Query 007861
Match_columns 587
No_of_seqs 233 out of 2973
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 12:19:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007861.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007861hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 4.1E-51 1.4E-55 433.3 38.8 418 64-559 4-432 (445)
2 3gia_A Uncharacterized protein 100.0 6.1E-49 2.1E-53 416.5 38.7 364 66-447 4-370 (444)
3 4djk_A Probable glutamate/gamm 100.0 8E-49 2.7E-53 423.2 38.0 410 62-508 5-440 (511)
4 2jln_A MHP1; hydantoin, transp 99.3 1.2E-09 4E-14 115.9 30.7 285 66-377 23-329 (501)
5 2xq2_A Sodium/glucose cotransp 98.7 0.00016 5.3E-09 78.2 37.6 285 67-373 48-376 (593)
6 3dh4_A Sodium/glucose cotransp 98.5 0.00021 7.2E-09 76.1 32.1 288 67-381 19-352 (530)
7 2a65_A Leutaa, Na(+):neurotran 97.5 0.042 1.4E-06 57.5 26.8 109 205-315 173-292 (519)
8 2wsw_A BCCT family betaine/car 94.7 4.6 0.00016 41.7 26.6 24 67-90 88-111 (509)
9 4ain_A Glycine betaine transpo 94.5 3.6 0.00012 42.8 20.3 23 67-89 93-115 (539)
10 4djk_A Probable glutamate/gamm 61.0 1.5E+02 0.0051 30.2 20.2 18 540-557 450-467 (511)
11 2l2t_A Receptor tyrosine-prote 30.1 64 0.0022 20.8 3.6 14 545-558 25-38 (44)
12 2ks1_B Epidermal growth factor 28.3 51 0.0017 21.3 2.9 14 545-558 26-39 (44)
13 2knc_A Integrin alpha-IIB; tra 24.2 1.5E+02 0.0051 20.0 4.7 9 516-524 13-21 (54)
14 4dx5_A Acriflavine resistance 20.7 9.4E+02 0.032 27.1 13.9 50 365-414 408-458 (1057)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=4.1e-51 Score=433.33 Aligned_cols=418 Identities=21% Similarity=0.279 Sum_probs=354.7
Q ss_pred cccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHh
Q 007861 64 ADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTF 143 (587)
Q Consensus 64 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~ 143 (587)
++.+|+++.+++.++.++.++|+|+|..++... . +|+..+++|+++++++++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~-~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANLA-S-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHHH-H-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHHH-H-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 346789999999999999999999999988754 3 78889999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhH
Q 007861 144 GEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESS 223 (587)
Q Consensus 144 g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~ 223 (587)
||.+|++.||.+++.+....+.+...++++++..++... +.| ...+++++++++...+|++|+|..+
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~in~~g~~~~~ 148 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-DPW------------VLTITCVVVLWIFVLLNIVGPKMIT 148 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-SHH------------HHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-ccH------------HHHHHHHHHHHHHHHHHHhchHHHH
Confidence 999999999999999999999998888888876554110 011 1236778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCc---chhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcch
Q 007861 224 ILNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPF---GVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPL 300 (587)
Q Consensus 224 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ 300 (587)
|++.+++.++++.++.+++.++.+.+.+++.+ ++.+. ++.+++.++..++|+|.|+|..++++||+|||+|++||
T Consensus 149 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~ 226 (445)
T 3l1l_A 149 RVQAVATVLALIPIVGIAVFGWFWFRGETYMA--AWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPI 226 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTCCCCCCCC--C-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhChhhccc--ccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccH
Confidence 99999999999998888888777665544431 22222 25578889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCcccc-cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh
Q 007861 301 GIVGSVLIVSLLYSLMALSLCLMVPYNKILK-DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGR 379 (587)
Q Consensus 301 ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~ 379 (587)
++..+..+++++|++..++.....|++++.. ++|+.++++..+++++..++.+..+++.+++.++.+++.+|+++++||
T Consensus 227 a~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~ 306 (445)
T 3l1l_A 227 ATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAAD 306 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888887653 578999998888889999999999999999999999999999999999
