~~Di~~~~G~~~~~~~~~~~~v~v~dg~L~i~f~ 151 (174)
T PF11721_consen 72 DIPVVPNGTYTVRLHFAELYFGASGGASGPGQRVFDVYVNGETVLKNFDIYAEAGGFNKAAVRRFFNVTVTDGTLNIQFV 151 (174)
T ss_dssp EEE--S-EEEEEEEEEE-SSS--------SSSS-EEEEETTEEEEEEE-HHHHHSSSS---EEEEEEEEEETTEEETTEE
T ss_pred EEecCCCcEEEEEEEeccccccccccccCCCceEEEEEecceEEEeccCHHHHcCCCceEEEEEEEEEEEeCCcEEEEEE
Confidence 99966789999999999988643 236899999999998 789999999888744 555555344557777887777
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.57 E-value=9.7e-16 Score=159.84 Aligned_cols=229 Identities=19% Similarity=0.196 Sum_probs=145.3
Q ss_pred eeeeEeecCCccEEEEEcc-cchhhhhhcccccccccCCCCCchHHHHH-HHHHHHhcCCCCCCCCCCCCCCCCCCcCcc
Q 007860 334 WHYVAKNLSSTELTVKLVP-VVGAALISGLENYALVPNDLSTVPEQVIA-MRALKESLRVPDRMGWNGDPCAPTNWDAWE 411 (587)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~-~~~s~~Ln~lei~~~~~~~~~~~p~~~~a-L~~lk~~~~~~~~~~w~g~pc~~~~~~~~~ 411 (587)
..+..+++++|.++ .+.. ...+ +|.+-.++++.|.++++|.-+-. |.+++..-..-+...-. .|-.+.
T Consensus 173 ~ni~~L~La~N~It-~l~~~~F~~--lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv-------e~ltFq 242 (873)
T KOG4194|consen 173 VNIKKLNLASNRIT-TLETGHFDS--LNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV-------EGLTFQ 242 (873)
T ss_pred CCceEEeecccccc-ccccccccc--cchheeeecccCcccccCHHHhhhcchhhhhhccccceeee-------hhhhhc
Confidence 35777888888776 3332 2333 77788889999999999976554 66666532211111000 000111
Q ss_pred ceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcc
Q 007860 412 GITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS 490 (587)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~ 490 (587)
.+..++.|.|..|++...-...|..|.++++|+|+.|++..---.++.. ++|+.|+||+|.++-..++.
T Consensus 243 ----------gL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~ 312 (873)
T KOG4194|consen 243 ----------GLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS 312 (873)
T ss_pred ----------CchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch
Confidence 1234566666666666555556666666666666666666333333333 66666666666666556666
Q ss_pred ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCcccccc---------c
Q 007860 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGL---------P 547 (587)
Q Consensus 491 l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~---------p 547 (587)
+...++|+.|+|+.|+++ +++++-+.....|+.|.|+ +.+|++|+|++|.+++.+ .
T Consensus 313 WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 313 WSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 666666666666666666 4554444444456666666 567888888888887532 2
Q ss_pred ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCCC
Q 007860 548 QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 548 ~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
+.|+.|+|.+|+| +++..|+.|||.+|.|..+-.+-
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccc
Confidence 5688888999987 78999999999999887765543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.57 E-value=2.1e-16 Score=165.56 Aligned_cols=243 Identities=23% Similarity=0.277 Sum_probs=160.8
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~ 414 (587)
+.+-+.+...+|. .+|...+. +..+|.+.+..|.+.++-.++..|-.++....-.+...-.|-|-..-.....+-+.
T Consensus 33 ~~~WLkLnrt~L~-~vPeEL~~--lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 33 QMTWLKLNRTKLE-QVPEELSR--LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred heeEEEechhhhh-hChHHHHH--HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 3445556666666 66777665 78888888888887777777777777766543333222233221100000111111
Q ss_pred e-------cCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc-
Q 007860 415 C-------HPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG- 485 (587)
Q Consensus 415 c-------~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g- 485 (587)
. .+.......++..|+|++|+|..+...-+.+|+.|-.||||+|+|. .+|+.+.. ..|++|+|++|.|.-
T Consensus 110 LShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hf 188 (1255)
T KOG0444|consen 110 LSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHF 188 (1255)
T ss_pred cchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHH
Confidence 1 1222233456788999999998544456789999999999999999 88887777 788888888876531
Q ss_pred ------------------------cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-------------
Q 007860 486 ------------------------SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS------------- 528 (587)
Q Consensus 486 ------------------------~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------- 528 (587)
.+|.++-.+.+|..+|||.|++. .+|+.+.++. +|+.|+||
T Consensus 189 QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~-~LrrLNLS~N~iteL~~~~~~ 266 (1255)
T KOG0444|consen 189 QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLR-NLRRLNLSGNKITELNMTEGE 266 (1255)
T ss_pred HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhh-hhheeccCcCceeeeeccHHH
Confidence 25556666777788888888887 6888888877 58888888
Q ss_pred ccccceEECCCCcccccccc-------------------------ccccc------ccccccc-------CCCCCCcEEE
Q 007860 529 VVYICCIRRGRNDYDFGLPQ-------------------------DLMSL------SAKRNRY-------QRQKSLMLLE 570 (587)
Q Consensus 529 l~~L~~L~L~~N~l~~~~p~-------------------------~L~~L------~l~~N~i-------~~l~~L~~L~ 570 (587)
..+|++|+||+|+++ .+|. .++.| .+++|++ .++.+|+.|.
T Consensus 267 W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~ 345 (1255)
T KOG0444|consen 267 WENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLK 345 (1255)
T ss_pred Hhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhc
Confidence 455667777777776 4553 22222 1334443 5677888888
Q ss_pred ccCCCCCCCCCCCC
Q 007860 571 MESQHAKGLPTLPL 584 (587)
Q Consensus 571 Ls~N~l~~~P~~~~ 584 (587)
|++|+|-.+|+-++
T Consensus 346 L~~NrLiTLPeaIH 359 (1255)
T KOG0444|consen 346 LDHNRLITLPEAIH 359 (1255)
T ss_pred ccccceeechhhhh
Confidence 89998888887653
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.57 E-value=3.7e-17 Score=163.68 Aligned_cols=224 Identities=22% Similarity=0.296 Sum_probs=123.9
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCC-C--CCCCCCCCCC--cC
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMG-W--NGDPCAPTNW--DA 409 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~-w--~g~pc~~~~~--~~ 409 (587)
.++++++.+|++. ++||+++. +.++.-+.++.+.+..+|+++..+..+++..-..+... - ....|..-.. ..
T Consensus 69 ~l~vl~~~~n~l~-~lp~aig~--l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLS-QLPAAIGE--LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhh-hCCHHHHH--HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 4677788888887 88888876 66666667777778888888888888877542221100 0 0000000000 00
Q ss_pred ccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCC
Q 007860 410 WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (587)
Q Consensus 410 ~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP 488 (587)
-..+...+.....+.++..+++.+|++....|+.+ +|+.|++||.-+|.+. .+|+.++. .+|+-|+|..|++. .+|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 00111111111222345556666666663333333 3666666666666665 66666666 66666666666666 566
Q ss_pred ccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccc------ccccccccccccCC
Q 007860 489 DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQ------DLMSLSAKRNRYQR 562 (587)
Q Consensus 489 ~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~------~L~~L~l~~N~i~~ 562 (587)
+|..+..|+.|+++.|++. .+|.+.++. +++|.+|+|..|++. +.|. +|..||+++|.|+.
T Consensus 223 -ef~gcs~L~Elh~g~N~i~-~lpae~~~~----------L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~ 289 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQIE-MLPAEHLKH----------LNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS 289 (565)
T ss_pred -CCCccHHHHHHHhcccHHH-hhHHHHhcc----------cccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence 4666666666666666666 566665542 334556677777776 6663 34455555555422
Q ss_pred CC------CCcEEEccCCCCC
Q 007860 563 QK------SLMLLEMESQHAK 577 (587)
Q Consensus 563 l~------~L~~L~Ls~N~l~ 577 (587)
+. +|+.|-+.+|.|+
T Consensus 290 Lp~sLgnlhL~~L~leGNPlr 310 (565)
T KOG0472|consen 290 LPYSLGNLHLKFLALEGNPLR 310 (565)
T ss_pred CCcccccceeeehhhcCCchH
Confidence 11 4455555555544
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.49 E-value=1.4e-15 Score=152.54 Aligned_cols=147 Identities=24% Similarity=0.345 Sum_probs=95.9
Q ss_pred eeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccceee
Q 007860 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (587)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c 415 (587)
+.++.+.+|++. .+||..-. +..+.-++...+.++++|++++.|..+...+...+.... -|-+
T Consensus 162 l~~l~~~~n~l~-~l~~~~i~--m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~--lPef------------ 224 (565)
T KOG0472|consen 162 LSKLDLEGNKLK-ALPENHIA--MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRF--LPEF------------ 224 (565)
T ss_pred HHHhhccccchh-hCCHHHHH--HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhccccc--CCCC------------
Confidence 334444555554 33333322 333334444445566677776666666554432221110 0111
Q ss_pred cCCCCCCceeEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC
Q 007860 416 HPNKDETAVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (587)
Q Consensus 416 ~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~ 493 (587)
..+..+..+.++.|.|. .+|++.+ .|.+|..|||..|++. +.|+.++. .+|+.||+|+|.++ .+|.++++
T Consensus 225 -----~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 225 -----PGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred -----CccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCccccc
Confidence 11233667788888887 6776665 8899999999999998 89999988 89999999999999 67888998
Q ss_pred CCCCCEEEccCCcCc
Q 007860 494 SSKLQLVLLNNNLLE 508 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~ 508 (587)
+ .|+.|-+.+|++.
T Consensus 297 l-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLR 310 (565)
T ss_pred c-eeeehhhcCCchH
Confidence 8 8888888888664
No 13
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.49 E-value=2.9e-14 Score=149.01 Aligned_cols=158 Identities=24% Similarity=0.318 Sum_probs=127.1
Q ss_pred CCCCCCCCcCccceeecCCCCCC----------ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC
Q 007860 400 DPCAPTNWDAWEGITCHPNKDET----------AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG 469 (587)
Q Consensus 400 ~pc~~~~~~~~~gv~c~~~~~~~----------~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 469 (587)
.+|...|.|.-.-..|+...... +...+.|++++|.++..-+.+|.++++|++++|..|.|+ .||....
T Consensus 44 ~~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~ 122 (873)
T KOG4194|consen 44 SECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGH 122 (873)
T ss_pred ccCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccc
Confidence 46766666777777787654321 335678999999999888999999999999999999999 9998777
Q ss_pred C-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccce
Q 007860 470 Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICC 534 (587)
Q Consensus 470 ~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~ 534 (587)
. .+|+.|+|.+|.++..-.+++..++.|+.||||.|.++ .+|..-+....+++.|+|+ +++|.+
T Consensus 123 ~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~t 201 (873)
T KOG4194|consen 123 ESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLT 201 (873)
T ss_pred cccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchhee
Confidence 7 78999999999999666678888999999999999998 6876655555578888888 677888
Q ss_pred EECCCCccccccc-------ccccccccccccc
Q 007860 535 IRRGRNDYDFGLP-------QDLMSLSAKRNRY 560 (587)
Q Consensus 535 L~L~~N~l~~~~p-------~~L~~L~l~~N~i 560 (587)
|.|++|+++ .+| +.|+.|+|.+|+|
T Consensus 202 lkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~i 233 (873)
T KOG4194|consen 202 LKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRI 233 (873)
T ss_pred eecccCccc-ccCHHHhhhcchhhhhhccccce
Confidence 888888887 555 3466677777765
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.3e-15 Score=136.44 Aligned_cols=144 Identities=26% Similarity=0.393 Sum_probs=115.4
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.|.|++|+++ .+|+.+.+|.+|+.|++++|++. .+|.+++. ++|++|+++-|++. .+|..|+.++.|+.|||
T Consensus 33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhc
Confidence 45788999999998 78888999999999999999998 89999998 99999999999998 89999999999999999
Q ss_pred cCCcCc-ccCchhhhhcccCCceeeccccccceEECCCCcccccccccccc------cccccccc-------CCCCCCcE
Q 007860 503 NNNLLE-GRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMS------LSAKRNRY-------QRQKSLML 568 (587)
Q Consensus 503 s~N~l~-g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~------L~l~~N~i-------~~l~~L~~ 568 (587)
+.|++. ..+|..|+-+. .|+.|+|++|.|. .+|++++. |.+..|.+ ..+..|++
T Consensus 110 tynnl~e~~lpgnff~m~-----------tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lre 177 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMT-----------TLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRE 177 (264)
T ss_pred cccccccccCCcchhHHH-----------HHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHH
Confidence 999886 45677776544 3556677777776 56644333 33555654 55667888
Q ss_pred EEccCCCCCCCCCC
Q 007860 569 LEMESQHAKGLPTL 582 (587)
Q Consensus 569 L~Ls~N~l~~~P~~ 582 (587)
|.+++|+++.+|..
T Consensus 178 lhiqgnrl~vlppe 191 (264)
T KOG0617|consen 178 LHIQGNRLTVLPPE 191 (264)
T ss_pred HhcccceeeecChh
Confidence 89999999888864
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.39 E-value=3e-14 Score=127.85 Aligned_cols=159 Identities=22% Similarity=0.345 Sum_probs=93.8
Q ss_pred eeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccceee
Q 007860 336 YVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC 415 (587)
Q Consensus 336 l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c 415 (587)
.+.+.++.|+++ .+||.+.. +-.+|++.+..+.+..+|..+..|.+++..-..-+ .+.-
T Consensus 35 ITrLtLSHNKl~-~vppnia~--l~nlevln~~nnqie~lp~~issl~klr~lnvgmn------------------rl~~ 93 (264)
T KOG0617|consen 35 ITRLTLSHNKLT-VVPPNIAE--LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN------------------RLNI 93 (264)
T ss_pred hhhhhcccCcee-ecCCcHHH--hhhhhhhhcccchhhhcChhhhhchhhhheecchh------------------hhhc
Confidence 445668899998 67777766 77889999988888888888877777765321111 1111
Q ss_pred cCCCCCCceeEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC
Q 007860 416 HPNKDETAVVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (587)
Q Consensus 416 ~~~~~~~~~~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~ 493 (587)
.+.+.+.++.++.|||+.|++. ..+|..|..|+.|+-|+|+.|.+. .+|+.++. ++|+.|.+..|.+- ++|.+++.
