Query 007860
Match_columns 587
No_of_seqs 425 out of 3399
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 12:17:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007860.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007860hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jwp_A Malectin, MGC80075; sug 99.9 2.7E-25 9.2E-30 207.7 11.7 148 30-183 6-172 (174)
2 1ogq_A PGIP-2, polygalacturona 99.9 2E-22 6.7E-27 206.7 14.9 198 374-578 3-235 (313)
3 2jwp_A Malectin, MGC80075; sug 99.9 5.4E-22 1.9E-26 185.2 7.3 153 199-367 5-171 (174)
4 4ecn_A Leucine-rich repeat pro 99.8 2.3E-20 7.7E-25 215.0 15.6 197 374-581 266-612 (876)
5 3rgz_A Protein brassinosteroid 99.8 3E-20 1E-24 213.4 9.8 164 335-517 395-560 (768)
6 4eco_A Uncharacterized protein 99.8 3E-19 1E-23 200.6 12.8 196 374-582 27-371 (636)
7 1ogq_A PGIP-2, polygalacturona 99.8 6.5E-20 2.2E-24 187.9 5.2 154 425-580 126-308 (313)
8 4fcg_A Uncharacterized protein 99.8 4.9E-19 1.7E-23 182.6 10.2 200 373-577 23-290 (328)
9 3rgz_A Protein brassinosteroid 99.8 2.1E-18 7.1E-23 198.0 15.8 194 374-579 9-262 (768)
10 4eco_A Uncharacterized protein 99.7 1.1E-18 3.7E-23 196.1 5.5 217 343-582 192-475 (636)
11 1ozn_A Reticulon 4 receptor; N 99.7 4E-17 1.4E-21 164.5 16.0 179 402-581 2-218 (285)
12 3zyi_A Leucine-rich repeat-con 99.7 5.4E-17 1.8E-21 174.7 16.9 184 400-584 44-286 (452)
13 2o6s_A Variable lymphocyte rec 99.7 3E-17 1E-21 157.4 10.3 165 402-578 1-179 (208)
14 3zyj_A Leucine-rich repeat-con 99.7 1E-16 3.5E-21 171.9 14.9 184 400-584 33-275 (440)
15 2z66_A Variable lymphocyte rec 99.7 3.4E-17 1.2E-21 166.7 9.7 178 402-581 1-240 (306)
16 1xku_A Decorin; proteoglycan, 99.7 3.1E-16 1.1E-20 161.4 17.0 180 400-582 23-258 (330)
17 4fcg_A Uncharacterized protein 99.7 6E-18 2.1E-22 174.4 3.6 238 306-583 82-320 (328)
18 2o6q_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 156.4 16.0 178 396-577 6-218 (270)
19 2z62_A TOLL-like receptor 4, v 99.7 2.2E-16 7.4E-21 158.3 14.5 157 425-582 29-218 (276)
20 3v47_A TOLL-like receptor 5B a 99.7 1.3E-16 4.6E-21 171.3 13.5 128 400-528 2-137 (455)
21 2v70_A SLIT-2, SLIT homolog 2 99.7 2E-16 7E-21 153.4 12.9 157 401-578 4-167 (220)
22 3m19_A Variable lymphocyte rec 99.7 2.9E-16 1E-20 155.3 14.1 158 410-579 16-194 (251)
23 3e6j_A Variable lymphocyte rec 99.7 5.5E-16 1.9E-20 151.3 15.6 150 408-579 19-174 (229)
24 2v9t_B SLIT homolog 2 protein 99.7 3.3E-16 1.1E-20 151.9 13.8 156 401-577 4-165 (220)
25 2o6q_A Variable lymphocyte rec 99.7 4.5E-16 1.5E-20 155.6 15.2 169 407-584 4-201 (270)
26 3v47_A TOLL-like receptor 5B a 99.7 1.2E-16 4.1E-21 171.7 11.1 117 335-468 55-174 (455)
27 4ecn_A Leucine-rich repeat pro 99.7 6.7E-17 2.3E-21 186.1 9.7 228 334-573 491-785 (876)
28 2ft3_A Biglycan; proteoglycan, 99.7 3.7E-16 1.3E-20 161.0 13.6 177 400-581 25-258 (332)
29 2id5_A Lingo-1, leucine rich r 99.7 1.4E-16 4.6E-21 172.5 9.9 157 425-582 129-314 (477)
30 2id5_A Lingo-1, leucine rich r 99.7 5.4E-16 1.9E-20 167.8 14.4 127 401-528 2-136 (477)
31 3zyj_A Leucine-rich repeat-con 99.6 1.3E-15 4.3E-20 163.4 16.4 153 423-578 111-293 (440)
32 1wwl_A Monocyte differentiatio 99.6 1.8E-16 6E-21 162.1 8.9 85 423-508 120-214 (312)
33 3t6q_A CD180 antigen; protein- 99.6 4.6E-16 1.6E-20 173.4 12.6 190 335-528 279-484 (606)
34 2z80_A TOLL-like receptor 2, v 99.6 2.6E-16 8.9E-21 163.6 9.7 171 408-582 30-240 (353)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 2.9E-16 1E-20 173.6 10.7 128 445-582 350-491 (562)
36 2z7x_B TOLL-like receptor 1, v 99.6 2.5E-16 8.6E-21 172.3 9.8 111 471-582 324-462 (520)
37 1ozn_A Reticulon 4 receptor; N 99.6 1.7E-15 5.8E-20 152.5 14.9 151 426-578 58-239 (285)
38 2xwt_C Thyrotropin receptor; s 99.6 6.6E-16 2.3E-20 151.4 11.5 178 402-583 4-224 (239)
39 2z81_A CD282 antigen, TOLL-lik 99.6 4.2E-16 1.4E-20 171.5 10.7 171 408-580 4-212 (549)
40 2xot_A Amphoterin-induced prot 99.6 1.7E-15 5.9E-20 158.1 14.5 166 397-580 7-179 (361)
41 1wwl_A Monocyte differentiatio 99.6 3.7E-16 1.3E-20 159.7 8.8 155 425-581 96-291 (312)
42 4glp_A Monocyte differentiatio 99.6 5.6E-16 1.9E-20 158.2 10.0 153 423-577 116-307 (310)
43 1p9a_G Platelet glycoprotein I 99.6 3.3E-15 1.1E-19 151.2 15.1 147 424-584 31-192 (290)
44 1w8a_A SLIT protein; signaling 99.6 1.4E-15 4.8E-20 144.2 10.9 135 402-547 2-143 (192)
45 2z7x_B TOLL-like receptor 1, v 99.6 3.9E-16 1.3E-20 170.7 8.0 90 492-582 321-439 (520)
46 2z81_A CD282 antigen, TOLL-lik 99.6 1.5E-15 5.1E-20 167.1 12.4 109 471-581 334-468 (549)
47 2z62_A TOLL-like receptor 4, v 99.6 4.6E-15 1.6E-19 148.6 14.0 150 424-580 76-240 (276)
48 3m19_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 146.6 13.0 154 408-583 5-174 (251)
49 3a79_B TLR6, VLRB.59, TOLL-lik 99.6 8.7E-16 3E-20 169.8 8.4 92 492-584 350-470 (562)
50 4ay9_X Follicle-stimulating ho 99.6 2.6E-15 8.7E-20 156.1 11.3 180 402-584 2-222 (350)
51 1xku_A Decorin; proteoglycan, 99.6 1.1E-14 3.9E-19 149.6 15.0 155 423-584 99-283 (330)
52 3t6q_A CD180 antigen; protein- 99.6 9.1E-15 3.1E-19 162.9 15.1 118 410-528 14-137 (606)
53 2ft3_A Biglycan; proteoglycan, 99.6 8.8E-15 3E-19 150.7 13.9 155 425-584 79-284 (332)
54 3o6n_A APL1; leucine-rich repe 99.6 1.4E-14 4.7E-19 152.6 14.7 156 421-581 90-265 (390)
55 3o6n_A APL1; leucine-rich repe 99.6 1.9E-14 6.6E-19 151.4 15.8 133 335-486 46-180 (390)
56 2z66_A Variable lymphocyte rec 99.6 4.1E-15 1.4E-19 151.2 10.1 156 423-580 77-264 (306)
57 3oja_B Anopheles plasmodium-re 99.6 1.7E-14 5.7E-19 160.8 14.9 156 421-581 96-271 (597)
58 3oja_B Anopheles plasmodium-re 99.6 2.1E-14 7.1E-19 160.0 15.7 151 335-507 52-204 (597)
59 3j0a_A TOLL-like receptor 5; m 99.6 4.2E-15 1.4E-19 172.3 10.1 68 425-492 124-195 (844)
60 1ziw_A TOLL-like receptor 3; i 99.6 1.3E-14 4.4E-19 164.0 13.4 84 425-508 26-110 (680)
61 3zyi_A Leucine-rich repeat-con 99.6 2.1E-14 7.1E-19 154.4 14.4 212 335-578 76-304 (452)
62 1ziw_A TOLL-like receptor 3; i 99.6 1.1E-14 3.8E-19 164.5 12.8 227 335-581 26-289 (680)
63 3rfs_A Internalin B, repeat mo 99.6 3.1E-14 1.1E-18 142.4 14.7 83 425-509 64-147 (272)
64 2z80_A TOLL-like receptor 2, v 99.5 6.8E-15 2.3E-19 152.9 9.5 160 422-583 98-296 (353)
65 1jl5_A Outer protein YOPM; leu 99.5 5E-15 1.7E-19 159.5 8.4 144 425-582 112-275 (454)
66 4glp_A Monocyte differentiatio 99.5 7.3E-15 2.5E-19 149.9 8.3 156 426-582 93-290 (310)
67 3bz5_A Internalin-J, INLJ; leu 99.5 1.9E-14 6.6E-19 154.9 12.1 124 422-558 168-296 (457)
68 3vq2_A TLR4, TOLL-like recepto 99.5 2.4E-14 8.3E-19 159.4 12.9 153 424-577 32-217 (606)
69 3vq2_A TLR4, TOLL-like recepto 99.5 1.6E-14 5.4E-19 160.9 11.2 145 425-581 377-538 (606)
70 1h6u_A Internalin H; cell adhe 99.5 3.1E-14 1E-18 145.2 12.0 150 424-582 63-235 (308)
71 3o53_A Protein LRIM1, AGAP0063 99.5 1.3E-14 4.4E-19 148.6 8.7 103 423-528 57-177 (317)
72 1jl5_A Outer protein YOPM; leu 99.5 2.5E-14 8.6E-19 153.9 11.4 142 425-581 196-354 (454)
73 3oja_A Leucine-rich immune mol 99.5 2.3E-14 7.8E-19 155.7 10.8 147 423-581 57-231 (487)
74 3rfs_A Internalin B, repeat mo 99.5 1.5E-14 5E-19 144.8 8.3 143 424-577 85-235 (272)
75 4ezg_A Putative uncharacterize 99.5 3.3E-14 1.1E-18 135.1 10.4 139 424-578 44-195 (197)
76 2o6r_A Variable lymphocyte rec 99.5 6E-14 2E-18 130.8 11.8 135 402-547 1-141 (177)
77 3cvr_A Invasion plasmid antige 99.5 3E-14 1E-18 156.9 11.1 150 409-581 49-224 (571)
78 2wfh_A SLIT homolog 2 protein 99.5 1E-13 3.6E-18 131.4 12.9 133 400-544 2-140 (193)
79 1h6u_A Internalin H; cell adhe 99.5 9.9E-14 3.4E-18 141.5 13.5 151 423-582 40-213 (308)
80 3j0a_A TOLL-like receptor 5; m 99.5 5.8E-14 2E-18 162.7 13.1 154 424-578 24-218 (844)
81 4g8a_A TOLL-like receptor 4; l 99.5 6.2E-14 2.1E-18 156.3 12.9 160 412-583 35-220 (635)
82 2ell_A Acidic leucine-rich nuc 99.5 3.6E-14 1.2E-18 131.1 8.6 139 424-583 24-166 (168)
83 1h6t_A Internalin B; cell adhe 99.5 1E-13 3.4E-18 140.3 11.5 140 424-582 68-218 (291)
84 1p9a_G Platelet glycoprotein I 99.5 2.3E-13 8E-18 137.5 13.4 130 425-577 78-208 (290)
85 4fmz_A Internalin; leucine ric 99.5 7E-14 2.4E-18 144.5 9.2 138 425-581 178-328 (347)
86 1w8a_A SLIT protein; signaling 99.5 3.1E-13 1.1E-17 127.9 12.6 128 427-578 11-140 (192)
87 3goz_A Leucine-rich repeat-con 99.4 4.7E-14 1.6E-18 147.1 6.3 50 531-580 168-241 (362)
88 4fmz_A Internalin; leucine ric 99.4 8.7E-14 3E-18 143.8 8.3 136 423-577 198-346 (347)
89 1m9s_A Internalin B; cell inva 99.4 2E-13 6.8E-18 151.8 11.6 143 422-583 63-216 (605)
90 3e6j_A Variable lymphocyte rec 99.4 1.2E-12 4E-17 127.6 15.0 132 427-583 22-154 (229)
91 2v9t_B SLIT homolog 2 protein 99.4 1.2E-12 4E-17 126.8 14.4 134 427-584 14-148 (220)
92 3bz5_A Internalin-J, INLJ; leu 99.4 1.1E-12 3.7E-17 141.2 14.7 145 422-580 62-228 (457)
93 2o6s_A Variable lymphocyte rec 99.4 2.1E-13 7.2E-18 130.5 7.7 125 424-561 52-178 (208)
94 2xwt_C Thyrotropin receptor; s 99.4 3.8E-13 1.3E-17 131.6 9.5 137 425-575 81-237 (239)
95 2z63_A TOLL-like receptor 4, v 99.4 1.2E-12 4.2E-17 144.2 14.6 98 422-519 74-173 (570)
96 3cvr_A Invasion plasmid antige 99.4 7.9E-13 2.7E-17 145.6 12.8 137 425-578 81-244 (571)
97 1xeu_A Internalin C; cellular 99.4 2.5E-13 8.7E-18 135.2 7.9 139 423-581 40-189 (263)
98 2v70_A SLIT-2, SLIT homolog 2 99.4 2.2E-12 7.6E-17 124.8 14.1 133 427-583 14-148 (220)
99 4b8c_D Glucose-repressible alc 99.4 1.1E-13 3.7E-18 157.4 5.6 130 424-558 224-369 (727)
100 2z63_A TOLL-like receptor 4, v 99.4 1E-12 3.5E-17 144.9 12.9 148 424-583 28-196 (570)
101 2je0_A Acidic leucine-rich nuc 99.4 3.9E-13 1.3E-17 121.4 7.6 129 424-573 17-149 (149)
102 3o53_A Protein LRIM1, AGAP0063 99.4 2.1E-13 7.1E-18 139.5 6.3 149 423-582 33-209 (317)
103 1o6v_A Internalin A; bacterial 99.4 1.7E-12 5.8E-17 140.0 13.0 152 423-583 220-394 (466)
104 2wfh_A SLIT homolog 2 protein 99.4 2.9E-12 1E-16 121.3 12.3 126 427-577 13-139 (193)
105 3oja_A Leucine-rich immune mol 99.4 3.6E-13 1.2E-17 146.2 6.8 190 335-577 59-250 (487)
106 3g06_A SSPH2 (leucine-rich rep 99.4 3.6E-12 1.2E-16 142.0 14.6 87 425-528 62-149 (622)
107 1o6v_A Internalin A; bacterial 99.4 2.7E-12 9.2E-17 138.4 12.5 129 425-562 244-389 (466)
108 2o6r_A Variable lymphocyte rec 99.3 1E-11 3.6E-16 115.5 14.4 130 426-580 9-140 (177)
109 4b8c_D Glucose-repressible alc 99.3 5.3E-13 1.8E-17 151.8 6.4 145 426-574 193-369 (727)
110 3g06_A SSPH2 (leucine-rich rep 99.3 6.9E-12 2.4E-16 139.7 14.4 78 423-513 80-158 (622)
111 4g8a_A TOLL-like receptor 4; l 99.3 3.9E-12 1.3E-16 141.6 12.5 139 429-582 36-191 (635)
112 3g39_A Variable lymphocyte rec 99.3 4.4E-12 1.5E-16 117.6 10.6 107 402-508 3-115 (170)
113 3goz_A Leucine-rich repeat-con 99.3 9.1E-13 3.1E-17 137.4 6.3 148 425-578 23-210 (362)
114 2xot_A Amphoterin-induced prot 99.3 3E-12 1E-16 133.4 10.1 128 424-560 64-201 (361)
115 2ca6_A RAN GTPase-activating p 99.3 5.6E-13 1.9E-17 140.1 3.8 155 423-578 59-288 (386)
116 2ast_B S-phase kinase-associat 99.3 1.1E-12 3.9E-17 134.6 5.4 151 424-574 93-282 (336)
117 4ezg_A Putative uncharacterize 99.3 4.8E-12 1.6E-16 120.1 8.4 126 423-562 65-195 (197)
118 1h6t_A Internalin B; cell adhe 99.3 1.5E-11 5.3E-16 124.1 12.1 142 423-583 45-197 (291)
119 1dce_A Protein (RAB geranylger 99.3 7.3E-12 2.5E-16 138.2 10.2 123 426-571 443-567 (567)
120 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 113.3 11.9 101 428-543 16-118 (174)
121 2ca6_A RAN GTPase-activating p 99.3 1.1E-12 3.7E-17 137.9 2.9 157 423-580 93-319 (386)
122 1a9n_A U2A', U2A'; complex (nu 99.2 1E-11 3.5E-16 115.5 7.9 130 424-576 19-152 (176)
123 1m9s_A Internalin B; cell inva 99.2 9.9E-12 3.4E-16 138.1 9.3 142 423-583 42-194 (605)
124 2je0_A Acidic leucine-rich nuc 99.2 2.8E-11 9.4E-16 109.2 10.2 113 446-581 15-130 (149)
125 3g39_A Variable lymphocyte rec 99.2 3.3E-11 1.1E-15 111.6 10.7 104 426-544 11-116 (170)
126 2ell_A Acidic leucine-rich nuc 99.2 4.5E-11 1.5E-15 110.1 11.0 115 445-581 21-137 (168)
127 2r9u_A Variable lymphocyte rec 99.2 5.2E-11 1.8E-15 110.7 11.4 116 400-516 4-125 (174)
128 2ast_B S-phase kinase-associat 99.2 3.8E-12 1.3E-16 130.7 3.8 150 424-575 70-258 (336)
129 1xeu_A Internalin C; cellular 99.2 6.6E-11 2.2E-15 117.7 11.1 121 422-561 61-185 (263)
130 2ifg_A High affinity nerve gro 99.2 6.6E-11 2.3E-15 122.2 10.3 97 402-516 1-100 (347)
131 1z7x_W Ribonuclease inhibitor; 99.1 9.2E-12 3.2E-16 133.5 2.2 154 425-578 200-412 (461)
132 1ds9_A Outer arm dynein; leuci 99.1 8.2E-13 2.8E-17 125.5 -6.1 63 443-508 43-106 (198)
133 1z7x_W Ribonuclease inhibitor; 99.1 1.2E-11 4.2E-16 132.5 1.2 84 425-508 114-212 (461)
134 1dce_A Protein (RAB geranylger 99.1 2.3E-10 8E-15 126.2 11.0 126 426-583 425-552 (567)
135 4ay9_X Follicle-stimulating ho 99.1 5.1E-10 1.7E-14 115.9 11.4 143 428-583 84-243 (350)
136 1a9n_A U2A', U2A'; complex (nu 99.0 4.6E-10 1.6E-14 104.2 9.5 114 443-581 14-130 (176)
137 1ds9_A Outer arm dynein; leuci 98.9 3.8E-11 1.3E-15 113.9 -2.3 121 444-579 14-155 (198)
138 3un9_A NLR family member X1; l 98.9 1.8E-10 6E-15 120.5 -1.6 84 425-508 102-196 (372)
139 2ifg_A High affinity nerve gro 98.8 3.9E-09 1.3E-13 108.8 8.2 96 412-509 20-117 (347)
140 3ogk_B Coronatine-insensitive 98.5 1.1E-07 3.7E-12 105.1 7.6 155 425-581 221-424 (592)
141 3ogk_B Coronatine-insensitive 98.5 8.3E-09 2.8E-13 114.1 -1.4 108 471-579 378-528 (592)
142 3un9_A NLR family member X1; l 98.4 2.1E-08 7.2E-13 104.7 -0.2 145 426-577 74-252 (372)
143 3sb4_A Hypothetical leucine ri 98.4 2.8E-07 9.7E-12 94.2 7.9 85 494-584 225-317 (329)
144 2p1m_B Transport inhibitor res 98.2 2.2E-07 7.7E-12 102.5 2.1 147 424-572 130-346 (594)
145 3rw6_A Nuclear RNA export fact 98.2 4.9E-07 1.7E-11 89.4 3.0 82 429-512 148-237 (267)
146 2p1m_B Transport inhibitor res 98.2 1.3E-07 4.6E-12 104.3 -2.1 104 471-576 372-518 (594)
147 3sb4_A Hypothetical leucine ri 98.1 7.2E-06 2.5E-10 83.7 9.5 93 471-571 226-328 (329)
148 2ra8_A Uncharacterized protein 98.0 2.1E-06 7E-11 89.1 3.7 147 424-577 139-320 (362)
149 1io0_A Tropomodulin; LRR prote 98.0 7.5E-07 2.6E-11 83.2 -0.5 112 425-543 37-164 (185)
150 3rw6_A Nuclear RNA export fact 98.0 3.1E-06 1.1E-10 83.6 3.2 76 424-501 170-257 (267)
151 1io0_A Tropomodulin; LRR prote 97.9 1.2E-06 4.1E-11 81.8 -0.8 126 439-577 27-164 (185)
152 4fdw_A Leucine rich hypothetic 97.6 0.00023 7.9E-09 74.7 10.9 150 426-582 159-340 (401)
153 2ra8_A Uncharacterized protein 97.4 0.00018 6.2E-09 74.3 6.8 141 424-575 172-341 (362)
154 4fdw_A Leucine rich hypothetic 97.3 0.00096 3.3E-08 69.9 11.4 150 425-584 204-365 (401)
155 3e4g_A ATP synthase subunit S, 96.4 0.00056 1.9E-08 62.8 0.1 82 425-506 62-150 (176)
156 1pgv_A TMD-1, tropomodulin TMD 96.3 0.00085 2.9E-08 62.8 0.9 81 425-505 42-136 (197)
157 3rfe_A Platelet glycoprotein I 96.2 0.0095 3.2E-07 51.7 6.8 38 471-508 31-68 (130)
158 3rfe_A Platelet glycoprotein I 95.9 0.0067 2.3E-07 52.7 4.6 54 428-484 12-68 (130)
159 1pgv_A TMD-1, tropomodulin TMD 95.4 0.0068 2.3E-07 56.6 2.7 94 440-540 33-136 (197)
160 3e4g_A ATP synthase subunit S, 95.3 0.014 4.7E-07 53.5 4.4 57 449-505 62-124 (176)
161 4gt6_A Cell surface protein; l 91.2 0.61 2.1E-05 48.0 9.2 86 425-516 266-353 (394)
162 4gt6_A Cell surface protein; l 90.6 0.64 2.2E-05 47.8 8.7 85 440-528 257-342 (394)
163 2w47_A Lipolytic enzyme, G-D-S 89.6 7.3 0.00025 33.7 13.5 93 87-183 39-132 (144)
164 4h09_A Hypothetical leucine ri 88.5 1.1 3.9E-05 45.5 8.6 60 442-503 257-318 (379)
165 4fs7_A Uncharacterized protein 86.4 2.5 8.7E-05 43.2 9.8 57 442-503 270-328 (394)
166 2vzp_A Aocbm35, EXO-beta-D-glu 86.2 12 0.0004 31.5 12.4 90 86-179 37-127 (127)
167 4h09_A Hypothetical leucine ri 85.2 1.4 4.7E-05 44.9 7.0 18 491-508 282-299 (379)
168 2w3j_A Carbohydrate binding mo 83.7 16 0.00055 31.6 12.3 92 87-183 38-130 (145)
169 4fs7_A Uncharacterized protein 78.4 2.3 7.9E-05 43.5 5.7 81 442-527 291-373 (394)
170 2wz8_A Cellulosome protein doc 75.9 14 0.00047 32.6 9.3 91 90-182 49-149 (156)
171 2w87_A Esterase D, XYL-CBM35; 75.1 20 0.00069 30.7 10.0 91 87-181 38-130 (139)
172 2o14_A Hypothetical protein YX 70.5 32 0.0011 34.8 11.9 79 90-184 78-157 (375)
173 2w47_A Lipolytic enzyme, G-D-S 55.1 43 0.0015 28.6 8.1 39 273-316 40-78 (144)
174 2vzp_A Aocbm35, EXO-beta-D-glu 55.1 39 0.0013 28.1 7.7 40 273-317 39-78 (127)
175 2w3j_A Carbohydrate binding mo 54.6 34 0.0012 29.4 7.4 44 273-321 39-82 (145)
176 2w87_A Esterase D, XYL-CBM35; 48.4 60 0.0021 27.6 7.9 40 273-317 39-78 (139)
177 2wz8_A Cellulosome protein doc 47.3 86 0.003 27.3 8.8 49 273-321 47-101 (156)
178 2y7l_A NT_ALS9-2, agglutinin-l 20.5 64 0.0022 31.6 3.4 62 153-230 237-299 (312)
179 2cdp_A Beta-agarase 1; carbohy 20.5 4.1E+02 0.014 22.8 10.4 39 86-129 65-103 (160)
No 1
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.92 E-value=2.7e-25 Score=207.68 Aligned_cols=148 Identities=18% Similarity=0.106 Sum_probs=113.5
Q ss_pred CcEEEccCCCCCCcCCCCceEeeCCCceecCCcccc------cCCCCCCCCCCceeeeeCCCCCCCcceEeecCCCceEE
Q 007860 30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY 103 (587)
Q Consensus 30 ~~~~i~cG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~~~~~~Y~~pv~~~~~yl 103 (587)
..|+||||++.. +|..+|+|.+|+.|...|..... ......+..+|+|+|+|+.. .+|.||+.++|+|+
T Consensus 6 ~~~~INcGg~~~-~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~~----~tY~f~v~~~G~Y~ 80 (174)
T 2jwp_A 6 VIWAVNAGGESH-VDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNEDS----FGYDIPIKEEGEYV 80 (174)
T ss_dssp EEEEEEETSSSE-EETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCSC----EEEEEECCSCEEEE
T ss_pred EEEEEECCCCCc-cCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCCC----eEEEEEeCCCeEEE
Confidence 369999999854 56789999998654323322111 11112345689999999863 79999998889999
Q ss_pred EEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEe-------------cCCeeEEEEeeCCCC
Q 007860 104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD 170 (587)
Q Consensus 104 vRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~-------------~~~~l~i~~~~~~~~ 170 (587)
|||||..-.+... ..++|||++||++++++||++.+++...+++++|.+.+ .++.|.|+|.|....
T Consensus 81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~ 159 (174)
T 2jwp_A 81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD 159 (174)
T ss_dssp EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence 9999976656554 47999999999999999999776655567888887763 567899999987667
Q ss_pred CceeeeEEeEecC
Q 007860 171 PPVIASLEVQQID 183 (587)
Q Consensus 171 ~pfIn~iEi~~l~ 183 (587)
.||||||||++.+
T Consensus 160 ~a~inaIEI~~~~ 172 (174)
T 2jwp_A 160 NPKVCALFIMKGT 172 (174)
T ss_dssp SSSEEEEEEESSC
T ss_pred CcEEEEEEEEeCc
Confidence 8999999999753
No 2
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2e-22 Score=206.71 Aligned_cols=198 Identities=21% Similarity=0.353 Sum_probs=140.0
Q ss_pred CchHHHHHHHHHHHhcCCCC-CCCCCC--CCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcc--cCchhhcCCC
Q 007860 374 TVPEQVIAMRALKESLRVPD-RMGWNG--DPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLLS 448 (587)
Q Consensus 374 ~~p~~~~aL~~lk~~~~~~~-~~~w~g--~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g--~~p~~l~~l~ 448 (587)
+.++|..||+++|..+..+. ..+|.. ++|. |.|.||.|..... ..+++.|+|++|.+.+ .+|+.+.+++
T Consensus 3 c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~----~~w~gv~C~~~~~--~~~l~~L~L~~~~l~~~~~~~~~l~~l~ 76 (313)
T 1ogq_A 3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANLP 76 (313)
T ss_dssp SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred CCHHHHHHHHHHHHhcCCcccccCCCCCCCCCc----CCCcceEeCCCCC--CceEEEEECCCCCccCCcccChhHhCCC
Confidence 67889999999999886543 247853 3442 3499999975321 1358888999888888 7888888888
Q ss_pred CCCEEEccC-CCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceee
Q 007860 449 NLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFD 526 (587)
Q Consensus 449 ~L~~L~Ls~-N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~ 526 (587)
+|++|+|++ |.+.+.+|..++. ++|++|+|++|++++.+|..++.+++|++|+|++|++.+.+|..+..+. +|+.|+
T Consensus 77 ~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ 155 (313)
T 1ogq_A 77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGIT 155 (313)
T ss_dssp TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCT-TCCEEE
T ss_pred CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCC-CCCeEE
Confidence 888888884 8888888887777 8888888888888877887777788888888888887777777777665 477777
Q ss_pred cc--------------cc-ccceEECCCCccccccccc-----ccccccccccc--------CCCCCCcEEEccCCCCCC
Q 007860 527 LS--------------VV-YICCIRRGRNDYDFGLPQD-----LMSLSAKRNRY--------QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 527 Ls--------------l~-~L~~L~L~~N~l~~~~p~~-----L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~ 578 (587)
|+ +. +|+.|+|++|++++.+|.. |+.|++++|++ ..+++|+.|+|++|++++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 235 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceee
Confidence 76 22 5677777777776555432 44455555544 344455555555555543
No 3
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A*
Probab=99.85 E-value=5.4e-22 Score=185.22 Aligned_cols=153 Identities=20% Similarity=0.239 Sum_probs=111.7
Q ss_pred eeeeeccCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCceeeeccccccCCCCCCCCchHHHHHhhhccccceEEE
Q 007860 199 VNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYN 278 (587)
Q Consensus 199 ~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~~~~~~~~~~~~~~~~t~~~i~~~~~~~~~~P~~Vy~Ta~~~~~~lt~~ 278 (587)
+++|||||||+.. .|..+|.|.+|..|..... ... ....+... ....+|..||||||.+..+++|.
T Consensus 5 ~~~~~INcGg~~~-------~d~~gr~w~~D~~~~~~g~---~~~--~~~~~~~~--~~~~~~~~lY~TaR~~~~~~tY~ 70 (174)
T 2jwp_A 5 KVIWAVNAGGESH-------VDVHGIHYRKDPLEGRVGR---ASD--YGMKLPIL--RSNPEDQVLYQTERYNEDSFGYD 70 (174)
T ss_dssp HEEEEEEETSSSE-------EETTTEEECSSCSSTTCCC---CCC--CCTTSCCS--SSCHHHHHTTTCCCCCCSCEEEE
T ss_pred cEEEEEECCCCCc-------cCCCCCEEcCCcCcccCCc---ccc--cccceEec--ccCCCCchhhhhhccCCCCeEEE
Confidence 5789999998742 2568999999987642111 000 01111111 12337899999999987799999
Q ss_pred EecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCc-cccccceecccCCcceeeeeeeEee------------cCCcc
Q 007860 279 LAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGSFAAYSWHYVAKN------------LSSTE 345 (587)
Q Consensus 279 ~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di~~~~~~~~~~~~~l~~l~------------l~~n~ 345 (587)
+++++++.|+|||||||+.. ...++|+|+|+|||+ .++++||..++|...++.+.+.+.. ..++.
T Consensus 71 f~v~~~G~Y~VrLhF~ei~~--~~~~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~ 148 (174)
T 2jwp_A 71 IPIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGK 148 (174)
T ss_dssp EECCSCEEEEEEEEEECCSC--CCSSSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSE
T ss_pred EEeCCCeEEEEEEEEecccc--CCCCCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCe
Confidence 99998899999999999975 357899999999998 7789999887776555555443321 24568
Q ss_pred EEEEEccc-chhhhhhccccccc
Q 007860 346 LTVKLVPV-VGAALISGLENYAL 367 (587)
Q Consensus 346 L~~~l~~~-~~s~~Ln~lei~~~ 367 (587)
|.+.|.|. ...|++|||||++-
T Consensus 149 L~I~f~p~~~~~a~inaIEI~~~ 171 (174)
T 2jwp_A 149 LSVEFVKGYYDNPKVCALFIMKG 171 (174)
T ss_dssp EEEEEECSSSCSSSEEEEEEESS
T ss_pred EEEEEeccCCCCcEEEEEEEEeC
Confidence 99999875 34499999999864
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.83 E-value=2.3e-20 Score=215.00 Aligned_cols=197 Identities=19% Similarity=0.267 Sum_probs=145.7
Q ss_pred CchHHHHHHHHHHHhcCCCCCCCCCCCC----CCCCCCcCc------------cceeecCCCCCCceeEEEEEcCCCCCc
Q 007860 374 TVPEQVIAMRALKESLRVPDRMGWNGDP----CAPTNWDAW------------EGITCHPNKDETAVVISQIDLGSQGLK 437 (587)
Q Consensus 374 ~~p~~~~aL~~lk~~~~~~~~~~w~g~p----c~~~~~~~~------------~gv~c~~~~~~~~~~l~~L~L~~n~l~ 437 (587)
+...|..||+++|..+..+ +|+.+. +.|. .|.| .||.|... .+++.|+|+++++.
T Consensus 266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~-~C~W~~~~~~~~w~~~~GV~C~~~-----~~V~~L~Ls~~~L~ 336 (876)
T 4ecn_A 266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIH-SLNWNFNKELDMWGDQPGVDLDNN-----GRVTGLSLAGFGAK 336 (876)
T ss_dssp HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCC-CCSCCCSSCGGGTTCCTTEEECTT-----SCEEEEECTTTCCE
T ss_pred cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCC-ccccccccccccccCcCceEecCC-----CCEEEEECccCCCC
Confidence 4567999999999998654 785432 1111 2789 99999763 36888999999999
Q ss_pred ccCchhhcCCCCCCEEEc-cCCCCCCC-----------------------------------------------------
Q 007860 438 GYISDKISLLSNLVNLNL-STNSLGGT----------------------------------------------------- 463 (587)
Q Consensus 438 g~~p~~l~~l~~L~~L~L-s~N~l~g~----------------------------------------------------- 463 (587)
|.+|+.+++|++|+.|+| ++|.++|.
T Consensus 337 G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~ 416 (876)
T 4ecn_A 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416 (876)
T ss_dssp EEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCC
T ss_pred CcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccc
Confidence 999998999999999999 77755443
Q ss_pred -----------------------CCCCCCC-CCccEEeccCCcCCc-----------------cCCcccc--CCCCCCEE
Q 007860 464 -----------------------LPSGLGQ-QSLVRLDLSDNQFTG-----------------SIPDSLT--SSSKLQLV 500 (587)
Q Consensus 464 -----------------------ip~~~~~-~~L~~L~Ls~N~l~g-----------------~iP~~l~--~l~~L~~L 500 (587)
+|..++. ++|+.|+|++|+|+| .+|+.++ ++++|+.|
T Consensus 417 i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L 496 (876)
T 4ecn_A 417 IKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDV 496 (876)
T ss_dssp CCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEE
T ss_pred cccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEE
Confidence 6777777 888888888888887 3888877 88888888
Q ss_pred EccCCcCcccCchhhhhcccCCceeecccc-----------------------ccceEECCCCcccccccc--------c
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVV-----------------------YICCIRRGRNDYDFGLPQ--------D 549 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~-----------------------~L~~L~L~~N~l~~~~p~--------~ 549 (587)
+|++|++.|.+|..++.+. +|+.|+|+.+ +|++|+|++|+++ .+|. +
T Consensus 497 ~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~ 574 (876)
T 4ecn_A 497 ELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVK 574 (876)
T ss_dssp EEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTT
T ss_pred ECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCC
Confidence 8888888888888887776 4777777622 5777888888777 6665 3
Q ss_pred ccccccccccc------CCCCCCcEEEccCCCCCCCCC
Q 007860 550 LMSLSAKRNRY------QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 550 L~~L~l~~N~i------~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
|+.|+|++|+| ..+++|+.|+|++|+|+.+|.
T Consensus 575 L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~ 612 (876)
T 4ecn_A 575 LGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPE 612 (876)
T ss_dssp CCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCT
T ss_pred CCEEECCCCCcccchhhcCCCcceEEECcCCccccchH
Confidence 55566777655 344556666666666666554
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.81 E-value=3e-20 Score=213.36 Aligned_cols=164 Identities=29% Similarity=0.406 Sum_probs=117.7
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCC-CchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS-TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~-~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv 413 (587)
.++.+.+++|.+++.+|...+. +..++.+.+..+.+. .+|..+..+..++......+ ...+.
T Consensus 395 ~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n---------------~l~~~ 457 (768)
T 3rgz_A 395 TLQELYLQNNGFTGKIPPTLSN--CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN---------------MLEGE 457 (768)
T ss_dssp CCCEEECCSSEEEEECCGGGGG--CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS---------------CCCSC
T ss_pred CccEEECCCCccccccCHHHhc--CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC---------------cccCc
Confidence 4566667777777666666655 566666666666533 55555444444433221111 01100
Q ss_pred eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc
Q 007860 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (587)
Q Consensus 414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (587)
. +.....++.|+.|+|++|.+++.+|..+..+++|+.|+|++|+++|.+|..++. ++|++|+|++|+++|.+|..++
T Consensus 458 ~--p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 458 I--PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp C--CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred C--CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 0 001112345888999999999999999999999999999999999999998888 9999999999999999999999
Q ss_pred CCCCCCEEEccCCcCcccCchhhhh
Q 007860 493 SSSKLQLVLLNNNLLEGRVPEELYS 517 (587)
Q Consensus 493 ~l~~L~~L~Ls~N~l~g~ip~~l~~ 517 (587)
.+++|+.|++++|+++|.+|..++.
T Consensus 536 ~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp GCTTCCEEECCSSEEESBCCGGGGT
T ss_pred CCCCCCEEECCCCccCCcCChHHhc
Confidence 9999999999999999889887765
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.79 E-value=3e-19 Score=200.63 Aligned_cols=196 Identities=18% Similarity=0.276 Sum_probs=154.3
Q ss_pred CchHHHHHHHHHHHhcCCCC----------CCCCCC-CCCCCCCCcCc---cceeecCCCCCCceeEEEEEcCCCCCccc
Q 007860 374 TVPEQVIAMRALKESLRVPD----------RMGWNG-DPCAPTNWDAW---EGITCHPNKDETAVVISQIDLGSQGLKGY 439 (587)
Q Consensus 374 ~~p~~~~aL~~lk~~~~~~~----------~~~w~g-~pc~~~~~~~~---~gv~c~~~~~~~~~~l~~L~L~~n~l~g~ 439 (587)
....|..||.+++..+..++ ..+|+. .+| |.| .||.|+.. .+++.|+|+++++.|.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~-----c~w~~~~GV~C~~~-----~~V~~L~L~~~~l~g~ 96 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKEL-----DMWGAQPGVSLNSN-----GRVTGLSLEGFGASGR 96 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCG-----GGTTCCTTEEECTT-----CCEEEEECTTSCCEEE
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCc-----ccccCCCCeEEcCC-----CCEEEEEecCcccCCc
Confidence 34578899999998865331 124643 222 789 99999754 3699999999999999
Q ss_pred CchhhcCCCCCCEEEccCCC------------------------------------------------------------
Q 007860 440 ISDKISLLSNLVNLNLSTNS------------------------------------------------------------ 459 (587)
Q Consensus 440 ~p~~l~~l~~L~~L~Ls~N~------------------------------------------------------------ 459 (587)
+|+++++|++|+.|+|++|.