Q ss_pred cCCCchHHhhhcCCCCcchHHHHHHHHHHHHHHhh-------hcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 007861 380 ARLVPTWLAKVHPSTGTPLNATLFLGLCTASIALF-------TELNIVLEMISISTLLVFYLVANALIYRRYVMISNNPP 452 (587)
Q Consensus 380 dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 452 (587)
||.+|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.++..++.|.+.+++.++.|+|++ +
T Consensus 307 dg~lP~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~--- 381 (445)
T 3l1l_A 307 DGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-G--- 381 (445)
T ss_dssp TTSSCGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-G---
T ss_pred CCCCcHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-c---
Confidence 999999999999 6799999999999987776654 347899999999999999999999999887653 1
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhccccchhhHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC
Q 007861 453 SHTLLFLFLLSFCAICFSLSLKIQQQLWGLPLFGGLMLIVTAFFHYSMSRVSHPTGWSVPFMPWPAAISIFLNVFLMTTL 532 (587)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 (587)
| |.|..++.+.++.+.+++++...
T Consensus 382 ------------------------------------------------~--------r~~~~~~~~~~~~~~~~~~~~~~ 405 (445)
T 3l1l_A 382 ------------------------------------------------K--------ARPAYLAVTTIAFLYCIWAVVGS 405 (445)
T ss_dssp ------------------------------------------------G--------GCTTTHHHHHHHHHHHHHHHHHS
T ss_pred ------------------------------------------------c--------ccchhHHHHHHHHHHHHHHHHHc
Confidence 1 12456678888888888888888
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhccccc
Q 007861 533 KLLSYQRFAMWTCLITLFYVLYGVHST 559 (587)
Q Consensus 533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 559 (587)
....+.....++++|+.+|.+++||++
T Consensus 406 ~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 406 GAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 888888889999999998877766653
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=6.1e-49 Score=416.50 Aligned_cols=364 Identities=21% Similarity=0.362 Sum_probs=323.6
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
.+|+++.+++.+++++.++|+|++..++..... +|++.+++|+++++++++.+++++|+++++|++||.|+|+++.+|+
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 578999999999999999999999999987754 8889999999999999999999999999999999999999999999
Q ss_pred hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 146 FV-GYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 146 ~~-g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
.+ +...+|.+|+++....+.++..+++++...++. .++.|. ..+++++++++...+|++|+|..+|
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~------------~~~~~~~~~~~~~~in~~g~~~~~~ 149 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINA-PINTFN------------IAITEIGIVAFFTALNFFGSKAVGR 149 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-CCCHHH------------HHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CCchHH------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 63 445589999999999999999999999988862 221221 2266788888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccccccCccCCCCCCCcchhHHHHHHHHHHHhccchhhhhchhHhhcCcCCCcchHHHH
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCNGSVQNLVKPGGLAPFGVKGIVDGAATVYFSYIGYDSVSTLAEEIQNPSKSLPLGIVG 304 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~p~r~ip~ai~~ 304 (587)
++.++..++++.++.+++.++.+.+.+++.+ .+.+.++.+++.++...+|+|.|+|..++++||+|||+|++||++..
T Consensus 150 ~~~~~~~~~i~~~~~~ii~~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~ 227 (444)
T 3gia_A 150 AEFFIVLVKLLILGLFIFAGLITIHPSYVIP--DLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFI 227 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCGGGTSC--CCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcChhhcCC--CCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHH
Confidence 9999999999999888888877766666542 24466777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcccc--cchHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcCC
Q 007861 305 SVLIVSLLYSLMALSLCLMVPYNKILK--DASFSMAFRNIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRARL 382 (587)
Q Consensus 305 ~~~~~~v~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 382 (587)
+..+++++|++..++.....|++++.+ +.|+.++++...++++..++.+..+++.+++.++.+++.+|+++++||||.