T Consensus 94 lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~ 171 (264)
T KOG0617|consen 94 LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGD 171 (264)
T ss_pred CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHH
Confidence 1222233344555555555553 235555555555555555555555 55555555 55555555555555 55555555
Q ss_pred CCCCCEEEccCCcCcccCchhhhhc
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELYSI 518 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~~~ 518 (587)
++.|+.|++.+|.++ .+|++++++
T Consensus 172 lt~lrelhiqgnrl~-vlppel~~l 195 (264)
T KOG0617|consen 172 LTRLRELHIQGNRLT-VLPPELANL 195 (264)
T ss_pred HHHHHHHhcccceee-ecChhhhhh
Confidence 555555555555555 455555543
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=1.9e-12 Score=146.43 Aligned_cols=186 Identities=22% Similarity=0.346 Sum_probs=114.7
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~ 414 (587)
.+..+++++|+++ .+|.... ..++.+.+..+.+..+|..+.. .++...... + ....+
T Consensus 200 ~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~--~L~~L~Ls~-----N----------~L~~L- 256 (754)
T PRK15370 200 QITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPD--TIQEMELSI-----N----------RITEL- 256 (754)
T ss_pred CCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhc--cccEEECcC-----C----------ccCcC-
Confidence 4667788899888 6665442 3577777777777777754321 222211110 0 00000
Q ss_pred ecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCC
Q 007860 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSS 494 (587)
Q Consensus 415 c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l 494 (587)
+.. ....|+.|+|++|+|+ .+|..+. ++|+.|+|++|+|+ .+|..+. .+|+.|++++|+++ .+|..+.
T Consensus 257 --P~~--l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp-~sL~~L~Ls~N~Lt-~LP~~l~-- 324 (754)
T PRK15370 257 --PER--LPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP-SGITHLNVQSNSLT-ALPETLP-- 324 (754)
T ss_pred --Chh--HhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch-hhHHHHHhcCCccc-cCCcccc--
Confidence 000 1124788999999998 5676554 58999999999998 5665433 57888999999998 5776543
Q ss_pred CCCCEEEccCCcCcccCchhhhhcccCCceeeccc-----------cccceEECCCCccccccc----cccccccccccc
Q 007860 495 SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSV-----------VYICCIRRGRNDYDFGLP----QDLMSLSAKRNR 559 (587)
Q Consensus 495 ~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl-----------~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~ 559 (587)
++|+.|++++|.++ .+|..+. .+|+.|+++. .+|+.|+|++|+|+ .+| ..|+.|++++|+
T Consensus 325 ~sL~~L~Ls~N~Lt-~LP~~l~---~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt-~LP~~l~~sL~~LdLs~N~ 399 (754)
T PRK15370 325 PGLKTLEAGENALT-SLPASLP---PELQVLDVSKNQITVLPETLPPTITTLDVSRNALT-NLPENLPAALQIMQASRNN 399 (754)
T ss_pred ccceeccccCCccc-cCChhhc---CcccEEECCCCCCCcCChhhcCCcCEEECCCCcCC-CCCHhHHHHHHHHhhccCC
Confidence 68889999999988 4776553 3455555551 23445555555554 333 234455555555
Q ss_pred c
Q 007860 560 Y 560 (587)
Q Consensus 560 i 560 (587)
|
T Consensus 400 L 400 (754)
T PRK15370 400 L 400 (754)
T ss_pred c
Confidence 5
No 17
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan []. This entry represents a malectin-like domain found in a number of plant receptor kinases.
Probab=99.22 E-value=5e-11 Score=124.28 Aligned_cols=151 Identities=23% Similarity=0.323 Sum_probs=98.8
Q ss_pred cEEEccCCCC--CC--cCCCCceEeeC---CCceecCC-ccc----ccCCCCCCCCCCceeeeeCCCCC-CCcceEeecC
Q 007860 31 SYRIDCGSAT--ST--TDPFNTTWQAD---DRYYTSGA-TSI----VSEPLHFRFPHEKTLRYFPPSSG-KKNCYIIPNL 97 (587)
Q Consensus 31 ~~~i~cG~~~--~~--~d~~~~~w~~D---d~~~~~g~-~~~----~~~~~~~~~~~y~t~R~f~~~~~-~~~~Y~~pv~ 97 (587)
.+|+|||++. .. .|.-.|.|.+. ..+..... ..+ ......+|..+|+|||.....+. -..+|.+ ++
T Consensus 180 ~~R~n~G~~~~~iryp~D~~dR~W~~~~~~~~~~~ist~~~i~~~~~~~~~~~P~~V~~TA~~~~~~s~~~nltw~~-~~ 258 (347)
T PF12819_consen 180 VYRLNVGGSSSFIRYPDDTYDRIWQPYSSSPGWSNISTTSNININSSNNPYDAPSAVYQTARTPSNSSDPLNLTWSF-VD 258 (347)
T ss_pred EEeecCCCcccccCCCCCcceeeccccccCccccccccceeeecccCCccCcChHHHHHhhhcccccccceEEEecc-CC
Confidence 4799999986 22 45667999962 11111011 111 11234567789999999875321 2347778 77
Q ss_pred CCceEEEEEEeecCCCC-CCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecC-CeeEEEEeeCCCC--Cce
Q 007860 98 PPGRYYIRTFTVYDNYD-GKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKD-GELDLCFYSFATD--PPV 173 (587)
Q Consensus 98 ~~~~ylvRl~F~~~n~~-~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~-~~l~i~~~~~~~~--~pf 173 (587)
++..|+||+||..=-.. .....++|+|++||+.+.+.+++........+.++++++.+++ +.+.|+|+++..+ .|+
T Consensus 259 ~~~~y~v~lHFaEi~~~~~~~~~R~F~IyiN~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~isL~~t~~S~lppi 338 (347)
T PF12819_consen 259 PGFSYYVRLHFAEIQSLSPNNNQREFDIYINGQTAYSDVSPPYLGADTVPYYSDYVVNVPDSGFLNISLGPTPDSTLPPI 338 (347)
T ss_pred CCccEEEEEEEeecccccCCCCeEEEEEEECCeEccCccCcccccCcceEeecceEEEecCCCEEEEEEEeCCCCCcCce
Confidence 77899999999531111 1122689999999999776555422222234457888887766 4699999998765 499
Q ss_pred eeeEEeEec
Q 007860 174 IASLEVQQI 182 (587)
Q Consensus 174 In~iEi~~l 182 (587)
|||+||+.+
T Consensus 339 LNalEIy~v 347 (347)
T PF12819_consen 339 LNALEIYKV 347 (347)
T ss_pred eEeeeeEeC
Confidence 999999864
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.19 E-value=3.7e-12 Score=140.02 Aligned_cols=164 Identities=23% Similarity=0.272 Sum_probs=109.4
Q ss_pred eeeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (587)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv 413 (587)
..++.++++.++++ .+|.-.+. +..+|...+..+.+..+|.++..+.+++.....-+. +
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~--~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~ne------------------l 299 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGA--CANLEALNANHNRLVALPLRISRITSLVSLSAAYNE------------------L 299 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHh--cccceEecccchhHHhhHHHHhhhhhHHHHHhhhhh------------------h
Confidence 34666777888777 56633444 666788888888889999999988888764321111 1
Q ss_pred eecCCCCCCceeEEEEEcCCCCCcccCchhhc-------------------------CCCCCCEEEccCCCCCCCCCCCC
Q 007860 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKIS-------------------------LLSNLVNLNLSTNSLGGTLPSGL 468 (587)
Q Consensus 414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~-------------------------~l~~L~~L~Ls~N~l~g~ip~~~ 468 (587)
.-.+........|+.|+|..|+|....+..+. .++.|+.|.+.+|.|+...-+-+
T Consensus 300 ~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l 379 (1081)
T KOG0618|consen 300 EYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVL 379 (1081)
T ss_pred hhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhh
Confidence 11111122234588899999998733322222 23446677777888876665566
Q ss_pred CC-CCccEEeccCCcCCccCCcc-ccCCCCCCEEEccCCcCcccCchhhhhccc
Q 007860 469 GQ-QSLVRLDLSDNQFTGSIPDS-LTSSSKLQLVLLNNNLLEGRVPEELYSIGV 520 (587)
Q Consensus 469 ~~-~~L~~L~Ls~N~l~g~iP~~-l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~ 520 (587)
.. ++|+.|+|++|+|. .+|.. +.++..|+.|+||+|++. .+|..+..+..
T Consensus 380 ~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGR 431 (1081)
T ss_pred ccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhh
Confidence 66 88888888888887 67764 567788888888888887 68877776653
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.18 E-value=1e-10 Score=131.78 Aligned_cols=145 Identities=23% Similarity=0.248 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCcccc------------
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT------------ 492 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~------------ 492 (587)
.++.|++.+|+|+. +|. .+++|++|+|++|+|+ .+|... ++|+.|++++|+|+ .+|..+.
T Consensus 223 ~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~lp--~sL~~L~Ls~N~L~-~Lp~lp~~L~~L~Ls~N~L 294 (788)
T PRK15387 223 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVLP--PGLLELSIFSNPLT-HLPALPSGLCKLWIFGNQL 294 (788)
T ss_pred CCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCcc--cccceeeccCCchh-hhhhchhhcCEEECcCCcc
Confidence 57888999999884 554 3578899999999998 566422 56666666666665 3443211
Q ss_pred -----CCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------ccccceEECCCCcccc--ccccccccccc
Q 007860 493 -----SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------VVYICCIRRGRNDYDF--GLPQDLMSLSA 555 (587)
Q Consensus 493 -----~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------l~~L~~L~L~~N~l~~--~~p~~L~~L~l 555 (587)
.+++|+.|+|++|+|++ +|.. ...|+.|+++ ..+|+.|+|++|+|+. .+|.+|..|++
T Consensus 295 t~LP~~p~~L~~LdLS~N~L~~-Lp~l----p~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~L 369 (788)
T PRK15387 295 TSLPVLPPGLQELSVSDNQLAS-LPAL----PSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWA 369 (788)
T ss_pred ccccccccccceeECCCCcccc-CCCC----cccccccccccCccccccccccccceEecCCCccCCCCCCCcccceehh
Confidence 11345555555555552 3321 1123333333 1245566666666653 22345566666
Q ss_pred cccccCCCC----CCcEEEccCCCCCCCCCC
Q 007860 556 KRNRYQRQK----SLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 556 ~~N~i~~l~----~L~~L~Ls~N~l~~~P~~ 582 (587)
++|+|..++ .|+.|+|++|+|+++|..
T Consensus 370 s~N~L~~LP~l~~~L~~LdLs~N~Lt~LP~l 400 (788)
T PRK15387 370 YNNRLTSLPALPSGLKELIVSGNRLTSLPVL 400 (788)
T ss_pred hccccccCcccccccceEEecCCcccCCCCc
Confidence 666666655 466667777777766654
No 20
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=8.5e-12 Score=125.52 Aligned_cols=107 Identities=22% Similarity=0.289 Sum_probs=78.7
Q ss_pred CCCCCCCcCc---cceeecCCCC-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860 401 PCAPTNWDAW---EGITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q 471 (587)
Q Consensus 401 pc~~~~~~~~---~gv~c~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~ 471 (587)
.|...|.|+- .-|+|...+. ..++..+.|+|..|+|+...+..|+.+++|+.||||+|.|+..-|+.|.. .
T Consensus 36 ~CP~pC~Cs~~~g~~VdCr~~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~ 115 (498)
T KOG4237|consen 36 ACPAPCTCSDVEGGIVDCRGKGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLA 115 (498)
T ss_pred cCCCCcccCCCCCceEEccCCCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhH
Confidence 4544444665 5577876543 22456788999999999888899999999999999999999888888888 6
Q ss_pred CccEE-eccCCcCCccCC-ccccCCCCCCEEEccCCcCc
Q 007860 472 SLVRL-DLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 472 ~L~~L-~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~ 508 (587)
+|..| ++++|+|+ .+| ..|+.|.+|+.|.+.-|++.
T Consensus 116 ~l~~Lvlyg~NkI~-~l~k~~F~gL~slqrLllNan~i~ 153 (498)
T KOG4237|consen 116 SLLSLVLYGNNKIT-DLPKGAFGGLSSLQRLLLNANHIN 153 (498)
T ss_pred hhhHHHhhcCCchh-hhhhhHhhhHHHHHHHhcChhhhc
Confidence 65555 55669998 555 45666666666666655555
No 21
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.15 E-value=7.1e-12 Score=131.26 Aligned_cols=172 Identities=28% Similarity=0.427 Sum_probs=109.7
Q ss_pred cccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhh
Q 007860 365 YALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444 (587)
Q Consensus 365 ~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l 444 (587)
.++..+...++|.++.++..+.......+ | +.|.+.....+..++.|+|+.|+++ .+|..+
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n--------~----------~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l 140 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHN--------C----------IRTIPEAICNLEALTFLDLSSNQLS-HLPDGL 140 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhc--------c----------ceecchhhhhhhHHHHhhhccchhh-cCChhh
Confidence 34455556667777666666654332221 1 1111111122334667777777776 677777
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCc
Q 007860 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG 523 (587)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~ 523 (587)
+.|+ |+.|-+++|+++ .+|+.++. ..|..||.+.|++. .+|..++.+.+|+.|.+..|++. .+|++++.+.
T Consensus 141 C~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp---- 212 (722)
T KOG0532|consen 141 CDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP---- 212 (722)
T ss_pred hcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc----
Confidence 7776 777777777777 77777777 77777777777777 77777777777777777777777 6777777433
Q ss_pred eeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCC
Q 007860 524 AFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 524 ~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
|..||++.|+++ .+|-. |.+|+.|++|-|.+|.|+..|..
T Consensus 213 --------Li~lDfScNkis-~iPv~----------fr~m~~Lq~l~LenNPLqSPPAq 252 (722)
T KOG0532|consen 213 --------LIRLDFSCNKIS-YLPVD----------FRKMRHLQVLQLENNPLQSPPAQ 252 (722)
T ss_pred --------eeeeecccCcee-ecchh----------hhhhhhheeeeeccCCCCCChHH
Confidence 334555566666 56654 34455777777777777777653
No 22
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.14 E-value=7.8e-11 Score=133.36 Aligned_cols=145 Identities=22% Similarity=0.362 Sum_probs=86.4
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 505 (587)
|+.|+|++|+|+ .+|..+. .+|+.|+|++|.+. .+|..+. .+|+.|++++|+|+ .+|..+. ++|+.|++++|
T Consensus 222 L~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~-s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N 293 (754)
T PRK15370 222 IKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP-SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDN 293 (754)
T ss_pred CCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh-CCCCEEECcCCccC-ccccccC--CCCcEEECCCC
Confidence 444555555544 2333322 24555555555555 4444332 45677777777776 5666543 46777777777
Q ss_pred cCcccCchhhhhcccCCceeecc-----------ccccceEECCCCcccc---ccccccccccccccccCC-----CCCC
Q 007860 506 LLEGRVPEELYSIGVHGGAFDLS-----------VVYICCIRRGRNDYDF---GLPQDLMSLSAKRNRYQR-----QKSL 566 (587)
Q Consensus 506 ~l~g~ip~~l~~~~~~L~~l~Ls-----------l~~L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i~~-----l~~L 566 (587)
+|+ .+|..+.. .|+.|+++ ..+|+.|++++|.++. .+|++|+.|++++|+|.. ...|
T Consensus 294 ~Lt-~LP~~lp~---sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~lp~~L 369 (754)
T PRK15370 294 SIR-TLPAHLPS---GITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPETLPPTI 369 (754)
T ss_pred ccc-cCcccchh---hHHHHHhcCCccccCCccccccceeccccCCccccCChhhcCcccEEECCCCCCCcCChhhcCCc
Confidence 776 45543321 23444433 2457777788887763 233578888888888743 2468
Q ss_pred cEEEccCCCCCCCCCC
Q 007860 567 MLLEMESQHAKGLPTL 582 (587)
Q Consensus 567 ~~L~Ls~N~l~~~P~~ 582 (587)
+.|+|++|+|+.+|..