T Consensus 97 lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~ 176 (636)
T 4eco_A 97 VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIK 176 (636)
T ss_dssp ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCC
T ss_pred CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccc
Confidence 99999999999999999884
Q ss_pred ------------------CCCCCCCCCCC-CCccEEeccCCcCCcc-----------------CCcccc--CCCCCCEEE
Q 007860 460 ------------------LGGTLPSGLGQ-QSLVRLDLSDNQFTGS-----------------IPDSLT--SSSKLQLVL 501 (587)
Q Consensus 460 ------------------l~g~ip~~~~~-~~L~~L~Ls~N~l~g~-----------------iP~~l~--~l~~L~~L~ 501 (587)
++| +|+.++. ++|++|+|++|+++|. +|+.++ ++++|++|+
T Consensus 177 ~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~ 255 (636)
T 4eco_A 177 KSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVE 255 (636)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEE
Confidence 344 7888888 9999999999999986 999999 999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccc----------------------cccceEECCCCcccccccc--------ccc
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSV----------------------VYICCIRRGRNDYDFGLPQ--------DLM 551 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl----------------------~~L~~L~L~~N~l~~~~p~--------~L~ 551 (587)
|++|++.|.+|..++.+. +|+.|+++. .+|++|+|++|+++ .+|. +|+
T Consensus 256 L~~n~l~~~~p~~l~~l~-~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~ 333 (636)
T 4eco_A 256 VYNCPNLTKLPTFLKALP-EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLG 333 (636)
T ss_dssp EECCTTCSSCCTTTTTCS-SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCC
T ss_pred ecCCcCCccChHHHhcCC-CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCC
Confidence 999999999999888876 477777651 56777788888777 6665 456
Q ss_pred cccccccccC-------CCCCCcEEEccCCCCCCCCCC
Q 007860 552 SLSAKRNRYQ-------RQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 552 ~L~l~~N~i~-------~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
.|++++|++. .+++|+.|+|++|+++.+|..
T Consensus 334 ~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~ 371 (636)
T 4eco_A 334 MLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPAN 371 (636)
T ss_dssp EEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTT
T ss_pred EEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHh
Confidence 6667777664 345677777777777776653
No 7
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=6.5e-20 Score=187.89 Aligned_cols=154 Identities=25% Similarity=0.352 Sum_probs=112.3
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C-CccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q-SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~-~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
.|+.|+|++|.+++.+|..+..+++|++|+|++|.++|.+|..+.. + +|++|++++|++++.+|..++.++ |+.|++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L 204 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence 4778889999988888888888999999999999998888888887 5 889999999999888888888887 899999
Q ss_pred cCCcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccccccc------cccccccccccc---
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLPQ------DLMSLSAKRNRY--- 560 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p~------~L~~L~l~~N~i--- 560 (587)
++|++.+.+|..+..+. +|+.|+|+ +.+|++|+|++|++++.+|. .|+.|++++|+|
T Consensus 205 s~N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDK-NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp CSSEEEECCGGGCCTTS-CCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred cCCcccCcCCHHHhcCC-CCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence 99998877777666655 46666665 34566666666666655552 344445555554
Q ss_pred ----CCCCCCcEEEccCCC-CCCCC
Q 007860 561 ----QRQKSLMLLEMESQH-AKGLP 580 (587)
Q Consensus 561 ----~~l~~L~~L~Ls~N~-l~~~P 580 (587)
..+++|+.|++++|+ +.+.|
T Consensus 284 ip~~~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 284 IPQGGNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp CCCSTTGGGSCGGGTCSSSEEESTT
T ss_pred CCCCccccccChHHhcCCCCccCCC
Confidence 234445555555555 44443
No 8
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.77 E-value=4.9e-19 Score=182.61 Aligned_cols=200 Identities=17% Similarity=0.205 Sum_probs=104.1
Q ss_pred CCchHHHHHHHHHHHhcCC-CCC--CCCC-CCCCCCCCCcCccceeecCCC----CCCceeEEEEEcCCCCCcccCchhh
Q 007860 373 STVPEQVIAMRALKESLRV-PDR--MGWN-GDPCAPTNWDAWEGITCHPNK----DETAVVISQIDLGSQGLKGYISDKI 444 (587)
Q Consensus 373 ~~~p~~~~aL~~lk~~~~~-~~~--~~w~-g~pc~~~~~~~~~gv~c~~~~----~~~~~~l~~L~L~~n~l~g~~p~~l 444 (587)
..+.++..+|+++|..+.. +.. ..|. ...|.. ..|.|.|+.|.... .....+++.|+|++|.++ .+|+.+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~-~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNP-QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCT-TSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccc-cccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 4567788999999986632 211 2452 111111 22789999984200 000123445555555554 444445
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCccc-------------
Q 007860 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGR------------- 510 (587)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~------------- 510 (587)
..+++|++|+|++|.++ .+|..++. ++|++|+|++|+++ .+|..++.+++|+.|+|++|++.+.
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 55555555555555555 45554444 55555555555555 4454455555555555554444444
Q ss_pred -------------------CchhhhhcccCCceeecc-------------ccccceEECCCCccccccc------ccccc
Q 007860 511 -------------------VPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLP------QDLMS 552 (587)
Q Consensus 511 -------------------ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p------~~L~~ 552 (587)
+|..++.+. +|+.|+|+ +.+|+.|+|++|++.+.+| +.|+.
T Consensus 179 ~~~l~~L~~L~L~~n~l~~lp~~l~~l~-~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~ 257 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIRSLPASIANLQ-NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257 (328)
T ss_dssp EEESTTCCEEEEEEECCCCCCGGGGGCT-TCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCE
T ss_pred hccCCCCCEEECcCCCcCcchHhhcCCC-CCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCE
Confidence 444444443 35555554 3456666666666555544 23455
Q ss_pred cccccccc--------CCCCCCcEEEccCCCCC
Q 007860 553 LSAKRNRY--------QRQKSLMLLEMESQHAK 577 (587)
Q Consensus 553 L~l~~N~i--------~~l~~L~~L~Ls~N~l~ 577 (587)
|++++|.+ ..+++|+.|+|++|++.
T Consensus 258 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~ 290 (328)
T 4fcg_A 258 LILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290 (328)
T ss_dssp EECTTCTTCCBCCTTGGGCTTCCEEECTTCTTC
T ss_pred EECCCCCchhhcchhhhcCCCCCEEeCCCCCch
Confidence 55666543 45566666666665443
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.77 E-value=2.1e-18 Score=198.03 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=142.9
Q ss_pred CchHHHHHHHHHHHhcCCCC-CCCCC-CCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCccc---Cch------
Q 007860 374 TVPEQVIAMRALKESLRVPD-RMGWN-GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGY---ISD------ 442 (587)
Q Consensus 374 ~~p~~~~aL~~lk~~~~~~~-~~~w~-g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~---~p~------ 442 (587)
..++|..||+++|..+..+. ..+|. +..| |.|.||.|. . .+++.|+|+++.+.|. +|+
T Consensus 9 ~~~~~~~all~~k~~~~~~~~l~~W~~~~~~-----C~w~gv~C~-~-----~~v~~L~L~~~~l~g~~~~l~~~l~~L~ 77 (768)
T 3rgz_A 9 SLYREIHQLISFKDVLPDKNLLPDWSSNKNP-----CTFDGVTCR-D-----DKVTSIDLSSKPLNVGFSAVSSSLLSLT 77 (768)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSSTTCCTTSCG-----GGSTTEEEE-T-----TEEEEEECTTSCCCEEHHHHHHHTTTCT
T ss_pred CCHHHHHHHHHHHhhCCCcccccCCCCCCCC-----cCCcceEEC-C-----CcEEEEECCCCCcCCccCccChhHhccC
Confidence 46789999999999876543 34796 4455 899999997 2 3699999999999887 554
Q ss_pred -----------------hhcCCCCCCEEEccCCCCCCCCCC--CCCC-CCccEEeccCCcCCccCCccc-cCCCCCCEEE
Q 007860 443 -----------------KISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQFTGSIPDSL-TSSSKLQLVL 501 (587)
Q Consensus 443 -----------------~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~-~~L~~L~Ls~N~l~g~iP~~l-~~l~~L~~L~ 501 (587)
.++.+++|++|+|++|.++|.+|. .++. ++|++|+|++|++++.+|..+ .++++|++|+
T Consensus 78 ~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 157 (768)
T 3rgz_A 78 GLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157 (768)
T ss_dssp TCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEE
T ss_pred cccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEE
Confidence 556667777777777777777776 6666 777777777777777776655 6677777777
Q ss_pred ccCCcCcccCchh---hhhcccCCceeecc------------ccccceEECCCCccccccc-----ccccccccccccc-
Q 007860 502 LNNNLLEGRVPEE---LYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY- 560 (587)
Q Consensus 502 Ls~N~l~g~ip~~---l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i- 560 (587)
|++|++++..|.. +..+. +|+.|+++ +.+|++|+|++|++++.+| +.|+.|++++|++
T Consensus 158 Ls~n~l~~~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 158 LSANSISGANVVGWVLSDGCG-ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCSSCCEEETHHHHHHTTCCT-TCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCC
T ss_pred CCCCccCCcCChhhhhhccCC-CCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCC
Confidence 7777777666655 34443 57777776 5678888888888876555 4677777888876
Q ss_pred -------CCCCCCcEEEccCCCCCCC
Q 007860 561 -------QRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 561 -------~~l~~L~~L~Ls~N~l~~~ 579 (587)
..+++|+.|+|++|++++.
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~ 262 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGP 262 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEES
T ss_pred CcccHHHhcCCCCCEEECCCCcccCc
Confidence 4678888888888888754
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.73 E-value=1.1e-18 Score=196.10 Aligned_cols=217 Identities=16% Similarity=0.210 Sum_probs=127.6
Q ss_pred CccEEEEEcccchhhhhhcccccccccCCCCC------------------chHHHH--HHHHHHHhcCCCCCCCCCCCCC
Q 007860 343 STELTVKLVPVVGAALISGLENYALVPNDLST------------------VPEQVI--AMRALKESLRVPDRMGWNGDPC 402 (587)
Q Consensus 343 ~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~------------------~p~~~~--aL~~lk~~~~~~~~~~w~g~pc 402 (587)
.|++++ +|+..+. +..++.+.+..+.+.. +|+++. .+..++......+ ...+
T Consensus 192 ~n~l~~-ip~~l~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n--~l~~--- 263 (636)
T 4eco_A 192 SNNITF-VSKAVMR--LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNC--PNLT--- 263 (636)
T ss_dssp SCEEEE-ECGGGGG--CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECC--TTCS---
T ss_pred cCCCcc-CCHHHhc--ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCC--cCCc---
Confidence 467887 8887776 7788888887777655 565544 4444433211111 0001
Q ss_pred CCCCCcCccceeecCCCCCCceeEEEEEcCCCC-Ccc-cCchhhcCC------CCCCEEEccCCCCCCCCCC--CCCC-C
Q 007860 403 APTNWDAWEGITCHPNKDETAVVISQIDLGSQG-LKG-YISDKISLL------SNLVNLNLSTNSLGGTLPS--GLGQ-Q 471 (587)
Q Consensus 403 ~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~-l~g-~~p~~l~~l------~~L~~L~Ls~N~l~g~ip~--~~~~-~ 471 (587)
. .+.....++.|+.|+|++|. ++| .+|..++.+ ++|+.|+|++|+++ .+|. .++. +
T Consensus 264 ----------~--~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~ 330 (636)
T 4eco_A 264 ----------K--LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK 330 (636)
T ss_dssp ----------S--CCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT
T ss_pred ----------c--ChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC
Confidence 0 01112233456667777776 666 666666665 66667777766666 6666 6666 6
Q ss_pred CccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc---------------ccccceEE
Q 007860 472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIR 536 (587)
Q Consensus 472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~ 536 (587)
+|++|++++|+++|.+| .++.+++|+.|+|++|+++ .+|..+..+..+|+.|+++ +.+|+.|+
T Consensus 331 ~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 331 KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence 66777777776666666 6666666666666666666 5666665555336666665 11466666
Q ss_pred CCCCcccccccc-------------cccccccccccc--------CCCCCCcEEEccCCCCCCCCCC
Q 007860 537 RGRNDYDFGLPQ-------------DLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 537 L~~N~l~~~~p~-------------~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
|++|++++.+|. .|+.|++++|+| ..+++|+.|+|++|+|+.+|..
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 666666654432 344555666655 2345566666666666665553
No 11
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.73 E-value=4e-17 Score=164.48 Aligned_cols=179 Identities=20% Similarity=0.153 Sum_probs=134.3
Q ss_pred CCCCCCcCcc---ceeecCCCC-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CC
Q 007860 402 CAPTNWDAWE---GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QS 472 (587)
Q Consensus 402 c~~~~~~~~~---gv~c~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~ 472 (587)
|...|.|... .+.|..... ...+.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..|..+.. ++
T Consensus 2 CP~~C~C~~~~~~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 81 (285)
T 1ozn_A 2 CPGACVCYNEPKVTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL 81 (285)
T ss_dssp CCTTCEEECSSSCEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred cCCCceECCCCCeEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccC
Confidence 5444445433 366654332 12346888999999998877778888999999999999988777888888 88
Q ss_pred ccEEeccCCc-CCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEEC
Q 007860 473 LVRLDLSDNQ-FTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRR 537 (587)
Q Consensus 473 L~~L~Ls~N~-l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L 537 (587)
|++|++++|+ +....|..+..+++|+.|++++|++.+..|..+..+. +|+.|+++ +.+|+.|+|
T Consensus 82 L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 160 (285)
T 1ozn_A 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-ALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160 (285)
T ss_dssp CCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-CCCEEECCCCcccccCHhHhccCCCccEEEC
Confidence 9999999987 7755577888888999999999988865555555555 58888877 567888899
Q ss_pred CCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCC
Q 007860 538 GRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 538 ~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
++|++++..+ +.|+.|++++|+| ..+++|+.|+|++|+++++|.
T Consensus 161 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 218 (285)
T 1ozn_A 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT 218 (285)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH
T ss_pred CCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCH
Confidence 8888874222 4577788888876 456788899999998888874
No 12
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=5.4e-17 Score=174.69 Aligned_cols=184 Identities=20% Similarity=0.205 Sum_probs=133.9
Q ss_pred CCCCCCCCcC--ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860 400 DPCAPTNWDA--WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q 471 (587)
Q Consensus 400 ~pc~~~~~~~--~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~ 471 (587)
..|...|.|. |..+.|...... ....++.|+|++|.+++..+..|.++++|+.|+|++|.+++..|..+.. +
T Consensus 44 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 123 (452)
T 3zyi_A 44 QNCPSVCSCSNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLA 123 (452)
T ss_dssp CCCCTTSEECSSSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCCCEECCCCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcc
Confidence 3566655565 467888765432 2346889999999999988999999999999999999999777788888 9
Q ss_pred CccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-----------------------
Q 007860 472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------------------- 528 (587)
Q Consensus 472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------------------- 528 (587)
+|++|+|++|++++..+..+..+++|+.|+|++|++. .+|...+....+|+.|+++
T Consensus 124 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 202 (452)
T 3zyi_A 124 SLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLN 202 (452)
T ss_dssp TCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEE
T ss_pred cCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEE
Confidence 9999999999999666666888999999999999988 4554322222235555443
Q ss_pred --------------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCC
Q 007860 529 --------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 529 --------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P 580 (587)
+.+|+.|+|++|++++..| ++|+.|++++|+| .++++|+.|+|++|+|+++|
T Consensus 203 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 282 (452)
T 3zyi_A 203 LGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282 (452)
T ss_dssp CTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccC
Confidence 2355666666666654333 3456666777765 45678888888888888888
Q ss_pred CCCC
Q 007860 581 TLPL 584 (587)
Q Consensus 581 ~~~~ 584 (587)
...+
T Consensus 283 ~~~~ 286 (452)
T 3zyi_A 283 HDLF 286 (452)
T ss_dssp TTSS
T ss_pred hHHh
Confidence 7543
No 13
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.70 E-value=3e-17 Score=157.43 Aligned_cols=165 Identities=19% Similarity=0.206 Sum_probs=122.5
Q ss_pred CCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccE
Q 007860 402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475 (587)
Q Consensus 402 c~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~ 475 (587)
|...|.|.|.++.|...... ....++.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|++
T Consensus 1 Cp~~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 44445699999999865432 2346899999999999877778899999999999999999554555667 99999
Q ss_pred EeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchh-hhhcccCCceeeccccccceEECCCCccccccc------c
Q 007860 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------Q 548 (587)
Q Consensus 476 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~ 548 (587)
|+|++|++++..+..+..+++|++|+|++|++.+ +|.. +..+. +|++|+|++|++++..+ +
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~-----------~L~~L~l~~N~l~~~~~~~~~~l~ 148 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLT-----------QLKDLRLYQNQLKSVPDGVFDRLT 148 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCT-----------TCCEEECCSSCCSCCCTTTTTTCT
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcc-cCHhHhccCC-----------cCCEEECCCCccceeCHHHhccCC
Confidence 9999999996666668999999999999999995 5544 44433 45666666777663221 3
Q ss_pred cccccccccccc-CCCCCCcEEEccCCCCCC
Q 007860 549 DLMSLSAKRNRY-QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 549 ~L~~L~l~~N~i-~~l~~L~~L~Ls~N~l~~ 578 (587)
.|+.|++++|.+ ..++.|+.|+++.|+++|
T Consensus 149 ~L~~L~l~~N~~~~~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 149 SLQYIWLHDNPWDCTCPGIRYLSEWINKHSG 179 (208)
T ss_dssp TCCEEECCSCCBCCCTTTTHHHHHHHHHCTT
T ss_pred CccEEEecCCCeecCCCCHHHHHHHHHhCCc
Confidence 456666777766 345566777776666663
No 14
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.70 E-value=1e-16 Score=171.87 Aligned_cols=184 Identities=18% Similarity=0.211 Sum_probs=119.3
Q ss_pred CCCCCCCCcC--ccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C
Q 007860 400 DPCAPTNWDA--WEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q 471 (587)
Q Consensus 400 ~pc~~~~~~~--~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~ 471 (587)
.+|...|.|. +..+.|....... ...++.|+|++|.+.+..+..|.++++|+.|+|++|.+++..+..+.. +
T Consensus 33 ~~Cp~~C~C~~~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~ 112 (440)
T 3zyj_A 33 QTCPSVCSCSNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA 112 (440)
T ss_dssp CCCCSSSEECTTSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS
T ss_pred ccCCCCCEeCCCCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc
Confidence 4676666665 5678887544321 234677788888877777777777777777777777777555566666 7
Q ss_pred CccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCch-hhhhcc------------------------cCCceee
Q 007860 472 SLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIG------------------------VHGGAFD 526 (587)
Q Consensus 472 ~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~------------------------~~L~~l~ 526 (587)
+|++|+|++|+++...+..+..+++|+.|+|++|++.. +|. .+..+. .+|+.|+
T Consensus 113 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~ 191 (440)
T 3zyj_A 113 NLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLN 191 (440)
T ss_dssp SCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEE
T ss_pred cCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeec
Confidence 77777777777774444457777777777777777763 333 222222 2344444
Q ss_pred cc------------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCC
Q 007860 527 LS------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 527 Ls------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P 580 (587)
|+ +.+|+.|+|++|++++..| ++|+.|+|++|+| ..+++|+.|+|++|+|+++|
T Consensus 192 L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 271 (440)
T 3zyj_A 192 LAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271 (440)
T ss_dssp CTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC
T ss_pred CCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC
Confidence 44 3356666666666654333 3456666777765 45678888888888888888
Q ss_pred CCCC
Q 007860 581 TLPL 584 (587)
Q Consensus 581 ~~~~ 584 (587)
...+
T Consensus 272 ~~~~ 275 (440)
T 3zyj_A 272 HDLF 275 (440)
T ss_dssp TTTT
T ss_pred hhHh
Confidence 7543
No 15
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.69 E-value=3.4e-17 Score=166.68 Aligned_cols=178 Identities=17% Similarity=0.175 Sum_probs=101.0
Q ss_pred CCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCC--CCCCCCC-CCc
Q 007860 402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT--LPSGLGQ-QSL 473 (587)
Q Consensus 402 c~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~--ip~~~~~-~~L 473 (587)
|...|.|.|.++.|...... ....++.|+|++|.++...+..+.++++|+.|+|++|.++.. +|..+.. ++|
T Consensus 1 CP~~C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred CcCCCeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 44445589999999865432 224688899999998854445578888888888888888722 2333333 445
Q ss_pred cEEeccCCcCCccCCcc-------------------------ccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860 474 VRLDLSDNQFTGSIPDS-------------------------LTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~-------------------------l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
++|+|++|+++ .+|.. +..+++|+.|++++|.+.+..|..+..+. +|+.|+++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~ 158 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMA 158 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCT-TCCEEECT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCc-CCCEEECC
Confidence 55555555544 34444 44455555555555555443333333333 35555444
Q ss_pred ---------------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCC
Q 007860 529 ---------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 529 ---------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~ 579 (587)
+.+|+.|+|++|++++..| +.|+.|++++|+| ..+++|+.|+|++|++++.
T Consensus 159 ~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp TCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred CCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 3345555565555553322 2355555666654 3345666666666666654
Q ss_pred CC
Q 007860 580 PT 581 (587)
Q Consensus 580 P~ 581 (587)
+.
T Consensus 239 ~~ 240 (306)
T 2z66_A 239 KK 240 (306)
T ss_dssp SS
T ss_pred CH
Confidence 43
No 16
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=3.1e-16 Score=161.41 Aligned_cols=180 Identities=17% Similarity=0.155 Sum_probs=121.9
Q ss_pred CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860 400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (587)
Q Consensus 400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L 473 (587)
..|...|.|.|..+.|...... ..+.++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..+.. ++|
T Consensus 23 ~~cp~~c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (330)
T 1xku_A 23 PVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 102 (330)
T ss_dssp CCCCTTCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred CCCCCCCcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCC
Confidence 4566666689999999754422 2346888999999999877778999999999999999999877888888 999
Q ss_pred cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc-------------------------cCCceeecc
Q 007860 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG-------------------------VHGGAFDLS 528 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~-------------------------~~L~~l~Ls 528 (587)
++|++++|+++ .+|..+. ++|+.|++++|++.+..+..+..+. .+|+.|+++
T Consensus 103 ~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~ 179 (330)
T 1xku_A 103 ERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA 179 (330)
T ss_dssp CEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred CEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence 99999999988 6776543 5666666666666532222233322 134444444
Q ss_pred -----------ccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCC
Q 007860 529 -----------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 529 -----------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
..+|++|+|++|++++..| +.|+.|++++|+| ..+++|+.|+|++|+|+.+|..
T Consensus 180 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~ 258 (330)
T 1xku_A 180 DTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258 (330)
T ss_dssp SSCCCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTT
T ss_pred CCccccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChh
Confidence 1345566666666554322 3455566666655 3456677777777777777654
No 17
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=6e-18 Score=174.44 Aligned_cols=238 Identities=14% Similarity=0.158 Sum_probs=169.1
Q ss_pred eEEEEEECCccccccceecccCCcceeeeeeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHH
Q 007860 306 RVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRAL 385 (587)
Q Consensus 306 r~F~V~in~~~l~~~di~~~~~~~~~~~~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~l 385 (587)
++-.+.+.++.+..++ ..+. ....++.+++++|.+. .+|...+. +..++.+.+..+.+..+|..+..+..+
T Consensus 82 ~l~~L~L~~n~l~~lp-----~~l~-~l~~L~~L~L~~n~l~-~lp~~~~~--l~~L~~L~Ls~n~l~~lp~~l~~l~~L 152 (328)
T 4fcg_A 82 GRVALELRSVPLPQFP-----DQAF-RLSHLQHMTIDAAGLM-ELPDTMQQ--FAGLETLTLARNPLRALPASIASLNRL 152 (328)
T ss_dssp TCCEEEEESSCCSSCC-----SCGG-GGTTCSEEEEESSCCC-CCCSCGGG--GTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred ceeEEEccCCCchhcC-----hhhh-hCCCCCEEECCCCCcc-chhHHHhc--cCCCCEEECCCCccccCcHHHhcCcCC
Confidence 3345556665554322 1111 1336788889999998 88887776 788999999888888888876665555
Q ss_pred HHhcCCCCCCCCCCCCCCCCCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC
Q 007860 386 KESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP 465 (587)
Q Consensus 386 k~~~~~~~~~~w~g~pc~~~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip 465 (587)
+......+ ...+. .|.. +..... ......++.|+.|+|++|.++ .+|..++.+++|+.|+|++|.++ .+|
T Consensus 153 ~~L~L~~n--~~~~~--~p~~---~~~~~~-~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~ 222 (328)
T 4fcg_A 153 RELSIRAC--PELTE--LPEP---LASTDA-SGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALG 222 (328)
T ss_dssp CEEEEEEE--TTCCC--CCSC---SEEEC--CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCC
T ss_pred CEEECCCC--CCccc--cChh---Hhhccc-hhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCc
Confidence 44321110 01110 1111 110000 011112456899999999999 88999999999999999999999 577
Q ss_pred CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860 466 SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF 544 (587)
Q Consensus 466 ~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~ 544 (587)
+.+.. ++|++|+|++|++.+.+|..++.+++|+.|+|++|++.+.+|..+..+. +|+.|+|++|++.+
T Consensus 223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-----------~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT-----------QLEKLDLRGCVNLS 291 (328)
T ss_dssp GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT-----------TCCEEECTTCTTCC
T ss_pred hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC-----------CCCEEeCCCCCchh
Confidence 78888 9999999999999999999999999999999999999999998877644 47788888999998
Q ss_pred ccccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860 545 GLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 545 ~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
.+|..+.. +++|+.+++..|.+..+++..
T Consensus 292 ~iP~~l~~----------L~~L~~l~l~~~~~~~l~~~~ 320 (328)
T 4fcg_A 292 RLPSLIAQ----------LPANCIILVPPHLQAQLDQHR 320 (328)
T ss_dssp CCCGGGGG----------SCTTCEEECCGGGSCC-----
T ss_pred hccHHHhh----------ccCceEEeCCHHHHHHHhhhh
Confidence 99987544 457888888888777766543
No 18
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.68 E-value=3.5e-16 Score=156.41 Aligned_cols=178 Identities=21% Similarity=0.256 Sum_probs=115.8
Q ss_pred CCCCCCCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CC
Q 007860 396 GWNGDPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LG 469 (587)
Q Consensus 396 ~w~g~pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~ 469 (587)
.|.|..|. +...+..+.|....... ...++.|+|++|.+++..+..+..+++|++|+|++|.++ .+|.. +.
T Consensus 6 ~~~~~~C~--c~~~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~ 82 (270)
T 2o6q_A 6 KKDGGVCS--CNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFK 82 (270)
T ss_dssp GGGTCSBE--EETTTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTS
T ss_pred CCCCCCCE--eCCCCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhc
Confidence 45555553 00135566665443221 235888999999999777778999999999999999998 55554 46
Q ss_pred C-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccce
Q 007860 470 Q-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICC 534 (587)
Q Consensus 470 ~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~ 534 (587)
. ++|++|+|++|++++..+..+..+++|+.|+|++|++++..+..+..+. +|+.|+|+ +.+|+.
T Consensus 83 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 161 (270)
T 2o6q_A 83 ELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT-KLTYLSLGYNELQSLPKGVFDKLTSLKE 161 (270)
T ss_dssp SCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCc-CCCEEECCCCcCCccCHhHccCCcccce
Confidence 6 9999999999999966566778899999999999999854444444443 46666665 344555
Q ss_pred EECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCC
Q 007860 535 IRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAK 577 (587)
Q Consensus 535 L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~ 577 (587)
|+|++|+++...+ ++|+.|++++|+| ..+.+|+.|+|++|.+.
T Consensus 162 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 162 LRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred eEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 5555555542111 2344445555544 23344555555555543
No 19
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.68 E-value=2.2e-16 Score=158.30 Aligned_cols=157 Identities=15% Similarity=0.113 Sum_probs=84.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.++.|+|++|.+++..+..+..+++|+.|+|++|.+++..+..+.. ++|++|+|++|++++..|..+..+++|+.|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 3566666666666555556666666666666666666444445555 666666666666665555555566666666666
Q ss_pred CCcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCcccccccc------ccc----ccccccc
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLPQ------DLM----SLSAKRN 558 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p~------~L~----~L~l~~N 558 (587)
+|++.+..+..+..+. +|+.|+++ +.+|++|+|++|++++..+. .+. .|++++|
T Consensus 109 ~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 109 ETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TSCCCCSTTCCCTTCT-TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCccccCchhcccCC-CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 6665532222333333 35555544 34555666666665532221 122 4455555
Q ss_pred ccC-------CCCCCcEEEccCCCCCCCCCC
Q 007860 559 RYQ-------RQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 559 ~i~-------~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
+|. ...+|+.|+|++|+|+++|..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 218 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDG 218 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTT
T ss_pred cccccCccccCCCcccEEECCCCceeecCHh
Confidence 542 122456666666666665543
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.68 E-value=1.3e-16 Score=171.26 Aligned_cols=128 Identities=18% Similarity=0.187 Sum_probs=78.6
Q ss_pred CCCCCCCCcCccceeecCCCCCC----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC-CCCC-CCc
Q 007860 400 DPCAPTNWDAWEGITCHPNKDET----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSL 473 (587)
Q Consensus 400 ~pc~~~~~~~~~gv~c~~~~~~~----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~-~~L 473 (587)
+||...|.|....+.|....... .+.++.|+|++|.+++..|..+.++++|++|+|++|.+.+.+++ .+.. ++|
T Consensus 2 ~p~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 2 DPGTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp -----CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred CCccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 56765554555558887554322 24577888888888877777777777777777777777655543 4555 777
Q ss_pred cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchh--hhhcccCCceeecc
Q 007860 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE--LYSIGVHGGAFDLS 528 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~--l~~~~~~L~~l~Ls 528 (587)
++|+|++|++++..|..++.+++|++|+|++|++++.+|.. +..+. +|+.|+|+
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~-~L~~L~L~ 137 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLT-SLEMLVLR 137 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCT-TCCEEECC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcc-cCCEEECC
Confidence 77777777777666666666666666666666666433332 33333 35555544
No 21
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=2e-16 Score=153.36 Aligned_cols=157 Identities=12% Similarity=0.153 Sum_probs=125.1
Q ss_pred CCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCc-hhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860 401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (587)
Q Consensus 401 pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L 473 (587)
.|...|.|.|..+.|....... ...++.|+|++|.+++..+ ..+..+++|+.|+|++|++++..+..+.. ++|
T Consensus 4 ~CP~~C~C~~~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L 83 (220)
T 2v70_A 4 ACPEKCRCEGTTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGV 83 (220)
T ss_dssp CCCTTCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCCCCEECCCEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCC
Confidence 5777777999999998655322 2247789999999998765 45899999999999999999777778888 999
Q ss_pred cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccc
Q 007860 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSL 553 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L 553 (587)
++|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+ .+|+.|+|++|++++..|..
T Consensus 84 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~---- 148 (220)
T 2v70_A 84 NEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL-----------SSVRLLSLYDNQITTVAPGA---- 148 (220)
T ss_dssp CEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC-----------TTCSEEECTTSCCCCBCTTT----
T ss_pred CEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC-----------ccCCEEECCCCcCCEECHHH----
Confidence 999999999997777779999999999999999997666666543 35778888899998544543
Q ss_pred cccccccCCCCCCcEEEccCCCCCC
Q 007860 554 SAKRNRYQRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 554 ~l~~N~i~~l~~L~~L~Ls~N~l~~ 578 (587)
|..+.+|+.|+|++|.+.+
T Consensus 149 ------~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 149 ------FDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp ------TTTCTTCCEEECCSCCEEC
T ss_pred ------hcCCCCCCEEEecCcCCcC
Confidence 3445677777777777653
No 22
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.67 E-value=2.9e-16 Score=155.26 Aligned_cols=158 Identities=20% Similarity=0.225 Sum_probs=123.8
Q ss_pred ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcC
Q 007860 410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (587)
Q Consensus 410 ~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l 483 (587)
+..+.|...... ....++.|+|++|.+.+..+..+..+++|++|+|++|.+++..|..+.. ++|++|+|++|++
T Consensus 16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 95 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95 (251)
T ss_dssp GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence 455666544322 2245889999999999988889999999999999999999877777888 9999999999999
Q ss_pred CccCCccccCCCCCCEEEccCCcCcccCchhh-hhcccCCceeeccccccceEECCCCccccccc------ccccccccc
Q 007860 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAK 556 (587)
Q Consensus 484 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~ 556 (587)
++..+..+..+++|+.|+|++|++++ +|... ..+ .+|+.|+|++|++++..+ ++|+.|+|+
T Consensus 96 ~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l-----------~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 96 ASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRL-----------TKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTC-----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cccChhHhcccCCCCEEEcCCCcCCC-cChhHhccC-----------CcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 97767778999999999999999994 55543 333 346666777777764222 457777888
Q ss_pred cccc--------CCCCCCcEEEccCCCCCCC
Q 007860 557 RNRY--------QRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 557 ~N~i--------~~l~~L~~L~Ls~N~l~~~ 579 (587)
+|+| ..+++|+.|+|++|++++-
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 8876 4567899999999998876
No 23
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=5.5e-16 Score=151.28 Aligned_cols=150 Identities=17% Similarity=0.202 Sum_probs=121.3
Q ss_pred cCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC
Q 007860 408 DAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN 481 (587)
Q Consensus 408 ~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N 481 (587)
|+|.++.|...... ....++.|+|++|.+++..|..+..+++|+.|+|++|+|.+..+..+.. ++|+.|+|++|
T Consensus 19 Cs~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 19 CSGTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp EETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EeCCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 89999999865432 2346899999999999998999999999999999999998444445566 99999999999
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccC
Q 007860 482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQ 561 (587)
Q Consensus 482 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~ 561 (587)
+|++..+..+..+++|+.|+|++|+|+ .+|..+..+. +|+.|+|++|+++ .+|.. .|.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~-----------~L~~L~L~~N~l~-~~~~~---------~~~ 156 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT-----------HLTHLALDQNQLK-SIPHG---------AFD 156 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCT-----------TCSEEECCSSCCC-CCCTT---------TTT
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCC-----------CCCEEECCCCcCC-ccCHH---------HHh
Confidence 999666667899999999999999999 7888775543 5778888899887 44432 245
Q ss_pred CCCCCcEEEccCCCCCCC
Q 007860 562 RQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 562 ~l~~L~~L~Ls~N~l~~~ 579 (587)
.+.+|+.|+|++|.+..-
T Consensus 157 ~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TCTTCCEEECTTSCBCTT
T ss_pred CCCCCCEEEeeCCCccCC
Confidence 566788888888877654
No 24
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=3.3e-16 Score=151.89 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=121.8
Q ss_pred CCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc
Q 007860 401 PCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (587)
Q Consensus 401 pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~ 474 (587)
+|...|.|.|..+.|....... ...++.|+|++|.|++..+..+..+++|+.|+|++|++++..|..+.. ++|+
T Consensus 4 ~CP~~C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~ 83 (220)
T 2v9t_B 4 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLN 83 (220)
T ss_dssp CSCTTSEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCC
T ss_pred CCCCCCEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCC
Confidence 6777777999999998654322 236899999999999888889999999999999999999888999998 9999
Q ss_pred EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccccccccc
Q 007860 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLS 554 (587)
Q Consensus 475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~ 554 (587)
+|+|++|+|+...+..+..+++|+.|+|++|++.+..|..+..+ .+|+.|+|++|++++ ++..
T Consensus 84 ~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~-~~~~----- 146 (220)
T 2v9t_B 84 SLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL-----------HNLNLLSLYDNKLQT-IAKG----- 146 (220)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCSC-CCTT-----
T ss_pred EEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC-----------CCCCEEECCCCcCCE-ECHH-----
Confidence 99999999994444457899999999999999997556555543 347778888888874 3321
Q ss_pred ccccccCCCCCCcEEEccCCCCC
Q 007860 555 AKRNRYQRQKSLMLLEMESQHAK 577 (587)
Q Consensus 555 l~~N~i~~l~~L~~L~Ls~N~l~ 577 (587)
.|..+.+|+.|+|++|.+.
T Consensus 147 ----~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 ----TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ----TTTTCTTCCEEECCSSCEE
T ss_pred ----HHhCCCCCCEEEeCCCCcC
Confidence 1334556666666666553
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=4.5e-16 Score=155.63 Aligned_cols=169 Identities=19% Similarity=0.261 Sum_probs=135.7
Q ss_pred CcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc
Q 007860 407 WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (587)
Q Consensus 407 ~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g 485 (587)
+|.|.|..|.... ..+.+++++++++ .+|..+. ++|+.|+|++|.+++..+..+.. ++|++|+|++|+++.
T Consensus 4 ~C~~~~~~C~c~~-----~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 75 (270)
T 2o6q_A 4 LCKKDGGVCSCNN-----NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT 75 (270)
T ss_dssp CBGGGTCSBEEET-----TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC
T ss_pred cCCCCCCCCEeCC-----CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe
Confidence 4799999997643 2457999999998 4676554 68999999999999666667888 999999999999995
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc----
Q 007860 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP---- 547 (587)
Q Consensus 486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p---- 547 (587)
..+..+..+++|+.|+|++|++.+ +|...+....+|+.|+++ +.+|+.|+|++|++++..+
T Consensus 76 i~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 154 (270)
T 2o6q_A 76 LPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD 154 (270)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCCC-CCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred eChhhhcCCCCCCEEECCCCcCCc-CCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc
Confidence 444456889999999999999994 665544334469999887 5789999999999874222
Q ss_pred --ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860 548 --QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 548 --~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
+.|+.|++++|+| ..+++|+.|+|++|+|+++|...+
T Consensus 155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 201 (270)
T 2o6q_A 155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201 (270)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHh
Confidence 4678888999976 467899999999999999997543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.67 E-value=1.2e-16 Score=171.66 Aligned_cols=117 Identities=11% Similarity=0.041 Sum_probs=66.7
Q ss_pred eeeEeecCCccEEEEEccc-chhhhhhcccccccccCCCCCc-hHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccc
Q 007860 335 HYVAKNLSSTELTVKLVPV-VGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEG 412 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~-~~s~~Ln~lei~~~~~~~~~~~-p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~g 412 (587)
.++.+++++|.+.+.+++. ... +..++.+.+..+.+..+ |..+..+..++...... |...+
T Consensus 55 ~L~~L~L~~n~~~~~i~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~---------------n~l~~ 117 (455)
T 3v47_A 55 DLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQ---------------CNLDG 117 (455)
T ss_dssp TCCEEECCCCSTTCEECTTTTTT--CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTT---------------SCCBT
T ss_pred cccEEECcCCcccceECcccccc--cccCCEEeCCCCccCccChhhccCcccCCEEeCCC---------------CCCCc
Confidence 4666777777665555443 333 55666666666655443 33333333332211110 11221
Q ss_pred eeecCCCCCCceeEEEEEcCCCCCcccCchh-hcCCCCCCEEEccCCCCCCCCCCCC
Q 007860 413 ITCHPNKDETAVVISQIDLGSQGLKGYISDK-ISLLSNLVNLNLSTNSLGGTLPSGL 468 (587)
Q Consensus 413 v~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~ 468 (587)
..-.......+..|+.|+|++|.+.+..|.. +..+++|++|+|++|.+++..|..+
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l 174 (455)
T 3v47_A 118 AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDL 174 (455)
T ss_dssp HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTS
T ss_pred cccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhh
Confidence 1111111223456888888888888877766 7888889999998888887766544
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.67 E-value=6.7e-17 Score=186.14 Aligned_cols=228 Identities=14% Similarity=0.181 Sum_probs=130.1
Q ss_pred eeeeEeecCCccEEEEEcccchhhhhhcccccccccCC-CC--CchHHHHHHH-------HHHHhcCCCCCCCCCCCCCC
Q 007860 334 WHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPND-LS--TVPEQVIAMR-------ALKESLRVPDRMGWNGDPCA 403 (587)
Q Consensus 334 ~~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~-~~--~~p~~~~aL~-------~lk~~~~~~~~~~w~g~pc~ 403 (587)
..++.+++++|.+.+.+|+..+. +..++.+.+..+. +. .+|..+..+. .++......+.. .. .
