Query 007861
Match_columns 587
No_of_seqs 233 out of 2973
Neff 9.5
Searched_HMMs 46136
Date Thu Mar 28 16:19:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007861.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/007861hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 5.8E-64 1.3E-68 538.6 54.7 495 63-561 23-557 (557)
2 PRK15049 L-asparagine permease 100.0 6.8E-55 1.5E-59 464.5 47.7 367 64-447 24-408 (499)
3 PRK11387 S-methylmethionine tr 100.0 4.8E-53 1E-57 449.6 45.6 424 64-558 10-459 (471)
4 PRK10249 phenylalanine transpo 100.0 1.1E-52 2.3E-57 444.7 46.7 367 61-446 14-396 (458)
5 COG0833 LysP Amino acid transp 100.0 1.9E-53 4.2E-58 429.4 37.9 401 65-534 41-466 (541)
6 PRK10746 putative transport pr 100.0 1.5E-52 3.3E-57 443.0 46.5 424 62-558 4-452 (461)
7 COG1113 AnsP Gamma-aminobutyra 100.0 5.1E-53 1.1E-57 417.8 35.4 426 62-560 7-455 (462)
8 TIGR01773 GABAperm gamma-amino 100.0 1.1E-51 2.4E-56 437.8 45.1 373 63-454 7-397 (452)
9 TIGR00908 2A0305 ethanolamine 100.0 1.8E-51 4E-56 435.2 46.4 423 63-561 2-436 (442)
10 PRK10238 aromatic amino acid t 100.0 1.8E-51 4E-56 435.0 46.0 368 63-449 7-390 (456)
11 PRK11357 frlA putative fructos 100.0 9.6E-52 2.1E-56 437.4 43.8 426 62-559 2-439 (445)
12 KOG1289 Amino acid transporter 100.0 1.5E-52 3.3E-57 421.7 35.0 466 47-570 29-524 (550)
13 PRK10655 potE putrescine trans 100.0 1.4E-51 3E-56 435.6 44.1 372 66-455 4-386 (438)
14 TIGR00909 2A0306 amino acid tr 100.0 4.7E-51 1E-55 431.1 46.4 426 66-554 1-429 (429)
15 PRK10836 lysine transporter; P 100.0 7E-51 1.5E-55 434.7 46.3 401 62-532 9-435 (489)
16 PRK10580 proY putative proline 100.0 8.7E-51 1.9E-55 431.0 46.6 367 62-447 3-387 (457)
17 PRK10644 arginine:agmatin anti 100.0 7E-51 1.5E-55 430.6 45.5 419 64-558 4-432 (445)
18 PRK11049 D-alanine/D-serine/gl 100.0 3.1E-50 6.8E-55 427.5 45.0 368 64-450 16-404 (469)
19 TIGR00907 2A0304 amino acid pe 100.0 4.4E-50 9.6E-55 429.1 43.2 447 62-563 6-482 (482)
20 PRK10435 cadB lysine/cadaverin 100.0 5.1E-50 1.1E-54 422.1 43.0 361 66-443 3-377 (435)
21 TIGR03428 ureacarb_perm permea 100.0 1.9E-49 4.1E-54 422.5 46.2 418 62-508 7-450 (475)
22 TIGR00913 2A0310 amino acid pe 100.0 9.2E-49 2E-53 418.8 46.0 362 67-447 1-394 (478)
23 TIGR00905 2A0302 transporter, 100.0 7.9E-49 1.7E-53 417.5 43.2 420 66-558 5-439 (473)
24 KOG1287 Amino acid transporter 100.0 1.7E-49 3.7E-54 400.0 35.4 403 62-478 6-417 (479)
25 TIGR00911 2A0308 L-type amino 100.0 1.1E-48 2.3E-53 419.9 43.6 381 62-456 36-426 (501)
26 PRK10197 gamma-aminobutyrate t 100.0 1.7E-48 3.8E-53 411.1 44.2 350 78-446 2-369 (446)
27 KOG1286 Amino acid transporter 100.0 3.3E-50 7.3E-55 422.0 30.6 483 64-558 26-551 (554)
28 PRK11021 putative transporter; 100.0 1.2E-47 2.6E-52 401.8 45.1 356 70-445 1-362 (410)
29 TIGR03810 arg_ornith_anti argi 100.0 1.3E-46 2.9E-51 399.9 43.8 412 68-553 1-429 (468)
30 TIGR00930 2a30 K-Cl cotranspor 100.0 1.9E-46 4.2E-51 419.1 44.0 427 65-558 73-540 (953)
31 TIGR03813 put_Glu_GABA_T putat 100.0 4.4E-46 9.6E-51 396.8 42.5 441 68-563 1-464 (474)
32 TIGR00910 2A0307_GadC glutamat 100.0 1.4E-44 3.1E-49 385.6 43.2 439 67-560 3-466 (507)
33 PF13520 AA_permease_2: Amino 100.0 3E-43 6.6E-48 371.8 37.1 364 70-451 1-381 (426)
34 COG0531 PotE Amino acid transp 100.0 1.4E-41 3E-46 363.9 44.9 383 62-455 6-399 (466)
35 PRK15238 inner membrane transp 100.0 4.7E-41 1E-45 359.7 43.9 406 66-501 5-460 (496)
36 PF00324 AA_permease: Amino ac 100.0 8.5E-44 1.8E-48 380.2 12.6 364 75-451 2-398 (478)
37 TIGR00837 araaP aromatic amino 100.0 2.8E-28 6.1E-33 253.2 31.0 342 76-441 3-352 (381)
38 KOG1288 Amino acid transporter 99.9 5.5E-26 1.2E-30 230.8 22.8 399 69-475 66-502 (945)
39 KOG2082 K+/Cl- cotransporter K 99.9 1.7E-25 3.7E-30 228.9 25.9 369 69-441 113-590 (1075)
40 TIGR00912 2A0309 spore germina 99.9 1.9E-21 4.2E-26 200.3 34.1 285 69-375 2-293 (359)
41 PHA02764 hypothetical protein; 99.9 1.6E-20 3.4E-25 175.8 22.3 281 61-398 5-285 (399)
42 KOG2083 Na+/K+ symporter [Inor 99.9 5.5E-21 1.2E-25 193.7 17.8 367 67-449 27-419 (643)
43 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.4E-18 5.3E-23 177.0 36.5 361 68-455 1-373 (394)
44 TIGR00796 livcs branched-chain 99.8 3E-17 6.4E-22 166.2 36.3 344 79-460 4-369 (378)
45 PRK10483 tryptophan permease; 99.8 1.3E-17 2.9E-22 169.6 32.4 338 66-428 7-353 (414)
46 PRK09664 tryptophan permease T 99.8 6.5E-17 1.4E-21 164.4 34.9 343 71-437 10-363 (415)
47 TIGR00814 stp serine transport 99.8 2.3E-17 5.1E-22 169.4 28.2 289 75-380 8-313 (397)
48 PRK15132 tyrosine transporter 99.8 8.4E-16 1.8E-20 157.4 36.9 347 71-445 4-362 (403)
49 COG0814 SdaC Amino acid permea 99.8 4.8E-15 1E-19 153.8 35.3 287 66-366 5-303 (415)
50 PRK13629 threonine/serine tran 99.7 6.5E-15 1.4E-19 149.9 34.4 292 76-380 25-348 (443)
51 PF03845 Spore_permease: Spore 99.7 1.3E-13 2.8E-18 139.6 29.7 285 69-376 1-290 (320)
52 KOG1303 Amino acid transporter 99.3 9.5E-10 2.1E-14 113.5 28.7 351 66-443 34-399 (437)
53 PLN03074 auxin influx permease 99.3 3.3E-09 7.2E-14 112.0 33.0 239 67-327 43-294 (473)
54 PTZ00206 amino acid transporte 99.3 2.9E-09 6.2E-14 113.0 31.7 248 71-327 61-319 (467)
55 KOG1304 Amino acid transporter 99.3 4.4E-09 9.6E-14 106.8 31.0 349 67-447 44-416 (449)
56 PF01235 Na_Ala_symp: Sodium:a 99.2 2.3E-08 5E-13 101.9 31.0 295 64-378 13-338 (416)
57 TIGR00835 agcS amino acid carr 99.2 7.3E-08 1.6E-12 98.9 30.9 288 68-377 45-364 (425)
58 PRK11375 allantoin permease; P 99.1 5.9E-07 1.3E-11 95.6 36.6 331 64-417 21-367 (484)
59 COG1115 AlsT Na+/alanine sympo 99.0 1.3E-06 2.8E-11 88.2 32.7 292 65-378 58-382 (452)
60 COG3949 Uncharacterized membra 99.0 2.9E-06 6.2E-11 82.0 30.9 268 76-370 9-281 (349)
61 PF01490 Aa_trans: Transmembra 98.9 1.7E-10 3.6E-15 121.5 -1.9 361 68-448 1-377 (409)
62 COG1457 CodB Purine-cytosine p 98.9 1.5E-05 3.1E-10 82.0 33.9 239 104-372 54-295 (442)
63 PRK11017 codB cytosine permeas 98.9 6.1E-05 1.3E-09 78.6 38.5 184 104-312 44-230 (404)
64 PF13906 AA_permease_C: C-term 98.7 2.3E-08 4.9E-13 69.4 5.6 51 509-559 1-51 (51)
65 COG1953 FUI1 Cytosine/uracil/t 98.7 9.2E-05 2E-09 76.3 33.2 330 64-414 35-378 (497)
66 PRK09442 panF sodium/panthothe 98.7 0.00048 1E-08 74.0 40.0 285 67-372 40-345 (483)
67 TIGR00800 ncs1 NCS1 nucleoside 98.6 0.00014 3E-09 77.2 31.5 242 64-317 8-259 (442)
68 TIGR00813 sss transporter, SSS 98.5 0.00022 4.8E-09 74.9 31.5 287 67-373 2-321 (407)
69 TIGR02119 panF sodium/pantothe 98.5 0.0032 6.9E-08 67.5 40.1 287 67-373 39-345 (471)
70 PRK12488 acetate permease; Pro 98.4 0.0018 3.9E-08 70.5 35.8 227 67-314 66-309 (549)
71 PRK15419 proline:sodium sympor 98.4 0.0032 6.8E-08 67.9 35.4 286 67-373 39-352 (502)
72 TIGR02711 symport_actP cation/ 98.3 0.0063 1.4E-07 66.3 36.6 154 67-240 66-221 (549)
73 TIGR02358 thia_cytX probable h 98.2 0.01 2.2E-07 61.6 36.7 242 104-376 31-274 (386)
74 PF00474 SSF: Sodium:solute sy 98.2 0.00012 2.6E-09 76.8 20.5 293 67-382 5-325 (406)
75 PRK09395 actP acetate permease 98.2 0.019 4.2E-07 62.6 37.2 153 67-239 68-222 (551)
76 PF01566 Nramp: Natural resist 98.1 0.0024 5.2E-08 65.7 27.5 255 101-378 12-285 (358)
77 PF05525 Branch_AA_trans: Bran 98.1 0.0089 1.9E-07 61.8 31.1 214 202-432 120-345 (427)
78 KOG1305 Amino acid transporter 98.1 0.0006 1.3E-08 70.5 22.0 253 67-329 3-259 (411)
79 COG0591 PutP Na+/proline sympo 98.1 0.011 2.5E-07 63.3 32.6 284 67-373 37-352 (493)
80 COG0733 Na+-dependent transpor 98.1 0.005 1.1E-07 63.0 27.6 295 74-376 13-329 (439)
81 TIGR03648 Na_symport_lg probab 98.1 0.02 4.4E-07 62.5 34.1 148 67-236 31-182 (552)
82 PRK00701 manganese transport p 98.1 0.026 5.6E-07 59.4 33.8 76 100-179 63-140 (439)
83 TIGR02121 Na_Pro_sym sodium/pr 98.0 0.033 7.1E-07 59.9 39.6 285 67-373 35-345 (487)
84 COG1914 MntH Mn2+ and Fe2+ tra 98.0 0.025 5.4E-07 58.4 32.0 71 109-179 51-123 (416)
85 PRK10484 putative transporter; 98.0 0.039 8.4E-07 59.9 42.1 295 67-373 37-354 (523)
86 PF02028 BCCT: BCCT family tra 97.8 0.041 8.9E-07 58.3 30.2 348 67-443 72-482 (485)
87 PRK15433 branched-chain amino 97.8 0.073 1.6E-06 55.2 33.6 170 202-375 124-307 (439)
88 PLN00151 potassium transporter 97.7 0.011 2.4E-07 64.7 24.1 221 200-437 274-512 (852)
89 PF02133 Transp_cyt_pur: Perme 97.7 0.0024 5.3E-08 67.8 18.2 171 66-243 5-180 (440)
90 COG1114 BrnQ Branched-chain am 97.3 0.23 4.9E-06 50.5 31.3 217 200-432 120-347 (431)
91 PF02705 K_trans: K+ potassium 97.3 0.19 4.1E-06 53.4 25.9 281 201-497 133-431 (534)
92 PLN00150 potassium ion transpo 97.2 0.22 4.7E-06 54.9 25.9 281 201-497 215-514 (779)
93 COG4147 DhlC Predicted symport 97.1 0.48 1E-05 48.9 30.2 283 108-414 79-410 (529)
94 COG1292 BetT Choline-glycine b 96.9 0.64 1.4E-05 49.0 24.8 99 337-443 393-495 (537)
95 PLN00149 potassium transporter 96.8 0.38 8.3E-06 53.1 23.4 280 202-497 200-501 (779)
96 PRK09950 putative transporter; 96.7 0.75 1.6E-05 49.0 24.5 93 346-443 399-496 (506)
97 PLN00148 potassium transporter 96.7 0.29 6.3E-06 54.0 21.2 281 200-497 197-497 (785)
98 PRK10745 trkD potassium transp 96.6 1.1 2.4E-05 48.3 24.5 224 200-437 143-380 (622)
99 TIGR00794 kup potassium uptake 96.6 0.18 3.9E-06 55.1 18.7 281 200-497 168-468 (688)
100 KOG4303 Vesicular inhibitory a 96.4 0.036 7.9E-07 54.1 11.1 353 66-448 113-485 (524)
101 PRK09928 choline transport pro 96.2 1.8 3.8E-05 47.6 23.5 91 347-441 407-500 (679)
102 COG4146 Predicted symporter [G 95.8 2.3 5.1E-05 42.4 22.0 232 135-377 105-358 (571)
103 COG4145 PanF Na+/panthothenate 95.6 2.8 6.1E-05 42.0 29.1 218 136-373 109-344 (473)
104 TIGR00842 bcct choline/carniti 95.2 5 0.00011 42.3 23.7 91 347-441 354-448 (453)
105 PRK03356 L-carnitine/gamma-but 94.8 6.7 0.00015 41.9 26.2 93 347-443 403-498 (504)
106 KOG2466 Uridine permease/thiam 94.6 2.3 5E-05 44.1 16.8 303 64-389 50-381 (572)
107 COG3158 Kup K+ transporter [In 92.8 15 0.00033 39.1 21.4 230 200-445 148-394 (627)
108 PF00209 SNF: Sodium:neurotran 91.1 26 0.00056 38.1 25.8 103 213-317 193-301 (523)
109 TIGR01197 nramp NRAMP (natural 87.2 40 0.00087 35.0 36.1 42 335-376 282-323 (390)
110 PF05297 Herpes_LMP1: Herpesvi 85.3 0.23 5E-06 47.1 -0.3 19 461-479 86-104 (381)
111 KOG3660 Sodium-neurotransmitte 85.0 68 0.0015 35.5 28.4 58 71-128 39-100 (629)
112 KOG1287 Amino acid transporter 84.8 31 0.00067 36.5 14.7 50 504-555 387-440 (479)
113 KOG2349 Na+:iodide/myo-inosito 84.4 28 0.0006 37.8 14.5 224 134-376 109-362 (585)
114 TIGR00910 2A0307_GadC glutamat 83.0 47 0.001 35.9 16.1 61 504-564 391-467 (507)
115 COG2271 UhpC Sugar phosphate p 79.5 11 0.00025 38.9 9.1 49 358-415 67-115 (448)
116 PTZ00206 amino acid transporte 77.8 1E+02 0.0022 32.9 17.5 56 333-388 121-176 (467)
117 PF02554 CstA: Carbon starvati 76.6 93 0.002 31.7 20.9 102 70-173 52-154 (376)
118 KOG1286 Amino acid transporter 74.7 1.4E+02 0.0029 32.7 21.2 47 201-247 156-202 (554)
119 PF12794 MscS_TM: Mechanosensi 73.3 1.1E+02 0.0024 31.1 21.2 36 284-319 28-67 (340)
120 COG3247 HdeD Uncharacterized c 72.6 77 0.0017 28.9 16.1 132 393-531 14-151 (185)
121 PRK15049 L-asparagine permease 71.6 1.5E+02 0.0033 31.9 29.7 20 480-499 423-442 (499)
122 PF09991 DUF2232: Predicted me 64.3 1.5E+02 0.0032 29.0 19.2 102 350-455 160-266 (290)
123 PF05961 Chordopox_A13L: Chord 63.3 14 0.00029 27.1 3.8 25 539-563 8-32 (68)
124 KOG3659 Sodium-neurotransmitte 58.5 2.8E+02 0.006 30.3 29.1 113 202-315 256-373 (629)
125 PF02990 EMP70: Endomembrane p 57.5 2.8E+02 0.0062 30.1 16.4 34 219-252 198-231 (521)
126 PF06570 DUF1129: Protein of u 56.9 1.7E+02 0.0036 27.3 12.9 13 400-412 86-98 (206)
127 COG3965 Predicted Co/Zn/Cd cat 54.3 2.1E+02 0.0045 27.6 12.8 25 368-392 66-90 (314)
128 PF01102 Glycophorin_A: Glycop 50.2 16 0.00035 30.7 2.9 20 545-565 80-99 (122)
129 PRK15433 branched-chain amino 48.0 3.6E+02 0.0078 28.5 14.4 72 137-226 269-340 (439)
130 PLN00411 nodulin MtN21 family 45.9 3.5E+02 0.0076 27.7 13.3 24 511-534 286-309 (358)
131 TIGR00837 araaP aromatic amino 44.6 3.7E+02 0.0079 27.6 25.4 60 393-455 308-367 (381)
132 COG5505 Predicted integral mem 41.7 72 0.0016 31.4 6.0 81 393-473 27-108 (384)
133 PRK12585 putative monovalent c 39.2 3.1E+02 0.0066 25.1 11.5 20 382-401 29-48 (197)
134 TIGR00911 2A0308 L-type amino 39.1 5.2E+02 0.011 27.8 15.8 47 504-552 418-467 (501)
135 PHA03049 IMV membrane protein; 39.1 47 0.001 24.3 3.3 24 539-562 8-31 (68)
136 PF03806 ABG_transport: AbgT p 37.9 5.4E+02 0.012 27.6 14.6 69 285-354 315-387 (502)
137 PF05525 Branch_AA_trans: Bran 37.8 5.1E+02 0.011 27.3 14.3 73 137-226 265-337 (427)
138 PLN02351 cytochromes b561 fami 36.8 3.9E+02 0.0084 25.6 10.4 24 507-530 149-172 (242)
139 COG4858 Uncharacterized membra 33.2 3.8E+02 0.0082 24.4 11.9 21 393-413 89-114 (226)
140 PF02667 SCFA_trans: Short cha 32.9 6.2E+02 0.013 26.8 12.9 30 385-414 82-111 (453)
141 PF03222 Trp_Tyr_perm: Tryptop 31.6 6.1E+02 0.013 26.3 15.6 34 484-517 346-379 (394)
142 PF05297 Herpes_LMP1: Herpesvi 31.5 16 0.00034 35.1 0.0 23 480-502 53-75 (381)
143 PF10856 DUF2678: Protein of u 30.3 1E+02 0.0022 25.6 4.3 34 438-471 76-109 (118)
144 PF11998 DUF3493: Protein of u 29.4 2.1E+02 0.0046 21.8 5.7 38 284-321 6-43 (75)
145 PF05656 DUF805: Protein of un 28.8 3.3E+02 0.0072 22.4 11.5 18 432-449 58-75 (120)
146 cd08764 Cyt_b561_CG1275_like N 28.6 5E+02 0.011 24.4 10.2 30 499-530 120-149 (214)
147 PF11174 DUF2970: Protein of u 28.6 1.7E+02 0.0037 20.9 4.8 47 269-318 3-49 (56)
148 PRK00968 tetrahydromethanopter 26.6 77 0.0017 29.3 3.4 32 288-319 204-236 (240)
149 cd08762 Cyt_b561_CYBASC3 Verte 26.4 4.2E+02 0.0091 24.1 8.1 22 506-527 136-157 (179)
150 PF03073 TspO_MBR: TspO/MBR fa 26.2 4.1E+02 0.0089 23.1 8.1 14 384-397 23-36 (148)
151 PF05545 FixQ: Cbb3-type cytoc 25.8 1.4E+02 0.003 20.5 3.9 14 544-558 21-34 (49)
152 PF15102 TMEM154: TMEM154 prot 25.6 55 0.0012 28.4 2.3 9 553-561 81-89 (146)
153 COG0109 CyoE Polyprenyltransfe 25.3 6.9E+02 0.015 24.9 10.7 40 396-435 97-138 (304)
154 PF12273 RCR: Chitin synthesis 25.2 44 0.00096 28.5 1.7 9 554-562 22-30 (130)
155 PF14256 YwiC: YwiC-like prote 25.1 4.3E+02 0.0094 22.5 11.0 46 402-447 8-53 (129)
156 PF01578 Cytochrom_C_asm: Cyto 25.1 4.6E+02 0.01 24.3 8.8 17 509-525 67-83 (214)
157 COG4736 CcoQ Cbb3-type cytochr 24.4 1.4E+02 0.0031 21.6 3.8 16 546-562 23-38 (60)
158 PF12606 RELT: Tumour necrosis 23.3 1.2E+02 0.0025 21.2 3.0 7 545-551 15-21 (50)
159 COG1966 CstA Carbon starvation 22.8 1E+03 0.022 26.0 30.9 96 73-170 55-151 (575)
160 PHA02898 virion envelope prote 22.1 3.9E+02 0.0085 20.9 7.1 21 540-560 54-74 (92)
161 cd08766 Cyt_b561_ACYB-1_like P 22.0 5.3E+02 0.012 22.5 8.1 71 455-527 45-127 (144)
162 KOG1619 Cytochrome b [Energy p 21.3 1.9E+02 0.0042 27.4 5.0 31 498-530 148-178 (245)
163 COG4325 Predicted membrane pro 20.4 9.1E+02 0.02 24.9 9.7 40 373-414 103-142 (464)
164 TIGR00906 2A0303 cationic amin 20.4 1.1E+03 0.025 25.7 30.3 53 444-499 494-549 (557)
165 PF06679 DUF1180: Protein of u 20.3 1.2E+02 0.0026 27.1 3.4 15 539-553 100-114 (163)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=5.8e-64 Score=538.62 Aligned_cols=495 Identities=36% Similarity=0.654 Sum_probs=413.5
Q ss_pred CcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 63 GADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 63 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
+++++|+++.+++++++++.++|+|+|..++......+||+.+++|+++++.+++.+++|+|+++++|++||.|.|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 45689999999999999999999999999998875568999999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccc-----cccccccCCcchHHHHHHHHHHHHHHHh
Q 007861 143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVE-----VDGLFKGYNMLDFPAVALVLLLTLCLCH 217 (587)
Q Consensus 143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (587)
+|+.+||++||.++++|+...+..+..++.|+..+++. ....+... .++.. ....+++++++++++.+|.+
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~-~~~~~~~~~~~~~~~~l~---~~~~~~a~~ii~l~~~ln~~ 178 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNK-QIGQFRRTYFKLNYDGLA---EYPDFFAVCLILLLAVLLSF 178 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hccccccccccccCCccc---ccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999887752 11111110 01111 12346777788888899999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCcc-----CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 218 GTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLV-----KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
|+|..+|++.+++.++++.++++++.++.+.+.+|+. +.+++.|.++.+++.+...++|+|.|+|.+++++||+|
T Consensus 179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~k 258 (557)
T TIGR00906 179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVK 258 (557)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhcc
Confidence 9999999999999999999888888888776665654 22356677888899999999999999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQAR 372 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 372 (587)
||+||+||+++.++++++++|++..++.....|+++++.++|+..+++..+.++...++.+.++.+.+++.++.+++.+|
T Consensus 259 nP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sR 338 (557)
T TIGR00906 259 NPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPR 338 (557)
T ss_pred CccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888888999999888888999999999999999999999999999
Q ss_pred HHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC-CC
Q 007861 373 YLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISN-NP 451 (587)
Q Consensus 373 ~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~ 451 (587)
++|+|||||.+|++|+|+|+|+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++.+++|++++.. ++
T Consensus 339 il~amarDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~ 418 (557)
T TIGR00906 339 VIYAMARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQ 418 (557)
T ss_pred HHHHHHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccc
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999775211 11
Q ss_pred C-----------------------chh---HHHHHHHHHHHHHHHHhh-hhcccc--chhhHHHHHHHHHHHHHHhhccC
Q 007861 452 P-----------------------SHT---LLFLFLLSFCAICFSLSL-KIQQQL--WGLPLFGGLMLIVTAFFHYSMSR 502 (587)
Q Consensus 452 ~-----------------------~~~---~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~ 502 (587)
| .+. ......++.+...+...+ .....+ +.+..+.+++.+....+..++|+
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (557)
T TIGR00906 419 AKDTDEKDTLDSWVPFTSKSESQSEGFSLRTLFSGLILGLSILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQ 498 (557)
T ss_pred cccccccccccccccccccccccccchhHHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 000 111111111111122222 111223 33444444444455555566688
Q ss_pred CCCCCccccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhccccchh
Q 007861 503 VSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYE 561 (587)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (587)
...+++||+|..|++|.++++.|++++..+...+|+.+.+|+++|++.|+.|++||+++
T Consensus 499 ~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 499 NKQKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 76788999999999999999999999999999999999999999999999999999663
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=6.8e-55 Score=464.50 Aligned_cols=367 Identities=17% Similarity=0.291 Sum_probs=312.0
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF 143 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 143 (587)
++++|+++.+|+.++++|.++|+|+|..++..... +||..+++|++++++.++.+.+++|+++++|++||.|+|+++.+
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~~ 102 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREFL 102 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHh
Confidence 45899999999999999999999999999999865 89988899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
||.+||++||.+|++|+...+......+.++.........+. ...+++++++++.+|++|+|..+
T Consensus 103 G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~~~~~---------------~~~~~~~~~l~~~iN~~gvk~~~ 167 (499)
T PRK15049 103 GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGGVPQ---------------WVFALAALTIVGTMNMIGVKWFA 167 (499)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcH---------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987766666555666543211000111 14567777889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc---cc--------ccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCN---GS--------VQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~---~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
+++.+++.+|++.++.+++.++.. .+ +.++.+++++.|+++.+++.++..++|+|.|+|.+++++||+|
T Consensus 168 ~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~k 247 (499)
T PRK15049 168 EMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECK 247 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 999999999988777666554321 11 1111222345567777778888889999999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQA 371 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 371 (587)
||+|++|||+..+...+.++|++..++.....|++++.. ++|+.++++..+.+++..++.+.++++.+++.++.+++.+
T Consensus 248 nP~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~s 327 (499)
T PRK15049 248 DPQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTG 327 (499)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888754 5799999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007861 372 RYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRRYV 445 (587)
Q Consensus 372 R~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 445 (587)
|++|++||||.+|++|+|+| |+++|++|++++.+++++..++ ..++.+.++.+.+.+++|.+++++.+++|++
T Consensus 328 R~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~ 406 (499)
T PRK15049 328 RILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKA 406 (499)
T ss_pred HHHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999 8899999999988876543222 3488999999999999999999999988876
Q ss_pred cc
Q 007861 446 MI 447 (587)
Q Consensus 446 ~~ 447 (587)
.+
T Consensus 407 ~~ 408 (499)
T PRK15049 407 IK 408 (499)
T ss_pred hh
Confidence 43
No 3
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=4.8e-53 Score=449.63 Aligned_cols=424 Identities=18% Similarity=0.256 Sum_probs=344.2
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
++++|+++.+++.+++++.++|+|+|..++..... +|| +.+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 10 ~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~~ 88 (471)
T PRK11387 10 GQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAARY 88 (471)
T ss_pred hhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHh
Confidence 45899999999999999999999999999999866 887 5899999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
+|+.+||.+||.+|+++....+......+.+++.+++. .+. ....+++.++++.+|++|+|..
T Consensus 89 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~---------------~~~~~~~~~~~~~in~~gvk~~ 151 (471)
T PRK11387 89 LGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ--VPV---------------WPWCLLFCALIFGLNVVSTRFF 151 (471)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CcH---------------HHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999988877776666665544330 011 1344455667889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc-------c------ccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhH
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFCNG-------S------VQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAE 289 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~~~-------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~ 289 (587)
++++.+++.+|++.++.+++.++... + .+++. ..++.|++..+++.++..++|+|.|+|.+++++|
T Consensus 152 ~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~ 230 (471)
T PRK11387 152 AEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLT-AEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAG 230 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccC-CCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 99999999999888776666543210 0 01111 1234455666788888899999999999999999
Q ss_pred hhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc-ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 290 EIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL-KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAML 368 (587)
Q Consensus 290 E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 368 (587)
|+|||+|++||++..+..++.++|++..+++....|.++.. .++|+.++++..+++++..++.+.++++.+++.+++++
T Consensus 231 E~knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~ 310 (471)
T PRK11387 231 ETENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLY 310 (471)
T ss_pred HhcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888887765 45799999999999999999999999999999999999
Q ss_pred hhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 369 GQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYR 442 (587)
Q Consensus 369 ~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 442 (587)
+.||++|++||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|.+.+++.+++
T Consensus 311 ~~sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~l 389 (471)
T PRK11387 311 ASGRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMF 389 (471)
T ss_pred HhhHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 6799999999886655443332 2356778888899999999999999988
Q ss_pred hhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHH
Q 007861 443 RYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISI 522 (587)
Q Consensus 443 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 522 (587)
|+++++.+++ ..+++||+|.+|+.+++++
T Consensus 390 r~~~~~~~~~---------------------------------------------------~~~~~~~~~~~~~~~~l~~ 418 (471)
T PRK11387 390 RRRHLRDGKA---------------------------------------------------LSELAYRAPWYPLTPILGF 418 (471)
T ss_pred HHHHHhcCCC---------------------------------------------------CCCCCccCCCccHHHHHHH
Confidence 8876543221 1235688888999999999
Q ss_pred HHHHHHHhcCChHH-----HHHHHHHHHHHHHHhhhhcccc
Q 007861 523 FLNVFLMTTLKLLS-----YQRFAMWTCLITLFYVLYGVHS 558 (587)
Q Consensus 523 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 558 (587)
+.+++++..+.... ......++++++..|.+++|++
T Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (471)
T PRK11387 419 VLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRLK 459 (471)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 98887766432221 2334555667777777766554
No 4
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.1e-52 Score=444.68 Aligned_cols=367 Identities=22% Similarity=0.351 Sum_probs=317.3
Q ss_pred cCCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 61 RSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 61 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
+++++++|+++.+|+.++++|.++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 14 ~~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~ 92 (458)
T PRK10249 14 NQEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAY 92 (458)
T ss_pred CCchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence 35567999999999999999999999999999999865 89999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhh
Q 007861 141 VTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTK 220 (587)
Q Consensus 141 ~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k 220 (587)
+.+|+.+||++||.+|+++....++.....+.+++.+++.. + ......+++++.+.+|++|+|
T Consensus 93 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~---------------~~~~~~~~~~l~~~lN~~gv~ 155 (458)
T PRK10249 93 KYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV--P---------------TWIWAAAFFIIINAVNLVNVR 155 (458)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC--c---------------HHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999999888888877788887655411 0 114567777888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc---cc------ccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhh
Q 007861 221 ESSILNLIMTIFHVVFFGFIIIAGFCN---GS------VQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEI 291 (587)
Q Consensus 221 ~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 291 (587)
..+|++.+++.+|++.++.+++.++.. .+ .++..+.+++.|.++.+++.++...+|+|.|+|.+++++||+
T Consensus 156 ~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 235 (458)
T PRK10249 156 LYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEA 235 (458)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 999999999999987766655544321 11 112222233446778889999999999999999999999999
Q ss_pred cCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 292 QNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQ 370 (587)
Q Consensus 292 k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 370 (587)
|||+|++||++..+.....++|++..++.....|+++... ++|+.++++..+++++..++.+.++++.+++.++.+++.
T Consensus 236 ~~P~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 315 (458)
T PRK10249 236 RDPEKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSN 315 (458)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888888888877654 479999998888889999999999999999999999999
Q ss_pred HHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 371 ARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRRY 444 (587)
Q Consensus 371 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 444 (587)
+|++|++||||.+|++|+|+| |+|+|++|++++.+++.+..++ ..++.+.++.+...++.|.++++++++.|+
T Consensus 316 sR~l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 316 SRMLFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred HHHHHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7799999999999988766544 258889999999999999999999998886
Q ss_pred hc
Q 007861 445 VM 446 (587)
Q Consensus 445 ~~ 446 (587)
++
T Consensus 395 ~~ 396 (458)
T PRK10249 395 AM 396 (458)
T ss_pred HH
Confidence 43
No 5
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=429.42 Aligned_cols=401 Identities=23% Similarity=0.310 Sum_probs=356.5
Q ss_pred ccccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861 65 DMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF 143 (587)
Q Consensus 65 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 143 (587)
++||+|..+|+.++++|+.||+|+|+..|..+.. +||+ .+++|++.+++.+++..+++||++.+|.+|+..+|+.|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999966 9996 9999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
+|-+||..||.||+.|.+..+.+..+.+..++.+++.. -+ ......++.+++.++|.+++|..+
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-v~---------------~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-VP---------------PWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-CC---------------hHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999998887512 11 225667888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc--cc-------ccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCc
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCN--GS-------VQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNP 294 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p 294 (587)
..+.+++.+|++.++.+++.++.. +. ..++...++..+.|+.+++..+..+.|+|.|.|.+...++|.|||
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP 263 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENP 263 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCc
Confidence 999999999999998888776542 11 112222234456789999999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc---------ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 007861 295 SKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL---------KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLV 365 (587)
Q Consensus 295 ~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 365 (587)
+|++|||+--......++|++..+++...+|+++.+ ..+|+..+++..|.+.+..++++.++.+++++.|+
T Consensus 264 ~K~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS 343 (541)
T COG0833 264 RKSIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANS 343 (541)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999998732 24699999999999999999999999999999999
Q ss_pred HHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 366 AMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANAL 439 (587)
Q Consensus 366 ~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~ 439 (587)
.++++||++|+||+||..||+|+|+| |+|+|.+|++++.+++++..+- ..|+++.++.+++..+.|..+++++
T Consensus 344 ~lYasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~sh 422 (541)
T COG0833 344 GLYASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSH 422 (541)
T ss_pred cchHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8899999999998888766554 2699999999999999999999999
Q ss_pred HHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHH
Q 007861 440 IYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAA 519 (587)
Q Consensus 440 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 519 (587)
++.|+..+.+.++. +..+||.|.+||.|+
T Consensus 423 irFR~A~~~QG~s~---------------------------------------------------~~L~yks~~~p~g~~ 451 (541)
T COG0833 423 IRFRRAMKAQGRSL---------------------------------------------------DELPYKSPFGPYGPI 451 (541)
T ss_pred HHHHHHHHHcCCCh---------------------------------------------------hhcCccCCCccHHHH
Confidence 99998766544322 355799999999999
Q ss_pred HHHHHHHHHHhcCCh
Q 007861 520 ISIFLNVFLMTTLKL 534 (587)
Q Consensus 520 ~~~~~~~~~~~~~~~ 534 (587)
+++++|+++++.+++
T Consensus 452 ~~~~~~~li~i~q~y 466 (541)
T COG0833 452 YGLILCILILIGQGY 466 (541)
T ss_pred HHHHHHHHHHHHcch
Confidence 999999999887533
No 6
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=1.5e-52 Score=443.02 Aligned_cols=424 Identities=19% Similarity=0.330 Sum_probs=353.3
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRV 141 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 141 (587)
.+++++|+++.+|..++++|.++|+|+|..++..... +||+.+++|++++++.++.+++++|+++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3456899999999999999999999999999999865 899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 142 TFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 142 ~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
.+||.+||.+||.+|+.++...+.+....+.+++.+++.. +.| ....+++++.+.+|++|+|.
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~--~~~---------------~~~~~~~~~~~~lN~~gv~~ 145 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM--AQW---------------IPALIAVALVALANLAAVRL 145 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC--chH---------------HHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999988888888888887665411 111 45566677788899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccc-----c------cccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHh
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFCN-----G------SVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEE 290 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~~-----~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 290 (587)
.++++.+++.+|++.++++++.++.. . +++++.+.+++.++++.++..++..++|+|.|+|.+++.+||
T Consensus 146 ~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E 225 (461)
T PRK10746 146 YGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGE 225 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 99999999999988776655544311 1 123333333455678888999999999999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLG 369 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 369 (587)
+|||+|++|||+..+.....++|++..+++....|++++.. ++|+..+++..+.+....++++.++.+.+++.++.+++
T Consensus 226 ~knP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~ 305 (461)
T PRK10746 226 AKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYS 305 (461)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998774 46999999888988888899999999999999999999
Q ss_pred hHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHH---hh-----hcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 370 QARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIA---LF-----TELNIVLEMISISTLLVFYLVANALIY 441 (587)
Q Consensus 370 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~ 441 (587)
.||++|++||||.+|++|+|+| |+|+|++|++++.+...+.. .. ..++.+.++.+.+.++.|.++++++++
T Consensus 306 ~sR~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~ 384 (461)
T PRK10746 306 CGRMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLR 384 (461)
T ss_pred HHHHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 88999999998754433211 11 247889999999999999999999999
Q ss_pred HhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHH
Q 007861 442 RRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAIS 521 (587)
Q Consensus 442 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 521 (587)
+|+++++ ..++.+||.|++|+.++++
T Consensus 385 ~r~~~~~------------------------------------------------------~~~~~~~~~~~~p~~~~~~ 410 (461)
T PRK10746 385 FRRAHKA------------------------------------------------------AIASHPFRSILFPWANYLT 410 (461)
T ss_pred HHHhccc------------------------------------------------------cccCCCCcCCCccHHHHHH
Confidence 9988743 1234567888899999988
Q ss_pred HHHHHHHHhcCC-----hHHHHHHHHHHHHHHHHhhhhcccc
Q 007861 522 IFLNVFLMTTLK-----LLSYQRFAMWTCLITLFYVLYGVHS 558 (587)
Q Consensus 522 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (587)
++++++++..+. ..+......++.++.+.|.++++.+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~ 452 (461)
T PRK10746 411 MAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNR 452 (461)
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 888888755431 1344445556666777777776655
No 7
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.1e-53 Score=417.78 Aligned_cols=426 Identities=22% Similarity=0.371 Sum_probs=377.7
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRV 141 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 141 (587)
++++++|.++.+|.-++++|..||+|+|...+..... +||+.++++++++++.+.+...++|+..+-|.+|+.-+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4556999999999999999999999999999999976 999999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 142 TFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 142 ~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
.+|++.||++||.||+.++....+...+.+.|++.+++.. +.| +.+++..++...+|+.++|.
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P~W---------------v~al~~~~l~~~~NL~sVk~ 148 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--PQW---------------VFALAAVVLLLAVNLISVKV 148 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999733 344 67788888999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc-----------cccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHh
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFC-----------NGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEE 290 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 290 (587)
.+..+.+++.+|++.++.+++.++. ..+.+|..+++++.|+|+.+++.++...+|+|.|.|.+...++|
T Consensus 149 FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~E 228 (462)
T COG1113 149 FGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAE 228 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 9999999999999999888877643 12356777788999999999999999999999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLG 369 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 369 (587)
+|||+|++|||+........++|+...+++....|++++.+ ++|+.+.++..|.++...++++.++.+.++++|+.+++
T Consensus 229 t~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglys 308 (462)
T COG1113 229 AKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYS 308 (462)
T ss_pred hcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccc
Confidence 99999999999999999999999999999999999998775 57999999999999999999999999999999999999
Q ss_pred hHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 370 QARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 370 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 443 (587)
.+|++|.+|+||..||.++|+| |+|+|++|++++.+...+..++ ..|+.+.+..+...+..|+++.++.+++|
T Consensus 309 tsRmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~r 387 (462)
T COG1113 309 TSRMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLR 387 (462)
T ss_pred cchHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 8899999999988776555544 45899999999999999999999999999
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHH
Q 007861 444 YVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIF 523 (587)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 523 (587)
+++ |+..+..++|+|.+|+..++.++
T Consensus 388 k~~------------------------------------------------------~~~~~~~~fkm~~~p~~~~l~l~ 413 (462)
T COG1113 388 KAK------------------------------------------------------PAEGKKLKFKMPLYPFTNYLTLA 413 (462)
T ss_pred hcc------------------------------------------------------hhcccCcccccccccHHHHHHHH
Confidence 854 33345567888888888888888
Q ss_pred HHHHHHhcC-----ChHHHHHHHHHHHHHHHHhhhhccccch
Q 007861 524 LNVFLMTTL-----KLLSYQRFAMWTCLITLFYVLYGVHSTY 560 (587)
Q Consensus 524 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (587)
+.++.++.+ ...+.....+|+++-.+.|...+||+++
T Consensus 414 fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~~~ 455 (462)
T COG1113 414 FLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKAR 455 (462)
T ss_pred HHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 877765532 2244455566666666666566555433
No 8
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=1.1e-51 Score=437.83 Aligned_cols=373 Identities=20% Similarity=0.293 Sum_probs=319.8
Q ss_pred CcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 63 GADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 63 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
+.+++|+++.+|+.+++++.++|+|+|..++..... +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345889999999999999999999999999998865 8888889999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
+||.+||++||.+|++++...++.....+.++..+++. .+ ....+++++++...+|.+|+|..
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~---------------~~~~~~~~~~~~~~~n~~gv~~~ 148 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD--IP---------------LWLFSLILTIVLTLTNLYSVKSY 148 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--Cc---------------HHHHHHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999988888888876541 11 12567777778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc---c----c---ccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFCN---G----S---VQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~~---~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
++++.+++.+|++.++.+++.++.. . + ..++.+.+++.|+++.+++.++..++|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k 228 (452)
T TIGR01773 149 GEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESS 228 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhc
Confidence 9999999999998876666554321 1 1 1222222345567777899999999999999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc--ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL--KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQ 370 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 370 (587)
||+|++||++..+.....++|++..+......|.++.. +.+|+..+.+..++++...++.+.++++++++.++.+++.
T Consensus 229 ~P~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~ 308 (452)
T TIGR01773 229 NPIKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTT 308 (452)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888777777766543 2348888888888888999999999999999999999999
Q ss_pred HHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 371 ARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRRY 444 (587)
Q Consensus 371 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 444 (587)
+|++|++||||.+|++|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|.+++++.+++|+
T Consensus 309 sR~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 309 SRMLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRK 387 (452)
T ss_pred HHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 7899999999998888766554 236778888888889999999999999998
Q ss_pred hccCCCCCch
Q 007861 445 VMISNNPPSH 454 (587)
Q Consensus 445 ~~~~~~~~~~ 454 (587)
++++++||++
T Consensus 388 ~~~~~~~~~~ 397 (452)
T TIGR01773 388 KLKANGEAIK 397 (452)
T ss_pred HHHhcCCCCC
Confidence 8777666654
No 9
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=1.8e-51 Score=435.22 Aligned_cols=423 Identities=20% Similarity=0.306 Sum_probs=347.0
Q ss_pred CcccccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHH
Q 007861 63 GADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRV 141 (587)
Q Consensus 63 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 141 (587)
+++++|+++.++.++++++.++| |.+...+..... +|+. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56689999999999999999997 777776666544 7885 78999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 142 TFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 142 ~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
.+||..||++||.+++.+....+.++..+++|++..++.. +. ...+++++++.+.+|++|+|.