T Consensus 370 ~~LdLs~N~Lt~LP~~ 385 (754)
T PRK15370 370 TTLDVSRNALTNLPEN 385 (754)
T ss_pred CEEECCCCcCCCCCHh
Confidence 8888888888888864
No 23
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.13 E-value=1.7e-10 Score=130.15 Aligned_cols=145 Identities=24% Similarity=0.257 Sum_probs=83.3
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCC-----------------CCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCc
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLL-----------------SNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTG 485 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l-----------------~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g 485 (587)
++.|+.|+|++|+|+. +|..+..| ++|+.|+|++|+++ .+|... ++|+.|+|++|+|+
T Consensus 241 p~~Lk~LdLs~N~Lts-LP~lp~sL~~L~Ls~N~L~~Lp~lp~~L~~L~Ls~N~Lt-~LP~~p--~~L~~LdLS~N~L~- 315 (788)
T PRK15387 241 PPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLT-SLPVLP--PGLQELSVSDNQLA- 315 (788)
T ss_pred CCCCcEEEecCCccCc-ccCcccccceeeccCCchhhhhhchhhcCEEECcCCccc-cccccc--cccceeECCCCccc-
Confidence 3578999999999984 45422111 23444555555555 344311 67999999999999
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecccc----------ccceEECCCCccccccc---ccccc
Q 007860 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVV----------YICCIRRGRNDYDFGLP---QDLMS 552 (587)
Q Consensus 486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~----------~L~~L~L~~N~l~~~~p---~~L~~ 552 (587)
.+|... .+|+.|++++|+|+ .+|. +..+|+.|+|+.+ +|+.|++++|+++ .+| .+|..
T Consensus 316 ~Lp~lp---~~L~~L~Ls~N~L~-~LP~----lp~~Lq~LdLS~N~Ls~LP~lp~~L~~L~Ls~N~L~-~LP~l~~~L~~ 386 (788)
T PRK15387 316 SLPALP---SELCKLWAYNNQLT-SLPT----LPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLT-SLPALPSGLKE 386 (788)
T ss_pred cCCCCc---ccccccccccCccc-cccc----cccccceEecCCCccCCCCCCCcccceehhhccccc-cCcccccccce
Confidence 466522 23555566666665 3443 1224555555522 2344556666665 233 34566
Q ss_pred ccccccccCCC----CCCcEEEccCCCCCCCCC
Q 007860 553 LSAKRNRYQRQ----KSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 553 L~l~~N~i~~l----~~L~~L~Ls~N~l~~~P~ 581 (587)
|++++|+|..+ .+|+.|++++|+|+++|.
T Consensus 387 LdLs~N~Lt~LP~l~s~L~~LdLS~N~LssIP~ 419 (788)
T PRK15387 387 LIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM 419 (788)
T ss_pred EEecCCcccCCCCcccCCCEEEccCCcCCCCCc
Confidence 66666666432 356666666666666664
No 24
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.09 E-value=2.7e-12 Score=141.09 Aligned_cols=158 Identities=23% Similarity=0.301 Sum_probs=127.9
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.+++++|+++ .+|++++.+.+|+.|+..+|+|+ .+|..+.. .+|+.|.+.+|.++ .+|+....+++|++|+|
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL 317 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL 317 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence 46899999999999 46699999999999999999997 99999988 99999999999999 89998999999999999
Q ss_pred cCCcCcccCchhhhhccc-CCceeecc--------------ccccceEECCCCcccc-ccc-----ccccccccccccc-
Q 007860 503 NNNLLEGRVPEELYSIGV-HGGAFDLS--------------VVYICCIRRGRNDYDF-GLP-----QDLMSLSAKRNRY- 560 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~-~L~~l~Ls--------------l~~L~~L~L~~N~l~~-~~p-----~~L~~L~l~~N~i- 560 (587)
..|+|. .+|+.+..... .|+.+..+ ...|+.|+|.+|.|+. .+| ..|+.|+|++|++
T Consensus 318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~ 396 (1081)
T KOG0618|consen 318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN 396 (1081)
T ss_pred hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence 999998 68875544322 13434333 4457778888888864 234 5677888888876
Q ss_pred -------CCCCCCcEEEccCCCCCCCCCCCCC
Q 007860 561 -------QRQKSLMLLEMESQHAKGLPTLPLN 585 (587)
Q Consensus 561 -------~~l~~L~~L~Ls~N~l~~~P~~~~~ 585 (587)
.+|..|++|+||+|+|+.+|+++.+
T Consensus 397 ~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~ 428 (1081)
T KOG0618|consen 397 SFPASKLRKLEELEELNLSGNKLTTLPDTVAN 428 (1081)
T ss_pred cCCHHHHhchHHhHHHhcccchhhhhhHHHHh
Confidence 5777888888888888888876543
No 25
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.97 E-value=2.5e-09 Score=128.55 Aligned_cols=158 Identities=17% Similarity=0.239 Sum_probs=91.9
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccC---------------------C
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSD---------------------N 481 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~---------------------N 481 (587)
+.+|+.|+|++|.....+|..+..|++|+.|++++|..-+.+|..+..++|+.|+|++ |
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n 735 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDET 735 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCC
Confidence 3456777777766555677777777777777777654444566544114444444444 4
Q ss_pred cCCccCCccc------------------------------cCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc---
Q 007860 482 QFTGSIPDSL------------------------------TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--- 528 (587)
Q Consensus 482 ~l~g~iP~~l------------------------------~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--- 528 (587)
.+. .+|..+ ...++|+.|+|++|...+.+|..++.+. +|+.|+++
T Consensus 736 ~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~-~L~~L~Ls~C~ 813 (1153)
T PLN03210 736 AIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLH-KLEHLEIENCI 813 (1153)
T ss_pred ccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCC-CCCEEECCCCC
Confidence 433 333321 0113566666666666656777666655 46666665
Q ss_pred ----------ccccceEECCCCcccccc---cccccccccccccc-------CCCCCCcEEEccC-CCCCCCCCC
Q 007860 529 ----------VVYICCIRRGRNDYDFGL---PQDLMSLSAKRNRY-------QRQKSLMLLEMES-QHAKGLPTL 582 (587)
Q Consensus 529 ----------l~~L~~L~L~~N~l~~~~---p~~L~~L~l~~N~i-------~~l~~L~~L~Ls~-N~l~~~P~~ 582 (587)
+.+|+.|+|++|..-..+ +.+++.|+|++|.| ..+++|+.|+|++ |+|+.+|..
T Consensus 814 ~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~ 888 (1153)
T PLN03210 814 NLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN 888 (1153)
T ss_pred CcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc
Confidence 345666777765432233 34667777777766 3466777777766 666666653
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.91 E-value=7.8e-10 Score=114.13 Aligned_cols=148 Identities=22% Similarity=0.306 Sum_probs=91.2
Q ss_pred eEEEEEcCCCCCcc----cCchhhcCC-CCCCEEEccCCCCCCCCC----CCCCC-CCccEEeccCCcCCcc----CCcc
Q 007860 425 VISQIDLGSQGLKG----YISDKISLL-SNLVNLNLSTNSLGGTLP----SGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (587)
Q Consensus 425 ~l~~L~L~~n~l~g----~~p~~l~~l-~~L~~L~Ls~N~l~g~ip----~~~~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (587)
.++.|++++|.+++ .+...+..+ ++|+.|++++|.+++... ..+.. .+|++|++++|.+++. ++..
T Consensus 109 ~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~ 188 (319)
T cd00116 109 SLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEG 188 (319)
T ss_pred cccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHH
Confidence 37777777777762 333445566 777777777777774322 22333 5677777777777632 3334
Q ss_pred ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc--------ccc---cccccccccccc
Q 007860 491 LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF--------GLP---QDLMSLSAKRNR 559 (587)
Q Consensus 491 l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~--------~~p---~~L~~L~l~~N~ 559 (587)
+..+++|+.|++++|.+.+.-...+...... ..+|++|++++|+++. .++ ..|+.|++++|.
T Consensus 189 l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~-------~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 189 LKANCNLEVLDLNNNGLTDEGASALAETLAS-------LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHhCCCCCEEeccCCccChHHHHHHHHHhcc-------cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 4455677777777777763322223222111 3457777888887763 122 468888888887
Q ss_pred c------------CCCCCCcEEEccCCCCCCC
Q 007860 560 Y------------QRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 560 i------------~~l~~L~~L~Ls~N~l~~~ 579 (587)
| ..++.|+.+++++|+++..
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGNKFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence 6 2456788889988888754
No 27
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.85 E-value=1.5e-08 Score=122.04 Aligned_cols=154 Identities=21% Similarity=0.224 Sum_probs=99.7
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
.+|+.|+|++|.+. .++..+..+++|+.|+|+++...+.+|. ++. ++|+.|+|++|.....+|..++.+++|+.|++
T Consensus 611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 45777888887776 5666777788888888877665556664 555 77888888777655677777777788888888
Q ss_pred cCCcCcccCchhhhhcccCCceeecc-----------ccccceEECCCCccccccc------------------------
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLS-----------VVYICCIRRGRNDYDFGLP------------------------ 547 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Ls-----------l~~L~~L~L~~N~l~~~~p------------------------ 547 (587)
++|...+.+|..+ .+ .+|+.|+|+ ..+|+.|+|++|.+. .+|
T Consensus 689 ~~c~~L~~Lp~~i-~l-~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 689 SRCENLEILPTGI-NL-KSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred CCCCCcCccCCcC-CC-CCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence 7765444666544 22 246666665 234566666666654 333
Q ss_pred ------------cccccccccccc--------cCCCCCCcEEEccCC-CCCCCCCC
Q 007860 548 ------------QDLMSLSAKRNR--------YQRQKSLMLLEMESQ-HAKGLPTL 582 (587)
Q Consensus 548 ------------~~L~~L~l~~N~--------i~~l~~L~~L~Ls~N-~l~~~P~~ 582 (587)
++|+.|++++|. +..+++|+.|+|++| +++.+|..
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~ 821 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG 821 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC
Confidence 345555566553 245667777777764 46666653
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.80 E-value=2.7e-09 Score=110.11 Aligned_cols=148 Identities=22% Similarity=0.241 Sum_probs=106.8
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCC---CCEEEccCCCCCCC----CCCCCCC--CCccEEeccCCcCCcc----CCc
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSN---LVNLNLSTNSLGGT----LPSGLGQ--QSLVRLDLSDNQFTGS----IPD 489 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~---L~~L~Ls~N~l~g~----ip~~~~~--~~L~~L~Ls~N~l~g~----iP~ 489 (587)
.+.|+.|++++|.+.+..+..+..+.. |+.|++++|++++. +...+.. ++|+.|++++|.+++. ++.
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~ 159 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK 159 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence 457999999999998777777776666 99999999998842 2222333 6889999999999843 344
Q ss_pred cccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc--------c--ccccccccccccc
Q 007860 490 SLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG--------L--PQDLMSLSAKRNR 559 (587)
Q Consensus 490 ~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~--------~--p~~L~~L~l~~N~ 559 (587)
.+..+++|++|++++|.+.+.....+...... ..+|++|+|++|.+.+. + -+.|+.|++++|.
T Consensus 160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~-------~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 160 ALRANRDLKELNLANNGIGDAGIRALAEGLKA-------NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHhCCCcCEEECcCCCCchHHHHHHHHHHHh-------CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence 56677889999999999985322222221110 24677888888887531 1 1468999999998
Q ss_pred cCC-------------CCCCcEEEccCCCCC
Q 007860 560 YQR-------------QKSLMLLEMESQHAK 577 (587)
Q Consensus 560 i~~-------------l~~L~~L~Ls~N~l~ 577 (587)
+.. ...|+.|++++|.++
T Consensus 233 l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 233 LTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred CchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 742 379999999999986
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.77 E-value=1.2e-09 Score=106.62 Aligned_cols=130 Identities=21% Similarity=0.255 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
|+.+||++|.|+ .+.+++.-++.++.|++|+|.+. .+.. +.. ++|+.||||+|.++ ++-.+-..+-+.+.|.|++
T Consensus 286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhh
Confidence 444555555544 34444444445555555555544 2221 333 44555555555444 2222222334444444554
Q ss_pred CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
|.+. .+ ..+.++. +|..|++++|++. . +.. -+.|.+++.|+.+.|.+|.|.++|+
T Consensus 362 N~iE-~L-SGL~KLY-----------SLvnLDl~~N~Ie-~----lde----V~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIE-TL-SGLRKLY-----------SLVNLDLSSNQIE-E----LDE----VNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHh-hh-hhhHhhh-----------hheeccccccchh-h----HHH----hcccccccHHHHHhhcCCCccccch
Confidence 4443 11 1122221 2333444444443 1 000 1234788889999999999998875
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.74 E-value=1.6e-09 Score=113.90 Aligned_cols=175 Identities=23% Similarity=0.341 Sum_probs=124.8
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~ 414 (587)
+-+..+++.|++. .+|..... +.-+|..-+..+.+.++|+.+..|.++.-.....++.+-..+ -.
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~--f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~------------~l 140 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACA--FVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPD------------GL 140 (722)
T ss_pred chhhhhccccccc-cCchHHHH--HHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCCh------------hh
Confidence 3445567888876 66655554 445666667777888899888888877654433332221111 11
Q ss_pred ecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccC
Q 007860 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTS 493 (587)
Q Consensus 415 c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~ 493 (587)
|.. -|..|-+++|+++ .+|++++.+..|..||.+.|.+. .+|..++. .+|+.|.+..|++. .+|+++..