T Consensus 491 ~~L~~L~Ls~N~l~~~iP~~l~~--L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L--~~---i 563 (876)
T 4ecn_A 491 KDLTDVELYNCPNMTQLPDFLYD--LPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL--EE---F 563 (876)
T ss_dssp TTCCEEEEESCTTCCSCCGGGGG--CSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC--CB---C
T ss_pred CCCCEEECcCCCCCccChHHHhC--CCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC--Cc---c
Confidence 35778888888888888877776 7788888888876 65 4888877766 443322211111 00 1
Q ss_pred CC--CCc---C-------ccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCC-CCEEEccCCCCCCCCCCCCCC
Q 007860 404 PT--NWD---A-------WEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSN-LVNLNLSTNSLGGTLPSGLGQ 470 (587)
Q Consensus 404 ~~--~~~---~-------~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~-L~~L~Ls~N~l~g~ip~~~~~ 470 (587)
|. ... . ...+...+ ....++.|+.|+|++|.++ .+|..+..+++ |+.|+|++|.++ .+|..+..
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~ 640 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNA 640 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCT
T ss_pred CChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhc
Confidence 11 000 0 01111111 2233456667777777766 66666667766 777777777776 66666555
Q ss_pred -C--CccEEeccCCcCCccCCcc---cc--CCCCCCEEEccCCcCcccCchhhhhcccCCceeeccc-----------c-
Q 007860 471 -Q--SLVRLDLSDNQFTGSIPDS---LT--SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSV-----------V- 530 (587)
Q Consensus 471 -~--~L~~L~Ls~N~l~g~iP~~---l~--~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl-----------~- 530 (587)
. +|+.|+|++|+++|.+|.. ++ .+++|+.|+|++|++. .+|..++....+|+.|+|+. .
T Consensus 641 ~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~ 719 (876)
T 4ecn_A 641 KSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTSIPENSLKP 719 (876)
T ss_dssp TCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSC
T ss_pred cccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCccChHHhcc
Confidence 2 3777777777776655532 22 2346677777777776 56666654434566666650 0
Q ss_pred ---------ccceEECCCCccccccc--------ccccccccccccc-------CCCCCCcEEEccC
Q 007860 531 ---------YICCIRRGRNDYDFGLP--------QDLMSLSAKRNRY-------QRQKSLMLLEMES 573 (587)
Q Consensus 531 ---------~L~~L~L~~N~l~~~~p--------~~L~~L~l~~N~i-------~~l~~L~~L~Ls~ 573 (587)
+|+.|+|++|+++ .+| +.|+.|+|++|+| ..+++|+.|+|++
T Consensus 720 ~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 720 KDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp TTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCC
T ss_pred ccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCC
Confidence 5566666666655 333 2344455555554 2344556666554
No 28
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=3.7e-16 Score=161.03 Aligned_cols=177 Identities=16% Similarity=0.207 Sum_probs=115.9
Q ss_pred CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860 400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (587)
Q Consensus 400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L 473 (587)
..|...|.|.|..+.|...... ..+.++.|+|++|.+.+..|..+.++++|+.|+|++|.+++..|..+.. ++|
T Consensus 25 ~~cp~~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 104 (332)
T 2ft3_A 25 AMCPFGCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKL 104 (332)
T ss_dssp CCCCSSCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTC
T ss_pred CCCCCCCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCC
Confidence 3565555688999999754422 1235788889988888777778888888888888888888777777777 888
Q ss_pred cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchh-hhhcccCCceeeccc-----------------------
Q 007860 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSV----------------------- 529 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~~~~~L~~l~Lsl----------------------- 529 (587)
++|+|++|+++ .+|..+. ++|++|++++|++.+ +|.. +..+. +|+.|+++.
T Consensus 105 ~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l 179 (332)
T 2ft3_A 105 QKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLR-NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRI 179 (332)
T ss_dssp CEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCS-SCCEEECCSCCCBGGGSCTTSSCSCCCSCCBC
T ss_pred CEEECCCCcCC-ccCcccc--ccCCEEECCCCccCc-cCHhHhCCCc-cCCEEECCCCccccCCCCcccccCCccCEEEC
Confidence 88888888887 6666554 566777777776663 4433 33332 455555541
Q ss_pred -------------cccceEECCCCccccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCC
Q 007860 530 -------------VYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 530 -------------~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
.+|+.|+|++|++++..| +.|+.|++++|+| ..+++|+.|+|++|+|+.+|.
T Consensus 180 ~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~ 258 (332)
T 2ft3_A 180 SEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPA 258 (332)
T ss_dssp CSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCT
T ss_pred cCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecCh
Confidence 244555555555543221 2455555666654 345566677777777766665
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=1.4e-16 Score=172.54 Aligned_cols=157 Identities=13% Similarity=0.118 Sum_probs=76.8
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|+|++|.+.+..+..+..+++|+.|+|++|.+++..+..+.. ++|+.|+|++|++.+..+..+..+++|+.|+++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCC
Confidence 3444555555554444444455555555555555554322223333 445555555555444444444444555555555
Q ss_pred CCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc---
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--- 560 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--- 560 (587)
+|++.+.+|....... +|+.|+|+ +.+|+.|+|++|++++..+ +.|+.|+|++|+|
T Consensus 209 ~~~~~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 287 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGL-NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVV 287 (477)
T ss_dssp CCTTCCEECTTTTTTC-CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEE
T ss_pred CCccccccCcccccCc-cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceE
Confidence 4444444444433332 34444443 3345556666665553221 2455555666554
Q ss_pred -----CCCCCCcEEEccCCCCCCCCCC
Q 007860 561 -----QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 561 -----~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
..+++|+.|+|++|+|+++|..
T Consensus 288 ~~~~~~~l~~L~~L~L~~N~l~~~~~~ 314 (477)
T 2id5_A 288 EPYAFRGLNYLRVLNVSGNQLTTLEES 314 (477)
T ss_dssp CTTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred CHHHhcCcccCCEEECCCCcCceeCHh
Confidence 3455666666666666666543
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=167.78 Aligned_cols=127 Identities=17% Similarity=0.216 Sum_probs=80.1
Q ss_pred CCCCCCCcC--ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CC
Q 007860 401 PCAPTNWDA--WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QS 472 (587)
Q Consensus 401 pc~~~~~~~--~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~ 472 (587)
.|...|.|. |..+.|...... ....++.|+|++|.+++..+..|.++++|++|+|++|.+++..|..+.. ++
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~ 81 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81 (477)
T ss_dssp CCSTTCEEETTTTEEECCSCCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred cccCCCeECCCCCEEEeCCCCcCcCCCCCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCcc
Confidence 355555563 567788654321 2235677777777777766777777777777777777777666666666 77
Q ss_pred ccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860 473 LVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 473 L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
|++|+|++|++++..+..+..+++|++|+|++|++.+..|..+..+. +|+.|+|+
T Consensus 82 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~ 136 (477)
T 2id5_A 82 LRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVG 136 (477)
T ss_dssp CCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEEC
T ss_pred CCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECC
Confidence 77777777777643334456667777777777766654444444443 35555554
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=1.3e-15 Score=163.38 Aligned_cols=153 Identities=18% Similarity=0.190 Sum_probs=120.2
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc-cccCCCCCCEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD-SLTSSSKLQLV 500 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~-~l~~l~~L~~L 500 (587)
+..|+.|+|++|.++...+..+..+++|+.|+|++|.+.+..+..+.. ++|++|+|++|+..+.+|. .+..+++|+.|
T Consensus 111 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L 190 (440)
T 3zyj_A 111 LANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190 (440)
T ss_dssp CSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEE
T ss_pred CccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCee
Confidence 456888888888888666667888888888888888888555556666 8888888888544445554 68889999999
Q ss_pred EccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY 560 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i 560 (587)
+|++|+++ .+|. +..+. +|+.|+|+ +.+|+.|+|++|++++..+ ++|+.|+|++|+|
T Consensus 191 ~L~~n~l~-~~~~-~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 267 (440)
T 3zyj_A 191 NLAMCNLR-EIPN-LTPLI-KLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL 267 (440)
T ss_dssp ECTTSCCS-SCCC-CTTCS-SCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred cCCCCcCc-cccc-cCCCc-ccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence 99999998 5774 55554 69999988 5689999999999986433 5688899999987
Q ss_pred --------CCCCCCcEEEccCCCCCC
Q 007860 561 --------QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 561 --------~~l~~L~~L~Ls~N~l~~ 578 (587)
..+.+|+.|+|++|.+..
T Consensus 268 ~~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 268 TLLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred CccChhHhccccCCCEEEcCCCCccC
Confidence 457889999999998753
No 32
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.65 E-value=1.8e-16 Score=162.12 Aligned_cols=85 Identities=21% Similarity=0.187 Sum_probs=59.5
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCC-----CCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc--CCccc--c
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--IPDSL--T 492 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~--iP~~l--~ 492 (587)
++.|+.|+|++|.+++. |..+..+ ++|++|+|++|++.+..|..++. ++|++|+|++|++.|. +|..+ +
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 45577777777777766 6666665 77777777777777666667776 7777777777777654 33344 6
Q ss_pred CCCCCCEEEccCCcCc
Q 007860 493 SSSKLQLVLLNNNLLE 508 (587)
Q Consensus 493 ~l~~L~~L~Ls~N~l~ 508 (587)
.+++|+.|+|++|+++
T Consensus 199 ~l~~L~~L~L~~N~l~ 214 (312)
T 1wwl_A 199 KFPTLQVLALRNAGME 214 (312)
T ss_dssp SCTTCCEEECTTSCCC
T ss_pred cCCCCCEEECCCCcCc
Confidence 7777777777777776
No 33
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.64 E-value=4.6e-16 Score=173.40 Aligned_cols=190 Identities=17% Similarity=0.147 Sum_probs=104.4
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCch-HHHHHHHHHHHhcCCCCCCCCC-CCCCCC--------
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVP-EQVIAMRALKESLRVPDRMGWN-GDPCAP-------- 404 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p-~~~~aL~~lk~~~~~~~~~~w~-g~pc~~-------- 404 (587)
.++.+++++|+++ .+|+.... +..++.+.+..+.+..++ ..+..+..++......+..... ...+..
T Consensus 279 ~L~~L~l~~n~l~-~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 355 (606)
T 3t6q_A 279 GLQELDLTATHLS-ELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355 (606)
T ss_dssp TCSEEECTTSCCS-CCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEE
T ss_pred CCCEEeccCCccC-CCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEE
Confidence 4666777777766 66665544 556666666666655442 2333333333322111100000 000000
Q ss_pred -CCCcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCC
Q 007860 405 -TNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDN 481 (587)
Q Consensus 405 -~~~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N 481 (587)
-..+...++.|.+.....++.|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|.. +.. ++|++|++++|
T Consensus 356 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 435 (606)
T 3t6q_A 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435 (606)
T ss_dssp ECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTC
T ss_pred ECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCC
Confidence 000122333332333344456777777777777777777777777777777777777665554 455 77777777777
Q ss_pred cCCccCCccccCCCCCCEEEccCCcCcccC---chhhhhcccCCceeecc
Q 007860 482 QFTGSIPDSLTSSSKLQLVLLNNNLLEGRV---PEELYSIGVHGGAFDLS 528 (587)
Q Consensus 482 ~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~i---p~~l~~~~~~L~~l~Ls 528 (587)
++++..|..++.+++|+.|++++|++.+.. +..+..+. +|+.|+++
T Consensus 436 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~-~L~~L~Ls 484 (606)
T 3t6q_A 436 LLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLG-RLEILVLS 484 (606)
T ss_dssp CCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCT-TCCEEECT
T ss_pred ccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCC-CccEEECC
Confidence 777666777777777777777777776421 13344433 35555544
No 34
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.64 E-value=2.6e-16 Score=163.60 Aligned_cols=171 Identities=17% Similarity=0.193 Sum_probs=139.5
Q ss_pred cCccceeecCCC--C-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860 408 DAWEGITCHPNK--D-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (587)
Q Consensus 408 ~~~~gv~c~~~~--~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls 479 (587)
|.|.++ |.... . .....++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+.. ++|++|+|+
T Consensus 30 C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 30 CDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp ECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 778776 54322 1 12346899999999999877779999999999999999999877888888 999999999
Q ss_pred CCcCCccCCc-cccCCCCCCEEEccCCcCcccCch--hhhhcccCCceeecc---------------ccccceEECCCCc
Q 007860 480 DNQFTGSIPD-SLTSSSKLQLVLLNNNLLEGRVPE--ELYSIGVHGGAFDLS---------------VVYICCIRRGRND 541 (587)
Q Consensus 480 ~N~l~g~iP~-~l~~l~~L~~L~Ls~N~l~g~ip~--~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~ 541 (587)
+|++++ +|. .++.+++|++|++++|++. .+|. .+..+. +|+.|+++ +.+|++|++++|+
T Consensus 109 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 109 YNYLSN-LSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLT-KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp SSCCSS-CCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred CCcCCc-CCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCC-CCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 999995 555 4899999999999999998 5776 455554 68888887 4578899999999
Q ss_pred cccccc------ccccccccccccc--------CCCCCCcEEEccCCCCCCCCCC
Q 007860 542 YDFGLP------QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 542 l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
+++..| ++|+.|++++|++ ..+++|+.|+|++|++++++..
T Consensus 186 l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 240 (353)
T 2z80_A 186 LQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFS 240 (353)
T ss_dssp CCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC
T ss_pred cCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccc
Confidence 986545 4577788999987 3478999999999999987643
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.64 E-value=2.9e-16 Score=173.61 Aligned_cols=128 Identities=18% Similarity=0.165 Sum_probs=75.3
Q ss_pred cCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc--cCCccccCCCCCCEEEccCCcCcccCchhhhhcccC
Q 007860 445 SLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG--SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVH 521 (587)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g--~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~ 521 (587)
..+++|+.|++++|.+++.+|..+.. ++|+.|+|++|++++ .+|..++.+++|+.|++++|++.+.+|...+..
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~--- 426 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW--- 426 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC---
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC---
Confidence 34455555555555555545555544 555555555555553 223344555555555555555554344332221
Q ss_pred CceeeccccccceEECCCCccccccc----ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCC
Q 007860 522 GGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 522 L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
+.+|+.|+|++|++++.+| +.|+.|++++|+| ..+++|+.|+|++|+|+.+|..
T Consensus 427 -------l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 491 (562)
T 3a79_B 427 -------AESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDG 491 (562)
T ss_dssp -------CTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTT
T ss_pred -------cccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHH
Confidence 3456777777887766443 5677788888876 3456788888888888888875
No 36
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.64 E-value=2.5e-16 Score=172.27 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=80.1
Q ss_pred CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcc--cCchhhhhcccCCceeecc---------------ccccc
Q 007860 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEG--RVPEELYSIGVHGGAFDLS---------------VVYIC 533 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g--~ip~~l~~~~~~L~~l~Ls---------------l~~L~ 533 (587)
++|++|++++|++++.+|..++.+++|+.|++++|++.+ .+|..+..+. +|+.|+++ +.+|+
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls~N~l~~~l~~~~~~~l~~L~ 402 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDISQNSVSYDEKKGDCSWTKSLL 402 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECCSSCCBCCGGGCSCCCCTTCC
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECCCCcCCcccccchhccCccCC
Confidence 677777777777777677777777777777777777764 3445555554 47777666 34677
Q ss_pred eEECCCCccccccc----ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCC
Q 007860 534 CIRRGRNDYDFGLP----QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 534 ~L~L~~N~l~~~~p----~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
.|+|++|++++.+| +.|+.|++++|+| ..+++|+.|+|++|+|+.+|..
T Consensus 403 ~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~ 462 (520)
T 2z7x_B 403 SLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDG 462 (520)
T ss_dssp EEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTT
T ss_pred EEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHH
Confidence 88888888866444 5678888888876 3566788888888888888875
No 37
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.64 E-value=1.7e-15 Score=152.48 Aligned_cols=151 Identities=21% Similarity=0.207 Sum_probs=90.8
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCC-CCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
|+.|+|++|.+++..|..+..+++|++|+|++|. +....|..+.. ++|++|++++|++++..|..+..+++|+.|+++
T Consensus 58 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 137 (285)
T 1ozn_A 58 LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ 137 (285)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC
Confidence 4555555555555555555555555555555554 44333444444 555555555555554445555555555555555
Q ss_pred CCcCcccCchh-hhhcccCCceeecc--------------ccccceEECCCCccccccc------ccccccccccccc--
Q 007860 504 NNLLEGRVPEE-LYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY-- 560 (587)
Q Consensus 504 ~N~l~g~ip~~-l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i-- 560 (587)
+|++.+ ++.. +..+. +|+.|+|+ +.+|+.|+|++|++++..| +.|+.|++++|+|
T Consensus 138 ~n~l~~-~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 215 (285)
T 1ozn_A 138 DNALQA-LPDDTFRDLG-NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA 215 (285)
T ss_dssp SSCCCC-CCTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcccc-cCHhHhccCC-CccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc
Confidence 555553 3322 33332 35555554 4567888888888876544 4677888999876
Q ss_pred ------CCCCCCcEEEccCCCCCC
Q 007860 561 ------QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 561 ------~~l~~L~~L~Ls~N~l~~ 578 (587)
..+++|+.|+|++|++..
T Consensus 216 ~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 216 LPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CCHHHcccCcccCEEeccCCCccC
Confidence 567899999999998864
No 38
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.64 E-value=6.6e-16 Score=151.39 Aligned_cols=178 Identities=15% Similarity=0.205 Sum_probs=138.7
Q ss_pred CCCCCCcCc-ccee--ecCCCC--CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCC-CCCCCCCCCCC-CCcc
Q 007860 402 CAPTNWDAW-EGIT--CHPNKD--ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-QSLV 474 (587)
Q Consensus 402 c~~~~~~~~-~gv~--c~~~~~--~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~-~~L~ 474 (587)
|...|.|.+ ..+. |..-.. .....++.|+|++|++++..+..+..+++|+.|++++|+ +++..+..+.. ++|+
T Consensus 4 cp~~C~C~~~~~~~v~c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~ 83 (239)
T 2xwt_C 4 SSPPCECHQEEDFRVTCKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVT 83 (239)
T ss_dssp CSSSCSEEECSTTEEEECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCC
T ss_pred CCCCCeeCCCCcceeEccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCc
Confidence 444444654 4444 753110 022368899999999998888899999999999999997 87544556777 9999
Q ss_pred EEeccC-CcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCc---eeecc---------------ccccc-e
Q 007860 475 RLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG---AFDLS---------------VVYIC-C 534 (587)
Q Consensus 475 ~L~Ls~-N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~---~l~Ls---------------l~~L~-~ 534 (587)
+|++++ |++++..+..+..+++|+.|++++|++++ +|. +..+. +|+ .|+++ +.+|+ .
T Consensus 84 ~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~ 160 (239)
T 2xwt_C 84 HIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-STDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160 (239)
T ss_dssp EEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC-BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEE
T ss_pred EEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc-ccccccEEECCCCcchhhcCcccccchhcceeE
Confidence 999999 99996666788999999999999999985 886 55554 466 66665 45788 9
Q ss_pred EECCCCccccccc------cccccccccccc-c--------CCC-CCCcEEEccCCCCCCCCCCC
Q 007860 535 IRRGRNDYDFGLP------QDLMSLSAKRNR-Y--------QRQ-KSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 535 L~L~~N~l~~~~p------~~L~~L~l~~N~-i--------~~l-~~L~~L~Ls~N~l~~~P~~~ 583 (587)
|+|++|+++ .+| ..|+.|++++|+ + .++ .+|+.|+|++|+|+++|...
T Consensus 161 L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~ 224 (239)
T 2xwt_C 161 LKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKG 224 (239)
T ss_dssp EECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTT
T ss_pred EEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhH
Confidence 999999987 555 358889999995 6 456 89999999999999999864
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.63 E-value=4.2e-16 Score=171.53 Aligned_cols=171 Identities=16% Similarity=0.136 Sum_probs=141.7
Q ss_pred cCccceeecCCC--C-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEecc
Q 007860 408 DAWEGITCHPNK--D-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLS 479 (587)
Q Consensus 408 ~~~~gv~c~~~~--~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls 479 (587)
|.|.++ |+... . .....++.|+|++|.+++..|..+..+++|++|+|++|++++..|..+.. ++|++|+|+
T Consensus 4 C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls 82 (549)
T 2z81_A 4 CDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82 (549)
T ss_dssp ECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCCce-EECCCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence 567776 65332 1 12346899999999999988999999999999999999999888888988 999999999
Q ss_pred CCcCCccCCccccCCCCCCEEEccCCcCcc-cCchhhhhcccCCceeecc---------------ccccceEECCCCccc
Q 007860 480 DNQFTGSIPDSLTSSSKLQLVLLNNNLLEG-RVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYD 543 (587)
Q Consensus 480 ~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g-~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~ 543 (587)
+|++++..|..++.+++|++|++++|++.+ .+|..+..+. +|+.|+++ +.+|++|+|++|+++
T Consensus 83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~ 161 (549)
T 2z81_A 83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161 (549)
T ss_dssp TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCT-TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccC-CccEEECCCCccccccCHhhhhcccccCeeeccCCccc
Confidence 999997777779999999999999999985 3566677665 58888886 456889999999998
Q ss_pred ccccc------cccccccccccc--------CCCCCCcEEEccCCCCCCCC
Q 007860 544 FGLPQ------DLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 544 ~~~p~------~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P 580 (587)
+..|. .|+.|++++|.+ ..+++|+.|++++|++++++
T Consensus 162 ~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 212 (549)
T 2z81_A 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212 (549)
T ss_dssp EECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCC
T ss_pred ccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCcccccc
Confidence 76663 466677888875 35889999999999999874
No 40
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.63 E-value=1.7e-15 Score=158.10 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=124.0
Q ss_pred CCCCCCCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhc-CCCCCCEEEccCCCCCCCCCCCCCC
Q 007860 397 WNGDPCAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKIS-LLSNLVNLNLSTNSLGGTLPSGLGQ 470 (587)
Q Consensus 397 w~g~pc~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~-~l~~L~~L~Ls~N~l~g~ip~~~~~ 470 (587)
.....|...|.|.+..+.|....... ...++.|+|++|.|++..+..+. .+++|+.|+|++|+|++..|..+..
T Consensus 7 ~~~~~Cp~~C~C~~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~ 86 (361)
T 2xot_A 7 RSVVSCPANCLCASNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP 86 (361)
T ss_dssp CCCTTCCTTCEEETTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT
T ss_pred CcCCCCCCCCEECCCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC
Confidence 34467888888999999998655332 23478899999999988888787 9999999999999999766677888
Q ss_pred -CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccc
Q 007860 471 -QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQD 549 (587)
Q Consensus 471 -~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~ 549 (587)
++|++|+|++|+|++..+..|..+++|+.|+|++|++.+..|..+..+ .+|+.|+|++|+++ .+|..
T Consensus 87 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l-----------~~L~~L~L~~N~l~-~l~~~ 154 (361)
T 2xot_A 87 VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM-----------AQLQKLYLSQNQIS-RFPVE 154 (361)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC-----------TTCCEEECCSSCCC-SCCGG
T ss_pred CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc-----------ccCCEEECCCCcCC-eeCHH
Confidence 999999999999997667779999999999999999996555555543 34677788888887 44432
Q ss_pred cccccccccccCCCCCCcEEEccCCCCCCCC
Q 007860 550 LMSLSAKRNRYQRQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 550 L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P 580 (587)
+- ..+..+.+|+.|+|++|+|+.+|
T Consensus 155 ~~------~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 155 LI------KDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp GT------C----CTTCCEEECCSSCCCCCC
T ss_pred Hh------cCcccCCcCCEEECCCCCCCccC
Confidence 10 00133455556666666655555
No 41
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=3.7e-16 Score=159.71 Aligned_cols=155 Identities=15% Similarity=0.127 Sum_probs=102.6
Q ss_pred eEEEEEcCCCCCcccCchhh--cCCCCCCEEEccCCCCCCCCCCCCCC------CCccEEeccCCcCCccCCccccCCCC
Q 007860 425 VISQIDLGSQGLKGYISDKI--SLLSNLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLTSSSK 496 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~~~~~------~~L~~L~Ls~N~l~g~iP~~l~~l~~ 496 (587)
.|+.|+|++|.+++.+|..+ ..+++|++|+|++|++++. |..+.. ++|++|+|++|++++..|..++.+++
T Consensus 96 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~ 174 (312)
T 1wwl_A 96 GLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPA 174 (312)
T ss_dssp CCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSS
T ss_pred CccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCC
Confidence 46677777777777777765 7777777777777777755 554432 56777777777777666677777777
Q ss_pred CCEEEccCCcCccc--Cchhh--hhcccCCceeecc-----------------ccccceEECCCCccccccc-------c
Q 007860 497 LQLVLLNNNLLEGR--VPEEL--YSIGVHGGAFDLS-----------------VVYICCIRRGRNDYDFGLP-------Q 548 (587)
Q Consensus 497 L~~L~Ls~N~l~g~--ip~~l--~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~l~~~~p-------~ 548 (587)
|+.|+|++|++.|. +|..+ ..+. +|+.|+|+ +.+|+.|+|++|++++..| +
T Consensus 175 L~~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 253 (312)
T 1wwl_A 175 LSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPS 253 (312)
T ss_dssp CCEEECCSCTTCHHHHHHHHSCTTSCT-TCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCT
T ss_pred CCEEECCCCCcCcchHHHHHHHhccCC-CCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcC
Confidence 77777777777654 23333 3333 56777666 2467777777777765332 4
Q ss_pred ccccccccccccCCC-----CCCcEEEccCCCCCCCCC
Q 007860 549 DLMSLSAKRNRYQRQ-----KSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 549 ~L~~L~l~~N~i~~l-----~~L~~L~Ls~N~l~~~P~ 581 (587)
+|+.|++++|+|+.. ++|+.|+|++|+|+++|.
T Consensus 254 ~L~~L~Ls~N~l~~ip~~~~~~L~~L~Ls~N~l~~~p~ 291 (312)
T 1wwl_A 254 QLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPS 291 (312)
T ss_dssp TCCEEECTTSCCSSCCSSCCSEEEEEECCSSCCCSCCC
T ss_pred CCCEEECCCCccChhhhhccCCceEEECCCCCCCCChh
Confidence 566677777776332 356777777777777765
No 42
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=5.6e-16 Score=158.19 Aligned_cols=153 Identities=20% Similarity=0.165 Sum_probs=99.2
Q ss_pred ceeEEEEEcCCCCCcccCc----hhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc--C--CccccC
Q 007860 423 AVVISQIDLGSQGLKGYIS----DKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS--I--PDSLTS 493 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p----~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~--i--P~~l~~ 493 (587)
+..|+.|+|++|.+++..+ ..+..+++|+.|+|++|.+.+..|..+.. ++|++|+|++|++.+. + +..++.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 4568889999999887655 44567889999999999998777777877 8999999999988652 2 233467
Q ss_pred CCCCCEEEccCCcCcccCchh---hhhcccCCceeecc--------------c---cccceEECCCCccccccc----cc
Q 007860 494 SSKLQLVLLNNNLLEGRVPEE---LYSIGVHGGAFDLS--------------V---VYICCIRRGRNDYDFGLP----QD 549 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~---l~~~~~~L~~l~Ls--------------l---~~L~~L~L~~N~l~~~~p----~~ 549 (587)
+++|++|+|++|+++ .++.. +.....+|+.|+|+ + .+|++|+|++|+++ .+| +.
T Consensus 196 l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~ 273 (310)
T 4glp_A 196 FPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLPAK 273 (310)
T ss_dssp SCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCCSC
T ss_pred CCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhcCC
Confidence 888999999999987 34442 22222345666555 1 24555555555554 333 34
Q ss_pred cccccccccccC------CCCCCcEEEccCCCCC
Q 007860 550 LMSLSAKRNRYQ------RQKSLMLLEMESQHAK 577 (587)
Q Consensus 550 L~~L~l~~N~i~------~l~~L~~L~Ls~N~l~ 577 (587)
|+.|+|++|+|. .+++|+.|+|++|+|+
T Consensus 274 L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 274 LRVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CSCEECCSCCCCSCCCTTSCCCCSCEECSSTTTS
T ss_pred CCEEECCCCcCCCCchhhhCCCccEEECcCCCCC
Confidence 455555555542 2344555555555554
No 43
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.62 E-value=3.3e-15 Score=151.17 Aligned_cols=147 Identities=22% Similarity=0.189 Sum_probs=113.3
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.|+|++|.+++..+..+..+++|+.|+|++|.+++ ++.. .. ++|++|+|++|+++ .+|..+..+++|+.|+|
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~-~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l 107 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDV 107 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EECC-SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccCC-CCCCcCCEEECCCCcCC-cCchhhccCCCCCEEEC
Confidence 468899999999998888999999999999999999994 4544 55 99999999999999 88999999999999999
Q ss_pred cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc--------CCCCCCcE
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLML 568 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~~ 568 (587)
++|++++..|..+..+. +|+.|+|++|++++..+ +.|+.|+|++|+| ..+++|+.
T Consensus 108 ~~N~l~~l~~~~~~~l~-----------~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~ 176 (290)
T 1p9a_G 108 SFNRLTSLPLGALRGLG-----------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDT 176 (290)
T ss_dssp CSSCCCCCCSSTTTTCT-----------TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCE
T ss_pred CCCcCcccCHHHHcCCC-----------CCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCE
Confidence 99999953334455443 35555666666653211 3466666777765 34667888
Q ss_pred EEccCCCCCCCCCCCC
Q 007860 569 LEMESQHAKGLPTLPL 584 (587)
Q Consensus 569 L~Ls~N~l~~~P~~~~ 584 (587)
|+|++|+|+.+|....
T Consensus 177 L~L~~N~l~~ip~~~~ 192 (290)
T 1p9a_G 177 LLLQENSLYTIPKGFF 192 (290)
T ss_dssp EECCSSCCCCCCTTTT
T ss_pred EECCCCcCCccChhhc
Confidence 8888888888776543
No 44
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=1.4e-15 Score=144.16 Aligned_cols=135 Identities=17% Similarity=0.253 Sum_probs=114.0
Q ss_pred CCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCch-hhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc
Q 007860 402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISD-KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV 474 (587)
Q Consensus 402 c~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~-~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~ 474 (587)
|...|.|.|..+.|....... ...++.|+|++|.+++..+. .+..+++|+.|+|++|.+++..|..+.. ++|+
T Consensus 2 CP~~C~C~~~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 81 (192)
T 1w8a_A 2 CPAMCHCEGTTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ 81 (192)
T ss_dssp CCTTSEEETTEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred cCCCCEECCCEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence 666667999999998665322 23688999999999977665 4899999999999999999888999998 9999
Q ss_pred EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc
Q 007860 475 RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP 547 (587)
Q Consensus 475 ~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p 547 (587)
+|+|++|++++..|..+..+++|+.|+|++|++++..|..+..+ .+|+.|+|++|++++..+
T Consensus 82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL-----------NSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTC-----------TTCCEEECTTCCBCCSGG
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcC-----------CCCCEEEeCCCCccCcCc
Confidence 99999999998888889999999999999999998777766554 357788888999987544
No 45
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.61 E-value=3.9e-16 Score=170.71 Aligned_cols=90 Identities=19% Similarity=0.217 Sum_probs=71.8
Q ss_pred cCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------------ccccceEECCCCccccccc-------c
Q 007860 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------------VVYICCIRRGRNDYDFGLP-------Q 548 (587)
Q Consensus 492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------------l~~L~~L~L~~N~l~~~~p-------~ 548 (587)
..+++|++|++++|++++.+|..+..+. +|+.|+++ +.+|+.|+|++|++++.+| +
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~ 399 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLT-ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK 399 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCS-SCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred hhCCcccEEEeECCccChhhhhhhccCC-CCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence 5678888999999999877887777766 58888887 5678889999999886455 4
Q ss_pred ccccccccccccC-----CC-CCCcEEEccCCCCCCCCCC
Q 007860 549 DLMSLSAKRNRYQ-----RQ-KSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 549 ~L~~L~l~~N~i~-----~l-~~L~~L~Ls~N~l~~~P~~ 582 (587)
.|+.|++++|++. .+ ++|+.|+|++|+|+.+|..
T Consensus 400 ~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~ 439 (520)
T 2z7x_B 400 SLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQ 439 (520)
T ss_dssp TCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGG
T ss_pred cCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchh
Confidence 6788889999883 23 6899999999999988864
No 46
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.61 E-value=1.5e-15 Score=167.09 Aligned_cols=109 Identities=24% Similarity=0.259 Sum_probs=63.4
Q ss_pred CCccEEeccCCcCCccCCc---cccCCCCCCEEEccCCcCcccCc---hhhhhcccCCceeecc-------------ccc
Q 007860 471 QSLVRLDLSDNQFTGSIPD---SLTSSSKLQLVLLNNNLLEGRVP---EELYSIGVHGGAFDLS-------------VVY 531 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~---~l~~l~~L~~L~Ls~N~l~g~ip---~~l~~~~~~L~~l~Ls-------------l~~ 531 (587)
++|++|++++|++++.+|. .++.+++|+.|+|++|++++ ++ ..+..+. +|+.|+++ +.+
T Consensus 334 ~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~~~~l~-~L~~L~Ls~N~l~~lp~~~~~~~~ 411 (549)
T 2z81_A 334 KSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS-MQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWPEK 411 (549)
T ss_dssp TTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC-HHHHHHHGGGCT-TCCEEECTTCCCCCCCSCCCCCTT
T ss_pred ccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc-cccchhhhhcCC-CCCEEECCCCCCccCChhhccccc
Confidence 5566666666666655432 24555666666666666653 33 1233333 46666665 345
Q ss_pred cceEECCCCcccc---ccccccccccccccccC----CCCCCcEEEccCCCCCCCCC
Q 007860 532 ICCIRRGRNDYDF---GLPQDLMSLSAKRNRYQ----RQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 532 L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i~----~l~~L~~L~Ls~N~l~~~P~ 581 (587)
|+.|+|++|+++. .+|+.|+.|++++|+|. .+++|++|+|++|+|+.+|.
T Consensus 412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~ 468 (549)
T 2z81_A 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD 468 (549)
T ss_dssp CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC
T ss_pred ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC
Confidence 6666666666642 23456666666666663 56667777777777776665
No 47
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.60 E-value=4.6e-15 Score=148.58 Aligned_cols=150 Identities=18% Similarity=0.210 Sum_probs=92.6
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc-cCCccccCCCCCCEEE
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQLVL 501 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~L~ 501 (587)
+.|+.|+|++|.+++..+..+.++++|+.|++++|.+.+..+..+.. ++|++|++++|++++ .+|..++.+++|+.|+
T Consensus 76 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~ 155 (276)
T 2z62_A 76 SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD 155 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred cCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEE
Confidence 44566666666666555556666666666666666666444444555 666666666666654 2466666666666666
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc-----ccccccccccccc--------CCCCCCcE
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY--------QRQKSLML 568 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i--------~~l~~L~~ 568 (587)
|++|++++..+..+..+. .|+.+.+ .|+|++|++++..+ ..|+.|++++|+| ..+.+|+.
T Consensus 156 Ls~N~l~~~~~~~~~~l~-~L~~l~l------~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 156 LSSNKIQSIYCTDLRVLH-QMPLLNL------SLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp CCSSCCCEECGGGGHHHH-TCTTCCE------EEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCCCCCcCCHHHhhhhh-hccccce------eeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccE
Confidence 666666543333444333 1221111 57888888874322 2578888888876 56788999
Q ss_pred EEccCCCCCCCC
Q 007860 569 LEMESQHAKGLP 580 (587)
Q Consensus 569 L~Ls~N~l~~~P 580 (587)
|+|++|++++-.
T Consensus 229 L~l~~N~~~c~c 240 (276)
T 2z62_A 229 IWLHTNPWDCSC 240 (276)
T ss_dssp EECCSSCBCCCT
T ss_pred EEccCCcccccC
Confidence 999999998653
No 48
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.60 E-value=4.7e-15 Score=146.56 Aligned_cols=154 Identities=18% Similarity=0.249 Sum_probs=125.1
Q ss_pred cCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc
Q 007860 408 DAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486 (587)
Q Consensus 408 ~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~ 486 (587)
+.|.|..|... .+.++++++.++ .+|..+. ++|+.|+|++|.+++..+..+.. ++|++|+|++|++++.
T Consensus 5 p~~~gC~C~~~-------~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 74 (251)
T 3m19_A 5 ETVTGCTCNEG-------KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTL 74 (251)
T ss_dssp HHHHSSEEEGG-------GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred CCCCceEcCCC-------CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCcc
Confidence 57888889532 346999999998 5676554 68999999999999888878888 9999999999999988
Q ss_pred CCccccCCCCCCEEEccCCcCcccCchh-hhhcccCCceeeccccccceEECCCCcccccc------ccccccccccccc
Q 007860 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGL------PQDLMSLSAKRNR 559 (587)
Q Consensus 487 iP~~l~~l~~L~~L~Ls~N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~------p~~L~~L~l~~N~ 559 (587)
.|..+..+++|+.|+|++|++++ +|.. +..+ .+|+.|+|++|++++.. .+.|+.|+|++|+
T Consensus 75 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 142 (251)
T 3m19_A 75 SAGVFDDLTELGTLGLANNQLAS-LPLGVFDHL-----------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ 142 (251)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTC-----------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CHhHhccCCcCCEEECCCCcccc-cChhHhccc-----------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc
Confidence 88889999999999999999995 5543 3333 34667777788877422 2468888999998
Q ss_pred c--------CCCCCCcEEEccCCCCCCCCCCC
Q 007860 560 Y--------QRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 560 i--------~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
| ..+++|+.|+|++|+|+++|...