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--~~---------------~~~~~~~~~~~~~ln~~g~~~ 142 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--PG---------------WLAALVFYIVFIGINILGVGE 142 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--ch---------------hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998877511 11 155667777888999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccCcc-----CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCC
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLV-----KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSK 296 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r 296 (587)
.+|++.++.+++++.++++.+....+.+..++. +.+++.+.++.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 143 ~~~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r 222 (442)
T TIGR00908 143 AAKLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKR 222 (442)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999999999988877655554443333322221 123345566777889999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc-ccchHHHHHHHh-Ch-hHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007861 297 SLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL-KDASFSMAFRNI-GW-AWASNVVGAGASLGIVASLLVAMLGQARY 373 (587)
Q Consensus 297 ~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 373 (587)
|+||+++.+..+..++|+...++.....+.+++. .++|+.++++.. |+ .+...++.+..+++.+++.++.+.+.+|+
T Consensus 223 ~iprai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~ 302 (442)
T TIGR00908 223 DIPRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQ 302 (442)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998877766666666664 356888888755 32 45667777778888899999999999999
Q ss_pred HHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 007861 374 LCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPS 453 (587)
Q Consensus 374 l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 453 (587)
+|++||||.+|++|+|+| |+|+|++|++++.+++.++.+..+.+.+.++.+...++.|.+.+++++++|+++++.+|
T Consensus 303 l~a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p~~~r-- 379 (442)
T TIGR00908 303 IFALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRPDMER-- 379 (442)
T ss_pred HHHHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC--
Confidence 999999999999999999 99999999999999998888777778888889999999999999999999988765444
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC-
Q 007861 454 HTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTL- 532 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 532 (587)
+||.|..|+.+++++++++++++.+
T Consensus 380 ------------------------------------------------------p~~~p~~~~~~~l~~~~~~~~l~~~~ 405 (442)
T TIGR00908 380 ------------------------------------------------------PYRTPGGILTPGVALVLACVALVTGF 405 (442)
T ss_pred ------------------------------------------------------CccCCCcchHHHHHHHHHHHHHHHHH
Confidence 3556677888888888887776653
Q ss_pred --ChHHHHHHHHHHHHHHHHhhhhccccchh
Q 007861 533 --KLLSYQRFAMWTCLITLFYVLYGVHSTYE 561 (587)
Q Consensus 533 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 561 (587)
..+.+.....+.+++.++|++|+|+|+.+
T Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 436 (442)
T TIGR00908 406 YVDPRVVVGAVAIFVVLIGYYFLYSRHHLVS 436 (442)
T ss_pred HcChHHHHHHHHHHHHHHHHHHhhhhchhhc
Confidence 33444445666677777787887776444
No 10
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.8e-51 Score=434.98 Aligned_cols=368 Identities=24% Similarity=0.391 Sum_probs=318.8
Q ss_pred CcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 63 GADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 63 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
+++++|+++.+|..+++++.++|+|+|..++..... +||+.+++|++++++.++.+++++|+++++|.+||.|+|+++.
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 345899999999999999999999999999999866 8899999999999999999999999999999999999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
+||..||++||.++++++...++.....+++++..++. .+.| ....++.++...+|++|+|..
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~---------------~~~~i~~~~~~~lN~~gv~~~ 148 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--IPTW---------------VSAAVFFVVINAINLTNVKVF 148 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CcHH---------------HHHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999999999998888888766541 1112 455666678899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---cc------cccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcC
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFC---NG------SVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQN 293 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~---~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 293 (587)
++++.+++.+|+..++++++.++. .. ...++.+.+++.|+++.++..++..+.|+|.|+|.+++++||+||
T Consensus 149 ~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~kn 228 (456)
T PRK10238 149 GEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADN 228 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcC
Confidence 999999999998877655543321 11 112222234455677777888888899999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007861 294 PSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQAR 372 (587)
Q Consensus 294 p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 372 (587)
|+|++||++..+.....+.|+..........|.+++.. ++|+.++++..+.++...++.+.++.+.+++.++++++.||
T Consensus 229 P~r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR 308 (456)
T PRK10238 229 PEQSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSR 308 (456)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887777788887754 57999999888888889999999999999999999999999
Q ss_pred HHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007861 373 YLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRRYVM 446 (587)
Q Consensus 373 ~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 446 (587)
++|++||||.+|++|+|+| |+|+|++|++++.+++.+..++ ..++.+.++.+.+.+++|.+++++.++.|+++
T Consensus 309 ~l~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~ 387 (456)
T PRK10238 309 MLFGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAK 387 (456)
T ss_pred HHHHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 6799999999999988766554 45889999999999999999999999999877
Q ss_pred cCC
Q 007861 447 ISN 449 (587)
Q Consensus 447 ~~~ 449 (587)
+++
T Consensus 388 ~~~ 390 (456)
T PRK10238 388 QEQ 390 (456)
T ss_pred Hhc
Confidence 654
No 11
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=9.6e-52 Score=437.45 Aligned_cols=426 Identities=21% Similarity=0.341 Sum_probs=346.0
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
++++++|+++.++.++++++.++|+|+|..++.+....+|+. .+++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 2 ~~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~ 81 (445)
T PRK11357 2 GSQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLK 81 (445)
T ss_pred CcccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHH
Confidence 356699999999999999999999999999998775545554 8899999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhh
Q 007861 141 VTFGEFVGYFAGAN-ILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGT 219 (587)
Q Consensus 141 ~~~g~~~g~~~g~~-~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 219 (587)
+.+||.+||++||. ++.......+.++..+++|+...++. . .+ ....+++++..++..+|.+|+
T Consensus 82 ~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~-~--~~------------~~~~~~~~~~~~~~~ln~~gv 146 (445)
T PRK11357 82 NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI-D--PL------------LGKFIAAGLIIAFMLLHLRSV 146 (445)
T ss_pred HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-c--hH------------HHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999997 44455666777888888887755441 0 00 022566666777889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCC--CCcc-hhHHHHHHHHHHHhccchhhhhchhHhhcCcCC
Q 007861 220 KESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGL--APFG-VKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSK 296 (587)
Q Consensus 220 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r 296 (587)
|..+|++.+++.++++.++++++.++...+.+++.+..+. ...+ +.+++.++..++|+|.|+|.+++++||+|||+|
T Consensus 147 ~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r 226 (445)
T PRK11357 147 EGGAAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGK 226 (445)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccc
Confidence 9999999999999998877776665543333333221111 1112 556888889999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007861 297 SLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNI--GWAWASNVVGAGASLGIVASLLVAMLGQARY 373 (587)
Q Consensus 297 ~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 373 (587)
|+||++..+..+++++|++.+++.....|.+++.. ++|+.++++.. .+++...++.+.++++.+++.++++.+.+|+
T Consensus 227 ~iP~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~ 306 (445)
T PRK11357 227 TMPRALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRL 306 (445)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 99999999999999999999999888888887654 46787777653 3456667777788888999999999999999
Q ss_pred HHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCc
Q 007861 374 LCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPS 453 (587)
Q Consensus 374 l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 453 (587)
+|++||||.+|++|+|+|||+|+|++|++++++++.++.+..+++.+.++.+....+.|.+...+.+++|++++ .
T Consensus 307 ~~a~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~~-~---- 381 (445)
T PRK11357 307 EYAMAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRDD-Y---- 381 (445)
T ss_pred HHHHHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCCC-C----
Confidence 99999999999999999999999999999999999988888889999998888888999998888887775532 1
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhc--
Q 007861 454 HTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTT-- 531 (587)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 531 (587)
+++||.|..|+.|+++++.+++++..
T Consensus 382 ----------------------------------------------------~~~~k~p~~~~~~~~~~~~~~~~~~~~~ 409 (445)
T PRK11357 382 ----------------------------------------------------KPLWRTPAFGLMTTLAIASSLILVASTF 409 (445)
T ss_pred ----------------------------------------------------CCCcccCCchHHHHHHHHHHHHHHHHHH
Confidence 13477788888899998888887643
Q ss_pred --CChHHHHHHHHHHHHHHHHhhhhccccc
Q 007861 532 --LKLLSYQRFAMWTCLITLFYVLYGVHST 559 (587)
Q Consensus 532 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (587)
....++.....++++|+.+|+.++||++
T Consensus 410 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 410 VWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 2334455667788889888877776653
No 12
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.5e-52 Score=421.66 Aligned_cols=466 Identities=16% Similarity=0.211 Sum_probs=383.2
Q ss_pred cCCCChhhhhhhhhcCCcccccccChhHHHHHhhcccc-cccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHH
Q 007861 47 ATWTPDQELNRVRLRSGADMKRKLMWYDLVALGVGGML-GVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTE 124 (587)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ae 124 (587)
++++|+++..+++ ++++++|+++.|+.++++++.+- -.|+-......... +|+ ...|+|++++++.++.+++++|
T Consensus 29 ~~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~~i~va~slaE 105 (550)
T KOG1289|consen 29 EDDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFFSICVALSLAE 105 (550)
T ss_pred cccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecccc-CChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3445556666666 99999999999999999998761 13333333333322 555 5999999999999999999999
Q ss_pred HhhccccCCchhhhHHHH----hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcc
Q 007861 125 FSVQIPVAGGAFSYLRVT----FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNML 200 (587)
Q Consensus 125 l~s~~P~~GG~y~~~~~~----~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (587)
+++++|++||.|.|+... +||..+|++||...+++.+..++.....++.+....... ++++.. + ....
T Consensus 106 l~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~-np~y~~------~-~~~~ 177 (550)
T KOG1289|consen 106 LCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT-NPNYEP------T-NYHQ 177 (550)
T ss_pred HHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc-CCCCcc------c-ceEe
Confidence 999999999999999874 677889999999999999999999999999998887633 333321 1 1235
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-----------ccCccCCCCCCCcchhHHHH
Q 007861 201 DFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGS-----------VQNLVKPGGLAPFGVKGIVD 269 (587)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 269 (587)
..+..++.++..++|....|...|++.+.....+..+++.++......+ +.++.|.+++.+.||. +..
T Consensus 178 ~~v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~a-fil 256 (550)
T KOG1289|consen 178 FGVFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWA-FIL 256 (550)
T ss_pred ehHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHH-HHH
Confidence 5788888999999999999999999999999999988877777655322 1233445667667776 888
Q ss_pred HHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc---cc--cchHHHHHHHhCh
Q 007861 270 GAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKI---LK--DASFSMAFRNIGW 344 (587)
Q Consensus 270 ~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~ 344 (587)
++....|.+.|+|+.+|++||+|||+|+.||+|+.+..+..++.....+.+.+..++|.- ++ ++|+.+.+.+.-+
T Consensus 257 ~f~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg 336 (550)
T KOG1289|consen 257 GFFNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALG 336 (550)
T ss_pred hhccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999998885331 22 4799998865544
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhh-----hcH
Q 007861 345 AWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALF-----TEL 417 (587)
Q Consensus 345 ~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~ 417 (587)
+-....+..+.+++.+.+..+.+.+.||..|+.||||.+| ++++|+||++++|.+|+++..+++.++.++ .++
T Consensus 337 ~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af 416 (550)
T KOG1289|consen 337 KKGAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAF 416 (550)
T ss_pred CCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 5445778888888999999999999999999999999999 899999999999999999999999888876 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhcccc-chhhHHHHHHHHHHHHH
Q 007861 418 NIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQL-WGLPLFGGLMLIVTAFF 496 (587)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 496 (587)
+++.+.+.++...+|..+.++.+..+|+ +.++.||.. |++ .++.+++++|.++..++
T Consensus 417 ~Alfs~a~i~l~~Ay~iP~~~rlf~~r~-~f~~gp~~l---------------------Gk~s~p~~~i~v~w~lf~~vi 474 (550)
T KOG1289|consen 417 NALFSAAAIALFIAYAIPIFCRLFFGRD-DFRPGPFNL---------------------GKFSKPIGIIAVLWVLFMIVI 474 (550)
T ss_pred HHHHHHHHHHHHHHHHHhHHhheeeccc-ccCCCCccc---------------------cccccchHHHHHHHHHHHHHH
Confidence 9999999999999999999988777666 445666654 565 78888999999999999
Q ss_pred HhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhccccchhhhhhcCCcc
Q 007861 497 HYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAEEMKGGVE 570 (587)
Q Consensus 497 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 570 (587)
+++ |+.+++++-.++| +.+++++.++.++++|++++||+ +++|+...+.|
T Consensus 475 l~f-P~~~pvT~~~MNy----------------------a~VV~gg~~lf~li~~~~~~~k~-f~gP~~~~~~~ 524 (550)
T KOG1289|consen 475 LCF-PSVYPVTADNMNY----------------------ACVVYGGVMLFCLIYYFVSARKW-FKGPIPSVLEE 524 (550)
T ss_pred HhC-CcccCCCcccCce----------------------EEEeehhhhhhhhheeeeeccee-ecCCccccccc
Confidence 999 8888888877777 55568889999999998887777 88887765443
No 13
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=1.4e-51 Score=435.59 Aligned_cols=372 Identities=16% Similarity=0.282 Sum_probs=315.4
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
++|+++.++++++.++.++|+|+|..++... . +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4688999999999999999999999988754 4 6888889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSIL 225 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~ 225 (587)
..||++||.+|+.++......+....+|+...++ ...+.+. ..+..++++++.+.+|++|+|..+|+
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~-~~~~~~~------------~~~~~~~~l~~~~~ln~~g~~~~~~i 148 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFG-ATLSPVQ------------ICLATIGVLWLCTVANFGGARITGQI 148 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchHH------------HHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999998877777777788887776 2111111 22455666778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcc---hhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHH
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFG---VKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGI 302 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai 302 (587)
+.+....+++.++++.+.++...+.+++.+ .+.+.+ +.++..++..++|+|.|+|.+++++||+|||+||+||++
T Consensus 149 ~~i~~~~~l~~l~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi 226 (438)
T PRK10655 149 SSVTVWGVIIPVVGLSIIGWFWFSPSLYVA--AWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAV 226 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcccccC--CcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHH
Confidence 999999888877777766655444444321 222222 356777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC
Q 007861 303 VGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRAR 381 (587)
Q Consensus 303 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 381 (587)
..+..+++++|++...+.....|++++.. ++|+.++++...+++...++.+..+++.+++.+++..+.+|++++++|||
T Consensus 227 ~~~~~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg 306 (438)
T PRK10655 227 LGGTLGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEG 306 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999888888888777653 57888888777778888888888899999999999999999999999999
Q ss_pred CCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCch
Q 007861 382 LVPTWLAKVHPSTGTPLNATLFLGLCTASIALF-------TELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSH 454 (587)
Q Consensus 382 ~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 454 (587)
.+|++|+|+| |+++|++|++++.+++.++.+. ..++.+.++.++..++.|.+.+++.+++|+|+++.+||+|
T Consensus 307 ~lP~~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~ 385 (438)
T PRK10655 307 YFPKIFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAK 385 (438)
T ss_pred chhHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhH
Confidence 9999999999 7799999999999887766553 3588999999999999999999999999988876666665
Q ss_pred h
Q 007861 455 T 455 (587)
Q Consensus 455 ~ 455 (587)
.
T Consensus 386 ~ 386 (438)
T PRK10655 386 V 386 (438)
T ss_pred H
Confidence 3
No 14
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=4.7e-51 Score=431.14 Aligned_cols=426 Identities=31% Similarity=0.538 Sum_probs=365.1
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
++|+++.++.+++.++.++|+|++..++..... +|+..+++|+++++..++.+++++|+++++|++||.|+|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999987754 7888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC--CCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGEN--DPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
..|+++||.+++.+....+..+..+++++..+++.. +.+.+... ...+.....+.+++++++.+.+|++|.|..+
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~ 156 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTA---KPGNGGVFNLPALLIVLFLTYILYLGAKESG 156 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhc---CCcccccccHHHHHHHHHHHHHHHhCcHHHH
Confidence 999999999999999999999999999998877511 10111000 0001111224567788889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHH
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIV 303 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~ 303 (587)
|++.++..++++.++++++.++.+.+.+++. ++.+.++.++..++...+|+|.|+|...+++||+|||+|++||++.
T Consensus 157 ~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~ 233 (429)
T TIGR00909 157 KVNDILVVLKVAALLLFAALGAIHFASNNYT---PFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAII 233 (429)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhCcHHhcC---CCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHH
Confidence 9999999999998877776666655544554 3345567778899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCC
Q 007861 304 GSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARL 382 (587)
Q Consensus 304 ~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 382 (587)
.+..++.++|++..+......|.+++.+ ++|+..+.+..++++...++.+..+++.+++.++.+.+.+|+++++||||.
T Consensus 234 ~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~ 313 (429)
T TIGR00909 234 LSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGL 313 (429)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999998888888777654 467878888888899999999999999999999999999999999999999
Q ss_pred CchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHHH
Q 007861 383 VPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLL 462 (587)
Q Consensus 383 lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 462 (587)
+|++|+|+|+|+|+|++|++++++++.++....+++.+.++.+...++.|.+.+++.+++|+|+++.+||
T Consensus 314 lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~~~~~---------- 383 (429)
T TIGR00909 314 LPGSLSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPDIQRA---------- 383 (429)
T ss_pred CcHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCC----------
Confidence 9999999999999999999999999988887788999999999999999999999999999887654443
Q ss_pred HHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 007861 463 SFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAM 542 (587)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 542 (587)
+|.|..|+.+.+.+..+.++........+....+
T Consensus 384 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (429)
T TIGR00909 384 ----------------------------------------------FRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLV 417 (429)
T ss_pred ----------------------------------------------CCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 4556666777777777888777788888889999
Q ss_pred HHHHHHHHhhhh
Q 007861 543 WTCLITLFYVLY 554 (587)
Q Consensus 543 ~~~~~~~~~~~~ 554 (587)
|.++|..+|..|
T Consensus 418 ~~~~g~~~y~~~ 429 (429)
T TIGR00909 418 WMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHcC
Confidence 999999988654
No 15
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=7e-51 Score=434.69 Aligned_cols=401 Identities=18% Similarity=0.259 Sum_probs=325.9
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
++++++|+++.+++.++++|.++|+|+|..++..+.. +||. .+++|++++++.++.+++++|+++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 3456899999999999999999999999999999865 8986 8999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhh
Q 007861 141 VTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTK 220 (587)
Q Consensus 141 ~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k 220 (587)
+.+|+.+||.+||.+|+.+....+........++...++. .+. ...+.++++++..+|++|+|
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~--~~~---------------~~~~~~~~~~~~~lN~~gv~ 150 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD--TPG---------------WIWSALFLGVIFLLNYISVR 150 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--Cch---------------HHHHHHHHHHHHHHHHHcch
Confidence 9999999999999999988777665444444344433320 001 13455666677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc------c----cccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHh
Q 007861 221 ESSILNLIMTIFHVVFFGFIIIAGFCN------G----SVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEE 290 (587)
Q Consensus 221 ~~~~~~~~~~~~~i~~~~~~~i~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 290 (587)
..+++|.+++..|+..++.+++.++.. . +++++.+..+..+.++.+++.+...++|+|.|+|.+++++||
T Consensus 151 ~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E 230 (489)
T PRK10836 151 GFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGE 230 (489)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 999999999999988776655443321 1 112332111112345666666666678999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc---------ccchHHHHHHHhChhHHHHHHHHHHHHHHHH
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL---------KDASFSMAFRNIGWAWASNVVGAGASLGIVA 361 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 361 (587)
+|||+|++|||+..++..+.++|++..++.....|.++.+ ..+|+..+++..+.++...++.+.++.+.++
T Consensus 231 ~knP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~ 310 (489)
T PRK10836 231 SEDPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLS 310 (489)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988888865432 1368888888888888889999999999999
Q ss_pred HHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHH
Q 007861 362 SLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLV 435 (587)
Q Consensus 362 ~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~ 435 (587)
+.++.+++.+|++|++||||.+|++|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|.+.
T Consensus 311 ~~n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~ 389 (489)
T PRK10836 311 AGNSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGI 389 (489)
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 7799999999999988776654 236778898999999999999
Q ss_pred HHHHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCcccccccc
Q 007861 436 ANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMP 515 (587)
Q Consensus 436 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 515 (587)
+++.+++|++.++++ |+ .+.++||.|.+|
T Consensus 390 ~~a~l~~R~~~~~~~--------------------------------------------------~~-~~~~p~~~p~~p 418 (489)
T PRK10836 390 AISHYRFRRGYVLQG--------------------------------------------------HD-LNDLPYRSGFFP 418 (489)
T ss_pred HHHHHHHHHHHHhcC--------------------------------------------------CC-cCCCCCcCCCcc
Confidence 999999888643221 11 123568889999
Q ss_pred HHHHHHHHHHHHHHhcC
Q 007861 516 WPAAISIFLNVFLMTTL 532 (587)
Q Consensus 516 ~~~~~~~~~~~~~~~~~ 532 (587)
+.|+++++.+++++...
T Consensus 419 ~~~~~~~~~~~~~~~~~ 435 (489)
T PRK10836 419 LGPIFAFVLCLIITLGQ 435 (489)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999998887754
No 16
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=8.7e-51 Score=430.99 Aligned_cols=367 Identities=22% Similarity=0.347 Sum_probs=310.4
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRV 141 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~ 141 (587)
++++++|+++.+++.+++++.++|+|+|..++..... +||+.+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3456899999999999999999999999999998864 899999999999999999999999999999999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 142 TFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 142 ~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
.+||.+||++||.+++.+....+.....++.++..+++.. +. ....++++++...+|++|+|.
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---------------~~~~~~~~~l~~~ln~~gv~~ 144 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV--PH---------------WIWVLSVVLIICAVNLMSVKV 144 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--Ch---------------HHHHHHHHHHHHHHHHccchh
Confidence 9999999999999999998888887777888877655411 01 134556667788999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc-------cc-cc---cCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHh
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFC-------NG-SV---QNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEE 290 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~-------~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 290 (587)
.++++.+++.+++..++++++.++. +. +. .+..+.+++.+.++.+++.++..++|+|.|+|.+++++||
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E 224 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGE 224 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 9999999999998877665544321 11 11 1111222344667778889999999999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLG 369 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 369 (587)
+|||+|++|||+..+.+...++|+...++.....|.+++.. ++|+..+++..+.++...++.+..+.+.+++.++++.+
T Consensus 225 ~knP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (457)
T PRK10580 225 AKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFG 304 (457)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888888887764 46888888888888888888888899999999999999
Q ss_pred hHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 370 QARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 370 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 443 (587)
.+|+++++||||.+|++|+|+| |+|+|++|++++.++..+...+ ..++.+.++.+...+++|.+++++.+++|
T Consensus 305 ~sR~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr 383 (457)
T PRK10580 305 VGRMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFR 383 (457)
T ss_pred HHHHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 6899999999987655443322 34778999999999999999999999998
Q ss_pred hhcc
Q 007861 444 YVMI 447 (587)
Q Consensus 444 ~~~~ 447 (587)
++++
T Consensus 384 ~~~~ 387 (457)
T PRK10580 384 RRLP 387 (457)
T ss_pred HHHH
Confidence 8754
No 17
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=7e-51 Score=430.56 Aligned_cols=419 Identities=21% Similarity=0.266 Sum_probs=340.2
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF 143 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 143 (587)
.+++|+++.++++++.++.++|+|+|..++.... .|+..+++|+++++..++.+++++|+++++|++||.|.|+++.+
T Consensus 4 ~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~~ 81 (445)
T PRK10644 4 DADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRCF 81 (445)
T ss_pred CccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHHc
Confidence 4478999999999999999999999999988763 45567899999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
||.+||++||.+|+.+.....+.......|....++.. ++.|. ..+..++++++++.+|.+|+|..+
T Consensus 82 g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------------~~~~~~~~~~~~~~ln~~gvk~~~ 148 (445)
T PRK10644 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-KDPLV------------LTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-CCcHH------------HHHHHHHHHHHHHHHHHhchHHHH
Confidence 99999999999999988777776666667777665521 11121 224566777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCccCC-CCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHH
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKP-GGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGI 302 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai 302 (587)
|+|.+++.++++.++.+.+.++...+.+++.+. ++....++.++..++..++|+|.|+|.+++++||+|||+|++||++
T Consensus 149 ~i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHH
Confidence 999999999988877777666544333332211 0011123456777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccc-ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC
Q 007861 303 VGSVLIVSLLYSLMALSLCLMVPYNKIL-KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRAR 381 (587)
Q Consensus 303 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 381 (587)
+.+..+++++|++..++.....|++++. .++|+.++++...+++...++.+.++++.+++.++++...+|+++++||||
T Consensus 229 ~~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg 308 (445)
T PRK10644 229 IGGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDG 308 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999988887765 357888888877778888888888889999999999999999999999999
Q ss_pred CCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCch
Q 007861 382 LVPTWLAKVHPSTGTPLNATLFLGLCTASIALF-------TELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSH 454 (587)
Q Consensus 382 ~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 454 (587)
.+||+|+|+| |+++|++|++++++++.++.+. ..++.+.++.+...+++|.+++++.+++|+|+++.+|
T Consensus 309 ~lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~--- 384 (445)
T PRK10644 309 LFPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR--- 384 (445)
T ss_pred CccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc---
Confidence 9999999999 5799999999999998776654 2488899999999999999999999988877632111
Q ss_pred hHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCCh
Q 007861 455 TLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTLKL 534 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 534 (587)
|.++++++++++.+++++.....
T Consensus 385 ---------------------------------------------------------p~~~~~~~~~~~~~~~~~~~~~~ 407 (445)
T PRK10644 385 ---------------------------------------------------------PAYLAVTLIAFVYCIWAVVGSGA 407 (445)
T ss_pred ---------------------------------------------------------cchhHHHHHHHHHHHHHHHHhhH
Confidence 34567788888888888776666
Q ss_pred HHHHHHHHHHHHHHHHh-hhhcccc
Q 007861 535 LSYQRFAMWTCLITLFY-VLYGVHS 558 (587)
Q Consensus 535 ~~~~~~~~~~~~~~~~~-~~~~~~~ 558 (587)
++......+.+++...| +.++|||
T Consensus 408 ~~~~~~~~~~~~~~~~y~~~~~~~~ 432 (445)
T PRK10644 408 KEVMWSFVTLMVITAFYALNYNRLH 432 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 66655556566666555 4444444
No 18
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=3.1e-50 Score=427.47 Aligned_cols=368 Identities=20% Similarity=0.348 Sum_probs=315.7
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF 143 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 143 (587)
++++|+++.+++.++++|.++|+|+|..++..... +||+.+++|++++++.++.+.+++|++++.|..||.|.|+++.+
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~~ 94 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLL 94 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHh
Confidence 45899999999999999999999999999999865 88888999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
|+..||++||.+++++....++++...+.|+..+++.. +.| ..+++++++++.+|++|+|..+
T Consensus 95 g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~--~~~---------------~~~~~~~~~~~~iN~~g~~~~~ 157 (469)
T PRK11049 95 GPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL--SDW---------------VASLAVVLLLLSLNLATVKMFG 157 (469)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHH---------------HHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999998887778888888887665411 111 3455667788899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc------c------ccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhh
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCNG------S------VQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEI 291 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 291 (587)
++|.+.+.+|++.++.+++.++... + .+++.+.+++.|.++.+++.++...+|+|.|+|.+++++||+
T Consensus 158 ~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~ 237 (469)
T PRK11049 158 EMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAET 237 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHh
Confidence 9999999999988887777655321 0 112222234556777889999999999999999999999999
Q ss_pred cCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 292 QNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQ 370 (587)
Q Consensus 292 k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 370 (587)
|||+|++||++..+.+...++|++...+.....|++++.. ++|+.++++..++++...++.+.++++.+++.++.+.+.
T Consensus 238 knP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~ 317 (469)
T PRK11049 238 KDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFST 317 (469)
T ss_pred cCHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888899999999999888888888754 478888888888889999999999999999999999999
Q ss_pred HHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHH---hh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 371 ARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIA---LF-----TELNIVLEMISISTLLVFYLVANALIYR 442 (587)
Q Consensus 371 sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 442 (587)
+|++|++||||.+|++|+|+| |+|+|++|+++++++..+.. .+ ..++.+.++.++...+.|.+++++++++
T Consensus 318 sR~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~l 396 (469)
T PRK11049 318 SRMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVY 396 (469)
T ss_pred HHHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 56999999999877654321 11 2578888989999999999999999999
Q ss_pred hhhccCCC
Q 007861 443 RYVMISNN 450 (587)
Q Consensus 443 r~~~~~~~ 450 (587)
|+++++.+
T Consensus 397 r~~~p~~~ 404 (469)
T PRK11049 397 RKQRPHLH 404 (469)
T ss_pred HHhhhhcC
Confidence 98887654
No 19
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=4.4e-50 Score=429.09 Aligned_cols=447 Identities=17% Similarity=0.198 Sum_probs=346.9
Q ss_pred CCcccccccChhHHHHHhhcccc-cccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhH
Q 007861 62 SGADMKRKLMWYDLVALGVGGML-GVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYL 139 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 139 (587)
++++++|+++.++.++++++.+. ..|++...+..... +|| +.+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 77889999999999999999652 37888777766644 888 5899999999999999999999999999999999999
Q ss_pred HHHhc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC-CcccccccccccCCcchHHHHHHHHHHHHH
Q 007861 140 RVTFG----EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPN-SWRVEVDGLFKGYNMLDFPAVALVLLLTLC 214 (587)
Q Consensus 140 ~~~~g----~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (587)
++.+| +..||++||.+++++....++.....+.++........+. .|. +++ .....+.++++++.+++
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~~~-~~~~~i~~~~~~~~~~i 157 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI------PTR-WHIFGIMIGIHLIHALI 157 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc------ccC-chhhhhHHHHHHHHHHH
Confidence 99986 5779999999999999999988888888887665322111 111 011 11235666777889999
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc---------ccCccCCC-CCCCcchhHHHHHHHHHHHhccchhhh
Q 007861 215 LCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGS---------VQNLVKPG-GLAPFGVKGIVDGAATVYFSYIGYDSV 284 (587)
Q Consensus 215 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~e~~ 284 (587)
|++|.|..++++.+..+++++.++++.+..+...+ ++++.+.. ++.+.++ +++.++....|+|.|+|.+
T Consensus 158 n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~ 236 (482)
T TIGR00907 158 NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGT 236 (482)
T ss_pred HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchh
Confidence 99999999999999988888777654444332211 11122111 3334444 4667777788999999999
Q ss_pred hchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhccc-CCcc-c--ccchHHHHHHH-hChhHHHHHHHHHHHHHH
Q 007861 285 STLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVP-YNKI-L--KDASFSMAFRN-IGWAWASNVVGAGASLGI 359 (587)
Q Consensus 285 ~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~-~~~~-~--~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~ 359 (587)
++++||+|||+|++|||+..++.+..+++++..+......+ .++. + .++|+.+++.. .|.++...++.+.++++.
T Consensus 237 ~~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~ 316 (482)
T TIGR00907 237 AHMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTS 316 (482)
T ss_pred hHHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 99999999999999999999998877766655544443332 2222 1 12588887764 566677788888889999
Q ss_pred HHHHHHHHHhhHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHH
Q 007861 360 VASLLVAMLGQARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALF-----TELNIVLEMISISTLLVF 432 (587)
Q Consensus 360 ~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~ 432 (587)
+++.++++.+.||+++++||||.+| ++|+|+|||+|+|++|++++.+++.++.+. ..++.+.++.+...+++|
T Consensus 317 ~~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y 396 (482)
T TIGR00907 317 FFCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSY 396 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 999999988899999999999998776655 368999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhcccc-chhhHHHHHHHHHHHHHHhhccCCCCCCcccc
Q 007861 433 YLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQL-WGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSV 511 (587)
Q Consensus 433 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 511 (587)
.++.++.+++|++ ++++||++. +++ +.++.++++|+.+..+..++ |...+.++..+
T Consensus 397 ~~~~~~~l~~~~~-~~~~~~f~l---------------------g~~~~~~~~~~~~~~~~~~v~~~~-P~~~p~~~~~~ 453 (482)
T TIGR00907 397 VIPIICKLAKGRN-TIAPGPFWL---------------------GKYGFFVNAVAVAWTVFSSVLFSF-PPVLPVTPENM 453 (482)
T ss_pred HHHHHHHHHhcCC-CCCCCCCcC---------------------CcchHHHHHHHHHHHHHHHhheeC-CCCCCCCcccC
Confidence 9998877655544 566788875 444 67888899999999888888 65555555555
Q ss_pred ccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhccccchhhh
Q 007861 512 PFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTYEAE 563 (587)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (587)
++ +.+.+++.++++.++|..++||+ ++||
T Consensus 454 ny----------------------~~~~~~~~~~~~~~~~~~~~r~~-~~gp 482 (482)
T TIGR00907 454 NY----------------------AVVVFAGVLAISLVYWKYKGRKE-FTGP 482 (482)
T ss_pred Ch----------------------HhHHHHHHHHHHHHHheEeceee-ccCc
Confidence 55 44456888889999998888877 6664
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=5.1e-50 Score=422.08 Aligned_cols=361 Identities=17% Similarity=0.237 Sum_probs=305.2
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
.+|+++.++++++.++.++|+|+|..++... . +|+..+++|+++++.+++.+++++|+++++|++||.|.|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4689999999999999999999999999865 3 788899999999999999999999999999999999999999 899
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSIL 225 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~ 225 (587)
.+||.+||.+|........+.......|+...++...+ .+ ...+.+++++++.+++|.+|+|..+++
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~-~~------------~~~~~~~~i~~~~~~ln~~gvk~~~~i 146 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLND-PI------------PAGIACIAIVWVFTFVNMLGGTWVSRL 146 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCC-hH------------HHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 99999999999877777777777777888777652111 11 012455667778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCcc-CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHH
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGSVQNLV-KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVG 304 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~ 304 (587)
+.+..+++++.++.+.+.+..+.+.+++. +..+..+.++.+++.++..++|+|.|+|.+++++||+|||+||+||++..
T Consensus 147 ~~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~ 226 (435)
T PRK10435 147 TTIGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHH
Confidence 99998888877666655554443333221 11112234567899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCccc-ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCC
Q 007861 305 SVLIVSLLYSLMALSLCLMVPYNKIL-KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLV 383 (587)
Q Consensus 305 ~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~l 383 (587)
+..+++++|++..++.....|.+++. .++|+..+++..++++...++.+.++++++++.+++++..+|..+++||||.+
T Consensus 227 ~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~l 306 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNF 306 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999999999988875 46799888888888999999999899999999999999999999999999999
Q ss_pred chHHhhhcCCCCcchHHHHHHHHHHHHHHhh------------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 384 PTWLAKVHPSTGTPLNATLFLGLCTASIALF------------TELNIVLEMISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 384 P~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 443 (587)
||+|+|+| |+|+|++|++++++++.++... ..++.+.++.+...++.|++++++.++.|
T Consensus 307 P~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 307 PKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred cHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 8899999999988776544321 24889999999999999999999987543
No 21
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=1.9e-49 Score=422.50 Aligned_cols=418 Identities=20% Similarity=0.264 Sum_probs=325.5
Q ss_pred CCcccccccChhHHHHHhhccc-ccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 62 SGADMKRKLMWYDLVALGVGGM-LGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
++++++|+++.++.++++++.+ ++.|++..++..... +||..+++|++++++.++.+++++|+++++|++||.|+|++
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 7889999999999999999986 789999999999865 89999999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC----CCCCCcccccccccccCCcchHHHHHHHHHHHHHHH
Q 007861 141 VTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGE----NDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLC 216 (587)
Q Consensus 141 ~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (587)
+.+||.+||++||.+++++....+........++....+. ..++.+.. +....+..+++++++++.+++|+
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~in~ 160 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTS-----PSGAANAVLLGSVLLVLTTVINC 160 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccC-----CCchHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887777776666565443210 00111100 00011133667777788999999
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccC---ccCC-CCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 217 HGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQN---LVKP-GGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 217 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
+|+|..++++.+...++++.++++++.++.+.+.+. +.+. ++..+.....++.+....+|+|.|+|.+++++||+|
T Consensus 161 ~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~k 240 (475)
T TIGR03428 161 IGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETK 240 (475)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhc
Confidence 999999999999999998877766665554432111 1111 111222234567788888999999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCc--ccccchHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNK--ILKDASFSMAF-RNIGWAWASNVVGAGASLGIVASLLVAMLG 369 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 369 (587)
||+|++||++..++.+.+++|.+..+......+..+ ....++.+.++ +..+.++.. .+...++++.+++.++.+.+
T Consensus 241 nP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~ 319 (475)
T TIGR03428 241 NPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQTA 319 (475)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888877777666554321 11122233334 344545544 44456678889999999999
Q ss_pred hHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 370 QARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALF-----TELNIVLEMISISTLLVFYLVANALIYR 442 (587)
Q Consensus 370 ~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 442 (587)
.||++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++ ..|+.+.++.++...++|.++.++.+.+
T Consensus 320 ~sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~ 399 (475)
T TIGR03428 320 GSRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLR 399 (475)
T ss_pred HHHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 489999999999999999999998777665 3588999999999999999998887776
Q ss_pred hhhc------cCCCCCchhHHHHHHHHHHHHHHHHhhhhcccc-chhhHHHHHHHHHHHHHHhhccCCCCCCc
Q 007861 443 RYVM------ISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQL-WGLPLFGGLMLIVTAFFHYSMSRVSHPTG 508 (587)
Q Consensus 443 r~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 508 (587)
|+|. +.+++||+. |++ +++|+++++|+.+..+++++ |+..+.++
T Consensus 400 ~~~~~~~~~~~~~~g~f~l---------------------g~~g~~vn~~a~~~~~~~~v~~~~-P~~~~~~~ 450 (475)
T TIGR03428 400 RLRGWPRGDQTDPAGLFSL---------------------GRWGLPVNILAVVYGALMVVNLSW-PRPEVYDP 450 (475)
T ss_pred HHhccCCccCCCCCCCCCC---------------------chhHHHHHHHHHHHHHHHHHHHHC-CCCCCCCC
Confidence 6543 124566665 678 99999999999999999999 65545444
No 22
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=9.2e-49 Score=418.76 Aligned_cols=362 Identities=20% Similarity=0.286 Sum_probs=301.8
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcccc-CCchhhhHHHHhc
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPV-AGGAFSYLRVTFG 144 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~~g 144 (587)
||+++.+|+.+++++.++|+|+|..++..... +||. .+++|++++++.++.+++++|+++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999966 8885 7999999999999999999999999995 5567789999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
|.+||++||.+|++++...+......+.++....+.. + ......+++++.+++|++|+|..++
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---------------~~~~~~~~~~~~~~in~~gv~~~~~ 142 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV--N---------------PAVWIAIFYVFIVIINLFGVKGYGE 142 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC--C---------------HHHHHHHHHHHHHHHHHhcchHHHH
Confidence 9999999999999999999999988888887543300 0 0122344556778999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc--cc--------ccCccCCCCCCCc----chhHHHHHHHHHHHhccchhhhhchhHh
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCN--GS--------VQNLVKPGGLAPF----GVKGIVDGAATVYFSYIGYDSVSTLAEE 290 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~--~~--------~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~G~e~~~~~~~E 290 (587)
++.+++.+|+..++.+++.++.. .+ ..++.+.+.+.+. .+.++..++..++|+|.|+|.+++++||
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 99999999887776655544321 11 1112222233332 2567888999999999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc--c--------ccchHHHHHHHhChhHHHHHHHHHHHHHHH
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKI--L--------KDASFSMAFRNIGWAWASNVVGAGASLGIV 360 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~--~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 360 (587)
+|||+|++||+++.+..++.++|++..++.....|.++. . .++|+..+++..+.+++..++.+.++++.+
T Consensus 223 ~knP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~ 302 (478)
T TIGR00913 223 AANPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVL 302 (478)
T ss_pred hcChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHH
Confidence 999999999999999999999999998888777776642 1 126777777888888899999999999999
Q ss_pred HHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHH
Q 007861 361 ASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYL 434 (587)
Q Consensus 361 ~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~ 434 (587)
++.++.+++.+|++|++||||.+|++|+|+| |+++|++|++++.+++.+..+. ..++.+.++.+...++.|++
T Consensus 303 ~~~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~ 381 (478)
T TIGR00913 303 SAANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMC 381 (478)
T ss_pred HHHHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 7899999999999887654443 24788999999999999999
Q ss_pred HHHHHHHHhhhcc
Q 007861 435 VANALIYRRYVMI 447 (587)
Q Consensus 435 ~~~~~~~~r~~~~ 447 (587)
.+++.+++|++++
T Consensus 382 ~~~~~i~~r~~~~ 394 (478)
T TIGR00913 382 ICLSHIRFRKAMK 394 (478)
T ss_pred HHHHHHHHHHHHH
Confidence 9999998887643
No 23
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=7.9e-49 Score=417.52 Aligned_cols=420 Identities=19% Similarity=0.267 Sum_probs=341.7
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcccc-CCchhhhHHHHh
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPV-AGGAFSYLRVTF 143 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~~ 143 (587)
++|++|.+++.+++++.++|+|+|..++.... .+|++ .+++|++++++.++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~-~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLAS-VAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 37889999999999999999999999998775 47886 7899999999999999999999999999 999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDP-NSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
||.+||++||.+|+.+.....++.....+++...++.... +.+ ...+.+++++++.+.+|++|+|..
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~------------~~~~~~~~~~~~~~~ln~~Gi~~~ 151 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPV------------PSILGASVLLWVFTFLVLRGVRQA 151 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcH------------HHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999999888888877777888777652111 111 122556677778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCcc----CC-CCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCC
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFCNGSVQNLV----KP-GGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKS 297 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ 297 (587)
+|++.+.+.++++.++.+++.++...+.+++. +. .+..+..+.+++.++..++|+|.|+|.+++++||+|| +|+
T Consensus 152 ~~i~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~ 230 (473)
T TIGR00905 152 AFINTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSD 230 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-ccc
Confidence 99999999999988877777665433333221 11 1111224567888889999999999999999999999 999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cch-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007861 298 LPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DAS-FSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLC 375 (587)
Q Consensus 298 ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (587)
+||++..+..+++++|++...+.....|.+++.+ ++| ..++.+...+++...++.+.++++.+++.++.+.+.+|++|
T Consensus 231 iPrai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ 310 (473)
T TIGR00905 231 VGKATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPF 310 (473)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888888877653 567 67777777778888999999999999999999999999999
Q ss_pred HhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 007861 376 VIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF-----TELNIVLEMISISTLLVFYLVANALIYRRYVMISNN 450 (587)
Q Consensus 376 a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 450 (587)
+|||||.+|++|+|+|+ +|+|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|++.
T Consensus 311 amardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~~-- 387 (473)
T TIGR00905 311 SAAKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGTY-- 387 (473)
T ss_pred HHHhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--
Confidence 99999999999999995 599999999999887655543 4688999999999999999999999998877521
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHh
Q 007861 451 PPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMT 530 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
|+ .+.|+.++.+.++++.+.++..
T Consensus 388 --------------------------------------------------~~------~~~~~~~~~~~l~~~~~~~~~~ 411 (473)
T TIGR00905 388 --------------------------------------------------PK------IKNRKALIVGVIACVYSIWLLY 411 (473)
T ss_pred --------------------------------------------------cc------cccchHHHHHHHHHHHHHHHHH
Confidence 11 1112345666666666666666
Q ss_pred cCChHHHHHHHHHHHHHHHHhhhhcccc
Q 007861 531 TLKLLSYQRFAMWTCLITLFYVLYGVHS 558 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (587)
...........+++++|...|.++.|++
T Consensus 412 ~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 412 AAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555566777788888787665554
No 24
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-49 Score=399.97 Aligned_cols=403 Identities=25% Similarity=0.402 Sum_probs=348.1
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGP-S-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYL 139 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 139 (587)
++.+++|+++.+.+..+.+++++|+|+|..|..+..+ +|+ + ++..|+++++++..-++||+|+++.+|++||+|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 4456789999999999999999999999999999966 665 4 889999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHHHHH-HHHHHHHHHHHH-HHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHh
Q 007861 140 RVTFGEFVGYFAGANILMEYVL-SNAAVARSFTDY-LCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCH 217 (587)
Q Consensus 140 ~~~~g~~~g~~~g~~~~l~~~~-~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (587)
.+.+|+.+||...|.-++.... ..+..+..+++| +...++..+.+.+ ...+++.+++++++++|+.
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~------------~~~lla~~~l~~lt~~n~~ 152 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRV------------ASKLLAAALLVLLTLINSF 152 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchH------------HHHHHHHHHHHHHHHHhhh
Confidence 9999999999999977766655 448999999999 6666652222221 2448889999999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccc---ccccCccCCC-CCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcC
Q 007861 218 GTKESSILNLIMTIFHVVFFGFIIIAGFCN---GSVQNLVKPG-GLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQN 293 (587)
Q Consensus 218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 293 (587)
++|+..|+|.+++..|++.+.++++.++.. .+.+|+.+.. .....+...+..++...+|+|.|+|....++||+||
T Consensus 153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEikn 232 (479)
T KOG1287|consen 153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKN 232 (479)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcC
Confidence 999999999999999999999999998764 3344443221 111233455778888999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007861 294 PSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAF-RNIGWAWASNVVGAGASLGIVASLLVAMLGQAR 372 (587)
Q Consensus 294 p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 372 (587)
|+||.|||+..++.++++.|++.+++...+++.|++..++.++..+ +...+.+. +++.+.+.+++++++++.+.+.||
T Consensus 233 P~ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR 311 (479)
T KOG1287|consen 233 PRRTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSR 311 (479)
T ss_pred ccccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999886665554444 56666666 999999999999999999999999
Q ss_pred HHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007861 373 YLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPP 452 (587)
Q Consensus 373 ~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 452 (587)
+.+++||+|+||+.|+..|+|..+|..++++++..+.+..+.++++.+++..++...+.+.+..++++++|+|+++.+||
T Consensus 312 ~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rP 391 (479)
T KOG1287|consen 312 LFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRP 391 (479)
T ss_pred HHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 99999999999999999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhccc
Q 007861 453 SHTLLFLFLLSFCAICFSLSLKIQQQ 478 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (587)
+|..+..+.+..+....+....+...