T Consensus 141 C~l-------pLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~ 210 (722)
T KOG0532|consen 141 CDL-------PLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS 210 (722)
T ss_pred hcC-------cceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC
Confidence 221 2677888888887 78888888888889999999888 88888888 88888888888888 78888885
Q ss_pred CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccc
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQ 548 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~ 548 (587)
| .|..||++.|+++ .||-.|.++. .|++|.|.+|+++ ..|.
T Consensus 211 L-pLi~lDfScNkis-~iPv~fr~m~-----------~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 211 L-PLIRLDFSCNKIS-YLPVDFRKMR-----------HLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred C-ceeeeecccCcee-ecchhhhhhh-----------hheeeeeccCCCC-CChH
Confidence 5 4788888888888 7888887754 3666777788877 4443
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.67 E-value=2.1e-08 Score=107.07 Aligned_cols=153 Identities=27% Similarity=0.368 Sum_probs=83.7
Q ss_pred EEEEEcCCCCCcccCchhhcCCC-CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 426 ISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
++.|++.+|.++ .+++....++ +|+.|++++|.+. .+|..+.. +.|+.|++++|+++ .+|...+.+++|+.|+++
T Consensus 118 l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls 194 (394)
T COG4886 118 LTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLS 194 (394)
T ss_pred eeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhhheecc
Confidence 445555555554 3444444443 5555555555555 44444444 55555555555555 444444444555555555
Q ss_pred CCcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccc-----cccccccccccccccc-----
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDF-----GLPQDLMSLSAKRNRY----- 560 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~-----~~p~~L~~L~l~~N~i----- 560 (587)
+|++. .+|..+.... .|+.+.++ +.++..+.+.+|++.. .-+.+++.|++++|++
T Consensus 195 ~N~i~-~l~~~~~~~~-~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 195 GNKIS-DLPPEIELLS-ALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred CCccc-cCchhhhhhh-hhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccccccccccc
Confidence 55554 4444332211 13333222 3344555566776542 2345688888888887
Q ss_pred -CCCCCCcEEEccCCCCCCCCCCC
Q 007860 561 -QRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 561 -~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
..+..++.|++++|.+...+...
T Consensus 273 ~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 273 LGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred ccccCccCEEeccCccccccchhh
Confidence 35578899999999888776543
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.65 E-value=2.7e-08 Score=92.89 Aligned_cols=104 Identities=27% Similarity=0.390 Sum_probs=40.4
Q ss_pred eEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccc-cCCCCCCEEE
Q 007860 425 VISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLVL 501 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~ 501 (587)
.++.|+|++|.|+. + +.++ .+.+|+.|+|++|.++ .++ .+.. +.|++|++++|+++ .+++.+ ..+++|+.|+
T Consensus 20 ~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 20 KLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccc-c-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence 57889999999983 3 3566 5889999999999999 554 5666 99999999999999 676555 4689999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD 543 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~ 543 (587)
|++|++.. +. .+..+.. +++|+.|+|.+|+++
T Consensus 95 L~~N~I~~-l~-~l~~L~~--------l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 95 LSNNKISD-LN-ELEPLSS--------LPKLRVLSLEGNPVC 126 (175)
T ss_dssp -TTS---S-CC-CCGGGGG---------TT--EEE-TT-GGG
T ss_pred CcCCcCCC-hH-HhHHHHc--------CCCcceeeccCCccc
Confidence 99999973 32 2222222 567888999999987
No 33
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=3.8e-08 Score=91.87 Aligned_cols=111 Identities=26% Similarity=0.295 Sum_probs=37.6
Q ss_pred hcCCCCCCEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccC
Q 007860 444 ISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH 521 (587)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~ 521 (587)
+.+..++++|+|++|.++ .+ +.++ . .+|+.|+|++|+++ .++ .+..++.|+.|++++|.++ .+...+...
T Consensus 15 ~~n~~~~~~L~L~~n~I~-~I-e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~--- 86 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIS-TI-ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKN--- 86 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH---
T ss_pred cccccccccccccccccc-cc-cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHh---
Confidence 455667899999999998 55 3566 3 89999999999999 665 4888999999999999998 566554432
Q ss_pred CceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCC
Q 007860 522 GGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 522 L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~ 578 (587)
+++|++|+|++|++.. +..+. .+..+++|+.|+|.+|.++.
T Consensus 87 -------lp~L~~L~L~~N~I~~-----l~~l~----~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 87 -------LPNLQELYLSNNKISD-----LNELE----PLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp --------TT--EEE-TTS---S-----CCCCG----GGGG-TT--EEE-TT-GGGG
T ss_pred -------CCcCCEEECcCCcCCC-----hHHhH----HHHcCCCcceeeccCCcccc
Confidence 3357788888898862 22221 33456677777777776653
No 34
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.41 E-value=2.2e-07 Score=71.14 Aligned_cols=58 Identities=38% Similarity=0.571 Sum_probs=35.9
Q ss_pred CCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcC
Q 007860 449 NLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 507 (587)
Q Consensus 449 ~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 507 (587)
+|+.|++++|+++ .+| ..+.. ++|++|++++|+++..-|..|..+++|+.|++++|+|
T Consensus 2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4566666666666 334 34444 6666666666666654455666677777777776654
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.36 E-value=1.3e-07 Score=95.77 Aligned_cols=95 Identities=23% Similarity=0.389 Sum_probs=73.7
Q ss_pred EEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC-C
Q 007860 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN-N 505 (587)
Q Consensus 429 L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~-N 505 (587)
.+-++-+++ .+|..+- ..-..++|..|.|+ .||+. |.. ++|+.||||+|+|+..-|..|..+.+|..|-+.+ |
T Consensus 51 VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~-~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLT-EVPANLP--PETVEIRLDQNQIS-SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcc-cCcccCC--CcceEEEeccCCcc-cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 556666666 5665442 34578999999999 66665 555 9999999999999988899999999988887776 9
Q ss_pred cCcccCchhhhhcccCCceeecc
Q 007860 506 LLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 506 ~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
+|+ .+|...+.....|+.|.+.
T Consensus 127 kI~-~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 127 KIT-DLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred chh-hhhhhHhhhHHHHHHHhcC
Confidence 998 7887666655567777666
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.3e-07 Score=97.10 Aligned_cols=149 Identities=16% Similarity=0.153 Sum_probs=94.9
Q ss_pred CCceeEEEEEcCCCCCcccC--chhhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCc-cCCccccCCC
Q 007860 421 ETAVVISQIDLGSQGLKGYI--SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTG-SIPDSLTSSS 495 (587)
Q Consensus 421 ~~~~~l~~L~L~~n~l~g~~--p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g-~iP~~l~~l~ 495 (587)
..++.++.|||+.|-+.... -.-...|++|+.|+|+.|++.-.+...... +.|+.|.|+.+.|+. .+-..+..++
T Consensus 143 k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fP 222 (505)
T KOG3207|consen 143 KILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFP 222 (505)
T ss_pred hhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCC
Confidence 34567899999999887533 345678999999999999998555444444 889999999999983 2333455778
Q ss_pred CCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc--------ccccccccccccc-------
Q 007860 496 KLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP--------QDLMSLSAKRNRY------- 560 (587)
Q Consensus 496 ~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p--------~~L~~L~l~~N~i------- 560 (587)
+|+.|+|..|...+.-...... ++.|+.|+|++|++. .++ +.|..|.++.+.|
T Consensus 223 sl~~L~L~~N~~~~~~~~~~~i-----------~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d 290 (505)
T KOG3207|consen 223 SLEVLYLEANEIILIKATSTKI-----------LQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQLNLSSTGIASIAEPD 290 (505)
T ss_pred cHHHhhhhcccccceecchhhh-----------hhHHhhccccCCccc-ccccccccccccchhhhhccccCcchhcCCC
Confidence 9999999988532111111111 223444555555543 111 2355555555544
Q ss_pred -------CCCCCCcEEEccCCCCCCCCC
Q 007860 561 -------QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 561 -------~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
....+|+.|++++|++...++
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I~~w~s 318 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNIRDWRS 318 (505)
T ss_pred ccchhhhcccccceeeecccCccccccc
Confidence 345567777777777766554
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.32 E-value=8.6e-08 Score=93.77 Aligned_cols=118 Identities=18% Similarity=0.157 Sum_probs=85.5
Q ss_pred ccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCC
Q 007860 410 WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP 488 (587)
Q Consensus 410 ~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP 488 (587)
.+.+.|........+.++.|++++|.|.. + ..+..|.+|+.||||+|.++ .+..+-.. -++++|.|+.|.+. .+.
T Consensus 293 ~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE-~LS 368 (490)
T KOG1259|consen 293 GNLITQIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIE-TLS 368 (490)
T ss_pred ccchhhhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHh-hhh
Confidence 44556655544556789999999999872 3 34888999999999999998 55444444 78899999999887 332
Q ss_pred ccccCCCCCCEEEccCCcCcccCc--hhhhhcccCCceeeccccccceEECCCCcccc
Q 007860 489 DSLTSSSKLQLVLLNNNLLEGRVP--EELYSIGVHGGAFDLSVVYICCIRRGRNDYDF 544 (587)
Q Consensus 489 ~~l~~l~~L~~L~Ls~N~l~g~ip--~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~ 544 (587)
.++.+-+|..||+++|++. .+. ..+++ ++.|+++.|.+|++.+
T Consensus 369 -GL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~-----------LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 369 -GLRKLYSLVNLDLSSNQIE-ELDEVNHIGN-----------LPCLETLRLTGNPLAG 413 (490)
T ss_pred -hhHhhhhheeccccccchh-hHHHhccccc-----------ccHHHHHhhcCCCccc
Confidence 4677888999999999996 232 22333 4457777888888874
No 38
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.30 E-value=7e-07 Score=95.33 Aligned_cols=148 Identities=25% Similarity=0.369 Sum_probs=110.9
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C-CccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q-SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (587)
Q Consensus 428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~-~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 505 (587)
.+++..|.+. .-...+..++.++.|++.+|.++ .+|+.... . +|+.|++++|++. .+|..++.++.|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4777777764 23445667789999999999999 88888887 5 9999999999999 88878999999999999999
Q ss_pred cCcccCchhhhhcccCCceeecc-------------ccccceEECCCCccccccc------ccccccccccccc------
Q 007860 506 LLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY------ 560 (587)
Q Consensus 506 ~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i------ 560 (587)
+++ .+|...+... .|+.|+++ ...|+.|.+++|+.. ..+ ..+..|.+.+|++
T Consensus 174 ~l~-~l~~~~~~~~-~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLS-NLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLPES 250 (394)
T ss_pred hhh-hhhhhhhhhh-hhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeeccch
Confidence 999 7887665444 46666666 233667777777422 222 2334444566654
Q ss_pred -CCCCCCcEEEccCCCCCCCCC
Q 007860 561 -QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 561 -~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
..+..++.|++++|+++.++.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~ 272 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS 272 (394)
T ss_pred hccccccceecccccccccccc
Confidence 567778999999999988876
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.27 E-value=4.3e-07 Score=69.53 Aligned_cols=59 Identities=34% Similarity=0.474 Sum_probs=52.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcC
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l 483 (587)
+|+.|++++|+++...+..|..+++|++|++++|.++..-|..+.. ++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4788999999999777789999999999999999999665667777 9999999999986
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.90 E-value=4.8e-06 Score=89.52 Aligned_cols=150 Identities=26% Similarity=0.284 Sum_probs=94.4
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.|++..|.|.. +...+..+.+|+.|+|++|.|+ .+. .+.. ..|+.|++++|.++ .+. .+..+.+|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~~N~i~-~~~-~~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLSGNLIS-DIS-GLESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhh-cccchhhhhcchheeccccccc-ccc-chhhccchhhheeccCcch-hcc-CCccchhhhcccC
Confidence 458889999999884 3333778899999999999998 333 2334 67999999999998 444 3666889999999
Q ss_pred cCCcCcccCchh-hhhcccCCceeecc------------ccccceEECCCCccccccc--c--c--cccccccccccC--
Q 007860 503 NNNLLEGRVPEE-LYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP--Q--D--LMSLSAKRNRYQ-- 561 (587)
Q Consensus 503 s~N~l~g~ip~~-l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p--~--~--L~~L~l~~N~i~-- 561 (587)
++|.+. .+... +..+. .++.+.+. +..+..+++..|.++-.-+ . . |+.+.+.+|++.
T Consensus 170 ~~n~i~-~ie~~~~~~~~-~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~ 247 (414)
T KOG0531|consen 170 SYNRIV-DIENDELSELI-SLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRS 247 (414)
T ss_pred Ccchhh-hhhhhhhhhcc-chHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccc
Confidence 999997 34442 22222 34444444 2233334555555542111 1 1 556666666653
Q ss_pred -----CCCCCcEEEccCCCCCCCC
Q 007860 562 -----RQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 562 -----~l~~L~~L~Ls~N~l~~~P 580 (587)
.+..+..|++.+|++..+.
T Consensus 248 ~~~~~~~~~l~~l~~~~n~~~~~~ 271 (414)
T KOG0531|consen 248 PEGLENLKNLPVLDLSSNRISNLE 271 (414)
T ss_pred cccccccccccccchhhccccccc
Confidence 2455666666666655543
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.81 E-value=2.3e-06 Score=74.89 Aligned_cols=89 Identities=25% Similarity=0.408 Sum_probs=56.2
Q ss_pred EEEEEcCCCCCcccCchhhc---CCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 426 ISQIDLGSQGLKGYISDKIS---LLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~---~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
+..++|+++.+- .+++... ....|+..+|++|.+. ..|+.+.. +.++.|+|++|+++ .+|+++..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344566666553 4444433 3344555577777776 56666655 56777777777777 677777777777777
Q ss_pred EccCCcCcccCchhhhhc
Q 007860 501 LLNNNLLEGRVPEELYSI 518 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~ 518 (587)
+++.|.|. ..|.-+..+
T Consensus 106 Nl~~N~l~-~~p~vi~~L 122 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPL 122 (177)
T ss_pred ccccCccc-cchHHHHHH
Confidence 77777776 566665553
No 42
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.80 E-value=1.9e-05 Score=55.97 Aligned_cols=40 Identities=35% Similarity=0.563 Sum_probs=31.1
Q ss_pred CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCc
Q 007860 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVP 512 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip 512 (587)
++|++|++++|+++ .+|..+++|++|+.|++++|+++ .++
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~-~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS-DIS 40 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS-BEG
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC-CCc
Confidence 46888888888888 67877888999999999999887 443
No 43
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=3.1e-06 Score=87.06 Aligned_cols=147 Identities=22% Similarity=0.218 Sum_probs=99.0
Q ss_pred ceeEEEEEcCCCCCcccCc-hhhcCCCCCCEEEccCCCCCCCCCC-CCC-C-CCccEEeccCCcCCccCCccc-cCCCCC
Q 007860 423 AVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPS-GLG-Q-QSLVRLDLSDNQFTGSIPDSL-TSSSKL 497 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~-~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L 497 (587)
...|+.+.|.+........ .-...|++++.||||+|-|...-|- .+. + ++|+.|+|+.|+|.-..-... ..++.|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4567888888887753222 3567899999999999998732221 122 3 899999999999973322221 256789
Q ss_pred CEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc------ccccccccccccccccc---------CC
Q 007860 498 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD------FGLPQDLMSLSAKRNRY---------QR 562 (587)
Q Consensus 498 ~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~------~~~p~~L~~L~l~~N~i---------~~ 562 (587)
+.|.|+.+.|+.. .+..+. +..++|+.|+|..|... ..++..|+.|+|++|.+ ..