T Consensus 143 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 174 (251)
T 3m19_A 143 LQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174 (251)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred CCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence 7 46788999999999999999754
No 49
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.59 E-value=8.7e-16 Score=169.82 Aligned_cols=92 Identities=11% Similarity=0.131 Sum_probs=64.2
Q ss_pred cCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------------ccccceEECCCCccccccc-------c
Q 007860 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------------VVYICCIRRGRNDYDFGLP-------Q 548 (587)
Q Consensus 492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------------l~~L~~L~L~~N~l~~~~p-------~ 548 (587)
+.+++|+.|++++|++++.+|..+..+. +|+.|+|+ +.+|+.|+|++|++++.+| +
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~ 428 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLK-RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCS-SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred cCCCCceEEECCCCccccchhhhhcccC-CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence 3445555555555555554555554443 35555554 4568889999999986455 5
Q ss_pred ccccccccccccC-----CC-CCCcEEEccCCCCCCCCCCCC
Q 007860 549 DLMSLSAKRNRYQ-----RQ-KSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 549 ~L~~L~l~~N~i~-----~l-~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
.|+.|++++|+|. .+ ++|+.|+|++|+|+.+|....
T Consensus 429 ~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~ 470 (562)
T 3a79_B 429 SILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT 470 (562)
T ss_dssp TCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTT
T ss_pred cCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhc
Confidence 6888899999983 34 689999999999999997543
No 50
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=2.6e-15 Score=156.07 Aligned_cols=180 Identities=14% Similarity=0.174 Sum_probs=137.1
Q ss_pred CCCC-CCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCC-CC-CCc
Q 007860 402 CAPT-NWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSL 473 (587)
Q Consensus 402 c~~~-~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~-~~L 473 (587)
|.+. |.|.+..+.|...... .+..++.|+|++|+|+...+..|.+|++|++|+|++|++.+.+|... .. +++
T Consensus 2 Cp~~~C~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 2 CHHRICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp CCCSSSEEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred CCCCccEeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 5543 6689999999865422 23468999999999996666789999999999999999987787654 45 666
Q ss_pred c-EEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCch-hhhhcccCCceeecc----------------ccccceE
Q 007860 474 V-RLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDLS----------------VVYICCI 535 (587)
Q Consensus 474 ~-~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~~~L~~l~Ls----------------l~~L~~L 535 (587)
+ .+.++.|+++...|..+..+++|+.|++++|++.+ +|. .+.... .+..+++. ...++.|
T Consensus 82 ~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~-~~~~~~~~~~-~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L 159 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH-LPDVHKIHSL-QKVLLDIQDNINIHTIERNSFVGLSFESVIL 159 (350)
T ss_dssp CEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSS-CCCCTTCCBS-SCEEEEEESCTTCCEECTTSSTTSBSSCEEE
T ss_pred hhhhcccCCcccccCchhhhhcccccccccccccccc-CCchhhcccc-hhhhhhhccccccccccccchhhcchhhhhh
Confidence 5 56778899997778889999999999999999984 554 333322 35555553 2357889
Q ss_pred ECCCCcccccccc------ccccccccc-ccc--------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860 536 RRGRNDYDFGLPQ------DLMSLSAKR-NRY--------QRQKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 536 ~L~~N~l~~~~p~------~L~~L~l~~-N~i--------~~l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
+|++|+++ .+|. .+..|++++ |++ .++++|+.|+|++|+|+.+|...+
T Consensus 160 ~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~ 222 (350)
T 4ay9_X 160 WLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGL 222 (350)
T ss_dssp ECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSC
T ss_pred cccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhh
Confidence 99999998 4553 466677764 544 567889999999999999998654
No 51
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=1.1e-14 Score=149.60 Aligned_cols=155 Identities=14% Similarity=0.214 Sum_probs=114.4
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCC--ccCCccccCCCCCCE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFT--GSIPDSLTSSSKLQL 499 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~--g~iP~~l~~l~~L~~ 499 (587)
++.|+.|+|++|.++ .+|..+. ++|+.|++++|.+++..+..+.. ++|++|++++|++. +..+..+..+++|+.
T Consensus 99 l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 99 LVKLERLYLSKNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSY 175 (330)
T ss_dssp CTTCCEEECCSSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCE
T ss_pred CCCCCEEECCCCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCE
Confidence 345666666666665 3444333 56666666666666444444566 78888888888875 366777888888888
Q ss_pred EEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------cccccccccccc
Q 007860 500 VLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNR 559 (587)
Q Consensus 500 L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~ 559 (587)
|++++|.+. .+|..+. .+|+.|+++ +.+|+.|+|++|++++..+ +.|+.|++++|+
T Consensus 176 L~l~~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~ 251 (330)
T 1xku_A 176 IRIADTNIT-TIPQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK 251 (330)
T ss_dssp EECCSSCCC-SCCSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC
T ss_pred EECCCCccc-cCCcccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc
Confidence 888888887 5776554 468888887 5689999999999985433 468888999998
Q ss_pred c-------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860 560 Y-------QRQKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 560 i-------~~l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
| ..+++|+.|+|++|+|+++|...+
T Consensus 252 l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f 283 (330)
T 1xku_A 252 LVKVPGGLADHKYIQVVYLHNNNISAIGSNDF 283 (330)
T ss_dssp CSSCCTTTTTCSSCCEEECCSSCCCCCCTTSS
T ss_pred CccCChhhccCCCcCEEECCCCcCCccChhhc
Confidence 7 456789999999999999997654
No 52
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=9.1e-15 Score=162.86 Aligned_cols=118 Identities=14% Similarity=0.037 Sum_probs=82.5
Q ss_pred ccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcC
Q 007860 410 WEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQF 483 (587)
Q Consensus 410 ~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l 483 (587)
+..+.|...... ....++.|+|++|.+++..|..|.++++|++|+|++|.+.+..|..+.. ++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 345666544321 2235778888888888777778888888888888888888777777777 8888888888888
Q ss_pred CccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860 484 TGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 484 ~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
++..|..++.+++|++|++++|++++..|..+..+. +|+.|+++
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~-~L~~L~L~ 137 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQK-TLESLYLG 137 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT-TCCEEECC
T ss_pred cccChhhhcccccccEeeccccCcccCCcchhccCC-cccEEECC
Confidence 777777777777777777777777743344444443 35666555
No 53
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.58 E-value=8.8e-15 Score=150.68 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=101.2
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
.|+.|+|++|.+++..|..+..+++|++|+|++|.++ .+|..+. ++|++|++++|++++..+..+..+++|+.|++++
T Consensus 79 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 156 (332)
T 2ft3_A 79 HLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGG 156 (332)
T ss_dssp TCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCS
T ss_pred CCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCC
Confidence 3555666666666555666666666666666666665 4554433 5555555555555533333455555555555555
Q ss_pred CcCc--c----------------------cCchhhhhcccCCceeecc--------------ccccceEECCCCcccccc
Q 007860 505 NLLE--G----------------------RVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGL 546 (587)
Q Consensus 505 N~l~--g----------------------~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~ 546 (587)
|.+. + .+|..+. .+|+.|+++ +.+|+.|+|++|++++..
T Consensus 157 n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 233 (332)
T 2ft3_A 157 NPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIE 233 (332)
T ss_dssp CCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCC
T ss_pred CccccCCCCcccccCCccCEEECcCCCCCccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCC
Confidence 5553 1 2343322 357777776 568999999999998643
Q ss_pred c------ccccccccccccc-------CCCCCCcEEEccCCCCCCCCCCCC
Q 007860 547 P------QDLMSLSAKRNRY-------QRQKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 547 p------~~L~~L~l~~N~i-------~~l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
+ +.|+.|++++|+| ..+++|+.|+|++|+|+++|...+
T Consensus 234 ~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~ 284 (332)
T 2ft3_A 234 NGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDF 284 (332)
T ss_dssp TTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSS
T ss_pred hhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHc
Confidence 3 4688889999987 466789999999999999987644
No 54
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=1.4e-14 Score=152.61 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=129.5
Q ss_pred CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCC
Q 007860 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (587)
Q Consensus 421 ~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 498 (587)
..+..|+.|+|++|.+.+..|..+..+++|++|+|++|.++ .+|.. +.. ++|++|++++|++++..|..++.+++|+
T Consensus 90 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 168 (390)
T 3o6n_A 90 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168 (390)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCC
T ss_pred cCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCC
Confidence 34567899999999999888888999999999999999999 66666 466 9999999999999987788899999999
Q ss_pred EEEccCCcCcccCchhhhhcccCCceeecc---------ccccceEECCCCcccc---cccccccccccccccc------
Q 007860 499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------VVYICCIRRGRNDYDF---GLPQDLMSLSAKRNRY------ 560 (587)
Q Consensus 499 ~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------l~~L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i------ 560 (587)
.|++++|++++ ++ +..+. .|+.++++ ...|+.|++++|++.. ..+.+|+.|++++|++
T Consensus 169 ~L~l~~n~l~~-~~--~~~l~-~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l 244 (390)
T 3o6n_A 169 NLQLSSNRLTH-VD--LSLIP-SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 244 (390)
T ss_dssp EEECCSSCCSB-CC--GGGCT-TCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGG
T ss_pred EEECCCCcCCc-cc--ccccc-ccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHH
Confidence 99999999985 43 33333 57888877 3468889999998863 2346799999999987
Q ss_pred CCCCCCcEEEccCCCCCCCCC
Q 007860 561 QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 561 ~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
..+++|++|+|++|++++++.
T Consensus 245 ~~l~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 245 LNYPGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp GGCTTCSEEECCSSCCCEEES
T ss_pred cCCCCccEEECCCCcCCCcCh
Confidence 567899999999999988743
No 55
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.57 E-value=1.9e-14 Score=151.45 Aligned_cols=133 Identities=15% Similarity=0.154 Sum_probs=87.2
Q ss_pred eeeEeecCCccEEEEEcccc-hhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860 335 HYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~-~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv 413 (587)
.++.+.++++.+. .+|+.. .. +..++.+.+..+.+..+++.. +..++.. . ..+..+ +...++
T Consensus 46 ~l~~l~l~~~~l~-~l~~~~~~~--l~~L~~L~L~~n~i~~~~~~~--~~~l~~L---~-~L~L~~--------n~l~~~ 108 (390)
T 3o6n_A 46 NQKIVTFKNSTMR-KLPAALLDS--FRQVELLNLNDLQIEEIDTYA--FAYAHTI---Q-KLYMGF--------NAIRYL 108 (390)
T ss_dssp CCSEEEEESCEES-EECTHHHHH--CCCCSEEECTTSCCCEECTTT--TTTCTTC---C-EEECCS--------SCCCCC
T ss_pred CceEEEecCCchh-hCChhHhcc--cccCcEEECCCCcccccChhh--ccCCCCc---C-EEECCC--------CCCCcC
Confidence 4556667777766 566543 33 667888888877776665431 1111100 0 001111 111111
Q ss_pred eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc
Q 007860 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486 (587)
Q Consensus 414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~ 486 (587)
. +.....++.|+.|+|++|.++...+..+..+++|++|+|++|.+.+..|..+.. ++|++|++++|++++.
T Consensus 109 ~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 180 (390)
T 3o6n_A 109 P--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180 (390)
T ss_dssp C--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred C--HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence 1 111234567999999999999555555799999999999999999777777888 9999999999999853
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.57 E-value=4.1e-15 Score=151.21 Aligned_cols=156 Identities=17% Similarity=0.189 Sum_probs=132.3
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
+..|+.|+|++|.+. .+|..+..+++|+.|++++|.+++..+ ..+.. ++|++|++++|++++..|..+..+++|+.|
T Consensus 77 ~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 356899999999998 577789999999999999999995544 46667 999999999999998899999999999999
Q ss_pred EccCCcCcc-cCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc------cccccccccccc
Q 007860 501 LLNNNLLEG-RVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP------QDLMSLSAKRNR 559 (587)
Q Consensus 501 ~Ls~N~l~g-~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~ 559 (587)
++++|.+.+ .+|..+..+. +|+.|+++ +.+|+.|+|++|++++..+ +.|+.|++++|+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELR-NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred ECCCCccccccchhHHhhCc-CCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 999999986 4677777665 69999988 5689999999999985322 568899999998
Q ss_pred cC--------CC-CCCcEEEccCCCCCCCC
Q 007860 560 YQ--------RQ-KSLMLLEMESQHAKGLP 580 (587)
Q Consensus 560 i~--------~l-~~L~~L~Ls~N~l~~~P 580 (587)
|. .+ .+|+.|+|++|++++-.
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c 264 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTC 264 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence 83 34 48999999999998653
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=1.7e-14 Score=160.78 Aligned_cols=156 Identities=19% Similarity=0.225 Sum_probs=129.8
Q ss_pred CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCC
Q 007860 421 ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (587)
Q Consensus 421 ~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 498 (587)
..+..|+.|+|++|.+++..|..++.+++|+.|+|++|.++ .+|.. +.. ++|++|+|++|++++..|..++.+++|+
T Consensus 96 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 174 (597)
T 3oja_B 96 AYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174 (597)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC
T ss_pred cCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCc
Confidence 34567899999999999988888999999999999999999 55555 567 9999999999999988888899999999
Q ss_pred EEEccCCcCcccCchhhhhcccCCceeecc---------ccccceEECCCCcccc---cccccccccccccccc------
Q 007860 499 LVLLNNNLLEGRVPEELYSIGVHGGAFDLS---------VVYICCIRRGRNDYDF---GLPQDLMSLSAKRNRY------ 560 (587)
Q Consensus 499 ~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls---------l~~L~~L~L~~N~l~~---~~p~~L~~L~l~~N~i------ 560 (587)
.|+|++|.+.+ ++ +..+. .|+.|+++ ...|+.|++++|.+.. .++.+|..|+|++|.|
T Consensus 175 ~L~L~~N~l~~-~~--~~~l~-~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l 250 (597)
T 3oja_B 175 NLQLSSNRLTH-VD--LSLIP-SLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWL 250 (597)
T ss_dssp EEECTTSCCSB-CC--GGGCT-TCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGG
T ss_pred EEECcCCCCCC-cC--hhhhh-hhhhhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhh
Confidence 99999999985 44 33333 57888777 4467889999998863 3557899999999987
Q ss_pred CCCCCCcEEEccCCCCCCCCC
Q 007860 561 QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 561 ~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
..++.|+.|+|++|+|++++.
T Consensus 251 ~~l~~L~~L~Ls~N~l~~~~~ 271 (597)
T 3oja_B 251 LNYPGLVEVDLSYNELEKIMY 271 (597)
T ss_dssp GGCTTCSEEECCSSCCCEEES
T ss_pred ccCCCCCEEECCCCccCCCCH
Confidence 567899999999999998754
No 58
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=2.1e-14 Score=160.00 Aligned_cols=151 Identities=17% Similarity=0.160 Sum_probs=95.0
Q ss_pred eeeEeecCCccEEEEEcccc-hhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860 335 HYVAKNLSSTELTVKLVPVV-GAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~-~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv 413 (587)
.+..+.++++.+. .+|+.. .. +..++.+.+..+.+..+++.. +..++.. . ..+..+ +...++
T Consensus 52 ~l~~l~l~~~~l~-~lp~~~~~~--l~~L~~L~L~~n~l~~~~~~~--~~~l~~L---~-~L~L~~--------n~l~~~ 114 (597)
T 3oja_B 52 NQKIVTFKNSTMR-KLPAALLDS--FRQVELLNLNDLQIEEIDTYA--FAYAHTI---Q-KLYMGF--------NAIRYL 114 (597)
T ss_dssp CCSEEEESSCEES-EECTHHHHH--CCCCSEEECTTSCCCEECTTT--TTTCTTC---C-EEECCS--------SCCCCC
T ss_pred CceEEEeeCCCCC-CcCHHHHcc--CCCCcEEECCCCCCCCCChHH--hcCCCCC---C-EEECCC--------CcCCCC
Confidence 3455667777766 566543 33 667788888777766655431 1111100 0 001111 111221
Q ss_pred eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc
Q 007860 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (587)
Q Consensus 414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (587)
. +.....++.|+.|+|++|.+++..+..++.+++|+.|+|++|.+++..|..+.. ++|++|+|++|++++. + ++
T Consensus 115 ~--~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~ 189 (597)
T 3oja_B 115 P--PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LS 189 (597)
T ss_dssp C--TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GG
T ss_pred C--HHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hh
Confidence 1 111234567999999999999766666799999999999999999888888988 9999999999999964 3 33
Q ss_pred CCCCCCEEEccCCcC
Q 007860 493 SSSKLQLVLLNNNLL 507 (587)
Q Consensus 493 ~l~~L~~L~Ls~N~l 507 (587)
.+++|+.|++++|.+
T Consensus 190 ~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 190 LIPSLFHANVSYNLL 204 (597)
T ss_dssp GCTTCSEEECCSSCC
T ss_pred hhhhhhhhhcccCcc
Confidence 344444444444333
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.56 E-value=4.2e-15 Score=172.29 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCCcccCc-hhhcCCCCCCEEEccCCCCCCCCCCCCCC---CCccEEeccCCcCCccCCcccc
Q 007860 425 VISQIDLGSQGLKGYIS-DKISLLSNLVNLNLSTNSLGGTLPSGLGQ---QSLVRLDLSDNQFTGSIPDSLT 492 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p-~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~---~~L~~L~Ls~N~l~g~iP~~l~ 492 (587)
.|+.|+|++|.+.+..+ ..+++|++|+.|+|++|.+++..|..+.. ++|+.|+++.|.+.+..|..++
T Consensus 124 ~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~ 195 (844)
T 3j0a_A 124 ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195 (844)
T ss_dssp SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCC
T ss_pred CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchh
Confidence 45555555555554433 34555555555555555555444444332 3444444444444444443333
No 60
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.56 E-value=1.3e-14 Score=164.02 Aligned_cols=84 Identities=18% Similarity=0.244 Sum_probs=39.7
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.++.|+|++|.+++..+..+.++++|+.|+|++|.+++..|..+.. ++|++|+|++|++++..+..++.+++|++|+|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~ 105 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM 105 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECC
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECC
Confidence 3455555555555444444555555555555555555444444444 444444444444442222234444444444444
Q ss_pred CCcCc
Q 007860 504 NNLLE 508 (587)
Q Consensus 504 ~N~l~ 508 (587)
+|++.
T Consensus 106 ~n~l~ 110 (680)
T 1ziw_A 106 SNSIQ 110 (680)
T ss_dssp SSCCC
T ss_pred CCccC
Confidence 44444
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.55 E-value=2.1e-14 Score=154.42 Aligned_cols=212 Identities=14% Similarity=0.104 Sum_probs=134.0
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchH-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPE-QVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~-~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv 413 (587)
.++.+++++|.+....+..... +..++.+.+..+.+..++. .+..+..|+......+ ....+
T Consensus 76 ~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n---------------~l~~~ 138 (452)
T 3zyi_A 76 NTRYLNLMENNIQMIQADTFRH--LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN---------------WLTVI 138 (452)
T ss_dssp TCSEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS---------------CCSBC
T ss_pred CccEEECcCCcCceECHHHcCC--CCCCCEEECCCCccCCcChhhccCcccCCEEECCCC---------------cCCcc
Confidence 4566777777777444444544 6667777776666554432 2222222222111110 00100
Q ss_pred eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccc
Q 007860 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSL 491 (587)
Q Consensus 414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l 491 (587)
. ......++.|+.|+|++|.+....+..+..+++|+.|+|++|+..+.++.. +.. ++|++|+|++|+++ .+| .+
T Consensus 139 ~--~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~ 214 (452)
T 3zyi_A 139 P--SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NL 214 (452)
T ss_dssp C--TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCC-CC
T ss_pred C--hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccc-ccc-cc
Confidence 0 001122346788888888888777778888888888888885544466654 555 88999999999888 455 47
Q ss_pred cCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc-----
Q 007860 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY----- 560 (587)
Q Consensus 492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i----- 560 (587)
..+++|+.|+|++|++.+..|..+..+. +|+.|+|++|++++..| ++|+.|+|++|+|
T Consensus 215 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-----------~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 283 (452)
T 3zyi_A 215 TPLVGLEELEMSGNHFPEIRPGSFHGLS-----------SLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPH 283 (452)
T ss_dssp TTCTTCCEEECTTSCCSEECGGGGTTCT-----------TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccccEEECcCCcCcccCcccccCcc-----------CCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccCh
Confidence 8888899999999988876666666544 35556666666654322 4567777777766
Q ss_pred ---CCCCCCcEEEccCCCCCC
Q 007860 561 ---QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 561 ---~~l~~L~~L~Ls~N~l~~ 578 (587)
..+++|+.|+|++|.+..
T Consensus 284 ~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 284 DLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp TSSTTCTTCCEEECCSSCEEC
T ss_pred HHhccccCCCEEEccCCCcCC
Confidence 456788999999987653
No 62
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.55 E-value=1.1e-14 Score=164.46 Aligned_cols=227 Identities=19% Similarity=0.151 Sum_probs=154.9
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCc-hHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCccce
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTV-PEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI 413 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~-p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv 413 (587)
.++.+++++|.+....+..... +..++.+.+..+.+..+ |..+..+..++......+. ..+-|
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~------------ 89 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTR--YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE--LSQLS------------ 89 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGG--GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC--CCCCC------------
T ss_pred CCcEEECCCCCCCCcCHHHHhC--CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc--cCccC------------
Confidence 5677888888877432333444 66778888877776554 4444555444432211110 01100
Q ss_pred eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCcccc
Q 007860 414 TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLT 492 (587)
Q Consensus 414 ~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (587)
......+.+|++|+|++|.+.+..|..++++++|++|+|++|.+++..|..+.. ++|++|++++|++++..|..+.
T Consensus 90 ---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 166 (680)
T 1ziw_A 90 ---DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELD 166 (680)
T ss_dssp ---TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHG
T ss_pred ---hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhh
Confidence 001123356889999999999877788999999999999999999888888888 9999999999999976666554
Q ss_pred --CCCCCCEEEccCCcCcccCchhhhhcccCCceeecc-----------------ccccceEECCCCccccccc------
Q 007860 493 --SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-----------------VVYICCIRRGRNDYDFGLP------ 547 (587)
Q Consensus 493 --~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~l~~~~p------ 547 (587)
.+++|+.|++++|++.+..|..+..+. .|+.++++ ..+|+.|+|++|.+++..|
T Consensus 167 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l 245 (680)
T 1ziw_A 167 IFANSSLKKLELSSNQIKEFSPGCFHAIG-RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGL 245 (680)
T ss_dssp GGTTCEESEEECTTCCCCCBCTTGGGGSS-EECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGG
T ss_pred ccccccccEEECCCCcccccChhhhhhhh-hhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhcc
Confidence 568999999999999876676666654 36666554 2467777777777765433
Q ss_pred --ccccccccccccc--------CCCCCCcEEEccCCCCCCCCC
Q 007860 548 --QDLMSLSAKRNRY--------QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 548 --~~L~~L~l~~N~i--------~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
.+|+.|++++|++ ..+.+|+.|+|++|++++++.
T Consensus 246 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (680)
T 1ziw_A 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289 (680)
T ss_dssp GGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECT
T ss_pred CcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccCh
Confidence 1266777777755 456677777777777766554
No 63
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=3.1e-14 Score=142.39 Aligned_cols=83 Identities=23% Similarity=0.278 Sum_probs=48.8
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|+|++|.+.+. +.+..+++|++|+|++|.+++..+..+.. ++|++|+|++|++++..|..++.+++|+.|+++
T Consensus 64 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 141 (272)
T 3rfs_A 64 NVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141 (272)
T ss_dssp TCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECC
Confidence 455666666666542 35566666666666666666444444455 666666666666664444445666666666666
Q ss_pred CCcCcc
Q 007860 504 NNLLEG 509 (587)
Q Consensus 504 ~N~l~g 509 (587)
+|++++
T Consensus 142 ~n~l~~ 147 (272)
T 3rfs_A 142 HNQLQS 147 (272)
T ss_dssp SSCCCC
T ss_pred CCccCc
Confidence 666653
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.55 E-value=6.8e-15 Score=152.85 Aligned_cols=160 Identities=20% Similarity=0.193 Sum_probs=125.1
Q ss_pred CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC--CCCC-CCccEEeccCCc-CCccCCccccCCCCC
Q 007860 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS--GLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSSSKL 497 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~--~~~~-~~L~~L~Ls~N~-l~g~iP~~l~~l~~L 497 (587)
.+..|+.|+|++|.+++..+..+..+++|++|+|++|+++ .+|. .+.. ++|++|++++|+ +.+..|..++.+++|
T Consensus 98 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 176 (353)
T 2z80_A 98 SLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFL 176 (353)
T ss_dssp TCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEE
T ss_pred CCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCC
Confidence 4467889999999998766666899999999999999998 5665 5666 999999999984 665556788899999
Q ss_pred CEEEccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc---------ccccccc
Q 007860 498 QLVLLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP---------QDLMSLS 554 (587)
Q Consensus 498 ~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p---------~~L~~L~ 554 (587)
+.|++++|++.+..|..+..+. +|+.|+++ +.+|+.|+|++|++++..+ ..++.++
T Consensus 177 ~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~ 255 (353)
T 2z80_A 177 EELEIDASDLQSYEPKSLKSIQ-NVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFT 255 (353)
T ss_dssp EEEEEEETTCCEECTTTTTTCS-EEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEE
T ss_pred CEEECCCCCcCccCHHHHhccc-cCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccc
Confidence 9999999999877787777766 58888876 4678888998888875322 2344455
Q ss_pred cccccc------------CCCCCCcEEEccCCCCCCCCCCC
Q 007860 555 AKRNRY------------QRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 555 l~~N~i------------~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
++++.+ ..+++|+.|+|++|+|+.+|...
T Consensus 256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 256 FRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGI 296 (353)
T ss_dssp EESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTT
T ss_pred cccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHH
Confidence 555544 46788999999999999998764
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.54 E-value=5e-15 Score=159.46 Aligned_cols=144 Identities=28% Similarity=0.357 Sum_probs=80.3
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|++++|.+++ ++.. .++|++|++++|++++ +| .++. ++|++|++++|++++ +|..+ .+|+.|+++
T Consensus 112 ~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 112 SLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAG 181 (454)
T ss_dssp TCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECC
T ss_pred CCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECc
Confidence 34555555555543 1211 1456666666666663 55 3555 666666666666663 55433 356666666
Q ss_pred CCcCcccCchhhhhcccCCceeecc----------ccccceEECCCCccccccc-----cccccccccccccCC----CC
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLS----------VVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRYQR----QK 564 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Ls----------l~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i~~----l~ 564 (587)
+|++++ +| .+..+. +|+.|+++ ..+|+.|++++|+++ .+| +.|+.|++++|++.. +.
T Consensus 182 ~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N~l~~l~~~~~ 257 (454)
T 1jl5_A 182 NNQLEE-LP-ELQNLP-FLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNNLLKTLPDLPP 257 (454)
T ss_dssp SSCCSS-CC-CCTTCT-TCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSSCCSSCCSCCT
T ss_pred CCcCCc-Cc-cccCCC-CCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-cccccCCCCCCCEEECCCCcCCccccccc
Confidence 666664 55 344444 46666655 124566666666665 444 345556666666633 34
Q ss_pred CCcEEEccCCCCCCCCCC
Q 007860 565 SLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 565 ~L~~L~Ls~N~l~~~P~~ 582 (587)
+|+.|++++|+++++|..
T Consensus 258 ~L~~L~l~~N~l~~l~~~ 275 (454)
T 1jl5_A 258 SLEALNVRDNYLTDLPEL 275 (454)
T ss_dssp TCCEEECCSSCCSCCCCC
T ss_pred ccCEEECCCCcccccCcc
Confidence 566666666666666643
No 66
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.54 E-value=7.3e-15 Score=149.87 Aligned_cols=156 Identities=15% Similarity=0.083 Sum_probs=128.5
Q ss_pred EEEEEcCCCCCcccCchhh--cCCCCCCEEEccCCCCCCCCCC----CCCC-CCccEEeccCCcCCccCCccccCCCCCC
Q 007860 426 ISQIDLGSQGLKGYISDKI--SLLSNLVNLNLSTNSLGGTLPS----GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQ 498 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l--~~l~~L~~L~Ls~N~l~g~ip~----~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~ 498 (587)
|+.|+|++|.+.+.+|..+ ..+++|+.|+|++|.+++..+. .+.. ++|++|+|++|++++..|..++.+++|+
T Consensus 93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 172 (310)
T 4glp_A 93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT 172 (310)
T ss_dssp CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence 7789999999999999988 9999999999999999976662 2335 8999999999999988888999999999
Q ss_pred EEEccCCcCccc--Cchhh--hhcccCCceeecc-----------------ccccceEECCCCccccccc---------c
Q 007860 499 LVLLNNNLLEGR--VPEEL--YSIGVHGGAFDLS-----------------VVYICCIRRGRNDYDFGLP---------Q 548 (587)
Q Consensus 499 ~L~Ls~N~l~g~--ip~~l--~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~l~~~~p---------~ 548 (587)
+|+|++|++.+. ++... ..+. +|+.|+|+ +.+|++|+|++|++.+..| +
T Consensus 173 ~L~Ls~N~l~~~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~ 251 (310)
T 4glp_A 173 SLDLSDNPGLGERGLMAALCPHKFP-AIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSS 251 (310)
T ss_dssp EEECCSCTTCHHHHHHTTSCTTSSC-CCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCT
T ss_pred EEECCCCCCccchhhhHHHhhhcCC-CCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcC
Confidence 999999998753 22222 3333 68888887 3788999999999986544 4
Q ss_pred ccccccccccccCC-----CCCCcEEEccCCCCCCCCCC
Q 007860 549 DLMSLSAKRNRYQR-----QKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 549 ~L~~L~l~~N~i~~-----l~~L~~L~Ls~N~l~~~P~~ 582 (587)
.|+.|++++|+|.. .++|+.|+|++|+|+++|..
T Consensus 252 ~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~~~~~ 290 (310)
T 4glp_A 252 ALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNRAPQP 290 (310)
T ss_dssp TCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCSCCCT
T ss_pred cCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCCCchh
Confidence 78888999999843 35799999999999998764
No 67
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.54 E-value=1.9e-14 Score=154.95 Aligned_cols=124 Identities=19% Similarity=0.178 Sum_probs=90.3
Q ss_pred CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
.++.|+.|++++|.+++ +| ++.+++|+.|++++|++++. .++. ++|+.|++++|++++ +| ++.+++|+.|
T Consensus 168 ~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L 238 (457)
T 3bz5_A 168 PQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYF 238 (457)
T ss_dssp TCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEE
T ss_pred cCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEE
Confidence 34568899999999987 44 88999999999999999964 3667 999999999999996 77 8899999999
Q ss_pred EccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccc
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRN 558 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N 558 (587)
++++|++++ +| +..+. .|+.|+++.++|+.|++++|++.+.+| +.|+.|++++|
T Consensus 239 ~l~~N~l~~-~~--~~~l~-~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n 296 (457)
T 3bz5_A 239 DCSVNPLTE-LD--VSTLS-KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296 (457)
T ss_dssp ECCSSCCSC-CC--CTTCT-TCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTC
T ss_pred EeeCCcCCC-cC--HHHCC-CCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCC
Confidence 999999986 44 22332 466666665555555555555544443 33444444444
No 68
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=2.4e-14 Score=159.40 Aligned_cols=153 Identities=18% Similarity=0.107 Sum_probs=113.2
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.|+|++|.+++..+..+.++++|++|+|++|.+++..|..+.. ++|++|+|++|++++..|..++.+++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 46888999999999888888999999999999999999777878888 99999999999999777888999999999999
Q ss_pred cCCcCcccCchhhhhcccCCceeecc---------------ccccceEECCCCccccccccc----------cccccccc
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLPQD----------LMSLSAKR 557 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p~~----------L~~L~l~~ 557 (587)
++|++.+..+..++.+. +|+.|+++ +.+|++|+|++|++++..|.. +..|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 112 VETKLASLESFPIGQLI-TLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp TTSCCCCSSSSCCTTCT-TCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred cCCccccccccccCCCC-CCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999854446666655 46666665 345666666666666433321 22455666
Q ss_pred cccC-------CCCCCcEEEccCCCCC
Q 007860 558 NRYQ-------RQKSLMLLEMESQHAK 577 (587)
Q Consensus 558 N~i~-------~l~~L~~L~Ls~N~l~ 577 (587)
|++. ...+|+.|++++|.++
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred CCcceeCcccccCceeeeeeccCCccc
Confidence 6552 1225666666666553
No 69
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=1.6e-14 Score=160.91 Aligned_cols=145 Identities=14% Similarity=0.138 Sum_probs=71.4
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCC-CCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLP-SGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip-~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
.|+.|+|++|.+.+ +|..+..+++|+.|++++|.+.+..| ..+.. ++|++|++++|++++..|..++.+++|+.|++
T Consensus 377 ~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 377 SLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKM 455 (606)
T ss_dssp CCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred cccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEEC
Confidence 45555555555543 33445555555555555555554444 33444 55555555555555555555555555555555
Q ss_pred cCCcCccc-CchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc--------CCCCCCc
Q 007860 503 NNNLLEGR-VPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY--------QRQKSLM 567 (587)
Q Consensus 503 s~N~l~g~-ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i--------~~l~~L~ 567 (587)
++|++.+. +|..+..+ .+|+.|+|++|++++..| +.|+.|++++|++ ..+++|+
T Consensus 456 ~~n~l~~~~~~~~~~~l-----------~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 524 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANT-----------TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLS 524 (606)
T ss_dssp TTCEEGGGEECSCCTTC-----------TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCC
T ss_pred CCCcCCCcchHHhhccC-----------CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCC
Confidence 55555542 34434433 334444444444443222 2344444444443 2344455
Q ss_pred EEEccCCCCCCCCC
Q 007860 568 LLEMESQHAKGLPT 581 (587)
Q Consensus 568 ~L~Ls~N~l~~~P~ 581 (587)
.|+|++|+|+.+|.
T Consensus 525 ~L~l~~N~l~~~p~ 538 (606)
T 3vq2_A 525 TLDCSFNRIETSKG 538 (606)
T ss_dssp EEECTTSCCCCEES
T ss_pred EEECCCCcCcccCH
Confidence 55555555554443
No 70
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.53 E-value=3.1e-14 Score=145.25 Aligned_cols=150 Identities=19% Similarity=0.330 Sum_probs=99.0
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
+.|+.|+|++|.+.+..+ +..+++|+.|+|++|.+++ ++ .+.. ++|++|++++|++++ +|. +..+++|+.|++
T Consensus 63 ~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l 136 (308)
T 1h6u_A 63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYL 136 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEEC
T ss_pred CCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCCCCCEEEC
Confidence 346667777777664333 6677777777777777663 33 4555 667777777777763 443 666677777777
Q ss_pred cCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc------
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------ 560 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------ 560 (587)
++|++++ ++. +..+. +|+.|+++ +.+|+.|+|++|++++..+ +.|+.|++++|+|
T Consensus 137 ~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l 213 (308)
T 1h6u_A 137 DLNQITN-ISP-LAGLT-NLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL 213 (308)
T ss_dssp CSSCCCC-CGG-GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGG
T ss_pred CCCccCc-Ccc-ccCCC-CccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccc
Confidence 7777763 333 44433 46666655 4567888888888874221 4677788888877
Q ss_pred CCCCCCcEEEccCCCCCCCCCC
Q 007860 561 QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 561 ~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
..+++|+.|+|++|++++.|..
T Consensus 214 ~~l~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 214 ANTSNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp TTCTTCCEEEEEEEEEECCCEE
T ss_pred cCCCCCCEEEccCCeeecCCee
Confidence 4677888999999988887753
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.52 E-value=1.3e-14 Score=148.58 Aligned_cols=103 Identities=21% Similarity=0.165 Sum_probs=60.3
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-----------------CCC-CCccEEeccCCcCC
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-----------------LGQ-QSLVRLDLSDNQFT 484 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-----------------~~~-~~L~~L~Ls~N~l~ 484 (587)
++.|+.|+|++|.+++..+ +..+++|++|+|++|.+++ +|.. ... ++|++|++++|+++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT 133 (317)
T ss_dssp CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC
T ss_pred CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-ccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC
Confidence 3468889999998887655 8888888888888888773 2210 001 34555555555555
Q ss_pred ccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc
Q 007860 485 GSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 485 g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
+..|..++.+++|+.|+|++|++.+..+..+.....+|+.|+|+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~ 177 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECC
Confidence 44444555555566666666665543344443222235555444
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.52 E-value=2.5e-14 Score=153.93 Aligned_cols=142 Identities=22% Similarity=0.282 Sum_probs=66.2
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|++++|.+++ +|.. .++|+.|++++|.++ .+|. ++. ++|++|++++|++++ +|.. +++|+.|+++
T Consensus 196 ~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 265 (454)
T 1jl5_A 196 FLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVR 265 (454)
T ss_dssp TCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECC
T ss_pred CCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-cccc---ccccCEEECC
Confidence 34445555555443 2221 134555555555554 4442 444 555555555555552 3332 2445555555
Q ss_pred CCcCcccCchhhhhcccCCceeeccc----------cccceEECCCCcccc--ccccccccccccccccCC----CCCCc
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLSV----------VYICCIRRGRNDYDF--GLPQDLMSLSAKRNRYQR----QKSLM 567 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl----------~~L~~L~L~~N~l~~--~~p~~L~~L~l~~N~i~~----l~~L~ 567 (587)
+|++.+ +|..+ .+|+.|+++. .+|+.|++++|++++ .+|+.|+.|++++|++.+ +.+|+
T Consensus 266 ~N~l~~-l~~~~----~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~~~~L~ 340 (454)
T 1jl5_A 266 DNYLTD-LPELP----QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE 340 (454)
T ss_dssp SSCCSC-CCCCC----TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCCCTTCC
T ss_pred CCcccc-cCccc----CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccccCCcCC
Confidence 555542 33321 2344444441 234445555555543 233455555555555532 34555
Q ss_pred EEEccCCCCCCCCC
Q 007860 568 LLEMESQHAKGLPT 581 (587)
Q Consensus 568 ~L~Ls~N~l~~~P~ 581 (587)
.|+|++|+++++|.
T Consensus 341 ~L~L~~N~l~~lp~ 354 (454)
T 1jl5_A 341 RLIASFNHLAEVPE 354 (454)
T ss_dssp EEECCSSCCSCCCC
T ss_pred EEECCCCccccccc
Confidence 55665555555554
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.52 E-value=2.3e-14 Score=155.69 Aligned_cols=147 Identities=18% Similarity=0.106 Sum_probs=81.5
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCC---------------C-CCC-CCccEEeccCCcCCc
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPS---------------G-LGQ-QSLVRLDLSDNQFTG 485 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~---------------~-~~~-~~L~~L~Ls~N~l~g 485 (587)
++.|+.|+|++|.+++.+| +..+++|+.|+|++|.+++..+. . ... ++|+.|+|++|++++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~ 134 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITM 134 (487)
T ss_dssp CTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCS
T ss_pred CCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCC
Confidence 3467888888888887665 77888888888877777632111 0 001 445566666666665
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc-
Q 007860 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY- 560 (587)
Q Consensus 486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i- 560 (587)
..|..++.+++|+.|+|++|.+++..|..++.....|+.|+|+ +|.+++. ..+.|..|+|++|+|
T Consensus 135 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls----------~N~l~~~~~~~~l~~L~~L~Ls~N~l~ 204 (487)
T 3oja_A 135 LRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ----------YNFIYDVKGQVVFAKLKTLDLSSNKLA 204 (487)
T ss_dssp GGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT----------TSCCCEEECCCCCTTCCEEECCSSCCC
T ss_pred CCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC----------CCccccccccccCCCCCEEECCCCCCC
Confidence 5555566666666666666666655555554222235555444 4444321 123344444555444
Q ss_pred ------CCCCCCcEEEccCCCCCCCCC
Q 007860 561 ------QRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 561 ------~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
..+.+|+.|+|++|+|+++|.