T Consensus 392 iKvpl~~p~~~~~~~i~lvvip~~~~ 417 (479)
T KOG1287|consen 392 IKVPLFIPILFLLICIFLVVIPIISD 417 (479)
T ss_pred EeeeeehHHHHHHHHHHHhheeeeec
Confidence 99988777766666666666655444
No 25
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=1.1e-48 Score=419.89 Aligned_cols=381 Identities=24% Similarity=0.377 Sum_probs=311.5
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhH
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGP-S-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYL 139 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~ 139 (587)
++++++|+++.+++++++++.++|+|+|..++..... +|+ + .+++|++++++.++.+++++|+++++|++||.|.|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998865 666 4 568999999999999999999999999999999999
Q ss_pred HHHhchhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHh
Q 007861 140 RVTFGEFVGYFAGANILME-YVLSNAAVARSFTDYLCH-AVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCH 217 (587)
Q Consensus 140 ~~~~g~~~g~~~g~~~~l~-~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (587)
++.+||.+||+++|..++. +....+..+..+++|+.. .++....+.|. ..+++++++++.+.+|++
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~------------~~~i~~~~i~~~~~ln~~ 182 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWA------------IRLVAVLCVLLLTLVNCL 182 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHH------------HHHHHHHHHHHHHHHHHh
Confidence 9999999999999988763 345566666767777543 33311111221 236777788889999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccc---ccCccCCCCCC--CcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 218 GTKESSILNLIMTIFHVVFFGFIIIAGFCNGS---VQNLVKPGGLA--PFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
|+|..+|++.+++.++++.++++++.++.... .++......+. +.+..++..++..++|+|.|+|.+++++||+|
T Consensus 183 Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~k 262 (501)
T TIGR00911 183 SVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVK 262 (501)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhc
Confidence 99999999999999999988777766654321 11111111111 12456788889999999999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMA-FRNIGWAWASNVVGAGASLGIVASLLVAMLGQA 371 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 371 (587)
||+|++||++..+..+++++|++..++.....|.+++..+++.... .+...+ +...++.+.+.++.+++.++.+.+.+
T Consensus 263 nP~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~s 341 (501)
T TIGR00911 263 NPYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSS 341 (501)
T ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998888888777654433332 233333 55677788888999999999999999
Q ss_pred HHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 007861 372 RYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNP 451 (587)
Q Consensus 372 R~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 451 (587)
|+++++||||.+|++|+|+|+|+++|++|++++++++.+.....++..+.++.+....+.|.+..++.+++|+|+++.+|
T Consensus 342 R~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~r 421 (501)
T TIGR00911 342 RLFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNR 421 (501)
T ss_pred HHHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCC
Confidence 99999999999999999999999999999999998888777667777788888888899999999999999999999999
Q ss_pred CchhH
Q 007861 452 PSHTL 456 (587)
Q Consensus 452 ~~~~~ 456 (587)
|+|..
T Consensus 422 p~r~p 426 (501)
T TIGR00911 422 PIKVP 426 (501)
T ss_pred CccCc
Confidence 98863
No 26
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.7e-48 Score=411.10 Aligned_cols=350 Identities=20% Similarity=0.304 Sum_probs=301.6
Q ss_pred HhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHHHHHHHH
Q 007861 78 LGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILM 157 (587)
Q Consensus 78 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~l 157 (587)
+++|+++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|++||.|.|++|.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578999999999999998865 8889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 007861 158 EYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFF 237 (587)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~ 237 (587)
.++...+.+....+.+++...+ . . ....++++++++.+.+|++|+|..+++|.+++.+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-----~-------~-----~~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~l 143 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVP-----G-------I-----PIWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAI 143 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-----c-------C-----cHHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHH
Confidence 9999888887776666654432 0 0 022667788888999999999999999999999999988
Q ss_pred HHHHhhhccccc-------ccC---ccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHH
Q 007861 238 GFIIIAGFCNGS-------VQN---LVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVL 307 (587)
Q Consensus 238 ~~~~i~~~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~ 307 (587)
+.+++.++.... ..+ ..+.+++.|+++.+++.++..++|+|.|+|.+++.+||+|||+|++||++..+..
T Consensus 144 i~~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~ 223 (446)
T PRK10197 144 LAFIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIW 223 (446)
T ss_pred HHHHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHH
Confidence 777666543211 011 1112244567788899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCcccc--cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch
Q 007861 308 IVSLLYSLMALSLCLMVPYNKILK--DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPT 385 (587)
Q Consensus 308 ~~~v~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~ 385 (587)
.+.++|++..++.....|+++.+. .+++..+.+..++++...++.+.++++.+++.++++++.+|++|++||||.+|+
T Consensus 224 ~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~ 303 (446)
T PRK10197 224 RISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPA 303 (446)
T ss_pred HHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCH
Confidence 999999999999988888876543 346677788889899999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 007861 386 WLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRRYVM 446 (587)
Q Consensus 386 ~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 446 (587)
+|+|+| |+|+|++|++++.+++.+..+. ..++.+.++.+...++.|.+++++.+++|++.
T Consensus 304 ~~~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~ 369 (446)
T PRK10197 304 VMGKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKIL 369 (446)
T ss_pred HHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8899999999998777655443 25889999999999999999999999988864
No 27
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-50 Score=422.05 Aligned_cols=483 Identities=34% Similarity=0.552 Sum_probs=369.0
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhcccc-CCchhhhHHHH
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPV-AGGAFSYLRVT 142 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~-~GG~y~~~~~~ 142 (587)
++++|+|+.+|+.++++|.++|+|+|+..|.++.+.+|++.+++++++++..++.+++++|++.++|. +||.|.|+++.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 57999999999999999999999999999999988666679999999999999999999999999999 59999999999
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHH-Hhhhhh
Q 007861 143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCL-CHGTKE 221 (587)
Q Consensus 143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~k~ 221 (587)
.|+.+||.+||.|++.|++..++++.+.+.+++.+.+ ...+....++.+...+..+.+++++++.++.+- +.++|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~---~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ge~ef 182 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG---ASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAYGEVEF 182 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc---cccccccccCCCCCccHHHHHHHHHHHHHHHHhhccceee
Confidence 9999999999999999999999999999999999861 112221112222222223344444444433333 366777
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccccCc------cCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcC
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFCNGSVQNL------VKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPS 295 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 295 (587)
....+.+++.+.++.+.+++..|..+.|.+++ .+++++.|.++.+++.++..+.|+|.|+|..+..+||+|||+
T Consensus 183 ~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~ 262 (554)
T KOG1286|consen 183 SLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPR 262 (554)
T ss_pred hHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCc
Confidence 78888888888888777777777777665443 445678888899999999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcccCCc--ccccchHHHHHH----HhChhHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 296 KSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNK--ILKDASFSMAFR----NIGWAWASNVVGAGASLGIVASLLVAMLG 369 (587)
Q Consensus 296 r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 369 (587)
|++|+|+..++....++|++..+.+...+|+++ ++++++....+. ..+.+.+..++++++++++.+++++.+++
T Consensus 263 k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~ 342 (554)
T KOG1286|consen 263 KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYA 342 (554)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999999998 777665544444 44444555599999999999999999999
Q ss_pred hHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhc------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 370 QARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTE------LNIVLEMISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 370 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~~~~r 443 (587)
.+|.+++||+||.+||+|+++|+| |+|++|++++.+++.+..+..+ |+++.++.+++.++.|.+++++++++|
T Consensus 343 ~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 343 GSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSHLRFR 421 (554)
T ss_pred hHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHHeeee
Confidence 999999999999999999999966 9999999999999998888744 599999999999999999999999999
Q ss_pred hhccCCCC-----Cchh-------HH-HHHHHHHHHHHHHHhhhhccc-c--ch--hhHHHH--HHHHHHHHHHhhccCC
Q 007861 444 YVMISNNP-----PSHT-------LL-FLFLLSFCAICFSLSLKIQQQ-L--WG--LPLFGG--LMLIVTAFFHYSMSRV 503 (587)
Q Consensus 444 ~~~~~~~~-----~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~-~--~~--~~~~~~--~~~~~~~~~~~~~p~~ 503 (587)
+..+.+.+ +++. .. ......+...-+.....+.+. + +. ...++. ..+++.....+++|+.
T Consensus 422 ~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~~~~~ 501 (554)
T KOG1286|consen 422 YAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYAKPTN 501 (554)
T ss_pred ecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheeecccc
Confidence 87544331 2221 11 111111111111122222121 2 11 112222 2222222222332221
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHhcCChHHHH--HHHHHHHHHHHHhhh-hcccc
Q 007861 504 SHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQ--RFAMWTCLITLFYVL-YGVHS 558 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~ 558 (587)
. ..|+.|.+.+..+..++..+...+|. ....|..++...|.. |+.+|
T Consensus 502 ~--------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~ 551 (554)
T KOG1286|consen 502 T--------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRH 551 (554)
T ss_pred c--------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhc
Confidence 1 44555566677777777777778888 889998888887866 55555
No 28
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=1.2e-47 Score=401.84 Aligned_cols=356 Identities=20% Similarity=0.270 Sum_probs=291.2
Q ss_pred cChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHH
Q 007861 70 LMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGY 149 (587)
Q Consensus 70 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 149 (587)
++.|+..++.+++++|+|+|..++..... +||..+++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999998865 88899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007861 150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIM 229 (587)
Q Consensus 150 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~ 229 (587)
.+||.+++.+....++.......++...++.. .+. ...+++++.++.+.+|++|+|..+|++.++
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~------------~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~ 144 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWS---SWQ------------LLLAELLTLALLWLLNLRGASSSANLQTVI 144 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCC---Cch------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999998877766666555667777666511 110 124566677788899999999999999988
Q ss_pred HHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHH
Q 007861 230 TIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIV 309 (587)
Q Consensus 230 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~ 309 (587)
..+.+..+..+... .+.+..++. ..+..+.++.+++.++..++|+|.|+|.+++++||+|||+||+||++..+..++
T Consensus 145 ~~~~~~i~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~ 221 (410)
T PRK11021 145 ALLIVALVVAIWWA--GDIKPADIP-FPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLA 221 (410)
T ss_pred HHHHHHHHHHHHHH--cCCchhcCC-CCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHH
Confidence 76554433322211 122222221 112234567788999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCccc-ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHh
Q 007861 310 SLLYSLMALSLCLMVPYNKIL-KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLA 388 (587)
Q Consensus 310 ~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 388 (587)
.++|++.+++.....+.++.. .++|..++++...+++...++.+..+++.+++.++++.+.+|++|++||||.+||+|+
T Consensus 222 ~~lYil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~ 301 (410)
T PRK11021 222 GLVYWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLA 301 (410)
T ss_pred HHHHHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHH
Confidence 999999988877666554432 3467777776655566677788888899999999999999999999999999999999
Q ss_pred hhcCCCCcchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 007861 389 KVHPSTGTPLNATLFLGLCTASIALF-----TELNIVLEMISISTLLVFYLVANALIYRRYV 445 (587)
Q Consensus 389 ~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 445 (587)
|+| |+|+|++|++++.+++.+..++ .+++.+.++.+...++.|.+.+++.++++++
T Consensus 302 k~~-~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 302 RLS-ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred hhc-cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999 7799999999998877665543 4688899999999999999999999887754
No 29
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=1.3e-46 Score=399.86 Aligned_cols=412 Identities=18% Similarity=0.258 Sum_probs=330.5
Q ss_pred cccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccC-CchhhhHHHHhch
Q 007861 68 RKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVA-GGAFSYLRVTFGE 145 (587)
Q Consensus 68 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~-GG~y~~~~~~~g~ 145 (587)
|+++.+++.++.+++++|+|+|..++..... +|+. .+++|++++++.++.+++++|+++++|++ ||.|.|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998855 7886 78999999999999999999999999986 5999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSIL 225 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~ 225 (587)
..||++||.+|+++......+......++...++...... .......+.++++.+..+|++|+|..+++
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-----------~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i 148 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGN-----------NPPSIIGASVLLWCVHFLVLRGVEGAAFI 148 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC-----------cHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 9999999999999988777777666667666554211100 00012445566667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCccC-----CC-CC-CCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCc
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGSVQNLVK-----PG-GL-APFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSL 298 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-----~~-~~-~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~i 298 (587)
|.+++..|++.++.+++.++...+.+++.+ .+ ++ .+..+.++..++..++|+|.|+|.+++++||.|| +||+
T Consensus 149 ~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~i 227 (468)
T TIGR03810 149 NTITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDV 227 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccc
Confidence 999999999888777776654322222211 00 01 1222455677888899999999999999999999 7999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cch-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007861 299 PLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DAS-FSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCV 376 (587)
Q Consensus 299 p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (587)
||++..+...+.++|++..++.....|.+++.+ ++| ...+++...++++..++.+.++++.+++.++++.+.+|++|+
T Consensus 228 p~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a 307 (468)
T TIGR03810 228 GKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLL 307 (468)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888777653 344 666777777789999999999999999999999999999999
Q ss_pred hhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CC
Q 007861 377 IGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF-----TELNIVLEMISISTLLVFYLVANALIYRRYVMIS-NN 450 (587)
Q Consensus 377 ~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~ 450 (587)
+||||.+||+|+|+| |+|+|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.++.|+|+++ ..
T Consensus 308 ~ardg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~ 386 (468)
T TIGR03810 308 MAKDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQERG 386 (468)
T ss_pred HHhCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 999999999999999 7899999999998887655443 4588999999999999999999999988876521 11
Q ss_pred CCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHh
Q 007861 451 PPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMT 530 (587)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
|+. .++.+.++.+.+++++.
T Consensus 387 ~~~------------------------------------------------------------~~~~~~l~~~~~~~~~~ 406 (468)
T TIGR03810 387 RRK------------------------------------------------------------QLLIGLVALLYAVWLIY 406 (468)
T ss_pred hhh------------------------------------------------------------hHHHHHHHHHHHHHHHH
Confidence 111 13556677777777776
Q ss_pred cCChHHHHHHHHHHHHHHHHhhh
Q 007861 531 TLKLLSYQRFAMWTCLITLFYVL 553 (587)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~ 553 (587)
....+........+++|+..|+.
T Consensus 407 ~~~~~~~~~~~~~~~~g~~~y~~ 429 (468)
T TIGR03810 407 AAGLKYLLLSAILYAPGIYFYAR 429 (468)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
Confidence 66666666667777788777754
No 30
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=1.9e-46 Score=419.10 Aligned_cols=427 Identities=14% Similarity=0.166 Sum_probs=335.9
Q ss_pred ccccccChhHHHHHh-hcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhc-cccCCchhhhHHH
Q 007861 65 DMKRKLMWYDLVALG-VGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQ-IPVAGGAFSYLRV 141 (587)
Q Consensus 65 ~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~-~P~~GG~y~~~~~ 141 (587)
..+|++|+++.+++- +++++|+|+|..++.+.+. +|.. +++.|+++++++++++++++|++++ +|++||.|.|++|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisr 151 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISR 151 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHH
Confidence 456889999999988 9999999999999999976 7765 8899999999999999999999998 9999999999999
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 142 TFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 142 ~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
.+|+.+|+..||.+++++.+..+.++.++++|+..+++.... ... ..+.+...+++++++++++++|++|+|.
T Consensus 152 alGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~-~~~------~~~~~~~~iia~i~l~ll~~In~~Gvk~ 224 (953)
T TIGR00930 152 SLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGS-KIM------VDPINDIRIYGTVTVVVLLGISFAGMEW 224 (953)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-ccc------cCccccchHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999988752110 000 0011113478888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccc-----------cCccC-CCCCCCcchhHHHHHHHHHHHhccchhhhhchhH
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFCNGSV-----------QNLVK-PGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAE 289 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~ 289 (587)
.+|++.++++++++.++.+++.++..... +.+.+ ..+..+.+..+++..+...+++|+|+|+.++++|
T Consensus 225 ~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sg 304 (953)
T TIGR00930 225 ENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISG 304 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888777665532110 01110 0111122223366667777889999999999999
Q ss_pred hhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cc------------------hHHH----HHH-HhChh
Q 007861 290 EIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DA------------------SFSM----AFR-NIGWA 345 (587)
Q Consensus 290 E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~------------------~~~~----~~~-~~~~~ 345 (587)
|+|||+|++|||++.++++++++|++.++++....+.+.... +. |... .+. .....
T Consensus 305 ElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~ 384 (953)
T TIGR00930 305 DLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVS 384 (953)
T ss_pred hccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhh
Confidence 999999999999999999999999999988877776544221 00 0100 111 11112
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHH
Q 007861 346 WASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEM 423 (587)
Q Consensus 346 ~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~ 423 (587)
....++.++++++.+++.++++.+++|+++++||||.+| ++|+|+|+|+++|++|++++++++.++.++++++.+..+
T Consensus 385 ~~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~l 464 (953)
T TIGR00930 385 PFPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPI 464 (953)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 356788999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCC
Q 007861 424 ISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRV 503 (587)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 503 (587)
.+.+++++|++++++.++.|++++...|
T Consensus 465 is~~fLl~Y~lvnla~~~l~~~~~p~~R---------------------------------------------------- 492 (953)
T TIGR00930 465 ISNFFLASYALINFSCFHASLLRSPGWR---------------------------------------------------- 492 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCC----------------------------------------------------
Confidence 9999999999999999988866532111
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhcccc
Q 007861 504 SHPTGWSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHS 558 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (587)
+. |+. +.++++.++++.|++++... .|....++++++++.|+++.+++
T Consensus 493 -P~--fk~-~~~~~sllG~l~c~~lmf~i---~w~~ali~~~i~~~ly~~~~~~~ 540 (953)
T TIGR00930 493 -PR--FKY-YHWWLSLLGASLCCAIMFLI---SWWAALVAMVIALFLYKYVTYKK 540 (953)
T ss_pred -Cc--ccc-chHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccC
Confidence 11 222 45678888888888877765 34555555566666565554443
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=4.4e-46 Score=396.82 Aligned_cols=441 Identities=17% Similarity=0.284 Sum_probs=322.3
Q ss_pred cccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHhhccccCCchhhhHHHHhchh
Q 007861 68 RKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISA-LLSSLCYTEFSVQIPVAGGAFSYLRVTFGEF 146 (587)
Q Consensus 68 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~ 146 (587)
||++.+++.++.+..+.+.. ..+.. +..|+..++.|++++++. ++.+++++|+++++|++||.|.|+++.+|+.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~~~---a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLPAE---AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cchHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 56999999999988876532 22222 247888999999999876 5799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007861 147 VGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILN 226 (587)
Q Consensus 147 ~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~ 226 (587)
+||.++|.+|+++.+..+......+..+....+.. .. .+..+.+......+.++++++.+.+|++|+|..+|++
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~ 149 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEA---TV---DESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVA 149 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cc---CcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 99999999999998766554433333332221100 00 0111111111123455566677889999999999999
Q ss_pred HHHHHH-HHHHHHHHHhhhccc---ccccCcc-CCCCCCCc--chhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcc
Q 007861 227 LIMTIF-HVVFFGFIIIAGFCN---GSVQNLV-KPGGLAPF--GVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLP 299 (587)
Q Consensus 227 ~~~~~~-~i~~~~~~~i~~~~~---~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip 299 (587)
.+...+ +++.++++++.++.. .+..+.. +..+..|+ ++..+..+. ..+|+|.|+|.++.++||+|||+|++|
T Consensus 150 ~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a~E~knP~r~iP 228 (474)
T TIGR03813 150 KWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLAA-SIFLFYAGMEMNAVHVKDVDNPDKNYP 228 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHHH-HHHHHHhchhHhHHHHHhccCcccchh
Confidence 886554 344444444443321 1111110 00111121 233333222 457899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCcccccch----HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007861 300 LGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDAS----FSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLC 375 (587)
Q Consensus 300 ~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (587)
||+..+..+++++|++.++++....|+++...+++ +.+..+..+.++...++.+...++.+++.++++.+.+|++|
T Consensus 229 rAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~ 308 (474)
T TIGR03813 229 IAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGML 308 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888887654333 33444556777888888888888999999999999999999
Q ss_pred HhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh--------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007861 376 VIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF--------TELNIVLEMISISTLLVFYLVANALIYRRYVMI 447 (587)
Q Consensus 376 a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 447 (587)
++||||.+|++|+|+| |+|+|++|++++.+++.++.++ ..++.+.++.+...++.|++.+++.+++|+|++
T Consensus 309 a~ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~ 387 (474)
T TIGR03813 309 AVAKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQP 387 (474)
T ss_pred HHhhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999 8899999999998876544332 237888899999999999999999999999888
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHhhhhcccc--chhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHH
Q 007861 448 SNNPPSHTLLFLFLLSFCAICFSLSLKIQQQL--WGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLN 525 (587)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 525 (587)
+.+||||... +++ |.+++++.+++.+..++.++ |...+.+...+++
T Consensus 388 ~~~rpf~~p~-------------------g~~g~~~~~~~~~~~~~~~~~~~~~-P~~~~~~~~~~ny------------ 435 (474)
T TIGR03813 388 DRPRPYRIPG-------------------GLAGMWFIGGLGFVGSALAFVLSFI-PPSQIGTGSPTRY------------ 435 (474)
T ss_pred CCCCCeEecC-------------------CccchhHHHHHHHHHHHHHHheeEe-CCcccCCCchHHH------------
Confidence 8999998621 333 67899999999999999988 5545555544444
Q ss_pred HHHHhcCChHHHHHHHHHHHHHHHHhhhhcccc-chhhh
Q 007861 526 VFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHS-TYEAE 563 (587)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 563 (587)
+...+++..++..++|++++||+ ++++|
T Consensus 436 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (474)
T TIGR03813 436 ----------VGLLIGLAALFVTAPFLIYARRKPHWRDP 464 (474)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHhchhhcCc
Confidence 44456777777888888876554 24444
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=1.4e-44 Score=385.60 Aligned_cols=439 Identities=15% Similarity=0.188 Sum_probs=312.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHhhccc-cCCchhhhHHHHhc
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGIS-ALLSSLCYTEFSVQIP-VAGGAFSYLRVTFG 144 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g 144 (587)
+||++.+++.++.++.+.+ ++..+. .+ ..|.+.+..++++.++ .++.+++++||++++| ++||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~-~a--~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT-FA--TSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH-HH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5779999999999988763 343442 22 4788877778887776 6779999999999997 99999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
+++||+++|.+|+.+....+.........+...+. . ++...+.....+..++++++.+++|++|.|..++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~-~---------~~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~ 147 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILK-F---------PALNEDPIIKFIAALIIFWALAFSQFGGTKRTAK 147 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------chhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999998876554433222222222221 0 0011111112244556677888999999999999
Q ss_pred HHHHHHHHHHHH-HHHHHhhhccc---ccccCc-cCCCCCCCcc-hhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCc
Q 007861 225 LNLIMTIFHVVF-FGFIIIAGFCN---GSVQNL-VKPGGLAPFG-VKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSL 298 (587)
Q Consensus 225 ~~~~~~~~~i~~-~~~~~i~~~~~---~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~i 298 (587)
++.+.....++. ++++++.+... .+..+. .+.+++.|.. ..+.+..+...+|+|.|+|.+++++||+|||+|++
T Consensus 148 i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~ 227 (507)
T TIGR00910 148 IAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDY 227 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccc
Confidence 998866544433 33333333221 111111 1112232321 11234445556899999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHH----HHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007861 299 PLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSM----AFRNIG--WAWASNVVGAGASLGIVASLLVAMLGQAR 372 (587)
Q Consensus 299 p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 372 (587)
|||++.+.+++.++|.+..+++....|++++...++..+ .....+ .++...++.+..+++.+++.++++.+.+|
T Consensus 228 PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR 307 (507)
T TIGR00910 228 PLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSR 307 (507)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998888888888887765433332 233333 25677788888899999999999999999
Q ss_pred HHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 373 YLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF---------TELNIVLEMISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 373 ~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 443 (587)
+++++||||.+|++|+|+| |+++|++|++++++++.++.++ ..++.+.++.+...++.|++..++++++|
T Consensus 308 ~l~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr 386 (507)
T TIGR00910 308 GMFAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLI 386 (507)
T ss_pred HHHHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 8899999999999988765432 13566777888999999999999999999
Q ss_pred hhccCCCCCchhHHHHHHHHHHHHHHHHhhhhcccc--chhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHH
Q 007861 444 YVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQL--WGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAIS 521 (587)
Q Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 521 (587)
+|+++.+||+|.+. +++ +.++++++++.++..++.+++|. .+.....+ ++...
T Consensus 387 ~k~p~~~rpf~~pg-------------------~~~~~~i~~~~~~~~~~~~~v~~~~Pp~-~~~~~~~~---~y~~~-- 441 (507)
T TIGR00910 387 LKHPDLKRTFNIPG-------------------GIGGKLIIAGIGFLLSIFAFFISFLPPA-NIAGDETD---MYQEI-- 441 (507)
T ss_pred HhcCCCCCCeEecC-------------------CccchhhHHHHHHHHHHHHHheeeeCCC-ccCCCchH---HHHHH--
Confidence 99999999998631 222 57888888888888888888443 33333222 22110
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhccccch
Q 007861 522 IFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHSTY 560 (587)
Q Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (587)
.......+.+++.++|..++||+|+
T Consensus 442 --------------~~~~~~~~~~~~~~~y~~~~~~~~~ 466 (507)
T TIGR00910 442 --------------LLISFLVTAALPFIIYALHDKKGHA 466 (507)
T ss_pred --------------HHHHHHHHHHHHHHHHHHhcccccC
Confidence 0011244456677778777777644
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=3e-43 Score=371.75 Aligned_cols=364 Identities=29% Similarity=0.551 Sum_probs=310.6
Q ss_pred cChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHhhccccCCchhhhHHHHhchhHH
Q 007861 70 LMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISA-LLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVG 148 (587)
Q Consensus 70 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 148 (587)
+|+++.++++++.++|+|++..+ .. ..+|+..++++++++++. ++.+++++|+++++|++||.|.|+++.+||++|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~-~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AA-ASAGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HH-TCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58899999999999999999877 33 348888999999999888 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 007861 149 YFAGANILMEYVLSNAAVARSFTDYLCHAVGE-NDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNL 227 (587)
Q Consensus 149 ~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~ 227 (587)
+.++|.+++.+....+.....+.+++...++. ..+++| ...++++++++....+|++|.|..+|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~i~~~~~~~~~~l~~~g~~~~~~~~~ 145 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPW------------PQFLIAIILILLFTLLNLLGIKLSGKIQN 145 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHH------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccccccc------------hheeeeecccccceEeeechhhhhhhhhh
Confidence 99999999999999999998899998776651 011111 13467888888999999999999999999
Q ss_pred HHHHHHH-HHHHHHHhhhcccccccCcc----CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHH
Q 007861 228 IMTIFHV-VFFGFIIIAGFCNGSVQNLV----KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGI 302 (587)
Q Consensus 228 ~~~~~~i-~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai 302 (587)
+.+.+++ ..++++++.++...+.+... ..+...+.++.+++.++..++|+|.|+|..++++||.|| ||+||++
T Consensus 146 ~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai 223 (426)
T PF13520_consen 146 ILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAI 223 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHH
T ss_pred hhhhhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeec
Confidence 9999999 56666666666654432222 112344556666889999999999999999999999877 8999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCcccccc----hHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 007861 303 VGSVLIVSLLYSLMALSLCLMVPYNKILKDA----SFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIG 378 (587)
Q Consensus 303 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a 378 (587)
..+.+++.++|++..++.....|+++.+..+ +....++..+++++..++.+...++.+++.++.+.+.+|+++++|
T Consensus 224 ~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 224 IISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhcccccc
Confidence 9999999999999999999999988776532 466777788778999999999999999999999999999999999
Q ss_pred hcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 007861 379 RARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF------TELNIVLEMISISTLLVFYLVANALIYRRYVMISNNP 451 (587)
Q Consensus 379 ~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 451 (587)
|||.+|++|+|+| |+|+|++|+++.++++.++.++ .+++.+.++.++.....|.+..++.++.|+|+++++|
T Consensus 304 ~d~~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 304 RDGVLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp HTTSSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred cccchhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999999 9999999999999999666532 2678999999999999999999999999999888766
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=363.87 Aligned_cols=383 Identities=32% Similarity=0.506 Sum_probs=325.1
Q ss_pred CCcccccccChhH-HHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 62 SGADMKRKLMWYD-LVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 62 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
++++++|+++.++ ...+..+.++|.|++..++..... + +...++|++++++..+.+++++|+++++|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4455778999999 889999999999999999888744 3 555555999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhh
Q 007861 141 VTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTK 220 (587)
Q Consensus 141 ~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k 220 (587)
+.+|++.|+.++|.+++++....+........++...++... .+ ..+......+++++.++..++|++|+|
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------~~~~~~~~~~~~~~~~~~~~ln~~G~~ 154 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--LL-------SIGPLLIILIALALIALLTLLNLRGIK 154 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--hh-------cCCchHHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999998888877211 00 000012347888889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCC--CcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCc
Q 007861 221 ESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLA--PFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSL 298 (587)
Q Consensus 221 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~i 298 (587)
..++++.+...++++.++++.+.++.+.+.++........ .....+++.++...+|+|.|+|.+++++||+|||+|++
T Consensus 155 ~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~i 234 (466)
T COG0531 155 ASAKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTI 234 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccc
Confidence 9999999999999999999888887766554321111111 12344688889999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccCCccccc---chHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007861 299 PLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKD---ASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLC 375 (587)
Q Consensus 299 p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (587)
||+++.+.+.++++|++..++.....+.+++... .|+...++...+.++..++.+..+.+++++.+++..+.+|.++
T Consensus 235 p~aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~ 314 (466)
T COG0531 235 PRAIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLY 314 (466)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887655433 6888888877778999999999999999999999999999999
Q ss_pred HhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHH-HHHhhh----cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 007861 376 VIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTA-SIALFT----ELNIVLEMISISTLLVFYLVANALIYRRYVMISNN 450 (587)
Q Consensus 376 a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~-~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 450 (587)
+++|||.+|++++|+|+|+++|+++++++.+++. +..... .++.+.++.+...++.|.+..++.+..|+|+++.+
T Consensus 315 ~~ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~ 394 (466)
T COG0531 315 AMARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLK 394 (466)
T ss_pred HHHhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Confidence 9999999999999999999999999999999998 333322 36899999999999999999999999999877777
Q ss_pred CCchh
Q 007861 451 PPSHT 455 (587)
Q Consensus 451 ~~~~~ 455 (587)
|+++.
T Consensus 395 ~~~~~ 399 (466)
T COG0531 395 RPFRL 399 (466)
T ss_pred Ccccc
Confidence 76653
No 35
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=4.7e-41 Score=359.72 Aligned_cols=406 Identities=17% Similarity=0.280 Sum_probs=287.7
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHhhcccc-CCchhhhHHHHh
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGIS-ALLSSLCYTEFSVQIPV-AGGAFSYLRVTF 143 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~ael~s~~P~-~GG~y~~~~~~~ 143 (587)
++|++|++++.++.++.++|.+.. +.... .+|+..++.+++++++ .++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~-~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFY-LMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHH-HcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 468899999999999999986532 22232 3788876777776655 67899999999999997 899999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSF-TDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
||++||+++|.+|.+++.......... .......++....+.|+.. +.. .......++++.+++.+.+|.+|+|..
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~ 157 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL--GLN-STQVVGILAVIWMILVTFVASKGINKI 157 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh--ccc-chHHHHHHHHHHHHHHHHHHccchHHH
Confidence 999999999999888887654433221 1122222332222222211 110 011112445555567889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh----hcccc-ccc------CccCC-CCCCCcchhHHHHHHHHHHHhccchhhhhchhHh
Q 007861 223 SILNLIMTIFHVVFFGFIIIA----GFCNG-SVQ------NLVKP-GGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEE 290 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~----~~~~~-~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E 290 (587)
+|++++.+..++...+++++. .+... +.. ++.+. ++..+.+ .+++.++..+.|+|.|+|..++++||
T Consensus 158 ~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~f~G~e~~~~~a~E 236 (496)
T PRK15238 158 AKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSP-IAVLSFVVFAIFAYGGIEAVGGLVDK 236 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccc-hHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 999998877765443211111 11111 111 11100 0101111 34777788899999999999999999
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccccc-------chHHHHHHHh-----------------ChhH
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKD-------ASFSMAFRNI-----------------GWAW 346 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-----------------~~~~ 346 (587)
+|||+|++||++..+...+.++|++..+.+....|.++.... .|+. +.+.. .+.+
T Consensus 237 ~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~ 315 (496)
T PRK15238 237 TENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVW 315 (496)
T ss_pred ccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHH
Confidence 999999999999999999999999998887777776654321 1221 11211 1245
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh---h---c---H
Q 007861 347 ASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF---T---E---L 417 (587)
Q Consensus 347 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~---~---~---~ 417 (587)
+..++.+..+.+.+++.+++.++.+|.++..+|||.+||+|+|+| |+|+|++|++++++++.++... . . |
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f 394 (496)
T PRK15238 316 FARITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFF 394 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHH
Confidence 556778888999999999999999999999999999999999999 8999999999998877765433 1 1 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhcc-cc-chhhHHHHHHHHHHHH
Q 007861 418 NIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQ-QL-WGLPLFGGLMLIVTAF 495 (587)
Q Consensus 418 ~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~ 495 (587)
+.+.++.+...++.|++++++++++|+ +++.+||++.. ++ .+ +.++++.++++++...
T Consensus 395 ~~l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 454 (496)
T PRK15238 395 NILTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVF-------------------KTKKSTLIATIVVVLVVGFANV 454 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceec-------------------CCcceehhHHHHHHHHHHHHHH
Confidence 889999999999999999999998876 46677777541 12 13 5566777777777666
Q ss_pred HHhhcc
Q 007861 496 FHYSMS 501 (587)
Q Consensus 496 ~~~~~p 501 (587)
+.+..|
T Consensus 455 ~~~~~p 460 (496)
T PRK15238 455 FTIIQP 460 (496)
T ss_pred HheeCC
Confidence 666544
No 36
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=8.5e-44 Score=380.24 Aligned_cols=364 Identities=28% Similarity=0.478 Sum_probs=304.0
Q ss_pred HHHHhhcccccccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHHHH
Q 007861 75 LVALGVGGMLGVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGA 153 (587)
Q Consensus 75 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~ 153 (587)
+.+++++.++|+|+|...+..... +|+ +.++++++++++.++++.+++|+++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 346788999999999999998866 777 689999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 007861 154 NILMEYVLSNAAVARSFTDYLCHA--VGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTI 231 (587)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~ 231 (587)
.||+.++...+......+.+++.. ++... ..|.. ..+++.++.++...+|++|+|..++++.++..
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~ 148 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLP-STWVW-----------GILIAIIFILLITLLNLFGVRVSGKIEFILTI 148 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhcccccccccc-ccccc-----------cchhhhhhhhhhhhhhhhhhhccchHHHHHHH
Confidence 999999999999988887777655 22111 01210 11356777888899999999999999999999
Q ss_pred HHHHHHHHHHhhh-cc-cc--cccC---ccCCCC---CCCc--------chhHHHHHHHHHHHhccchhhhhchhHhhcC
Q 007861 232 FHVVFFGFIIIAG-FC-NG--SVQN---LVKPGG---LAPF--------GVKGIVDGAATVYFSYIGYDSVSTLAEEIQN 293 (587)
Q Consensus 232 ~~i~~~~~~~i~~-~~-~~--~~~~---~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 293 (587)
++++.++.+++.+ +. .. +..+ +.++.. ..+. ++.+++.++..++++|.|+|..+.++||+||
T Consensus 149 i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~ 228 (478)
T PF00324_consen 149 IKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKN 228 (478)
T ss_pred HhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCC
Confidence 9999888887777 21 11 1111 111111 1222 3778999999999999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccccc------chHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHH
Q 007861 294 PSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKD------ASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAM 367 (587)
Q Consensus 294 p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 367 (587)
|+|++|||+..+++..+++|++..++.....|+++.... +|+..+.+..+++++..++.+..+.+.+++.++.+
T Consensus 229 P~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~ 308 (478)
T PF00324_consen 229 PRKTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASL 308 (478)
T ss_pred chhhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhh
Confidence 999999999999999999999999999998988875432 48888889999999999999999999999999999
Q ss_pred HhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhh------cHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 368 LGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFT------ELNIVLEMISISTLLVFYLVANALIY 441 (587)
Q Consensus 368 ~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~ 441 (587)
++.||++++|||||.+|+.+.+.|+|+|+|++|++++.+++++..+.. .++.+.++.++..+..|.+.+++.++
T Consensus 309 ~~~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~ 388 (478)
T PF00324_consen 309 YAASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIR 388 (478)
T ss_pred cccceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhh
Confidence 999999999999999996666667799999999999999888777642 35677888899999999999999998
Q ss_pred HhhhccCCCC
Q 007861 442 RRYVMISNNP 451 (587)
Q Consensus 442 ~r~~~~~~~~ 451 (587)
.|++.+.++|
T Consensus 389 ~r~~~~~~~~ 398 (478)
T PF00324_consen 389 FRKKFKYRGR 398 (478)
T ss_pred hhhhhccccc
Confidence 8777444433
No 37
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=2.8e-28 Score=253.25 Aligned_cols=342 Identities=15% Similarity=0.104 Sum_probs=266.5
Q ss_pred HHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHHHHHH
Q 007861 76 VALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANI 155 (587)
Q Consensus 76 ~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~ 155 (587)
.++.+++++|+|++..|+..... +++..++..+++++.+...+++++|+.+++|++||.|+|+++.+||..|++.+|.+
T Consensus 3 ~~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~ 81 (381)
T TIGR00837 3 ALIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSL 81 (381)
T ss_pred eEEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHH
Confidence 34677899999999999987633 55567777889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 007861 156 LMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVV 235 (587)
Q Consensus 156 ~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~ 235 (587)
++.......++....++++...++......+ + .....+++.+++..++++|.|..+|++.++...+++
T Consensus 82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~-------~-----~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~ 149 (381)
T TIGR00837 82 LFVLYILTYAYISGGGSILSRLIGEYFGFPW-------S-----ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKII 149 (381)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHhcCCCc-------c-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHH
Confidence 9999999999988888888887752111111 0 124566677788899999999999999999999999
Q ss_pred HHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHH
Q 007861 236 FFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSL 315 (587)
Q Consensus 236 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~ 315 (587)
.++++++.++.+.+.+++.+.. ..+.++.+++.++...+++|...+..+.+.+|.|+++|++||+++.+..+.+++|++
T Consensus 150 ~l~~~ii~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l 228 (381)
T TIGR00837 150 AFALVFSGLLPHVKGDLLLDVA-LDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYIL 228 (381)
T ss_pred HHHHHHHHHHhhccHHHHhcCc-cccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888887777666654221 112356678888888888884334688889999877899999999999999999999
Q ss_pred HHHHHhhcccCCcccc-------cchHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHH
Q 007861 316 MALSLCLMVPYNKILK-------DASFSMAFR-NIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWL 387 (587)
Q Consensus 316 ~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~ 387 (587)
..++..+..|.+++.+ .+++.+.++ ..++++...++.+...+++.++.+++..+.++. +++.+
T Consensus 229 ~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~ 299 (381)
T TIGR00837 229 WQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLF 299 (381)
T ss_pred HHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHh
Confidence 9999999999888652 135555665 457778889999999999999999888777743 44556
Q ss_pred hhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 388 AKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIY 441 (587)
Q Consensus 388 ~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 441 (587)
++.++|.+ |..+.+++.+...++..+.+...+..+...+....++...+..+.
T Consensus 300 ~~~~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~ 352 (381)
T TIGR00837 300 KFDDSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALL 352 (381)
T ss_pred CCCcccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554444 677888888888888877665666666666655555555554433
No 38
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.94 E-value=5.5e-26 Score=230.85 Aligned_cols=399 Identities=18% Similarity=0.203 Sum_probs=299.7
Q ss_pred ccChhHHHHHhh-cccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccc-cCCchhhhHHHHhch
Q 007861 69 KLMWYDLVALGV-GGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIP-VAGGAFSYLRVTFGE 145 (587)
Q Consensus 69 ~l~~~~~~~~~~-~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g~ 145 (587)
+++.++..+.-. -+|...=+|...|.+.++ +|.. .+.-++++-.+.+++.++...+++.-- +.||.|..++|.+|+
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 677776644422 233444567778888766 6665 777778888888888999999999877 788999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSIL 225 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~ 225 (587)
.+|--.|..+.+++++.++.++.++.+-+...++ .+.+.-. ....+|.++++..+...++...+..+++.|....+|.
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG-~~a~g~s-g~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAka 222 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFG-KEAQGAS-GSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKA 222 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcC-ccccCCc-ccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhh
Confidence 9999999999999999999999999999988887 2222211 1123566666666778888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCcc---------CC-----------------------CCCCCcchhHHHHHHHH
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGSVQNLV---------KP-----------------------GGLAPFGVKGIVDGAAT 273 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~-----------------------~~~~~~~~~~~~~~~~~ 273 (587)
..+......+.++.+.+..+....+++.. +. ......+..++-..+..
T Consensus 223 s~i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV 302 (945)
T KOG1288|consen 223 SNILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGV 302 (945)
T ss_pred hhhhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhhee
Confidence 88887776666665555554433322211 00 00111122335555666
Q ss_pred HHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHH
Q 007861 274 VYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGA 353 (587)
Q Consensus 274 ~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 353 (587)
.+-+-+|.-+.++|++|.|+|.|++||+.+.++....+.|++..+++....|+..+..+-. +++... ....++.+
T Consensus 303 ~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~---v~~~is--l~p~fi~i 377 (945)
T KOG1288|consen 303 FFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYD---VMMHIS--LHPPFILI 377 (945)
T ss_pred eeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchh---heeecc--ccchHHHH
Confidence 6778899999999999999999999999999999999999999999998888776655421 222221 23355666
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH
Q 007861 354 GASLGIVASLLVAMLGQARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLV 431 (587)
Q Consensus 354 ~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (587)
+++.+.+.+..+.+.+++|++.++|||+.+| ..|+|...+.+.|+.|+.++.+++-+..+.+++|.+..+.++.++++
T Consensus 378 Gi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlt 457 (945)
T KOG1288|consen 378 GILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLT 457 (945)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777778888899999999999999999999 67888888899999999999999998888899999999999999999
Q ss_pred HHHHHHHHHHHhhh-ccCCCCCchhHHHHHHHHHHHHHHHHhhhh
Q 007861 432 FYLVANALIYRRYV-MISNNPPSHTLLFLFLLSFCAICFSLSLKI 475 (587)
Q Consensus 432 ~~~~~~~~~~~r~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (587)
|..++++++.++.. .|+.++-||....=..++..+..+.+.+..
T Consensus 458 y~~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvV 502 (945)
T KOG1288|consen 458 YGAVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVV 502 (945)
T ss_pred HHHHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhhee
Confidence 99999998877765 455555566644434444444444444433
No 39
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=99.94 E-value=1.7e-25 Score=228.90 Aligned_cols=369 Identities=15% Similarity=0.173 Sum_probs=280.2
Q ss_pred ccChh-HHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccc-cCCchhhhHHHHhch
Q 007861 69 KLMWY-DLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIP-VAGGAFSYLRVTFGE 145 (587)
Q Consensus 69 ~l~~~-~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g~ 145 (587)
+++.+ ..+.=++..+.|.-.|...-.+.+. +|.. .++..++++.++++++.+++.+++.-- .+||.|...+|.+||
T Consensus 113 ~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsLGP 191 (1075)
T KOG2082|consen 113 RMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSLGP 191 (1075)
T ss_pred ccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEecccCc
Confidence 34433 3344466777888888888887755 7765 778888899999999999999999876 689999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHA-VGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
.+|-.+|.++.++..++.+.|..+..+.+..+ ++....-.-...-.+.....++..+.+.+++++..++...|+|.+.+
T Consensus 192 EFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~Vnk 271 (1075)
T KOG2082|consen 192 EFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFVNK 271 (1075)
T ss_pred cccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999977663 33110000000001123444556789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-c------------------ccC--------ccC----------------C-----
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCNG-S------------------VQN--------LVK----------------P----- 256 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~~-~------------------~~~--------~~~----------------~----- 256 (587)
+..++..+.++.++.+.+.++-.. + .++ ..+ .