T Consensus 228 ~~~~~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~ 307 (444)
T 3gia_A 228 SILIVMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGE 307 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999999999999988888877643 467888888777788889999999999999999999999999999999999
Q ss_pred CchHHhhhcCCCCcchHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 007861 383 VPTWLAKVHPSTGTPLNATLFLGLCTASIALFTELNIVLEMISISTLLVFYLVANALIYRRYVMI 447 (587)
Q Consensus 383 lP~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 447 (587)
+|++|+|+| | ++|.++++++.+++.++.++.+++.+.++.+.+.+++|.+.+++.+++|+|++
T Consensus 308 lP~~f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 370 (444)
T 3gia_A 308 LPEFFERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVG 370 (444)
T ss_dssp CCSSCCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHC
T ss_pred CCHHHhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 999999998 4 56999999999999998888899999999999999999999999998888764
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=8e-49 Score=423.17 Aligned_cols=410 Identities=17% Similarity=0.212 Sum_probs=308.7
Q ss_pred CCcccccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHH-HHHHHHHHHHhh--ccccCCchhhh
Q 007861 62 SGADMKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISA-LLSSLCYTEFSV--QIPVAGGAFSY 138 (587)
Q Consensus 62 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~ael~s--~~P~~GG~y~~ 138 (587)
++++++|+++.+++.+++++.++| ++..+. . ..+|+..++.++++.++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 456688999999999999999986 333333 2 347888777777777665 569999999999 999 9999999
Q ss_pred HHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhh
Q 007861 139 LRVTFGEFVGYFAGANILMEYVLSNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHG 218 (587)
Q Consensus 139 ~~~~~g~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 218 (587)
+++.+||.+||++||.+|++++...+++....+.++...+. . |+.+.+.....+++++++++++++|++|
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------p~~~~~~~~~~~~~~~~~~~~~~in~~g 148 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK-W---------PALNEDPITKTIAALIILWALALTQFGG 148 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT-C---------GGGTSCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---------cccccCcHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999888888888865531 0 1111112223467788888999999999
Q ss_pred hhhhHHHHHHHHHHHHHH-HHHHHhhhcccc---cccCc-cCCCCCCCcc-hhHHHHHHHHHHHhccchhhhhchhHhhc
Q 007861 219 TKESSILNLIMTIFHVVF-FGFIIIAGFCNG---SVQNL-VKPGGLAPFG-VKGIVDGAATVYFSYIGYDSVSTLAEEIQ 292 (587)
Q Consensus 219 ~k~~~~~~~~~~~~~i~~-~~~~~i~~~~~~---~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~G~e~~~~~~~E~k 292 (587)
+|..++++.+.+.++++. ++++++.++... +..+. .+..++.|.. ..+.+.++...+|+|.|+|.+++++||+|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k 228 (511)
T 4djk_A 149 TKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMS 228 (511)
T ss_dssp SSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhcc
Confidence 999999999988876443 444444444321 11111 1111222221 12234456678999999999999999999
Q ss_pred CcCCCcchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHH----HHHHhC--hhHHHHHHHHHHHHHHHHHHHHH
Q 007861 293 NPSKSLPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSM----AFRNIG--WAWASNVVGAGASLGIVASLLVA 366 (587)
Q Consensus 293 ~p~r~ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~ 366 (587)
||+|++||++..+..+++++|++..+++....|+++...+++..+ +++..| .++...++.+..+++.+++.++.