T Consensus 205 ~~~~~~~~l~~L~~L~Ls~N~l~~lp~ 231 (487)
T 3oja_A 205 FMGPEFQSAAGVTWISLRNNKLVLIEK 231 (487)
T ss_dssp EECGGGGGGTTCSEEECTTSCCCEECT
T ss_pred CCCHhHcCCCCccEEEecCCcCcccch
Confidence 233445555555555555544
No 74
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.51 E-value=1.5e-14 Score=144.82 Aligned_cols=143 Identities=16% Similarity=0.106 Sum_probs=88.5
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
+.|+.|+|++|.+++..+..+..+++|++|+|++|++++..+..+.. ++|++|++++|++++..|..++.+++|+.|++
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 164 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL 164 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence 34677788888777666666777788888888888877555555666 77888888888777555555677778888888
Q ss_pred cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc-CCCCCCcEEEccCCC
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY-QRQKSLMLLEMESQH 575 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i-~~l~~L~~L~Ls~N~ 575 (587)
++|++++..+..+..+ .+|++|+|++|++++..| +.|+.|++++|.+ ..++.|+.|++..|+
T Consensus 165 ~~n~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~l~~~~n~ 233 (272)
T 3rfs_A 165 SYNQLQSLPEGVFDKL-----------TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIRYLSEWINK 233 (272)
T ss_dssp CSSCCCCCCTTTTTTC-----------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHH
T ss_pred CCCCcCccCHHHhcCC-----------ccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcHHHHHHHHHHh
Confidence 8887774333323332 235555666666654322 2344444555554 223345555554444
Q ss_pred CC
Q 007860 576 AK 577 (587)
Q Consensus 576 l~ 577 (587)
++
T Consensus 234 ~~ 235 (272)
T 3rfs_A 234 HS 235 (272)
T ss_dssp TG
T ss_pred CC
Confidence 44
No 75
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=3.3e-14 Score=135.09 Aligned_cols=139 Identities=16% Similarity=0.183 Sum_probs=105.1
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.|++++|.+. .+| .+..+++|+.|++++|.++ . ++.+.. ++|++|++++|++++..|..++.+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-N-YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-C-CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-c-chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45788999999988 556 6889999999999999765 3 346777 89999999999999878888999999999999
Q ss_pred cCCcCcccCchhhhhcccCCceeeccccccceEECCCCc-cccccc-----ccccccccccccc------CCCCCCcEEE
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRND-YDFGLP-----QDLMSLSAKRNRY------QRQKSLMLLE 570 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~-l~~~~p-----~~L~~L~l~~N~i------~~l~~L~~L~ 570 (587)
++|++++..|..+..+. +|++|+|++|+ +. .+| +.|+.|++++|+| ..+++|+.|+
T Consensus 120 s~n~i~~~~~~~l~~l~-----------~L~~L~L~~n~~i~-~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~ 187 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLP-----------KVNSIDLSYNGAIT-DIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLY 187 (197)
T ss_dssp CSSBCBGGGHHHHTTCS-----------SCCEEECCSCTBCC-CCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEE
T ss_pred cCCccCcHhHHHHhhCC-----------CCCEEEccCCCCcc-ccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEE
Confidence 99999876777676543 35566666665 33 333 4577777888766 5578899999
Q ss_pred ccCCCCCC
Q 007860 571 MESQHAKG 578 (587)
Q Consensus 571 Ls~N~l~~ 578 (587)
+++|++.+
T Consensus 188 l~~N~i~~ 195 (197)
T 4ezg_A 188 AFSQTIGG 195 (197)
T ss_dssp ECBC----
T ss_pred eeCcccCC
Confidence 99998864
No 76
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=6e-14 Score=130.81 Aligned_cols=135 Identities=19% Similarity=0.278 Sum_probs=107.9
Q ss_pred CCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccE
Q 007860 402 CAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475 (587)
Q Consensus 402 c~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~ 475 (587)
|...|.|.|.++.|...... ....++.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+.. ++|++
T Consensus 1 Cp~~C~C~~~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTI 80 (177)
T ss_dssp CCTTCEEETTEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCCCEeCCCEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCE
Confidence 44445589999999765432 2346899999999999877778899999999999999999555555677 99999
Q ss_pred EeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc
Q 007860 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP 547 (587)
Q Consensus 476 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p 547 (587)
|+|++|++++..+..+..+++|+.|+|++|+++ .+|...... +.+|++|+|++|++.+..|
T Consensus 81 L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~----------l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 81 LYLHENKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDR----------LTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTT----------CTTCCEEECCSSCBCCCHH
T ss_pred EECCCCCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcC----------CcccCEEEecCCCeeccCc
Confidence 999999999766667899999999999999998 566554321 3357788888999986543
No 77
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.51 E-value=3e-14 Score=156.90 Aligned_cols=150 Identities=23% Similarity=0.361 Sum_probs=94.1
Q ss_pred Cccce-eecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCcc
Q 007860 409 AWEGI-TCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGS 486 (587)
Q Consensus 409 ~~~gv-~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~ 486 (587)
.|.++ .|... +++.|+|++|++++ +|..+ +++|+.|+|++|+|+ .+| .. ++|++|+|++|+|++
T Consensus 49 ~~~~l~~C~~~------~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~- 114 (571)
T 3cvr_A 49 AVSLLKECLIN------QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST- 114 (571)
T ss_dssp HHHHHHHHHHT------TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-
T ss_pred hhhhccccccC------CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-
Confidence 47777 56432 36667777777765 55544 266777777777777 566 33 677777777777774
Q ss_pred CCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeecc----------ccccceEECCCCccccccc---cccccc
Q 007860 487 IPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS----------VVYICCIRRGRNDYDFGLP---QDLMSL 553 (587)
Q Consensus 487 iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls----------l~~L~~L~L~~N~l~~~~p---~~L~~L 553 (587)
+|. +.. +|+.|+|++|+|++ +|. ...+|+.|+|+ +.+|+.|+|++|++++ +| .+|+.|
T Consensus 115 ip~-l~~--~L~~L~Ls~N~l~~-lp~----~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L 185 (571)
T 3cvr_A 115 LPE-LPA--SLKHLDVDNNQLTM-LPE----LPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTF-LPELPESLEAL 185 (571)
T ss_dssp CCC-CCT--TCCEEECCSSCCSC-CCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEE
T ss_pred cch-hhc--CCCEEECCCCcCCC-CCC----cCccccEEeCCCCccCcCCCcCCCcCEEECCCCCCCC-cchhhCCCCEE
Confidence 666 544 67777777777764 665 22346666666 2356677777777663 44 456666
Q ss_pred cccccccCCCC----CC-------cEEEccCCCCCCCCC
Q 007860 554 SAKRNRYQRQK----SL-------MLLEMESQHAKGLPT 581 (587)
Q Consensus 554 ~l~~N~i~~l~----~L-------~~L~Ls~N~l~~~P~ 581 (587)
+|++|+|+.+. +| +.|+|++|+|+.+|.
T Consensus 186 ~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp~ 224 (571)
T 3cvr_A 186 DVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224 (571)
T ss_dssp ECCSSCCSSCCCCC--------CCEEEECCSSCCCCCCG
T ss_pred ECcCCCCCchhhHHHhhhcccccceEEecCCCcceecCH
Confidence 77777665433 35 667777777777665
No 78
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.50 E-value=1e-13 Score=131.37 Aligned_cols=133 Identities=17% Similarity=0.233 Sum_probs=108.1
Q ss_pred CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860 400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (587)
Q Consensus 400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L 473 (587)
.+|...|.|.|..+.|...... ....++.|+|++|.|+ .+|..+..+++|+.|+|++|.+++..+..+.. ++|
T Consensus 2 ~~CP~~C~C~~~~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L 80 (193)
T 2wfh_A 2 SRCPTECTCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80 (193)
T ss_dssp --CCTTCEEETTEEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEeCCCEEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCC
Confidence 4677777788999999765432 2346899999999998 77899999999999999999999777777888 999
Q ss_pred cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc
Q 007860 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF 544 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~ 544 (587)
++|+|++|++++..|..|..+++|+.|+|++|+|+ .+|...+.. +.+|+.|+|++|++..
T Consensus 81 ~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~----------l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 81 LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFND----------LSALSHLAIGANPLYC 140 (193)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTT----------CTTCCEEECCSSCEEC
T ss_pred CEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhc----------CccccEEEeCCCCeec
Confidence 99999999999877788999999999999999999 466543321 2356778888888864
No 79
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.50 E-value=9.9e-14 Score=141.45 Aligned_cols=151 Identities=18% Similarity=0.295 Sum_probs=125.9
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+..|+.|++++|.+.. ++ .+..+++|+.|+|++|.+++ ++. +.. ++|++|+|++|++++ +| .+..+++|+.|+
T Consensus 40 l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred cCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 3468899999999985 55 68999999999999999994 555 777 999999999999994 55 689999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc-----
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY----- 560 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i----- 560 (587)
+++|++++ ++. +..+. +|+.|+++ +.+|+.|+|++|++++..+ +.|+.|++++|+|
T Consensus 114 l~~n~l~~-~~~-l~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 190 (308)
T 1h6u_A 114 LTSTQITD-VTP-LAGLS-NLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP 190 (308)
T ss_dssp CTTSCCCC-CGG-GTTCT-TCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCC-chh-hcCCC-CCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccCcChh
Confidence 99999985 654 66655 69999888 5679999999999884221 5688889999987
Q ss_pred -CCCCCCcEEEccCCCCCCCCCC
Q 007860 561 -QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 561 -~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
..+++|+.|+|++|+++++|..
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~l 213 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSPL 213 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGGG
T ss_pred hcCCCCCCEEEccCCccCccccc
Confidence 4677899999999999988753
No 80
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.50 E-value=5.8e-14 Score=162.73 Aligned_cols=154 Identities=17% Similarity=0.100 Sum_probs=125.2
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCC-CCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTL-PSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~i-p~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
..++.|+|++|.+++..|..+.++++|++|+|++|.+.+.+ |..+.. ++|++|+|++|++++..|..++.+++|++|+
T Consensus 24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 103 (844)
T 3j0a_A 24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR 103 (844)
T ss_dssp TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence 46888999999999888889999999999999999777677 666777 8999999999999988888999999999999
Q ss_pred ccCCcCcccCchh--hhhcccCCceeecc---------------ccccceEECCCCccccccc--------ccccccccc
Q 007860 502 LNNNLLEGRVPEE--LYSIGVHGGAFDLS---------------VVYICCIRRGRNDYDFGLP--------QDLMSLSAK 556 (587)
Q Consensus 502 Ls~N~l~g~ip~~--l~~~~~~L~~l~Ls---------------l~~L~~L~L~~N~l~~~~p--------~~L~~L~l~ 556 (587)
|++|.+.+.+|.. +..+. +|+.|+|+ +.+|++|+|++|.+++..| ..|+.|+++
T Consensus 104 Ls~n~l~~~~~~~~~~~~L~-~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 104 LYFCGLSDAVLKDGYFRNLK-ALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp CTTCCCSSCCSTTCCCSSCS-SCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred CcCCCCCcccccCccccccC-CCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 9999998766655 55555 68888887 5678899999999876544 457777888
Q ss_pred ccccCC--------CC------CCcEEEccCCCCCC
Q 007860 557 RNRYQR--------QK------SLMLLEMESQHAKG 578 (587)
Q Consensus 557 ~N~i~~--------l~------~L~~L~Ls~N~l~~ 578 (587)
.|.+.. +. .|+.|+|++|++++
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~ 218 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTV 218 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSST
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCch
Confidence 887732 22 28999999998765
No 81
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.50 E-value=6.2e-14 Score=156.25 Aligned_cols=160 Identities=16% Similarity=0.102 Sum_probs=113.2
Q ss_pred ceeecCCCC-----CCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc
Q 007860 412 GITCHPNKD-----ETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG 485 (587)
Q Consensus 412 gv~c~~~~~-----~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g 485 (587)
.+.|..... ..+..++.|+|++|.|++..+..|.++++|++|+|++|+|++..|..+.. ++|++|+|++|+|++
T Consensus 35 ~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~ 114 (635)
T 4g8a_A 35 TYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS 114 (635)
T ss_dssp EEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred EEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC
Confidence 456754432 12346899999999999888889999999999999999999666667888 999999999999996
Q ss_pred cCCccccCCCCCCEEEccCCcCcccCch-hhhhcccCCceeeccccccceEECCCCcccc-ccc------cccccccccc
Q 007860 486 SIPDSLTSSSKLQLVLLNNNLLEGRVPE-ELYSIGVHGGAFDLSVVYICCIRRGRNDYDF-GLP------QDLMSLSAKR 557 (587)
Q Consensus 486 ~iP~~l~~l~~L~~L~Ls~N~l~g~ip~-~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~-~~p------~~L~~L~l~~ 557 (587)
..|..|..+++|++|+|++|++++ +|. .++.+. +|+ +|+|++|+++. .+| +.|+.|++++
T Consensus 115 l~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~~~~L~-~L~----------~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~ 182 (635)
T 4g8a_A 115 LALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK-TLK----------ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 182 (635)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCC-STTCCCTTCT-TCC----------EEECCSSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCHHHhcCCCCCCEEECCCCcCCC-CChhhhhcCc-ccC----------eeccccCccccCCCchhhccchhhhhhcccC
Confidence 555678999999999999999995 554 455544 344 45555555532 122 2345555555
Q ss_pred cccCCC------------CCCcEEEccCCCCCCCCCCC
Q 007860 558 NRYQRQ------------KSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 558 N~i~~l------------~~L~~L~Ls~N~l~~~P~~~ 583 (587)
|+|... ..+..++++.|.++.++...
T Consensus 183 N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~ 220 (635)
T 4g8a_A 183 NKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGA 220 (635)
T ss_dssp SCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTT
T ss_pred ccccccccccccchhhhhhhhhhhhcccCcccccCccc
Confidence 555211 12345667777776665543
No 82
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=3.6e-14 Score=131.06 Aligned_cols=139 Identities=19% Similarity=0.196 Sum_probs=115.1
Q ss_pred eeEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 424 ~~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+.++.|+|++|.++ +.+|..+..+++|+.|+|++|.+++. ..+.. ++|++|+|++|++++.+|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 45889999999998 88999899999999999999999955 67777 9999999999999987898888899999999
Q ss_pred ccCCcCcccCc--hhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCC
Q 007860 502 LNNNLLEGRVP--EELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 502 Ls~N~l~g~ip--~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~ 579 (587)
|++|++++ +| ..+.. +.+|++|+|++|++++ +|.. ....+..+++|+.|++++|.+..+
T Consensus 102 Ls~N~l~~-~~~~~~l~~-----------l~~L~~L~l~~N~l~~-~~~~------~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKK-----------LECLKSLDLFNCEVTN-LNDY------RESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CBSSSCCS-SGGGGGGSS-----------CSCCCEEECCSSGGGT-STTH------HHHHHTTCSSCCEETTEETTSCBC
T ss_pred ccCCccCc-chhHHHHhc-----------CCCCCEEEeeCCcCcc-hHHH------HHHHHHhCccCcEecCCCCChhhc
Confidence 99999984 54 34433 3467888999999983 4430 012356788999999999999999
Q ss_pred CCCC
Q 007860 580 PTLP 583 (587)
Q Consensus 580 P~~~ 583 (587)
|...
T Consensus 163 ~~~~ 166 (168)
T 2ell_A 163 PDSD 166 (168)
T ss_dssp CSSS
T ss_pred cccc
Confidence 8754
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.48 E-value=1e-13 Score=140.27 Aligned_cols=140 Identities=24% Similarity=0.268 Sum_probs=84.6
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
+.|+.|+|++|.+++..+ +..+++|+.|+|++|.+++ +| .+.. ++|++|++++|++++ + +.+..+++|+.|++
T Consensus 68 ~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l 141 (291)
T 1h6t_A 68 PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYL 141 (291)
T ss_dssp TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEEC
T ss_pred CCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEc
Confidence 345566666666654333 5566666666666666653 33 2444 666666666666653 2 24555666666666
Q ss_pred cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccccc------CCCCCCcEEEcc
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------QRQKSLMLLEME 572 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------~~l~~L~~L~Ls 572 (587)
++|++++ + ..+.. +.+|++|+|++|++++..| +.|+.|++++|+| ..+++|+.|+|+
T Consensus 142 ~~n~l~~-~-~~l~~-----------l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 142 GNNKITD-I-TVLSR-----------LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 208 (291)
T ss_dssp CSSCCCC-C-GGGGG-----------CTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEE
T ss_pred cCCcCCc-c-hhhcc-----------CCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCCCEEECc
Confidence 6666653 2 22332 3456777777777764322 4577777888876 567788889999
Q ss_pred CCCCCCCCCC
Q 007860 573 SQHAKGLPTL 582 (587)
Q Consensus 573 ~N~l~~~P~~ 582 (587)
+|+++..|..
T Consensus 209 ~n~i~~~~~~ 218 (291)
T 1h6t_A 209 SQECLNKPIN 218 (291)
T ss_dssp EEEEECCCEE
T ss_pred CCcccCCccc
Confidence 8888776653
No 84
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.47 E-value=2.3e-13 Score=137.49 Aligned_cols=130 Identities=22% Similarity=0.216 Sum_probs=66.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|+|++|.++ .+|..+..+++|+.|+|++|++++..|..+.. ++|++|+|++|++++..+..+..+++|+.|+|+
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 156 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA 156 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence 4555555555555 44555555555555555555555333344444 555555555555554333344555555555555
Q ss_pred CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK 577 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~ 577 (587)
+|+++ .+|..++.. +.+|+.|+|++|+++ .+|..+ ..+..|+.|+|++|.+.
T Consensus 157 ~N~l~-~l~~~~~~~----------l~~L~~L~L~~N~l~-~ip~~~----------~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 157 NNNLT-ELPAGLLNG----------LENLDTLLLQENSLY-TIPKGF----------FGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp TSCCS-CCCTTTTTT----------CTTCCEEECCSSCCC-CCCTTT----------TTTCCCSEEECCSCCBC
T ss_pred CCcCC-ccCHHHhcC----------cCCCCEEECCCCcCC-ccChhh----------cccccCCeEEeCCCCcc
Confidence 55555 344332221 223445555556555 444321 22335667777776654
No 85
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.47 E-value=7e-14 Score=144.51 Aligned_cols=138 Identities=16% Similarity=0.221 Sum_probs=70.1
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|++++|.+.+..+ +..+++|+.|++++|.+.+..+ +.. ++|++|++++|++++ +|. +..+++|+.|+++
T Consensus 178 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~ 251 (347)
T 4fmz_A 178 DLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIG 251 (347)
T ss_dssp TCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred CCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECC
Confidence 35555555555543222 5555555555555555553222 333 556666666665552 333 5555566666666
Q ss_pred CCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc--------CCCCCCcEEEc
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY--------QRQKSLMLLEM 571 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i--------~~l~~L~~L~L 571 (587)
+|.+.+ ++ .+.. +.+|+.|++++|+++.. -.++|+.|++++|++ ..+++|+.|+|
T Consensus 252 ~n~l~~-~~-~~~~-----------l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L 318 (347)
T 4fmz_A 252 TNQISD-IN-AVKD-----------LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFL 318 (347)
T ss_dssp SSCCCC-CG-GGTT-----------CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEEC
T ss_pred CCccCC-Ch-hHhc-----------CCCcCEEEccCCccCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEc
Confidence 665552 22 2332 33455555555555421 113455555665554 34556666666
Q ss_pred cCCCCCCCCC
Q 007860 572 ESQHAKGLPT 581 (587)
Q Consensus 572 s~N~l~~~P~ 581 (587)
++|+++++|.
T Consensus 319 ~~n~l~~~~~ 328 (347)
T 4fmz_A 319 SQNHITDIRP 328 (347)
T ss_dssp CSSSCCCCGG
T ss_pred cCCccccccC
Confidence 6666665543
No 86
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.46 E-value=3.1e-13 Score=127.89 Aligned_cols=128 Identities=26% Similarity=0.393 Sum_probs=102.0
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
+.+++++|+++ .+|..+.. +|+.|+|++|.+++..+.. +.. ++|++|+|++|++++..|..+..+++|+.|+|++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56999999996 67776644 8999999999999665543 666 9999999999999988899999999999999999
Q ss_pred CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCC
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~ 578 (587)
|+|++..|..+..+ .+|+.|+|++|++++..|.. |..+++|+.|+|++|.+++
T Consensus 88 N~l~~~~~~~~~~l-----------~~L~~L~L~~N~l~~~~~~~----------~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGL-----------HQLKTLNLYDNQISCVMPGS----------FEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTC-----------TTCCEEECCSSCCCEECTTS----------STTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCC-----------CCCCEEECCCCcCCeeCHHH----------hhcCCCCCEEEeCCCCccC
Confidence 99997555445443 35778888899998765653 3445567777777777664
No 87
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.45 E-value=4.7e-14 Score=147.15 Aligned_cols=50 Identities=12% Similarity=0.051 Sum_probs=29.1
Q ss_pred ccceEECCCCccccccc-----------cccccccccccccCC-------------CCCCcEEEccCCCCCCCC
Q 007860 531 YICCIRRGRNDYDFGLP-----------QDLMSLSAKRNRYQR-------------QKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 531 ~L~~L~L~~N~l~~~~p-----------~~L~~L~l~~N~i~~-------------l~~L~~L~Ls~N~l~~~P 580 (587)
+|++|+|++|++++..+ ..|+.|+|++|+|.. .++|+.|+|++|+|+..+
T Consensus 168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 56666666666653222 356666666666533 346666666666666543
No 88
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.45 E-value=8.7e-14 Score=143.81 Aligned_cols=136 Identities=15% Similarity=0.225 Sum_probs=106.9
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+..++.|++++|.+.+..+ +..+++|+.|++++|.+++ ++. +.. ++|++|++++|++++ + +.+..+++|+.|+
T Consensus 198 l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~ 271 (347)
T 4fmz_A 198 LTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISD-I-NAVKDLTKLKMLN 271 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCCEEE
T ss_pred CCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCC-C-hhHhcCCCcCEEE
Confidence 3468899999999986554 8999999999999999994 444 667 999999999999985 4 4688999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc------CCCCCCcEE
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY------QRQKSLMLL 569 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i------~~l~~L~~L 569 (587)
+++|++.+ ++ .+.. +.+|+.|+|++|++.+..| +.|+.|++++|++ ..+++|+.|
T Consensus 272 l~~n~l~~-~~-~~~~-----------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 338 (347)
T 4fmz_A 272 VGSNQISD-IS-VLNN-----------LSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSA 338 (347)
T ss_dssp CCSSCCCC-CG-GGGG-----------CTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEE
T ss_pred ccCCccCC-Ch-hhcC-----------CCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhcccee
Confidence 99999984 43 3333 3456777777888765433 4577888888877 567889999
Q ss_pred EccCCCCC
Q 007860 570 EMESQHAK 577 (587)
Q Consensus 570 ~Ls~N~l~ 577 (587)
++++|+|+
T Consensus 339 ~l~~N~i~ 346 (347)
T 4fmz_A 339 DFANQVIK 346 (347)
T ss_dssp SSSCC---
T ss_pred ehhhhccc
Confidence 99999986
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2e-13 Score=151.80 Aligned_cols=143 Identities=23% Similarity=0.256 Sum_probs=110.8
Q ss_pred CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
.++.|+.|+|++|.+.+..+ +..|++|+.|+|++|.|.+ +| .+.. ++|+.|+|++|++++ + +.+..+++|+.|
T Consensus 63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L 136 (605)
T 1m9s_A 63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESL 136 (605)
T ss_dssp GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGGCTTCSEE
T ss_pred cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccCCCccCEE
Confidence 34568889999999987555 8899999999999999984 44 5677 899999999999984 4 458888999999
Q ss_pred EccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccc----ccccccccccccc------CCCCCCcEEE
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY------QRQKSLMLLE 570 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i------~~l~~L~~L~ 570 (587)
+|++|++++ + ..+.. +.+|+.|+|++|++++..| +.|+.|+|++|+| ..+++|+.|+
T Consensus 137 ~Ls~N~l~~-l-~~l~~-----------l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 137 YLGNNKITD-I-TVLSR-----------LTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLE 203 (605)
T ss_dssp ECCSSCCCC-C-GGGGS-----------CTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEE
T ss_pred ECCCCccCC-c-hhhcc-----------cCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHccCCCCCEEE
Confidence 999999985 3 33443 3456677777777765333 5677888888876 5678899999
Q ss_pred ccCCCCCCCCCCC
Q 007860 571 MESQHAKGLPTLP 583 (587)
Q Consensus 571 Ls~N~l~~~P~~~ 583 (587)
|++|++.+.|...
T Consensus 204 L~~N~l~~~p~~~ 216 (605)
T 1m9s_A 204 LFSQECLNKPINH 216 (605)
T ss_dssp CCSEEEECCCCCC
T ss_pred ccCCcCcCCcccc
Confidence 9999999887654
No 90
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.44 E-value=1.2e-12 Score=127.56 Aligned_cols=132 Identities=21% Similarity=0.265 Sum_probs=107.8
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (587)
Q Consensus 427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 505 (587)
+.++.+++.+. .+|..+. ++|+.|+|++|.+++..|..+.. ++|++|+|++|+++...+..+..+++|+.|+|++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45899999987 6676554 89999999999999888888888 99999999999998544466789999999999999
Q ss_pred cCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860 506 LLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 506 ~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
+|++ +|...+.. +.+|+.|+|++|+++ .+|..+ ..+.+|+.|+|++|+|+++|...
T Consensus 99 ~l~~-l~~~~~~~----------l~~L~~L~Ls~N~l~-~lp~~~----------~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 99 QLTV-LPSAVFDR----------LVHLKELFMCCNKLT-ELPRGI----------ERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCC-CCTTTTTT----------CTTCCEEECCSSCCC-SCCTTG----------GGCTTCSEEECCSSCCCCCCTTT
T ss_pred cCCc-cChhHhCc----------chhhCeEeccCCccc-ccCccc----------ccCCCCCEEECCCCcCCccCHHH
Confidence 9994 55543321 335778888899998 777653 45679999999999999999753
No 91
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.43 E-value=1.2e-12 Score=126.77 Aligned_cols=134 Identities=19% Similarity=0.330 Sum_probs=110.5
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (587)
Q Consensus 427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 505 (587)
+.+++++++++ .+|..+. ++|+.|+|++|.+++..+..+.. ++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 35899999998 5676554 78999999999999666667888 99999999999999888999999999999999999
Q ss_pred cCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCCCC
Q 007860 506 LLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 506 ~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~~ 584 (587)
+|+ .+|...+.. +.+|+.|+|++|++++..|. .|..+.+|+.|+|++|+|+++|...+
T Consensus 91 ~l~-~l~~~~f~~----------l~~L~~L~L~~N~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~~~~~~~ 148 (220)
T 2v9t_B 91 KIT-ELPKSLFEG----------LFSLQLLLLNANKINCLRVD----------AFQDLHNLNLLSLYDNKLQTIAKGTF 148 (220)
T ss_dssp CCC-CCCTTTTTT----------CTTCCEEECCSSCCCCCCTT----------TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred cCC-ccCHhHccC----------CCCCCEEECCCCCCCEeCHH----------HcCCCCCCCEEECCCCcCCEECHHHH
Confidence 999 577665432 33577888889999854443 35667899999999999999987543
No 92
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.42 E-value=1.1e-12 Score=141.23 Aligned_cols=145 Identities=17% Similarity=0.179 Sum_probs=118.4
Q ss_pred CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
.++.|+.|+|++|.+++. | ++.+++|++|++++|.+++ +| ++. ++|++|++++|++++ +| ++.+++|+.|
T Consensus 62 ~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L 132 (457)
T 3bz5_A 62 KLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYL 132 (457)
T ss_dssp GCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEE
T ss_pred ccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEE
Confidence 345688899999998874 3 8889999999999999985 44 667 899999999999985 55 8889999999
Q ss_pred EccCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----ccccccccccccc----
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRY---- 560 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i---- 560 (587)
++++|++++ ++ ++.+. +|+.|+++ +.+|+.|+|++|++++ +| +.|+.|++++|+|
T Consensus 133 ~l~~N~l~~-l~--l~~l~-~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~l~~l~~L~~L~l~~N~l~~~~ 207 (457)
T 3bz5_A 133 NCARNTLTE-ID--VSHNT-QLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LDVSQNKLLNRLNCDTNNITKLD 207 (457)
T ss_dssp ECTTSCCSC-CC--CTTCT-TCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CCCTTCTTCCEEECCSSCCSCCC
T ss_pred ECCCCccce-ec--cccCC-cCCEEECCCCCcccccccccCCcCCEEECCCCccce-eccccCCCCCEEECcCCcCCeec
Confidence 999999986 54 55554 58888877 4578999999999885 44 5688888999987
Q ss_pred -CCCCCCcEEEccCCCCCCCC
Q 007860 561 -QRQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 561 -~~l~~L~~L~Ls~N~l~~~P 580 (587)
..+++|+.|+|++|+|+++|
T Consensus 208 l~~l~~L~~L~Ls~N~l~~ip 228 (457)
T 3bz5_A 208 LNQNIQLTFLDCSSNKLTEID 228 (457)
T ss_dssp CTTCTTCSEEECCSSCCSCCC
T ss_pred cccCCCCCEEECcCCcccccC
Confidence 56789999999999999988
No 93
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.41 E-value=2.1e-13 Score=130.47 Aligned_cols=125 Identities=24% Similarity=0.271 Sum_probs=97.8
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..|+.|+|++|.+++..+..+..+++|++|+|++|.+++..+..+.. ++|++|+|++|++++..+..+..+++|+.|+|
T Consensus 52 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 52 TSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 45889999999999777777899999999999999999555555677 99999999999999766666899999999999
Q ss_pred cCCcCcccCchh-hhhcccCCceeeccccccceEECCCCccccccccccccccccccccC
Q 007860 503 NNNLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQ 561 (587)
Q Consensus 503 s~N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~ 561 (587)
++|++++ +|.. +..+ .+|+.|+|++|++.+.. +.|+.|+++.|++.
T Consensus 132 ~~N~l~~-~~~~~~~~l-----------~~L~~L~l~~N~~~~~~-~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 132 YQNQLKS-VPDGVFDRL-----------TSLQYIWLHDNPWDCTC-PGIRYLSEWINKHS 178 (208)
T ss_dssp CSSCCSC-CCTTTTTTC-----------TTCCEEECCSCCBCCCT-TTTHHHHHHHHHCT
T ss_pred CCCccce-eCHHHhccC-----------CCccEEEecCCCeecCC-CCHHHHHHHHHhCC
Confidence 9999995 5554 3433 34566666677776443 35667777776663
No 94
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.41 E-value=3.8e-13 Score=131.61 Aligned_cols=137 Identities=16% Similarity=0.120 Sum_probs=77.0
Q ss_pred eEEEEEcCC-CCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCcc---EEeccCC-cCCccCCccccCCCCCC
Q 007860 425 VISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLV---RLDLSDN-QFTGSIPDSLTSSSKLQ 498 (587)
Q Consensus 425 ~l~~L~L~~-n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~---~L~Ls~N-~l~g~iP~~l~~l~~L~ 498 (587)
.|+.|+|++ |.+++..+..+..+++|+.|++++|.+++ +|. +.. ++|+ +|++++| ++++..+..+..+++|+
T Consensus 81 ~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 81 KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred CCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 345555555 55554444445555555555555555552 444 333 4444 5555555 55533333455555555
Q ss_pred -EEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCc-cccccc-------cccccccccccccC-----CCC
Q 007860 499 -LVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRND-YDFGLP-------QDLMSLSAKRNRYQ-----RQK 564 (587)
Q Consensus 499 -~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~-l~~~~p-------~~L~~L~l~~N~i~-----~l~ 564 (587)
.|++++|+++ .+|...+.. .+|+.|+|++|+ ++...+ +.|+.|++++|+|. .+.
T Consensus 159 ~~L~l~~n~l~-~i~~~~~~~-----------~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~ 226 (239)
T 2xwt_C 159 LTLKLYNNGFT-SVQGYAFNG-----------TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLE 226 (239)
T ss_dssp EEEECCSCCCC-EECTTTTTT-----------CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCT
T ss_pred eEEEcCCCCCc-ccCHhhcCC-----------CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhc
Confidence 5555555554 444433322 246777788884 653211 46888899999983 567
Q ss_pred CCcEEEccCCC
Q 007860 565 SLMLLEMESQH 575 (587)
Q Consensus 565 ~L~~L~Ls~N~ 575 (587)
+|+.|+++++.
T Consensus 227 ~L~~L~l~~~~ 237 (239)
T 2xwt_C 227 HLKELIARNTW 237 (239)
T ss_dssp TCSEEECTTC-
T ss_pred cCceeeccCcc
Confidence 89999998763
No 95
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.41 E-value=1.2e-12 Score=144.22 Aligned_cols=98 Identities=17% Similarity=0.235 Sum_probs=67.0
Q ss_pred CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCc-cCCccccCCCCCCE
Q 007860 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTG-SIPDSLTSSSKLQL 499 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g-~iP~~l~~l~~L~~ 499 (587)
.+..|+.|+|++|.+++..|..|.++++|++|++++|.+++..+..++. ++|++|++++|++++ .+|..++++++|++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~ 153 (570)
T 2z63_A 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEH 153 (570)
T ss_dssp TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCE
T ss_pred CchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCE
Confidence 3456777777777777666677777777777777777777433335666 777777777777765 46777777777777
Q ss_pred EEccCCcCcccCchhhhhcc
Q 007860 500 VLLNNNLLEGRVPEELYSIG 519 (587)
Q Consensus 500 L~Ls~N~l~g~ip~~l~~~~ 519 (587)
|++++|++.+..|..+..+.
T Consensus 154 L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 154 LDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp EECTTSCCCEECGGGGHHHH
T ss_pred EeCcCCccceecHHHccchh
Confidence 77777777754455554443
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.41 E-value=7.9e-13 Score=145.61 Aligned_cols=137 Identities=22% Similarity=0.308 Sum_probs=104.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
.|+.|+|++|.|+ .+| ..+++|+.|+|++|+|++ +|. +. .+|++|+|++|+|++ +|. .+++|+.|+|++
T Consensus 81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~-~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~ 149 (571)
T 3cvr_A 81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LP-ASLKHLDVDNNQLTM-LPE---LPALLEYINADN 149 (571)
T ss_dssp TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CC-TTCCEEECCSSCCSC-CCC---CCTTCCEEECCS
T ss_pred CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hh-cCCCEEECCCCcCCC-CCC---cCccccEEeCCC
Confidence 4778888888887 566 457888888888888885 776 44 388888888888885 676 567888888888
Q ss_pred CcCcccCchhhhhcccCCceeeccc----------cccceEECCCCcccccccc---cc-------cccccccccc----
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSV----------VYICCIRRGRNDYDFGLPQ---DL-------MSLSAKRNRY---- 560 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl----------~~L~~L~L~~N~l~~~~p~---~L-------~~L~l~~N~i---- 560 (587)
|+|++ +|. ...+|+.|+|+. .+|+.|+|++|+|+ .+|. +| +.|+|++|+|
T Consensus 150 N~l~~-lp~----~l~~L~~L~Ls~N~L~~lp~l~~~L~~L~Ls~N~L~-~lp~~~~~L~~~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 150 NQLTM-LPE----LPTSLEVLSVRNNQLTFLPELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITHIP 223 (571)
T ss_dssp SCCSC-CCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCCCC--------CCEEEECCSSCCCCCC
T ss_pred CccCc-CCC----cCCCcCEEECCCCCCCCcchhhCCCCEEECcCCCCC-chhhHHHhhhcccccceEEecCCCcceecC
Confidence 88874 665 234677787773 35888999999988 5554 67 8899999987
Q ss_pred ---CCCCCCcEEEccCCCCCC
Q 007860 561 ---QRQKSLMLLEMESQHAKG 578 (587)
Q Consensus 561 ---~~l~~L~~L~Ls~N~l~~ 578 (587)
..+++|+.|+|++|+|++
T Consensus 224 ~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 224 ENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp GGGGGSCTTEEEECCSSSCCH
T ss_pred HHHhcCCCCCEEEeeCCcCCC
Confidence 347789999999999976
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.40 E-value=2.5e-13 Score=135.21 Aligned_cols=139 Identities=19% Similarity=0.277 Sum_probs=109.0
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+..|+.|++++|+++. ++ .+..+++|+.|+|++|++++ +|+ +.. ++|++|+|++|++++ +|.. .. ++|+.|+
T Consensus 40 l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~-~~~-l~~l~~L~~L~L~~N~l~~-l~~~-~~-~~L~~L~ 112 (263)
T 1xeu_A 40 LSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISD-LSP-LKDLTKLEELSVNRNRLKN-LNGI-PS-ACLSRLF 112 (263)
T ss_dssp HTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCSSCCEEECCSSCCSC-CTTC-CC-SSCCEEE
T ss_pred cCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCC-Chh-hccCCCCCEEECCCCccCC-cCcc-cc-CcccEEE
Confidence 3468899999999984 55 78999999999999999995 454 777 999999999999994 6653 33 8999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEc
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEM 571 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~L 571 (587)
|++|++++ ++ .+..+ .+|+.|+|++|++++. -.+.|+.|++++|+| ..+++|+.|+|
T Consensus 113 L~~N~l~~-~~-~l~~l-----------~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 113 LDNNELRD-TD-SLIHL-----------KNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179 (263)
T ss_dssp CCSSCCSB-SG-GGTTC-----------TTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCCCEEEE
T ss_pred ccCCccCC-Ch-hhcCc-----------ccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCCCEEeC
Confidence 99999985 54 34443 3466667777777632 125677888888877 56778999999
Q ss_pred cCCCCCCCCC
Q 007860 572 ESQHAKGLPT 581 (587)
Q Consensus 572 s~N~l~~~P~ 581 (587)
++|+++..|.
T Consensus 180 ~~N~~~~~~~ 189 (263)
T 1xeu_A 180 TGQKCVNEPV 189 (263)
T ss_dssp EEEEEECCCE
T ss_pred CCCcccCCcc
Confidence 9999988774
No 98
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=2.2e-12 Score=124.79 Aligned_cols=133 Identities=17% Similarity=0.216 Sum_probs=106.6
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
+.+++++|.++ .+|..+. ..++.|+|++|.+++..|.. +.. ++|+.|+|++|++++..|..+..+++|+.|+|++
T Consensus 14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 46999999998 4676553 45789999999999765654 566 9999999999999977777899999999999999
Q ss_pred CcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
|++++..+..+..+ .+|+.|+|++|++++..|.. |.++.+|+.|+|++|+|++++...