T Consensus 272 ~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~~y 351 (1075)
T KOG2082|consen 272 FAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCDEY 351 (1075)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccccc
Confidence 999999998888877776654310 0 000 000 0
Q ss_pred -------------------------------CCCCC---------c---------c-hhHHHHHHHHHHHhccchhhhhc
Q 007861 257 -------------------------------GGLAP---------F---------G-VKGIVDGAATVYFSYIGYDSVST 286 (587)
Q Consensus 257 -------------------------------~~~~~---------~---------~-~~~~~~~~~~~~~~~~G~e~~~~ 286 (587)
+.+.+ + + -+.|..-+.+-+.+.+|+-+.++
T Consensus 352 ~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaGSN 431 (1075)
T KOG2082|consen 352 FSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAGSN 431 (1075)
T ss_pred cccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeecCC
Confidence 00000 0 0 01233334445668899999999
Q ss_pred hhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHH-----HhChhHHHHHHHHHHHHHHHH
Q 007861 287 LAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFR-----NIGWAWASNVVGAGASLGIVA 361 (587)
Q Consensus 287 ~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~~~ 361 (587)
.+++.|||+|++|.+.+.+.+....+|+...+.+..++....+.+. +-+... ..-..+-.+++.++.++|.++
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST~G 509 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLSTCG 509 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHHhH
Confidence 9999999999999999999999999999998888877763332221 000000 000123457888899999999
Q ss_pred HHHHHHHhhHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 362 SLLVAMLGQARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANAL 439 (587)
Q Consensus 362 ~~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 439 (587)
+.+-++.+++|++++.|||+.+| +.|+|.. ++|.|.+|++++.+++-...++++.+.+..+.+.++++.|.++++++
T Consensus 510 AgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNLaC 588 (1075)
T KOG2082|consen 510 AGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNLAC 588 (1075)
T ss_pred HHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhHHH
Confidence 99999999999999999999999 8999998 88999999999999999999999999999999999999999999976
Q ss_pred HH
Q 007861 440 IY 441 (587)
Q Consensus 440 ~~ 441 (587)
.+
T Consensus 589 av 590 (1075)
T KOG2082|consen 589 AV 590 (1075)
T ss_pred HH
Confidence 55
No 40
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.91 E-value=1.9e-21 Score=200.34 Aligned_cols=285 Identities=17% Similarity=0.194 Sum_probs=228.0
Q ss_pred ccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHH
Q 007861 69 KLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVG 148 (587)
Q Consensus 69 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 148 (587)
++|.+|..++.++.++|+|++..|+..... +|+++|++++++++..++.+++++|+++++|+. |.++|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 689999999999999999999999988754 888899999999999999999999999999976 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007861 149 YFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLI 228 (587)
Q Consensus 149 ~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~ 228 (587)
++.+|.+++......+......+++++..+. .+++. ..+.+.+++.+...+..|.|..+|++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~tp~---------------~~~~l~~l~~~~~~~~~Gi~~i~r~~~i 143 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLL-PRTPI---------------IVIIILIIIVSIYIVRKGIEVLLRTAEI 143 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCH---------------HHHHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 9999999988888887888888888876543 11111 2566777777888999999999999999
Q ss_pred HHHHHHHHH-HHHHhhhcccccccCccCCCCCCCcchhHHHHHHH-HHHHhccchhhhhchhHhhcCcCCCcchHHHHHH
Q 007861 229 MTIFHVVFF-GFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAA-TVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSV 306 (587)
Q Consensus 229 ~~~~~i~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~ 306 (587)
+...++... +++........+.+|.. |..+.|+.+.+.+.. ...++|.|+|......+|.||| |+.||++..+.
T Consensus 144 ~~~~~i~~~~~il~~~~~~~~~~~~l~---P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~ 219 (359)
T TIGR00912 144 LLIIFLILFILVLILLAPKLGNIKNLL---PVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAI 219 (359)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHcc---CccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHH
Confidence 998887763 44444334444455554 666777777788776 7889999999999999999997 56899999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChh-HHH---HHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007861 307 LIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWA-WAS---NVVGAGASLGIVASLLVAMLGQARYLC 375 (587)
Q Consensus 307 ~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~---~i~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (587)
.+++++|.+..++.....++++... ..|.....+....+ ... .++......+.+......++..++.+-
T Consensus 220 ~~~~~ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~ 293 (359)
T TIGR00912 220 IIGVLLYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLS 293 (359)
T ss_pred HHHHHHHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999898887765 46777777755433 322 344444455666666667777776543
No 41
>PHA02764 hypothetical protein; Provisional
Probab=99.87 E-value=1.6e-20 Score=175.81 Aligned_cols=281 Identities=19% Similarity=0.260 Sum_probs=184.1
Q ss_pred cCCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 61 RSGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 61 ~~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
|+.+++-|+.+.+|.++..++.+-+......+........|...+++|+++++++++.+++++|+++++|++||.|.|.+
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~Is~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYIS 84 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGISYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYIR 84 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEhH
Confidence 47788999999999999999887432211212222212356668999999999999999999999999999999999999
Q ss_pred HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhh
Q 007861 141 VTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTK 220 (587)
Q Consensus 141 ~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k 220 (587)
|++||.+|++.||..|+.+....++..-.-. ++ +. . .+... . ..-..-......+...|.|
T Consensus 85 RAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~--~~--~~-i-~~~~~------------~-f~~~~s~~~i~~~i~~~~~ 145 (399)
T PHA02764 85 TAFSSKFYTIFGISLWLTYVLSQPILGDLVL--LN--FN-I-QNQFE------------Q-FLIVESLFPIVLLIIANKK 145 (399)
T ss_pred HhhCccHHHHHHHHHHHHHHhhcchhhheee--ee--ee-e-HHHHH------------H-HHHHHHHHHHHHHHHcccH
Confidence 9999999999999999998887776542111 00 00 0 00000 0 1111122233444556788
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcch
Q 007861 221 ESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPL 300 (587)
Q Consensus 221 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ 300 (587)
..+|...++.....+ +. + +...+.-|+.. +.+. -+ .....++....-.|.-.|+....++|.||-+|+...
T Consensus 146 ~~~~~v~il~~a~~i-~a--i---f~~~~s~n~~~-~~f~-~s-nt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~ 216 (399)
T PHA02764 146 IYAKIVDILAIAQII-IA--I---FIAFKSFNFQY-QNFT-IS-NTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMI 216 (399)
T ss_pred HHHHHHHHHHHHHHH-HH--H---HhhccceeEEE-ccee-eh-HHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhh
Confidence 888887775554433 11 1 11111112210 0111 11 125556666777888899999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhc
Q 007861 301 GIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRA 380 (587)
Q Consensus 301 ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~d 380 (587)
+...+...+.++-+..+ +.+ + .+..+.+....++-+....--.||+.++|+.|
T Consensus 217 gyf~s~~~~~~~~ii~s--------y~n------~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd 269 (399)
T PHA02764 217 GYFVSYGIVAILSIIDS--------YSN------L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFD 269 (399)
T ss_pred hhHHHHHHHHHHHHHHh--------hhh------H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhh
Confidence 88888776665544433 100 0 11111233344555555556689999999999
Q ss_pred CCCchHHhhhcCCCCcch
Q 007861 381 RLVPTWLAKVHPSTGTPL 398 (587)
Q Consensus 381 g~lP~~~~~~~~~~~~P~ 398 (587)
+.+|+.|+|.|| ++|+
T Consensus 270 ~~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 270 KVLPEKFSKINP--NVLL 285 (399)
T ss_pred hhchHHHhccCC--Ccee
Confidence 999999999983 6887
No 42
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.86 E-value=5.5e-21 Score=193.65 Aligned_cols=367 Identities=17% Similarity=0.226 Sum_probs=287.6
Q ss_pred ccccChhHHHHHhh-cccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccc-cCCchhhhHHHHh
Q 007861 67 KRKLMWYDLVALGV-GGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIP-VAGGAFSYLRVTF 143 (587)
Q Consensus 67 ~r~l~~~~~~~~~~-~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~ 143 (587)
+-++++|+..+..+ -++-|.-+|...+.+.++ +|-+ .++...++.+++.+++++..-++++-. ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 34689999887754 455677888899988866 8876 788888899999999999999999887 8999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
|+..|-..|..|.+++....+.+..++++.+..++... ..+. ++-++.+..+++..+|..|+++..
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~--s~~~------------i~gi~~vt~~ill~i~~ag~~w~~ 171 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETE--SKEM------------IDGIGSVTVLILLAINVAGVEWEA 171 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhc--cHHH------------hcchhHHHHHHHHHhhhccchhHH
Confidence 99999999999999999999999999999999998722 2222 234778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccc-c----cC-----cc-CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCNGS-V----QN-----LV-KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~~~-~----~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
|.+.++..+.++.+.-+.+..+...+ . .. +. +..+-...+ ..++..+...+.+.+|+-+..+++++.|
T Consensus 172 k~q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~-~tfF~vf~vfFpaatgilaG~nisGdL~ 250 (643)
T KOG2083|consen 172 KLQIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPG-YTFFSVFAVFFPAATGILAGANISGDLK 250 (643)
T ss_pred HHHHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCC-CceEeeeeeecchhhhhhccccccCCCC
Confidence 99999988888877766666554321 1 01 11 001111111 2366666667788999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-----cc----hHHHHHHHhC-hhHHHHHHHHHHHHHHHHH
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-----DA----SFSMAFRNIG-WAWASNVVGAGASLGIVAS 362 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~ 362 (587)
+|++++|++.+.+....+.+|+....-.....-++.... .. .+.+-++... ..........+...+...+
T Consensus 251 ~Pq~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSs 330 (643)
T KOG2083|consen 251 DPQKAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSS 330 (643)
T ss_pred CchhhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHH
Confidence 999999999999999999999887766655443333221 11 2222222111 1233455666777788888
Q ss_pred HHHHHHhhHHHHHHhhhcCCCc--hHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 363 LLVAMLGQARYLCVIGRARLVP--TWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALI 440 (587)
Q Consensus 363 ~~~~~~~~sR~l~a~a~dg~lP--~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 440 (587)
.++.+..++++++++.+|...| .++.|-.+|++.|.++..++...+......++.+.+..+.+...+.+|.++..+.+
T Consensus 331 alsslVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f 410 (643)
T KOG2083|consen 331 ALSSLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCF 410 (643)
T ss_pred HHHHHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhh
Confidence 8999999999999999999999 68889899999999999999999999999999999999999999999999999988
Q ss_pred HHhhhccCC
Q 007861 441 YRRYVMISN 449 (587)
Q Consensus 441 ~~r~~~~~~ 449 (587)
..+....+.
T Consensus 411 ~aSl~~s~~ 419 (643)
T KOG2083|consen 411 HASLAISEG 419 (643)
T ss_pred hhhhccccc
Confidence 766665443
No 43
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.86 E-value=2.4e-18 Score=177.04 Aligned_cols=361 Identities=19% Similarity=0.176 Sum_probs=270.3
Q ss_pred cccChhHHHHHhhcccccccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchh
Q 007861 68 RKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEF 146 (587)
Q Consensus 68 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~ 146 (587)
|+-+.+...++.+|+.+|.|++..|-... .+|- ...+..++++.++...++.++|...+.|+..+.-+.+++.+|+.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~--~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATA--GAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 34567888999999999999999997765 3564 47888888999999999999999999999888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHH
Q 007861 147 VGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILN 226 (587)
Q Consensus 147 ~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~ 226 (587)
++++.+..|.+.......+|..+.++.+.+.++.....++. .....+++.+++..+.+.|.|...|++
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~------------~~~~~~~f~~i~~~iv~~g~~~v~~~n 146 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS------------PWLSSLLFTIIFGGIVYFGTKAVDRIN 146 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc------------HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999998632211111 124556667777788899999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHH
Q 007861 227 LIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSV 306 (587)
Q Consensus 227 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~ 306 (587)
..+...+++.++.+.+.++.+.+.++..... ..+..+...+.+++..+++|.-+...+.+.+..++-+|+++|++..+.
T Consensus 147 ~~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~-~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs 225 (394)
T PF03222_consen 147 RVLVFGMIISFIILVVYLIPHWNPSNLLDAP-PSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGS 225 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcCHHHhhccc-cccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHH
Confidence 9999999999999999999998887776422 124557778899999999999999999999999977889999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCccc----cc---chHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 007861 307 LIVSLLYSLMALSLCLMVPYNKIL----KD---ASFSMAFR-NIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIG 378 (587)
Q Consensus 307 ~~~~v~y~~~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a 378 (587)
.+..++|++...++.+..|+++.. ++ +++....+ ..++++...+..+...++..++..+...+..+.+...
T Consensus 226 ~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~- 304 (394)
T PF03222_consen 226 LIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADL- 304 (394)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 999999999999999988887643 22 23333443 5567888888999999999999888888877765332
Q ss_pred hcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhccCCCCCchh
Q 007861 379 RARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFT--ELNIVLEMISISTLLVFYLVA-NALIYRRYVMISNNPPSHT 455 (587)
Q Consensus 379 ~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~ 455 (587)
+++.|++.+. .....++.+...+++.+. .|-...+.......+.+.+.. +...+.|+++ ..++++.
T Consensus 305 --------~k~~~~~~~r-~~~~~ltf~ppl~~a~~~p~~F~~al~~aG~~~~il~~ilP~~m~~~~r~~~--~~~~~~~ 373 (394)
T PF03222_consen 305 --------FKLKNNSSGR-LKTWLLTFLPPLIFALLFPNGFLIALGYAGIGIAILLGILPALMVWKARKRK--PKQPYRV 373 (394)
T ss_pred --------HcCCccccch-HHHHHHHHHhHHHHHHHCcHHHHHHHHhhcHHHHHHHHHHHHHHHHHHHccc--CCCCeEE
Confidence 2222212222 223444555566666653 344444555433333333333 2333344333 3334553
No 44
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.83 E-value=3e-17 Score=166.15 Aligned_cols=344 Identities=13% Similarity=0.122 Sum_probs=251.2
Q ss_pred hhcccccccchhccHhhhhhhcCc-h-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHHHHHHH
Q 007861 79 GVGGMLGVGVFVTTGPVALQISGP-S-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANIL 156 (587)
Q Consensus 79 ~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~ 156 (587)
.++.-+|.|.+..|.....+.+.. . +.++|+++++..-+.+++ +.|++||.|++.++..||..|++.+|..+
T Consensus 4 lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 4 LFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 345557889999998887663333 2 678999999988887777 88999999999999999999999999877
Q ss_pred HHHHHH-----HHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 007861 157 MEYVLS-----NAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTI 231 (587)
Q Consensus 157 l~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~ 231 (587)
+..-.. .++.+...+ +...++.. .. .....+..+++..+..++++++.|...+++++++.
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~~~---~~----------~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLHSP---TS----------LLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccCcc---cc----------hHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 554322 222222222 33333310 00 00122455666667777999999999999999999
Q ss_pred HHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhcc-------chhhhhchhH-hhcCcCCCcchHHH
Q 007861 232 FHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYI-------GYDSVSTLAE-EIQNPSKSLPLGIV 303 (587)
Q Consensus 232 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------G~e~~~~~~~-E~k~p~r~ip~ai~ 303 (587)
++++.++++++.++.+...+...+..+..+ + ..+..++.-..+.+. |+-....+.+ |.|||+|+.|+.+.
T Consensus 143 ~lLi~l~~lii~g~~~p~g~~~~~~~~~~~-~-~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~ 220 (378)
T TIGR00796 143 ALLVTLLALIIKALLWPAGPILAASGAYAS-Q-QAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIK 220 (378)
T ss_pred HHHHHHHHHHHHHHHcCCCCcCCccccccc-c-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999998887632211111112211 0 235566666667776 7777888888 99999999999999
Q ss_pred HHH-HHHHHHHHHHHHHHhhcccCCccc----ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 007861 304 GSV-LIVSLLYSLMALSLCLMVPYNKIL----KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIG 378 (587)
Q Consensus 304 ~~~-~~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a 378 (587)
.++ ......|+...++..+..+.++.. .++.+.++.+..-|+.+..++.+.+.++|+++.++...++++
T Consensus 221 ~G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~------ 294 (378)
T TIGR00796 221 AGLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE------ 294 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 998 556666777777777776655433 234666777777789999999999999999999988888554
Q ss_pred hcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhccCCCCCchhH
Q 007861 379 RARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIY--RRYVMISNNPPSHTL 456 (587)
Q Consensus 379 ~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~ 456 (587)
+|+|.++| +|+++.++...+...+.....++.+.++..-...+.|=+.....++ .|++.++.+|++|..
T Consensus 295 -------~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~~ 365 (378)
T TIGR00796 295 -------YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQIT 365 (378)
T ss_pred -------HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeehH
Confidence 57777654 9999999888887777777889999998887777777776666555 777777789999986
Q ss_pred HHHH
Q 007861 457 LFLF 460 (587)
Q Consensus 457 ~~~~ 460 (587)
....
T Consensus 366 ~~~~ 369 (378)
T TIGR00796 366 LIVA 369 (378)
T ss_pred HHHH
Confidence 5443
No 45
>PRK10483 tryptophan permease; Provisional
Probab=99.83 E-value=1.3e-17 Score=169.65 Aligned_cols=338 Identities=15% Similarity=0.078 Sum_probs=256.6
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhc
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFG 144 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g 144 (587)
.|++.+.+...++..|+.+|.|++..|-... ..|- .+....++.++++...++.+.|...++|+.-+.-+.+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a--~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMS--GAWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 4567899999999999999999999987665 3454 378888999999999999999999999988889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
|.+..+.+..+.+-......+|..+.++.++..++.. .+. +| ....++++.+++..+.+.|.|..+|
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~---~~~--i~--------~~~~~llF~~~~~~iv~~gt~~vd~ 151 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM---SLN--VP--------ARAAGFGFALLVAFVVWLSTKAVSR 151 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc---CCC--Cc--------HHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 9999888888888888888999999999998888621 111 11 1256778888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHH
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVG 304 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~ 304 (587)
+|+++...+++.++..+.....+.+.++..+.....+..+...+.+++..+++|.-+..++.+.++.++-.|+++|++..
T Consensus 152 ~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~i 231 (414)
T PRK10483 152 MTAIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVY 231 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHH
Confidence 99999999999998888887787776666433211222245578899999999999999999999988655689999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCccc----ccch---HHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007861 305 SVLIVSLLYSLMALSLCLMVPYNKIL----KDAS---FSMAF-RNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCV 376 (587)
Q Consensus 305 ~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~---~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (587)
+..+..++|++...++.+..|+++.. +++. +.+.. +..+.++...+..+...++..+|..+...+....+..
T Consensus 232 Gs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D 311 (414)
T PRK10483 232 GTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLAD 311 (414)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999977642 2222 22222 3556677888888888888888887777776666544
Q ss_pred hhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 007861 377 IGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISIST 428 (587)
Q Consensus 377 ~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 428 (587)
.-+ +.+++.+.. ...+++.+...+++++.+-..+..+.-.+.
T Consensus 312 ~~k---------~~~~~~~r~-~~~~ltflPPl~~al~~P~~Fl~AL~yAG~ 353 (414)
T PRK10483 312 LFG---------FDDSAMGRF-KTALLTFLPPVVGGLLFPNGFLYAIGYAGL 353 (414)
T ss_pred HhC---------CCCccccce-eeehhhHhhHHHHHHHhHHHHHHHHHHHHH
Confidence 322 222112222 234457777888887755444444433333
No 46
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.82 E-value=6.5e-17 Score=164.41 Aligned_cols=343 Identities=13% Similarity=0.079 Sum_probs=253.7
Q ss_pred ChhHHHHHhhcccccccchhccHhhhhhhcCc-hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHH
Q 007861 71 MWYDLVALGVGGMLGVGVFVTTGPVALQISGP-SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGY 149 (587)
Q Consensus 71 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 149 (587)
+.+...++..|+++|.|++..|-... ..|- .+....++.++++...++.+.|...++|..-+.-+.+++.+|+.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a--~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLA--GAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 66668899999999999999997665 2454 47888889999999999999999999998888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007861 150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIM 229 (587)
Q Consensus 150 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~ 229 (587)
+.+..+.+-......+|..+.++.++..++... .+ +.+ .....+++.++...+.+.|.|...|.++++
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--~~--~i~--------~~~~~llF~~~~~~~v~~gt~~vd~~nr~l 155 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL--GY--HAN--------PRIVGICTAIFVASVLWISSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--cC--CCc--------HHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 888888888888889999999999998886210 11 111 124567888889999999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCccCCCCCCC--cchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHH
Q 007861 230 TIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAP--FGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVL 307 (587)
Q Consensus 230 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~ 307 (587)
...+++.++..+..+..+.+.++..+...... ..+...+.+++..+++|.-+..++.+....++-.|+.+|+++.+..
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~ 235 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSL 235 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHH
Confidence 99999998888888888888777653322111 1133477889999999999999999999988766789999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCccc----ccchHHH----HHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 007861 308 IVSLLYSLMALSLCLMVPYNKIL----KDASFSM----AFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGR 379 (587)
Q Consensus 308 ~~~v~y~~~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 379 (587)
+..++|++...++.+..|+++.. ++..... ..+...+++...+..+...++..+|..+...+....+...
T Consensus 236 IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~-- 313 (415)
T PRK09664 236 LALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADL-- 313 (415)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999999988877643 2222222 2234566788888888888888888777766665554432
Q ss_pred cCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH
Q 007861 380 ARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVAN 437 (587)
Q Consensus 380 dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 437 (587)
+++.+++.+. .....++.+...+++++.+-..+..+.-.+.........+
T Consensus 314 -------~~~~~~~~~r-~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~il 363 (415)
T PRK09664 314 -------FKIDNSHGGR-FKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVII 363 (415)
T ss_pred -------hCCCCccccc-eeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 2222212122 2234456777888887755444444444333333333333
No 47
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.80 E-value=2.3e-17 Score=169.35 Aligned_cols=289 Identities=15% Similarity=0.070 Sum_probs=220.7
Q ss_pred HHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHH----HHHHHhhcccc-CCchhhhHHHHhchhHHH
Q 007861 75 LVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSL----CYTEFSVQIPV-AGGAFSYLRVTFGEFVGY 149 (587)
Q Consensus 75 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~----~~ael~s~~P~-~GG~y~~~~~~~g~~~g~ 149 (587)
-....+++++|+|++..|.. +|...++.++++.+++++.++ .+.|.....|. +++.++++++.+||.+|.
T Consensus 8 w~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ 82 (397)
T TIGR00814 8 WMLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGI 82 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHH
Confidence 35667788899999999976 344456666666666555544 45555444443 668999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007861 150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIM 229 (587)
Q Consensus 150 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~ 229 (587)
+.++.|++.......+++...++.+.+.+..... . +.+. ..+.++++++....++..|.|...|++.++
T Consensus 83 ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~----~---~~p~----~~i~~lilv~il~~iv~~G~~~i~r~~~il 151 (397)
T TIGR00814 83 LITLLYFFAIYPILLIYSVAITNDSASFLVNQLG----T---APPL----RGLLSLALILILVAIMSFGEKLLFKIMGPL 151 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----C---CCcH----HHHHHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 9999999999999888888877777666531100 0 0000 114566677777899999999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchh----HhhcCc---CCCcchHH
Q 007861 230 TIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLA----EEIQNP---SKSLPLGI 302 (587)
Q Consensus 230 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~----~E~k~p---~r~ip~ai 302 (587)
...+++.++.+.+..+.+.+.++.... +.....+..++.+++..+|+|.|+|..++++ +|.+|| +|+..|++
T Consensus 152 ~~~~ii~l~~l~~~lip~~~~~~L~~~-p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i 230 (397)
T TIGR00814 152 VFPLVLILVLLSLYLIPHWNGANLTTF-PSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIM 230 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCHHHHhcC-CcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHH
Confidence 999999998888888888888777532 2222346779999999999999999999998 666644 46788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCcccc----c-chHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 007861 303 VGSVLIVSLLYSLMALSLCLMVPYNKILK----D-ASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVI 377 (587)
Q Consensus 303 ~~~~~~~~v~y~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (587)
..+..+..++|+...+...+..++++..+ + +.+....+....++...+..+...++..++..+...+....+..+
T Consensus 231 ~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l 310 (397)
T TIGR00814 231 KGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGI 310 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 99999999999999999999988887542 2 233444457777888888888888888889888888888877776
Q ss_pred hhc
Q 007861 378 GRA 380 (587)
Q Consensus 378 a~d 380 (587)
-++
T Consensus 311 ~~~ 313 (397)
T TIGR00814 311 VLN 313 (397)
T ss_pred HHH
Confidence 643
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.79 E-value=8.4e-16 Score=157.40 Aligned_cols=347 Identities=16% Similarity=0.146 Sum_probs=255.5
Q ss_pred ChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHH
Q 007861 71 MWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGY 149 (587)
Q Consensus 71 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 149 (587)
+.+...++.+|+.+|.|++..|-... .+|.. .....++++.++...++.++|...+.|...+.-+.+++.+|+..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~--~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAA--GVGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 55677888999999999999997765 35654 7777788888888999999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007861 150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIM 229 (587)
Q Consensus 150 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~ 229 (587)
+.+..|++.......+|..+.++.+.+.++..-. . + .+ .....+.+.++...+.+.|.|...|++.++
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~--~--~---i~-----~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L 149 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTG--I--S---MS-----PTAGVLLFTLVAGGVVCVGTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc--C--C---CC-----hHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999977777666541000 0 0 00 114556666667778888999999999999
Q ss_pred HHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHH
Q 007861 230 TIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIV 309 (587)
Q Consensus 230 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~ 309 (587)
...+++.++.+....+.+.+.+++.+.+ +. ....+.+++..+++|.-+..++.+....++-+|+++|++..+..+.
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~L~~~~-~~---~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~ 225 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVNLLTLP-LQ---QGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIP 225 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHhcCC-cc---ccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHH
Confidence 9999998888888888888877775321 11 1237889999999999999999999999887788999999999999
Q ss_pred HHHHHHHHHHHhhcccCCccc----ccc---hH-HHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC
Q 007861 310 SLLYSLMALSLCLMVPYNKIL----KDA---SF-SMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRAR 381 (587)
Q Consensus 310 ~v~y~~~~~~~~~~~~~~~~~----~~~---~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 381 (587)
.++|++...++.+..|+++.. ++. +. ....+..+.++...+..+...++..+|..+...+..+.+..+-+.
T Consensus 226 li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~- 304 (403)
T PRK15132 226 LVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR- 304 (403)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-
Confidence 999999999999999987643 222 33 333446677888889999988899988888888877776654322
Q ss_pred CCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHH-HHHHHHHHHHHHHHhhh
Q 007861 382 LVPTWLAKVHPSTGTPLNATLFLGLCTASIALFT--ELNIVLEMISIST-LLVFYLVANALIYRRYV 445 (587)
Q Consensus 382 ~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~--~~~~l~~~~~~~~-~~~~~~~~~~~~~~r~~ 445 (587)
.+++.+ -.....++.+...+++.+. .|....+.+.... ...+.++.....+.|++
T Consensus 305 --------~~~~~~-r~~~~~l~flppli~a~~~P~~F~~al~~aG~~~ail~~ilP~~m~~~~r~~ 362 (403)
T PRK15132 305 --------RNTVGG-RLQTGLITFLPPLAFALFYPRGFVMALGYAGVALAVLALLLPSLLVWQSRKQ 362 (403)
T ss_pred --------CccccC-CchhehhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 111111 1223445566666666663 3444444444332 23333444444444443
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.75 E-value=4.8e-15 Score=153.75 Aligned_cols=287 Identities=18% Similarity=0.114 Sum_probs=228.8
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCC-chhhhHHHHh
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAG-GAFSYLRVTF 143 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~ 143 (587)
.+++-+..+.....+++.+|.|++..|-... .+|-. .+...++++.++....+++.|...+.|+.. +.++-+++.+
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~--~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~ 82 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFG--GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYL 82 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhc--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHh
Confidence 4566788888999999999999999986654 35554 778888899999999999999999999884 8999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC-CCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDP-NSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
||.++++.+..+.+.......+|....++.+...++..-. +.+. ..+..+++...+..+...|.+..
T Consensus 83 G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~------------r~~~~lif~~~~~~l~~~~~~~~ 150 (415)
T COG0814 83 GKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLP------------RKLGSLIFALVLAFLSWLGTLAV 150 (415)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcc------------hHHHHHHHHHHHHHHHHhchhHH
Confidence 9999999999999999999999999999999988862111 1011 22566777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCC-cchH
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKS-LPLG 301 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~-ip~a 301 (587)
.|.+..+...+++.++++.....++.+.++....+...+..+..++.+++.++++|.++...+.+..|.|+++++ ++|+
T Consensus 151 lk~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~ 230 (415)
T COG0814 151 LKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKA 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHH
Confidence 999999999999999999988888877666543211113446678999999999999999999999999988877 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCccc-------ccchHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHH
Q 007861 302 IVGSVLIVSLLYSLMALSLCLMVPYNKIL-------KDASFSMAF-RNIGWAWASNVVGAGASLGIVASLLVA 366 (587)
Q Consensus 302 i~~~~~~~~v~y~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~ 366 (587)
+..+..+..++|+...+....+.+.+..+ ++.....+. +....+.......+..+.+..++..+.
T Consensus 231 ~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv 303 (415)
T COG0814 231 ILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGV 303 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999999999999988876432 122333333 344555566666666666665554433
No 50
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.75 E-value=6.5e-15 Score=149.87 Aligned_cols=292 Identities=13% Similarity=0.071 Sum_probs=230.5
Q ss_pred HHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhcc-ccCCchhhhHHHHhchhHHHHHHH
Q 007861 76 VALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQI-PVAGGAFSYLRVTFGEFVGYFAGA 153 (587)
Q Consensus 76 ~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~-P~~GG~y~~~~~~~g~~~g~~~g~ 153 (587)
....+|+.+|.|++.+|-... .+|.. ..+..++++.++...++.+.|..... |.+.+.-+-+++.+|+.+|.+.+.
T Consensus 25 ~l~l~GTAIGAGmLfLPI~~g--~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~i 102 (443)
T PRK13629 25 TLGLFGTAIGAGVLFFPIRAG--FGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF 102 (443)
T ss_pred HHHHHHHHHhHHHHHHHHHHh--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHH
Confidence 356778889999999997765 35654 77788888899999999999999998 555567789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 007861 154 NILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFH 233 (587)
Q Consensus 154 ~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~ 233 (587)
.|.+.......+|.....+.+.+.+... ... ++.+ ..+.++++.+++..+...|.|...|++.++...+
T Consensus 103 lYff~ly~ll~aY~~~itn~l~sfl~~q----l~~--~~~~-----r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~ 171 (443)
T PRK13629 103 LYFFAICPLLWIYGVTITNTFMTFWENQ----LGF--APLN-----RGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPF 171 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCc--CCcc-----HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999988888877653200 000 0000 1267888888999999999999999999999999
Q ss_pred HHHHHHHHhhhcccccccCccCCCC----CC-Ccc-hhHHHHHHHHHHHhccchhhhhchhHh----hc-----C-cCCC
Q 007861 234 VVFFGFIIIAGFCNGSVQNLVKPGG----LA-PFG-VKGIVDGAATVYFSYIGYDSVSTLAEE----IQ-----N-PSKS 297 (587)
Q Consensus 234 i~~~~~~~i~~~~~~~~~~~~~~~~----~~-~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E----~k-----~-p~r~ 297 (587)
++.++.+.+..+++.+.+++.+.+. .. ..+ ....+.+++..+++|.-+..++.++.. .+ | .+|+
T Consensus 172 i~~l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k 251 (443)
T PRK13629 172 IASLVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERK 251 (443)
T ss_pred HHHHHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHH
Confidence 9999999999999998877753221 00 111 234788899999999888888887766 42 2 2477
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhhcccCCccc----ccch-HHHHHHHhCh---------hHHHHHHHHHHHHHHHHHH
Q 007861 298 LPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL----KDAS-FSMAFRNIGW---------AWASNVVGAGASLGIVASL 363 (587)
Q Consensus 298 ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~ 363 (587)
..|++..+..+..++|++..+.+.+..++++.. ++.+ +....+..++ ++...+..+...++..++.
T Consensus 252 ~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSF 331 (443)
T PRK13629 252 CSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSF 331 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999999999988864 3445 6666666655 6788888888888999999
Q ss_pred HHHHHhhHHHHHHhhhc
Q 007861 364 LVAMLGQARYLCVIGRA 380 (587)
Q Consensus 364 ~~~~~~~sR~l~a~a~d 380 (587)
++...+....+..+.++
T Consensus 332 lGv~LGl~E~l~gl~~~ 348 (443)
T PRK13629 332 FGHYLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99988888888877753
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.66 E-value=1.3e-13 Score=139.62 Aligned_cols=285 Identities=17% Similarity=0.247 Sum_probs=233.7
Q ss_pred ccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHH
Q 007861 69 KLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVG 148 (587)
Q Consensus 69 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 148 (587)
|+|.+|...+.+..++|+++...|+..... +| ++|++.+++++..+..++.+..+.+++|+.. .+.+.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~~-l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGKT-LVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-HHHHHHHHhCcHHH
Confidence 578999999999999999999999998866 56 8999999999999999999999999999864 89999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHH
Q 007861 149 YFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLI 228 (587)
Q Consensus 149 ~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~ 228 (587)
.+.+..+.+.+....+.....+++.++..+- .+.+.| .+...+.+.+......|.+..+|.+.+
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~l-p~TP~~---------------~i~~~~ll~~~y~a~~G~e~i~R~~~~ 141 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLL-PETPIW---------------VIILLFLLVAAYAARKGIEVIARVAEI 141 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcCCHH---------------HHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999988764 222222 566777778889999999999998888
Q ss_pred HHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHH
Q 007861 229 MTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLI 308 (587)
Q Consensus 229 ~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~ 308 (587)
.....+...+.+........++++.. |..+.|+..++.+.....+.|.|.|....+...+||++ +..|....+...
T Consensus 142 ~~~~~~i~~~~i~~~~~~~~~~~~l~---P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~k~~~~~~~~ 217 (320)
T PF03845_consen 142 LFPIFLILLLLILLLSIPNIDWDNLL---PVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKK-KLKKSLLIAILI 217 (320)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHee---CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHH
Confidence 88888877777777777777777766 77788888899998889999999999999999999985 568999999999
Q ss_pred HHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChh-H---HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007861 309 VSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWA-W---ASNVVGAGASLGIVASLLVAMLGQARYLCV 376 (587)
Q Consensus 309 ~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (587)
++++|....+....+.+++.... .-|.....+....+ . ...++...-..+.+......++.+++.+..
T Consensus 218 ~~~~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~ 290 (320)
T PF03845_consen 218 SGLFLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQ 290 (320)
T ss_pred HHHHHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888776554 45776666644322 2 333444444555566666677777776544
No 52
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.35 E-value=9.5e-10 Score=113.47 Aligned_cols=351 Identities=13% Similarity=0.089 Sum_probs=215.1
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCc-----hhhhH
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGG-----AFSYL 139 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG-----~y~~~ 139 (587)
.+|+-++++..+-.++.++|.|+..+|-... ..|-. .+...++.+++++.++..+.+.-...|.-.| .-+-+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~--~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~ 111 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALA--QLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLG 111 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHH--hCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHH
Confidence 4677999999999999999999999984443 36764 4778888888888888888888888887667 66677
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHH-Hhh
Q 007861 140 RVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCL-CHG 218 (587)
Q Consensus 140 ~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g 218 (587)
++.||++.-.++++...+........+....++.+...++....+.-. ...+ ...+++.++..... +..
T Consensus 112 ~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~-------l~~~---~f~iif~~i~~~~s~lp~ 181 (437)
T KOG1303|consen 112 QAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNS-------LDKQ---YFIIIFGLIVLPLSQLPN 181 (437)
T ss_pred HHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-------ccce---ehhhhHHHHHHHHHHCCC
Confidence 889998887788888888888888888888999998887633221100 0000 11111111221111 333
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCcc--CCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCC
Q 007861 219 TKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLV--KPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSK 296 (587)
Q Consensus 219 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r 296 (587)
.....++.....+..+.........+..+.-..+.. ......+.+. .+.++....|+|.|+-....+-..+|+|++
T Consensus 182 ~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~--~f~a~g~iaFaf~gH~v~peIq~tMk~p~~ 259 (437)
T KOG1303|consen 182 FHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPT--VFTALGIIAFAYGGHAVLPEIQHTMKSPPK 259 (437)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcc--hhhhhhheeeeecCCeeeeehHhhcCCchh
Confidence 344444444444444444444444444443111111 0011111111 177888999999999999999999999977
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007861 297 SLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNI-GWAWASNVVGAGASLGIVASLLVAMLGQARYLC 375 (587)
Q Consensus 297 ~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (587)
++|+.+.+..+++.+|+..++.-+...+++..++ ..... ...|.....++.+.+-++++......-..-..-
T Consensus 260 -f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~------il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E 332 (437)
T KOG1303|consen 260 -FKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDN------ILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVE 332 (437)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHhhhhhhccccchh------hhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHH
Confidence 9999999999999999999988887777655432 22223 356777777777777777765433333222222
Q ss_pred HhhhcCCCchHHhhhcCCCCcchHHHHH---HHHHHHHHHhhhcHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Q 007861 376 VIGRARLVPTWLAKVHPSTGTPLNATLF---LGLCTASIALFTELNIVLEMISI--STLLVFYLVANALIYRR 443 (587)
Q Consensus 376 a~a~dg~lP~~~~~~~~~~~~P~~a~~~---~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~r 443 (587)
...++ -++.+.+ | ..+.+.++= ......+-..+..|+.+.++... ....++.++++.++..+
T Consensus 333 ~~~~~--~~~~~~~---~-~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~ 399 (437)
T KOG1303|consen 333 KLIGV--KHPDFKK---R-SLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIK 399 (437)
T ss_pred HHhcc--CCccccc---c-ccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22111 1111111 1 111121111 11111222223456666666543 45577888888877663
No 53
>PLN03074 auxin influx permease; Provisional
Probab=99.34 E-value=3.3e-09 Score=112.02 Aligned_cols=239 Identities=11% Similarity=0.088 Sum_probs=134.7
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHH----HHhhccccCCchh-----
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYT----EFSVQIPVAGGAF----- 136 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~a----el~s~~P~~GG~y----- 136 (587)
.+.-+..+...-.....+|.|++.+|-... .+|.. .++..++.++++...+..+. |...+.|+.+-.|
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af~--~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSFS--QLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHHH--HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 344566666666888889999999887655 46754 55566666666555555544 5666666644212
Q ss_pred hh---HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHH
Q 007861 137 SY---LRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTL 213 (587)
Q Consensus 137 ~~---~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (587)
.| .++.+||.++........+........+....++-+.......+...| ..+..++.+.+.
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~-------------~~i~~~v~~~~~-- 185 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW-------------TYIFGACCATTV-- 185 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE-------------EeehHHHHHHHH--
Confidence 22 344678888877755444444443333333323222222110111111 112222222222
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcC
Q 007861 214 CLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQN 293 (587)
Q Consensus 214 ~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~ 293 (587)
-....|..+++..+.....+.....+.+....+.+....... .+.++..++.++..++|+|.|+-....+-.|+||
T Consensus 186 -~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~---~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~ 261 (473)
T PLN03074 186 -FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHS---GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWK 261 (473)
T ss_pred -HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCC---CchhHHHHHHHHHHHHHHhcccccHHHHHHhccC
Confidence 234455555554444333332222223333333322222211 1234555777777899999999999999999999
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 007861 294 PSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYN 327 (587)
Q Consensus 294 p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~ 327 (587)
|+ ++++....+......+|+...+..+...+++
T Consensus 262 P~-~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 262 PQ-KFKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred hh-cccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 95 6999988888888888888777666666654
No 54
>PTZ00206 amino acid transporter; Provisional
Probab=99.33 E-value=2.9e-09 Score=113.02 Aligned_cols=248 Identities=15% Similarity=0.105 Sum_probs=153.2
Q ss_pred ChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHH
Q 007861 71 MWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGY 149 (587)
Q Consensus 71 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~ 149 (587)
|..+..+-.+.+++|.|++..|.... .+|.. ..+..++.++++......+.+.+.+ ++.-...+-+++.+|+..++
T Consensus 61 g~~~s~fnL~~~~iGaGILsLP~Af~--~~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~~ 137 (467)
T PTZ00206 61 GIAASAFNIASSTVGAGIVGLPSAAN--SSGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGSY 137 (467)
T ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHHH
Confidence 44566666777889999999887654 36654 5555555666666655666666555 33345666777789999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHH
Q 007861 150 FAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIM 229 (587)
Q Consensus 150 ~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~ 229 (587)
++.....+.....+.++....++.+...+.......+... ...+.. ....+.+.+.+-+...+.++..+++..+.
T Consensus 138 ~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~---~~~~r~--~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 138 YVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQ---KSGNRL--LTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhh---ccCcEE--eeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 9999999999999999999999988887752211111000 000000 01111111222233345566666665444
Q ss_pred HHHHHHHHHHHHhhhcccccccCccCC-------CC--CCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcC-CCcc
Q 007861 230 TIFHVVFFGFIIIAGFCNGSVQNLVKP-------GG--LAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPS-KSLP 299 (587)
Q Consensus 230 ~~~~i~~~~~~~i~~~~~~~~~~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-r~ip 299 (587)
....+...+.+++....+...++..+. .+ ..+. ....+.++...+|+|.++.....+-+|+|||. |+..
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNS-GNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecC-chHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 433333322222222222111111100 00 0111 12477889999999999999999999999864 6788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 007861 300 LGIVGSVLIVSLLYSLMALSLCLMVPYN 327 (587)
Q Consensus 300 ~ai~~~~~~~~v~y~~~~~~~~~~~~~~ 327 (587)
+.+..+..++.++|.+..+.-+...+++
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 9999999999999999988877766654
No 55
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.32 E-value=4.4e-09 Score=106.82 Aligned_cols=349 Identities=15% Similarity=0.118 Sum_probs=209.5
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch--HHHHHHHHHHHHHH---HHHHHHHHhhccccC---------
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS--VFISYIIAGISALL---SSLCYTEFSVQIPVA--------- 132 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~--~~~~~ll~~~~~~~---~a~~~ael~s~~P~~--------- 132 (587)
++..|..+.+.-.+-.++|+|++..|...- .+|.. .+...+++.+...+ ..-+--++.++.-.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk--~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFK--NSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHH--hcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 345788888888888899999998886544 36653 44444555555444 345556666664211
Q ss_pred ---CchhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHH
Q 007861 133 ---GGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVL 209 (587)
Q Consensus 133 ---GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (587)
.+.|-| .|.+|+...+++-....+.+...+..+....++-+.+......+..+... +...+.+.
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~------------~~i~~~~~ 188 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVR------------LYILIQLP 188 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHH------------HHHHHHHH
Confidence 122225 67889999999999999999999999999999988888873333333221 22222233
Q ss_pred HHH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchh
Q 007861 210 LLT-LCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLA 288 (587)
Q Consensus 210 ~~~-~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 288 (587)
... +...+..|+.+-+..+..++.++.++++..-.+.... +..+.+.+. ++.++...+..++|+|-|.-.+-.+=
T Consensus 189 ~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~~~--~~~~~~lf~GtaifafEGig~VLPlE 264 (449)
T KOG1304|consen 189 PLLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVLPLE 264 (449)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--Ccccccccc--chhhhHHHHHHHHHHhccceEEEehh
Confidence 333 3334456666666666666666655555544333322 222222332 36677788889999999999999999
Q ss_pred HhhcCcCCCcc---hHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 007861 289 EEIQNPSKSLP---LGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLV 365 (587)
Q Consensus 289 ~E~k~p~r~ip---~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 365 (587)
+++|+|+ ++| +.+..++.+++++|....+.-+...++|.-+.- .-.....++...+-+...++.+.+..-
T Consensus 265 n~Mk~P~-~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sI------TLNLP~~~l~~~Vkl~~ai~I~ls~pL 337 (449)
T KOG1304|consen 265 NSMKKPQ-KFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSI------TLNLPQEILSQTVKLLLAIAIFLTYPL 337 (449)
T ss_pred hcccChh-hcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceE------EecCCccHHHHHHHHHHHHHHHHcCch
Confidence 9999995 688 999999999999999988877776666543320 001222445555555666666666666
Q ss_pred HHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHh-hhcHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 007861 366 AMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIAL-FTELNIVLEMISIST--LLVFYLVANALIYR 442 (587)
Q Consensus 366 ~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~-~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~ 442 (587)
.++..-++++.- +.++++ .++++=.+..-=....+++..++. +.+++.++++..... .+.+.++..--+..
T Consensus 338 Q~yv~~eIi~~~-----i~~k~~-~~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~ 411 (449)
T KOG1304|consen 338 QFYVPIEIIEPG-----IRKKFS-ENRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELIT 411 (449)
T ss_pred hhhhhHHHHHHh-----HHHhcC-cchhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHH
Confidence 667777766553 222222 110000111111111122222222 467777777765444 45555555555554
Q ss_pred hhhcc
Q 007861 443 RYVMI 447 (587)
Q Consensus 443 r~~~~ 447 (587)
.+...
T Consensus 412 ~~~~~ 416 (449)
T KOG1304|consen 412 FYPEG 416 (449)
T ss_pred hcccc
Confidence 44443
No 56
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.24 E-value=2.3e-08 Score=101.90 Aligned_cols=295 Identities=14% Similarity=0.210 Sum_probs=181.9
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccc-------cCCchh
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIP-------VAGGAF 136 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P-------~~GG~y 136 (587)
++.++++|+++.++.+++..+|.|-......+... +||+++....+++++...+.++=.-|+-+|. ..||..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 34456899999999999999999988888887754 9998544444444454455555455555444 247899
Q ss_pred hhHHHHhchhH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHH
Q 007861 137 SYLRVTFGEFV-GYFAGANILMEYVLS-NAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLC 214 (587)
Q Consensus 137 ~~~~~~~g~~~-g~~~g~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (587)
+|.++.+|.++ +.+.+......+... ........++.++..++. +. ...++++.++..++
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i---~~---------------~~~gi~l~~l~~~v 153 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGI---PP---------------WITGIILAILVALV 153 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhccc---cH---------------HHHHHHHHHHHHHH
Confidence 99999998654 444444333333222 334444445555544431 11 15667777778888
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccC------CCCCCCcch-hHHHH---------HHHHHHHhc
Q 007861 215 LCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVK------PGGLAPFGV-KGIVD---------GAATVYFSY 278 (587)
Q Consensus 215 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~-~~~~~---------~~~~~~~~~ 278 (587)
..-|+|..+++...+.-++.+.-+...+..+.. +.++..+ .+.+.+... .++.. ++.=.+|+=
T Consensus 154 i~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSN 232 (416)
T PF01235_consen 154 IFGGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSN 232 (416)
T ss_pred HHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccC
Confidence 888999999999888887776655444333221 1111110 012222211 11111 111123333
Q ss_pred ---cchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc--ccch-HHHHHHHhChhHHHHHHH
Q 007861 279 ---IGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL--KDAS-FSMAFRNIGWAWASNVVG 352 (587)
Q Consensus 279 ---~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~i~~ 352 (587)
.|.....+-+.|+++|.|.--.+++-..+-+.++..+..+++.....++... ++.. ...+++..-+++...++.