T Consensus 200 K~L~l~~CGls~k---~V~~~~-------~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 200 KQLVLNSCGLSWK---DVQWIL-------LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred heEEeccCCCCHH---HHHHHH-------HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence 9999999999842 222221 12556677777777321 24678899999999977 45
Q ss_pred CCCCcEEEccCCCCCCC
Q 007860 563 QKSLMLLEMESQHAKGL 579 (587)
Q Consensus 563 l~~L~~L~Ls~N~l~~~ 579 (587)
++.|..|+++.+.+..+
T Consensus 270 l~~L~~Lnls~tgi~si 286 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASI 286 (505)
T ss_pred ccchhhhhccccCcchh
Confidence 66677777777766544
No 44
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.75 E-value=3.1e-06 Score=74.14 Aligned_cols=115 Identities=20% Similarity=0.310 Sum_probs=89.3
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.++|++|.+....+..-...+.++.|+|++|.|+ .+|..+.. +.|+.|+++.|.|. ..|+.+..|.+|..|+..
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCC
Confidence 5888999999998544444456679999999999999 99999888 99999999999999 788888889999999999
Q ss_pred CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccc
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSL 553 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L 553 (587)
+|.+. ++|-.+.-.. +.-| .+++++.+.+.-+..++.+
T Consensus 132 ~na~~-eid~dl~~s~---------~~al--~~lgnepl~~~~~~klqa~ 169 (177)
T KOG4579|consen 132 ENARA-EIDVDLFYSS---------LPAL--IKLGNEPLGDETKKKLQAL 169 (177)
T ss_pred CCccc-cCcHHHhccc---------cHHH--HHhcCCcccccCccccccc
Confidence 99998 7886643221 1111 2445677776666655443
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.69 E-value=8e-07 Score=96.27 Aligned_cols=102 Identities=25% Similarity=0.319 Sum_probs=75.1
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
|...+.+.|.+. .+..++.-++.|+.|||++|+++ ... .+.. ++|++|||++|.|+ .+|..-..-.+|+.|.+++
T Consensus 166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccccchhhhhheeeeecc
Confidence 556778888887 67778888999999999999998 333 5556 89999999999999 7886322223599999999
Q ss_pred CcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF 544 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~ 544 (587)
|.++. + ..+.+ +.+|+.|||+.|-+.+
T Consensus 242 N~l~t-L-~gie~-----------LksL~~LDlsyNll~~ 268 (1096)
T KOG1859|consen 242 NALTT-L-RGIEN-----------LKSLYGLDLSYNLLSE 268 (1096)
T ss_pred cHHHh-h-hhHHh-----------hhhhhccchhHhhhhc
Confidence 99872 2 22333 3346677777777664
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.67 E-value=3.9e-06 Score=91.09 Aligned_cols=117 Identities=26% Similarity=0.275 Sum_probs=71.2
Q ss_pred CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeec
Q 007860 449 NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL 527 (587)
Q Consensus 449 ~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~L 527 (587)
.|...+.+.|.|. ....++.. +.|+.|||++|+++ .+- .+..|++|++|||+.|.+. .+|. +...
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~-~vp~-l~~~--------- 230 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLR-HVPQ-LSMV--------- 230 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhc-cccc-cchh---------
Confidence 3455556666665 45555555 66777777777776 333 5666777777777777776 3442 1111
Q ss_pred cccccceEECCCCcccc----ccccccccccccccccC---------CCCCCcEEEccCCCCCCCC
Q 007860 528 SVVYICCIRRGRNDYDF----GLPQDLMSLSAKRNRYQ---------RQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 528 sl~~L~~L~L~~N~l~~----~~p~~L~~L~l~~N~i~---------~l~~L~~L~Ls~N~l~~~P 580 (587)
-.+|+.|.|++|.++. +-.++|..||+++|-|. .+..|..|+|.+|.|-..|
T Consensus 231 -gc~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p 295 (1096)
T KOG1859|consen 231 -GCKLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP 295 (1096)
T ss_pred -hhhheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence 2335566777777652 11256777888888763 3345566788888776655
No 47
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.58 E-value=3e-05 Score=77.93 Aligned_cols=151 Identities=18% Similarity=0.187 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCcccCchh----hcCCCCCCEEEccCCCCCCC-------------CCCCCCC-CCccEEeccCCcCCcc
Q 007860 425 VISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLGGT-------------LPSGLGQ-QSLVRLDLSDNQFTGS 486 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~----l~~l~~L~~L~Ls~N~l~g~-------------ip~~~~~-~~L~~L~Ls~N~l~g~ 486 (587)
+|+.|+||.|.|...-++. +..+..|++|.|.+|-+.-. .-.-.+. +.|+++...+|++...
T Consensus 93 ~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ 172 (382)
T KOG1909|consen 93 KLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENG 172 (382)
T ss_pred ceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccc
Confidence 4777888888776433333 45567777777777776511 0111233 6677777777776511
Q ss_pred ----CCccccCCCCCCEEEccCCcCc--cc--CchhhhhcccCCceeecc------------------ccccceEECCCC
Q 007860 487 ----IPDSLTSSSKLQLVLLNNNLLE--GR--VPEELYSIGVHGGAFDLS------------------VVYICCIRRGRN 540 (587)
Q Consensus 487 ----iP~~l~~l~~L~~L~Ls~N~l~--g~--ip~~l~~~~~~L~~l~Ls------------------l~~L~~L~L~~N 540 (587)
+-..+...+.|+.+.++.|.+. |. +-..+..+. +|+.|||. +++|+.|+++.+
T Consensus 173 ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~-~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 173 GATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCP-HLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred cHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCC-cceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1122334456666666666553 11 001222222 45555555 556777788777
Q ss_pred cccc-----------cccccccccccccccc------------CCCCCCcEEEccCCCC
Q 007860 541 DYDF-----------GLPQDLMSLSAKRNRY------------QRQKSLMLLEMESQHA 576 (587)
Q Consensus 541 ~l~~-----------~~p~~L~~L~l~~N~i------------~~l~~L~~L~Ls~N~l 576 (587)
.++. ..-+.|+.|.+.+|.| ...+.|.+|+|+.|++
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 7652 1124577788888876 4577888889999888
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.50 E-value=1.4e-05 Score=85.83 Aligned_cols=149 Identities=24% Similarity=0.279 Sum_probs=95.7
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.+..+.++.|.+.. +-..+..+++|+.|++..|.|. .+...+.. ++|++|++++|+|+ .+. .+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~-~i~-~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKIT-KLE-GLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccc-ccc-chhhccchhhheec
Confidence 35556688888763 4455889999999999999999 55554666 99999999999999 443 36778889999999
Q ss_pred CCcCcccCchhhhhcccCCceeeccc--------------cccceEECCCCccccc----cccccccccccccccCCCCC
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLSV--------------VYICCIRRGRNDYDFG----LPQDLMSLSAKRNRYQRQKS 565 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl--------------~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i~~l~~ 565 (587)
+|.++ .+.. +..+ ..|+.++++. .+|+.+.+++|.+.-. ....+..+++..|++..+..
T Consensus 149 ~N~i~-~~~~-~~~l-~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~ 225 (414)
T KOG0531|consen 149 GNLIS-DISG-LESL-KSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEG 225 (414)
T ss_pred cCcch-hccC-Cccc-hhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccC
Confidence 99998 3432 2222 2344444441 1233344444444310 00122233455566633332
Q ss_pred --------CcEEEccCCCCCCCC
Q 007860 566 --------LMLLEMESQHAKGLP 580 (587)
Q Consensus 566 --------L~~L~Ls~N~l~~~P 580 (587)
|+.+++++|++...|
T Consensus 226 l~~~~~~~L~~l~l~~n~i~~~~ 248 (414)
T KOG0531|consen 226 LNELVMLHLRELYLSGNRISRSP 248 (414)
T ss_pred cccchhHHHHHHhcccCcccccc
Confidence 667788888877653
No 49
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.46 E-value=2e-05 Score=79.19 Aligned_cols=84 Identities=30% Similarity=0.369 Sum_probs=55.0
Q ss_pred eEEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCC---CCCCCCCCCC-------CC-CCccEEeccCCcCCccCCc
Q 007860 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTN---SLGGTLPSGL-------GQ-QSLVRLDLSDNQFTGSIPD 489 (587)
Q Consensus 425 ~l~~L~L~~n~l~g----~~p~~l~~l~~L~~L~Ls~N---~l~g~ip~~~-------~~-~~L~~L~Ls~N~l~g~iP~ 489 (587)
.++.|+|++|.+.- .+...+.+.+.|+..++|.- ++...+|+.+ .. ++|++||||.|-|.-.-++
T Consensus 31 s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~ 110 (382)
T KOG1909|consen 31 SLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIR 110 (382)
T ss_pred ceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchH
Confidence 36778888888762 34455667777888777753 2222344432 22 5788888888888754444
Q ss_pred c----ccCCCCCCEEEccCCcCc
Q 007860 490 S----LTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 490 ~----l~~l~~L~~L~Ls~N~l~ 508 (587)
. +.++..|++|.|.+|-+.
T Consensus 111 ~l~~ll~s~~~L~eL~L~N~Glg 133 (382)
T KOG1909|consen 111 GLEELLSSCTDLEELYLNNCGLG 133 (382)
T ss_pred HHHHHHHhccCHHHHhhhcCCCC
Confidence 3 346678888888888775
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.00011 Score=72.36 Aligned_cols=80 Identities=25% Similarity=0.278 Sum_probs=38.2
Q ss_pred EEEEEcCCCCCcc--cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc-CCccccCCCCCCEEE
Q 007860 426 ISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS-IPDSLTSSSKLQLVL 501 (587)
Q Consensus 426 l~~L~L~~n~l~g--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~-iP~~l~~l~~L~~L~ 501 (587)
++.|||.+|.|+. .+-.-+.+|+.|+.|+|+.|.+...|-..-.. .+|+.|-|.+..+... .-..+..+++++.|+
T Consensus 73 v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelH 152 (418)
T KOG2982|consen 73 VKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELH 152 (418)
T ss_pred hhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhh
Confidence 4445555555542 22233445555666666666555333222122 5555555555555422 222234455555555
Q ss_pred ccCC
Q 007860 502 LNNN 505 (587)
Q Consensus 502 Ls~N 505 (587)
++.|
T Consensus 153 mS~N 156 (418)
T KOG2982|consen 153 MSDN 156 (418)
T ss_pred hccc
Confidence 5555
No 51
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.28 E-value=0.00014 Score=51.51 Aligned_cols=35 Identities=31% Similarity=0.531 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG 461 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~ 461 (587)
|++|++++|+|+ .+|+.+++|++|+.|++++|+++
T Consensus 3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 555666666666 34555666666666666666665
No 52
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.12 E-value=0.00023 Score=82.61 Aligned_cols=103 Identities=26% Similarity=0.262 Sum_probs=77.8
Q ss_pred eeEEEEEcCCCC--CcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 424 VVISQIDLGSQG--LKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 424 ~~l~~L~L~~n~--l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
+.++.|-+..|. +.-...+.|..|+.|+.||||+|.=-+.+|..++. -+|++|+|++..+. .+|..+++|++|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 357777788875 44344455778888999999987777788888888 88889999988888 888888888888889
Q ss_pred EccCCcCcccCchhhhhcccCCceeecc
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
++..+.-...+|.-...+. +|++|.+.
T Consensus 624 nl~~~~~l~~~~~i~~~L~-~Lr~L~l~ 650 (889)
T KOG4658|consen 624 NLEVTGRLESIPGILLELQ-SLRVLRLP 650 (889)
T ss_pred ccccccccccccchhhhcc-cccEEEee
Confidence 8888776545555444444 47777665
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.00035 Score=68.19 Aligned_cols=18 Identities=17% Similarity=0.148 Sum_probs=11.3
Q ss_pred CCCCCCcEEEccCCCCCC
Q 007860 561 QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 561 ~~l~~L~~L~Ls~N~l~~ 578 (587)
..+.+|+.|||+.|-++-
T Consensus 211 ~y~~~LevLDlqDNtft~ 228 (388)
T COG5238 211 FYSHSLEVLDLQDNTFTL 228 (388)
T ss_pred HHhCcceeeeccccchhh
Confidence 345667777777776553
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.92 E-value=0.0012 Score=61.94 Aligned_cols=77 Identities=25% Similarity=0.370 Sum_probs=47.9
Q ss_pred EEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc-CCCCCCEEEcc
Q 007860 427 SQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT-SSSKLQLVLLN 503 (587)
Q Consensus 427 ~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~Ls 503 (587)
+.++|.+.++.- ...++ -+.....+||++|.+. .++ .+.. +.|.+|.|++|+++ .|-+.+. -+++|+.|.|.
T Consensus 22 ~e~~LR~lkip~--ienlg~~~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 22 RELDLRGLKIPV--IENLGATLDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cccccccccccc--hhhccccccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEec
Confidence 446677666541 11232 2346677888888876 333 3445 77888888888887 4444444 34667888888
Q ss_pred CCcCc
Q 007860 504 NNLLE 508 (587)
Q Consensus 504 ~N~l~ 508 (587)
+|.|.