T Consensus 91 N~l~~~~~~~~~~l-----------~~L~~L~Ls~N~l~~~~~~~----------~~~l~~L~~L~L~~N~l~~~~~~~ 148 (220)
T 2v70_A 91 NRLENVQHKMFKGL-----------ESLKTLMLRSNRITCVGNDS----------FIGLSSVRLLSLYDNQITTVAPGA 148 (220)
T ss_dssp SCCCCCCGGGGTTC-----------SSCCEEECTTSCCCCBCTTS----------STTCTTCSEEECTTSCCCCBCTTT
T ss_pred CccCccCHhHhcCC-----------cCCCEEECCCCcCCeECHhH----------cCCCccCCEEECCCCcCCEECHHH
Confidence 99996444445443 35778888899998654543 456779999999999999996543
No 99
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.40 E-value=1.1e-13 Score=157.44 Aligned_cols=130 Identities=24% Similarity=0.281 Sum_probs=74.3
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..|+.|+|++|.+. .+|..+..|++|+.|+|++|.|+ .+|..++. ++|++|+|++|+|+ .+|..++.|++|+.|+|
T Consensus 224 ~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 34566666666665 55555666666666666666666 66666655 66666666666666 56666666666666666
Q ss_pred cCCcCcccCchhhhhcccCCceeeccccccc---------------eEECCCCcccccccccccccccccc
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYIC---------------CIRRGRNDYDFGLPQDLMSLSAKRN 558 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~---------------~L~L~~N~l~~~~p~~L~~L~l~~N 558 (587)
++|.|+ .+|..++.+. +|+.|+|+.+.|. .|+|++|.+++.+|..|+.|++++|
T Consensus 301 ~~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLC-NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp CSSCCC-CCCSSTTSCT-TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------
T ss_pred CCCCCC-ccChhhhcCC-CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccccceeEeecc
Confidence 666665 5666555544 3444444422211 2456677777777777777777766
No 100
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.40 E-value=1e-12 Score=144.94 Aligned_cols=148 Identities=16% Similarity=0.138 Sum_probs=107.8
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..++.|+|++|.+++..+..|.++++|+.|+|++|++++..|..+.. ++|++|+|++|++++..|..++.+++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 45888999999999888888999999999999999999766777888 99999999999999777788999999999999
Q ss_pred cCCcCcccCch-hhhhcccCCceeeccccccceEECCCCcccc-ccc------cccccccccccccC--------CCCCC
Q 007860 503 NNNLLEGRVPE-ELYSIGVHGGAFDLSVVYICCIRRGRNDYDF-GLP------QDLMSLSAKRNRYQ--------RQKSL 566 (587)
Q Consensus 503 s~N~l~g~ip~-~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~-~~p------~~L~~L~l~~N~i~--------~l~~L 566 (587)
++|++.+ ++. .++.+. +|++|+|++|.+++ .+| ++|+.|++++|++. .+.+|
T Consensus 108 ~~n~l~~-l~~~~~~~l~-----------~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 108 VETNLAS-LENFPIGHLK-----------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp TTSCCCC-STTCSCTTCT-----------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccc-CCCccccccc-----------cccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhcc
Confidence 9999984 443 344433 35555555665543 233 34555566666552 22334
Q ss_pred ----cEEEccCCCCCCCCCCC
Q 007860 567 ----MLLEMESQHAKGLPTLP 583 (587)
Q Consensus 567 ----~~L~Ls~N~l~~~P~~~ 583 (587)
+.|++++|++++++...
T Consensus 176 ~~~~~~L~l~~n~l~~~~~~~ 196 (570)
T 2z63_A 176 PLLNLSLDLSLNPMNFIQPGA 196 (570)
T ss_dssp TTCCCEEECTTCCCCEECTTT
T ss_pred chhhhhcccCCCCceecCHHH
Confidence 56777777776665543
No 101
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=3.9e-13 Score=121.41 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=103.0
Q ss_pred eeEEEEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 424 VVISQIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 424 ~~l~~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
..++.|++++|.++ +.+|..+..+++|+.|++++|.+++. ..+.. ++|++|++++|++++.+|..++.+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45888999999998 88999999999999999999999965 67777 9999999999999987898888899999999
Q ss_pred ccCCcCcccCc--hhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccC
Q 007860 502 LNNNLLEGRVP--EELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMES 573 (587)
Q Consensus 502 Ls~N~l~g~ip--~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~ 573 (587)
+++|++++ +| ..+.. +.+|++|++++|++++ +|.- ....+..+++|+.|++++
T Consensus 95 ls~N~i~~-~~~~~~~~~-----------l~~L~~L~l~~N~l~~-~~~~------~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKD-LSTIEPLKK-----------LENLKSLDLFNCEVTN-LNDY------RENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCS-HHHHGGGGG-----------CTTCCEEECTTCGGGG-STTH------HHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCC-hHHHHHHhh-----------CCCCCEEeCcCCcccc-hHHH------HHHHHHHCCCcccccCCC
Confidence 99999985 33 44444 3457888899999984 3320 001234566888888763
No 102
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.39 E-value=2.1e-13 Score=139.53 Aligned_cols=149 Identities=21% Similarity=0.164 Sum_probs=121.4
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
++.|+.|+|++|.+++..|..+..+++|+.|+|++|.+++..| +.. ++|++|++++|++++ +| .+++|+.|+
T Consensus 33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~-l~----~~~~L~~L~ 105 (317)
T 3o53_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (317)
T ss_dssp GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccc-cc----CCCCcCEEE
Confidence 3468999999999999888999999999999999999996554 777 999999999999984 33 337888999
Q ss_pred ccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCCCccccccc-------ccccccccccccc
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGRNDYDFGLP-------QDLMSLSAKRNRY 560 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~N~l~~~~p-------~~L~~L~l~~N~i 560 (587)
+++|++++..+.. ..+|+.|+++ +.+|+.|+|++|++++..| +.|+.|++++|+|
T Consensus 106 l~~n~l~~~~~~~----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 181 (317)
T 3o53_A 106 AANNNISRVSCSR----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (317)
T ss_dssp CCSSCCSEEEECC----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CCCCccCCcCccc----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence 9999888543332 2357777776 4678999999999875322 5688889999988
Q ss_pred ------CCCCCCcEEEccCCCCCCCCCC
Q 007860 561 ------QRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 561 ------~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
..+++|+.|+|++|+|+++|..
T Consensus 182 ~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 209 (317)
T 3o53_A 182 YDVKGQVVFAKLKTLDLSSNKLAFMGPE 209 (317)
T ss_dssp CEEECCCCCTTCCEEECCSSCCCEECGG
T ss_pred cccccccccccCCEEECCCCcCCcchhh
Confidence 3488999999999999998764
No 103
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.38 E-value=1.7e-12 Score=140.02 Aligned_cols=152 Identities=22% Similarity=0.250 Sum_probs=109.9
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
++.|+.|++++|.+.+. +.+..+++|+.|++++|.+++..| +.. ++|+.|++++|++++ +|. +..+++|+.|+
T Consensus 220 l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~ 293 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN-ISP-LAGLTALTNLE 293 (466)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEE
T ss_pred cCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc-ccc-ccCCCccCeEE
Confidence 34577888888888753 457788888888888888885444 566 888888888888885 343 77888888888
Q ss_pred ccCCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccc----ccccccccccccccc-----
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY----- 560 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i----- 560 (587)
+++|++.+ ++. +..+. +|+.|+++ +.+|+.|++++|++++. -.+.|+.|++++|++
T Consensus 294 L~~n~l~~-~~~-~~~l~-~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~ 370 (466)
T 1o6v_A 294 LNENQLED-ISP-ISNLK-NLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP 370 (466)
T ss_dssp CCSSCCSC-CGG-GGGCT-TCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG
T ss_pred cCCCcccC-chh-hcCCC-CCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch
Confidence 88888875 443 55544 57777776 45677888888877642 114577777888876
Q ss_pred -CCCCCCcEEEccCCCCCCCCCCC
Q 007860 561 -QRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 561 -~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
..+++|+.|++++|+++++|...
T Consensus 371 ~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp GTTCTTCCEEECCCEEEECCCBCC
T ss_pred hhcCCCCCEEeccCCcccCCchhh
Confidence 45677888888888888877543
No 104
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=2.9e-12 Score=121.33 Aligned_cols=126 Identities=20% Similarity=0.317 Sum_probs=99.3
Q ss_pred EEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCC
Q 007860 427 SQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNN 505 (587)
Q Consensus 427 ~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N 505 (587)
+.+++++|+++ .+|..+. ++|+.|+|++|.++ .+|..+.. ++|+.|+|++|++++..|..|..+++|+.|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46899999998 5676553 68999999999999 88988888 99999999999999777788999999999999999
Q ss_pred cCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860 506 LLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK 577 (587)
Q Consensus 506 ~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~ 577 (587)
+|++..|..+..+ .+|+.|+|++|+++ .+|.. .|..+.+|+.|+|++|.+.
T Consensus 89 ~l~~i~~~~f~~l-----------~~L~~L~L~~N~l~-~~~~~---------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGL-----------KSLRLLSLHGNDIS-VVPEG---------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTC-----------TTCCEEECCSSCCC-BCCTT---------TTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCC-----------CCCCEEECCCCCCC-eeChh---------hhhcCccccEEEeCCCCee
Confidence 9996544445543 35778888899988 44432 1344556667777766654
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.37 E-value=3.6e-13 Score=146.22 Aligned_cols=190 Identities=17% Similarity=0.106 Sum_probs=124.0
Q ss_pred eeeEeecCCccEEEEEcccchhhhhhcccccccccCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCcCcccee
Q 007860 335 HYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGIT 414 (587)
Q Consensus 335 ~l~~l~l~~n~L~~~l~~~~~s~~Ln~lei~~~~~~~~~~~p~~~~aL~~lk~~~~~~~~~~w~g~pc~~~~~~~~~gv~ 414 (587)
.+..+++++|.+++..+ .+. +..++.+.+..+.+..+|.. ..++.. +.. .|.+.++.
T Consensus 59 ~L~~L~Ls~N~l~~~~~--l~~--l~~L~~L~Ls~N~l~~l~~~----~~L~~L-------~L~--------~N~l~~~~ 115 (487)
T 3oja_A 59 KLELLNLSSNVLYETLD--LES--LSTLRTLDLNNNYVQELLVG----PSIETL-------HAA--------NNNISRVS 115 (487)
T ss_dssp TCCEEECTTSCCEEEEE--CTT--CTTCCEEECCSSEEEEEEEC----TTCCEE-------ECC--------SSCCCCEE
T ss_pred CCCEEEeeCCCCCCCcc--ccc--CCCCCEEEecCCcCCCCCCC----CCcCEE-------ECc--------CCcCCCCC
Confidence 56667777777765443 333 55666666666655444421 111110 000 02445555
Q ss_pred ecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC-C-CCccEEeccCCcCCccCCcccc
Q 007860 415 CHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG-Q-QSLVRLDLSDNQFTGSIPDSLT 492 (587)
Q Consensus 415 c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~-~-~~L~~L~Ls~N~l~g~iP~~l~ 492 (587)
|.. ++.|+.|+|++|.+++..|..++.+++|+.|+|++|.+++..|..+. . ++|+.|+|++|.+++. |. +.
T Consensus 116 ~~~-----l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~ 188 (487)
T 3oja_A 116 CSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QV 188 (487)
T ss_dssp ECC-----CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CC
T ss_pred ccc-----cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cc
Confidence 532 24578888888888888888888888888888888888887777776 4 8888888888888855 33 44
Q ss_pred CCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEcc
Q 007860 493 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEME 572 (587)
Q Consensus 493 ~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls 572 (587)
.+++|+.|+|++|.+++ +|+.+..+. +|+.|+|++|.++ .+|.. +..+++|+.|+|+
T Consensus 189 ~l~~L~~L~Ls~N~l~~-~~~~~~~l~-----------~L~~L~Ls~N~l~-~lp~~----------l~~l~~L~~L~l~ 245 (487)
T 3oja_A 189 VFAKLKTLDLSSNKLAF-MGPEFQSAA-----------GVTWISLRNNKLV-LIEKA----------LRFSQNLEHFDLR 245 (487)
T ss_dssp CCTTCCEEECCSSCCCE-ECGGGGGGT-----------TCSEEECTTSCCC-EECTT----------CCCCTTCCEEECT
T ss_pred cCCCCCEEECCCCCCCC-CCHhHcCCC-----------CccEEEecCCcCc-ccchh----------hccCCCCCEEEcC
Confidence 68888888888888885 555555433 4666777777777 35543 2344567777777
Q ss_pred CCCCC
Q 007860 573 SQHAK 577 (587)
Q Consensus 573 ~N~l~ 577 (587)
+|.+.
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 77665
No 106
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.36 E-value=3.6e-12 Score=141.97 Aligned_cols=87 Identities=24% Similarity=0.299 Sum_probs=50.9
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|+|++|.|+ .+|. .+++|+.|+|++|+++ .+|. . ++|++|+|++|+++ .+|. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECC
Confidence 4666777777776 3444 4567777777777776 4555 3 66777777777766 3444 34555556666
Q ss_pred CCcCcccCchhhhhcccCCceeecc
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLS 528 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Ls 528 (587)
+|+++ .+|..+ .+|+.|+|+
T Consensus 130 ~N~l~-~lp~~l----~~L~~L~Ls 149 (622)
T 3g06_A 130 GNQLT-SLPVLP----PGLQELSVS 149 (622)
T ss_dssp SSCCS-CCCCCC----TTCCEEECC
T ss_pred CCCCC-cCCCCC----CCCCEEECc
Confidence 55555 244322 234555444
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.35 E-value=2.7e-12 Score=138.42 Aligned_cols=129 Identities=19% Similarity=0.292 Sum_probs=70.5
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.|++++|.+.+..+ +..+++|+.|++++|.+++. +. +.. ++|+.|++++|++++. +. ++.+++|+.|+++
T Consensus 244 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L~~L~L~ 317 (466)
T 1o6v_A 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-SP-LAGLTALTNLELNENQLEDI-SP-ISNLKNLTYLTLY 317 (466)
T ss_dssp TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-GG-GTTCTTCSEEECCSSCCSCC-GG-GGGCTTCSEEECC
T ss_pred CCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcc-cc-ccCCCccCeEEcCCCcccCc-hh-hcCCCCCCEEECc
Confidence 45566666666654433 55666666666666666632 22 444 6666666666666643 22 5556666666666
Q ss_pred CCcCcccCchhhhhcccCCceeecc------------ccccceEECCCCccccccc----cccccccccccccCC
Q 007860 504 NNLLEGRVPEELYSIGVHGGAFDLS------------VVYICCIRRGRNDYDFGLP----QDLMSLSAKRNRYQR 562 (587)
Q Consensus 504 ~N~l~g~ip~~l~~~~~~L~~l~Ls------------l~~L~~L~L~~N~l~~~~p----~~L~~L~l~~N~i~~ 562 (587)
+|++++..| +..+. +|+.|+++ +.+|+.|++++|++++..| +.|+.|++++|++.+
T Consensus 318 ~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 318 FNNISDISP--VSSLT-KLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp SSCCSCCGG--GGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred CCcCCCchh--hccCc-cCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 666654333 33333 45555555 3455666666666654433 345555566665543
No 108
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.34 E-value=1e-11 Score=115.46 Aligned_cols=130 Identities=21% Similarity=0.272 Sum_probs=101.5
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
.+.++++++++. .+|..+ .++|+.|++++|.+++..+..+.. ++|++|+|++|++++..+..++.+++|+.|+|++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 356899999998 456544 379999999999999655556677 9999999999999966666689999999999999
Q ss_pred CcCcccCchh-hhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCC
Q 007860 505 NLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 505 N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P 580 (587)
|++++ +|.. +.. +.+|+.|+|++|+++ .+|.. .+..+++|+.|+|++|++.+.+
T Consensus 86 N~l~~-~~~~~~~~-----------l~~L~~L~l~~N~l~-~~~~~---------~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQS-LPNGVFDK-----------LTQLKELALDTNQLK-SVPDG---------IFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCC-CCTTTTTT-----------CTTCCEEECCSSCCS-CCCTT---------TTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccc-cCHHHhhC-----------CcccCEEECcCCcce-EeCHH---------HhcCCcccCEEEecCCCeeccC
Confidence 99995 5543 343 335778888899988 45543 1455778899999999887654
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=5.3e-13 Score=151.80 Aligned_cols=145 Identities=19% Similarity=0.188 Sum_probs=101.1
Q ss_pred EEEEEcCCCCCcc---------cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCC
Q 007860 426 ISQIDLGSQGLKG---------YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS 495 (587)
Q Consensus 426 l~~L~L~~n~l~g---------~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~ 495 (587)
++.++|+.|.|.+ .++..+..++.|+.|+|++|.+. .+|..+.. ++|++|+|++|+|+ .+|..++.|+
T Consensus 193 l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 270 (727)
T 4b8c_D 193 LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLS 270 (727)
T ss_dssp -----------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGT
T ss_pred hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCC
Confidence 4445555555443 45778999999999999999999 89988888 99999999999999 9999999999
Q ss_pred CCCEEEccCCcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccccccccccc-------ccc
Q 007860 496 KLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDFGLPQDLMS-------LSA 555 (587)
Q Consensus 496 ~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~~~p~~L~~-------L~l 555 (587)
+|+.|+|++|+|+ .+|..++.+. +|+.|+|+ +.+|+.|+|++|+|++.+|..+.. |+|
T Consensus 271 ~L~~L~Ls~N~l~-~lp~~~~~l~-~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l 348 (727)
T 4b8c_D 271 NLRVLDLSHNRLT-SLPAELGSCF-QLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYL 348 (727)
T ss_dssp TCCEEECTTSCCS-SCCSSGGGGT-TCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEeCcCCcCC-ccChhhcCCC-CCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhh
Confidence 9999999999999 8999998877 59999888 677889999999998877755433 457
Q ss_pred cccccCC--CCCCcEEEccCC
Q 007860 556 KRNRYQR--QKSLMLLEMESQ 574 (587)
Q Consensus 556 ~~N~i~~--l~~L~~L~Ls~N 574 (587)
++|.+.+ ...|+.|++++|
T Consensus 349 ~~N~l~~~~p~~l~~l~l~~n 369 (727)
T 4b8c_D 349 RDNRPEIPLPHERRFIEINTD 369 (727)
T ss_dssp HHCCCCCCCCCC---------
T ss_pred ccCcccCcCccccceeEeecc
Confidence 7888743 456778888877
No 110
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.33 E-value=6.9e-12 Score=139.65 Aligned_cols=78 Identities=26% Similarity=0.404 Sum_probs=61.7
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
++.|+.|+|++|.|++ +|. .+++|++|+|++|.++ .+|. . ++|+.|++++|+++ .+|.. +++|++|+
T Consensus 80 l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~ 147 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELS 147 (622)
T ss_dssp CTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEE
T ss_pred CCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEE
Confidence 4568999999999984 555 7899999999999998 5665 4 78888999999888 46764 37788888
Q ss_pred ccCCcCcccCch
Q 007860 502 LNNNLLEGRVPE 513 (587)
Q Consensus 502 Ls~N~l~g~ip~ 513 (587)
|++|++++ +|.
T Consensus 148 Ls~N~l~~-l~~ 158 (622)
T 3g06_A 148 VSDNQLAS-LPA 158 (622)
T ss_dssp CCSSCCSC-CCC
T ss_pred CcCCcCCC-cCC
Confidence 88888873 443
No 111
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.33 E-value=3.9e-12 Score=141.62 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=110.4
Q ss_pred EEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcC
Q 007860 429 IDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLL 507 (587)
Q Consensus 429 L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l 507 (587)
.+-++.+++ .+|..+. +++++|||++|+|++..|..+.. ++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 36 ~~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 466667777 5676542 47999999999999666677888 9999999999999976677899999999999999999
Q ss_pred cccCchh-hhhcccCCceeeccccccceEECCCCccccccc------ccccccccccccc---------CCCCCCcEEEc
Q 007860 508 EGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLP------QDLMSLSAKRNRY---------QRQKSLMLLEM 571 (587)
Q Consensus 508 ~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p------~~L~~L~l~~N~i---------~~l~~L~~L~L 571 (587)
++ +|.. +..+ .+|++|+|++|++++..+ ++|+.|++++|+| ..+..|+.|+|
T Consensus 113 ~~-l~~~~f~~L-----------~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 113 QS-LALGAFSGL-----------SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CE-ECGGGGTTC-----------TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred CC-CCHHHhcCC-----------CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 84 6654 4443 346677777888774222 4688889999987 45789999999
Q ss_pred cCCCCCCCCCC
Q 007860 572 ESQHAKGLPTL 582 (587)
Q Consensus 572 s~N~l~~~P~~ 582 (587)
++|+|++++..
T Consensus 181 ~~N~l~~~~~~ 191 (635)
T 4g8a_A 181 SSNKIQSIYCT 191 (635)
T ss_dssp CSSCCCEECGG
T ss_pred cCccccccccc
Confidence 99999988653
No 112
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=4.4e-12 Score=117.56 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=53.7
Q ss_pred CCCCCCcCccceeecCCCCCC-----ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccE
Q 007860 402 CAPTNWDAWEGITCHPNKDET-----AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVR 475 (587)
Q Consensus 402 c~~~~~~~~~gv~c~~~~~~~-----~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~ 475 (587)
|...|.|.|..+.|....... ...++.|+|++|.|++..|..|..+++|+.|+|++|+|++..+..+.. ++|++
T Consensus 3 CP~~C~C~~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 3 CPSQCSCSGTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp CC-CCEEETTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CcCcCCcCCCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 555555666666665433211 123455555555555555555555555555555555555332223334 55555
Q ss_pred EeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860 476 LDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 476 L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 508 (587)
|+|++|+|++..+..+..+++|+.|+|++|++.
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 555555555333334555555555555555554
No 113
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=9.1e-13 Score=137.37 Aligned_cols=148 Identities=21% Similarity=0.218 Sum_probs=100.0
Q ss_pred eEEEEEcCCCCCcccCc----hhhcCCC-CCCEEEccCCCCCCCCCCCCCC------CCccEEeccCCcCCccCCcccc-
Q 007860 425 VISQIDLGSQGLKGYIS----DKISLLS-NLVNLNLSTNSLGGTLPSGLGQ------QSLVRLDLSDNQFTGSIPDSLT- 492 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p----~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~------~~L~~L~Ls~N~l~g~iP~~l~- 492 (587)
.|+.|+|++|.+++..+ ..+..++ +|+.|+|++|.+++..+..+.. ++|++|+|++|++++..+..++
T Consensus 23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 102 (362)
T 3goz_A 23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVK 102 (362)
T ss_dssp TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHH
Confidence 36677777777776555 5666676 7777777777777555544433 5677777777777755554333
Q ss_pred ---CC-CCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc-----------ccccccccccccc
Q 007860 493 ---SS-SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF-----------GLPQDLMSLSAKR 557 (587)
Q Consensus 493 ---~l-~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~-----------~~p~~L~~L~l~~ 557 (587)
.+ ++|+.|+|++|++++..+..+......+ ..+|++|+|++|++.. ..|..|+.|+|++
T Consensus 103 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~------~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 103 TLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL------PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTS------CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred HHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhC------CCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 33 6777777777777654444444432100 1368888999998873 2345899999999
Q ss_pred cccC------------CC-CCCcEEEccCCCCCC
Q 007860 558 NRYQ------------RQ-KSLMLLEMESQHAKG 578 (587)
Q Consensus 558 N~i~------------~l-~~L~~L~Ls~N~l~~ 578 (587)
|+|+ .. ++|+.|+|++|+|+.
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCCh
Confidence 9883 22 599999999999987
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=3e-12 Score=133.43 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=101.4
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
..|+.|+|++|.|++..+..|..+++|+.|+|++|+|++..+..+.. ++|++|+|++|++++..|..|..+++|+.|+|
T Consensus 64 ~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 64 TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 45889999999999888888999999999999999999666666777 99999999999999877889999999999999
Q ss_pred cCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccccccc---------cccccccccccc
Q 007860 503 NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQ---------DLMSLSAKRNRY 560 (587)
Q Consensus 503 s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~---------~L~~L~l~~N~i 560 (587)
++|+|+ .+|..++..... +.+|+.|+|++|+|+ .+|. .++.|+|++|.+
T Consensus 144 ~~N~l~-~l~~~~~~~~~~-------l~~L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 144 SQNQIS-RFPVELIKDGNK-------LPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp CSSCCC-SCCGGGTC-----------CTTCCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred CCCcCC-eeCHHHhcCccc-------CCcCCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCc
Confidence 999999 577765421000 345677777788887 4442 135566777765
No 115
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.31 E-value=5.6e-13 Score=140.06 Aligned_cols=155 Identities=16% Similarity=0.170 Sum_probs=115.9
Q ss_pred ceeEEEEEcCCC---CCcccCchhh-------cCCCCCCEEEccCCCCCC----CCCCCCCC-CCccEEeccCCcCCccC
Q 007860 423 AVVISQIDLGSQ---GLKGYISDKI-------SLLSNLVNLNLSTNSLGG----TLPSGLGQ-QSLVRLDLSDNQFTGSI 487 (587)
Q Consensus 423 ~~~l~~L~L~~n---~l~g~~p~~l-------~~l~~L~~L~Ls~N~l~g----~ip~~~~~-~~L~~L~Ls~N~l~g~i 487 (587)
++.|+.|+|++| .+.+.+|..+ ..+++|+.|+|++|.+++ .+|..+.. ++|++|+|++|++++..
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~ 138 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQA 138 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHH
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHH
Confidence 456888999885 5566677665 688999999999999986 36667766 89999999999987443
Q ss_pred Ccccc----CC---------CCCCEEEccCCcCc-ccCc---hhhhhcccCCceeecc-------------------ccc
Q 007860 488 PDSLT----SS---------SKLQLVLLNNNLLE-GRVP---EELYSIGVHGGAFDLS-------------------VVY 531 (587)
Q Consensus 488 P~~l~----~l---------~~L~~L~Ls~N~l~-g~ip---~~l~~~~~~L~~l~Ls-------------------l~~ 531 (587)
+..+. .+ ++|++|+|++|++. +.+| ..+..+. +|+.|+|+ +.+
T Consensus 139 ~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~ 217 (386)
T 2ca6_A 139 GAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT-TCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred HHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC-CcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence 43333 33 88999999999997 4455 3444544 58888776 357
Q ss_pred cceEECCCCccc----cccc------cccccccccccccC--------------CCCCCcEEEccCCCCCC
Q 007860 532 ICCIRRGRNDYD----FGLP------QDLMSLSAKRNRYQ--------------RQKSLMLLEMESQHAKG 578 (587)
Q Consensus 532 L~~L~L~~N~l~----~~~p------~~L~~L~l~~N~i~--------------~l~~L~~L~Ls~N~l~~ 578 (587)
|+.|+|++|.++ ..+| +.|+.|+|++|+|. .+++|+.|+|++|+|+.
T Consensus 218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 888999999885 2333 46888889988872 27889999999998887
No 116
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.30 E-value=1.1e-12 Score=134.62 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=109.1
Q ss_pred eeEEEEEcCCCCCccc-CchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCC-cCCc-cCCccccCCCCCCE
Q 007860 424 VVISQIDLGSQGLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDN-QFTG-SIPDSLTSSSKLQL 499 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N-~l~g-~iP~~l~~l~~L~~ 499 (587)
.+|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++..|..++. ++|++|+|++| .+++ .+|..+..+++|+.
T Consensus 93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~ 172 (336)
T 2ast_B 93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172 (336)
T ss_dssp BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence 5678888888888765 7777888888888888888888777777777 88888888888 6765 36666777888888
Q ss_pred EEccCC-cCccc-CchhhhhcccCCceeecc-----------------ccccceEECCCCc-cccccc------cccccc
Q 007860 500 VLLNNN-LLEGR-VPEELYSIGVHGGAFDLS-----------------VVYICCIRRGRND-YDFGLP------QDLMSL 553 (587)
Q Consensus 500 L~Ls~N-~l~g~-ip~~l~~~~~~L~~l~Ls-----------------l~~L~~L~L~~N~-l~~~~p------~~L~~L 553 (587)
|++++| .+++. ++..+..+..+|+.|+++ +.+|+.|+|++|. +++..+ +.|+.|
T Consensus 173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L 252 (336)
T 2ast_B 173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252 (336)
T ss_dssp EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence 888888 77743 455555555357777665 4467888888887 543322 456777
Q ss_pred cccccc---------cCCCCCCcEEEccCC
Q 007860 554 SAKRNR---------YQRQKSLMLLEMESQ 574 (587)
Q Consensus 554 ~l~~N~---------i~~l~~L~~L~Ls~N 574 (587)
++++|. +..+++|+.|+|++|
T Consensus 253 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 253 SLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred eCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 777772 356777888887777
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=4.8e-12 Score=120.06 Aligned_cols=126 Identities=19% Similarity=0.093 Sum_probs=99.4
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+++|+.|++++|.+. .++.+..+++|+.|++++|.+++..|..++. ++|++|++++|++++..|..++.+++|+.|+
T Consensus 65 l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~ 142 (197)
T 4ezg_A 65 AHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142 (197)
T ss_dssp CTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEE
T ss_pred CCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEE
Confidence 346889999999775 3458999999999999999999888889998 9999999999999988899999999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----cccccccccccccccCC
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRYQR 562 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i~~ 562 (587)
+++|++.+.+| .+..+ .+|+.|+|++|+++.. -.+.|+.|++++|+|++
T Consensus 143 L~~n~~i~~~~-~l~~l-----------~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 143 LSYNGAITDIM-PLKTL-----------PELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCSCTBCCCCG-GGGGC-----------SSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC----
T ss_pred ccCCCCccccH-hhcCC-----------CCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccCC
Confidence 99998333676 45443 3466677777777631 12568888999999864
No 118
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.27 E-value=1.5e-11 Score=124.12 Aligned_cols=142 Identities=23% Similarity=0.247 Sum_probs=114.9
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+..|+.|++++|.+... + .+..+++|+.|+|++|++++ +++ +.. ++|++|++++|++++ +|. +..+++|+.|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVKD-LSS-LKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-GGG-GTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCC-Ccc-cccCCCCCEEECCCCcCCC-Chh-hccCCCCCEEE
Confidence 45689999999999854 3 58999999999999999995 444 777 999999999999984 554 89999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEc
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEM 571 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~L 571 (587)
+++|++.+ ++ .+.. +.+|+.|+|++|++++. -.++|+.|++++|+| ..+++|+.|+|
T Consensus 119 L~~n~i~~-~~-~l~~-----------l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 119 LEHNGISD-IN-GLVH-----------LPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 185 (291)
T ss_dssp CTTSCCCC-CG-GGGG-----------CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred CCCCcCCC-Ch-hhcC-----------CCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEEC
Confidence 99999985 43 3444 33566777778877642 125789999999987 56789999999
Q ss_pred cCCCCCCCCCCC
Q 007860 572 ESQHAKGLPTLP 583 (587)
Q Consensus 572 s~N~l~~~P~~~ 583 (587)
++|+|+.+|...
T Consensus 186 ~~N~i~~l~~l~ 197 (291)
T 1h6t_A 186 SKNHISDLRALA 197 (291)
T ss_dssp CSSCCCBCGGGT
T ss_pred CCCcCCCChhhc
Confidence 999999987643
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=7.3e-12 Score=138.23 Aligned_cols=123 Identities=23% Similarity=0.237 Sum_probs=98.2
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
|+.|+|++|.|++ +|. ++.|++|+.|+|++|.|+ .+|..++. ++|+.|+|++|+|++ +| .++.+++|+.|+|++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 6779999999986 665 999999999999999999 88998888 999999999999995 77 799999999999999
Q ss_pred CcCcccC-chhhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEc
Q 007860 505 NLLEGRV-PEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEM 571 (587)
Q Consensus 505 N~l~g~i-p~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~L 571 (587)
|+|++.. |..++.+. +|+.|+|++|++++ +|+.+..+ +..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~-----------~L~~L~L~~N~l~~-~~~~~~~l------~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCP-----------RLVLLNLQGNSLCQ-EEGIQERL------AEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCT-----------TCCEEECTTSGGGG-SSSCTTHH------HHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCC-----------CCCEEEecCCcCCC-CccHHHHH------HHHCcccCccCC
Confidence 9999755 88777644 47788888999985 44332221 233567777764
No 120
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.27 E-value=2.2e-11 Score=113.26 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=57.7
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCc
Q 007860 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL 506 (587)
Q Consensus 428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~ 506 (587)
.+++++|++. .+|..+. ++|+.|+|++|+|++..|..+.. ++|++|+|++|+|++..+..+..+++|+.|+|++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 3566666664 4554443 56666666666666555555655 666666666666664333334566666666666666
Q ss_pred CcccCchh-hhhcccCCceeeccccccceEECCCCccc
Q 007860 507 LEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYD 543 (587)
Q Consensus 507 l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~ 543 (587)
|+ .+|.. +..+ .+|+.|+|++|++.
T Consensus 93 l~-~l~~~~~~~l-----------~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LK-SIPRGAFDNL-----------KSLTHIYLYNNPWD 118 (174)
T ss_dssp CC-CCCTTTTTTC-----------TTCSEEECCSSCBC
T ss_pred cc-eeCHHHhccc-----------cCCCEEEeCCCCcc
Confidence 66 34433 3322 23455556666665
No 121
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.26 E-value=1.1e-12 Score=137.87 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=127.4
Q ss_pred ceeEEEEEcCCCCCcc----cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC--------------CCccEEeccCCcCC
Q 007860 423 AVVISQIDLGSQGLKG----YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ--------------QSLVRLDLSDNQFT 484 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--------------~~L~~L~Ls~N~l~ 484 (587)
++.|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+++..+..+.. ++|++|+|++|+++
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 3568999999999997 58889999999999999999997443333332 58999999999998
Q ss_pred -ccCC---ccccCCCCCCEEEccCCcCc--c---cCchhhhhcccCCceeecc------------------ccccceEEC
Q 007860 485 -GSIP---DSLTSSSKLQLVLLNNNLLE--G---RVPEELYSIGVHGGAFDLS------------------VVYICCIRR 537 (587)
Q Consensus 485 -g~iP---~~l~~l~~L~~L~Ls~N~l~--g---~ip~~l~~~~~~L~~l~Ls------------------l~~L~~L~L 537 (587)
+.+| ..+..+++|+.|+|++|++. | .+|..+..+. +|+.|+|+ +.+|++|+|
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~-~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ-ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT-TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC-CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEEC
Confidence 5566 46778899999999999997 2 2333555554 69999887 468999999
Q ss_pred CCCccccc----c--------ccccccccccccccCC-------------CCCCcEEEccCCCCCCCC
Q 007860 538 GRNDYDFG----L--------PQDLMSLSAKRNRYQR-------------QKSLMLLEMESQHAKGLP 580 (587)
Q Consensus 538 ~~N~l~~~----~--------p~~L~~L~l~~N~i~~-------------l~~L~~L~Ls~N~l~~~P 580 (587)
++|++.+. + .+.|+.|+|++|+|.. +++|+.|+|++|++++..
T Consensus 252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 99999753 1 3568999999999976 689999999999998765
No 122
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.24 E-value=1e-11 Score=115.55 Aligned_cols=130 Identities=15% Similarity=0.133 Sum_probs=97.2
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCC-CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLS-NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~-~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
..++.|+|++|.++. +|. +..+. +|+.|+|++|.+++. +.+.. ++|++|+|++|++++..|..+..+++|+.|+
T Consensus 19 ~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 358899999999984 554 55555 999999999999954 57777 9999999999999954334458999999999
Q ss_pred ccCCcCcccCch--hhhhcccCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCC
Q 007860 502 LNNNLLEGRVPE--ELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHA 576 (587)
Q Consensus 502 Ls~N~l~g~ip~--~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l 576 (587)
+++|++. .+|. .+.. +.+|++|+|++|+++ .+|..- ..-+..+++|+.||++.|.+
T Consensus 95 L~~N~i~-~~~~~~~l~~-----------l~~L~~L~l~~N~i~-~~~~~~------~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLV-ELGDLDPLAS-----------LKSLTYLCILRNPVT-NKKHYR------LYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCC-CGGGGGGGGG-----------CTTCCEEECCSSGGG-GSTTHH------HHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCC-cchhhHhhhc-----------CCCCCEEEecCCCCC-CcHhHH------HHHHHHCCccceeCCCcCCH
Confidence 9999996 5775 4443 345788888899987 455320 00134566777777777754
No 123
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.24 E-value=9.9e-12 Score=138.11 Aligned_cols=142 Identities=25% Similarity=0.267 Sum_probs=114.8
Q ss_pred ceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 423 AVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 423 ~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
+..|+.|+|++|.+.. ++ .+..|++|+.|+|++|.|++..| +.. ++|+.|+|++|++++ +| .+..+++|+.|+
T Consensus 42 L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLS 115 (605)
T ss_dssp HTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEE
T ss_pred CCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEE
Confidence 3468889999999985 44 68999999999999999995444 667 999999999999994 55 699999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----ccccccccccccccc------CCCCCCcEEEc
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRY------QRQKSLMLLEM 571 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i------~~l~~L~~L~L 571 (587)
|++|++.+ ++ .+..+ .+|+.|+|++|++++. -.+.|+.|+|++|+| ..+.+|+.|+|
T Consensus 116 Ls~N~l~~-l~-~l~~l-----------~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 116 LEHNGISD-IN-GLVHL-----------PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp CTTSCCCC-CG-GGGGC-----------TTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEEC
T ss_pred ecCCCCCC-Cc-cccCC-----------CccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEEC
Confidence 99999984 43 34443 3466777777777642 125789999999987 56789999999
Q ss_pred cCCCCCCCCCCC
Q 007860 572 ESQHAKGLPTLP 583 (587)
Q Consensus 572 s~N~l~~~P~~~ 583 (587)
++|+|+++|...
T Consensus 183 s~N~i~~l~~l~ 194 (605)
T 1m9s_A 183 SKNHISDLRALA 194 (605)
T ss_dssp CSSCCCBCGGGT
T ss_pred cCCCCCCChHHc
Confidence 999999987643
No 124
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.23 E-value=2.8e-11 Score=109.15 Aligned_cols=113 Identities=16% Similarity=0.120 Sum_probs=94.4
Q ss_pred CCCCCCEEEccCCCCC-CCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCCc
Q 007860 446 LLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG 523 (587)
Q Consensus 446 ~l~~L~~L~Ls~N~l~-g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~ 523 (587)
..++|+.|++++|.++ +.+|..+.. ++|+.|++++|++++. ..++.+++|+.|++++|++++.+|..+..+.
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~---- 88 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP---- 88 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT----
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC----
Confidence 3478999999999998 899998888 9999999999999965 6789999999999999999976777666544
Q ss_pred eeeccccccceEECCCCccccc-cccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860 524 AFDLSVVYICCIRRGRNDYDFG-LPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 524 ~l~Lsl~~L~~L~L~~N~l~~~-~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
+|++|+|++|++++. .|.. +..+++|+.|++++|+++++|.