T Consensus 233 EAG~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~ 312 (416)
T PF01235_consen 233 EAGLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVA 312 (416)
T ss_pred CCCCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHH
Confidence 3667777778899999988777776666656666777666666544322222 1222 344556555588899999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhh
Q 007861 353 AGASLGIVASLLVAMLGQARYLCVIG 378 (587)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~sR~l~a~a 378 (587)
+.+++-.+++.+++.+..-|.+..+-
T Consensus 313 i~l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 313 IALFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999988888776544
No 57
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.17 E-value=7.3e-08 Score=98.86 Aligned_cols=288 Identities=15% Similarity=0.231 Sum_probs=167.9
Q ss_pred cccChhHHHHHhhcccccccchhccHhhhhhhcCchH-HHHHHHHHHHHHHHHHHHHHHhhccc---cC----CchhhhH
Q 007861 68 RKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSV-FISYIIAGISALLSSLCYTEFSVQIP---VA----GGAFSYL 139 (587)
Q Consensus 68 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~ll~~~~~~~~a~~~ael~s~~P---~~----GG~y~~~ 139 (587)
+++|.++.++.+.+..+|.|-......+. ..+||++ +|.|+.+.+ ...+.+.-.-++-++. +. ||...|.
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai-~~GGpGAvFWMWI~all-Gm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi 122 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAI-AIGGPGAVFWMWVTAFI-GMATKFVESTLAQKYRERDADGVFRGGPMYYI 122 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHH-HhcCCCchHHHHHHHHH-HHHHHHHHHHHHHHeeeeCCCCCEecChHHHH
Confidence 46999999999999999998444444444 3589984 555544433 3333333333443333 22 3444788
Q ss_pred HHHhc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHh
Q 007861 140 RVTFG-EFVGYFAGANILMEY-VLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCH 217 (587)
Q Consensus 140 ~~~~g-~~~g~~~g~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (587)
++.++ |++|.+.+.. .+.+ ...........++.++..++ .+.| ..++++.++...+..-
T Consensus 123 ~~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~---~~~~---------------v~~i~l~~l~~~vi~G 183 (425)
T TIGR00835 123 KKGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFN---VPKL---------------VTGIVLTVLTALIIFG 183 (425)
T ss_pred HHHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcC---CcHH---------------HHHHHHHHHHHHHHhc
Confidence 88765 7777776666 3344 34456666666666664443 1122 5566666666666666
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCC------CCCCCcch-hHHHH---------HHHHHHHhc---
Q 007861 218 GTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKP------GGLAPFGV-KGIVD---------GAATVYFSY--- 278 (587)
Q Consensus 218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~------~~~~~~~~-~~~~~---------~~~~~~~~~--- 278 (587)
|.|..+|+...+..++....+...+.... .+.++..+. +.+.+... .++.. |+.=..|+-
T Consensus 184 Gik~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG 262 (425)
T TIGR00835 184 GLKRIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAG 262 (425)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccc
Confidence 99999999998888877765443332221 122222110 12222211 11111 111123433
Q ss_pred cchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCC-c-ccccchHH-HHHHHhChhHHHHHHHHHH
Q 007861 279 IGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYN-K-ILKDASFS-MAFRNIGWAWASNVVGAGA 355 (587)
Q Consensus 279 ~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~-~-~~~~~~~~-~~~~~~~~~~~~~i~~~~~ 355 (587)
.|....+|-+.|+++|.|.--.+++-..+-+.+...+..+++.....++ . ..++..+. .+++..-++++..++.+..
T Consensus 263 ~Gsa~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~ 342 (425)
T TIGR00835 263 MGSAPIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVAL 342 (425)
T ss_pred cCcHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3666667778888899877655555544445555666666554433332 1 11222332 3455544568889999999
Q ss_pred HHHHHHHHHHHHHhhHHHHHHh
Q 007861 356 SLGIVASLLVAMLGQARYLCVI 377 (587)
Q Consensus 356 ~~~~~~~~~~~~~~~sR~l~a~ 377 (587)
++-.+++..++.+..-+.+..+
T Consensus 343 ~lFaftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 343 FLFAFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988887776555
No 58
>PRK11375 allantoin permease; Provisional
Probab=99.12 E-value=5.9e-07 Score=95.59 Aligned_cols=331 Identities=13% Similarity=0.058 Sum_probs=162.4
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHhhccccCC-chhhhH
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS---VFISYIIAGISALLSSLCYTEFSVQIPVAG-GAFSYL 139 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~s~~P~~G-G~y~~~ 139 (587)
++.+|+-++++.+.+=++..+..+.+...+... ..|.+ ++++.+++.++... ..+-.+..-++.| +.....
T Consensus 21 p~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l--~~GLs~~~ai~ai~lG~~i~~~---~~~l~g~~G~~~Gl~~~v~s 95 (484)
T PRK11375 21 TQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFF--ILGLSTFSIMLAIILSAFFIAA---VMVLNGAAGSKYGVPFAMIL 95 (484)
T ss_pred CccccCCcHHHHHHHHHHHhccHHHHHHHHHHH--HccchHHHHHHHHHHHHHHHHH---HHHHhcccccccCCChhHhH
Confidence 334677888888887777665544432222222 13433 44444444444333 3333444444445 567788
Q ss_pred HHHhchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhCCCCC--CCcccccccccccCCc-chHHHHHHHHHHHHHH
Q 007861 140 RVTFGEFVGYFAGANIL-MEYVLSNAAVARSFTDYLCHAVGENDP--NSWRVEVDGLFKGYNM-LDFPAVALVLLLTLCL 215 (587)
Q Consensus 140 ~~~~g~~~g~~~g~~~~-l~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 215 (587)
|..||.+.+.+.+.... +..+...+......++.+........+ ..+..++|. .+... ..+..+++.++...+.
T Consensus 96 R~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~--~g~~~~~~i~~~i~~~l~~~~~ 173 (484)
T PRK11375 96 RASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTL--LGLSLPGLITFLIFWLVNVGIG 173 (484)
T ss_pred HHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccc--CCCcHHHHHHHHHHHHHHHHHH
Confidence 88999887777777763 455666666666666665544321110 011111110 00000 1122334445566677
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCC---CC-CcchhHHHHHHHHHHHhcc-chhhhhchhHh
Q 007861 216 CHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGG---LA-PFGVKGIVDGAATVYFSYI-GYDSVSTLAEE 290 (587)
Q Consensus 216 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~-G~e~~~~~~~E 290 (587)
..|.|...+++.+...+.++..+.+.+..+...+.+...+..+ .. ......+..++...+-++. +.-..+.++..
T Consensus 174 ~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy 253 (484)
T PRK11375 174 FGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQN 253 (484)
T ss_pred HcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhcc
Confidence 8899999999988888777666555544444333322211101 00 1112224444433333333 44457788888
Q ss_pred hcCcCCCcchHHHHHHHHHHHHHHHHHHHH-hhccc-CCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-HHH
Q 007861 291 IQNPSKSLPLGIVGSVLIVSLLYSLMALSL-CLMVP-YNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLL-VAM 367 (587)
Q Consensus 291 ~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~ 367 (587)
.|++ |+.-++...+..+...+.....+.. ..... ..+ ...+|. .+....+...+..+..+..+++..++.. ...
T Consensus 254 ~k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~-~~~dp~-~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ 330 (484)
T PRK11375 254 AHSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGA-DTWNVL-DIVQRWDSLFASFFAVLVILMTTISTNATGNI 330 (484)
T ss_pred cCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcCCHH-HHHHHhcchHHHHHHHHHHHHHHHHHHHHhhc
Confidence 8887 4555676666666554432222221 11111 011 112333 3333333334444444455555555532 344
Q ss_pred HhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcH
Q 007861 368 LGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTEL 417 (587)
Q Consensus 368 ~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~ 417 (587)
+..+- .-.+.+||.. |.| ++.++.++++.+++....+
T Consensus 331 ys~~~-----~l~~l~pk~i---~~~-----~~~~i~~iig~~~~pw~~~ 367 (484)
T PRK11375 331 IPAGY-----QIAALAPTKL---TYK-----NGVLIASIISLLICPWKLM 367 (484)
T ss_pred ccHHH-----HHHHhCcCcc---chh-----hHHHHHHHHHHHhccHHHh
Confidence 44433 3344667543 212 3566666666666655333
No 59
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.04 E-value=1.3e-06 Score=88.24 Aligned_cols=292 Identities=17% Similarity=0.249 Sum_probs=189.8
Q ss_pred ccccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccc-------cCCchh
Q 007861 65 DMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIP-------VAGGAF 136 (587)
Q Consensus 65 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P-------~~GG~y 136 (587)
+-++.+|+++.++.+.+..+|+|=...-..+... +||+ .+|.|+.+. +...+.+.=+-|+..|. -.||.-
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al-~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~ 135 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVAL-FGMATKFAESTLAQKYRVKDKDGEYRGGPA 135 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHH-HHHHHHHHHHHHHhheeEeCCCCCCcCChH
Confidence 3467799999999999999999988888877754 9998 666666554 44444555555666554 247899
Q ss_pred hhHHHHhc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHH
Q 007861 137 SYLRVTFG-EFVGYFAGANILMEYV-LSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLC 214 (587)
Q Consensus 137 ~~~~~~~g-~~~g~~~g~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (587)
+|.++.+| |..|.+.+....+.+- ......+...++.++..++.. ....++++.++..++
T Consensus 136 yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~------------------~~~~gi~la~l~~~V 197 (452)
T COG1115 136 YYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP------------------PLVTGIVLALLVALV 197 (452)
T ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc------------------HHHHHHHHHHHHHHH
Confidence 99999998 5557666666666655 467777777888888777611 126777788888888
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc-ccc-cc-----CccCCCCCCCc----chh------HHHHHHHHHHHh
Q 007861 215 LCHGTKESSILNLIMTIFHVVFFGFIIIAGFC-NGS-VQ-----NLVKPGGLAPF----GVK------GIVDGAATVYFS 277 (587)
Q Consensus 215 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~-~~~-~~-----~~~~~~~~~~~----~~~------~~~~~~~~~~~~ 277 (587)
..-|+|..+++......++-+.-+...+..+. +.+ .. -+. +.+.+. |.. .+..++.=..|+
T Consensus 198 I~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~--sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfS 275 (452)
T COG1115 198 IFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFS--SAFGPKAAAGGFAGYTVAQAIRNGVKRGLFS 275 (452)
T ss_pred HHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHH--hcCCchhhhhhhhhHHHHHHHHHHHHHHhhc
Confidence 99999999999887777665544333322211 111 00 011 122222 111 112222223444
Q ss_pred c---cchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc--ccchH-HHHHHHhChhHHHHHH
Q 007861 278 Y---IGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL--KDASF-SMAFRNIGWAWASNVV 351 (587)
Q Consensus 278 ~---~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~i~ 351 (587)
- .|....++-+.++++|.|+--..++...+-..+++....+.+.....++..+ ++..+ ..+++..-++++..++
T Consensus 276 NEAGmGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv 355 (452)
T COG1115 276 NEAGMGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFV 355 (452)
T ss_pred ccccCCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHH
Confidence 3 3555566667778899877656655555546666666666666555443332 33334 3455666667999999
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 007861 352 GAGASLGIVASLLVAMLGQARYLCVIG 378 (587)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~sR~l~a~a 378 (587)
.+.+++-.+++.+++.+-.-|.+.-+-
T Consensus 356 ~i~l~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 356 AIALFLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999988888776554
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.98 E-value=2.9e-06 Score=82.00 Aligned_cols=268 Identities=17% Similarity=0.156 Sum_probs=162.8
Q ss_pred HHHhhcccccccchhccHhhhhhhcCc---hHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHHH
Q 007861 76 VALGVGGMLGVGVFVTTGPVALQISGP---SVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAG 152 (587)
Q Consensus 76 ~~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g 152 (587)
.+..++.++|.|. ..|+-..+.-|+ ...++.++++++....+....++++++. +...-++.++.+||.++.+.-
T Consensus 9 ~f~~ig~~vGAGf--AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d 85 (349)
T COG3949 9 AFAFIGTVVGAGF--ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIID 85 (349)
T ss_pred HHHHHHHhhcccc--cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHH
Confidence 3445667788773 344444444554 3889999999999999999999999986 345778999999999998776
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhh-hhhhHHHHHHHH
Q 007861 153 ANILMEYVLSNAAVARSF-TDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHG-TKESSILNLIMT 230 (587)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~k~~~~~~~~~~ 230 (587)
....+. .+..+....+. +..+++.++. +.| +-+++++.....+..++ ++..-+++.+..
T Consensus 86 ~~iif~-lf~~~vVM~AGags~~~e~~~l---P~w---------------iGali~i~~v~i~lfl~~vegi~tvn~iI~ 146 (349)
T COG3949 86 IIIIFF-LFSTAVVMLAGAGSLLEEMFGL---PYW---------------IGALIIILLVLILLFLGRVEGIITVNGIIT 146 (349)
T ss_pred HHHHHH-HHHHHHHHhccchhHHHHHhCc---cHH---------------HHHHHHHHHHHHHHHHhcccceeeeheeHH
Confidence 555443 34444444444 4477777761 122 33366666666666666 777777777666
Q ss_pred HHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHH
Q 007861 231 IFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVS 310 (587)
Q Consensus 231 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~ 310 (587)
.+.++.+..+........+.+.+....+- ..+|..-..+ ..+.--....-....+++|+|++ |+..++-..+-++.+
T Consensus 147 P~LIi~l~~v~~~~~f~~~~~~a~~~~~~-~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlg 223 (349)
T COG3949 147 PFLIIILVLVTLSFQFTNLGNAAQIVLTK-QGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILG 223 (349)
T ss_pred HHHHHHHHHHHHHHHHhhccchhhhcCCc-CCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHH
Confidence 66555433222221111111111111111 1122211111 11111113444566778999997 567788888888877
Q ss_pred HHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 311 LLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQ 370 (587)
Q Consensus 311 v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 370 (587)
++-.+.........+ +-...+-|..++++..+ +....++.+.......++..+.+++.
T Consensus 224 vl~~l~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~l 281 (349)
T COG3949 224 VLLFLINLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYGL 281 (349)
T ss_pred HHHHHHHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777776665444 23334568888888776 66666777777777777776666653
No 61
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.88 E-value=1.7e-10 Score=121.47 Aligned_cols=361 Identities=14% Similarity=0.106 Sum_probs=206.1
Q ss_pred cccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccc---cCCchhhhHHHHh
Q 007861 68 RKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIP---VAGGAFSYLRVTF 143 (587)
Q Consensus 68 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P---~~GG~y~~~~~~~ 143 (587)
|+-|.++.....++.++|.|++..|-... .+|.. ..+..++.++++......+.|.....| +.....+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~--~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA--QSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH--HhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 46688999999999999999999987765 36764 667777777788888888888888765 3333444557889
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHH-Hhhhhhh
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCL-CHGTKES 222 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~k~~ 222 (587)
|++.++++.....+........+....++.+...++....+ .. . +.. ...++..++..-+. ....+..
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-~~-----~--~~~---~~~~i~~~i~~pls~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-LF-----I--SRY---VWIIIFALIVLPLSFLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-cc-----c--ccc---ccccccccccccccccchhhHH
Confidence 99999999988888888777777777777777766522111 00 0 000 11111222222222 2223333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc--ccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCC--Cc
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFCN--GSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSK--SL 298 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r--~i 298 (587)
+..+.......+..+.+........ .+.++........+..+.++..++....++|.++.....+.+|+|+|+| ++
T Consensus 148 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~ 227 (409)
T PF01490_consen 148 RYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM 227 (409)
T ss_pred HHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccc
Confidence 3332222222211101111111111 1111222111222344567899999999999999999999999999864 34
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChh-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHh
Q 007861 299 PLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWA-WASNVVGAGASLGIVASLLVAMLGQARYLCVI 377 (587)
Q Consensus 299 p~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (587)
.|+...+..+.+++|.+..+..+...+++..+ .+....... +...+..+...+..+.+..-..+...+.+...
T Consensus 228 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~------~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~ 301 (409)
T PF01490_consen 228 KKVLSISMIICFIIYLLFGIFGYLAFGDSVQG------NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL 301 (409)
T ss_pred ceeeeehhhhhhHHhhhhhhcccceeeeeecc------hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh
Confidence 59999999999999999988877766543222 122222222 34455555555555555444555555555544
Q ss_pred hhcC--CCchHHhhhcCCCCcchHHH-HHHHHHHHHH-HhhhcHHHHHHHHH--HHHHHHHHHHHHHHHHHhhhccC
Q 007861 378 GRAR--LVPTWLAKVHPSTGTPLNAT-LFLGLCTASI-ALFTELNIVLEMIS--ISTLLVFYLVANALIYRRYVMIS 448 (587)
Q Consensus 378 a~dg--~lP~~~~~~~~~~~~P~~a~-~~~~~~~~~~-~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~~~~ 448 (587)
-++. ..+ ...+..++.+.-...+ ....+++.++ ....+++.+.++.+ .+..+.|.++.+.+++.+++++.
T Consensus 302 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~ 377 (409)
T PF01490_consen 302 LFKRAASSR-DSPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRN 377 (409)
T ss_pred eeccccccc-cccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccccc
Confidence 3321 000 0000000000111111 1111222222 22366777777764 33467888888888887766543
No 62
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.88 E-value=1.5e-05 Score=81.96 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Q 007861 104 VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDP 183 (587)
Q Consensus 104 ~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (587)
++++.+++-++.......+++++.+...+ +..-.|..||...+.+.....++.++-..+......++......+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~---- 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG---- 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC----
Confidence 56666666666666666666666555433 445557789999999998888888887777776666554221110
Q ss_pred CCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccC-ccCCCCCCCc
Q 007861 184 NSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQN-LVKPGGLAPF 262 (587)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-~~~~~~~~~~ 262 (587)
++ .....++..++.++...+|.|...+++.+......+..+......+-..+..+ ..... |.
T Consensus 128 ---------~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~---~~ 190 (442)
T COG1457 128 ---------LP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKG---PT 190 (442)
T ss_pred ---------Cc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccC---CC
Confidence 00 11344555567888899999999999999999888877766666554222222 22111 33
Q ss_pred chhHHHHHHHHHHHhc-cchhhhhchhHhhcCcCC-CcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHH
Q 007861 263 GVKGIVDGAATVYFSY-IGYDSVSTLAEEIQNPSK-SLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFR 340 (587)
Q Consensus 263 ~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~r-~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (587)
.+.+++.++..++-.+ .+--.++.++.-.|+|+- +.-.+...+......+..+.-.+.....+.++ +..+...
T Consensus 191 ~~~~fl~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~-----~~~~~~~ 265 (442)
T COG1457 191 SPLSFLSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD-----SIADVML 265 (442)
T ss_pred cchhHHHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-----hHHHHHH
Confidence 3444555555444333 333446677777777641 22222233333333222222222222222222 2334444
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q 007861 341 NIGWAWASNVVGAGASLGIVASLLVAMLGQAR 372 (587)
Q Consensus 341 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 372 (587)
..|+ +.....+.+.++..++....+++.+=
T Consensus 266 ~~G~--~g~~~~lil~l~~~ttN~~nlYsa~l 295 (442)
T COG1457 266 GLGG--FGLPAILILVLGTVTTNANNLYSAGL 295 (442)
T ss_pred hccc--HHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4443 44555555555655555555555443
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=98.85 E-value=6.1e-05 Score=78.61 Aligned_cols=184 Identities=14% Similarity=0.081 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCC-chhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007861 104 VFISYIIAGISALLSSLCYTEFSVQIPVAG-GAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGEND 182 (587)
Q Consensus 104 ~~~~~ll~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (587)
++++.+++.++........+ ..-|+.| +.....|..||.+.+.+.+...++..+...+......+..+...++ .+
T Consensus 44 ai~aiilG~~i~~~~~~l~~---~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~-~~ 119 (404)
T PRK11017 44 FLLAVLIGNLLLGIYTAALG---YIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG-LD 119 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-CC
Confidence 55555555544443333333 3344445 4666778889999999888888877777777777666666666554 11
Q ss_pred CCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-ccCccCCCCCCC
Q 007861 183 PNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGS-VQNLVKPGGLAP 261 (587)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~~~ 261 (587)
. ....+++.++.......|.|...+++.+......+..+...+....+.+ .+...+..+..+
T Consensus 120 ~-----------------~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 182 (404)
T PRK11017 120 I-----------------NLLIVLSGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEP 182 (404)
T ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCc
Confidence 0 0223344455666778888999999888777666655444433322221 222221111112
Q ss_pred cchhHHHHHHHHHH-HhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHH
Q 007861 262 FGVKGIVDGAATVY-FSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLL 312 (587)
Q Consensus 262 ~~~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~ 312 (587)
..++.++...+ +...+.-..+.++...|+++ +.-.+...+..+..++
T Consensus 183 ---~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~-~~~~~~~lg~~i~~~~ 230 (404)
T PRK11017 183 ---LDFSAALTLVVGSFISGGTLTADFVRFGRSAK-IAVLATMVAFFLGNSL 230 (404)
T ss_pred ---ccHHHHHHHHHHHHHHhHhcCCChHhhccCcc-ceeehhHHHHHHHHHH
Confidence 23444433322 22355566788889988875 4446666665554443
No 64
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=98.74 E-value=2.3e-08 Score=69.37 Aligned_cols=51 Identities=33% Similarity=0.823 Sum_probs=48.9
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhhhhccccc
Q 007861 509 WSVPFMPWPAAISIFLNVFLMTTLKLLSYQRFAMWTCLITLFYVLYGVHST 559 (587)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (587)
||+|..|++|.++++.|++++..+...+|+.+++|+++|++.|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 578999999999999999999999999999999999999999999999874
No 65
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.72 E-value=9.2e-05 Score=76.27 Aligned_cols=330 Identities=10% Similarity=0.068 Sum_probs=174.1
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
++.+|+-++++.+.+=.+.+...+-+...+......-++. .+++.+++-++.......-+..++++-. +.-.-.+..
T Consensus 35 ~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gI--pFpv~~RaS 112 (497)
T COG1953 35 PAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGI--PFPVLSRAS 112 (497)
T ss_pred ccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCC--CchHHHHHH
Confidence 3456889999998887777655554544444442212233 6666666666655555555554444422 234456778
Q ss_pred hchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccc--cccccCCcchHHHHHHHH-HHHHHHHhhh
Q 007861 143 FGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVD--GLFKGYNMLDFPAVALVL-LLTLCLCHGT 219 (587)
Q Consensus 143 ~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~g~ 219 (587)
||-+.+-.-...-.+.-+......+...+..++.+.....+. ++...+ +..... ...++...+.+ +...+...|.
T Consensus 113 FGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~-~~~~~~~~~~lg~t-t~~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 113 FGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPS-LLIPNTLSPLLGLT-TLELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccc-cccCCccccccCCc-HHHHHHHHHHHHHHHHHHhcCH
Confidence 888777777766666666666777777776666555322111 221111 011111 11233333333 3445667799
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcccccccCcc-CC---CCCCCcchhHHHHHHHHHHHhc-cchhhhhchhHhhcCc
Q 007861 220 KESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLV-KP---GGLAPFGVKGIVDGAATVYFSY-IGYDSVSTLAEEIQNP 294 (587)
Q Consensus 220 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p 294 (587)
+..+|++.+...+..+..+.+.+....+.+..+.. +. ..-.+..++.++.++...+-.+ +..-..+..+.+.|+|
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~ 270 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ 270 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh
Confidence 99999999999999998888888877766542221 11 1111222333444432222211 4445567778888887
Q ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHhhcc----cCCcccccchHHHHHHHhChhHHHH-HHHHHHHHHHHHHHHHHHHh
Q 007861 295 SKSLPLGIVGSVLIVSLLYSLMALSLCLMV----PYNKILKDASFSMAFRNIGWAWASN-VVGAGASLGIVASLLVAMLG 369 (587)
Q Consensus 295 ~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~ 369 (587)
|+.-++-++++.+...+.-+..++..... +..-. +| .++.++........ +..+..+++..+.-.+.-..
T Consensus 271 -~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w---~P-~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~v 345 (497)
T COG1953 271 -KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIW---DP-LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIV 345 (497)
T ss_pred -hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccC---CH-HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccC
Confidence 45556666666666655555444433211 11111 22 23444444343443 44455555555543322222
Q ss_pred hHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh
Q 007861 370 QARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF 414 (587)
Q Consensus 370 ~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 414 (587)
++-.= -.+.+||.... | ++.+++++++++++=.
T Consensus 346 sp~~D----~s~l~Pk~in~---k-----rg~liaA~ial~~~PW 378 (497)
T COG1953 346 SPGYD----LSALFPKYINI---K-----RGGLIAAIIALLICPW 378 (497)
T ss_pred ChHHH----HHHhcccccch---h-----hhHHHHHHHHHHHcCh
Confidence 22111 12356665552 2 3456666666655543
No 66
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.69 E-value=0.00048 Score=73.96 Aligned_cols=285 Identities=14% Similarity=0.105 Sum_probs=151.9
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHH---HHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISY---IIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~---ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
.|+++++...+..+++.++.+.+......... .|.+ .+.+. ....+.....+.-+.++.++.. .-..++|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN-AVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CccHHHHHHHH
Confidence 58899888777777777776555554443323 3433 22111 1111122223334455555543 34578899998
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 143 FGEF-VGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 143 ~g~~-~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
+|+. ...+.+....+..+...+....+.+..++..++.. . + ..+.+...+.......-|.|.
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~-~--~--------------~~iii~~~iv~iYt~~GGl~a 180 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGIS-Y--E--------------TGLLIFGITVALYTAFGGFRA 180 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-H--H--------------HHHHHHHHHHHHHHHhccHHH
Confidence 8854 56677776666666677777778888888877611 0 0 012222333355566678888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc-cc----cCccC-----CCCCCCcc---hhHHHHHHHHHHHhccchhhhhchh
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFCNG-SV----QNLVK-----PGGLAPFG---VKGIVDGAATVYFSYIGYDSVSTLA 288 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~----~~~~~-----~~~~~~~~---~~~~~~~~~~~~~~~~G~e~~~~~~ 288 (587)
..+...+-..+.++..+++....+... +. ++..+ ..+..+.+ +..+............+.....+-.
T Consensus 181 v~~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 260 (483)
T PRK09442 181 VVLTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRC 260 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 887777666666555444333222111 11 00000 01111111 1111111111222333444444445
Q ss_pred HhhcCcCCCcchHHHHHHHHHHHHHHHHHHHH-h-h-cccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 007861 289 EEIQNPSKSLPLGIVGSVLIVSLLYSLMALSL-C-L-MVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLV 365 (587)
Q Consensus 289 ~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 365 (587)
-..||+ |+..|+..++.+....+++...+.- . . ..| +..+++..++...++..++++..++...++.+..++..+
T Consensus 261 ~aaks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p-~~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s 338 (483)
T PRK09442 261 MSYKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLP-DLTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDS 338 (483)
T ss_pred HHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH
Confidence 557776 5778888888776666555433321 1 1 123 222234556666666666888888888888888877777
Q ss_pred HHHhhHH
Q 007861 366 AMLGQAR 372 (587)
Q Consensus 366 ~~~~~sR 372 (587)
.+.+.+-
T Consensus 339 ~l~~~ss 345 (483)
T PRK09442 339 QLLQSSS 345 (483)
T ss_pred HHHHHHH
Confidence 7766554
No 67
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.58 E-value=0.00014 Score=77.17 Aligned_cols=242 Identities=12% Similarity=0.075 Sum_probs=123.4
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHhhccccCC-chhhhH
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS---VFISYIIAGISALLSSLCYTEFSVQIPVAG-GAFSYL 139 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~s~~P~~G-G~y~~~ 139 (587)
++.+|+-++++.+.+=++..+...-+..-+... . .|.+ ++++.+++.++........+..+ |+.| ......
T Consensus 8 p~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G---~r~Gl~~~v~s 82 (442)
T TIGR00800 8 KEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRAG---AKYGLPFPVLS 82 (442)
T ss_pred CcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhH---HHhCCCcchhh
Confidence 344566788888877776655433333322222 1 2332 45555555444444433444444 4444 467778
Q ss_pred HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHH--HHHHh
Q 007861 140 RVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLT--LCLCH 217 (587)
Q Consensus 140 ~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 217 (587)
|..||.+.+.+.+...++..+...+......++.++..+....+...... ++. .....+..+++..+. +....
T Consensus 83 R~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~-~~~----t~~~~~~~~i~~~l~~~~~~~~ 157 (442)
T TIGR00800 83 RASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLG-NGM----TTLELICFIIFWALVLVFLFFF 157 (442)
T ss_pred hhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccC-Ccc----cHHHHHHHHHHHHHHHHHHHcC
Confidence 88999999999999999988888888888888777666542211100000 000 001122222222222 23455
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-ccCcc-CCC-CCCCcchhHHHHHHHHHH-HhccchhhhhchhHhhcC
Q 007861 218 GTKESSILNLIMTIFHVVFFGFIIIAGFCNGS-VQNLV-KPG-GLAPFGVKGIVDGAATVY-FSYIGYDSVSTLAEEIQN 293 (587)
Q Consensus 218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~G~e~~~~~~~E~k~ 293 (587)
|.|...+.+.......++.++..+.. ..+.+ ..+.. ... ...+.....++.++...+ +...+....+.++...|+
T Consensus 158 g~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~ 236 (442)
T TIGR00800 158 GYKIRHLFEWLAVVPPFAAFGMLIWA-LSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKS 236 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCC
Confidence 66666665555554444443333322 22211 11111 110 011223344555544433 223455567888888888
Q ss_pred cCCCcchHHHHHHHHHHHHHHHHH
Q 007861 294 PSKSLPLGIVGSVLIVSLLYSLMA 317 (587)
Q Consensus 294 p~r~ip~ai~~~~~~~~v~y~~~~ 317 (587)
++ +-.++...+.....+...+..
T Consensus 237 ~~-~~~~~~~~~~~~~~~~~~~~g 259 (442)
T TIGR00800 237 KK-TAIWGQFLALPGGFTLTCFFG 259 (442)
T ss_pred cc-chHHHHHHHHHHHHHHHHHHH
Confidence 74 455666666655554444433
No 68
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.54 E-value=0.00022 Score=74.87 Aligned_cols=287 Identities=11% Similarity=0.008 Sum_probs=157.4
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch-
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE- 145 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~- 145 (587)
.|+++++......+++.++.+.+......... .|...++..+...+.....+..+.+.-++.+ .-..++|.++.+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47889988888777877776666555444433 4533322222223334445666666655544 34588999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSIL 225 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~ 225 (587)
....+.+....+..+...+....+.+..++..++.. . + ..+.+...+.......-|.|...+.
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~-~--~--------------~~~ii~~~i~~~Yt~~GG~~av~~T 142 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLD-L--Y--------------LSLLLLGAITILYTVFGGLKAVVWT 142 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch-H--H--------------HHHHHHHHHHHHHHHHcchHHHHHH
Confidence 566777788788888888889888888888887611 1 1 0122233334455666788888887
Q ss_pred HHHHHHHHHHHHHHHHhhhccccc-ccC----ccCCC------------CCCCc----chhHHHHHHHHHHHhccchhhh
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGS-VQN----LVKPG------------GLAPF----GVKGIVDGAATVYFSYIGYDSV 284 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~-~~~----~~~~~------------~~~~~----~~~~~~~~~~~~~~~~~G~e~~ 284 (587)
..+-.++.++..+++.+..+.+.+ +++ ..+.. ...+. .+.-...+.+.....+..-...
T Consensus 143 d~iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 222 (407)
T TIGR00813 143 DTIQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYWTNQVI 222 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHhcCHHH
Confidence 776666665544433333222111 100 00000 00000 0100111111111111111112
Q ss_pred hchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHh---hccc---CC-c----ccccchHHHHHHHhChhHHHHHHHH
Q 007861 285 STLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLC---LMVP---YN-K----ILKDASFSMAFRNIGWAWASNVVGA 353 (587)
Q Consensus 285 ~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~---~~~~---~~-~----~~~~~~~~~~~~~~~~~~~~~i~~~ 353 (587)
.+-.=-.||+ |+.+|+...+.+...+.+++..+.-. ...+ ++ + .+++..++...+...++++.-++.+
T Consensus 223 ~qR~~a~ks~-~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~a 301 (407)
T TIGR00813 223 VQRCLAAKSA-KHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLA 301 (407)
T ss_pred hhHHHhcCCH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHH
Confidence 3333444665 67889988887766665543332211 1122 11 1 1334556666666666888888888
Q ss_pred HHHHHHHHHHHHHHHhhHHH
Q 007861 354 GASLGIVASLLVAMLGQARY 373 (587)
Q Consensus 354 ~~~~~~~~~~~~~~~~~sR~ 373 (587)
.++.+..++..+.+.+.+-.
T Consensus 302 gilaA~mST~~s~l~a~ss~ 321 (407)
T TIGR00813 302 AILAAVMSTLSSQLNSASTV 321 (407)
T ss_pred HHHHHHHHhhhhhHHHHHHH
Confidence 88888888877777776654
No 69
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.50 E-value=0.0032 Score=67.49 Aligned_cols=287 Identities=13% Similarity=0.069 Sum_probs=154.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchH-HHHH---HHHHHHHHHHHHHHHHHhhccccCCchhhhHHHH
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSV-FISY---IIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVT 142 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~ 142 (587)
.|+++++......+++.+|.+.+......... .|... ...+ ..+.++....+.-+.+..++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 48899998888888888876666554443323 34321 1111 111111111233334444444 334588899999
Q ss_pred hchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh
Q 007861 143 FGEF-VGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE 221 (587)
Q Consensus 143 ~g~~-~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~ 221 (587)
+|++ ...+++....+..+........+.+..++..++.. .+ ..+.+...+.......-|.|.
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~---~~--------------~~iii~~~iv~iYt~~GG~~a 179 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLS---YL--------------TALFIFSSSVLIYTTFGGFRA 179 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HH--------------HHHHHHHHHHHHHHHhhhHHH
Confidence 9954 56677766666666666677777777787777611 11 012222233455566678888
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc-cccC----ccC--C---CCCCCcch--hHHHHHH-HHHHHhccchhhhhchh
Q 007861 222 SSILNLIMTIFHVVFFGFIIIAGFCNG-SVQN----LVK--P---GGLAPFGV--KGIVDGA-ATVYFSYIGYDSVSTLA 288 (587)
Q Consensus 222 ~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~----~~~--~---~~~~~~~~--~~~~~~~-~~~~~~~~G~e~~~~~~ 288 (587)
..+...+-..+.++..+++.+..+.+. +.++ ..+ + .++.+.++ ..+...+ ....+...+.+...+-.
T Consensus 180 v~~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~ 259 (471)
T TIGR02119 180 VALTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRC 259 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHH
Confidence 888877777666665544443333221 1110 000 0 11111111 1111111 11122223334444456
Q ss_pred HhhcCcCCCcchHHHHHHHHHHHHHHHHHHHH-hh-cccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHH
Q 007861 289 EEIQNPSKSLPLGIVGSVLIVSLLYSLMALSL-CL-MVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVA 366 (587)
Q Consensus 289 ~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 366 (587)
-..||+ |+..|+..++.+....+++...+.- .. ...++..+++..++....+..++++.-++...++.+..++..+.
T Consensus 260 ~aak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~ 338 (471)
T TIGR02119 260 MSYKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSL 338 (471)
T ss_pred HhcCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHH
Confidence 667776 6788998888776665554433322 11 11222223345566666666667888888878788888887777
Q ss_pred HHhhHHH
Q 007861 367 MLGQARY 373 (587)
Q Consensus 367 ~~~~sR~ 373 (587)
+.+.+-.
T Consensus 339 l~~~ss~ 345 (471)
T TIGR02119 339 LLQSSST 345 (471)
T ss_pred HHHHHHH
Confidence 7776554
No 70
>PRK12488 acetate permease; Provisional
Probab=98.43 E-value=0.0018 Score=70.50 Aligned_cols=227 Identities=10% Similarity=0.043 Sum_probs=120.9
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHH-HHHHHHHHhhccccCCchhhhHHHHhc-
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALL-SSLCYTEFSVQIPVAGGAFSYLRVTFG- 144 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~ael~s~~P~~GG~y~~~~~~~g- 144 (587)
.|++++|.......++.++...|......... .|...++ +.++..+.+. ..+.+++--++... --.++|.++-||
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 48899999887777777776665544433323 4543322 2233333322 23444544444332 246778888887
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
+....+++....+..+........+.+..++..++.. .+ ..+.+...+.......-|.|...+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~---~~--------------~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGIS---YL--------------YAVVIVGALMVLYVTFGGMLATTW 205 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---HH--------------HHHHHHHHHHHHHHhccchhHHHH
Confidence 5688888888777777788888888888888777611 11 012222233444555668888888
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc--ccCc-------cCC-CC-CCCc----chhHHHHHHHHHHHhccchhhhhchhH
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCNGS--VQNL-------VKP-GG-LAPF----GVKGIVDGAATVYFSYIGYDSVSTLAE 289 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~~~--~~~~-------~~~-~~-~~~~----~~~~~~~~~~~~~~~~~G~e~~~~~~~ 289 (587)
.+.+=.++.++..+++.+..+.+.+ .++. .+. .. ..|. ....++.......+.+.|.....+-.-
T Consensus 206 td~iQ~~im~~~~i~~~~~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~lg~~~~p~~~qR~~ 285 (549)
T PRK12488 206 VQIIKAVLLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLSNPIDAISLGLGMMFGTAGLPHILMRFF 285 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcCCcccccCHHHHHHHHHHHHHHhccCcHHHHHhh
Confidence 8777666665554443333222211 1000 000 00 1111 111122222222344445544444444
Q ss_pred hhcCcCCCcchHHHHHHHHHHHHHH
Q 007861 290 EIQNPSKSLPLGIVGSVLIVSLLYS 314 (587)
Q Consensus 290 E~k~p~r~ip~ai~~~~~~~~v~y~ 314 (587)
-.||+ |+..|+..++......+|+
T Consensus 286 aaks~-k~ar~s~~~~~~~~~~~~~ 309 (549)
T PRK12488 286 TVSDA-REARKSVLYATGFIGYFYL 309 (549)
T ss_pred cCCCH-HHHHHHHHHHHHHHHHHHH
Confidence 55776 6788888887655444443
No 71
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.36 E-value=0.0032 Score=67.94 Aligned_cols=286 Identities=9% Similarity=0.011 Sum_probs=133.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHH-HHHHHHHH-HHh---hccccCCchhhhHHH
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISA-LLSSLCYT-EFS---VQIPVAGGAFSYLRV 141 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~a-el~---s~~P~~GG~y~~~~~ 141 (587)
.|+++++....-..++.++...+......... .|....+. .++..+. +.....++ .+. .+.+..--.++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 48899998877777777765555543333322 45443222 2222222 11111111 111 112233357889999
Q ss_pred Hhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhh
Q 007861 142 TFGE---FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHG 218 (587)
Q Consensus 142 ~~g~---~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 218 (587)
-+|+ ....+.+....+..+...+....+.+..++..++.. + ...+.+...+.......-|
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~----~-------------~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMS----Y-------------ETALWAGAAATILYTFIGG 179 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC----H-------------HHHHHHHHHHHHHHHHhhh
Confidence 8984 455556655555566666666677777777776611 1 0122233334455566668
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccc-ccccC----c---c-CC-CCCCCcchhHHHHHHHHHHHhccchhhhhchh
Q 007861 219 TKESSILNLIMTIFHVVFFGFIIIAGFCN-GSVQN----L---V-KP-GGLAPFGVKGIVDGAATVYFSYIGYDSVSTLA 288 (587)
Q Consensus 219 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~~~~----~---~-~~-~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~ 288 (587)
.|...+...+=.++.++..+++.+..+.+ ++.++ . . +. +...+.++..+. +.......+.|.....+-.
T Consensus 180 l~aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~p~~~qR~ 258 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAII-SLMGWGLGYFGQPHILARF 258 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHH-HHHHHHHHHcCChHHHHhh
Confidence 88887777666666555443333222211 11110 0 0 00 111111222222 2211222233333222222
Q ss_pred HhhcCcCCCcchHHH----HHHHHHHHHHHHHHHHHhh--cccCC----cccccchHHHHHHHhChhHHHHHHHHHHHHH
Q 007861 289 EEIQNPSKSLPLGIV----GSVLIVSLLYSLMALSLCL--MVPYN----KILKDASFSMAFRNIGWAWASNVVGAGASLG 358 (587)
Q Consensus 289 ~E~k~p~r~ip~ai~----~~~~~~~v~y~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 358 (587)
--.||+| ++.++.. +.........++....... ..|.. ..+++..++...+....+++.-++..+++.+
T Consensus 259 ~aak~~~-~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA 337 (502)
T PRK15419 259 MAADSHH-SIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAA 337 (502)
T ss_pred eecCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHH
Confidence 2334542 2223322 2222211111111111111 11210 1123344566666566678888888888888
Q ss_pred HHHHHHHHHHhhHHH
Q 007861 359 IVASLLVAMLGQARY 373 (587)
Q Consensus 359 ~~~~~~~~~~~~sR~ 373 (587)
..++..+.+.+.+-.
T Consensus 338 ~mST~~s~l~a~ss~ 352 (502)
T PRK15419 338 VMSTLSCQLLVCSSA 352 (502)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888887777654
No 72
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.31 E-value=0.0063 Score=66.25 Aligned_cols=154 Identities=10% Similarity=0.040 Sum_probs=84.8
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHH-HHHHHHHHHhhccccCCchhhhHHHHhc-
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISAL-LSSLCYTEFSVQIPVAGGAFSYLRVTFG- 144 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~-~~a~~~ael~s~~P~~GG~y~~~~~~~g- 144 (587)
.|++++|.......++.++...|......... .|...++.. ++..+.+ ...+.+++--++.-. --..+|.++-||
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 58899887665555665654444433333322 454432222 2333332 233445554444322 235667777776
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
|....+.+....+..+........+.+..++..++. + .+ ..+.+...+.......-|.|...+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi-~--~~--------------~~iii~~~i~~~Yt~~GGm~av~~ 205 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGL-N--YH--------------VAVVLVGILMVMYVLFGGMLATTW 205 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-C--HH--------------HHHHHHHHHHHHHHHhhhhHHHHH
Confidence 567777777666666667777777777788777761 1 11 012222333444555668888888
Q ss_pred HHHHHHHHHHHHHHHH
Q 007861 225 LNLIMTIFHVVFFGFI 240 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~ 240 (587)
.+.+=.++.++..+++
T Consensus 206 td~iQ~~im~~g~i~~ 221 (549)
T TIGR02711 206 VQIIKAVLLLFGATFM 221 (549)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666665544433
No 73
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.23 E-value=0.01 Score=61.64 Aligned_cols=242 Identities=14% Similarity=0.079 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccCC-chhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Q 007861 104 VFISYIIAGISALLSSLCYTEFSVQIPVAG-GAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGEND 182 (587)
Q Consensus 104 ~~~~~ll~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (587)
++++.+++.++........+..+ |+.| ......|..||++.+.+......+..+...+......++.++...+...
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G---~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~ 107 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIG---ADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF 107 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh---cccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55555555554444444444444 4444 4677888899999999999999999999999998888888888765110
Q ss_pred CCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCc
Q 007861 183 PNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPF 262 (587)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 262 (587)
+. . . .....+++.++.......|.|...+++.+...+..+..+........+.+.....+.++ +
T Consensus 108 ~~----~-----~----~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~- 171 (386)
T TIGR02358 108 GE----E-----S----PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSELWNRAG--D- 171 (386)
T ss_pred CC----C-----c----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcCCCC--C-
Confidence 10 0 0 01222333345666778899999999999888877776665554444433222211111 1
Q ss_pred chhHHHHHHHHHHHh-ccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHH
Q 007861 263 GVKGIVDGAATVYFS-YIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRN 341 (587)
Q Consensus 263 ~~~~~~~~~~~~~~~-~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (587)
..+..++....-. ..+....++++...|+++ +.-++...+..+...+..+.........+.+ +|. +....
T Consensus 172 --~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~-----d~~-~~~~~ 242 (386)
T TIGR02358 172 --MSFAVAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLATGQT-----DII-SILAG 242 (386)
T ss_pred --ccHHHHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CHH-HHHHh
Confidence 2233232221111 122334778888888874 5567777777776666555555444433322 233 23333
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007861 342 IGWAWASNVVGAGASLGIVASLLVAMLGQARYLCV 376 (587)
Q Consensus 342 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (587)
.+.. .+..+...++..++.....+..+=-+..