T Consensus 97 nNsi~ 101 (233)
T KOG1644|consen 97 NNSIQ 101 (233)
T ss_pred Ccchh
Confidence 88776
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.76 E-value=0.0045 Score=65.24 Aligned_cols=121 Identities=16% Similarity=0.282 Sum_probs=67.5
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccC-CCCCCCCCCCCCCCCccEEeccCC-cCCccCCccccCCCCCCEEEc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQQSLVRLDLSDN-QFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L~L 502 (587)
.++.|+++++.++ .+|. -..+|+.|.+++ +.++ .+|..+. .+|+.|++++| ++. .+|. +|+.|++
T Consensus 53 ~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLt-sLP~~LP-~nLe~L~Ls~Cs~L~-sLP~------sLe~L~L 119 (426)
T PRK15386 53 ASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLT-TLPGSIP-EGLEKLTVCHCPEIS-GLPE------SVRSLEI 119 (426)
T ss_pred CCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcc-cCCchhh-hhhhheEccCccccc-cccc------ccceEEe
Confidence 3567888887776 3441 123588888876 4443 5665332 67888888887 454 5664 3556666
Q ss_pred cCCcCc--ccCchhhhhcccCC-c-----eeecc-ccccceEECCCCccc---ccccccccccccccc
Q 007860 503 NNNLLE--GRVPEELYSIGVHG-G-----AFDLS-VVYICCIRRGRNDYD---FGLPQDLMSLSAKRN 558 (587)
Q Consensus 503 s~N~l~--g~ip~~l~~~~~~L-~-----~l~Ls-l~~L~~L~L~~N~l~---~~~p~~L~~L~l~~N 558 (587)
+.|... +.+|..+..+.... + .+.-. -.+|+.|.+++|... ..+|.+|+.|.++.|
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 665532 35666554432100 0 00000 135667777666543 236667777776655
No 56
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.76 E-value=0.0039 Score=65.65 Aligned_cols=118 Identities=17% Similarity=0.252 Sum_probs=74.2
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccC-CcCCccCCccccCCCCCCEEEccCC-cCcccCchhhhhccc
Q 007860 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNN-LLEGRVPEELYSIGV 520 (587)
Q Consensus 443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N-~l~g~ip~~l~~~~~ 520 (587)
.+..+..++.|++++|.|+ .+|. + ..+|+.|.+++ ++++ .+|..+. ++|+.|++++| ++. .+|..+..
T Consensus 47 r~~~~~~l~~L~Is~c~L~-sLP~-L-P~sLtsL~Lsnc~nLt-sLP~~LP--~nLe~L~Ls~Cs~L~-sLP~sLe~--- 116 (426)
T PRK15386 47 QIEEARASGRLYIKDCDIE-SLPV-L-PNELTEITIENCNNLT-TLPGSIP--EGLEKLTVCHCPEIS-GLPESVRS--- 116 (426)
T ss_pred HHHHhcCCCEEEeCCCCCc-ccCC-C-CCCCcEEEccCCCCcc-cCCchhh--hhhhheEccCccccc-ccccccce---
Confidence 3556788999999999988 7772 1 16799999987 4554 7787553 58999999998 554 67765433
Q ss_pred CCceeecc----------ccccceEECCCCc------cccccccccccccccccccC-----CCCCCcEEEccCC
Q 007860 521 HGGAFDLS----------VVYICCIRRGRND------YDFGLPQDLMSLSAKRNRYQ-----RQKSLMLLEMESQ 574 (587)
Q Consensus 521 ~L~~l~Ls----------l~~L~~L~L~~N~------l~~~~p~~L~~L~l~~N~i~-----~l~~L~~L~Ls~N 574 (587)
|+++ -.+|+.|.+..++ +...+|.+|+.|++++|... -..+|+.|.++.|
T Consensus 117 ----L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n 187 (426)
T PRK15386 117 ----LEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE 187 (426)
T ss_pred ----EEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence 3332 1234555553221 11135666666666665542 1235666666655
No 57
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.00061 Score=67.33 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=81.3
Q ss_pred EEEEEcCCCCCcccC-chhh-cCCCCCCEEEccCCCCCCC--CCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 426 ISQIDLGSQGLKGYI-SDKI-SLLSNLVNLNLSTNSLGGT--LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 426 l~~L~L~~n~l~g~~-p~~l-~~l~~L~~L~Ls~N~l~g~--ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
++.|-+.++.|...- -..| ...+.++.|||.+|.++.. +-.-+.+ +.|++|+|+.|.+...|-..-..+.+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 444555555553211 1122 3567899999999999831 2222334 899999999999984433322455789999
Q ss_pred EccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccc
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKR 557 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~ 557 (587)
-|.+..+...--..+..-...++.|.+|.++++.+.+..|..+ ..-+.+.+|.+..
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e-~~s~~v~tlh~~~ 182 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE-DWSTEVLTLHQLP 182 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhcccccccc-ccchhhhhhhcCC
Confidence 9999888754333433333346677777777777777777665 3333444554333
No 58
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=96.46 E-value=0.0015 Score=76.00 Aligned_cols=83 Identities=28% Similarity=0.392 Sum_probs=74.4
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
++.|+.|||++|.=-+.+|..+++|-+|++|+|++..+. .+|.++.. ..|.+|++..+.-...+|..+..|.+|++|.
T Consensus 570 m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~ 648 (889)
T KOG4658|consen 570 LPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLR 648 (889)
T ss_pred CcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEE
Confidence 457999999998877899999999999999999999999 99999999 9999999999887667777777799999999
Q ss_pred ccCCc
Q 007860 502 LNNNL 506 (587)
Q Consensus 502 Ls~N~ 506 (587)
+..-.
T Consensus 649 l~~s~ 653 (889)
T KOG4658|consen 649 LPRSA 653 (889)
T ss_pred eeccc
Confidence 87654
No 59
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.20 E-value=0.00025 Score=69.97 Aligned_cols=147 Identities=22% Similarity=0.217 Sum_probs=95.6
Q ss_pred eEEEEEcCCCCCcc-cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC-cCCc-cCCccccCCCCCCEE
Q 007860 425 VISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTG-SIPDSLTSSSKLQLV 500 (587)
Q Consensus 425 ~l~~L~L~~n~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~L 500 (587)
+++.|||+...|+. .+-.-++.+.+|+.|.|.++++...+-..++. .+|+.|+|+.. .|+. ..---+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 48889999888763 23345677889999999999999888888888 99999999874 3441 111235678889999
Q ss_pred EccCCcCcccCch-hhhhcccCCceeecc-----------------ccccceEECCCCc-ccc-------cccccccccc
Q 007860 501 LLNNNLLEGRVPE-ELYSIGVHGGAFDLS-----------------VVYICCIRRGRND-YDF-------GLPQDLMSLS 554 (587)
Q Consensus 501 ~Ls~N~l~g~ip~-~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~-l~~-------~~p~~L~~L~ 554 (587)
+|+.+.+....-. .......+|..|+|+ .++|.+|||++|. ++. .+ +.|++|.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf-~~L~~lS 344 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKF-NYLQHLS 344 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhc-chheeee
Confidence 9998877533221 122222345555555 6677788888763 321 11 2356666
Q ss_pred ccccc---------cCCCCCCcEEEcc
Q 007860 555 AKRNR---------YQRQKSLMLLEME 572 (587)
Q Consensus 555 l~~N~---------i~~l~~L~~L~Ls 572 (587)
++++- +...+.|..||.-
T Consensus 345 lsRCY~i~p~~~~~l~s~psl~yLdv~ 371 (419)
T KOG2120|consen 345 LSRCYDIIPETLLELNSKPSLVYLDVF 371 (419)
T ss_pred hhhhcCCChHHeeeeccCcceEEEEec
Confidence 66652 2566667776653
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.00 E-value=0.0079 Score=56.58 Aligned_cols=80 Identities=29% Similarity=0.400 Sum_probs=65.2
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCc--cccCCCCCCEE
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLV 500 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L 500 (587)
....+||++|.+.. -+.|..++.|+.|.|++|+|+ .|.+.+.. ++|..|.|.+|+|. .+-+ -+..+++|+.|
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYL 118 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hhhhcchhccCCcccee
Confidence 35679999999852 345778899999999999999 77777776 88999999999987 3322 26688999999
Q ss_pred EccCCcCc
Q 007860 501 LLNNNLLE 508 (587)
Q Consensus 501 ~Ls~N~l~ 508 (587)
.+-+|+.+
T Consensus 119 tll~Npv~ 126 (233)
T KOG1644|consen 119 TLLGNPVE 126 (233)
T ss_pred eecCCchh
Confidence 99999887
No 61
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.99 E-value=0.0025 Score=62.15 Aligned_cols=38 Identities=26% Similarity=0.456 Sum_probs=16.9
Q ss_pred CCccEEeccCC--cCCccCCccccCCCCCCEEEccCCcCc
Q 007860 471 QSLVRLDLSDN--QFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 471 ~~L~~L~Ls~N--~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 508 (587)
++|+.|.+|.| +..+.++.-.-.+++|++|++++|++.
T Consensus 65 p~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 65 PKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred chhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 44444444444 333333333333345555555555443
No 62
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=95.69 E-value=0.016 Score=40.59 Aligned_cols=39 Identities=31% Similarity=0.574 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHhcCC-C--CCCCCCCCCCCCCCCcCccceeec
Q 007860 376 PEQVIAMRALKESLRV-P--DRMGWNGDPCAPTNWDAWEGITCH 416 (587)
Q Consensus 376 p~~~~aL~~lk~~~~~-~--~~~~w~g~pc~~~~~~~~~gv~c~ 416 (587)
++|..+|+++|..+.. + ...+|+... ....|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~~~--~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNPSS--DSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--TT----S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCCcC--CCCCeeeccEEeC
Confidence 5789999999998874 3 135897431 0011689999995
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.68 E-value=0.0032 Score=71.51 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=67.2
Q ss_pred CceeEEEEEcCCCCCcc-cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCC--ccccCCCCC
Q 007860 422 TAVVISQIDLGSQGLKG-YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIP--DSLTSSSKL 497 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP--~~l~~l~~L 497 (587)
.++.|+.|.+.+-.+.. .+..-..++++|..||+|+.+++ .+ .+++. ++|+.|.+.+=.+. ... ..+.+|++|
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e-~~~~l~~LF~L~~L 222 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFE-SYQDLIDLFNLKKL 222 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCC-chhhHHHHhcccCC
Confidence 35667778877766642 23334457788888888888877 33 45556 77777777665554 111 245677888
Q ss_pred CEEEccCCcCccc--CchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860 498 QLVLLNNNLLEGR--VPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF 544 (587)
Q Consensus 498 ~~L~Ls~N~l~g~--ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~ 544 (587)
++||+|....... +....-++... +++|+.||.|+..+..
T Consensus 223 ~vLDIS~~~~~~~~~ii~qYlec~~~-------LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 223 RVLDISRDKNNDDTKIIEQYLECGMV-------LPELRFLDCSGTDINE 264 (699)
T ss_pred CeeeccccccccchHHHHHHHHhccc-------CccccEEecCCcchhH
Confidence 8888887665421 11222222111 4566667776666554
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=95.58 E-value=0.0041 Score=70.65 Aligned_cols=101 Identities=21% Similarity=0.299 Sum_probs=67.1
Q ss_pred eEEEEEcCCCCCc-ccCchhh-cCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 425 VISQIDLGSQGLK-GYISDKI-SLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 425 ~l~~L~L~~n~l~-g~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
+|++|++++...- ..-|..+ ..||+|+.|.+++=.+...--..++. ++|..||+|+.+++ .+ ..+++|++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHH
Confidence 5788888886642 2233334 46699999999987775332223343 89999999999988 44 668899999999
Q ss_pred EccCCcCcc-cCchhhhhcccCCceeecc
Q 007860 501 LLNNNLLEG-RVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 501 ~Ls~N~l~g-~ip~~l~~~~~~L~~l~Ls 528 (587)
.+.+=.+.. ..-..++++. +|+.||+|
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~-~L~vLDIS 228 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLK-KLRVLDIS 228 (699)
T ss_pred hccCCCCCchhhHHHHhccc-CCCeeecc
Confidence 888766652 1123455544 35555555
No 65
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.16 E-value=0.002 Score=63.85 Aligned_cols=56 Identities=25% Similarity=0.325 Sum_probs=30.4
Q ss_pred CCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 449 NLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 449 ~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
.||+||||+..++..--.. +.. .+|+.|.|.++++...+-..+++-..|+.|+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 3666666666554221111 122 5566666666666655555566666666666654
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.83 E-value=0.028 Score=55.29 Aligned_cols=148 Identities=20% Similarity=0.240 Sum_probs=92.7
Q ss_pred ceeEEEEEcCCCCCcccCchh----hcCCCCCCEEEccCCCCCCCCCCCC-------------CC-CCccEEeccCCcCC
Q 007860 423 AVVISQIDLGSQGLKGYISDK----ISLLSNLVNLNLSTNSLGGTLPSGL-------------GQ-QSLVRLDLSDNQFT 484 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~----l~~l~~L~~L~Ls~N~l~g~ip~~~-------------~~-~~L~~L~Ls~N~l~ 484 (587)
|++++.++||.|.+....|+. ++.-+.|++|.|++|.+.-.--..+ .. +.|+......|+|.
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 467999999999998777765 4566889999999998862211112 23 78999999999987
Q ss_pred ccCCcc-----ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-ccccceEECCCCccccc--------cc--c
Q 007860 485 GSIPDS-----LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-VVYICCIRRGRNDYDFG--------LP--Q 548 (587)
Q Consensus 485 g~iP~~-----l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-l~~L~~L~L~~N~l~~~--------~p--~ 548 (587)
.-|.. +..-..|+.+.+..|-|. |..+.-+ -.+.+. +++|+.|+|..|-|+-. +| +
T Consensus 171 -ngs~~~~a~~l~sh~~lk~vki~qNgIr---pegv~~L----~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 171 -NGSKELSAALLESHENLKEVKIQQNGIR---PEGVTML----AFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred -cCcHHHHHHHHHhhcCceeEEeeecCcC---cchhHHH----HHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 33332 222257888889999886 3322211 111111 56788899999988631 11 2
Q ss_pred cccccccccccc--------------CCCCCCcEEEccCCCCCC
Q 007860 549 DLMSLSAKRNRY--------------QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 549 ~L~~L~l~~N~i--------------~~l~~L~~L~Ls~N~l~~ 578 (587)
.|+.|.+..+.+ -...+|+.|....|.+.+
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 245555555543 223456666666665543
No 67
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.83 E-value=0.013 Score=34.64 Aligned_cols=19 Identities=58% Similarity=0.777 Sum_probs=10.6
Q ss_pred ccEEeccCCcCCccCCcccc
Q 007860 473 LVRLDLSDNQFTGSIPDSLT 492 (587)
Q Consensus 473 L~~L~Ls~N~l~g~iP~~l~ 492 (587)
|++|||++|+|+ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 555566666555 5555444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.73 E-value=0.02 Score=55.97 Aligned_cols=95 Identities=21% Similarity=0.219 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCC--CCCCCCCCCCCC-CCccEEeccCCcCCccCCcc---ccCCCCCCE
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTN--SLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDS---LTSSSKLQL 499 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N--~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~---l~~l~~L~~ 499 (587)
++.|.+.+..++. -..+-.|++|+.|.+|.| +..+.++.-... ++|++|+|+.|++. ++.. +..+.+|..