T Consensus 89 -------~L~~L~ls~N~i~~~~~~~~----------~~~l~~L~~L~l~~N~l~~~~~ 130 (149)
T 2je0_A 89 -------NLTHLNLSGNKIKDLSTIEP----------LKKLENLKSLDLFNCEVTNLND 130 (149)
T ss_dssp -------TCCEEECTTSCCCSHHHHGG----------GGGCTTCCEEECTTCGGGGSTT
T ss_pred -------CCCEEECCCCcCCChHHHHH----------HhhCCCCCEEeCcCCcccchHH
Confidence 477888889998741 1232 4567799999999999999886
No 125
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.23 E-value=3.3e-11 Score=111.61 Aligned_cols=104 Identities=23% Similarity=0.296 Sum_probs=87.0
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
.+.|++++|.++. +|..+ .++|+.|+|++|+|++..|..+.. ++|++|+|++|+|++..|..+..+++|+.|+|++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 4579999999984 77665 389999999999999877888888 9999999999999966666678999999999999
Q ss_pred CcCcccCchh-hhhcccCCceeeccccccceEECCCCcccc
Q 007860 505 NLLEGRVPEE-LYSIGVHGGAFDLSVVYICCIRRGRNDYDF 544 (587)
Q Consensus 505 N~l~g~ip~~-l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~ 544 (587)
|+|++ +|.. +..+ .+|+.|+|++|++..
T Consensus 88 N~l~~-~~~~~~~~l-----------~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKS-IPRGAFDNL-----------KSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCC-CCTTTTTTC-----------TTCCEEECCSSCBCT
T ss_pred CccCE-eCHHHhcCC-----------CCCCEEEeCCCCCCC
Confidence 99995 5554 4443 357788888999874
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.22 E-value=4.5e-11 Score=110.07 Aligned_cols=115 Identities=15% Similarity=0.138 Sum_probs=95.0
Q ss_pred cCCCCCCEEEccCCCCC-CCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcccCC
Q 007860 445 SLLSNLVNLNLSTNSLG-GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHG 522 (587)
Q Consensus 445 ~~l~~L~~L~Ls~N~l~-g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L 522 (587)
...++|+.|++++|.++ +.+|..+.. ++|+.|++++|++++. ..+..+++|+.|+|++|++.+.+|..+..+.
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~--- 95 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLP--- 95 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCT---
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCC---
Confidence 34578999999999998 889988888 9999999999999955 7799999999999999999976776665544
Q ss_pred ceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860 523 GAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 523 ~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
+|+.|+|++|++++ +|. + ..+..+++|+.|+|++|+++++|.
T Consensus 96 --------~L~~L~Ls~N~l~~-~~~-~-------~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 96 --------NLTHLNLSGNKLKD-IST-L-------EPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp --------TCCEEECBSSSCCS-SGG-G-------GGGSSCSCCCEEECCSSGGGTSTT
T ss_pred --------CCCEEeccCCccCc-chh-H-------HHHhcCCCCCEEEeeCCcCcchHH
Confidence 47778888999873 331 0 135667899999999999999886
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=5.2e-11 Score=110.72 Aligned_cols=116 Identities=16% Similarity=0.194 Sum_probs=93.7
Q ss_pred CCCCCCCCcCccceeecCCCCC-----CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCc
Q 007860 400 DPCAPTNWDAWEGITCHPNKDE-----TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSL 473 (587)
Q Consensus 400 ~pc~~~~~~~~~gv~c~~~~~~-----~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L 473 (587)
..|...|.|....+.|...... ....++.|+|++|.|++..|..+..+++|+.|+|++|+|++..+..+.. ++|
T Consensus 4 ~~CP~~C~C~~~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L 83 (174)
T 2r9u_A 4 AGCPSQCSCDQTLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83 (174)
T ss_dssp CSSCTTSEECSSEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCCCCEECCcEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence 4576666687778888765432 2346899999999999998999999999999999999999544444567 999
Q ss_pred cEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhh
Q 007860 474 VRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY 516 (587)
Q Consensus 474 ~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 516 (587)
++|+|++|+|++..+..+..+++|+.|+|++|++.. .+..+.
T Consensus 84 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c-~~~~~~ 125 (174)
T 2r9u_A 84 TQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDC-ECRDIM 125 (174)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCT-TBGGGH
T ss_pred hEEECCCCccceeCHHHhccccCCCEEEeCCCCccc-ccccHH
Confidence 999999999995555559999999999999999984 554443
No 128
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.21 E-value=3.8e-12 Score=130.74 Aligned_cols=150 Identities=16% Similarity=0.109 Sum_probs=116.8
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCC-CCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGT-LPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~-ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
..++.|++++|.+.+.++. +..+++|+.|+|++|.+++. +|..+.. ++|++|+|++|++++..|..++.+++|++|+
T Consensus 70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~ 148 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 148 (336)
T ss_dssp TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence 4577888999988876665 66789999999999998865 7777777 8999999999999888888888899999999
Q ss_pred ccCC-cCccc-CchhhhhcccCCceeecc----------------cc-ccceEECCCCc--cc-cccc------cccccc
Q 007860 502 LNNN-LLEGR-VPEELYSIGVHGGAFDLS----------------VV-YICCIRRGRND--YD-FGLP------QDLMSL 553 (587)
Q Consensus 502 Ls~N-~l~g~-ip~~l~~~~~~L~~l~Ls----------------l~-~L~~L~L~~N~--l~-~~~p------~~L~~L 553 (587)
|++| .+++. ++..+..+. +|+.|+++ +. +|++|+|++|. ++ +.+| ++|+.|
T Consensus 149 L~~~~~l~~~~l~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L 227 (336)
T 2ast_B 149 LSGCSGFSEFALQTLLSSCS-RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 227 (336)
T ss_dssp CTTCBSCCHHHHHHHHHHCT-TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred CCCCCCCCHHHHHHHHhcCC-CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence 9999 67752 555566655 58888886 34 88888888884 43 2222 468888
Q ss_pred cccccc-c--------CCCCCCcEEEccCCC
Q 007860 554 SAKRNR-Y--------QRQKSLMLLEMESQH 575 (587)
Q Consensus 554 ~l~~N~-i--------~~l~~L~~L~Ls~N~ 575 (587)
++++|. + ..+++|+.|+|++|.
T Consensus 228 ~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 228 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY 258 (336)
T ss_dssp ECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred eCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence 888887 4 467888889988885
No 129
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.18 E-value=6.6e-11 Score=117.66 Aligned_cols=121 Identities=17% Similarity=0.184 Sum_probs=93.0
Q ss_pred CceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCccccCCCCCCEEE
Q 007860 422 TAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLTSSSKLQLVL 501 (587)
Q Consensus 422 ~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~ 501 (587)
.+..|+.|+|++|.+++..+ +..+++|+.|+|++|++++ +|.... ++|+.|+|++|++++ +| .++.+++|+.|+
T Consensus 61 ~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~~~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~ 134 (263)
T 1xeu_A 61 FFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNGIPS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILS 134 (263)
T ss_dssp GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTTCCC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEE
T ss_pred hCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCcccc-CcccEEEccCCccCC-Ch-hhcCcccccEEE
Confidence 34579999999999997554 9999999999999999994 555333 899999999999995 54 599999999999
Q ss_pred ccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----cccccccccccccccC
Q 007860 502 LNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LPQDLMSLSAKRNRYQ 561 (587)
Q Consensus 502 Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p~~L~~L~l~~N~i~ 561 (587)
+++|++++ ++ .+..+. +|+.|+|++|++++. -.+.|+.|++++|++.
T Consensus 135 Ls~N~i~~-~~-~l~~l~-----------~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 135 IRNNKLKS-IV-MLGFLS-----------KLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp CTTSCCCB-CG-GGGGCT-----------TCCEEECTTSCCCBCTTSTTCCCCCEEEEEEEEEE
T ss_pred CCCCcCCC-Ch-HHccCC-----------CCCEEECCCCcCcchHHhccCCCCCEEeCCCCccc
Confidence 99999985 54 454433 455666666666532 1145777778888773
No 130
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.16 E-value=6.6e-11 Score=122.23 Aligned_cols=97 Identities=19% Similarity=0.237 Sum_probs=56.4
Q ss_pred CCCCC-CcCccceeecCCCCCCceeEEEEEcCCCCCcccCchhhcCCCCCCEEEccC-CCCCCCCCCCCCC-CCccEEec
Q 007860 402 CAPTN-WDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLNLST-NSLGGTLPSGLGQ-QSLVRLDL 478 (587)
Q Consensus 402 c~~~~-~~~~~gv~c~~~~~~~~~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~-N~l~g~ip~~~~~-~~L~~L~L 478 (587)
|...| .|.|..+.|... |+|+ .+|. +..+++|+.|+|++ |.|++..|..+.. ++|+.|+|
T Consensus 1 cp~~c~~C~~~~v~~~~~---------------n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l 63 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRD---------------GALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63 (347)
T ss_dssp CCSSSCCSSSSCEECCSS---------------CCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC
T ss_pred CCCcCccccCCEEEcCCC---------------CCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC
Confidence 44444 577776666533 1344 2455 66666666666664 6666444455555 66666666
Q ss_pred cCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhh
Q 007860 479 SDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY 516 (587)
Q Consensus 479 s~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 516 (587)
++|+|++..|..|+.|++|+.|+|++|+|+ .+|..++
T Consensus 64 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~ 100 (347)
T 2ifg_A 64 VKSGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTV 100 (347)
T ss_dssp CSSCCCEECTTGGGSCSCCCEEECCSSCCS-CCCSTTT
T ss_pred CCCccceeCHHHhcCCcCCCEEeCCCCccc-eeCHHHc
Confidence 666666655556666666666666666666 3444433
No 131
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.13 E-value=9.2e-12 Score=133.53 Aligned_cols=154 Identities=18% Similarity=0.141 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCccc----CchhhcCCCCCCEEEccCCCCCCCC----CCCCC-C-CCccEEeccCCcCCcc----CCcc
Q 007860 425 VISQIDLGSQGLKGY----ISDKISLLSNLVNLNLSTNSLGGTL----PSGLG-Q-QSLVRLDLSDNQFTGS----IPDS 490 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~----~p~~l~~l~~L~~L~Ls~N~l~g~i----p~~~~-~-~~L~~L~Ls~N~l~g~----iP~~ 490 (587)
.|+.|+|++|.+++. ++..+..+++|+.|+|++|.+++.. .+.+. . ++|++|++++|+++.. ++..
T Consensus 200 ~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 279 (461)
T 1z7x_W 200 QLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRV 279 (461)
T ss_dssp CCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred CceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHH
Confidence 477788888888763 5677778888888888888876431 12222 3 7788888888888753 6666
Q ss_pred ccCCCCCCEEEccCCcCcccCchhhhhc----ccCCceeecc------------------ccccceEECCCCcccccc--
Q 007860 491 LTSSSKLQLVLLNNNLLEGRVPEELYSI----GVHGGAFDLS------------------VVYICCIRRGRNDYDFGL-- 546 (587)
Q Consensus 491 l~~l~~L~~L~Ls~N~l~g~ip~~l~~~----~~~L~~l~Ls------------------l~~L~~L~L~~N~l~~~~-- 546 (587)
+..+++|++|++++|.+....+..+... ..+|+.|+++ +.+|+.|+|++|++....
T Consensus 280 l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~ 359 (461)
T 1z7x_W 280 LRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVR 359 (461)
T ss_dssp HHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHH
T ss_pred HhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHH
Confidence 7778888888888888865444444433 1357777776 367888899888876421
Q ss_pred ---------ccccccccccccccC------------CCCCCcEEEccCCCCCC
Q 007860 547 ---------PQDLMSLSAKRNRYQ------------RQKSLMLLEMESQHAKG 578 (587)
Q Consensus 547 ---------p~~L~~L~l~~N~i~------------~l~~L~~L~Ls~N~l~~ 578 (587)
.+.|+.|++++|+|+ .+++|++|+|++|+++.
T Consensus 360 ~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 360 ELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCH
Confidence 237888888888874 47889999999998864
No 132
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.12 E-value=8.2e-13 Score=125.51 Aligned_cols=63 Identities=24% Similarity=0.303 Sum_probs=36.7
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 508 (587)
.+..+++|+.|+|++|.+++ +| .+.. ++|+.|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~ 106 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA 106 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECC
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCC
Confidence 55666666666666666653 44 4444 56666666666665 45555555556666666666665
No 133
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.10 E-value=1.2e-11 Score=132.54 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=35.7
Q ss_pred eEEEEEcCCCCCcccCchhhc-----CCCCCCEEEccCCCCCCCC----CCCCCC-CCccEEeccCCcCCccCCcccc--
Q 007860 425 VISQIDLGSQGLKGYISDKIS-----LLSNLVNLNLSTNSLGGTL----PSGLGQ-QSLVRLDLSDNQFTGSIPDSLT-- 492 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~-----~l~~L~~L~Ls~N~l~g~i----p~~~~~-~~L~~L~Ls~N~l~g~iP~~l~-- 492 (587)
.|+.|+|++|.+++..+..+. .+++|+.|+|++|.+++.. +..+.. ++|++|++++|+++...+..+.
T Consensus 114 ~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~ 193 (461)
T 1z7x_W 114 TLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQG 193 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHH
T ss_pred ceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHH
Confidence 344455555554433222222 1334555555555544321 222222 4555555555554432222222
Q ss_pred ---CCCCCCEEEccCCcCc
Q 007860 493 ---SSSKLQLVLLNNNLLE 508 (587)
Q Consensus 493 ---~l~~L~~L~Ls~N~l~ 508 (587)
.+++|+.|++++|.++
T Consensus 194 l~~~~~~L~~L~L~~n~l~ 212 (461)
T 1z7x_W 194 LKDSPCQLEALKLESCGVT 212 (461)
T ss_dssp HHHSCCCCCEEECTTSCCB
T ss_pred HhcCCCCceEEEccCCCCc
Confidence 1335555555555554
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.09 E-value=2.3e-10 Score=126.21 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=101.2
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
+..+.+++|.+....+ ..|+.|+|++|.|++ +|. ++. ++|+.|+|++|+|+ .+|..++.+++|+.|+|++
T Consensus 425 L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~ 495 (567)
T 1dce_A 425 LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASD 495 (567)
T ss_dssp HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCS
T ss_pred hhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCC
Confidence 3344555565553222 258999999999995 786 888 99999999999999 9999999999999999999
Q ss_pred CcCcccCchhhhhcccCCceeeccccccceEECCCCcccccc-ccccccccccccccCCCCCCcEEEccCCCCCCCCCCC
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGL-PQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLP 583 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~-p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~~~ 583 (587)
|+|++ +| .++.+ .+|+.|+|++|++++.. |..+ ..+++|+.|+|++|+|+++|...
T Consensus 496 N~l~~-lp-~l~~l-----------~~L~~L~Ls~N~l~~~~~p~~l----------~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 496 NALEN-VD-GVANL-----------PRLQELLLCNNRLQQSAAIQPL----------VSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp SCCCC-CG-GGTTC-----------SSCCEEECCSSCCCSSSTTGGG----------GGCTTCCEEECTTSGGGGSSSCT
T ss_pred CCCCC-Cc-ccCCC-----------CCCcEEECCCCCCCCCCCcHHH----------hcCCCCCEEEecCCcCCCCccHH
Confidence 99995 77 55553 35788899999998654 6654 45679999999999999998743
No 135
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.06 E-value=5.1e-10 Score=115.94 Aligned_cols=143 Identities=20% Similarity=0.161 Sum_probs=75.3
Q ss_pred EEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccC-CcCCccCCccccCCC-CCCEEEccC
Q 007860 428 QIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSD-NQFTGSIPDSLTSSS-KLQLVLLNN 504 (587)
Q Consensus 428 ~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~-N~l~g~iP~~l~~l~-~L~~L~Ls~ 504 (587)
.+.+..|++....|..+..+++|+.|++++|.+.+..+..+.. .++..|++++ |++...-+..+..+. .++.|+|++
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~ 163 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK 163 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence 3455556666555555666666666666666665333333333 5555555544 344422222344433 456666666
Q ss_pred CcCcccCchhhhhcccCCceeeccccccceEECCC-Cccccccc-------ccccccccccccc-----CCCCCCcEEEc
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGR-NDYDFGLP-------QDLMSLSAKRNRY-----QRQKSLMLLEM 571 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~-N~l~~~~p-------~~L~~L~l~~N~i-----~~l~~L~~L~L 571 (587)
|+|+ .+|..++... +|+.|++++ |.++ .+| ++|+.|++++|+| ..+..|+.|.+
T Consensus 164 N~i~-~i~~~~f~~~-----------~L~~l~l~~~n~l~-~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 164 NGIQ-EIHNSAFNGT-----------QLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp SCCC-EECTTSSTTE-----------EEEEEECTTCTTCC-CCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEEC
T ss_pred cccc-CCChhhcccc-----------chhHHhhccCCccc-CCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhh
Confidence 6665 4555444332 344555553 3443 444 3466667777776 23456666665
Q ss_pred c-CCCCCCCCCCC
Q 007860 572 E-SQHAKGLPTLP 583 (587)
Q Consensus 572 s-~N~l~~~P~~~ 583 (587)
. .++++.+|...
T Consensus 231 l~~~~l~~lP~l~ 243 (350)
T 4ay9_X 231 RSTYNLKKLPTLE 243 (350)
T ss_dssp TTCTTCCCCCCTT
T ss_pred ccCCCcCcCCCch
Confidence 3 34667777543
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.05 E-value=4.6e-10 Score=104.23 Aligned_cols=114 Identities=20% Similarity=0.222 Sum_probs=91.0
Q ss_pred hhcCCCCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhh-hhcc
Q 007860 443 KISLLSNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEEL-YSIG 519 (587)
Q Consensus 443 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l-~~~~ 519 (587)
.+.++.+|+.|++++|.++ .+|. +.. ++|++|++++|++++. ..++.+++|+.|+|++|++++ +|..+ ..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~~~l- 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLDQAL- 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHHHHC-
T ss_pred hcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchhhcC-
Confidence 4567889999999999999 5654 555 5999999999999964 579999999999999999994 66554 443
Q ss_pred cCCceeeccccccceEECCCCccccccccccccccccccccCCCCCCcEEEccCCCCCCCCC
Q 007860 520 VHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPT 581 (587)
Q Consensus 520 ~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~~~P~ 581 (587)
.+|+.|+|++|++. .+|. + ..+..+++|+.|+|++|+++.+|.
T Consensus 88 ----------~~L~~L~L~~N~i~-~~~~-~-------~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 88 ----------PDLTELILTNNSLV-ELGD-L-------DPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp ----------TTCCEEECCSCCCC-CGGG-G-------GGGGGCTTCCEEECCSSGGGGSTT
T ss_pred ----------CCCCEEECCCCcCC-cchh-h-------HhhhcCCCCCEEEecCCCCCCcHh
Confidence 35778888899986 5554 1 124567899999999999988875
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.95 E-value=3.8e-11 Score=113.86 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=90.9
Q ss_pred hcCCCCCCEEEccCCCCCCCCCC------CCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhh
Q 007860 444 ISLLSNLVNLNLSTNSLGGTLPS------GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELY 516 (587)
Q Consensus 444 l~~l~~L~~L~Ls~N~l~g~ip~------~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~ 516 (587)
+.....++.++++.+.++|.+|. .+.. ++|++|+|++|++++ +| .+..+++|+.|++++|++. .+|..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 66778888899999999988887 7777 999999999999995 88 8899999999999999998 6887666
Q ss_pred hcccCCceeeccccccceEECCCCccccccc-----ccccccccccccc---------CCCCCCcEEEccCCCCCCC
Q 007860 517 SIGVHGGAFDLSVVYICCIRRGRNDYDFGLP-----QDLMSLSAKRNRY---------QRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 517 ~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p-----~~L~~L~l~~N~i---------~~l~~L~~L~Ls~N~l~~~ 579 (587)
.+. +|+.|++ ++|++++ +| +.|+.|++++|+| ..+++|+.|++++|++++.
T Consensus 91 ~~~-~L~~L~L----------~~N~l~~-l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 91 VAD-TLEELWI----------SYNQIAS-LSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHH-HCSEEEE----------EEEECCC-HHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred cCC-cCCEEEC----------cCCcCCc-CCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 544 3555544 4555542 22 3456666666655 4566777788877776443
No 138
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.85 E-value=1.8e-10 Score=120.51 Aligned_cols=84 Identities=21% Similarity=0.256 Sum_probs=45.6
Q ss_pred eEEEEEcCCCCCcccCchhh-cCCCCCCEEEccCCCCCCCCCCCC-----CC-CCccEEeccCCcCCc----cCCccccC
Q 007860 425 VISQIDLGSQGLKGYISDKI-SLLSNLVNLNLSTNSLGGTLPSGL-----GQ-QSLVRLDLSDNQFTG----SIPDSLTS 493 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l-~~l~~L~~L~Ls~N~l~g~ip~~~-----~~-~~L~~L~Ls~N~l~g----~iP~~l~~ 493 (587)
.|+.|+|++|.++..-...+ ..+++|+.|+|++|.++..-...+ .. ++|++|+|++|+++. .++..+..
T Consensus 102 ~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~ 181 (372)
T 3un9_A 102 ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAG 181 (372)
T ss_dssp CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHT
T ss_pred CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhc
Confidence 46666666666653322222 234566666666666653222222 12 556666666666652 23334455
Q ss_pred CCCCCEEEccCCcCc
Q 007860 494 SSKLQLVLLNNNLLE 508 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~ 508 (587)
+++|++|+|++|.+.
T Consensus 182 ~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 182 NTSVTHLSLLHTGLG 196 (372)
T ss_dssp CSSCCEEECTTSSCH
T ss_pred CCCcCEEeCCCCCCC
Confidence 666666666666665
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=3.9e-09 Score=108.84 Aligned_cols=96 Identities=22% Similarity=0.201 Sum_probs=79.7
Q ss_pred ceeecCCCCCCceeEEEEEcCC-CCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCc
Q 007860 412 GITCHPNKDETAVVISQIDLGS-QGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPD 489 (587)
Q Consensus 412 gv~c~~~~~~~~~~l~~L~L~~-n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~ 489 (587)
+++-.+. ...+.+|+.|+|++ |.|++..+..|..|++|+.|+|++|+|++..|..+.. ++|+.|+|++|+|++..|.
T Consensus 20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 3443344 44456799999996 9999988899999999999999999999888888888 9999999999999954444
Q ss_pred cccCCCCCCEEEccCCcCcc
Q 007860 490 SLTSSSKLQLVLLNNNLLEG 509 (587)
Q Consensus 490 ~l~~l~~L~~L~Ls~N~l~g 509 (587)
.+..++ |+.|+|.+|+|..
T Consensus 99 ~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 99 TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp TTCSCC-CCEEECCSSCCCC
T ss_pred HcccCC-ceEEEeeCCCccC
Confidence 455555 9999999999974
No 140
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=1.1e-07 Score=105.12 Aligned_cols=155 Identities=15% Similarity=0.057 Sum_probs=109.8
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCC---CCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEE
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLG---GTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLV 500 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~---g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L 500 (587)
.|+.|+|++|.+.+ ++..+..+++|+.|++++.... +..+..+.. ++|+.|+++++.. +.+|..+..+++|++|
T Consensus 221 ~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L 298 (592)
T 3ogk_B 221 SLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKL 298 (592)
T ss_dssp TCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEE
T ss_pred CCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEE
Confidence 46777777777765 6677777777887777753332 233445555 7888888888644 4778888889999999
Q ss_pred EccCCcCcccCchhhhhcccCCceeecc--------------ccccceEECCC-----------Cccccc-------ccc
Q 007860 501 LLNNNLLEGRVPEELYSIGVHGGAFDLS--------------VVYICCIRRGR-----------NDYDFG-------LPQ 548 (587)
Q Consensus 501 ~Ls~N~l~g~ip~~l~~~~~~L~~l~Ls--------------l~~L~~L~L~~-----------N~l~~~-------~p~ 548 (587)
+|++|.+.+.....+.....+|+.|+++ +.+|++|+|++ |.++.. -.+
T Consensus 299 ~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~ 378 (592)
T 3ogk_B 299 DLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQ 378 (592)
T ss_dssp EETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCT
T ss_pred ecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCc
Confidence 9999998754443433334468988885 57899999993 566532 125
Q ss_pred ccccccccccccC---------CCCCCcEEEcc----CCCCCCCCC
Q 007860 549 DLMSLSAKRNRYQ---------RQKSLMLLEME----SQHAKGLPT 581 (587)
Q Consensus 549 ~L~~L~l~~N~i~---------~l~~L~~L~Ls----~N~l~~~P~ 581 (587)
+|+.|++..|+++ .+++|+.|+|+ .|++++.|.
T Consensus 379 ~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~ 424 (592)
T 3ogk_B 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPL 424 (592)
T ss_dssp TCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCC
T ss_pred cCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchH
Confidence 6888888888772 38889999996 788887653
No 141
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.51 E-value=8.3e-09 Score=114.11 Aligned_cols=108 Identities=16% Similarity=0.060 Sum_probs=74.8
Q ss_pred CCccEEeccCCcCCccCCccccC-CCCCCEEEcc----CCcCccc-----CchhhhhcccCCceeecc------------
Q 007860 471 QSLVRLDLSDNQFTGSIPDSLTS-SSKLQLVLLN----NNLLEGR-----VPEELYSIGVHGGAFDLS------------ 528 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~-l~~L~~L~Ls----~N~l~g~-----ip~~l~~~~~~L~~l~Ls------------ 528 (587)
++|++|+++.|++++..+..++. +++|+.|+++ .|.+++. ++..+..+. +|+.|+++
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~-~L~~L~L~~~~~~l~~~~~~ 456 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCK-KLRRFAFYLRQGGLTDLGLS 456 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT-TCCEEEEECCGGGCCHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCC-CCCEEEEecCCCCccHHHHH
Confidence 56777777666776655555554 6777777775 5666642 222233443 57777772
Q ss_pred -----ccccceEECCCCccccc-cc------ccccccccccccc---------CCCCCCcEEEccCCCCCCC
Q 007860 529 -----VVYICCIRRGRNDYDFG-LP------QDLMSLSAKRNRY---------QRQKSLMLLEMESQHAKGL 579 (587)
Q Consensus 529 -----l~~L~~L~L~~N~l~~~-~p------~~L~~L~l~~N~i---------~~l~~L~~L~Ls~N~l~~~ 579 (587)
+.+|+.|+|++|++++. ++ ++|+.|++++|.| ..+++|+.|+|++|+++..
T Consensus 457 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 457 YIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 45688999999988651 12 5688999999986 3578999999999998764
No 142
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.45 E-value=2.1e-08 Score=104.67 Aligned_cols=145 Identities=16% Similarity=0.087 Sum_probs=77.1
Q ss_pred EEEEEcCCCCCcccCchhhcCC-----CCCCEEEccCCCCCCCCCCCCCC--CCccEEeccCCcCCccCCccc-----cC
Q 007860 426 ISQIDLGSQGLKGYISDKISLL-----SNLVNLNLSTNSLGGTLPSGLGQ--QSLVRLDLSDNQFTGSIPDSL-----TS 493 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l-----~~L~~L~Ls~N~l~g~ip~~~~~--~~L~~L~Ls~N~l~g~iP~~l-----~~ 493 (587)
++.|+|++|.++......+..+ ++|+.|+|++|.++......+.. .+|+.|+|++|+++..-...+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 5567777777764433333322 56777777777765433333333 567777777777753322222 23
Q ss_pred CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCcccc----------ccccccccccccccccC--
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDF----------GLPQDLMSLSAKRNRYQ-- 561 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~----------~~p~~L~~L~l~~N~i~-- 561 (587)
.++|+.|+|++|.|+..-...+...... ..+|++|+|++|.+.. .-+..|+.|+|++|.|+
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~-------~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAG-------NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHT-------CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhc-------CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 4567777777777652111122211100 2345556666666542 11235666666666652
Q ss_pred ----------CCCCCcEEEccCCCCC
Q 007860 562 ----------RQKSLMLLEMESQHAK 577 (587)
Q Consensus 562 ----------~l~~L~~L~Ls~N~l~ 577 (587)
..+.|+.|+|++|.|+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 2456666777666664
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=2.8e-07 Score=94.20 Aligned_cols=85 Identities=9% Similarity=0.032 Sum_probs=51.6
Q ss_pred CCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccccccccc-cccccc-------cccCCCCC
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLM-SLSAKR-------NRYQRQKS 565 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~-~L~l~~-------N~i~~l~~ 565 (587)
+++|+.|+|++|++. .+|...+....+|+.++|..+ ++. +....|.+ -.+|+ .+.+.+ ..|.++.+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~--I~~~aF~~--~~~L~~~l~l~~~l~~I~~~aF~~c~~ 298 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKT--IGQRVFSN--CGRLAGTLELPASVTAIEFGAFMGCDN 298 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCE--ECTTTTTT--CTTCCEEEEECTTCCEECTTTTTTCTT
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cce--ehHHHhhC--ChhccEEEEEcccceEEchhhhhCCcc
Confidence 567888888888877 577665554434555555421 221 11222221 12344 444433 35688999
Q ss_pred CcEEEccCCCCCCCCCCCC
Q 007860 566 LMLLEMESQHAKGLPTLPL 584 (587)
Q Consensus 566 L~~L~Ls~N~l~~~P~~~~ 584 (587)
|+.|++++|+++.++...+
T Consensus 299 L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 299 LRYVLATGDKITTLGDELF 317 (329)
T ss_dssp EEEEEECSSCCCEECTTTT
T ss_pred CCEEEeCCCccCccchhhh
Confidence 9999999999998887654
No 144
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.25 E-value=2.2e-07 Score=102.50 Aligned_cols=147 Identities=16% Similarity=0.071 Sum_probs=92.2
Q ss_pred eeEEEEEcCCC-CCccc-CchhhcCCCCCCEEEccCCCCCCCCCCCCC----C-CCccEEeccCCc--CCc-cCCccccC
Q 007860 424 VVISQIDLGSQ-GLKGY-ISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQ--FTG-SIPDSLTS 493 (587)
Q Consensus 424 ~~l~~L~L~~n-~l~g~-~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~----~-~~L~~L~Ls~N~--l~g-~iP~~l~~ 493 (587)
++|+.|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+. . ++|+.|++++|. +.. .++..+..
T Consensus 130 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~ 209 (594)
T 2p1m_B 130 KNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTR 209 (594)
T ss_dssp TTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHH
T ss_pred CCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHh
Confidence 45788888888 45432 445556888999999999887765444333 3 689999999886 221 11222345
Q ss_pred CCCCCEEEccCCcCcccCchhhhhcccCCceeec--------------------------------------------cc
Q 007860 494 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDL--------------------------------------------SV 529 (587)
Q Consensus 494 l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~L--------------------------------------------sl 529 (587)
+++|+.|++++|...+.+|..+..+. +|+.|++ .+
T Consensus 210 ~~~L~~L~L~~~~~~~~l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~ 288 (594)
T 2p1m_B 210 CPNLKSLKLNRAVPLEKLATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVC 288 (594)
T ss_dssp CTTCCEEECCTTSCHHHHHHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHH
T ss_pred CCCCcEEecCCCCcHHHHHHHHhcCC-cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhh
Confidence 68899999988833223555444443 3555542 13
Q ss_pred cccceEECCCCccccc-------ccccccccccccccc---------CCCCCCcEEEcc
Q 007860 530 VYICCIRRGRNDYDFG-------LPQDLMSLSAKRNRY---------QRQKSLMLLEME 572 (587)
Q Consensus 530 ~~L~~L~L~~N~l~~~-------~p~~L~~L~l~~N~i---------~~l~~L~~L~Ls 572 (587)
.+|++|+|++|.+... -.++|+.|++++| + ..+++|++|+|+
T Consensus 289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 5677788877775531 1245777777766 3 246778888773
No 145
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.19 E-value=4.9e-07 Score=89.40 Aligned_cols=82 Identities=26% Similarity=0.255 Sum_probs=59.8
Q ss_pred EEcCCCCC---cccCchhhcCCCCCCEEEccCCCCCC--CCCCCCCC-CCccEEeccCCcCCccCCccccCCC--CCCEE
Q 007860 429 IDLGSQGL---KGYISDKISLLSNLVNLNLSTNSLGG--TLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSS--KLQLV 500 (587)
Q Consensus 429 L~L~~n~l---~g~~p~~l~~l~~L~~L~Ls~N~l~g--~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~--~L~~L 500 (587)
++++.|.. .+.++....++++|+.|+|++|+|++ .+|..+.. ++|+.|+|++|+|++. ..+..+. +|+.|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 45556632 22233333578899999999999996 45555556 8999999999999854 3355554 89999
Q ss_pred EccCCcCcccCc
Q 007860 501 LLNNNLLEGRVP 512 (587)
Q Consensus 501 ~Ls~N~l~g~ip 512 (587)
+|++|++++.+|
T Consensus 226 ~L~~Npl~~~~~ 237 (267)
T 3rw6_A 226 WLDGNSLCDTFR 237 (267)
T ss_dssp ECTTSTTGGGCS
T ss_pred EccCCcCccccC
Confidence 999999998776
No 146
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.16 E-value=1.3e-07 Score=104.29 Aligned_cols=104 Identities=13% Similarity=0.013 Sum_probs=62.4
Q ss_pred CCccEEeccCCcCCccCCcccc-CCCCCCEEEcc--C----CcCcccCc------hhhhhcccCCceeecc---------
Q 007860 471 QSLVRLDLSDNQFTGSIPDSLT-SSSKLQLVLLN--N----NLLEGRVP------EELYSIGVHGGAFDLS--------- 528 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~-~l~~L~~L~Ls--~----N~l~g~ip------~~l~~~~~~L~~l~Ls--------- 528 (587)
++|+.|.++.|++++..+..+. .+++|+.|+++ + |.++ ..| .-+..+. +|+.|+|+
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~-~L~~L~L~~~l~~~~~~ 449 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCK-DLRRLSLSGLLTDKVFE 449 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCT-TCCEEECCSSCCHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCC-CccEEeecCcccHHHHH
Confidence 4566666655666544444443 46777777777 3 4454 222 1123333 57777775
Q ss_pred -----ccccceEECCCCcccccc-------cccccccccccccc---------CCCCCCcEEEccCCCC
Q 007860 529 -----VVYICCIRRGRNDYDFGL-------PQDLMSLSAKRNRY---------QRQKSLMLLEMESQHA 576 (587)
Q Consensus 529 -----l~~L~~L~L~~N~l~~~~-------p~~L~~L~l~~N~i---------~~l~~L~~L~Ls~N~l 576 (587)
..+|+.|+|++|.+++.. .++|+.|++++|.+ ..+++|+.|+|++|++
T Consensus 450 ~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 450 YIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred HHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 456777888777775421 24577777777766 2466788888887766
No 147
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.10 E-value=7.2e-06 Score=83.66 Aligned_cols=93 Identities=18% Similarity=0.211 Sum_probs=58.4
Q ss_pred CCccEEeccCCcCCccCC-ccccCCCCCCEEEccCCcCcccCchhhhhcccCCc-eeeccccccceEECCCCcccccccc
Q 007860 471 QSLVRLDLSDNQFTGSIP-DSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGG-AFDLSVVYICCIRRGRNDYDFGLPQ 548 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP-~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~-~l~Lsl~~L~~L~L~~N~l~~~~p~ 548 (587)
++|+.|+|++|+++ .+| ..|..+++|+.|+|.+| +. .|+...+....+|+ .+++.. +++ .+....|.+ ..
T Consensus 226 ~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~-~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~--c~ 297 (329)
T 3sb4_A 226 PNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LK-TIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMG--CD 297 (329)
T ss_dssp TTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTT--CT
T ss_pred CCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cc-eehHHHhhCChhccEEEEEcc-cce--EEchhhhhC--Cc
Confidence 47889999998888 455 46888999999999988 66 57766555444577 776652 222 112222221 23
Q ss_pred ccccccccccc--------cCCCCCCcEEEc
Q 007860 549 DLMSLSAKRNR--------YQRQKSLMLLEM 571 (587)
Q Consensus 549 ~L~~L~l~~N~--------i~~l~~L~~L~L 571 (587)
+|+.|++..|+ |.++.+|+.+..
T Consensus 298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 298 NLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred cCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 34555554443 467778887753
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=2.1e-06 Score=89.06 Aligned_cols=147 Identities=10% Similarity=0.045 Sum_probs=84.9
Q ss_pred eeEEEEEcCCCCC---------cccCchhhcCCCCCCEEEccCCCCCCCCCCCCCCCCccEEeccCCcCCccCCcccc--
Q 007860 424 VVISQIDLGSQGL---------KGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQQSLVRLDLSDNQFTGSIPDSLT-- 492 (587)
Q Consensus 424 ~~l~~L~L~~n~l---------~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~L~~L~Ls~N~l~g~iP~~l~-- 492 (587)
++|+.|.+..+.. .+.+...+..+++|+.|.|++|.-. .++. +..++|+.|+|..+.+....-..++
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEEecCCCChHHHHHHHHc
Confidence 4577787765533 1235566788899999999887311 3443 3238999999998887644333343
Q ss_pred CCCCCCEEEccC--CcCcccC-chhhhhcccCCceeeccccccceEECCCCccccc---------ccccccccccccccc
Q 007860 493 SSSKLQLVLLNN--NLLEGRV-PEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG---------LPQDLMSLSAKRNRY 560 (587)
Q Consensus 493 ~l~~L~~L~Ls~--N~l~g~i-p~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~---------~p~~L~~L~l~~N~i 560 (587)
.+++|+.|+|+. |...|.. ...+..... . -..++|++|+|.+|.+... ..+.|+.|+|+.|.|
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~---~--~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L 291 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS---K--DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSC---T--TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCC
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHh---c--CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCC
Confidence 688999999863 3322211 111111100 0 0134556666666655421 123566666666665
Q ss_pred C------------CCCCCcEEEccCCCCC
Q 007860 561 Q------------RQKSLMLLEMESQHAK 577 (587)
Q Consensus 561 ~------------~l~~L~~L~Ls~N~l~ 577 (587)
. .+++|+.|+|++|.|+
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2 2466777777777654
No 149
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.98 E-value=7.5e-07 Score=83.25 Aligned_cols=112 Identities=13% Similarity=0.149 Sum_probs=77.0
Q ss_pred eEEEEEcCCC-CCcc----cCchhhcCCCCCCEEEccCCCCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCcc
Q 007860 425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDS 490 (587)
Q Consensus 425 ~l~~L~L~~n-~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~ 490 (587)
.|+.|+|++| .+.. .+...+...++|++|+|++|.+... +...+.. +.|++|+|++|++... +.+.
T Consensus 37 ~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~ 116 (185)
T 1io0_A 37 DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEA 116 (185)
T ss_dssp TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHG
T ss_pred CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHH
Confidence 4778999998 8863 2455667778899999999998742 2233334 7899999999998743 4556
Q ss_pred ccCCCCCCEEEc--cCCcCcccCchhhhhcccCCceeeccccccceEECCCCccc
Q 007860 491 LTSSSKLQLVLL--NNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYD 543 (587)
Q Consensus 491 l~~l~~L~~L~L--s~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~ 543 (587)
+...++|++|+| ++|.+...-...+.+.... ...|++|+|+.|.+.