T Consensus 243 ~g~~---~~~~~~~~l~~~~~n~~N~ys~~l~l~~ 274 (386)
T TIGR02358 243 AGLG---IPALLIILLSTVTTTFMDIYSAAISTGN 274 (386)
T ss_pred ccHH---HHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3321 2333444455555544444444444333
No 74
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.23 E-value=0.00012 Score=76.85 Aligned_cols=293 Identities=16% Similarity=0.087 Sum_probs=136.9
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchh
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEF 146 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~ 146 (587)
.|+++++......+++.+|.+.+......... .|....+..+...+.....++.++.--++. +.-..++|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 47889988877777777776555554333323 455433323333333333444444433322 3345789999999988
Q ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 147 V--GYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 147 ~--g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
. ..+.+....+..+...+....+.+..++..++ .+. . ..+.+...+.......-|.|...+
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g-i~~-----~-----------~~~~i~~~i~~iYt~~GGl~av~~ 145 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG-IPY-----N-----------TAILIVGVIVIIYTFFGGLRAVAW 145 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---H-----H-----------HHHHHHHHHHHHTTCTT------S
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccc-hhh-----h-----------HHHHHHHHHHHHhhhhhhHhhhhH
Confidence 8 66666666666777888888888888888776 110 0 011222222333444557787776
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-cc----c---CccC--CCCCCCcch---hHHHHHHHHHHHhccchhhhhchhH--
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCNG-SV----Q---NLVK--PGGLAPFGV---KGIVDGAATVYFSYIGYDSVSTLAE-- 289 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~~-~~----~---~~~~--~~~~~~~~~---~~~~~~~~~~~~~~~G~e~~~~~~~-- 289 (587)
...+-.++.++..+++.+..+.+. +. + +..+ .+.+.|.+. ...............|.....++..
T Consensus 146 td~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~ 225 (406)
T PF00474_consen 146 TDFIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRF 225 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHH
Confidence 666555555444433333322210 00 0 0000 001112211 0000000000001122222233333
Q ss_pred -hhcCcCCCcchHHHHHHHHHHHHHHHH------HHHHhhccc----CCcccccchHHHHHHHhChhHHHHHHHHHHHHH
Q 007861 290 -EIQNPSKSLPLGIVGSVLIVSLLYSLM------ALSLCLMVP----YNKILKDASFSMAFRNIGWAWASNVVGAGASLG 358 (587)
Q Consensus 290 -E~k~p~r~ip~ai~~~~~~~~v~y~~~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 358 (587)
-.||+ |+..|+...+.....+++... ........| ++..+++..++...+...++++.-++...++.+
T Consensus 226 ~aak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA 304 (406)
T PF00474_consen 226 LAAKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAA 304 (406)
T ss_dssp HSSSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHH
T ss_pred HhcCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHh
Confidence 33554 567788777765444433331 111222222 122233446677777777788888888888888
Q ss_pred HHHHHHHHHHhhHHHHHHhhhcCC
Q 007861 359 IVASLLVAMLGQARYLCVIGRARL 382 (587)
Q Consensus 359 ~~~~~~~~~~~~sR~l~a~a~dg~ 382 (587)
..++..+.+.+.+-. ++||=+
T Consensus 305 ~~ST~~s~l~a~ss~---~~~Di~ 325 (406)
T PF00474_consen 305 IMSTADSLLLAISSI---FSRDIY 325 (406)
T ss_dssp HHHHHHHHHHHHHHH---HHHHCC
T ss_pred hhHHHHHHHhhhhhh---hhHHhh
Confidence 888888888877764 456633
No 75
>PRK09395 actP acetate permease; Provisional
Probab=98.17 E-value=0.019 Score=62.60 Aligned_cols=153 Identities=12% Similarity=0.050 Sum_probs=86.2
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHH-HHHHHHHHhhccccCCchhhhHHHHhc-
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALL-SSLCYTEFSVQIPVAGGAFSYLRVTFG- 144 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~ael~s~~P~~GG~y~~~~~~~g- 144 (587)
.|++++|......+++.++...|......... .|...++ +.++..+... ..+.+++--++.. .--.++|.++.||
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 48899988777666776765555544433322 4543322 2233322222 2333333222221 1235667778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
+....+.+....+..+........+.+..++..++. + .+ ..+.+...+.......-|.|...+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi-~--~~--------------~~ili~~~i~~iYt~~GGm~av~~ 207 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGL-N--YH--------------VAVVLVGVLMMVYVLFGGMLATTW 207 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C--HH--------------HHHHHHHHHHHHHHhhcchHHHHH
Confidence 568888888777777777777777777777777661 1 11 122233334444555668888777
Q ss_pred HHHHHHHHHHHHHHH
Q 007861 225 LNLIMTIFHVVFFGF 239 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~ 239 (587)
...+=.++.++..++
T Consensus 208 TD~iQ~iim~~g~ii 222 (551)
T PRK09395 208 VQIIKAVLLLSGATF 222 (551)
T ss_pred HHHHHHHHHHHHHHH
Confidence 776666555554433
No 76
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.14 E-value=0.0024 Score=65.72 Aligned_cols=255 Identities=15% Similarity=0.139 Sum_probs=123.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhccc--cCCchhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 007861 101 GPSVFISYIIAGISALLSSLCYTEFSVQIP--VAGGAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAV 178 (587)
Q Consensus 101 G~~~~~~~ll~~~~~~~~a~~~ael~s~~P--~~GG~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~ 178 (587)
|....|..+++.++. +.+-|++.++- +.-+..+-.++.+|+.+++.......+..+........+.+.-++.++
T Consensus 12 Gy~Llw~lll~~~~~----~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~ 87 (358)
T PF01566_consen 12 GYSLLWVLLLSNLLK----YVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLF 87 (358)
T ss_pred CHHHHHHHHHHHHHH----HHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555444 44555555554 233567777888999999998888888888777777777776666655
Q ss_pred CCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccCccCC-
Q 007861 179 GENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGF-CNGSVQNLVKP- 256 (587)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~-~~~~~~~~~~~- 256 (587)
+ .+. + ...++..+....+.....+..+++++++..+..+..+.+++..+ .+.++....+.
T Consensus 88 g-~~~--~---------------~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~ 149 (358)
T PF01566_consen 88 G-IPL--W---------------IWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGL 149 (358)
T ss_pred C-CCc--H---------------HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhc
Confidence 3 111 1 22223333333333322444555555555555554333333322 23332221110
Q ss_pred -CCCCCcchhHHHHHHHHHHHhccchhhhhchh---HhhcCcCC---C-cchHHHHHHHHHHHHHHHHHHHH----hhcc
Q 007861 257 -GGLAPFGVKGIVDGAATVYFSYIGYDSVSTLA---EEIQNPSK---S-LPLGIVGSVLIVSLLYSLMALSL----CLMV 324 (587)
Q Consensus 257 -~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~---~E~k~p~r---~-ip~ai~~~~~~~~v~y~~~~~~~----~~~~ 324 (587)
.|-.|. ...+...+...-+....++...+-+ |+-.+.+| + --|....-..+..+...+.+.++ ....
T Consensus 150 ~~P~~p~-~~~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l 228 (358)
T PF01566_consen 150 VVPSIPG-PGSLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVL 228 (358)
T ss_pred cCCCCcc-hhHHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 011122 1112222222222222233222211 11111111 1 01222222222222222222221 1111
Q ss_pred -cC-CcccccchHHHHHHHhCh-hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Q 007861 325 -PY-NKILKDASFSMAFRNIGW-AWASNVVGAGASLGIVASLLVAMLGQARYLCVIG 378 (587)
Q Consensus 325 -~~-~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a 378 (587)
+. .+..+.+...+.++..-+ ++...++.++.+.+.+++..+...+.++.+...-
T Consensus 229 ~~~~~~~~~~~~~~~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 229 YPGGSEVETAAQAAQALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred cccccchhhHHHHHHHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 22 223333456666776666 7999999999999999999998888888765543
No 77
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.14 E-value=0.0089 Score=61.84 Aligned_cols=214 Identities=13% Similarity=0.141 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcch-hHHHHHHH----HHHH
Q 007861 202 FPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGV-KGIVDGAA----TVYF 276 (587)
Q Consensus 202 ~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~ 276 (587)
+..+++..+..++.+..-|...++-.+++-..++.++++++.++.+...+.-...+++....+ .++..|-. .+..
T Consensus 120 ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal 199 (427)
T PF05525_consen 120 IFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAAL 199 (427)
T ss_pred hhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHH
Confidence 566777788888999999999999999999999999988888877633221111111111111 12222111 1122
Q ss_pred hccchhhhhchhHhhcCcCCCcchHHHHHHHH----HHHHHHHHHHHHhhcccC--CcccccchHHHHHHHhChhHHHHH
Q 007861 277 SYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLI----VSLLYSLMALSLCLMVPY--NKILKDASFSMAFRNIGWAWASNV 350 (587)
Q Consensus 277 ~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~----~~v~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i 350 (587)
.|...-..+--....||+ |+..|.+..+-++ ..++|....+.-....+. ++.+....+..+.++.-|+.+..+
T Consensus 200 ~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~l 278 (427)
T PF05525_consen 200 AFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQIL 278 (427)
T ss_pred HHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHH
Confidence 222222222222333333 3444555444444 444455444432222221 122223456667777777999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHH-HHHHHHHHHhhhcHHHHHHHHHHHHH
Q 007861 351 VGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLF-LGLCTASIALFTELNIVLEMISISTL 429 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (587)
+.+.+.++|+++..+...++++.. .+..+ +.+++.... .++++.+++.+ .++.+.++..=...
T Consensus 279 l~iiv~lACLTTaIGL~~a~a~yf-------------~~~~~--kisY~~~v~i~~i~S~~ian~-Gl~~Ii~~s~PiL~ 342 (427)
T PF05525_consen 279 LGIIVFLACLTTAIGLISACAEYF-------------SELFP--KISYKVWVIIFTIFSFIIANL-GLDQIIKISVPILM 342 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhc--ccChHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 999999999999998888888754 44443 344444333 34445544443 57777776664444
Q ss_pred HHH
Q 007861 430 LVF 432 (587)
Q Consensus 430 ~~~ 432 (587)
+.|
T Consensus 343 ~iY 345 (427)
T PF05525_consen 343 FIY 345 (427)
T ss_pred HHh
Confidence 444
No 78
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.10 E-value=0.0006 Score=70.49 Aligned_cols=253 Identities=15% Similarity=0.104 Sum_probs=134.1
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
+++-+.+..+.-...+++|+|++..|-..- ..|.. .++.....+++.......+.+.+.+.++. -.-.-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk--~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFK--TAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHH--HhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 345677778888889999999999886654 46754 55566667777777788888888887765 333445566666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHH
Q 007861 146 FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSIL 225 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~ 225 (587)
..........-...+. +..+....++.+...........|... +.......+.+..+.++..+.+.. .. ..-+.
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~--~~~~~~~~ill~~~~~i~pLsl~k--~l-~~Lk~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGS--HYLDRNFLILLVLLFIILPLSLLK--NL-DSLKY 153 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhccccccccc--ccccceeEeehHHHHHHHHHHHHH--hh-hhHHH
Confidence 5422222111110000 011111111111111110000111000 000000001122222222222222 11 12233
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcch--hHHHHHHHHHHHhccchhhhhchhHhhcCcC-CCcchHH
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGV--KGIVDGAATVYFSYIGYDSVSTLAEEIQNPS-KSLPLGI 302 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~-r~ip~ai 302 (587)
....+...++.++.+.+......+. .........+.+. .+++.+++..+++|+.++....+-.|.|||+ |++.+..
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~ 232 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPC-ALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVS 232 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-ccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHH
Confidence 3344444433333333333222111 0011111222222 5689999999999999999999999999996 6788999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCcc
Q 007861 303 VGSVLIVSLLYSLMALSLCLMVPYNKI 329 (587)
Q Consensus 303 ~~~~~~~~v~y~~~~~~~~~~~~~~~~ 329 (587)
..+...+..+|......-+...+.+..
T Consensus 233 ~~~~~~~~~iy~~~g~~GYL~Fg~~v~ 259 (411)
T KOG1305|consen 233 NIAIILATLIYLLTGLFGYLTFGDLVK 259 (411)
T ss_pred HHHHHHHHHHHHHHHHhhhheecccch
Confidence 999999999999988877776665543
No 79
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.10 E-value=0.011 Score=63.30 Aligned_cols=284 Identities=13% Similarity=0.057 Sum_probs=148.0
Q ss_pred ccccChhHHHHHhhcc-ccc-ccchhccHhhhhhhcCchHHHHHHH----HHHHHHHHHHHHHHHhhccccCCchhhhHH
Q 007861 67 KRKLMWYDLVALGVGG-MLG-VGVFVTTGPVALQISGPSVFISYII----AGISALLSSLCYTEFSVQIPVAGGAFSYLR 140 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~-~ig-~gi~~~~~~~~~~~~G~~~~~~~ll----~~~~~~~~a~~~ael~s~~P~~GG~y~~~~ 140 (587)
.|+++.+ ..+++.+. ..+ ...+..++... ..|....+..+. ..+.....+--..+++ +.+..-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay--~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAY--ASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 5889988 55555543 344 44555556555 356553333322 3333444555566666 5555557899999
Q ss_pred HHhc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhh
Q 007861 141 VTFG-EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGT 219 (587)
Q Consensus 141 ~~~g-~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 219 (587)
+.|| +....+.+....+..+...+....+.+..++..++ .+. + ....+...........-|.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g-i~~--~--------------~~~~~~~~~v~~Yt~~gG~ 175 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG-ISY--V--------------TGILIGALIVALYTFLGGL 175 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCH--H--------------HHHHHHHHHHHHHHHHcCh
Confidence 9999 89999999999999999999999999988877766 221 0 0122223344445555667
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccc-cc----------ccCccCCCCCC-CcchhHHHH---HHHHHHHhccchhhh
Q 007861 220 KESSILNLIMTIFHVVFFGFIIIAGFCN-GS----------VQNLVKPGGLA-PFGVKGIVD---GAATVYFSYIGYDSV 284 (587)
Q Consensus 220 k~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~----------~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~G~e~~ 284 (587)
|...+...+=..+..+.+..+.+..... .+ .++.....++. +..+..... ........+...+..
T Consensus 176 ~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~ 255 (493)
T COG0591 176 RAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHIL 255 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhh
Confidence 7666665544444444433333322221 00 11100001111 111111111 111123333444444
Q ss_pred hchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHH-----hhcccC-C----cccccchHHHHHHHhChhHHHHHHHHH
Q 007861 285 STLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSL-----CLMVPY-N----KILKDASFSMAFRNIGWAWASNVVGAG 354 (587)
Q Consensus 285 ~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~-----~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~i~~~~ 354 (587)
.+.-. .|+++ +.||..........+.+++..+++ ...... + +.+.+..++......-.+|..-++...
T Consensus 256 ~r~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~a 333 (493)
T COG0591 256 PRFMA-AKSIK-SLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAA 333 (493)
T ss_pred hhhhh-hccHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHH
Confidence 44433 45553 345444443333333333332221 111111 1 123344566666777778888887777
Q ss_pred HHHHHHHHHHHHHHhhHHH
Q 007861 355 ASLGIVASLLVAMLGQARY 373 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~sR~ 373 (587)
++.+..++..+.....+-.
T Consensus 334 ilaAvmSt~ss~ll~~ss~ 352 (493)
T COG0591 334 ILAAVMSTASSQLLVASSA 352 (493)
T ss_pred HHHHHHHHHHHHHHhhhHH
Confidence 7777777776666665543
No 80
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.09 E-value=0.005 Score=62.98 Aligned_cols=295 Identities=14% Similarity=0.134 Sum_probs=148.9
Q ss_pred HHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccc-cCCchhhhHHHHhchhHHHHHH
Q 007861 74 DLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIP-VAGGAFSYLRVTFGEFVGYFAG 152 (587)
Q Consensus 74 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P-~~GG~y~~~~~~~g~~~g~~~g 152 (587)
..+.-++|+-+|.|-....+.....+||..-++-|++..+ .+-.-..++|++--.- +.+..-.|-+ ..+++.....|
T Consensus 13 GFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l-~~GiPlli~Ef~iGr~~~~~~~~a~~~-l~~~~~~~~~G 90 (439)
T COG0733 13 GFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLL-LVGIPLLLAEFAIGRRGRKNAVGAFRK-LAPKKKWEWIG 90 (439)
T ss_pred HHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHH-HHhHHHHHHHHHhhhhcCCChhHHHHH-hccCccchhhh
Confidence 3344566778999999898888877677665554544433 3333456677754332 2222222222 22222233334
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hCCCC--CCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhh-hHHH
Q 007861 153 ANILMEYVLSNAAVARSFTDYLCHA----VGEND--PNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKE-SSIL 225 (587)
Q Consensus 153 ~~~~l~~~~~~~~~~~~~~~~l~~~----~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~-~~~~ 225 (587)
|.-.+......+.|+...+=.+... .+... .........+..++.......-.++.++..++..+|+|. ..|.
T Consensus 91 ~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~ 170 (439)
T COG0733 91 WFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKKGIEKA 170 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence 4333333333333333222211111 11110 111111111111211112223344555566777888887 7888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccc----cCccCCCCCCCc-chhHHHHHHHHHHHhc-cchhhhhchhHhhcCcCCCcc
Q 007861 226 NLIMTIFHVVFFGFIIIAGFCNGSV----QNLVKPGGLAPF-GVKGIVDGAATVYFSY-IGYDSVSTLAEEIQNPSKSLP 299 (587)
Q Consensus 226 ~~~~~~~~i~~~~~~~i~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~G~e~~~~~~~E~k~p~r~ip 299 (587)
+.++.....+.++++.+-.+...+. +.+.. +++..- +...+..++.-++|+. .|+.....++...++ +.|++
T Consensus 171 ~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~-PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k-~~~l~ 248 (439)
T COG0733 171 NKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFK-PDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSK-KSDLV 248 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhc-CCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc-ccchh
Confidence 8888887777776666655442211 00000 011111 1344667777788877 588888888888877 46888
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhh---cccCCccccc-----chHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 007861 300 LGIVGSVLIVSLLYSLMALSLCL---MVPYNKILKD-----ASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQA 371 (587)
Q Consensus 300 ~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 371 (587)
+.-..........-++..+.+.. ....+ .+++ ..++.++++.+ ...++.+..+.+...+.++...+-=
T Consensus 249 ~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~-~~~GpgL~Fi~LP~if~~mp---~G~~~~~lFFl~l~fAalTS~iSml 324 (439)
T COG0733 249 SSALSIVLLNTLISLLAGLVIFPALFSFGAD-ASQGPGLVFIVLPAVFNQMP---LGTLFGILFFLLLLFAALTSAISML 324 (439)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CCCCCeeehhHHHHHHHhCc---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777766665555444432 22222 1111 24667777665 4455555555555555555544444
Q ss_pred HHHHH
Q 007861 372 RYLCV 376 (587)
Q Consensus 372 R~l~a 376 (587)
...-+
T Consensus 325 E~~va 329 (439)
T COG0733 325 EVLVA 329 (439)
T ss_pred HHHHH
Confidence 44443
No 81
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.06 E-value=0.02 Score=62.49 Aligned_cols=148 Identities=8% Similarity=-0.015 Sum_probs=88.8
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchH-H--HHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSV-F--ISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF 143 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~--~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 143 (587)
.|++++|.......++.++...+......... .|... + +++.++ ....++.+++.-++... -..++|.++.|
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 48899998877777777765555444333322 45432 2 222222 22344566666666543 35889999999
Q ss_pred c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhh
Q 007861 144 G-EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKES 222 (587)
Q Consensus 144 g-~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~ 222 (587)
| +....+++....+..+...+......+..++..++.. .+ ..+.+..++.......-|.|..
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~---~~--------------~~iii~~~i~~iYt~~GG~~aV 168 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVD---FE--------------TGVFIGMAIVFFYAVLGGMKGV 168 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---HH--------------HHHHHHHHHHHHHHHhhhHHHH
Confidence 8 4468888877777777777777777788888777611 11 0122222334445555678877
Q ss_pred HHHHHHHHHHHHHH
Q 007861 223 SILNLIMTIFHVVF 236 (587)
Q Consensus 223 ~~~~~~~~~~~i~~ 236 (587)
.+...+=.++.++.
T Consensus 169 ~~TD~iQ~iim~ig 182 (552)
T TIGR03648 169 TWTQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 77766555555443
No 82
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.05 E-value=0.026 Score=59.43 Aligned_cols=76 Identities=13% Similarity=0.120 Sum_probs=49.7
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHhhccc-cCC-chhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 100 SGPSVFISYIIAGISALLSSLCYTEFSVQIP-VAG-GAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHA 177 (587)
Q Consensus 100 ~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P-~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~ 177 (587)
-|...+|..+++.++.. .+-|++.+.- .+| |.-+-.++.+|+.++++......+..+.....+..+.+.-++.+
T Consensus 63 ~Gy~LLW~llls~~~~~----~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll 138 (439)
T PRK00701 63 FGYTLLWVILLSNLMAM----LLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLL 138 (439)
T ss_pred HCHHHHHHHHHHHHHHH----HHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445565555555544 4455555544 233 68888899999999888776666677777777776666666665
Q ss_pred hC
Q 007861 178 VG 179 (587)
Q Consensus 178 ~~ 179 (587)
++
T Consensus 139 ~g 140 (439)
T PRK00701 139 FG 140 (439)
T ss_pred hC
Confidence 55
No 83
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.03 E-value=0.033 Score=59.90 Aligned_cols=285 Identities=12% Similarity=0.066 Sum_probs=138.8
Q ss_pred ccccChhHHHHHhhcccccccchh-ccHhhhhhhcCchHHHHHHHHHHH-HHHHHHHHHHHhhccc----cCCchhhhHH
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFV-TTGPVALQISGPSVFISYIIAGIS-ALLSSLCYTEFSVQIP----VAGGAFSYLR 140 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~-~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~ael~s~~P----~~GG~y~~~~ 140 (587)
.|+++++....-..++.++...+. .++... . .|....+.. ++..+ .+...+.+++--+++. ..--.++|.+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y-~-~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALY-V-TGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHH-H-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 488888877665556555544444 344443 2 454322221 12222 2222333443333221 2234789999
Q ss_pred HHhch---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHh
Q 007861 141 VTFGE---FVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCH 217 (587)
Q Consensus 141 ~~~g~---~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (587)
+.+|+ ....+.+....+......+....+.+..++..++. + .+ ..+.+...+.......-
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi-~--~~--------------~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGL-D--YK--------------TGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-c--HH--------------HHHHHHHHHHHHHHHhh
Confidence 99984 45555555555555566677777777777777661 1 11 01222333445566667
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-cccC----cc--CC---CCCCCcchhHHHHHHHHHHHhccchhhhhch
Q 007861 218 GTKESSILNLIMTIFHVVFFGFIIIAGFCNG-SVQN----LV--KP---GGLAPFGVKGIVDGAATVYFSYIGYDSVSTL 287 (587)
Q Consensus 218 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~~~~----~~--~~---~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~ 287 (587)
|.|...+...+=.++.++..+++.+..+.+. +.++ .. ++ +.+.+..+..+...+.. ...+.|.....+-
T Consensus 175 Gl~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR 253 (487)
T TIGR02121 175 GFLAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVR 253 (487)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHH
Confidence 8888777776666665554443333322221 1110 00 00 11112222222222211 1122233333333
Q ss_pred hHhhcCcCCCcchHHHHHHHHHHHHHHHHH----HHHhh--cccCC-cccccchHHHHHHHhChhHHHHHHHHHHHHHHH
Q 007861 288 AEEIQNPSKSLPLGIVGSVLIVSLLYSLMA----LSLCL--MVPYN-KILKDASFSMAFRNIGWAWASNVVGAGASLGIV 360 (587)
Q Consensus 288 ~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~----~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 360 (587)
.--.||+ |+..|+...+.......++... ..... ..|.. ..+++..++...+....+++.-++...++.+..
T Consensus 254 ~~aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~m 332 (487)
T TIGR02121 254 FMAIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIM 332 (487)
T ss_pred HHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 3334665 5777887776544332222111 11111 11111 112334455555656667777777777788888
Q ss_pred HHHHHHHHhhHHH
Q 007861 361 ASLLVAMLGQARY 373 (587)
Q Consensus 361 ~~~~~~~~~~sR~ 373 (587)
++..+.+.+.+-.
T Consensus 333 ST~~s~l~s~ss~ 345 (487)
T TIGR02121 333 STISSQLLVSSSA 345 (487)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877777654
No 84
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.03 E-value=0.025 Score=58.44 Aligned_cols=71 Identities=15% Similarity=0.110 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccc-cCC-chhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 007861 109 IIAGISALLSSLCYTEFSVQIP-VAG-GAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVG 179 (587)
Q Consensus 109 ll~~~~~~~~a~~~ael~s~~P-~~G-G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~ 179 (587)
+...++..+..+..-|++.+.- .+| |.-.-.++.+++.++++......+..+...-++..+.+--++.+++
T Consensus 51 l~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ 123 (416)
T COG1914 51 LWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG 123 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333444445555555655554 233 4677778889999999888888888888888888888877877775
No 85
>PRK10484 putative transporter; Provisional
Probab=98.01 E-value=0.039 Score=59.91 Aligned_cols=295 Identities=15% Similarity=0.032 Sum_probs=138.0
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchh
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEF 146 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~ 146 (587)
.|+++++-..+-..++.++++.+......... .|...........+...+.++.++.--++. ..-..++|.++.+|+.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 58899998777777777766655544433322 454432111122222233444444332332 2235788999999987
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHH--HHHHHHHHHHhhhhhhH
Q 007861 147 VGYFAGANILMEYVLS-NAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVA--LVLLLTLCLCHGTKESS 223 (587)
Q Consensus 147 ~g~~~g~~~~l~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~k~~~ 223 (587)
.....+....+.+... .+......+..++..+.......+. ... ...+.++ ..+.......-|.|...
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~-------~~~--~~~~~~~~~~~i~~~Yt~~GGl~aV~ 185 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGIS-------YGA--AIWLLVWLIGIIGAIYAVFGGLKAVA 185 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCc-------HHH--HHHHHHHHHHHHHhhhhhhhhHHHHH
Confidence 7666666555555443 2222233333344433210000010 000 0011111 12234445556788877
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccc---------------cccCccCCCCC-CCcchhHHHHHHHHH-HHhccchhhhhc
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCNG---------------SVQNLVKPGGL-APFGVKGIVDGAATV-YFSYIGYDSVST 286 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~~---------------~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~G~e~~~~ 286 (587)
+...+=.++.++..+++.+..+... +++.+...++. .+.++...+.+.... ++.+.+-....+
T Consensus 186 ~TD~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~q 265 (523)
T PRK10484 186 VSDTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQ 265 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 7776666555554333322211110 01111100110 112233233333222 122222223334
Q ss_pred hhHhhcCcCCCcchHHHHHHHHHHHHHHHHHH---HHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Q 007861 287 LAEEIQNPSKSLPLGIVGSVLIVSLLYSLMAL---SLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASL 363 (587)
Q Consensus 287 ~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 363 (587)
-.=-.||+ |+..|+...+.....+.++...+ ......|.+..+++..++........+++.-++...++.+..++.
T Consensus 266 R~~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~ 344 (523)
T PRK10484 266 RALGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTF 344 (523)
T ss_pred HHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHH
Confidence 44445675 56788887776554444333221 111222322223345566666666667777777777777777777
Q ss_pred HHHHHhhHHH
Q 007861 364 LVAMLGQARY 373 (587)
Q Consensus 364 ~~~~~~~sR~ 373 (587)
.+.+.+.+-.
T Consensus 345 ~s~l~s~st~ 354 (523)
T PRK10484 345 NGFLNSASTL 354 (523)
T ss_pred HHHHHHHHHH
Confidence 7777766554
No 86
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.84 E-value=0.041 Score=58.27 Aligned_cols=348 Identities=12% Similarity=0.059 Sum_probs=150.6
Q ss_pred ccccChhHHHHHhhcccccccchhcc-----------HhhhhhhcCc--------------hHHHHHHHHHHHHHHHHHH
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTT-----------GPVALQISGP--------------SVFISYIIAGISALLSSLC 121 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~-----------~~~~~~~~G~--------------~~~~~~ll~~~~~~~~a~~ 121 (587)
|.++|.++-+++.++.-+|.|+..-. +... .++. ..+.+|.+-++..+..++.
T Consensus 72 kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~--~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~ 149 (485)
T PF02028_consen 72 KPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGI--EPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYF 149 (485)
T ss_dssp --SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT---TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCC--CCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhee
Confidence 45688888899999888887755331 1110 0111 1233455555555555555
Q ss_pred HHHHhhccccCCchhhhHHHHhchhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccC
Q 007861 122 YTEFSVQIPVAGGAFSYLRVTFGEFVGYFAGA----NILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGY 197 (587)
Q Consensus 122 ~ael~s~~P~~GG~y~~~~~~~g~~~g~~~g~----~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 197 (587)
+..-......+...|.-..+...+.+|.+.=. +...+...+.+......+.-++..++. +++..
T Consensus 150 ~y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi-~~~~~----------- 217 (485)
T PF02028_consen 150 FYNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGI-PNTFG----------- 217 (485)
T ss_dssp HHTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-SSTHH-----------
T ss_pred eeecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCC-CCchH-----------
Confidence 55522222233344444443333334444433 333444444455555556666666662 22111
Q ss_pred CcchHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHhhhccc----c---c----ccCcc----CCCC
Q 007861 198 NMLDFPAVALVLLLTLCLCHG----TKESSILNLIMTIFHVVFFGFIIIAGFCN----G---S----VQNLV----KPGG 258 (587)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~g----~k~~~~~~~~~~~~~i~~~~~~~i~~~~~----~---~----~~~~~----~~~~ 258 (587)
....+.+++.++.+.-...| +|..+++|..+....++.+ .+.+-.. . . .+|+. ..++
T Consensus 218 -~~~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~v---l~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~ 293 (485)
T PF02028_consen 218 -LQIIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFV---LLFGPTVFILNLFTESIGDYLQNFFRMSLWTDP 293 (485)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHH---HHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TT
T ss_pred -HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 11133333334444455555 4455555554444443333 2222110 0 0 01110 0122
Q ss_pred CCCcc-hhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhh-ccc-----CCccc-
Q 007861 259 LAPFG-VKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCL-MVP-----YNKIL- 330 (587)
Q Consensus 259 ~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~-~~~-----~~~~~- 330 (587)
....+ |.+-+.-+..+.|.-.+--....+++=-|. |+++--++..++...+...+.-..... ... ..++.
T Consensus 294 ~~~~~~w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~ 371 (485)
T PF02028_consen 294 FGNSGQWPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAA 371 (485)
T ss_dssp TTTTTHHHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHH
T ss_pred ccCcccccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHH
Confidence 33333 444444444444433333444455555555 788555555554444443332222221 111 11111
Q ss_pred --ccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHH--HH
Q 007861 331 --KDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFL--GL 406 (587)
Q Consensus 331 --~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~--~~ 406 (587)
++++-..+++....-++..++....++.++....+..-+.+..+-.++.+| +.+ -..+.+..|.. ++
T Consensus 372 ~~~~g~~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~e--p~~~~ri~W~~~~~~ 442 (485)
T PF02028_consen 372 ANEQGPEAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEE--PPRWLRIFWGLIIGA 442 (485)
T ss_dssp HHHH-HHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSS--S-HHHHHHHHHHHHH
T ss_pred HhhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCC--CchHHHHHHHHHHHH
Confidence 111222222222222344555555566666666667777777777777665 111 12333333322 33
Q ss_pred HHHHHHhhhcHH---HHHHHHHHHHHHHHHHHHHHHHHHh
Q 007861 407 CTASIALFTELN---IVLEMISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 407 ~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~r 443 (587)
++..+...+..+ .+..+.++...+...+.+.+.++.-
T Consensus 443 ~a~~ll~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k~l 482 (485)
T PF02028_consen 443 LAIVLLLIGGLDALQSASIIGGLPFSFVMLLMCISFIKAL 482 (485)
T ss_dssp HHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444 4444444555555555556655543
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.76 E-value=0.073 Score=55.24 Aligned_cols=170 Identities=9% Similarity=0.027 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCC-CCCCCcch-hHH------HHHHHH
Q 007861 202 FPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKP-GGLAPFGV-KGI------VDGAAT 273 (587)
Q Consensus 202 ~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~-~~~------~~~~~~ 273 (587)
+..+++..+..++.++.-|...++-++++-..++.++++++.++.+... ...++ +.+....+ .++ +-++..
T Consensus 124 ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g-~~~~~~~~y~~~~f~~Gf~eGY~TMDalaa 202 (439)
T PRK15433 124 IYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAG-SISTATEAYQNAAFSNGFVNGYLTMDTLGA 202 (439)
T ss_pred HHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCcchhhhhhhHHHHHHhhHHHHHHHHH
Confidence 5667777788889999999999999999999999998888888775321 11111 11111111 111 222222
Q ss_pred HHHhccchhhhhchhHhhcCcCCCcchHHHHH----HHHHHHHHHHHHHHHhhccc-CCcccccch-HHHHHHHhChhHH
Q 007861 274 VYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGS----VLIVSLLYSLMALSLCLMVP-YNKILKDAS-FSMAFRNIGWAWA 347 (587)
Q Consensus 274 ~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~----~~~~~v~y~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~ 347 (587)
..|+ ..-.-+--....||+ |++.|.+..+ .....++|....+.-....+ .++.++... .....+..-++++
T Consensus 203 l~Fg--~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G 279 (439)
T PRK15433 203 MVFG--IVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGG 279 (439)
T ss_pred HHHH--HHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHH
Confidence 2222 221112222334444 3344444444 34444445554443332222 111212222 2333345556899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q 007861 348 SNVVGAGASLGIVASLLVAMLGQARYLC 375 (587)
Q Consensus 348 ~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 375 (587)
..+..+.+.++|+++..+...++++...
T Consensus 280 ~~ll~iiv~lACLTTaIGLi~a~a~~f~ 307 (439)
T PRK15433 280 SFLLAALIFIACLVTAVGLTCACAEFFA 307 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888643
No 88
>PLN00151 potassium transporter; Provisional
Probab=97.73 E-value=0.011 Score=64.70 Aligned_cols=221 Identities=13% Similarity=0.090 Sum_probs=104.8
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccccccCccCCCCCCCc---------chhHH
Q 007861 200 LDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGF---CNGSVQNLVKPGGLAPF---------GVKGI 267 (587)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~---~~~~~~~~~~~~~~~~~---------~~~~~ 267 (587)
...+++++++.++.+--+|+...+++ ++-+.++=++.+...|+ .+.++.-+. .+.|. +.. -
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~~---FgPImllWFl~i~~iGiynI~~~~p~Vl~---AlnP~Y~~~Ff~~~~~~-g 346 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGFA---FGPALALWFCSLGGIGIYNLVKYDSSVFR---AFNPVYIYYFFKRNSTK-A 346 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHh---hhCHHHHHHHHHhCCCc-e
Confidence 34577777777778888887666654 44444443333333433 333333222 12221 111 1
Q ss_pred HHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHH
Q 007861 268 VDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWA 347 (587)
Q Consensus 268 ~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (587)
+..+..++.+.+|.|+...=-+.. .+|.+..|-..-+.-+.++.-+...+.....| ++ ..+|+. .... +++
T Consensus 347 w~~LGgVvLciTGaEALfADLGHF--g~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p-~~--~~npFy---~svP-~~~ 417 (852)
T PLN00151 347 WSALGGCVLCATGSEAMFADLGYF--SVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNP-DS--AEQIFF---SSVP-SSL 417 (852)
T ss_pred EEEecceeeeeccchhhhcccCCC--CccceeeeehhhHHHHHHHHHcchHHHHhcCc-cc--ccCcHH---HhCC-chh
Confidence 123445677889999855433333 33556555544333333332222222222222 22 123443 2232 333
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCCCC----cchHHHHHHHHHHHHHHhhhcHHHHH
Q 007861 348 SNVV-GAGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPSTG----TPLNATLFLGLCTASIALFTELNIVL 421 (587)
Q Consensus 348 ~~i~-~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~ 421 (587)
.+-+ .++.+.+++++ .+.+.++=-++...-+=|.+|+ ..-|.+++.+ .|..-.++......+...+.+-+.+.
T Consensus 418 ~wP~~vlAtlAaIIAS-QA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~ 496 (852)
T PLN00151 418 FWPVFLIANLAALIAS-RAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIG 496 (852)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHH
Confidence 3333 33333333333 3333333333333445579995 4555554433 47666655544444444556667777
Q ss_pred HHHHHHHHHHHHHHHH
Q 007861 422 EMISISTLLVFYLVAN 437 (587)
Q Consensus 422 ~~~~~~~~~~~~~~~~ 437 (587)
+.+.++.....++..+
T Consensus 497 ~AYGiAV~~vM~iTT~ 512 (852)
T PLN00151 497 NAYGIAEVGVMMVSTI 512 (852)
T ss_pred HHhhhhhhhhhhHHHH
Confidence 7777666655555443
No 89
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.66 E-value=0.0024 Score=67.79 Aligned_cols=171 Identities=16% Similarity=0.072 Sum_probs=90.0
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHhhccccCC-chhhhHHH
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS---VFISYIIAGISALLSSLCYTEFSVQIPVAG-GAFSYLRV 141 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~s~~P~~G-G~y~~~~~ 141 (587)
.+|+-++++.+.+=++..+....+..-.... . -|.+ ++++.+++.++........ +..-|+.| ......|.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~-~-~gL~~~~ailai~~G~~l~~i~~~~~---~~~G~r~Gl~~~v~sR~ 79 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGV-A-LGLSFWQAILAILIGNLLGAILVALM---GIIGPRTGLPTMVLSRA 79 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHH-C-CCS-HHHHHHHHHHHHHHHHHHHHHH---THHHHCC---HHHHTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-c-cCchHHHHHHHHHHHHHHHHHHHHHh---cccccccCCCchhcchh
Confidence 3566778888777666554433333322221 1 2332 5555555555544433333 44444445 45666777
Q ss_pred HhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccc-cccccCCcchHHHHHHHHHHHHHHHhhhh
Q 007861 142 TFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVD-GLFKGYNMLDFPAVALVLLLTLCLCHGTK 220 (587)
Q Consensus 142 ~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~k 220 (587)
.||.+...+......+..+...+......++.+....+...+. +. ..| ..........+..++..++.......|.|
T Consensus 80 ~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~ 157 (440)
T PF02133_consen 80 SFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGS-FL-WIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMK 157 (440)
T ss_dssp TS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------HH-----------HHHHHHHHHHHHHHCTHHH
T ss_pred ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-ch-hhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHH
Confidence 8999989999988888888888888888888888877632111 00 001 00000000112222333445566778888
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 007861 221 ESSILNLIMTIFHVVFFGFIIIA 243 (587)
Q Consensus 221 ~~~~~~~~~~~~~i~~~~~~~i~ 243 (587)
...+++.+......+..+.....
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~ 180 (440)
T PF02133_consen 158 ALRRLAVIAAPILLVVFIGMLIW 180 (440)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHhHHhhhhHHHHhhhhheeEE
Confidence 88888877766555554444333
No 90
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.34 E-value=0.23 Score=50.47 Aligned_cols=217 Identities=14% Similarity=0.129 Sum_probs=113.3
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcch-hHHHHHH----HHH
Q 007861 200 LDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGV-KGIVDGA----ATV 274 (587)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~ 274 (587)
..+..++...+..++++..-|...|+-.+++-.+++.++++.+..+.+.+.+.-...+...+..+ .|+..|- ..+
T Consensus 120 l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLA 199 (431)
T COG1114 120 LFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALA 199 (431)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHH
Confidence 34666777778888999999999999999999999998888887665433211110011111111 1111111 112
Q ss_pred HHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhh--cccCCccc---cc-chHHHHHHHhChhHHH
Q 007861 275 YFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCL--MVPYNKIL---KD-ASFSMAFRNIGWAWAS 348 (587)
Q Consensus 275 ~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~--~~~~~~~~---~~-~~~~~~~~~~~~~~~~ 348 (587)
..+|...-.-+--..-.+++ |+..|-.+.+-++..+.-.+.-..... ....+... ++ .-+.+..+..-|+.+.
T Consensus 200 al~FgivIv~alk~~g~~~~-~~~~~~~~~aglIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~ 278 (431)
T COG1114 200 ALAFGIVIVNALKSKGVTTK-KQIIKYTIKAGLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGS 278 (431)
T ss_pred HHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhH
Confidence 33333332222222333333 344455554444444332222222222 22221111 11 2334444566668888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHH
Q 007861 349 NVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISIST 428 (587)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 428 (587)
.+..+.+.++|+++..+...+++.. |+|+-||-.-..++++ ..+++.++.-. .++.+..+..=..
T Consensus 279 ~lL~~iv~lACLTTaiGLi~a~aef-------------F~~~~p~~SY~~~v~i-f~i~sflvan~-GL~~Ii~isvPvL 343 (431)
T COG1114 279 ILLGLIVFLACLTTAVGLIVACAEF-------------FSKLVPKLSYKTWVII-FTLISFLVANL-GLEQIIKISVPVL 343 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHhcccccHHHHHHH-HHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 9999999999999988887777764 5555543333333333 34444444433 4666666554333
Q ss_pred HHHH
Q 007861 429 LLVF 432 (587)
Q Consensus 429 ~~~~ 432 (587)
...|
T Consensus 344 ~~iY 347 (431)
T COG1114 344 TAIY 347 (431)
T ss_pred HHHh
Confidence 3333
No 91
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=97.29 E-value=0.19 Score=53.42 Aligned_cols=281 Identities=15% Similarity=0.084 Sum_probs=135.4
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--cccCccCCCCC------CCcchhHHHHHHH
Q 007861 201 DFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNG--SVQNLVKPGGL------APFGVKGIVDGAA 272 (587)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~~------~~~~~~~~~~~~~ 272 (587)
..+++++++.+..+-.+|+...++. +.-++++=++.+.+.|+.+. +++-+...+|. ..++.. -+..+.
T Consensus 133 v~it~~ILv~LF~iQ~~GT~~ig~~---FgPim~~WF~~l~~~G~~~I~~~p~Vl~A~nP~yai~f~~~~~~~-~~~~LG 208 (534)
T PF02705_consen 133 VPITIAILVGLFAIQRFGTAKIGKL---FGPIMLLWFLTLGVLGLYNIIQHPEVLKALNPYYAIRFFIRNGWI-GFFVLG 208 (534)
T ss_pred hhHHHHHHHHHHHHHhhhhhHHHHH---HhHHHHHHHHHHHHHHHHHHhhCHHHHHHhCHHHHHHHHHHcCCc-hhhhcc
Confidence 3567777777778888887776665 45555444444444444432 12111110111 011222 233455
Q ss_pred HHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHH-HHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHH
Q 007861 273 TVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLL-YSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVV 351 (587)
Q Consensus 273 ~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 351 (587)
..+.+.+|-|+.-.=-+.. .+|.+.++-..-+.-+.++ |+.-. +.....| +. ..+|+.... .+|+.+.+
T Consensus 209 ~V~L~~TGaEALyADmGHf--g~~~Ir~aw~~~V~PaL~LnY~GQg-A~ll~~p-~~--~~npFf~~~----P~~~~~p~ 278 (534)
T PF02705_consen 209 AVFLCVTGAEALYADMGHF--GRKPIRIAWFFLVFPALLLNYFGQG-ALLLSHP-EA--VSNPFFLLI----PEWLLWPM 278 (534)
T ss_pred hHHHHHhhHHHHHhhhccc--cchhhhhhHHHHHHHHHHHHHccHH-HHHHcCc-ch--hhhHHHHHh----HHHHHHHH
Confidence 6678889999865432322 2355555544422222222 33222 2222222 11 134554332 23554444
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCCC-C---cchHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 007861 352 GAGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPST-G---TPLNATLFLGLCTASIALFTELNIVLEMISI 426 (587)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~-~---~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (587)
.+.+.++..-+-.+...++=-+....-+-|.+|+ ...|.+++. | .|..-.++......+...+.+-+.+.+.+.+
T Consensus 279 ~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGi 358 (534)
T PF02705_consen 279 VILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKIVHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGI 358 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHH
Confidence 4444333333334444444445556667789995 344555333 2 4776666555555555556677788888877
Q ss_pred HHHHHHHHHHHH-HHHHhhhccCCCCCchhHHHHHHHH---HHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 007861 427 STLLVFYLVANA-LIYRRYVMISNNPPSHTLLFLFLLS---FCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFH 497 (587)
Q Consensus 427 ~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (587)
+......+..+. .+++|++.+ . +++....+..... +.....-+.=-++|+|+++.+.+.+..+...+-.
T Consensus 359 AVt~tM~iTT~L~~~v~~~~w~-~-~~~~~~~~~~~fl~id~~ff~anl~K~~~GGW~pl~ia~~l~~iM~tW~~ 431 (534)
T PF02705_consen 359 AVTGTMLITTILLFLVMRRVWK-W-PLWLALLFFLFFLVIDLLFFSANLLKFPHGGWFPLLIAAVLFTIMYTWRR 431 (534)
T ss_pred HHHHHHHHHHHHHHHHHHHhcC-C-cHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHH
Confidence 777776666553 344444421 1 1111111111111 1111111111223677777777666666665555
No 92
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.21 E-value=0.22 Score=54.87 Aligned_cols=281 Identities=12% Similarity=0.053 Sum_probs=127.0
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc---cccccCccCCCCCC------CcchhHHHHHH
Q 007861 201 DFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFC---NGSVQNLVKPGGLA------PFGVKGIVDGA 271 (587)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~------~~~~~~~~~~~ 271 (587)
..+++++++.++.+--+|+...++. ++-+.++=++.+.+.|+. +.+++-+...+|.. .++.. -+..+
T Consensus 215 v~is~~ILv~LF~iQ~~GT~kVg~~---FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~-g~~~L 290 (779)
T PLN00150 215 TIISCVILVILFSLQRFGTHKVSFL---FAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQ-GWESL 290 (779)
T ss_pred hhhHHHHHHHHHHHHhccchhhhhh---hccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCc-eEEEe
Confidence 4567777777778888887666654 444444444444444443 33332222111110 11111 12234
Q ss_pred HHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHH-HHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHH
Q 007861 272 ATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLL-YSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNV 350 (587)
Q Consensus 272 ~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 350 (587)
..++.+.+|.|+...=-+.. .+|.+.++-..-+.-+.++ |+.-. +.....| ++ ..+|+.. ... +++.+.