T Consensus 45 le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~--~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 45 LELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK--DLSTLRPLKELENLKS 120 (260)
T ss_pred hhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc--cccccchhhhhcchhh
Confidence 4445555555441 123456789999999999 667666665555 99999999999986 2333 456677888
Q ss_pred EEccCCcCcccCc---hhhhhcccCCcee
Q 007860 500 VLLNNNLLEGRVP---EELYSIGVHGGAF 525 (587)
Q Consensus 500 L~Ls~N~l~g~ip---~~l~~~~~~L~~l 525 (587)
|++.+|.... +- ...+.+..+|++|
T Consensus 121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~L 148 (260)
T KOG2739|consen 121 LDLFNCSVTN-LDDYREKVFLLLPSLKYL 148 (260)
T ss_pred hhcccCCccc-cccHHHHHHHHhhhhccc
Confidence 9998887764 22 2344444444444
No 69
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=94.73 E-value=0.02 Score=56.22 Aligned_cols=122 Identities=17% Similarity=0.150 Sum_probs=78.9
Q ss_pred HHHHhhhhhhccCCCCCcEEEccCCCCCCcCCCCceEeeCCCceecCCcccc------c-CCCCCCCCCCceeeeeCCCC
Q 007860 14 LLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------S-EPLHFRFPHEKTLRYFPPSS 86 (587)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~i~cG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~-~~~~~~~~~y~t~R~f~~~~ 86 (587)
+.+++..+.+|+-+...-+.+|||+.. .+|..|+.|-.|-. -..|..... . ....-....|+|+|+-..
T Consensus 44 lv~v~~ga~Taa~~~svI~aVncGgda-avd~ygI~f~aD~~-~~VGrasd~G~~l~i~~raeeed~ily~ter~nee-- 119 (355)
T KOG3593|consen 44 LVDVVRGAPTAALPSSVIPAVNCGGDA-AVDNYGIRFAADPL-EGVGRASDYGMVLGIGCRAEEEDIILYQTERYNEE-- 119 (355)
T ss_pred eeeeeccCccccCchhhhheeccCChh-hhcccceEeecccc-ccccccCCccceeeccccCChhhhhhhhhcccchh--
Confidence 344555566666666555789999974 48888999988531 001211110 0 111112357999999654
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEEC-CEEEEecCCCCcccc
Q 007860 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE-GTLVFSWRSPWPEGL 142 (587)
Q Consensus 87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~-~~~~l~~~~~~~~~~ 142 (587)
.|.|..|++..|.|-+=+.|..--|+.. +.-.|||-+| ...+....|.+...+
T Consensus 120 --tFgyd~pik~dgdyalvlkfaevyF~~~-q~kvfdvrln~sh~vVk~ldi~~~vg 173 (355)
T KOG3593|consen 120 --TFGYDVPIKEDGDYALVLKFAEVYFKTC-QHKVFDVRLNCSHCVVKALDIFDQVG 173 (355)
T ss_pred --hhcccccccCCCceehhhhHHHHHHHhh-hhhheeeeeccceeEEeccchhhhcC
Confidence 3789999988899998899932114432 3568999999 888888877765443
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.66 E-value=0.042 Score=32.45 Aligned_cols=18 Identities=28% Similarity=0.490 Sum_probs=9.7
Q ss_pred CCEEEccCCcCcccCchhh
Q 007860 497 LQLVLLNNNLLEGRVPEEL 515 (587)
Q Consensus 497 L~~L~Ls~N~l~g~ip~~l 515 (587)
|++|+|++|+|+ .+|..+
T Consensus 2 L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp ESEEEETSSEES-EEGTTT
T ss_pred ccEEECCCCcCE-eCChhh
Confidence 455555555555 455543
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.50 E-value=0.069 Score=29.40 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=8.5
Q ss_pred CCcEEEccCCCCCCCC
Q 007860 565 SLMLLEMESQHAKGLP 580 (587)
Q Consensus 565 ~L~~L~Ls~N~l~~~P 580 (587)
+|+.|+|++|+|+.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 5677777777777665
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=91.79 E-value=0.0064 Score=58.30 Aligned_cols=83 Identities=23% Similarity=0.276 Sum_probs=74.0
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
.+++.||++.|.+. .+-..++-++.|..|+++.|.+. .+|..+++ ..+..+++..|.++ ..|.+++.++.++.+++
T Consensus 42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence 46889999999986 45667888899999999999998 89999998 88999999999998 89999999999999999
Q ss_pred cCCcCcc
Q 007860 503 NNNLLEG 509 (587)
Q Consensus 503 s~N~l~g 509 (587)
-+|.|..
T Consensus 119 k~~~~~~ 125 (326)
T KOG0473|consen 119 KKTEFFR 125 (326)
T ss_pred ccCcchH
Confidence 9999863
No 73
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.66 E-value=0.007 Score=59.51 Aligned_cols=84 Identities=23% Similarity=0.273 Sum_probs=49.2
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc--cccCCCCCCEEE
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD--SLTSSSKLQLVL 501 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~--~l~~l~~L~~L~ 501 (587)
.+..|++-+++|..+ .-..+|+.|+.|.||-|+++ .+- .+.. ++|++|+|..|.|. .+-+ .+.++++|+.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~-pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLA-PLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cch-hHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHh
Confidence 355566666666521 12346777777777777776 221 1233 66777777777665 3332 245666777777
Q ss_pred ccCCcCcccCch
Q 007860 502 LNNNLLEGRVPE 513 (587)
Q Consensus 502 Ls~N~l~g~ip~ 513 (587)
|..|.=.|.-+.
T Consensus 95 L~ENPCc~~ag~ 106 (388)
T KOG2123|consen 95 LDENPCCGEAGQ 106 (388)
T ss_pred hccCCcccccch
Confidence 777766665543
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=89.96 E-value=0.2 Score=27.57 Aligned_cols=7 Identities=71% Similarity=0.985 Sum_probs=2.5
Q ss_pred EEeccCC
Q 007860 475 RLDLSDN 481 (587)
Q Consensus 475 ~L~Ls~N 481 (587)
.|+|++|
T Consensus 5 ~L~l~~n 11 (17)
T PF13504_consen 5 TLDLSNN 11 (17)
T ss_dssp EEEETSS
T ss_pred EEECCCC
Confidence 3333333
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.95 E-value=0.22 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.8
Q ss_pred CCCCcEEEccCCCCCCCCCCCC
Q 007860 563 QKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 563 l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
+.+|+.|+|++|+|+.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4578889999999999887654
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.95 E-value=0.22 Score=30.51 Aligned_cols=22 Identities=18% Similarity=0.298 Sum_probs=17.8
Q ss_pred CCCCcEEEccCCCCCCCCCCCC
Q 007860 563 QKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 563 l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
+.+|+.|+|++|+|+.+|...+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 4578889999999999887654
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.67 E-value=0.41 Score=29.30 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCCCCEEEccCCcCcccCchhhh
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELY 516 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~ 516 (587)
+++|+.|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777776 5665544
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.67 E-value=0.41 Score=29.30 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=14.0
Q ss_pred CCCCCEEEccCCcCcccCchhhh
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELY 516 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~ 516 (587)
+++|+.|+|++|++. .+|...+
T Consensus 1 L~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCC-cCCHHHc
Confidence 356677777777776 5665544
No 79
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.72 E-value=0.051 Score=53.67 Aligned_cols=75 Identities=20% Similarity=0.237 Sum_probs=58.6
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC--CCCC-CCccEEeccCCcCCccCCcc-----ccCCC
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPDS-----LTSSS 495 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~-~~L~~L~Ls~N~l~g~iP~~-----l~~l~ 495 (587)
+.|++|.|+-|.|+.. ..+..+++|++|+|..|.|. .+.+ .+.. ++|+.|.|..|...|.-+.. +.-|+
T Consensus 41 p~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LP 117 (388)
T KOG2123|consen 41 PLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLP 117 (388)
T ss_pred ccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcc
Confidence 5689999999999843 33778999999999999998 3332 2445 89999999999998877753 44577
Q ss_pred CCCEEE
Q 007860 496 KLQLVL 501 (587)
Q Consensus 496 ~L~~L~ 501 (587)
+|++||
T Consensus 118 nLkKLD 123 (388)
T KOG2123|consen 118 NLKKLD 123 (388)
T ss_pred cchhcc
Confidence 888775
No 80
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=86.48 E-value=0.46 Score=29.25 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=16.8
Q ss_pred CCCcEEEccCCCCCCCCCCCC
Q 007860 564 KSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 564 ~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
.+|+.|++++|+|+.+|+...
T Consensus 2 ~~L~~L~vs~N~Lt~LPeL~~ 22 (26)
T smart00364 2 PSLKELNVSNNQLTSLPELXX 22 (26)
T ss_pred cccceeecCCCccccCccccc
Confidence 367889999999999998543
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.46 E-value=0.021 Score=54.93 Aligned_cols=84 Identities=23% Similarity=0.228 Sum_probs=68.4
Q ss_pred chhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc
Q 007860 441 SDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519 (587)
Q Consensus 441 p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~ 519 (587)
-.++......+.||++.|++. .+-..+.. ..|..|+++.|++. .+|..++.+..+..+++.+|+++ ..|.+++...
T Consensus 35 v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~ 111 (326)
T KOG0473|consen 35 VREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEP 111 (326)
T ss_pred hhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccC
Confidence 356788889999999999998 55566666 88999999999998 88999999999999999999998 7888888766
Q ss_pred cCCceeecc
Q 007860 520 VHGGAFDLS 528 (587)
Q Consensus 520 ~~L~~l~Ls 528 (587)
. ++.+++.
T Consensus 112 ~-~k~~e~k 119 (326)
T KOG0473|consen 112 H-PKKNEQK 119 (326)
T ss_pred C-cchhhhc
Confidence 3 4444333
No 82
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms]
Probab=84.86 E-value=0.58 Score=46.24 Aligned_cols=65 Identities=31% Similarity=0.566 Sum_probs=50.9
Q ss_pred hHHHHHhhhccccceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEEC-Cc-cccccceecccC
Q 007860 261 PMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN-DK-NVTRVDIFNSVG 327 (587)
Q Consensus 261 P~~Vy~Ta~~~~~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in-~~-~l~~~di~~~~~ 327 (587)
-...|||+|.-.-.+.|..+.+..++|.+.|-|||.. ....+..+|+|-+| +. .+..+|++...|
T Consensus 107 d~ily~ter~neetFgyd~pik~dgdyalvlkfaevy--F~~~q~kvfdvrln~sh~vVk~ldi~~~vg 173 (355)
T KOG3593|consen 107 DIILYQTERYNEETFGYDVPIKEDGDYALVLKFAEVY--FKTCQHKVFDVRLNCSHCVVKALDIFDQVG 173 (355)
T ss_pred hhhhhhhcccchhhhcccccccCCCceehhhhHHHHH--HHhhhhhheeeeeccceeEEeccchhhhcC
Confidence 3468999998544466777777788999999999976 34557899999999 55 678888887666
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=79.11 E-value=4.5 Score=35.03 Aligned_cols=87 Identities=14% Similarity=0.243 Sum_probs=49.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
.|+.+.+.. .+...-...|..+++|+.+.+.++ +. .++.... . .+|+.+.+.. .+...-...+..+++|+.+++
T Consensus 13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~ 88 (129)
T PF13306_consen 13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDI 88 (129)
T ss_dssp T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred CCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccccccccc
Confidence 467777774 566555567888889999999885 66 5555443 4 6899999976 444222345667889999998
Q ss_pred cCCcCcccCchhhhh
Q 007860 503 NNNLLEGRVPEELYS 517 (587)
Q Consensus 503 s~N~l~g~ip~~l~~ 517 (587)
..+ +. .++...+.
T Consensus 89 ~~~-~~-~i~~~~f~ 101 (129)
T PF13306_consen 89 PSN-IT-EIGSSSFS 101 (129)
T ss_dssp TTT--B-EEHTTTTT
T ss_pred Ccc-cc-EEchhhhc
Confidence 765 44 45444433
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=74.93 E-value=1.1 Score=26.81 Aligned_cols=14 Identities=29% Similarity=0.406 Sum_probs=6.4
Q ss_pred CCCCEEEccCCcCc
Q 007860 495 SKLQLVLLNNNLLE 508 (587)
Q Consensus 495 ~~L~~L~Ls~N~l~ 508 (587)
++|+.|+|++|+|+
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 34555555555554
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=74.39 E-value=0.065 Score=58.38 Aligned_cols=82 Identities=24% Similarity=0.242 Sum_probs=37.6
Q ss_pred EEEEEcCCCCCcccCc----hhhcCCCCCCEEEccCCCCCCCCCCC----CCC--CCccEEeccCCcCCcc----CCccc
Q 007860 426 ISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSG----LGQ--QSLVRLDLSDNQFTGS----IPDSL 491 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~----~~~--~~L~~L~Ls~N~l~g~----iP~~l 491 (587)
+..|.|.+|.+..... ..+..+..|+.|+++.|.+.+.--.. +.. ..|+.|++..+.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 3445555555543222 23344555666666666655221111 111 2344455555554422 33334
Q ss_pred cCCCCCCEEEccCCcC
Q 007860 492 TSSSKLQLVLLNNNLL 507 (587)
Q Consensus 492 ~~l~~L~~L~Ls~N~l 507 (587)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4445555556665555
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.46 E-value=3.4 Score=25.50 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=9.3
Q ss_pred CCCcEEEccCCCCCCC
Q 007860 564 KSLMLLEMESQHAKGL 579 (587)
Q Consensus 564 ~~L~~L~Ls~N~l~~~ 579 (587)
.+|+.|+|++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666666544
No 87
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.33 E-value=0.8 Score=43.43 Aligned_cols=80 Identities=21% Similarity=0.174 Sum_probs=55.3
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCC-CCCCCCC--CCccEEeccCC-cCCccCCccccCCCCCCEE
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ--QSLVRLDLSDN-QFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~--~~L~~L~Ls~N-~l~g~iP~~l~~l~~L~~L 500 (587)
.++.++-++..|..+=-+.+.+++.|+.|.+.++.--+. --+.++. ++|+.|++++| +|+..==..+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 488899999998876667788889999998888763321 1122333 78999999977 4552222346677778777
Q ss_pred EccC
Q 007860 501 LLNN 504 (587)
Q Consensus 501 ~Ls~ 504 (587)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 7765
No 88
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=62.82 E-value=0.16 Score=55.34 Aligned_cols=84 Identities=29% Similarity=0.307 Sum_probs=42.3
Q ss_pred eEEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCCCCCC--------CCCCCCCC-CCccEEeccCCcCCcc----C
Q 007860 425 VISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGG--------TLPSGLGQ-QSLVRLDLSDNQFTGS----I 487 (587)
Q Consensus 425 ~l~~L~L~~n~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g--------~ip~~~~~-~~L~~L~Ls~N~l~g~----i 487 (587)
.++.|.+..+.+++ .+.+.+.....++.++++.|.+.- .++..+.. .++++|.++++.++-. +
T Consensus 145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l 224 (478)
T KOG4308|consen 145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL 224 (478)
T ss_pred HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence 34555666665542 344455556667777777776631 01111223 5566666666665511 0
Q ss_pred CccccCCCC-CCEEEccCCcCc
Q 007860 488 PDSLTSSSK-LQLVLLNNNLLE 508 (587)
Q Consensus 488 P~~l~~l~~-L~~L~Ls~N~l~ 508 (587)
-..+...++ +..|++..|++.