T Consensus 117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~-------n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEK-------NTTLLKFGYHFTQQG 164 (185)
T ss_dssp GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHH-------CSSCCEEECCCSSHH
T ss_pred HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHh-------CCCcCEEeccCCCCC
Confidence 777788999999 7888874322333332211 345778888888774
No 150
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.95 E-value=3.1e-06 Score=83.63 Aligned_cols=76 Identities=25% Similarity=0.224 Sum_probs=63.6
Q ss_pred eeEEEEEcCCCCCcc--cCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-C--CccEEeccCCcCCccCCc-------cc
Q 007860 424 VVISQIDLGSQGLKG--YISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-Q--SLVRLDLSDNQFTGSIPD-------SL 491 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g--~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~--~L~~L~Ls~N~l~g~iP~-------~l 491 (587)
+.|+.|+|++|.|++ .+|..+..+++|+.|+|++|+|++. ..+.. . +|++|+|++|.+.+.+|. .+
T Consensus 170 ~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il 247 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIR 247 (267)
T ss_dssp TTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHH
T ss_pred CCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHHH
Confidence 468999999999998 5678888999999999999999954 34554 4 899999999999988873 35
Q ss_pred cCCCCCCEEE
Q 007860 492 TSSSKLQLVL 501 (587)
Q Consensus 492 ~~l~~L~~L~ 501 (587)
..+++|+.||
T Consensus 248 ~~~P~L~~LD 257 (267)
T 3rw6_A 248 ERFPKLLRLD 257 (267)
T ss_dssp HHCTTCCEES
T ss_pred HHCcccCeEC
Confidence 6788888776
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.90 E-value=1.2e-06 Score=81.81 Aligned_cols=126 Identities=10% Similarity=0.114 Sum_probs=83.6
Q ss_pred cCchhhcCCCCCCEEEccCC-CCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCccccCCCCCCEEEccCCcCc
Q 007860 439 YISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 439 ~~p~~l~~l~~L~~L~Ls~N-~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~ 508 (587)
.+...+...+.|+.|+|++| .+... +...+.. ++|++|+|++|++... +.+.+...++|++|+|++|.|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45566788899999999999 88732 3344555 8899999999999742 3445566688999999999997
Q ss_pred ccCchhhhhcccCCceeeccccccceEEC--CCCccccccccccccccccccccCCCCCCcEEEccCCCCC
Q 007860 509 GRVPEELYSIGVHGGAFDLSVVYICCIRR--GRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAK 577 (587)
Q Consensus 509 g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L--~~N~l~~~~p~~L~~L~l~~N~i~~l~~L~~L~Ls~N~l~ 577 (587)
..--..+...... ...|++|+| +.|.+...-...|. ..+...+.|++|+|++|.+.
T Consensus 107 ~~g~~~l~~~L~~-------n~~L~~L~L~~~~N~i~~~g~~~l~------~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGILALVEALQS-------NTSLIELRIDNQSQPLGNNVEMEIA------NMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHGGGG-------CSSCCEEECCCCSSCCCHHHHHHHH------HHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHHh-------CCCceEEEecCCCCCCCHHHHHHHH------HHHHhCCCcCEEeccCCCCC
Confidence 4322233332211 346888888 77887632111111 11233457888888888753
No 152
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.60 E-value=0.00023 Score=74.70 Aligned_cols=150 Identities=12% Similarity=0.129 Sum_probs=94.1
Q ss_pred EEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccC
Q 007860 426 ISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNN 504 (587)
Q Consensus 426 l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~ 504 (587)
|+.+.|.. .+...-+..|.++++|+.++|++|+++ .+|..... .+|+.+.|..+ ++..-...|..+++|+.+++..
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 55677764 555555567888888888888888887 66665555 78888888744 5533345677778888888876
Q ss_pred CcCcccCchhhhhcccCCceeecc-------------ccccceEECCCCcccc----ccc-------cccccccccc---
Q 007860 505 NLLEGRVPEELYSIGVHGGAFDLS-------------VVYICCIRRGRNDYDF----GLP-------QDLMSLSAKR--- 557 (587)
Q Consensus 505 N~l~g~ip~~l~~~~~~L~~l~Ls-------------l~~L~~L~L~~N~l~~----~~p-------~~L~~L~l~~--- 557 (587)
| +. .++...+.. ..|+.+.+. +.+|+.+.+.+|.+.. .++ .+|+.+.+..
T Consensus 236 ~-l~-~I~~~aF~~-~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~ 312 (401)
T 4fdw_A 236 N-VS-TIGQEAFRE-SGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIR 312 (401)
T ss_dssp T-CC-EECTTTTTT-CCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCC
T ss_pred C-cc-Ccccccccc-CCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceE
Confidence 4 43 455554444 346666554 4567777776665430 111 3455555442
Q ss_pred ----cccCCCCCCcEEEccCCCCCCCCCC
Q 007860 558 ----NRYQRQKSLMLLEMESQHAKGLPTL 582 (587)
Q Consensus 558 ----N~i~~l~~L~~L~Ls~N~l~~~P~~ 582 (587)
..|.++.+|+.+.|.. +++.++..
T Consensus 313 ~I~~~aF~~c~~L~~l~lp~-~l~~I~~~ 340 (401)
T 4fdw_A 313 ILGQGLLGGNRKVTQLTIPA-NVTQINFS 340 (401)
T ss_dssp EECTTTTTTCCSCCEEEECT-TCCEECTT
T ss_pred EEhhhhhcCCCCccEEEECc-cccEEcHH
Confidence 3457788888888854 36655544
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.39 E-value=0.00018 Score=74.32 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=93.0
Q ss_pred eeEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCC--C-CCccEEeccC--CcCCcc-----CCccc--
Q 007860 424 VVISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLG--Q-QSLVRLDLSD--NQFTGS-----IPDSL-- 491 (587)
Q Consensus 424 ~~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~--~-~~L~~L~Ls~--N~l~g~-----iP~~l-- 491 (587)
+.|+.|+|+++.-. .++. + .+++|+.|+|..+.+.......++ . ++|+.|+|+. |...|. +...+
T Consensus 172 P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~ 248 (362)
T 2ra8_A 172 PLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK 248 (362)
T ss_dssp TTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT
T ss_pred CCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhc
Confidence 56899999887311 2333 3 389999999999887643333333 4 8999999863 222221 11122
Q ss_pred cCCCCCCEEEccCCcCcccCchhhhhcccCCceeeccccccceEECCCCccccc----cc------cccccccccccccC
Q 007860 492 TSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFG----LP------QDLMSLSAKRNRYQ 561 (587)
Q Consensus 492 ~~l~~L~~L~Ls~N~l~g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~----~p------~~L~~L~l~~N~i~ 561 (587)
..+++|++|+|++|.+....+..+..... +++|++|+|+.|.+... ++ +.|+.|++++|.|+
T Consensus 249 ~~~p~Lr~L~L~~~~i~~~~~~~la~a~~--------~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 249 DRFPNLKWLGIVDAEEQNVVVEMFLESDI--------LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp TTCTTCCEEEEESCTTHHHHHHHHHHCSS--------GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred CCCCCcCEEeCCCCCCchHHHHHHHhCcc--------CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 35789999999999997555555554322 45788888888887641 22 46888999999883
Q ss_pred -----CCCC--CcEEEccCCC
Q 007860 562 -----RQKS--LMLLEMESQH 575 (587)
Q Consensus 562 -----~l~~--L~~L~Ls~N~ 575 (587)
.+.. ..+++++.++
T Consensus 321 d~~~~~l~~alg~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSLPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHCCSEEECCSBC
T ss_pred HHHHHHHHHHcCCEEEecCCc
Confidence 1221 3678888876
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.33 E-value=0.00096 Score=69.94 Aligned_cols=150 Identities=13% Similarity=0.087 Sum_probs=90.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
.|+.+.|..+ +...-...|.++++|+.++|..| ++ .++..... .+|+.+.|. +.++..-+..|..+++|+.+++.
T Consensus 204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~ 279 (401)
T 4fdw_A 204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTY 279 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEE
T ss_pred ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-CccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeC
Confidence 3566677633 55455567778888888888764 44 45554444 778888884 44553335567788888888888
Q ss_pred CCcCc----ccCchhhhhcccCCceeeccccccceEECCCCccccccccccccccc-------cccccCCCCCCcEEEcc
Q 007860 504 NNLLE----GRVPEELYSIGVHGGAFDLSVVYICCIRRGRNDYDFGLPQDLMSLSA-------KRNRYQRQKSLMLLEME 572 (587)
Q Consensus 504 ~N~l~----g~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N~l~~~~p~~L~~L~l-------~~N~i~~l~~L~~L~Ls 572 (587)
+|.+. ..++...+....+|+.+.|. ++++. +....|.+ -.+|+.+.+ ..+-|.++ +|+.+.++
T Consensus 280 ~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~--I~~~aF~~--c~~L~~l~lp~~l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 280 GSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI--LGQGLLGG--NRKVTQLTIPANVTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp SSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE--ECTTTTTT--CCSCCEEEECTTCCEECTTSSSSS-CCCEEEEC
T ss_pred CccccCCcccEECHHHhhCCccCCeEEeC-CceEE--EhhhhhcC--CCCccEEEECccccEEcHHhCCCC-CCCEEEEc
Confidence 87764 12444444433356666665 22332 22223322 123334433 23456778 99999999
Q ss_pred CCCCCCCCCCCC
Q 007860 573 SQHAKGLPTLPL 584 (587)
Q Consensus 573 ~N~l~~~P~~~~ 584 (587)
+|.+..++...+
T Consensus 354 ~n~~~~l~~~~F 365 (401)
T 4fdw_A 354 GTTPPQVFEKVW 365 (401)
T ss_dssp CSSCCBCCCSSC
T ss_pred CCCCcccccccc
Confidence 998887776543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=96.38 E-value=0.00056 Score=62.77 Aligned_cols=82 Identities=16% Similarity=0.146 Sum_probs=57.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCC-CCCCCCCCCCC-----CCccEEeccCCc-CCccCCccccCCCCC
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNS-LGGTLPSGLGQ-----QSLVRLDLSDNQ-FTGSIPDSLTSSSKL 497 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~-l~g~ip~~~~~-----~~L~~L~Ls~N~-l~g~iP~~l~~l~~L 497 (587)
.|+.|||+++.++..--..+..+++|+.|+|+++. ++..--..++. ++|++|+|+++. ++..-=..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 58999999999875545567889999999999985 55321111221 258899998874 663222346678888
Q ss_pred CEEEccCCc
Q 007860 498 QLVLLNNNL 506 (587)
Q Consensus 498 ~~L~Ls~N~ 506 (587)
++|+|+++.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 888888875
No 156
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.31 E-value=0.00085 Score=62.77 Aligned_cols=81 Identities=12% Similarity=0.185 Sum_probs=57.6
Q ss_pred eEEEEEcCCC-CCcc----cCchhhcCCCCCCEEEccCCCCCCCCCCCCC----C-CCccEEeccCCcCCcc----CCcc
Q 007860 425 VISQIDLGSQ-GLKG----YISDKISLLSNLVNLNLSTNSLGGTLPSGLG----Q-QSLVRLDLSDNQFTGS----IPDS 490 (587)
Q Consensus 425 ~l~~L~L~~n-~l~g----~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~----~-~~L~~L~Ls~N~l~g~----iP~~ 490 (587)
.|+.|+|++| .|.. .+-+.+..-+.|+.|+|++|.+...--..++ . +.|++|+|+.|+|... +-+.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~a 121 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRS 121 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHH
Confidence 3677899885 7652 3455677778899999999998743333333 3 7899999999998732 3334
Q ss_pred ccCCCCCCEEEccCC
Q 007860 491 LTSSSKLQLVLLNNN 505 (587)
Q Consensus 491 l~~l~~L~~L~Ls~N 505 (587)
+..-+.|+.|+|++|
T Consensus 122 L~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQ 136 (197)
T ss_dssp TTTTCCCSEEECCCC
T ss_pred HhhCCceeEEECCCC
Confidence 556677999999865
No 157
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.16 E-value=0.0095 Score=51.72 Aligned_cols=38 Identities=24% Similarity=0.229 Sum_probs=23.2
Q ss_pred CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCc
Q 007860 471 QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 471 ~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~ 508 (587)
.+|++|+|++|+|+..-+..|..+++|+.|+|++|.+.
T Consensus 31 ~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 31 VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 34566666666666322334556677777777777664
No 158
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.90 E-value=0.0067 Score=52.68 Aligned_cols=54 Identities=28% Similarity=0.458 Sum_probs=37.6
Q ss_pred EEEcCCCCCc-ccCchhhcCCCCCCEEEccCCCCCCCCCCCC-CC-CCccEEeccCCcCC
Q 007860 428 QIDLGSQGLK-GYISDKISLLSNLVNLNLSTNSLGGTLPSGL-GQ-QSLVRLDLSDNQFT 484 (587)
Q Consensus 428 ~L~L~~n~l~-g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-~~-~~L~~L~Ls~N~l~ 484 (587)
.++.++++++ ..+|..+ -.+|+.|+|++|+|+ .+|... .. ++|+.|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 3566666665 3455432 236889999999998 566554 44 88999999999775
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.37 E-value=0.0068 Score=56.57 Aligned_cols=94 Identities=13% Similarity=0.198 Sum_probs=62.6
Q ss_pred CchhhcCCCCCCEEEccCC-CCCCC----CCCCCCC-CCccEEeccCCcCCcc----CCccccCCCCCCEEEccCCcCcc
Q 007860 440 ISDKISLLSNLVNLNLSTN-SLGGT----LPSGLGQ-QSLVRLDLSDNQFTGS----IPDSLTSSSKLQLVLLNNNLLEG 509 (587)
Q Consensus 440 ~p~~l~~l~~L~~L~Ls~N-~l~g~----ip~~~~~-~~L~~L~Ls~N~l~g~----iP~~l~~l~~L~~L~Ls~N~l~g 509 (587)
+..-+.+-+.|+.|+|++| .+... +-+.+.. ..|+.|+|++|++... +-+.+..-+.|++|+|+.|.|..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3334556688999999986 77521 3334555 8899999999999732 23344456889999999999974
Q ss_pred cCchhhhhcccCCceeeccccccceEECCCC
Q 007860 510 RVPEELYSIGVHGGAFDLSVVYICCIRRGRN 540 (587)
Q Consensus 510 ~ip~~l~~~~~~L~~l~Lsl~~L~~L~L~~N 540 (587)
.--..+.+.... ...|+.|+|++|
T Consensus 113 ~Ga~ala~aL~~-------N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLV-------TQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTT-------TCCCSEEECCCC
T ss_pred HHHHHHHHHHhh-------CCceeEEECCCC
Confidence 322333333221 345788888754
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=95.27 E-value=0.014 Score=53.49 Aligned_cols=57 Identities=5% Similarity=0.058 Sum_probs=28.9
Q ss_pred CCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCc-CCccCCccccCC----CCCCEEEccCC
Q 007860 449 NLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQ-FTGSIPDSLTSS----SKLQLVLLNNN 505 (587)
Q Consensus 449 ~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~-l~g~iP~~l~~l----~~L~~L~Ls~N 505 (587)
.|+.|||+++.++..--..+.. ++|++|+|+++. ++..-=..++.+ ++|++|+|+++
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence 5667777776665332233444 666666666653 442111123332 24666666665
No 161
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.19 E-value=0.61 Score=48.00 Aligned_cols=86 Identities=14% Similarity=0.344 Sum_probs=50.6
Q ss_pred eEEEEEcCCCCCcccCchhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEc
Q 007860 425 VISQIDLGSQGLKGYISDKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLL 502 (587)
Q Consensus 425 ~l~~L~L~~n~l~g~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~L 502 (587)
.|+.+.+..+... .-...+.+++.|+.+.+. +.++ .+++. +.. .+|+.+.|..+ ++-.-..+|..+.+|+.+.|
T Consensus 266 ~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~i 341 (394)
T 4gt6_A 266 YLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAI 341 (394)
T ss_dssp SCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEE
T ss_pred cccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEE
Confidence 3555666544332 334566777888888875 3455 44443 334 77888888754 44222346777788888887
Q ss_pred cCCcCcccCchhhh
Q 007860 503 NNNLLEGRVPEELY 516 (587)
Q Consensus 503 s~N~l~g~ip~~l~ 516 (587)
..+ +. .|....+
T Consensus 342 p~s-v~-~I~~~aF 353 (394)
T 4gt6_A 342 PSS-VT-KIPESAF 353 (394)
T ss_dssp CTT-CC-BCCGGGG
T ss_pred Ccc-cC-EEhHhHh
Confidence 544 54 4554443
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.59 E-value=0.64 Score=47.83 Aligned_cols=85 Identities=6% Similarity=0.119 Sum_probs=55.6
Q ss_pred CchhhcCCCCCCEEEccCCCCCCCCCCCCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhc
Q 007860 440 ISDKISLLSNLVNLNLSTNSLGGTLPSGLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSI 518 (587)
Q Consensus 440 ~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~ 518 (587)
-...|.++..|+.+.+..+... .-...+.. .+|+.+.+.. .++..-...|..+.+|+.++|..+ ++ .|....+.-
T Consensus 257 ~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~aF~~ 332 (394)
T 4gt6_A 257 ETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDAFAG 332 (394)
T ss_dssp CTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTT
T ss_pred ccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhHhhC
Confidence 3456788999999999776543 33334445 8999999964 555233346788999999999765 54 455554443
Q ss_pred ccCCceeecc
Q 007860 519 GVHGGAFDLS 528 (587)
Q Consensus 519 ~~~L~~l~Ls 528 (587)
..+|+.+.+.
T Consensus 333 C~~L~~i~ip 342 (394)
T 4gt6_A 333 CEQLERIAIP 342 (394)
T ss_dssp CTTCCEEEEC
T ss_pred CCCCCEEEEC
Confidence 2346655553
No 163
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=89.62 E-value=7.3 Score=33.71 Aligned_cols=93 Identities=13% Similarity=0.097 Sum_probs=55.3
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEee
Q 007860 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (587)
Q Consensus 87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~ 166 (587)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|+|||..+......-.+.+-.........+.-+.|.=.|.|..
T Consensus 39 g~~v~~~V~v~~aG~Y~l~~ryan~~~----~~~~~~l~VNG~~~~~~v~~p~Tg~w~~w~~~~~~v~L~aG~ntI~l~~ 114 (144)
T 2w47_A 39 GGYIEWNVNAPSSGSYALIFRYANGTT----ANRPMRITVNGNIVKPSMDFVSTGAWTTWNEAGIVANLNQGNNVIRATA 114 (144)
T ss_dssp TCEEEEEEEESSSEEEEEEEEEECCSS----SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCeEEEEEECCeEeeeEEEecCCCCCCeeEEEEEEEEECCCccEEEEEE
Confidence 444588888878899999999875432 2578999999986433222211111111111222233455554555553
Q ss_pred C-CCCCceeeeEEeEecC
Q 007860 167 F-ATDPPVIASLEVQQID 183 (587)
Q Consensus 167 ~-~~~~pfIn~iEi~~l~ 183 (587)
. ..+.|-|.-|+|.+.+
T Consensus 115 ~~~~g~~niD~i~v~~~~ 132 (144)
T 2w47_A 115 IASDGGPNVDYLKVFSAN 132 (144)
T ss_dssp CSTTCCCEEEEEEEEECT
T ss_pred eCCCCCEEEeEEEEEeCC
Confidence 2 3456999999998754
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.48 E-value=1.1 Score=45.48 Aligned_cols=60 Identities=18% Similarity=0.197 Sum_probs=26.3
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 442 DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 442 ~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
..+.++.+|+.+.+..+ +. .++.. +.. .+|+.+.+.++.++-.-...|.++.+|+.+.|.
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp 318 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP 318 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred cccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence 34444555555555332 22 22222 222 455555555554442222344455555555554
No 165
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=86.44 E-value=2.5 Score=43.22 Aligned_cols=57 Identities=18% Similarity=0.108 Sum_probs=26.2
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCCCC-CCC-CCccEEeccCCcCCccCCccccCCCCCCEEEcc
Q 007860 442 DKISLLSNLVNLNLSTNSLGGTLPSG-LGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLN 503 (587)
Q Consensus 442 ~~l~~l~~L~~L~Ls~N~l~g~ip~~-~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls 503 (587)
..+..+..++.+.+..+. ++.. +.. .+|+.+.+..+ ++..-...|..+++|+.++|.
T Consensus 270 ~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp 328 (394)
T 4fs7_A 270 SLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLP 328 (394)
T ss_dssp CTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCC
T ss_pred cccccccccceeccCcee----eccccccccccccccccccc-cceechhhhcCCCCCCEEEeC
Confidence 344455555555544432 2222 222 55666655543 331222345556666666664
No 166
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=86.20 E-value=12 Score=31.50 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=51.3
Q ss_pred CCCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEe
Q 007860 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (587)
Q Consensus 86 ~~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~ 165 (587)
.|..-.|++.+...|.|.|++.+..+. + ..+.++|++||.........-.+.+-....-....+.-+.|.=.|.|.
T Consensus 37 ~g~~v~~~V~v~~aG~Y~l~~rya~~~--~--~~~~~~l~VnG~~~~~~v~~p~tg~W~~w~~~~~~v~L~aG~ntI~l~ 112 (127)
T 2vzp_A 37 AGSSVEWTVTVPSAGTYDVVVRYANGT--T--TSRPLDFSVNGSISASGVAFGSTGTWPAWTTKTVRVTLAAGVNKIKAV 112 (127)
T ss_dssp TTCEEEEEEEESSSEEEEEEEEEECCS--S--SCCCEEEEETTEEEEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCCEEEEEEEcCCCCEEEEEEEEEcCC--C--CCeEEEEEECCEEeeeEEEecCCCCCCceEEEEEEEEECCCceEEEEE
Confidence 344558999887889999999987653 1 257899999998753322221111111111112223335555445554
Q ss_pred eC-CCCCceeeeEEe
Q 007860 166 SF-ATDPPVIASLEV 179 (587)
Q Consensus 166 ~~-~~~~pfIn~iEi 179 (587)
.. ..+.|-|.-|+|
T Consensus 113 ~~~~~~~~niD~i~v 127 (127)
T 2vzp_A 113 ATTANGGPNVDKITL 127 (127)
T ss_dssp ECSTTCCCEEEEEEC
T ss_pred EeCCCCCeEEEEEEC
Confidence 42 345677777764
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=85.23 E-value=1.4 Score=44.89 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=8.4
Q ss_pred ccCCCCCCEEEccCCcCc
Q 007860 491 LTSSSKLQLVLLNNNLLE 508 (587)
Q Consensus 491 l~~l~~L~~L~Ls~N~l~ 508 (587)
|..+++|+.+.+.++.+.
T Consensus 282 F~~c~~L~~i~l~~~~i~ 299 (379)
T 4h09_A 282 CSGCSNLTKVVMDNSAIE 299 (379)
T ss_dssp TTTCTTCCEEEECCTTCC
T ss_pred cccccccccccccccccc
Confidence 344444555554444443
No 168
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=83.72 E-value=16 Score=31.61 Aligned_cols=92 Identities=11% Similarity=-0.021 Sum_probs=53.6
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEee
Q 007860 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYS 166 (587)
Q Consensus 87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~ 166 (587)
|..-.|++.+.+.|.|.|++.+.-+.. ..+.++|++||...-. ...-.+.+-....-....+.-+.|.=.|.|..
T Consensus 38 G~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~~~-v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~~ 112 (145)
T 2w3j_A 38 GASIVWSLSAASAKTYTAQIRFGNGGT----SARRATVVVNDSQIKT-LDFPTNSNWTQWQTVNVDIPLKAGTNSIKLVA 112 (145)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTEEEEE-ECCCCCSCTTSCEEEEEEEEECSEEEEEEEEE
T ss_pred CCEEEEEEECCCCeEEEEEEEEECCCC----CCeEEEEEECCeEeeE-EEecCCCCCCeeEEEEEEEEECCCceEEEEEE
Confidence 444588888878899999999874422 2578999999976522 11111111111111122233355554555554
Q ss_pred C-CCCCceeeeEEeEecC
Q 007860 167 F-ATDPPVIASLEVQQID 183 (587)
Q Consensus 167 ~-~~~~pfIn~iEi~~l~ 183 (587)
. +.+.|-|.-|+|.+.+
T Consensus 113 ~~~~g~~niD~i~v~~~~ 130 (145)
T 2w3j_A 113 ETADGLANIDSIRVTGNG 130 (145)
T ss_dssp CSTTCCCEEEEEEECSTT
T ss_pred ecCcCCEEEEEEEEEcCC
Confidence 3 2466999999986543
No 169
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=78.39 E-value=2.3 Score=43.53 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=44.5
Q ss_pred hhhcCCCCCCEEEccCCCCCCCCCC-CCCC-CCccEEeccCCcCCccCCccccCCCCCCEEEccCCcCcccCchhhhhcc
Q 007860 442 DKISLLSNLVNLNLSTNSLGGTLPS-GLGQ-QSLVRLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIG 519 (587)
Q Consensus 442 ~~l~~l~~L~~L~Ls~N~l~g~ip~-~~~~-~~L~~L~Ls~N~l~g~iP~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~~~ 519 (587)
..+..+.+|+.+.+..+ +. .|++ .+.. .+|+.++|..+ ++-.-..+|.++++|+.+++..| +. .++...+...
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C 365 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGC 365 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTC
T ss_pred ccccccccccccccccc-cc-eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCC
Confidence 34566777777777654 44 3333 3444 77777777643 54222345667777777777655 44 4544433322
Q ss_pred cCCceeec
Q 007860 520 VHGGAFDL 527 (587)
Q Consensus 520 ~~L~~l~L 527 (587)
.+|+.+++
T Consensus 366 ~~L~~i~l 373 (394)
T 4fs7_A 366 INLKKVEL 373 (394)
T ss_dssp TTCCEEEE
T ss_pred CCCCEEEE
Confidence 23444433
No 170
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=75.90 E-value=14 Score=32.56 Aligned_cols=91 Identities=11% Similarity=0.081 Sum_probs=51.7
Q ss_pred cceE-eecCCCceEEEEEEeecCCC------CCCCCCCceEEEECCEEEEe-cCCCCccccCCCceEEEEEEEecCCeeE
Q 007860 90 NCYI-IPNLPPGRYYIRTFTVYDNY------DGKSHSPSFDVSVEGTLVFS-WRSPWPEGLARDGAYSDLFAFVKDGELD 161 (587)
Q Consensus 90 ~~Y~-~pv~~~~~ylvRl~F~~~n~------~~~~~~~~F~v~~~~~~~l~-~~~~~~~~~~~~~~~~e~i~~~~~~~l~ 161 (587)
-.|+ +.+.+.|.|.|++.|.-+.. ......+..+|.|||...-. .|. .+..-....-..+.+.-..|.=.
T Consensus 49 vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~fp--~Tg~W~~~~~~tv~V~L~aG~Nt 126 (156)
T 2wz8_A 49 LQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHYFF--NTRGWNTYRTDIIDVYLNAGNNT 126 (156)
T ss_dssp EEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEEEC--CCSSTTCCEEEEEEEEECSEEEE
T ss_pred EEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEEeC--CCCCCCcceEEEEEEEECCCceE
Confidence 3677 77777899999999975531 11112678999998754111 121 11100111112223334556667
Q ss_pred EEEeeC--CCCCceeeeEEeEec
Q 007860 162 LCFYSF--ATDPPVIASLEVQQI 182 (587)
Q Consensus 162 i~~~~~--~~~~pfIn~iEi~~l 182 (587)
|.|... ....|-|-.|+|.+.
T Consensus 127 I~~~~~~~~~~~pdiD~i~v~~~ 149 (156)
T 2wz8_A 127 IRFYNGTSGSYAPNIDKIAIAAL 149 (156)
T ss_dssp EEEECCSTTCBCCEEEEEEEEC-
T ss_pred EEEEecCCCCCCcEEEEEEEecc
Confidence 888765 334589999998654
No 171
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=75.14 E-value=20 Score=30.71 Aligned_cols=91 Identities=14% Similarity=0.011 Sum_probs=50.8
Q ss_pred CCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEE-EecCCCCccccCCCceEEEEEEEecCCeeEEEEe
Q 007860 87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLV-FSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFY 165 (587)
Q Consensus 87 ~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~-l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~ 165 (587)
|..-.|++.+.+.|.|.|++.+.-+.. ..+..+|++||... ......-.+.+-....-....+.-+.|.=.|.|.
T Consensus 38 g~~v~~~V~v~~aG~Y~l~~ryang~~----~~r~~~l~VNG~~~g~~~v~~p~Tg~W~~w~t~~~~v~L~aG~ntI~l~ 113 (139)
T 2w87_A 38 GAAVVWAIDATSSGRRTLTIRYANGGT----ANRNGSLVINGGSNGNYTVSLPTTGAWTTWQTATIDVDLVQGNNIVQLS 113 (139)
T ss_dssp TCEEEEEEEESSCEEEEEEEEEECCSS----SCCCEEEEETTTTTCEEEECCCCCSSTTCCEEEEEEEEECSEEEEEEEE
T ss_pred CCEEEEEEECCCCcEEEEEEEEECCCC----CCceEEEEECCEEcceeEEEecCCCCCCccEEEEEEEEECCCceEEEEE
Confidence 334478888877899999999875431 24689999987542 1111111111111111122223334555455555
Q ss_pred eCC-CCCceeeeEEeEe
Q 007860 166 SFA-TDPPVIASLEVQQ 181 (587)
Q Consensus 166 ~~~-~~~pfIn~iEi~~ 181 (587)
... .+.|-|.-|+|.+
T Consensus 114 ~~~~~g~~niD~i~v~~ 130 (139)
T 2w87_A 114 ATTAEGLPNIDSLSVVG 130 (139)
T ss_dssp ESSTTCCCEEEEEEEES
T ss_pred EcCCCCCEEEEEEEEec
Confidence 433 4679999999864
No 172
>2o14_A Hypothetical protein YXIM; NESG, X-RAY, SR595, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: b.18.1.32 c.23.10.8
Probab=70.54 E-value=32 Score=34.79 Aligned_cols=79 Identities=20% Similarity=0.288 Sum_probs=52.5
Q ss_pred cceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCEEEEecCCCCccccCCCceEEEEEEEecCCeeEEEEeeCCC
Q 007860 90 NCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFAT 169 (587)
Q Consensus 90 ~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~~~l~~~~~~~~~~~~~~~~~e~i~~~~~~~l~i~~~~~~~ 169 (587)
+++.+.+ +.|.|.|.+.+--+ ..=.|...+...+. .. .+......|.+.+.++.+.+.+.....
T Consensus 78 ~~f~v~~-~~g~Y~v~v~~g~~--------~~~~v~~e~~~~~~-----~~--~g~~~~~~~~v~~~~g~~~l~~~~~~~ 141 (375)
T 2o14_A 78 NTFNVDL-PNGLYEVKVTLGNT--------ARASVAAEGVFQVI-----NM--TGDGAEDTFQIPVTDGQLNLLVTEGKA 141 (375)
T ss_dssp CCEEEEC-CSEEEEEEEEESSC--------SEEEEEETTEEEEE-----EE--ESTTCEEEEEEEECSSEEEEEEEESST
T ss_pred eEEEEEc-CCCceEEEEEecCC--------cceEEEEcceEEEE-----ec--CCCcEEEEEEEEeeCCeEEEeeeeccC
Confidence 4555666 68999999998643 12334455554333 11 233455678888999999998775433
Q ss_pred C-CceeeeEEeEecCC
Q 007860 170 D-PPVIASLEVQQIDP 184 (587)
Q Consensus 170 ~-~pfIn~iEi~~l~~ 184 (587)
+ .+++++||+.+.+.
T Consensus 142 g~~~~l~~i~v~~~~~ 157 (375)
T 2o14_A 142 GTAFTLSALKIKKLSD 157 (375)
T ss_dssp TSCCEEEEEEEEEEES
T ss_pred CCCcccceEEEeccCC
Confidence 3 58999999987654
No 173
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A
Probab=55.09 E-value=43 Score=28.63 Aligned_cols=39 Identities=26% Similarity=0.423 Sum_probs=30.5
Q ss_pred cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCcc
Q 007860 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKN 316 (587)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~ 316 (587)
..++|.+.+...+.|.+.+.++.- ..+.|.+.|+|||..
T Consensus 40 ~~v~~~V~v~~aG~Y~l~~ryan~-----~~~~~~~~l~VNG~~ 78 (144)
T 2w47_A 40 GYIEWNVNAPSSGSYALIFRYANG-----TTANRPMRITVNGNI 78 (144)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECC-----SSSCCCEEEEETTEE
T ss_pred CEEEEEEECCCCcEEEEEEEEECC-----CCCCeEEEEEECCeE
Confidence 458898888777899999998852 124688999999985
No 174
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A*
Probab=55.08 E-value=39 Score=28.12 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=31.3
Q ss_pred cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccc
Q 007860 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (587)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l 317 (587)
..++|.+.+...+.|.+.++++.-. ...|.+.|+|||...
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~rya~~~-----~~~~~~~l~VnG~~~ 78 (127)
T 2vzp_A 39 SSVEWTVTVPSAGTYDVVVRYANGT-----TTSRPLDFSVNGSIS 78 (127)
T ss_dssp CEEEEEEEESSSEEEEEEEEEECCS-----SSCCCEEEEETTEEE
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCC-----CCCeEEEEEECCEEe
Confidence 4588988887788999999998622 236788999999854
No 175
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium}
Probab=54.61 E-value=34 Score=29.44 Aligned_cols=44 Identities=20% Similarity=0.367 Sum_probs=32.8
Q ss_pred cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccccccc
Q 007860 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVD 321 (587)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l~~~d 321 (587)
..++|.+.+...+.|.+.+.++.- ..+.|.++|+|||.....+.
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang-----~~~~r~~~l~VNG~~~~~v~ 82 (145)
T 2w3j_A 39 ASIVWSLSAASAKTYTAQIRFGNG-----GTSARRATVVVNDSQIKTLD 82 (145)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECC-----SSSCCCEEEEETTEEEEEEC
T ss_pred CEEEEEEECCCCeEEEEEEEEECC-----CCCCeEEEEEECCeEeeEEE
Confidence 458898888778899999998831 12468899999998554443
No 176
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A
Probab=48.40 E-value=60 Score=27.60 Aligned_cols=40 Identities=10% Similarity=0.152 Sum_probs=30.9
Q ss_pred cceEEEEecCCCCcEEEEEEeeecccCCCCCceeEEEEEECCccc
Q 007860 273 GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNV 317 (587)
Q Consensus 273 ~~lt~~~~v~~~~~y~v~lhF~ei~~~~~~~~~r~F~V~in~~~l 317 (587)
..++|.+.+...+.|.+.++++.-. ...|..+|+|||...
T Consensus 39 ~~v~~~V~v~~aG~Y~l~~ryang~-----~~~r~~~l~VNG~~~ 78 (139)
T 2w87_A 39 AAVVWAIDATSSGRRTLTIRYANGG-----TANRNGSLVINGGSN 78 (139)
T ss_dssp CEEEEEEEESSCEEEEEEEEEECCS-----SSCCCEEEEETTTTT
T ss_pred CEEEEEEECCCCcEEEEEEEEECCC-----CCCceEEEEECCEEc
Confidence 4588888887788999999987521 235889999999855
No 177
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum}
Probab=47.29 E-value=86 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.171 Sum_probs=34.3
Q ss_pred cceEEE-EecCCCCcEEEEEEeeecccC-----CCCCceeEEEEEECCccccccc
Q 007860 273 GAIQYN-LAVDAKLDYLIWFHFAEIDSS-----VTKAGQRVFDILVNDKNVTRVD 321 (587)
Q Consensus 273 ~~lt~~-~~v~~~~~y~v~lhF~ei~~~-----~~~~~~r~F~V~in~~~l~~~d 321 (587)
+.++|. +.+...+.|.+.++|+.-... ..+...|...|.|||.....+.
T Consensus 47 ~~vtf~~V~~~~aG~Y~l~irYang~~~~~~~y~~~~~~r~~~v~VNG~~~~~v~ 101 (156)
T 2wz8_A 47 NYLQFNNVYVPQAGTYRMVVQFANAEVFGQHSYNNNVVDRYCSISVNGGPEKGHY 101 (156)
T ss_dssp SCEEEEEEEESSCEEEEEEEEEECCCBC-------CBCCEEEEEEETTCCCEEEE
T ss_pred CEEEEEEEecCCCcEEEEEEEEECCCcccccccCCccCcceEEEEECCceeeEEE
Confidence 468898 888778999999999864310 0012379999999998543343
No 178
>2y7l_A NT_ALS9-2, agglutinin-like ALS9 protein; cell adhesion, adhesin, peptide binding protein; 1.49A {Candida albicans} PDB: 2y7m_A 2y7n_A 2y7o_A 2ylh_A
Probab=20.51 E-value=64 Score=31.61 Aligned_cols=62 Identities=11% Similarity=0.108 Sum_probs=40.6
Q ss_pred EEecCCeeEEEEeeCCCCC-ceeeeEEeEecCCCCccccCcCccceEeeeeeccCCCCCCCCCCCCCCCCCCcccccCC
Q 007860 153 AFVKDGELDLCFYSFATDP-PVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA 230 (587)
Q Consensus 153 ~~~~~~~l~i~~~~~~~~~-pfIn~iEi~~l~~~~y~~~~~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~~R~W~~d~ 230 (587)
+.-.+..+.|+|.+.+.|. |||+++...+.. +. ..+....+.-|.+.. ..++++.+.|.+++
T Consensus 237 ~tCss~~i~It~~niPaGYRpfvdal~~~~~~-~~---------~~~~y~~~YtC~~~~------~~~~~~~~~w~~y~ 299 (312)
T 2y7l_A 237 KTCTSTSITVEFQNVPAGYRPFVDAYISAENI-DK---------YTLTYANEYTCENGN------TVVDPFTLTWWGYK 299 (312)
T ss_dssp EEECSSEEEEEECCBCTTEEEEEEEEEEESST-TE---------EEEEECCEEEETTSC------EEECCEEEEEECCC
T ss_pred cEEcCCEEEEEEccCCCCceEEEEEEEecCCC-ce---------EEEEEEEEEEECCCc------eeecceeEEecccc
Confidence 3467789999999888885 999999765431 11 113333344455432 12678899998865
No 179
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A*
Probab=20.45 E-value=4.1e+02 Score=22.82 Aligned_cols=39 Identities=21% Similarity=0.190 Sum_probs=29.4
Q ss_pred CCCCcceEeecCCCceEEEEEEeecCCCCCCCCCCceEEEECCE
Q 007860 86 SGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGT 129 (587)
Q Consensus 86 ~~~~~~Y~~pv~~~~~ylvRl~F~~~n~~~~~~~~~F~v~~~~~ 129 (587)
.|..-+|++.+.+.|.|-|.+....+. . ...+.|.+++.
T Consensus 65 ~Gdwl~y~V~v~~aG~Y~i~~rvas~~-~----g~~i~l~vdg~ 103 (160)
T 2cdp_A 65 QGDYADYTIAVAQAGNYTISYQAGSGV-T----GGSIEFLVNEN 103 (160)
T ss_dssp TTCEEEEEEEESSCEEEEEEEEEEBSS-S----SCEEEEEEECS
T ss_pred CCCEEEEEEEcCCCcEEEEEEEEEcCC-C----CceEEEEECCC
Confidence 455569999997889999999887543 2 24688888874
Done!