T Consensus 291 G~V~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~LlL~Y~GQa-A~ll~~p-~~--~~npFf~---~iP-~~~~~P 360 (779)
T PLN00150 291 GGIVLCMTGTEAMFADLGHF--TVKSMQIAFTSLVYPCLLLTYLGQA-AYLVKHM-ED--VNDPFYR---SLP-KPIYWP 360 (779)
T ss_pred cceeeeecchhhhhccccCC--CccceeeeehhhHHHHHHHHHcchH-HHHhcCc-cc--ccCcHHH---hCC-chhHHH
Confidence 45677889999854433333 3355655554333333333 33322 2222122 21 1244432 222 344443
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCCCC----cchHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 007861 351 VGAGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPSTG----TPLNATLFLGLCTASIALFTELNIVLEMIS 425 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (587)
+.+.+.++..-+-.+.+.++=.++...-+=|.+|+ ..-|.+++.+ .|..-.++......+...+.+-+.+.+.+.
T Consensus 361 ~~vlAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYG 440 (779)
T PLN00150 361 IFVLATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYG 440 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhh
Confidence 33333333222223333333333444445679995 4455554433 466665555444444444566677777777
Q ss_pred HHHHHHHHHHHH-HHHHHhhhccCCCCCchhHHHHHHHH---HHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 007861 426 ISTLLVFYLVAN-ALIYRRYVMISNNPPSHTLLFLFLLS---FCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFH 497 (587)
Q Consensus 426 ~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (587)
++......+..+ ..++++...+ .+++....+...+. ++.+...+.=-+.|+|+++.+.+++..+...+-+
T Consensus 441 iAV~~vM~iTT~L~~~v~~~~W~--~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~ 514 (779)
T PLN00150 441 IAVVGVMIITTCLMTLVMIIIWR--KHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGTVMYTWHY 514 (779)
T ss_pred hheehhhHHHHHHHHHHHHHHcC--ccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHHHH
Confidence 666555555443 3333333221 11121111111111 1111111122223778777776666666555544
No 93
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.06 E-value=0.48 Score=48.89 Aligned_cols=283 Identities=12% Similarity=0.083 Sum_probs=151.0
Q ss_pred HHHHHHHHHH-HHHHHHHHhhccccCCchhhh-HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q 007861 108 YIIAGISALL-SSLCYTEFSVQIPVAGGAFSY-LRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNS 185 (587)
Q Consensus 108 ~ll~~~~~~~-~a~~~ael~s~~P~~GG~y~~-~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (587)
+.+++...++ ..+..+|--+++-+-- .-++ ..|.-.+...++++....+...+.......+.+..+..+++ .+.
T Consensus 79 Y~iG~~~Gy~i~~fL~A~~LRk~GkyT-~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g-v~~-- 154 (529)
T COG4147 79 YSIGWTGGYPILLFLIAEYLRKLGKYT-FADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG-VPY-- 154 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcc-hHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC-CCc--
Confidence 3344433333 5677888877764322 2233 35556678888888888888888888888888888888887 211
Q ss_pred cccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc--c----------Cc
Q 007861 186 WRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSV--Q----------NL 253 (587)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~----------~~ 253 (587)
...+.++.++.......-|+|...|.|.+=.+..+...++..+....+.+. . ..
T Consensus 155 --------------~vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~ 220 (529)
T COG4147 155 --------------HVGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPK 220 (529)
T ss_pred --------------eeehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcc
Confidence 113445556666677778899999998877776666655544443332211 0 00
Q ss_pred cCCCCCCCcch--hHHHHHHHHHHHhccchhhhhchhHhh---cCcCCCcchHHHHHHHHHHHHHHHHHHHHhh----cc
Q 007861 254 VKPGGLAPFGV--KGIVDGAATVYFSYIGYDSVSTLAEEI---QNPSKSLPLGIVGSVLIVSLLYSLMALSLCL----MV 324 (587)
Q Consensus 254 ~~~~~~~~~~~--~~~~~~~~~~~~~~~G~e~~~~~~~E~---k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~----~~ 324 (587)
.++....+.|. .+.+..+...+--..|.-..+|+--.. ++. |+..|+..++......+|+..-+.-.+ +.
T Consensus 221 ~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~RFfTvp~~-k~AR~Sv~wA~~fIg~fYi~~~~ig~~A~~~v~ 299 (529)
T COG4147 221 DDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMRFFTVPDA-KEARKSVFWATGFIGIFYILTPIIGAGARLLVG 299 (529)
T ss_pred cCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEEEEecCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00001111111 112222333333334555555543221 221 456678889999999999875543221 11
Q ss_pred --cCC------------cccc-------cchHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHHHHHh----hHHHHHHhh
Q 007861 325 --PYN------------KILK-------DASFSMAFRNIG-WAWASNVVGAGASLGIVASLLVAMLG----QARYLCVIG 378 (587)
Q Consensus 325 --~~~------------~~~~-------~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~----~sR~l~a~a 378 (587)
|.. +... +.....+....+ ++|..-++....+...++...+...+ .||=+|+.-
T Consensus 300 t~~~~~p~w~~~w~~~~D~~~~gi~~~~n~a~vlaa~~i~~g~~v~g~vsAga~AtaLstaaGL~l~iasavsHDiY~~v 379 (529)
T COG4147 300 TNPVGKPAWAAKWIKTGDANGDGIGGWTNMAAVLAAPAIGGGPWVLGFVSAGAFATALSTAAGLLLVIASAVSHDLYAMV 379 (529)
T ss_pred cCCCCCcchhhcccccccccccccccccchHHHhhhHHhcCCceehhHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHH
Confidence 111 1110 112233344555 57777777777666666665555444 344444443
Q ss_pred hcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh
Q 007861 379 RARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF 414 (587)
Q Consensus 379 ~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 414 (587)
-|+. .++.. +-..-..++.+..+++..+...
T Consensus 380 ik~~----ase~~-~v~vaRi~~v~~~vva~~lgi~ 410 (529)
T COG4147 380 IKKG----ATEKK-EVRVARIAVVILGVVAILLGIL 410 (529)
T ss_pred hCCC----CCccc-eehhHHHHHHHHHHHHHHheec
Confidence 3322 22211 2333444555556666655554
No 94
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.89 E-value=0.64 Score=48.96 Aligned_cols=99 Identities=18% Similarity=0.160 Sum_probs=50.9
Q ss_pred HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC-CCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhh
Q 007861 337 MAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRAR-LVPTWLAKVHPSTGTPLNATLFLGLCTASIALFT 415 (587)
Q Consensus 337 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg-~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~ 415 (587)
.+++....-++..+..+..++....-..+...+++-++-.++..| .-|+..-|+- ++++ .++++..+.+.+
T Consensus 393 alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~v~-~~~ia~~lL~~g 464 (537)
T COG1292 393 ALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WGVL-IGLIAAVLLLIG 464 (537)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HHHH-HHHHHHHHHHhC
Confidence 344433333455555555555555555666677777777776655 3344444332 3333 455555555555
Q ss_pred cHHHHHHH---HHHHHHHHHHHHHHHHHHHh
Q 007861 416 ELNIVLEM---ISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 416 ~~~~l~~~---~~~~~~~~~~~~~~~~~~~r 443 (587)
.++.+-+. .++-+.+..++.+.++++.-
T Consensus 465 gl~aLqt~~ii~alPF~~vll~~~~sl~k~l 495 (537)
T COG1292 465 GLEALQTAAIITALPFSLVLLVMMFSLIKDL 495 (537)
T ss_pred CHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 55544443 33444455555566665533
No 95
>PLN00149 potassium transporter; Provisional
Probab=96.80 E-value=0.38 Score=53.14 Aligned_cols=280 Identities=12% Similarity=0.054 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcc---cccccCccCCCCCCCc---------chhHHHH
Q 007861 202 FPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFC---NGSVQNLVKPGGLAPF---------GVKGIVD 269 (587)
Q Consensus 202 ~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~---~~~~~~~~~~~~~~~~---------~~~~~~~ 269 (587)
.+++++++.++.+--+|+...++. ++-+.++=++.+...|+. +.+++-+. .+.|. +.. -+.
T Consensus 200 ~is~~ILv~LF~~Q~~GT~kvg~~---FgPIml~Wf~~i~~iGiyni~~~~p~Vl~---AlnP~y~~~f~~~~~~~-g~~ 272 (779)
T PLN00149 200 PVACIILIGLFALQHYGTHRVGFL---FAPVVLTWLLCISAIGVYNIFHWNPHVYQ---ALSPYYMYKFLKKTQRG-GWM 272 (779)
T ss_pred HHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHhHhh---hcCHHHHHHHHHHCCCc-eeE
Confidence 467777777777888887666554 444444444444444443 33333332 22221 111 122
Q ss_pred HHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHH-HHHHHHHHhhcccCCcccccchHHHHHHHhChhHHH
Q 007861 270 GAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLL-YSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWAS 348 (587)
Q Consensus 270 ~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (587)
.+..++.+.+|.|+...=-+.. .+|.+.+|-..-+.=+.++ |+.-. +.....|...-+-.+|+.. ... +++.
T Consensus 273 ~LGgV~L~iTG~EALyADlGHF--~~~~Ir~aw~~~V~P~L~L~Y~GQa-A~l~~~p~~~~~~~~pFy~---~iP-~~~~ 345 (779)
T PLN00149 273 SLGGILLCITGSEAMFADLGHF--SQLSIKIAFTSLVYPSLILAYMGQA-AYLSKHHVIESDYRIGFYV---SVP-EKLR 345 (779)
T ss_pred eecchhhcccchhhhhhcccCC--CccceeeeehhhHHHHHHHHhhhHH-HHHhcCcchhccccCcHHH---hCC-chhH
Confidence 3445678889999854433333 3356665555433333333 33332 2222222211111234432 222 3444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCCCC----cchHHHHHHHHHHHHHHhhhcHHHHHHH
Q 007861 349 NVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPSTG----TPLNATLFLGLCTASIALFTELNIVLEM 423 (587)
Q Consensus 349 ~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~ 423 (587)
+-+.+.+.++..-+-.+.+.++=.++...-+=|.+|+ ..-|.+++.+ .|..-.++......+...+.+-+.+.+.
T Consensus 346 ~P~~vlAtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~A 425 (779)
T PLN00149 346 WPVLVIAILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNA 425 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHH
Confidence 4333333333222223333333333334445579995 4445554333 3666655554444444445666777777
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhccCCCCCchhHHHHHHHH---HHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 007861 424 ISISTLLVFYLVAN-ALIYRRYVMISNNPPSHTLLFLFLLS---FCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFH 497 (587)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (587)
+.++......+..+ ..++++...+ . +.+....+...+. ++.+...+.=-++|+|+++.+.+++..+...+-+
T Consensus 426 YGiAV~~vM~iTT~L~~lv~~~~W~-~-~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~ 501 (779)
T PLN00149 426 SGLAVITVMLVTTCLMSLVIVLCWH-K-SVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLLVMYVWHY 501 (779)
T ss_pred hhhhhehHHHHHHHHHHHHHHHHcC-c-cHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 76666555555433 3333333221 1 1111111111111 1111111222233778777776666665555444
No 96
>PRK09950 putative transporter; Provisional
Probab=96.73 E-value=0.75 Score=48.98 Aligned_cols=93 Identities=14% Similarity=0.040 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcC-CCCcchHHHHHHHHHHHHHHhhhc-HHHHHHH
Q 007861 346 WASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHP-STGTPLNATLFLGLCTASIALFTE-LNIVLEM 423 (587)
Q Consensus 346 ~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~-~~~l~~~ 423 (587)
++..++....++.++....+..-+.+-.+-.++.+|.-+ +.|| |.+.=.+++.+ ++++..+...+. ++.+-++
T Consensus 399 P~~~i~~~l~~vl~~if~vTs~DS~s~vla~~ts~g~~~----~~~P~~~~ri~W~i~~-g~ia~~Ll~~gG~l~~lQ~~ 473 (506)
T PRK09950 399 PAGKLFLAAYLGIMIIFLASHMDAVAYTMAATSTRNLRE----GDDPDRGLRLFWCVVI-TLIPLSILFTGASLDTMKTT 473 (506)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHcCCCCC----CCCCCcchhHHHHHHH-HHHHHHHHHhCCcHHHHHHH
Confidence 355556666666666666667777777777766655322 1111 22222334443 333333434443 5544443
Q ss_pred ---HHHHHHHHHHHHHHHHHHHh
Q 007861 424 ---ISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 424 ---~~~~~~~~~~~~~~~~~~~r 443 (587)
.++...+...+.+.+.++.-
T Consensus 474 ~ii~alP~~~i~~l~~~s~~k~l 496 (506)
T PRK09950 474 VVLTALPFLVILLIKVYGFIRWL 496 (506)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555433
No 97
>PLN00148 potassium transporter; Provisional
Probab=96.66 E-value=0.29 Score=53.97 Aligned_cols=281 Identities=14% Similarity=0.042 Sum_probs=127.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhc---ccccccCccCCCCCC------CcchhHHHHH
Q 007861 200 LDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGF---CNGSVQNLVKPGGLA------PFGVKGIVDG 270 (587)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~---~~~~~~~~~~~~~~~------~~~~~~~~~~ 270 (587)
...+++++++.++.+--+|+...+++ ++-+.++=++.+...|+ .+.+++-+...+|.. .++.. -+..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~---FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~-g~~~ 272 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFM---FAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKD-GWIS 272 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCc-eEEe
Confidence 34567777777778888887666654 44444443444444443 333333332111110 11111 1223
Q ss_pred HHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHH-HHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHH
Q 007861 271 AATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLL-YSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASN 349 (587)
Q Consensus 271 ~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (587)
+..++.+.+|.|+...=-+.. .+|.+.++-..-+.-+.++ |+.-. +.....| ++ ..+|+.. ... +++.+
T Consensus 273 LGgV~L~iTGaEALyADlGHF--g~~~Iriaw~~~V~P~L~L~Y~GQa-A~ll~~p-~~--~~npFf~---~iP-~~~~~ 342 (785)
T PLN00148 273 LGGILLSITGTEAMFADLGHF--TAASIRLAFATVIYPCLVVQYMGQA-AFLSKNI-PS--IPNSFYD---SIP-DPVFW 342 (785)
T ss_pred ecchheeccchhhhhhhccCC--CccceEEeeeehHHHHHHHHHcchH-HHHhcCc-cc--ccCcHHH---hCC-chhHH
Confidence 445678889999854433333 3355665554433333333 33322 2222222 22 1344432 222 33434
Q ss_pred HHHHHH-HHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCCCC----cchHHHHHHHHHHHHHHhhhcHHHHHHH
Q 007861 350 VVGAGA-SLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPSTG----TPLNATLFLGLCTASIALFTELNIVLEM 423 (587)
Q Consensus 350 i~~~~~-~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~~----~P~~a~~~~~~~~~~~~~~~~~~~l~~~ 423 (587)
-+.+.+ +.++++| .+.+.++=-++...-+=|.+|+ ..-|.+++.+ .|..-.++......+...+.+-+.+.+.
T Consensus 343 P~~vlAtlAtIIAS-QA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~A 421 (785)
T PLN00148 343 PVFVIATLAAIVGS-QAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNA 421 (785)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHh
Confidence 333333 3333333 3333333333334445579995 4555554432 4766666555444445555566667776
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhhccCCCCCchhHHHHHHH---HHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 007861 424 ISISTLLVFYLVAN-ALIYRRYVMISNNPPSHTLLFLFLL---SFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFH 497 (587)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (587)
+.++......+..+ ..++++...+ . +.+....+...+ =++.+...+.=-+.|+|+++.+.+++..+...+-+
T Consensus 422 YGiAV~~vM~iTT~L~~lV~~~~W~-~-~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~iM~~W~~ 497 (785)
T PLN00148 422 YGLACMTVMFITTFLMALVIIFVWQ-K-SIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMSIMYIWHY 497 (785)
T ss_pred hhhheeeHHHHHHHHHHHHHHHHhC-c-cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 66665555444433 2333333221 1 112111111111 11111112222233778777776666666555544
No 98
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=96.59 E-value=1.1 Score=48.33 Aligned_cols=224 Identities=15% Similarity=0.101 Sum_probs=105.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--cccCccCCCCCC------CcchhHHHHHH
Q 007861 200 LDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNG--SVQNLVKPGGLA------PFGVKGIVDGA 271 (587)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~ 271 (587)
...+++++++.+..+-.+|+...++. ++-++++=++.+.+.|+.+. +++-+...+|.. .++.. -+..+
T Consensus 143 Vvpit~~ILv~LF~iQ~~GT~~vG~~---FgPIm~vWF~~i~~~Gi~~I~~~P~Vl~AlnP~ya~~f~~~~~~~-gf~~L 218 (622)
T PRK10745 143 IVPLSIIVLTLLFMIQKHGTGMVGKL---FAPIMLTWFLTLAVLGLRSIIANPEVLHALNPMWAVHFFLEYKTV-SFFAL 218 (622)
T ss_pred cHHHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHhCCCc-eEEEe
Confidence 33566777777777777887666654 45555444444444444432 222222111110 11111 11233
Q ss_pred HHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHH-HHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHH
Q 007861 272 ATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVS-LLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNV 350 (587)
Q Consensus 272 ~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~-v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 350 (587)
...+.+.+|-|+.-.=-+.. .+|.+.++-..-+.-+. +-|+.-...+. ..| +. ..+|+... ..+|+.+.
T Consensus 219 G~V~L~vTGaEALYADmGHF--G~~~Ir~aW~~~v~P~L~LnY~GQgA~ll-~~p-~~--~~NpFf~~----~P~~~~~p 288 (622)
T PRK10745 219 GAVVLAITGVEALYADMGHF--GKFPIRLAWFTVVLPSLVLNYFGQGALLL-KNP-EA--IKNPFFLL----APDWALIP 288 (622)
T ss_pred cceeeeccchHHHhhccCCC--CccceeeeehhhHHHHHHHHhcchHHHHh-cCc-hh--hcCcHHHh----CChhHHHH
Confidence 44567888988754333332 33556555444333232 33443332222 111 11 23555433 22444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCC-CC---cchHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 007861 351 VGAGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPS-TG---TPLNATLFLGLCTASIALFTELNIVLEMIS 425 (587)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~-~~---~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (587)
+.+.+.++..-+-.+...++=.+....-+=|.+|+ ...+.+++ .| .|..-.++......+...+.+-+.+.+.+.
T Consensus 289 ~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYG 368 (622)
T PRK10745 289 LLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRIIHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYG 368 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhh
Confidence 43333333333323333334344445556689995 44555544 22 366555544444444444556666777666
Q ss_pred HHHHHHHHHHHH
Q 007861 426 ISTLLVFYLVAN 437 (587)
Q Consensus 426 ~~~~~~~~~~~~ 437 (587)
++.-....+..+
T Consensus 369 iAVt~tM~iTT~ 380 (622)
T PRK10745 369 IAVTGTMVLTSI 380 (622)
T ss_pred hhheeHhHHHHH
Confidence 665555555443
No 99
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=96.56 E-value=0.18 Score=55.12 Aligned_cols=281 Identities=17% Similarity=0.091 Sum_probs=131.1
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc---cccCccCCCCCC------CcchhHHHHH
Q 007861 200 LDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNG---SVQNLVKPGGLA------PFGVKGIVDG 270 (587)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~ 270 (587)
...+++++++.++.+--+|+...++. ++-++++=++.+.+.|+.+. +++-+...+|.. .++.. -+..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~~---FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~-~~~~ 243 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGFT---FAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTV-GWVS 243 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhhh---hhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCc-eeee
Confidence 34567777777777888887666654 45555444444444444332 332222111110 11111 1223
Q ss_pred HHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHH-HHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHH
Q 007861 271 AATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSL-LYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASN 349 (587)
Q Consensus 271 ~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (587)
+...+.+.+|-|+.-.=-+.. -+|.+.++-..-+.-+.+ -|+.-...+ ...| +. ..+|+... ..+|+.+
T Consensus 244 LG~V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~l-l~~p-~~--~~NpFf~~----~P~~~~~ 313 (688)
T TIGR00794 244 LGGVVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYL-SKHP-EA--IKNPFFLS----IPDWALW 313 (688)
T ss_pred ccchhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHH-hcCc-ch--hcCcHHHh----CchHHHH
Confidence 445678889999854433333 235565554433322332 243332222 2122 22 13555433 2245544
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCCC-C---cchHHHHHHHHHHHHHHhhhcHHHHHHHH
Q 007861 350 VVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPST-G---TPLNATLFLGLCTASIALFTELNIVLEMI 424 (587)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~~-~---~P~~a~~~~~~~~~~~~~~~~~~~l~~~~ 424 (587)
.+.+.+.++..-+-.+...++=.+....-+=|.+|+ ...+.+++. | .|..-.++......+...+.+-+.+.+.+
T Consensus 314 p~~vlAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AY 393 (688)
T TIGR00794 314 PLFIIATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAY 393 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHh
Confidence 444433333333333344444344445556689995 445555442 2 36666555544444444556667777777
Q ss_pred HHHHHHHHHHHHH-HHHHHhhhccCCCCCchhHHHHHHHHHHHH----HHHHhhhhccccchhhHHHHHHHHHHHHHH
Q 007861 425 SISTLLVFYLVAN-ALIYRRYVMISNNPPSHTLLFLFLLSFCAI----CFSLSLKIQQQLWGLPLFGGLMLIVTAFFH 497 (587)
Q Consensus 425 ~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 497 (587)
.++......+..+ ..+++++..+ . +++....+. ...+..= ..-+.=-++|+|+++.+.+++..+...+-.
T Consensus 394 GiaVt~tM~iTT~L~~~v~~~~w~-~-~~~~~~~~~-~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~iM~~W~~ 468 (688)
T TIGR00794 394 GIAVTGTFLVTTCLMTVVMTIVWK-W-NIYFVALFL-LVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSVMTTWRY 468 (688)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHcC-c-cHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 7666666555544 3344443321 1 111111111 1111111 111111223778777777766666655544
No 100
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=96.41 E-value=0.036 Score=54.13 Aligned_cols=353 Identities=14% Similarity=0.089 Sum_probs=178.5
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHH----HHHHHHHhhcc--ccCCchhhhH
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLS----SLCYTEFSVQI--PVAGGAFSYL 139 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~----a~~~ael~s~~--P~~GG~y~~~ 139 (587)
-+.+++.+++.--.-..+-|.=+..+|-.+. .+|...+.+.+..+.....+ .-|+.|=...- -+---.|.-.
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~Avl--hGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVL--HGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeee--EcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 3456888888766666665544444443333 46665555544433332222 22333322100 0001134444
Q ss_pred HHH-hchhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCCCcccccccccccCCcchHHHHHHHHHHHHHH
Q 007861 140 RVT-FGEFVG-YFAGANILMEYVLSNAAVARSFTDYLCHAVGE--NDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCL 215 (587)
Q Consensus 140 ~~~-~g~~~g-~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (587)
.+. ++|.+| ..+..+..+.....+..+....++.+...++. .+...|. ++.-+.++-+. -
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm--------------~i~~a~LLpc~--F 254 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWM--------------MITSASLLPCS--F 254 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchh--------------hhhhHHHhhhH--H
Confidence 444 666665 66667778888888888888888988888862 2223332 33333333333 3
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcC
Q 007861 216 CHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPS 295 (587)
Q Consensus 216 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~ 295 (587)
+...|.++|+..+.++.+++.-++++...+.....-.|... .+ .-....+-..+..++|+|+..--.+++-+.+|||.
T Consensus 255 Lk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv-~F-sidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps 332 (524)
T KOG4303|consen 255 LKDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKV-TF-SIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPS 332 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeE-EE-EEEcccCceEEEEEEEeeeceeeccccccccCChh
Confidence 45778999999999998888777666665543221111100 00 00111122234456788988888899999999996
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHH-
Q 007861 296 KSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYL- 374 (587)
Q Consensus 296 r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l- 374 (587)
+ +-.-+-++-+...++=.............+... .+-+.+.++-...++++....-.+-+.---++++..++
T Consensus 333 ~-Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~Tqe------vItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe 405 (524)
T KOG4303|consen 333 Q-FNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQE------VITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLE 405 (524)
T ss_pred H-heeeeehHHHHHHHHHHHHHHheeeeechhhHH------HHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHH
Confidence 4 556667777777776655554444333322211 01122333334444554444433333333334443333
Q ss_pred ---HHhhhcCCCchHHh---hhcCCCCcchHHHHHHHHHHHHHHhh-hcHHHHHHHHH--HHHHHHHHHHHHHHHHHhhh
Q 007861 375 ---CVIGRARLVPTWLA---KVHPSTGTPLNATLFLGLCTASIALF-TELNIVLEMIS--ISTLLVFYLVANALIYRRYV 445 (587)
Q Consensus 375 ---~a~a~dg~lP~~~~---~~~~~~~~P~~a~~~~~~~~~~~~~~-~~~~~l~~~~~--~~~~~~~~~~~~~~~~~r~~ 445 (587)
|.=...-.+|...+ ++. .++.-.+-.++ +.+++.++. .-|.-+..+.. .+.+++|+.+++..++.+.|
T Consensus 406 ~nlF~g~p~t~Fpscys~Dg~Lk-~WgltlR~~lv--vfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~ 482 (524)
T KOG4303|consen 406 NNLFLGYPQTPFPSCYSPDGSLK-EWGLTLRIILV--VFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEK 482 (524)
T ss_pred HhhhcCCCCCCCceeeCCCcchh-hheeeeeeHHH--HHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHH
Confidence 21111112332211 111 23333332221 222222222 23444444432 34567888888877776655
Q ss_pred ccC
Q 007861 446 MIS 448 (587)
Q Consensus 446 ~~~ 448 (587)
.-+
T Consensus 483 ~L~ 485 (524)
T KOG4303|consen 483 TLN 485 (524)
T ss_pred hhh
Confidence 433
No 101
>PRK09928 choline transport protein BetT; Provisional
Probab=96.16 E-value=1.8 Score=47.61 Aligned_cols=91 Identities=12% Similarity=0.059 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHH---H
Q 007861 347 ASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLE---M 423 (587)
Q Consensus 347 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~---~ 423 (587)
+..++.+..++.++....+..-+.+-++-.++-+|.-|+ +..|+...=.+++++ ++++..+...+.++.+-+ +
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~i-g~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVAI-GLLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHHH-HHHHHHHHHhcCHHHHHHHHHH
Confidence 444554444555555555666666666666666553221 111122223344443 444444444455554444 3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 007861 424 ISISTLLVFYLVANALIY 441 (587)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~ 441 (587)
.++...+..++.+.++++
T Consensus 483 ~alPf~~I~ll~~~sl~k 500 (679)
T PRK09928 483 MGLPFSFVIFFVMAGLYK 500 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444555555556554
No 102
>COG4146 Predicted symporter [General function prediction only]
Probab=95.81 E-value=2.3 Score=42.44 Aligned_cols=232 Identities=15% Similarity=0.061 Sum_probs=110.5
Q ss_pred hhhhHHHHhchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHH
Q 007861 135 AFSYLRVTFGEFVGYFAGANILMEYV-LSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTL 213 (587)
Q Consensus 135 ~y~~~~~~~g~~~g~~~g~~~~l~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (587)
.-++.++.|++.-.-+...++.++|. +..+...++.+-.+++.|+..+. .++ +.....+.+...+-+.-+..
T Consensus 105 IPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v--~~I-----S~g~~i~~~viaiG~~g~~Y 177 (571)
T COG4146 105 IPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEV--LQI-----SHGAAIWLLVIAIGLAGILY 177 (571)
T ss_pred chHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhh--hCc-----CcchHHHHHHHHHHHHHHHH
Confidence 56788999999999998888888875 45667777777788888863221 111 11110000111111122333
Q ss_pred HHHhhhhhhHH---HHHHHHHHH--HHHHHHHHhhhcc----------cccccCccC-CCCCCCcchhHHHHHHHHHHHh
Q 007861 214 CLCHGTKESSI---LNLIMTIFH--VVFFGFIIIAGFC----------NGSVQNLVK-PGGLAPFGVKGIVDGAATVYFS 277 (587)
Q Consensus 214 ~~~~g~k~~~~---~~~~~~~~~--i~~~~~~~i~~~~----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 277 (587)
...-|.|..+- +|-+..++. +++++.++..+=. ..+.+.+.. .++..+.+|...+.++...-+.
T Consensus 178 ai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~F 257 (571)
T COG4146 178 AIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNTF 257 (571)
T ss_pred HHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhhee
Confidence 44456665443 333332222 2233333332210 011111111 1334456677778777665444
Q ss_pred ccch-hhhhc---hhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHH
Q 007861 278 YIGY-DSVST---LAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVG 352 (587)
Q Consensus 278 ~~G~-e~~~~---~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~ 352 (587)
|... +++.+ -+++.+.-+|-+-.+-..-+....++-+...++.-.. .++.+ +-.++....+.....+.-++.
T Consensus 258 YWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhly---gdL~~aDmaYP~LVn~VlPv~l~GFf~ 334 (571)
T COG4146 258 YWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLY---GDLPKADMAYPTLVNNVLPVPLVGFFG 334 (571)
T ss_pred eeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHh---ccCCccccccHHHHHhccchHHHHHHH
Confidence 4322 23333 3444555555544444433333333333333322221 12322 223444445555445555666
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHh
Q 007861 353 AGASLGIVASLLVAMLGQARYLCVI 377 (587)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~sR~l~a~ 377 (587)
...+-+.+++.+..+.+++- +|.+
T Consensus 335 AvLFGAilStFN~fLNSa~T-lf~~ 358 (571)
T COG4146 335 AVLFGAILSTFNGFLNSAST-LFSM 358 (571)
T ss_pred HHHHHHHHHHHHHHhhhhhH-Hhhh
Confidence 66666666666666655544 4443
No 103
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=95.62 E-value=2.8 Score=42.03 Aligned_cols=218 Identities=14% Similarity=0.187 Sum_probs=114.1
Q ss_pred hhhHH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHH
Q 007861 136 FSYLR-VTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLC 214 (587)
Q Consensus 136 y~~~~-~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (587)
.++.+ |.=+++..++++....+.+...+.+...+.+..+....++.+... ++ +--......-
T Consensus 109 ~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~gidY~tg----------------L~-ifa~~V~iYt 171 (473)
T COG4145 109 NDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETALGIDYTTG----------------LL-IFAVSVAIYT 171 (473)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHCCCchhh----------------HH-HHHHHHHHHH
Confidence 34443 345788999999999999999999999999999998887332211 11 1111122233
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-c-------ccCccCCCCCCCcchh-----HHHHH-HHHHHHhccc
Q 007861 215 LCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNG-S-------VQNLVKPGGLAPFGVK-----GIVDG-AATVYFSYIG 280 (587)
Q Consensus 215 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~-------~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~G 280 (587)
..-|.|.+...-.+=...+++..+++.+..+... + .++.+ ++-..|.+.. .+... .....+...|
T Consensus 172 ~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~iD-p~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlg 250 (473)
T COG4145 172 AFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTTID-PGLVTPQGADDILDPPFMASFWILVCFGVLG 250 (473)
T ss_pred hhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHhCC-ccccCCCCCcccccchHHHHHHHHHHHHHhc
Confidence 4456666655444444444444333333322211 1 11111 1111121111 12211 1223344445
Q ss_pred hhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhh---cccCCcccccchHHHHHHHhChhHHHHHHHHHHHH
Q 007861 281 YDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCL---MVPYNKILKDASFSMAFRNIGWAWASNVVGAGASL 357 (587)
Q Consensus 281 ~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 357 (587)
-.....-.-..||- |.+.++++++..+..++.+.+-.+-.. +.| |--..+.-.+..+-..-.|...-+...+.+.
T Consensus 251 lP~t~vr~ia~kDs-kaih~gmiigt~vi~il~~gmhl~G~~graViP-dlt~~D~Vip~lalkvlpp~~agifl~apma 328 (473)
T COG4145 251 LPHTAVRCIAFKDS-KAIHRGMIIGTIVIAILMLGMHLAGALGRAVIP-DLTVVDLVIPTLALKVLPPFAAGIFLAAPMA 328 (473)
T ss_pred CcHHHHHHHhccch-hHHhcCcchHHHHHHHHHHHHHHhhhhhhhhcC-CCCccchhHHHHHHHhcchHHHHHHHHHHHH
Confidence 44444444455674 778888888888887776655443221 223 2222333444455444445555566666666
Q ss_pred HHHHHHHHHHHhhHHH
Q 007861 358 GIVASLLVAMLGQARY 373 (587)
Q Consensus 358 ~~~~~~~~~~~~~sR~ 373 (587)
+..++.++.+.-.|-.
T Consensus 329 AiMSTIds~L~~~sst 344 (473)
T COG4145 329 AIMSTINSQLLQSSST 344 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777777776665543
No 104
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=95.18 E-value=5 Score=42.25 Aligned_cols=91 Identities=16% Similarity=0.072 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhc-HHHHHHHH-
Q 007861 347 ASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTE-LNIVLEMI- 424 (587)
Q Consensus 347 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~-~~~l~~~~- 424 (587)
+..++....++.++....+..-+.+-.+-.++.++.-++. + -+|...=.+++.+ +.++..+...+. ++.+-++.
T Consensus 354 ~~~i~~~l~~il~~if~vTs~DS~s~vla~~~s~~g~~~~--e-p~~~~ri~W~v~i-g~~a~~ll~~gG~l~~lQ~~~i 429 (453)
T TIGR00842 354 LGTITSALALIVIIIFFITSADSGALVLANTSSRGGQLGE--E-PPKWVRVFWAVAI-GLIALVLLFSGGSLAALQTTAI 429 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCCCCC--C-CCcccchHHHHHH-HHHHHHHHHhcCcHHHHHHHHH
Confidence 4455555555555555666666666666656443321100 0 1122233344443 334444444444 55444433
Q ss_pred --HHHHHHHHHHHHHHHHH
Q 007861 425 --SISTLLVFYLVANALIY 441 (587)
Q Consensus 425 --~~~~~~~~~~~~~~~~~ 441 (587)
++...+...+.+.++++
T Consensus 430 i~alP~~~i~~l~~~sl~k 448 (453)
T TIGR00842 430 IAALPFSLVMLVVMASLIK 448 (453)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 34444444444455443
No 105
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=94.84 E-value=6.7 Score=41.93 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHH---H
Q 007861 347 ASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLE---M 423 (587)
Q Consensus 347 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~---~ 423 (587)
+..++....++.++....+..-+.+-.+-.++-+|.-++. ..++.+.=.+++.+ ++++..+...+.++.+-+ +
T Consensus 403 l~~i~~~l~~il~~if~vTsaDS~t~vla~~ts~g~~~~~---~p~~~~ri~W~v~i-g~ia~~Ll~~GGl~~lQt~sii 478 (504)
T PRK03356 403 LSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGE---EPPLLVRIGWSILV-GIIGIVLLALGGLKPIQTAIIA 478 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHcCCCCCCC---CCCcchhhHHHHHH-HHHHHHHHHhcCHHHHHHHHHH
Confidence 4455555555555666666667777777777665532211 11122223344443 333334444444544443 3
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 007861 424 ISISTLLVFYLVANALIYRR 443 (587)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~r 443 (587)
.++...+...+.+.+.++.-
T Consensus 479 ~alPf~~i~~l~~~sl~k~l 498 (504)
T PRK03356 479 GGCPLFFVNIMVTLSFIKDA 498 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555433
No 106
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=94.62 E-value=2.3 Score=44.12 Aligned_cols=303 Identities=11% Similarity=0.084 Sum_probs=131.1
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCch---HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhH-
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS---VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYL- 139 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~- 139 (587)
+.-+|..|+|+-+.+=.+..++.+.+...+... + -|.. .+.+..++-++.......-+ +.|..|+-.
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l-~-lGLswwq~~~tv~vG~~~~~~f~~lns-------~~G~~yhIsF 120 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSAL-E-LGLSWWQTWITVWVGYLFTAIFLVLNS-------RPGSDYHISF 120 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHH-h-ccCCHHHHHHHHHHHHHHHHHHHHHcc-------CCCcccccce
Confidence 345677999999888777777666666666655 2 4542 45555555444433332222 234444432
Q ss_pred ----HHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hCCCC-CCCcccccccccccCCcchHHHHHHHHH
Q 007861 140 ----RVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHA----VGEND-PNSWRVEVDGLFKGYNMLDFPAVALVLL 210 (587)
Q Consensus 140 ----~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (587)
+..||-+..-.--..-.+.-+..-...+...++.++.+ ++... .+++.. -++.+ +-.++...+.++
T Consensus 121 pv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl~-~~~~t----t~e~i~FfIFwv 195 (572)
T KOG2466|consen 121 PVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTLG-KPGTT----TYEFIGFFIFWV 195 (572)
T ss_pred eeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCccccC-CCCCc----hHHHHHHHHHHH
Confidence 22344333222222233333334444444445544433 33110 011110 01111 112333333333
Q ss_pred HH-HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccc-cCccCCCCCCCcc---hhHHHHHHHHHHHhc-cchhhh
Q 007861 211 LT-LCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSV-QNLVKPGGLAPFG---VKGIVDGAATVYFSY-IGYDSV 284 (587)
Q Consensus 211 ~~-~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~G~e~~ 284 (587)
+. ....++.....++..+-.+....+.+.+.+....+++- .+.... +....+ .+.+..++...+-.| ++.-..
T Consensus 196 ~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~-~st~~gs~~aWa~~~~i~~~~~~fstl~~N~ 274 (572)
T KOG2466|consen 196 ASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDS-KSTVSGSAHAWAFVRSIMSCIANFSTLIVNA 274 (572)
T ss_pred HhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccC-CCcccccchhHHHHHHHHHHHhccchhhccC
Confidence 33 33455666666666666666655556666665554432 222111 111111 222444443333222 344445
Q ss_pred hchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccccc---chHHHHHH-------HhChhHHHHHHHHH
Q 007861 285 STLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKD---ASFSMAFR-------NIGWAWASNVVGAG 354 (587)
Q Consensus 285 ~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~~~~~~~~~i~~~~ 354 (587)
+..+.-.|+|. +.+.+-+.++.+...+..+..++.. ...+.+-.. +|+. +++ ..|...+..++.+.
T Consensus 275 pDFsRF~ksp~-a~~~~Ql~alp~~~~l~~liGVlv~--sa~~~iYG~~~W~Pld-il~~~l~~~y~~G~RAgvFfi~~~ 350 (572)
T KOG2466|consen 275 PDFSRFAKSPN-AIWWGQLIALPLPFGLTPLIGVLVT--SASKIIYGTNYWSPLD-ILNQWLDTNYSAGARAGVFFIGFG 350 (572)
T ss_pred chhHhhcCCCC-ccchhhhhhhhhhhhhhhheeeEeh--hhhhhhhcccccCHHH-HHHHHhccccccccchhhhHHHHH
Confidence 55555566663 2344443333332222211111111 011111111 2332 222 23445666677777
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhh
Q 007861 355 ASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAK 389 (587)
Q Consensus 355 ~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~ 389 (587)
..++.++...+.-. +..+..-.+++||++.-
T Consensus 351 f~laql~~NISan~----vaagnDl~~L~PkyinI 381 (572)
T KOG2466|consen 351 FALAQLGTNISANS----VAAGNDLSALLPKYINI 381 (572)
T ss_pred HHHHHHhcchhccc----cccchhhHhhCcceEEe
Confidence 77776666433211 11223333567776654
No 107
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=92.81 E-value=15 Score=39.06 Aligned_cols=230 Identities=14% Similarity=0.103 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--cccCccCCCCCC------CcchhHHHHHH
Q 007861 200 LDFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNG--SVQNLVKPGGLA------PFGVKGIVDGA 271 (587)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~--~~~~~~~~~~~~------~~~~~~~~~~~ 271 (587)
...+++++++.++.+-.+|+...+|+ +.-++++=++.+...|+.+. +++-+..-+|.. ..++.++ ..+
T Consensus 148 Vvpitl~IL~~LF~iQ~~GT~~Vg~~---FGPVm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf-~vL 223 (627)
T COG3158 148 VVPITLIILVLLFLIQRFGTGRVGKL---FGPVMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGF-FVL 223 (627)
T ss_pred cHHHHHHHHHHHHHHhcccchhhhhh---hccHHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEE-EEe
Confidence 33566777777777888887766664 55555555555555555542 222222111110 0111111 012
Q ss_pred HHHHHhccchhhhhchhHhhcC-cCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCccc-ccchHHHHHHHhChhHHHH
Q 007861 272 ATVYFSYIGYDSVSTLAEEIQN-PSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKIL-KDASFSMAFRNIGWAWASN 349 (587)
Q Consensus 272 ~~~~~~~~G~e~~~~~~~E~k~-p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 349 (587)
...+.+.+|-|+.-. |+-+ -+|.+.+|=..-. .=.++.++.-++..--.+.. ..+|+... .. +|...
T Consensus 224 GaVfLavTGaEALYA---DmGHfGr~pI~~AWf~vv----~P~L~LNY~GQGA~vL~~p~a~~npFF~~---~P-~~ali 292 (627)
T COG3158 224 GAVFLAVTGAEALYA---DMGHFGRKPIRVAWFFVV----LPCLLLNYFGQGALLLSNPEAIGNPFFLL---AP-DWALI 292 (627)
T ss_pred eeeeeeeccHHHHHh---hccccCCccHHHHHHHHH----HHHHHHHHccccceeccCcccccCcHHHh---Ch-hhHHH
Confidence 234567788886432 3322 2344433322221 11222333222211111111 23454332 22 33322
Q ss_pred HHH-HHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCch-HHhhhcCC-CC---cchHHHHHHHHHHHHHHhhhcHHHHHHH
Q 007861 350 VVG-AGASLGIVASLLVAMLGQARYLCVIGRARLVPT-WLAKVHPS-TG---TPLNATLFLGLCTASIALFTELNIVLEM 423 (587)
Q Consensus 350 i~~-~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~-~~~~~~~~-~~---~P~~a~~~~~~~~~~~~~~~~~~~l~~~ 423 (587)
-+. ...+...++| .+...++=-+....-|-|++|+ ...+.+++ .| .|..-.++...+.+++..+..-+.+.+.
T Consensus 293 P~viLAT~ATVIAS-QAvISGaFSLtrQAi~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaA 371 (627)
T COG3158 293 PLVILATAATVIAS-QAVISGAFSLTRQAIRLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAA 371 (627)
T ss_pred HHHHHHHHHHHHHH-HHHHhhHhHHHHHHHHhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHh
Confidence 222 2222222222 2222222223334556789995 34444433 23 4766665555555545555555666666
Q ss_pred HHHHHHHHHHHHHH-HHHHHhhh
Q 007861 424 ISISTLLVFYLVAN-ALIYRRYV 445 (587)
Q Consensus 424 ~~~~~~~~~~~~~~-~~~~~r~~ 445 (587)
+.++.-....+..+ ...++|++
T Consensus 372 YGiAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 372 YGIAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred hChheeehhHHHHHHHHHHHHHh
Confidence 55554444444433 33444443
No 108
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=91.12 E-value=26 Score=38.09 Aligned_cols=103 Identities=15% Similarity=0.201 Sum_probs=53.3
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc----ccCccCCCCCCCc-chhHHHHHHHHHHHhc-cchhhhhc
Q 007861 213 LCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGS----VQNLVKPGGLAPF-GVKGIVDGAATVYFSY-IGYDSVST 286 (587)
Q Consensus 213 ~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~G~e~~~~ 286 (587)
.....|+|..+|+.......-.+.++++.+-++...+ .+.+..+ .+... ...-+..++.-+++++ .|......
T Consensus 193 ~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~p-d~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 193 FGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTP-DWSKLLDPKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB--TTGTTSHHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred HheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecC-CcchhhHHHHHHHHHHHHhhccCCCcceEEE
Confidence 3445788888887766554333333333333322111 0111111 11111 1233566777778877 57888888
Q ss_pred hhHhhcCcCCCcchHHHHHHHHHHHHHHHHH
Q 007861 287 LAEEIQNPSKSLPLGIVGSVLIVSLLYSLMA 317 (587)
Q Consensus 287 ~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~ 317 (587)
++.-.|+ ++|++|.............++..
T Consensus 272 ~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag 301 (523)
T PF00209_consen 272 YGSYNKF-KNNIFRDALIVAFINTLVSLLAG 301 (523)
T ss_dssp HHTTS-T-TS-SHHHHHHHHHHHHHHHHTTG
T ss_pred EcCcCCC-CccccccceEEEcCchhhhHhHH
Confidence 8888776 46788877766666665554433
No 109
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=87.22 E-value=40 Score=35.00 Aligned_cols=42 Identities=10% Similarity=-0.075 Sum_probs=29.3
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007861 335 FSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCV 376 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (587)
....++..-+++...++.++.+.+-.++..+..++..=+...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~g 323 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEG 323 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 334445555678888898888888888888887765544443
No 110
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=85.34 E-value=0.23 Score=47.06 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhhcccc
Q 007861 461 LLSFCAICFSLSLKIQQQL 479 (587)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~ 479 (587)
+++.+++.+...|.+.+..