T Consensus 225 ~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 225 DEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHHHhccchhhHHHHHHhcCcc
Confidence 011233333 455666666665
No 89
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=61.75 E-value=13 Score=31.98 Aligned_cols=87 Identities=14% Similarity=0.255 Sum_probs=46.9
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.++.+.+..+ +...-...+.++++|+.+.+.+ .+...-...+.. ++|+.+++..+ +.-.-...+.++ +|+.+.+.
T Consensus 36 ~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 36 SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence 4677888775 6645556788888899999976 444222334555 89999999776 552333456666 88988887
Q ss_pred CCcCcccCchhhhh
Q 007860 504 NNLLEGRVPEELYS 517 (587)
Q Consensus 504 ~N~l~g~ip~~l~~ 517 (587)
. .+. .++...+.
T Consensus 112 ~-~~~-~i~~~~F~ 123 (129)
T PF13306_consen 112 S-NIT-KIEENAFK 123 (129)
T ss_dssp T-B-S-S----GGG
T ss_pred C-Ccc-EECCcccc
Confidence 6 444 35544443
No 90
>KOG2230 consensus Predicted beta-mannosidase [Carbohydrate transport and metabolism]
Probab=57.21 E-value=2e+02 Score=31.89 Aligned_cols=117 Identities=16% Similarity=0.233 Sum_probs=65.5
Q ss_pred eeccccccCCCCCCCCchHHHHHhhhcc-----ccceEEEEecCCCCcEEEEEEeeecccCCCCC-----ceeEEEEEEC
Q 007860 244 VTTRERITNTNQPPNYYPMKLYQTAIVS-----SGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKA-----GQRVFDILVN 313 (587)
Q Consensus 244 ~~t~~~i~~~~~~~~~~P~~Vy~Ta~~~-----~~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~-----~~r~F~V~in 313 (587)
-+...+++++...|-..-+++|++...- .+-|.+.|-...+.+|--.+..-|+...+... -+-+-.|++|
T Consensus 32 ~~~n~t~~~~g~vpg~i~s~l~~~gii~~~~~~~n~ln~kwia~d~wtysr~frl~dl~~~~~~~l~ie~vdtia~v~~n 111 (867)
T KOG2230|consen 32 SSSNKTVNGTGTVPGDIYSDLYASGIIDNPLFGENHLNLKWIAEDDWTYSRKFRLIDLDDTVGAFLEIESVDTIATVYVN 111 (867)
T ss_pred ecCCCceecCCCCCchHhHHHHhcccccCccccccccceeEEeccCccceeeeEEEEccccccceEEEeecceeEEEEEc
Confidence 3445667777666666677888888765 23466666544456666544445554432211 1344588999
Q ss_pred Cccc-cccceecccCCcceeeeeeeEeecCCccEEEEEcccchhhhhhcccccc
Q 007860 314 DKNV-TRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366 (587)
Q Consensus 314 ~~~l-~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~ 366 (587)
|+.+ ..- ..+.++..+.+......|.+++.+..+..-+...+-|..+
T Consensus 112 ~~~v~~s~------n~f~~y~~~vt~ii~~~n~i~~~f~ssv~yA~~~~~~~~k 159 (867)
T KOG2230|consen 112 GQKVLHSR------NQFLPYHVNVTDIIAGENDITIKFKSSVKYAEKRADEYKK 159 (867)
T ss_pred cEEEeecc------ccceeEEEeEEEEecCCcceEEEeehhHHHHHHHHHhhhc
Confidence 9854 211 1245555566666666678877766544323233334433
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=52.14 E-value=7.6 Score=42.34 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=17.4
Q ss_pred eeEEEEEcCCCCCccc--CchhhcCCCCCCEEEccCC
Q 007860 424 VVISQIDLGSQGLKGY--ISDKISLLSNLVNLNLSTN 458 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~--~p~~l~~l~~L~~L~Ls~N 458 (587)
+.+..++|++|++... +..--...++|+.|+|++|
T Consensus 218 p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 218 PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred cceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3466677777766411 1111223355556666665
No 92
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=48.32 E-value=15 Score=22.89 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=6.4
Q ss_pred CCCEEEccCCCCC
Q 007860 449 NLVNLNLSTNSLG 461 (587)
Q Consensus 449 ~L~~L~Ls~N~l~ 461 (587)
+|+.|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 3455555555543
No 93
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=32.46 E-value=26 Score=23.48 Aligned_cols=13 Identities=31% Similarity=0.225 Sum_probs=7.8
Q ss_pred CCCCCchhHHHHH
Q 007860 1 MSLLSPSSFFFLS 13 (587)
Q Consensus 1 ~~~~~~~~~~~~~ 13 (587)
||++|.+.+++|+
T Consensus 1 Mk~l~~a~~l~lL 13 (36)
T PF08194_consen 1 MKCLSLAFALLLL 13 (36)
T ss_pred CceeHHHHHHHHH
Confidence 8888774444433
No 94
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=27.36 E-value=23 Score=38.24 Aligned_cols=86 Identities=20% Similarity=0.122 Sum_probs=49.1
Q ss_pred ceeEEEEEcCCC-CCcccC----chhhcCCCCCCEEEccCCC-CCCCCCCCCCC--CCccEEeccCCc-CCcc-CCcccc
Q 007860 423 AVVISQIDLGSQ-GLKGYI----SDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ--QSLVRLDLSDNQ-FTGS-IPDSLT 492 (587)
Q Consensus 423 ~~~l~~L~L~~n-~l~g~~----p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~--~~L~~L~Ls~N~-l~g~-iP~~l~ 492 (587)
.+.|+.|+++++ ...... ......+.+|+.|+++... ++...-..+.. ++|+.|.+.++. ++.. +-....
T Consensus 213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~ 292 (482)
T KOG1947|consen 213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE 292 (482)
T ss_pred CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence 356888888762 111111 1234556788888888877 44332233333 678888866655 4311 111223
Q ss_pred CCCCCCEEEccCCcCc
Q 007860 493 SSSKLQLVLLNNNLLE 508 (587)
Q Consensus 493 ~l~~L~~L~Ls~N~l~ 508 (587)
.+++|++|+++.+...
T Consensus 293 ~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 293 RCPSLRELDLSGCHGL 308 (482)
T ss_pred hcCcccEEeeecCccc
Confidence 5677888888876553
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=27.18 E-value=33 Score=37.67 Aligned_cols=63 Identities=32% Similarity=0.385 Sum_probs=43.0
Q ss_pred CCCCCCEEEccCCCCCCCCCC--CCCC--CCccEEeccCC--cCCccCCccccCC--CCCCEEEccCCcCcccC
Q 007860 446 LLSNLVNLNLSTNSLGGTLPS--GLGQ--QSLVRLDLSDN--QFTGSIPDSLTSS--SKLQLVLLNNNLLEGRV 511 (587)
Q Consensus 446 ~l~~L~~L~Ls~N~l~g~ip~--~~~~--~~L~~L~Ls~N--~l~g~iP~~l~~l--~~L~~L~Ls~N~l~g~i 511 (587)
+.+.+..+.|++|+|- .+.. .+.. ++|..|+|++| .+. . -.++.++ ..|+.|.|.+|++....
T Consensus 216 n~p~i~sl~lsnNrL~-~Ld~~sslsq~apklk~L~LS~N~~~~~-~-~~el~K~k~l~Leel~l~GNPlc~tf 286 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLY-HLDALSSLSQIAPKLKTLDLSHNHSKIS-S-ESELDKLKGLPLEELVLEGNPLCTTF 286 (585)
T ss_pred CCcceeeeecccchhh-chhhhhHHHHhcchhheeecccchhhhc-c-hhhhhhhcCCCHHHeeecCCccccch
Confidence 4567788899999986 3322 2344 89999999999 433 1 2233333 45789999999997544
No 96
>PF14299 PP2: Phloem protein 2
Probab=25.93 E-value=4e+02 Score=24.12 Aligned_cols=98 Identities=17% Similarity=0.268 Sum_probs=51.7
Q ss_pred CceeeeeCCCCCCCcceEeecCCCceEEEEEEeecC-CCCCCCC-CCceEEEECCEEE-Ee---------cCCCCccccC
Q 007860 76 EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYD-NYDGKSH-SPSFDVSVEGTLV-FS---------WRSPWPEGLA 143 (587)
Q Consensus 76 y~t~R~f~~~~~~~~~Y~~pv~~~~~ylvRl~F~~~-n~~~~~~-~~~F~v~~~~~~~-l~---------~~~~~~~~~~ 143 (587)
...+.++-- .|+-+|-.| .++++|-|=+-|... +..|... +..|.|.+++..- .. ..|.|.+.
T Consensus 39 L~~V~WLeI-~G~i~~~~L--sp~t~Y~vy~v~kl~~~~~Gw~~~pv~~~v~~~~~~~~~~~~~~~~~~~r~dgW~Ei-- 113 (154)
T PF14299_consen 39 LLQVCWLEI-RGKINTRML--SPGTTYAVYFVFKLKDDAYGWDSPPVEFSVKVPDGEKYEQERKVCLPKERGDGWMEI-- 113 (154)
T ss_pred EEEEEEEEE-EEEEEceEc--CCCCEEEEEEEEEecCCCCCCCcCCEEEEEEeCCCccccceeeEEcCCCCCCCEEEE--
Confidence 456666654 232222222 356789776666322 2233333 5568888864321 00 11223221
Q ss_pred CCceEEEEEEEe-cCCeeEEEEeeCCCC----CceeeeEEeEe
Q 007860 144 RDGAYSDLFAFV-KDGELDLCFYSFATD----PPVIASLEVQQ 181 (587)
Q Consensus 144 ~~~~~~e~i~~~-~~~~l~i~~~~~~~~----~pfIn~iEi~~ 181 (587)
-+-||.+.. .++.+.+++.....+ -=.|-||||||
T Consensus 114 ---e~GeF~~~~~~~~ev~f~~~E~~~~~wK~GLiv~GieIRP 153 (154)
T PF14299_consen 114 ---ELGEFFNEGGDDGEVEFSMYEVDSGHWKGGLIVEGIEIRP 153 (154)
T ss_pred ---EcceEEecCCCCcEEEEEEEEecCCcccCeEEEEEEEEec
Confidence 223665433 456788888876533 24899999997
No 97
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=25.59 E-value=53 Score=27.36 Aligned_cols=19 Identities=26% Similarity=0.163 Sum_probs=8.5
Q ss_pred CchhHHHHHHHHHhhhhhh
Q 007860 5 SPSSFFFLSLLLVLPLSLA 23 (587)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~ 23 (587)
|-+.+||.|++++|+++++
T Consensus 3 SK~~llL~l~LA~lLlisS 21 (95)
T PF07172_consen 3 SKAFLLLGLLLAALLLISS 21 (95)
T ss_pred hhHHHHHHHHHHHHHHHHh
Confidence 4454444444444444433
No 98
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM6 from CAZY which was previously known as cellulose-binding domain family VI (CBD VI). CBM6 bind to amorphous cellulose, xylan, mixed beta-(1,3)(1,4)glucan and beta-1,3-glucan[, , ]. CBM6 adopts a classic lectin-like beta-jelly roll fold, predominantly consisting of five antiparallel beta-strands on one face and four antiparallel beta-strands on the other face. It contains two potential ligand binding sites, named respectively cleft A and B. These clefts include aromatic residues which are probably involved in the substrate binding. The cleft B is located on the concave surface of one beta-sheet, and the cleft A on one edge of the protein between the loop that connects the inner and outer beta-sheets of the jellyroll fold []. The multiple binding clefts confer the extensive range of specificities displayed by the domain [, , ].; GO: 0030246 carbohydrate binding; PDB: 1UY1_A 1UY3_A 1UY4_A 1UY2_A 1UYY_A 1UXZ_B 1UYZ_A 1UY0_B 1UYX_A 1UZ0_A ....
Probab=22.44 E-value=4.8e+02 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=27.7
Q ss_pred CCCCcceE-eecCCCceEEEEEEeecCCCCCCCCCCceEEEECC
Q 007860 86 SGKKNCYI-IPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEG 128 (587)
Q Consensus 86 ~~~~~~Y~-~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~ 128 (587)
.|...+|+ +.+..+|.|-|++...-+ .+ ...++|++++
T Consensus 30 ~G~~~~~~~Vd~~~~g~y~~~~~~a~~--~~---~~~~~l~id~ 68 (125)
T PF03422_consen 30 NGDWIEYNNVDVPEAGTYTLTIRYANG--GG---GGTIELRIDG 68 (125)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEEEEES--SS---SEEEEEEETT
T ss_pred CCCEEEEEEEeeCCCceEEEEEEEECC--CC---CcEEEEEECC
Confidence 35556888 888888999999666433 21 2589999998
No 99
>PF15240 Pro-rich: Proline-rich
Probab=21.99 E-value=62 Score=30.19 Aligned_cols=21 Identities=10% Similarity=0.042 Sum_probs=11.9
Q ss_pred HHHHHHHHhhhhhhccCCCCC
Q 007860 10 FFLSLLLVLPLSLASSYPYKA 30 (587)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~ 30 (587)
|++||+|+|++.++|..+..|
T Consensus 2 LlVLLSvALLALSSAQ~~dEd 22 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQSTDED 22 (179)
T ss_pred hhHHHHHHHHHhhhccccccc
Confidence 455566666666666555444
No 100
>PRK06764 hypothetical protein; Provisional
Probab=20.27 E-value=88 Score=25.16 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.5
Q ss_pred CcceEeecCCCceEEEEEEe
Q 007860 89 KNCYIIPNLPPGRYYIRTFT 108 (587)
Q Consensus 89 ~~~Y~~pv~~~~~ylvRl~F 108 (587)
.+.|++.-.++|+|.||..=
T Consensus 73 lnkyti~f~kpg~yvirvng 92 (105)
T PRK06764 73 LNKYTIRFSKPGKYVIRVNG 92 (105)
T ss_pred eeeeEEEecCCccEEEEEcc
Confidence 35899988899999999753
Done!