T Consensus 86 ilimi~lLv~~L~tLtGQ~ 104 (381)
T PF05297_consen 86 ILIMIVLLVSMLWTLTGQT 104 (381)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHhhccH
Confidence 3444555666677777654
No 111
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=85.01 E-value=68 Score=35.53 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=38.2
Q ss_pred ChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHH----HHHHHHHHHHHHhhc
Q 007861 71 MWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGI----SALLSSLCYTEFSVQ 128 (587)
Q Consensus 71 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~----~~~~~a~~~ael~s~ 128 (587)
+..+.+...++..+|.|=+...+....++||.+.++-|++..+ -.+..-++++++.++
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~ 100 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQ 100 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcC
Confidence 6677788889999999988877777777677665555544333 333344445554444
No 112
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=84.84 E-value=31 Score=36.51 Aligned_cols=50 Identities=16% Similarity=0.159 Sum_probs=33.0
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhhhhc
Q 007861 504 SHPTGWSVPFMPWPAAISIFLNVFLMTTLK----LLSYQRFAMWTCLITLFYVLYG 555 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 555 (587)
..++++|+|. ..|..-++.++++...-. .....+....++.|+.+|++.-
T Consensus 387 ~~~rPiKvpl--~~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i 440 (479)
T KOG1287|consen 387 PLPRPIKVPL--FIPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFI 440 (479)
T ss_pred CCCCCEeeee--ehHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEE
Confidence 3778899988 677788888887765321 2224455556667887776653
No 113
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=84.43 E-value=28 Score=37.79 Aligned_cols=224 Identities=15% Similarity=0.081 Sum_probs=108.0
Q ss_pred chhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHH-HHH
Q 007861 134 GAFSYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVL-LLT 212 (587)
Q Consensus 134 G~y~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 212 (587)
..|.|.+..|++....+....+.+..+.......+.-+..+++..+..- .+..+++.. ...
T Consensus 109 ~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~------------------~l~~~~~~~ic~~ 170 (585)
T KOG2349|consen 109 TMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINL------------------YLIVVILGLICVF 170 (585)
T ss_pred ehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCc------------------eeehHHHHHHHHH
Confidence 5799999999988666666666666666666555555556665554110 011122222 233
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccc-c------------cCcc---CCCCCCCcchhHHHHHHHHHHH
Q 007861 213 LCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGS-V------------QNLV---KPGGLAPFGVKGIVDGAATVYF 276 (587)
Q Consensus 213 ~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~------------~~~~---~~~~~~~~~~~~~~~~~~~~~~ 276 (587)
.-.+-|+|..-+.-.+=+.+++...+.+.+.+..+.. . .++. +.++.....++.++.+......
T Consensus 171 YT~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l 250 (585)
T KOG2349|consen 171 YTALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWL 250 (585)
T ss_pred HHHhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHH
Confidence 3344566666555555555566666666655543211 0 0111 0111111122335555445455
Q ss_pred hccchhh-hhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhh-------cccCC--ccc-ccchHHHHHHHhCh-
Q 007861 277 SYIGYDS-VSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCL-------MVPYN--KIL-KDASFSMAFRNIGW- 344 (587)
Q Consensus 277 ~~~G~e~-~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~-------~~~~~--~~~-~~~~~~~~~~~~~~- 344 (587)
++.|.+. ..+----.|+ .|...++++.......+...+....-.. +.|.. ... ++.-.+.......+
T Consensus 251 ~~~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~ 329 (585)
T KOG2349|consen 251 SYYGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGH 329 (585)
T ss_pred HHHhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCC
Confidence 5555554 3333333333 2455666666666555554443322111 11100 111 12223333333333
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 007861 345 -AWASNVVGAGASLGIVASLLVAMLGQARYLCV 376 (587)
Q Consensus 345 -~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a 376 (587)
+.+.-++...++-+.++++.+.+.+.|-+.+.
T Consensus 330 ~pGl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 330 LPGLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CCCccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 34444555555566666666677776666554
No 114
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=83.00 E-value=47 Score=35.92 Aligned_cols=61 Identities=16% Similarity=0.264 Sum_probs=32.1
Q ss_pred CCCCcccccccc----HHHHHHHHHHHHHHhcC----------ChHHHHH--HHHHHHHHHHHhhhhccccchhhhh
Q 007861 504 SHPTGWSVPFMP----WPAAISIFLNVFLMTTL----------KLLSYQR--FAMWTCLITLFYVLYGVHSTYEAEE 564 (587)
Q Consensus 504 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (587)
..+++||+|..+ +...++++.+++.++.. ....+.. .++..+..++-+..|.+|+|+...+
T Consensus 391 ~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 467 (507)
T TIGR00910 391 DLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDKKGHAN 467 (507)
T ss_pred CCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc
Confidence 356678887654 44555655555554421 1112222 2233444556677787777665443
No 115
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=79.50 E-value=11 Score=38.91 Aligned_cols=49 Identities=12% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhh
Q 007861 358 GIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFT 415 (587)
Q Consensus 358 ~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~ 415 (587)
+.++++....++.|+.+...=-|+.-||.|--. .+++++++.+++.+..
T Consensus 67 G~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~---------gLilsai~nil~Gfs~ 115 (448)
T COG2271 67 GILGSAFSITYGVSKFVMGVLSDRSNPRYFMAF---------GLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCCceeehH---------HHHHHHHHHHHHhhhh
Confidence 345666777889999998887786655433332 3555666666655543
No 116
>PTZ00206 amino acid transporter; Provisional
Probab=77.81 E-value=1e+02 Score=32.90 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=43.2
Q ss_pred chHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHh
Q 007861 333 ASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLA 388 (587)
Q Consensus 333 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~ 388 (587)
..+.++.+...++++..++.+..++.+++...+++...+..+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 45777777766789999999999999999999999998888776654433455544
No 117
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=76.57 E-value=93 Score=31.74 Aligned_cols=102 Identities=13% Similarity=-0.050 Sum_probs=63.3
Q ss_pred cChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHH
Q 007861 70 LMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVG 148 (587)
Q Consensus 70 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g 148 (587)
.+.+-++..=+.++.|.|-...|-..+ .-|+. +++..++++++.-.+-=..+-+.|.--+.-+.-+-+++..||..+
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa--~~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~ 129 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAA--QFGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAK 129 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHH--HhcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHH
Confidence 344455566667777888777776554 46765 666666666665554333333333333333667788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 007861 149 YFAGANILMEYVLSNAAVARSFTDY 173 (587)
Q Consensus 149 ~~~g~~~~l~~~~~~~~~~~~~~~~ 173 (587)
.+..+..++..+...+.-....++.
T Consensus 130 ~lf~~f~~~~lilV~avF~~v~a~~ 154 (376)
T PF02554_consen 130 KLFLIFIFFLLILVIAVFADVVANT 154 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888777776666655554444333
No 118
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=74.73 E-value=1.4e+02 Score=32.74 Aligned_cols=47 Identities=6% Similarity=-0.042 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhccc
Q 007861 201 DFPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCN 247 (587)
Q Consensus 201 ~~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~ 247 (587)
......++.+...+|+.|+|..+..+......|++.++.+++.+++.
T Consensus 156 ~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~Il~iVi 202 (554)
T KOG1286|consen 156 GGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFIILAIVI 202 (554)
T ss_pred CccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHHhheee
Confidence 45566778888999999999999999999999999998888887664
No 119
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=73.35 E-value=1.1e+02 Score=31.09 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=24.0
Q ss_pred hhchhHhhcCcCCC----cchHHHHHHHHHHHHHHHHHHH
Q 007861 284 VSTLAEEIQNPSKS----LPLGIVGSVLIVSLLYSLMALS 319 (587)
Q Consensus 284 ~~~~~~E~k~p~r~----ip~ai~~~~~~~~v~y~~~~~~ 319 (587)
....++++.++++| -|+++.++++.+.-.-++...+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~ 67 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAI 67 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777666 7888888887776655544443
No 120
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=72.59 E-value=77 Score=28.93 Aligned_cols=132 Identities=15% Similarity=0.204 Sum_probs=60.9
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHH--HHHHhhhccCCCCCchhHHHHHHHHHHHHHHH
Q 007861 393 STGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANA--LIYRRYVMISNNPPSHTLLFLFLLSFCAICFS 470 (587)
Q Consensus 393 ~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (587)
..+.|.+...+.+++..++..+.-++...+.......+-..+.... .+....+.+... .++...+.-...+.+...
T Consensus 14 ~l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~~lli~Gi~~ii~af~~r~~~--~~W~lll~Gil~i~~gil 91 (185)
T COG3247 14 MLKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGILLLISGIIEIISAFGNRSDN--SFWPLLLSGILSILLGIL 91 (185)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cchHHHHHHHHHHHHHHH
Confidence 3456777888888888888777656666655555554443333322 222222222222 233323333344444444
Q ss_pred HhhhhccccchhhHHHHHHHHHHHHHH----hhccCCCCCCccccccccHHHHHHHHHHHHHHhc
Q 007861 471 LSLKIQQQLWGLPLFGGLMLIVTAFFH----YSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTT 531 (587)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (587)
..+.+.-....+...-.+|..+..++. ++.++ ...+ .++...-.+++++.+.++.+
T Consensus 92 ~~~~~~~~~~~l~~lia~~~i~~GI~ri~~~~~~~~---~~G~--~w~ii~Gvl~ii~g~ill~~ 151 (185)
T COG3247 92 AGFNPGLGALVLTYLIAIWFIASGILRIVVAFRLRS---LPGW--WWMIISGVLGIIAGLILLFN 151 (185)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---cCCc--HHHHHHHHHHHHHHHHHHHc
Confidence 444443222233333333333333333 22121 1121 23344456666666666666
No 121
>PRK15049 L-asparagine permease; Provisional
Probab=71.64 E-value=1.5e+02 Score=31.93 Aligned_cols=20 Identities=10% Similarity=-0.152 Sum_probs=11.4
Q ss_pred chhhHHHHHHHHHHHHHHhh
Q 007861 480 WGLPLFGGLMLIVTAFFHYS 499 (587)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~ 499 (587)
+..++++++++++..+..++
T Consensus 423 p~~~~~~l~~~~~~~~~~~~ 442 (499)
T PRK15049 423 PFTSWLTLLFLLSVLVLMAF 442 (499)
T ss_pred cHHHHHHHHHHHHHHHHHHH
Confidence 44556666666555555554
No 122
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=64.29 E-value=1.5e+02 Score=29.04 Aligned_cols=102 Identities=14% Similarity=-0.021 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcH-----HHHHHHH
Q 007861 350 VVGAGASLGIVASLLVAMLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALFTEL-----NIVLEMI 424 (587)
Q Consensus 350 i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~-----~~l~~~~ 424 (587)
++........+.........+.|.+- |.|.-.+.+.+.+ +.+.|.+.++...+...+....... +.+..=.
T Consensus 160 ~~P~~~~i~~~~~~~~~~~l~~~il~---r~~~~~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~~Nl 235 (290)
T PF09991_consen 160 LFPALLIISALLMSLINYYLARRILR---RLGIPIPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIGLNL 235 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCCCCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHHHHH
Confidence 33333333333333344444455443 3333223333444 5778988887654443333332211 1222212
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCCCCchh
Q 007861 425 SISTLLVFYLVANALIYRRYVMISNNPPSHT 455 (587)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 455 (587)
.......|.+..++.+...-++++.++.++.
T Consensus 236 ~~v~~~l~~~qGla~~~~~~~~~~~~~~~~~ 266 (290)
T PF09991_consen 236 LIVLSFLFFIQGLAVIHFFLKRRKMSKFLRV 266 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 2333455666666666544444444444444
No 123
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=63.32 E-value=14 Score=27.12 Aligned_cols=25 Identities=12% Similarity=0.158 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHhhhhccccchhhh
Q 007861 539 RFAMWTCLITLFYVLYGVHSTYEAE 563 (587)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (587)
......++|++.|-+|.|++..+.+
T Consensus 8 i~ICVaii~lIlY~iYnr~~~~q~~ 32 (68)
T PF05961_consen 8 IIICVAIIGLILYGIYNRKKTTQNT 32 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCC
Confidence 3455567788889888888755444
No 124
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=58.55 E-value=2.8e+02 Score=30.31 Aligned_cols=113 Identities=17% Similarity=0.213 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhhcccccccCccC--CCCCCC--cchhHHHHHHHHHHHh
Q 007861 202 FPAVALVLLLTLCLCHGTKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVK--PGGLAP--FGVKGIVDGAATVYFS 277 (587)
Q Consensus 202 ~~~~~~~~~~~~~~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~ 277 (587)
+..+++.+++.+....|.|.++|+..+.+..-.+.+.++.+-+....+..+... ..+... ...+.+..+...++++
T Consensus 256 lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffs 335 (629)
T KOG3659|consen 256 LCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFS 335 (629)
T ss_pred HHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhh
Confidence 444555556667888899999998555444443222333333321111111000 000000 0123345555556665
Q ss_pred c-cchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHH
Q 007861 278 Y-IGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSL 315 (587)
Q Consensus 278 ~-~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~ 315 (587)
. .|+......+.-.|.-.+=..-|++.+ ++..+.+++
T Consensus 336 lg~GfG~L~AfaSyn~F~NNc~rDAll~S-~in~~ts~~ 373 (629)
T KOG3659|consen 336 LGPGFGVLIAFASYNKFHNNCYRDALLTS-IINCLTSFL 373 (629)
T ss_pred cCccchhhhhhhhhcccccchhhhhHHHH-HHHHHHHHH
Confidence 5 577777777666554322233344433 333344433
No 125
>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter. Proteins in this group are endosomal integral membrane proteins.; GO: 0016021 integral to membrane
Probab=57.48 E-value=2.8e+02 Score=30.08 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=17.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccccccC
Q 007861 219 TKESSILNLIMTIFHVVFFGFIIIAGFCNGSVQN 252 (587)
Q Consensus 219 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~ 252 (587)
+++.+-++.++.+..+..++.+++.-..+.|...
T Consensus 198 ihw~SiiNS~iivl~L~~~v~~Il~R~l~~D~~~ 231 (521)
T PF02990_consen 198 IHWFSIINSFIIVLFLSGLVAIILLRTLRRDISR 231 (521)
T ss_pred eEEEeHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 4555666666555554444444444344444433
No 126
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=56.89 E-value=1.7e+02 Score=27.27 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHH
Q 007861 400 ATLFLGLCTASIA 412 (587)
Q Consensus 400 a~~~~~~~~~~~~ 412 (587)
++++.++++.+..
T Consensus 86 ~L~~~~if~~~~g 98 (206)
T PF06570_consen 86 SLLFFGIFSLLFG 98 (206)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 127
>COG3965 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=54.29 E-value=2.1e+02 Score=27.59 Aligned_cols=25 Identities=20% Similarity=0.166 Sum_probs=18.2
Q ss_pred HhhHHHHHHhhhcCCCchHHhhhcC
Q 007861 368 LGQARYLCVIGRARLVPTWLAKVHP 392 (587)
Q Consensus 368 ~~~sR~l~a~a~dg~lP~~~~~~~~ 392 (587)
...||.+..--||+-+|--+.++.|
T Consensus 66 L~vsrli~~~p~~~RF~~GfwhlEp 90 (314)
T COG3965 66 LLVSRLIAKDPRDARFPYGFWHLEP 90 (314)
T ss_pred HHHHHHhccCCCccccCcchhhhhh
Confidence 4568888777788888866666663
No 128
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=50.20 E-value=16 Score=30.73 Aligned_cols=20 Identities=5% Similarity=0.152 Sum_probs=5.9
Q ss_pred HHHHHHhhhhccccchhhhhh
Q 007861 545 CLITLFYVLYGVHSTYEAEEM 565 (587)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~ 565 (587)
++.++.|+ .+|++|+...+.
T Consensus 80 ~Illi~y~-irR~~Kk~~~~~ 99 (122)
T PF01102_consen 80 IILLISYC-IRRLRKKSSSDV 99 (122)
T ss_dssp HHHHHHHH-HHHHS-------
T ss_pred HHHHHHHH-HHHHhccCCCCC
Confidence 33444454 444444544443
No 129
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=48.01 E-value=3.6e+02 Score=28.48 Aligned_cols=72 Identities=14% Similarity=0.202 Sum_probs=54.6
Q ss_pred hhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHH
Q 007861 137 SYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLC 216 (587)
Q Consensus 137 ~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (587)
..+.+.+|+..+.+.+...+++...+......+++++++..++ . .+ ....+++.++...+..
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~-i---sY--------------~~~v~i~~l~S~~lSn 330 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP-L---SY--------------RTLVFILGGFSMVVSN 330 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-C---cH--------------HHHHHHHHHHHHHHHH
Confidence 4667889999999999999999999999999999999988765 1 11 1455566666777777
Q ss_pred hhhhhhHHHH
Q 007861 217 HGTKESSILN 226 (587)
Q Consensus 217 ~g~k~~~~~~ 226 (587)
.|.+..-++.
T Consensus 331 ~G~~~II~~s 340 (439)
T PRK15433 331 LGLSQLIQIS 340 (439)
T ss_pred hHHHHHHHHH
Confidence 7766655543
No 130
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=45.90 E-value=3.5e+02 Score=27.72 Aligned_cols=24 Identities=13% Similarity=0.308 Sum_probs=17.6
Q ss_pred cccccHHHHHHHHHHHHHHhcCCh
Q 007861 511 VPFMPWPAAISIFLNVFLMTTLKL 534 (587)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~ 534 (587)
..+.+..|++++++...++-....
T Consensus 286 s~~~~L~PV~a~llg~l~LgE~lt 309 (358)
T PLN00411 286 AIFKPLSILIAVVMGAIFLNDSLY 309 (358)
T ss_pred HHHHhHHHHHHHHHHHHHhCCCCc
Confidence 356778899999988887776533
No 131
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=44.64 E-value=3.7e+02 Score=27.59 Aligned_cols=60 Identities=12% Similarity=-0.184 Sum_probs=34.8
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCchh
Q 007861 393 STGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPPSHT 455 (587)
Q Consensus 393 ~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 455 (587)
|...-.-+.+...+++...-- .....+.........+...++.+-..+.|+|+++ +++|.
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p~-~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~--~~~~~ 367 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYPE-GFLYAIGYAGLAATIWAVIIPALLAWKARKKFPN--AGYRV 367 (381)
T ss_pred CchhhhhhHHhHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCccc
Confidence 445544444545555543322 2233445555667778888888888888876544 35554
No 132
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=41.71 E-value=72 Score=31.38 Aligned_cols=81 Identities=10% Similarity=0.035 Sum_probs=36.8
Q ss_pred CCCcchHHHHHHHHHHHHHHhhhcHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHH
Q 007861 393 STGTPLNATLFLGLCTASIALFTELNIVLEMI-SISTLLVFYLVANALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSL 471 (587)
Q Consensus 393 ~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (587)
|++.-+.|.++..+....++-++-|....... ++-..+.+.++.+-.+.--.|+-.+..|+-...++.....++.++.+
T Consensus 27 kwk~~Vpa~v~iy~gamff~t~Glfs~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl 106 (384)
T COG5505 27 KWKSAVPAAVIIYAGAMFFTTVGLFSVESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFIL 106 (384)
T ss_pred CccchhhHHHHHHHHHHHHhhcccccccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHH
Confidence 45555566776677777666665553222222 23333444444444443222332233333333444444444444443
Q ss_pred hh
Q 007861 472 SL 473 (587)
Q Consensus 472 ~~ 473 (587)
.+
T Consensus 107 ~y 108 (384)
T COG5505 107 AY 108 (384)
T ss_pred HH
Confidence 33
No 133
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=39.16 E-value=3.1e+02 Score=25.14 Aligned_cols=20 Identities=10% Similarity=0.109 Sum_probs=13.3
Q ss_pred CCchHHhhhcCCCCcchHHH
Q 007861 382 LVPTWLAKVHPSTGTPLNAT 401 (587)
Q Consensus 382 ~lP~~~~~~~~~~~~P~~a~ 401 (587)
-+|.++.|+|.-.+.-..++
T Consensus 29 RfPD~YtRLHAATKa~TLGv 48 (197)
T PRK12585 29 RLPDVYTRTHAAGISNTFGV 48 (197)
T ss_pred hcCcHHHHhhccccchhhhH
Confidence 37999999996544444343
No 134
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=39.14 E-value=5.2e+02 Score=27.76 Aligned_cols=47 Identities=11% Similarity=0.037 Sum_probs=28.2
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHhh
Q 007861 504 SHPTGWSVPFMPWPAAISIFLNVFLMTT---LKLLSYQRFAMWTCLITLFYV 552 (587)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 552 (587)
..+++||.|. +.+.++++.+++++.. ...........+.++|...|+
T Consensus 418 ~~~rp~r~p~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~y~ 467 (501)
T TIGR00911 418 EMNRPIKVPL--FFPVFFLLSCLFLIILSLYSPPVGCGVGFIIMLTGVPVYF 467 (501)
T ss_pred CCCCCccCch--HHHHHHHHHHHHHhhhhhccCchhhHHHHHHHHHHHHHHH
Confidence 3456788876 5677777777666542 223333344556677776665
No 135
>PHA03049 IMV membrane protein; Provisional
Probab=39.07 E-value=47 Score=24.29 Aligned_cols=24 Identities=13% Similarity=0.141 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHhhhhccccchhh
Q 007861 539 RFAMWTCLITLFYVLYGVHSTYEA 562 (587)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~~~~~ 562 (587)
......++|++.|-+|.|++..+.
T Consensus 8 ~iICVaIi~lIvYgiYnkk~~~q~ 31 (68)
T PHA03049 8 VIICVVIIGLIVYGIYNKKTTTSQ 31 (68)
T ss_pred HHHHHHHHHHHHHHHHhcccccCC
Confidence 345556778888888887774443
No 136
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=37.87 E-value=5.4e+02 Score=27.64 Aligned_cols=69 Identities=7% Similarity=0.035 Sum_probs=35.6
Q ss_pred hchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHhh--cccCCccccc--chHHHHHHHhChhHHHHHHHHH
Q 007861 285 STLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLCL--MVPYNKILKD--ASFSMAFRNIGWAWASNVVGAG 354 (587)
Q Consensus 285 ~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~ 354 (587)
...++..|+. ||+++++.-++--.....++.-.+.++ ..++.++..- -.-.+..+..+.+....++.+.
T Consensus 315 G~~sG~iks~-~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~~~~~~l~i~fi 387 (502)
T PF03806_consen 315 GIASGTIKSD-KDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLGLPGIPLIIGFI 387 (502)
T ss_pred hhhhceecCH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 4567888886 799999888775544433333333222 3455554421 1123344555544444444333
No 137
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=37.80 E-value=5.1e+02 Score=27.29 Aligned_cols=73 Identities=8% Similarity=0.157 Sum_probs=54.9
Q ss_pred hhHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHH
Q 007861 137 SYLRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLC 216 (587)
Q Consensus 137 ~~~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (587)
..+++.+|+....+.+....++...........+++|++..++.. .+ ....+++.++-..+..
T Consensus 265 ~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki---sY--------------~~~v~i~~i~S~~ian 327 (427)
T PF05525_consen 265 QIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI---SY--------------KVWVIIFTIFSFIIAN 327 (427)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---Ch--------------HHHHHHHHHHHHHHHH
Confidence 456778999999999999999999888888999999999988711 11 1455566666777788
Q ss_pred hhhhhhHHHH
Q 007861 217 HGTKESSILN 226 (587)
Q Consensus 217 ~g~k~~~~~~ 226 (587)
.|....-++.
T Consensus 328 ~Gl~~Ii~~s 337 (427)
T PF05525_consen 328 LGLDQIIKIS 337 (427)
T ss_pred hCHHHHHHHH
Confidence 8876655554
No 138
>PLN02351 cytochromes b561 family protein
Probab=36.80 E-value=3.9e+02 Score=25.61 Aligned_cols=24 Identities=8% Similarity=0.343 Sum_probs=17.7
Q ss_pred CccccccccHHHHHHHHHHHHHHh
Q 007861 507 TGWSVPFMPWPAAISIFLNVFLMT 530 (587)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
...|....||....|+...+..+.
T Consensus 149 ~~~Ra~~~P~Hv~~Gl~if~Laia 172 (242)
T PLN02351 149 RTTRTTVLPWHVFLGLYTYGLAVA 172 (242)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHH
Confidence 346778889999888887776544
No 139
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=33.21 E-value=3.8e+02 Score=24.42 Aligned_cols=21 Identities=24% Similarity=0.343 Sum_probs=11.8
Q ss_pred CCCcchH-----HHHHHHHHHHHHHh
Q 007861 393 STGTPLN-----ATLFLGLCTASIAL 413 (587)
Q Consensus 393 ~~~~P~~-----a~~~~~~~~~~~~~ 413 (587)
|+.-|+. ++++.++++++-.+
T Consensus 89 kNtdp~lm~lDssLl~lg~~aLlsgi 114 (226)
T COG4858 89 KNTDPWLMWLDSSLLFLGAMALLSGI 114 (226)
T ss_pred cCCCceEEEecccHHHHHHHHHHHHH
Confidence 5555665 56666665554443
No 140
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=32.86 E-value=6.2e+02 Score=26.81 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=22.7
Q ss_pred hHHhhhcCCCCcchHHHHHHHHHHHHHHhh
Q 007861 385 TWLAKVHPSTGTPLNATLFLGLCTASIALF 414 (587)
Q Consensus 385 ~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 414 (587)
|.+.|+-+.-++|..|+.+..+++.+.+++
T Consensus 82 r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 82 RLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred HHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 556666656789999999888888777664
No 141
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=31.62 E-value=6.1e+02 Score=26.35 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhccCCCCCCccccccccHH
Q 007861 484 LFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWP 517 (587)
Q Consensus 484 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 517 (587)
..+.+..+.......+.|+.++..+|+.+.....
T Consensus 346 ~~~il~~ilP~~m~~~~r~~~~~~~~~~~gg~~~ 379 (394)
T PF03222_consen 346 GIAILLGILPALMVWKARKRKPKQPYRVPGGNFT 379 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcccCCCCeEEeCcHHH
Confidence 3444444455444455455555566888776654
No 142
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=31.47 E-value=16 Score=35.14 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=0.0
Q ss_pred chhhHHHHHHHHHHHHHHhhccC
Q 007861 480 WGLPLFGGLMLIVTAFFHYSMSR 502 (587)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~p~ 502 (587)
.+++-++++.++.+.++..++++
T Consensus 53 ~vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 53 TVLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 55666666666666666655343
No 143
>PF10856 DUF2678: Protein of unknown function (DUF2678); InterPro: IPR022564 This family of proteins has no known function.
Probab=30.31 E-value=1e+02 Score=25.60 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=23.2
Q ss_pred HHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHH
Q 007861 438 ALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSL 471 (587)
Q Consensus 438 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (587)
..++..+|++|.++++|.+++.....++..+...
T Consensus 76 ~lLI~WYR~gdl~Pkfr~li~~~~~~ivllci~a 109 (118)
T PF10856_consen 76 ILLIFWYRQGDLDPKFRYLIYYNCFSIVLLCICA 109 (118)
T ss_pred HhheeehhcCCCChhHHHHHHHHHHHHHHHHHhh
Confidence 4556778888899999988776555555444443
No 144
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=29.36 E-value=2.1e+02 Score=21.81 Aligned_cols=38 Identities=18% Similarity=0.060 Sum_probs=30.1
Q ss_pred hhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHHHHh
Q 007861 284 VSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMALSLC 321 (587)
Q Consensus 284 ~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~~~~ 321 (587)
-..+-.|++.|=|.+.+-+..+...+..+..+..+.=.
T Consensus 6 ~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl 43 (75)
T PF11998_consen 6 YARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRL 43 (75)
T ss_pred HHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567899999999999999999888887776665433
No 145
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=28.85 E-value=3.3e+02 Score=22.44 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHhhhccCC
Q 007861 432 FYLVANALIYRRYVMISN 449 (587)
Q Consensus 432 ~~~~~~~~~~~r~~~~~~ 449 (587)
..+..++...+|-+.-.+
T Consensus 58 ~~i~~lal~vRRlhD~G~ 75 (120)
T PF05656_consen 58 LFIPSLALTVRRLHDIGR 75 (120)
T ss_pred HHHHHHHHHhhhhhcCCC
Confidence 333445555555554333
No 146
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=28.60 E-value=5e+02 Score=24.40 Aligned_cols=30 Identities=13% Similarity=0.395 Sum_probs=20.0
Q ss_pred hccCCCCCCccccccccHHHHHHHHHHHHHHh
Q 007861 499 SMSRVSHPTGWSVPFMPWPAAISIFLNVFLMT 530 (587)
Q Consensus 499 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
..|.. ....|....|+....|++..+..+.
T Consensus 120 l~P~~--~~~~r~~~~p~H~~~Gl~~fvLaia 149 (214)
T cd08764 120 LFPGL--PETLRAAYLPLHVFFGLFIFVLAVA 149 (214)
T ss_pred Hhccc--chHHHHHHhHHHHHHHHHHHHHHHH
Confidence 33652 3346677888888888877776544
No 147
>PF11174 DUF2970: Protein of unknown function (DUF2970); InterPro: IPR021344 This short family is conserved in Proteobacteria. The function is not known.
Probab=28.58 E-value=1.7e+02 Score=20.86 Aligned_cols=47 Identities=15% Similarity=0.285 Sum_probs=30.6
Q ss_pred HHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHHH
Q 007861 269 DGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMAL 318 (587)
Q Consensus 269 ~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~~ 318 (587)
..+-...|+|.|...-.+.-+|.++.+ |...+..-++.+++++...+
T Consensus 3 ~~~~sVl~af~GVqs~~~~e~Df~~~~---p~~~Ii~gii~~~~fV~~Lv 49 (56)
T PF11174_consen 3 QVVKSVLWAFFGVQSSKNRERDFAQGS---PVHFIIVGIILAALFVAGLV 49 (56)
T ss_pred HHHHHHHHHHhCcCcchhHHHHHHcCC---CchHHHHHHHHHHHHHHHHH
Confidence 345567899999998888888776642 55555555555555554443
No 148
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=26.60 E-value=77 Score=29.26 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=25.2
Q ss_pred hHhhcCcC-CCcchHHHHHHHHHHHHHHHHHHH
Q 007861 288 AEEIQNPS-KSLPLGIVGSVLIVSLLYSLMALS 319 (587)
Q Consensus 288 ~~E~k~p~-r~ip~ai~~~~~~~~v~y~~~~~~ 319 (587)
-|-..||| |++||+++.+.+.+.++-+...+.
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 46667898 899999999998888777665543
No 149
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=26.38 E-value=4.2e+02 Score=24.10 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=14.9
Q ss_pred CCccccccccHHHHHHHHHHHH
Q 007861 506 PTGWSVPFMPWPAAISIFLNVF 527 (587)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~ 527 (587)
++..|....||....|+...+.
T Consensus 136 ~~~~ra~~~p~H~~~G~~if~L 157 (179)
T cd08762 136 PMWLRALVKPIHVFFGAMILVL 157 (179)
T ss_pred chhHHHHHhHHHHHHHHHHHHH
Confidence 3346677888988777666543
No 150
>PF03073 TspO_MBR: TspO/MBR family; InterPro: IPR004307 Members of this group are involved in transmembrane signalling. In both prokaryotes and mitochondria they are localized to the outer membrane, and have been shown to bind and transport dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway [, ]. They are associated with the major outer membrane porins (in prokaryotes) and with the voltage-dependent anion channel (in mitochondria) []. Rhodobacter sphaeroides TspO (previously CrtK) is involved in signal transduction, functioning as a negative regulator of the expression of some photosynthesis genes (PpsR/AppA repressor/antirepressor regulon). This down-regulation is believed to be in response to oxygen levels. TspO works through (or modulates) the PpsR/AppA system and acts upstream of the site of action of these regulatory proteins []. It has been suggested that the TspO regulatory pathway works by regulating the efflux of certain tetrapyrrole intermediates of the haem/bacteriochlorophyll biosynthetic pathways in response to the availability of molecular oxygen, thereby causing the accumulation of a biosynthetic intermediate that serves as a corepressor for the regulated genes []. A homologue of the TspO protein in Rhizobium meliloti (Sinorhizobium meliloti) is involved in regulating expression of the ndi locus in response to stress conditions []. There is evidence that the S. meliloti TspO acts through, or in addition to, the FixL regulatory system. In animals, the peripheral-type benzodiazepine receptor (PBR, MBR) is a mitochondrial protein (located in the outer mitochondrial membrane) characterised by its ability to bind with nanomolar affinity to a variety of benzodiazepine-like drugs, as well as to dicarboxylic tetrapyrrole intermediates of the haem biosynthetic pathway. Depending upon the tissue, it was shown to be involved in steroidogenesis, haem biosynthesis, apoptosis, cell growth and differentiation, mitochondrial respiratory control, and immune and stress response, but the precise function of the PBR remains unclear. The role of PBR in the regulation of cholesterol transport from the outer to the inner mitochondrial membrane, the rate-determining step in steroid biosynthesis, has been studied in detail. PBR is required for the binding, uptake and release, upon ligand activation, of the substrate cholesterol []. PBR forms a multimeric complex with the voltage-dependent anion channel (VDAC) [] and adenine nucleotide carrier []. Molecular modeling of PBR suggested that it might function as a channel for cholesterol. Indeed, cholesterol uptake and transport by bacterial cells was induced upon PBR expression. Mutagenesis studies identified a cholesterol recognition/interaction motif (CRAC) in the cytoplasmic C terminus of PBR [, ]. In complementation experiments, rat PBR (pk18) functionally substitutes for its homologue TspO in R. sphaeroides, negatively affecting transcription of specific photosynthesis genes []. This suggests that PBR may function as an oxygen sensor, transducing an oxygen-triggered signal leading to an adaptive cellular response. These observations suggest that fundamental aspects of this receptor and the downstream signal transduction pathway are conserved in bacteria and higher eukaryotic mitochondria. The alpha-3 subdivision of the purple bacteria is considered to be a likely source of the endosymbiont that ultimately gave rise to the mitochondrion. Therefore, it is possible that the mammalian PBR remains both evolutionarily and functionally related to the TspO of R. sphaeroides.; GO: 0016021 integral to membrane
Probab=26.17 E-value=4.1e+02 Score=23.10 Aligned_cols=14 Identities=21% Similarity=0.574 Sum_probs=8.5
Q ss_pred chHHhhhcCCCCcc
Q 007861 384 PTWLAKVHPSTGTP 397 (587)
Q Consensus 384 P~~~~~~~~~~~~P 397 (587)
.++.++.++..=+|
T Consensus 23 ~~wy~~L~kP~~~P 36 (148)
T PF03073_consen 23 SEWYDSLKKPSWTP 36 (148)
T ss_pred hHHHhhccCCCCCC
Confidence 56777777544444
No 151
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=25.80 E-value=1.4e+02 Score=20.47 Aligned_cols=14 Identities=7% Similarity=0.166 Sum_probs=6.9
Q ss_pred HHHHHHHhhhhcccc
Q 007861 544 TCLITLFYVLYGVHS 558 (587)
Q Consensus 544 ~~~~~~~~~~~~~~~ 558 (587)
..+|+++| .|++++
T Consensus 21 ~F~gi~~w-~~~~~~ 34 (49)
T PF05545_consen 21 FFIGIVIW-AYRPRN 34 (49)
T ss_pred HHHHHHHH-HHcccc
Confidence 34565655 444444
No 152
>PF15102 TMEM154: TMEM154 protein family
Probab=25.59 E-value=55 Score=28.39 Aligned_cols=9 Identities=22% Similarity=0.268 Sum_probs=4.2
Q ss_pred hhccccchh
Q 007861 553 LYGVHSTYE 561 (587)
Q Consensus 553 ~~~~~~~~~ 561 (587)
.++||+.|+
T Consensus 81 ~~kRkr~K~ 89 (146)
T PF15102_consen 81 YYKRKRTKQ 89 (146)
T ss_pred EEeecccCC
Confidence 345555444
No 153
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=25.28 E-value=6.9e+02 Score=24.88 Aligned_cols=40 Identities=13% Similarity=0.178 Sum_probs=19.6
Q ss_pred cchHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHH
Q 007861 396 TPLNATLFLGLCTASIALF--TELNIVLEMISISTLLVFYLV 435 (587)
Q Consensus 396 ~P~~a~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~ 435 (587)
.|..|+.+..+++.+-..+ ...|.+.........+.|..+
T Consensus 97 ~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~v 138 (304)
T COG0109 97 SPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVV 138 (304)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3677777666554433222 233445544444444444433
No 154
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.17 E-value=44 Score=28.55 Aligned_cols=9 Identities=0% Similarity=-0.164 Sum_probs=3.5
Q ss_pred hccccchhh
Q 007861 554 YGVHSTYEA 562 (587)
Q Consensus 554 ~~~~~~~~~ 562 (587)
..||++++|
T Consensus 22 ~~rRR~r~G 30 (130)
T PF12273_consen 22 HNRRRRRRG 30 (130)
T ss_pred HHHHHhhcC
Confidence 333333434
No 155
>PF14256 YwiC: YwiC-like protein
Probab=25.12 E-value=4.3e+02 Score=22.51 Aligned_cols=46 Identities=7% Similarity=-0.050 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007861 402 LFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMI 447 (587)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 447 (587)
+...++..++..........-....+.++.|....-.....|.|++
T Consensus 8 W~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~~ 53 (129)
T PF14256_consen 8 WAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRRR 53 (129)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3344444444444444444444455666677776666666665553
No 156
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=25.09 E-value=4.6e+02 Score=24.32 Aligned_cols=17 Identities=6% Similarity=0.194 Sum_probs=8.7
Q ss_pred cccccccHHHHHHHHHH
Q 007861 509 WSVPFMPWPAAISIFLN 525 (587)
Q Consensus 509 ~~~~~~~~~~~~~~~~~ 525 (587)
.+.++..+++..+++..
T Consensus 67 l~~~~l~iHv~~~~~~y 83 (214)
T PF01578_consen 67 LQSPWLYIHVPLALLGY 83 (214)
T ss_pred hhcccchhhHHHHHHHH
Confidence 44456556555554443
No 157
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.4e+02 Score=21.60 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=7.2
Q ss_pred HHHHHhhhhccccchhh
Q 007861 546 LITLFYVLYGVHSTYEA 562 (587)
Q Consensus 546 ~~~~~~~~~~~~~~~~~ 562 (587)
++.+ |+.|++++|.+.
T Consensus 23 iavi-~~ayr~~~K~~~ 38 (60)
T COG4736 23 IAVI-YFAYRPGKKGEF 38 (60)
T ss_pred HHHH-HHHhcccchhhH
Confidence 3444 445555554433
No 158
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=23.32 E-value=1.2e+02 Score=21.17 Aligned_cols=7 Identities=14% Similarity=-0.230 Sum_probs=3.0
Q ss_pred HHHHHHh
Q 007861 545 CLITLFY 551 (587)
Q Consensus 545 ~~~~~~~ 551 (587)
++|+..+
T Consensus 15 lLg~~I~ 21 (50)
T PF12606_consen 15 LLGLSIC 21 (50)
T ss_pred HHHHHHH
Confidence 3444444
No 159
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=22.80 E-value=1e+03 Score=25.96 Aligned_cols=96 Identities=15% Similarity=0.068 Sum_probs=57.5
Q ss_pred hHHHHHhhcccccccchhccHhhhhhhcC-chHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhchhHHHHH
Q 007861 73 YDLVALGVGGMLGVGVFVTTGPVALQISG-PSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGEFVGYFA 151 (587)
Q Consensus 73 ~~~~~~~~~~~ig~gi~~~~~~~~~~~~G-~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~~~g~~~ 151 (587)
+-++..=+.++.|.|-.+.|-..+ .-| +...+..++++++.-.+-=.+.-+.|.--+.-+.-+-+++.+|+..|.+.
T Consensus 55 ~vlfGhHFaaIAGAGPivGPvlAA--q~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~~ 132 (575)
T COG1966 55 WVLFGHHFASIAGAGPIVGPALAA--QYGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVFF 132 (575)
T ss_pred hhhhHHHHHHHhccCcchhHHHHH--HhcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHHH
Confidence 334455566777888888776655 345 55555566676666654433333433333333567788888999888887
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 007861 152 GANILMEYVLSNAAVARSF 170 (587)
Q Consensus 152 g~~~~l~~~~~~~~~~~~~ 170 (587)
....++-.+...+.-+...
T Consensus 133 ~~~~l~iliiv~Avfa~vv 151 (575)
T COG1966 133 LLLALILLILVGAVFAAVI 151 (575)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7655554444444444333
No 160
>PHA02898 virion envelope protein; Provisional
Probab=22.08 E-value=3.9e+02 Score=20.95 Aligned_cols=21 Identities=19% Similarity=0.241 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhhhhccccch
Q 007861 540 FAMWTCLITLFYVLYGVHSTY 560 (587)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~~~ 560 (587)
.+..+.+|++.|-.|+|+=+.
T Consensus 54 lgivl~lG~~ifs~y~r~C~~ 74 (92)
T PHA02898 54 LAIILILGIIFFKGYNMFCGG 74 (92)
T ss_pred HHHHHHHHHHHHHHHhhhcCC
Confidence 566778899988888866543
No 161
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.05 E-value=5.3e+02 Score=22.47 Aligned_cols=71 Identities=13% Similarity=0.253 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhc-----------cccchhhHHHHHHHH-HHHHHHhhccCCCCCCccccccccHHHHHHH
Q 007861 455 TLLFLFLLSFCAICFSLSLKIQ-----------QQLWGLPLFGGLMLI-VTAFFHYSMSRVSHPTGWSVPFMPWPAAISI 522 (587)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 522 (587)
+..-...+.+.++++...+... ..|.++..+.+..+- +.++..++.|. ....+|....|+....|.
T Consensus 45 ~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~--~~~~~r~~~~p~H~~~G~ 122 (144)
T cd08766 45 LTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVTFWFPG--ASRNTRAALLPWHVFLGL 122 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHH
Confidence 3444555666666666665543 223333333333222 22222244475 234466778888877776
Q ss_pred HHHHH
Q 007861 523 FLNVF 527 (587)
Q Consensus 523 ~~~~~ 527 (587)
+..+.
T Consensus 123 ~~~~l 127 (144)
T cd08766 123 AIYYL 127 (144)
T ss_pred HHHHH
Confidence 66544
No 162
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=21.27 E-value=1.9e+02 Score=27.44 Aligned_cols=31 Identities=13% Similarity=0.520 Sum_probs=23.4
Q ss_pred hhccCCCCCCccccccccHHHHHHHHHHHHHHh
Q 007861 498 YSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMT 530 (587)
Q Consensus 498 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (587)
++.|. .++++|...+||....|+...+..+.
T Consensus 148 fl~pg--~~~~~Rs~lmP~H~~~Gl~~f~lai~ 178 (245)
T KOG1619|consen 148 FLFPG--SPESYRSRLMPWHVFLGLAIFILAIV 178 (245)
T ss_pred HhcCC--CCccHHhhhhhHHHHHHHHHHHHHHH
Confidence 44365 45678889999999999888777554
No 163
>COG4325 Predicted membrane protein [Function unknown]
Probab=20.42 E-value=9.1e+02 Score=24.92 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=29.0
Q ss_pred HHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh
Q 007861 373 YLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF 414 (587)
Q Consensus 373 ~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 414 (587)
..+.+|-.+.-|+.+.-.- | ++|..+++.+++.+++.++.
T Consensus 103 valqlaSsqfsPRll~~fm-r-d~~nqvvLa~FlctFvysl~ 142 (464)
T COG4325 103 VALQLASSQFSPRLLRTFL-R-DVPNQVVLAIFLCTFVYSLG 142 (464)
T ss_pred HHHHHHhccCCHHHHHHHh-h-cCchHHHHHHHHHHHHHHHH
Confidence 3456677788887777665 3 67888888888877777765
No 164
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=20.39 E-value=1.1e+03 Score=25.66 Aligned_cols=53 Identities=9% Similarity=0.100 Sum_probs=28.7
Q ss_pred hhccCC--CCCchhHH-HHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhh
Q 007861 444 YVMISN--NPPSHTLL-FLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYS 499 (587)
Q Consensus 444 ~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (587)
+++++. +|+||.+. ++...+.+.+...+...++...| +.-.+|+....++++.
T Consensus 494 ~~~~~~~~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~---~~~~~w~~~g~~~y~~ 549 (557)
T TIGR00906 494 WRQPQNKQKVAFKVPLVPFLPALSILINIFLMVQLDADTW---VRFAIWMAIGFLIYFL 549 (557)
T ss_pred hcCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHH---HHHHHHHHHHHHHHhh
Confidence 344555 77887743 34455566666666666653322 2344555555555544
No 165
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=20.30 E-value=1.2e+02 Score=27.09 Aligned_cols=15 Identities=20% Similarity=0.465 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHhhh
Q 007861 539 RFAMWTCLITLFYVL 553 (587)
Q Consensus 539 ~~~~~~~~~~~~~~~ 553 (587)
++.+...+.++|+.+
T Consensus 100 Vl~g~s~l~i~yfvi 114 (163)
T PF06679_consen 100 VLVGLSALAILYFVI 114 (163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444454443
Done!