T Consensus 229 ~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (511)
T 4djk_A 229 NPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASW 308 (511)
T ss_dssp CCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888766544433 334455 57888999999999999999999
Q ss_pred HHhhHHHHHHhhhcCCCchHHhhhcCCCCcchHHHHHHHHHHHHH-Hhhhc--------HHHHHHHHHHHHHHHHHHHHH
Q 007861 367 MLGQARYLCVIGRARLVPTWLAKVHPSTGTPLNATLFLGLCTASI-ALFTE--------LNIVLEMISISTLLVFYLVAN 437 (587)
Q Consensus 367 ~~~~sR~l~a~a~dg~lP~~~~~~~~~~~~P~~a~~~~~~~~~~~-~~~~~--------~~~l~~~~~~~~~~~~~~~~~ 437 (587)
+.+.+|+++++||||.+|++|+|+| |+++|++|++++.++..+. ..+.+ ++.+.++.+++.+++|.++++
T Consensus 309 ~~~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~ 387 (511)
T 4djk_A 309 IVGPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFI 387 (511)
T ss_dssp TTHHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 6799999999985544332 33333 789999999999999999999
Q ss_pred HHHHHhhhccCCCCCchhHHHHHHHHHHHHHHHHhhhhcccc--chhhHHHHHHHHHHHHHHhhccCCCCCCc
Q 007861 438 ALIYRRYVMISNNPPSHTLLFLFLLSFCAICFSLSLKIQQQL--WGLPLFGGLMLIVTAFFHYSMSRVSHPTG 508 (587)
Q Consensus 438 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 508 (587)
+++++|+|+++.+||||.. .+++ +.+++++++++++..++.++ |...+++.
T Consensus 388 ~~~~~r~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~~ 440 (511)
T 4djk_A 388 GYIVLVLKHPDLKRTFNIP-------------------GGKGVKLVVAIVGLLTSIMAFIVSFL-PPDNIQGD 440 (511)
T ss_dssp HHHHHHHHCCSCCCSCCCS-------------------STTHHHHHHHHHHHHHHHHHHHHTTC-CCSCSTTC
T ss_pred HHHHHHHhCCCCCCCeecC-------------------CCchHHHHHHHHHHHHHHHHHHeeee-CCccccCC
Confidence 9999999988888998752 1233 55788888888888888877 54444433
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.33 E-value=1.2e-09 Score=115.91 Aligned_cols=285 Identities=11% Similarity=0.013 Sum_probs=156.0
Q ss_pred cccccChhHHHHHhhcccccccchhccHhhhhhhcCchHHHHHHHHHHHHHHHHHHHHHHhhccccCCc-hhhhHHHHhc
Q 007861 66 MKRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPSVFISYIIAGISALLSSLCYTEFSVQIPVAGG-AFSYLRVTFG 144 (587)
Q Consensus 66 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG-~y~~~~~~~g 144 (587)
.+|+.++++.+.+=++..+..+.+..-+... .|.+.+.+++...+..++.....+-.+..-|+.|- .....+..||
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~~Gl~~~v~~R~~FG 99 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFG 99 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHHHCCCHHHHTTTTSC
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCCChhhhhHhhcc
Confidence 3567899999888887776655554433333 25433333333333333333334444444444443 4557788899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----CCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhh
Q 007861 145 EFVGYFAGANILMEYVLSNAAVARSFTDYLCHAV----GENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTK 220 (587)
Q Consensus 145 ~~~g~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k 220 (587)
++.+.+......+..+...+......++.++..+ + ..+ ..+..+++.++...+...|.|
T Consensus 100 ~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g-~~~----------------~~v~~~i~~~l~~~~~~~G~~ 162 (501)
T 2jln_A 100 IRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTG-FTN----------------LPLWIVIFGAIQVVTTFYGIT 162 (501)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCC----------------HHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-cch----------------HHHHHHHHHHHHHHHHHhCHH
Confidence 9999998888888888777777777777776654 3 110 013334455566778899999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhcccccc--cCccCCCCCCCcchhHHHHHHHHH-HHhccchhhhhchhHhhcCcCCC
Q 007861 221 ESSILNLIMTIFHVVFFGFIIIAGFCNGSV--QNLVKPGGLAPFGVKGIVDGAATV-YFSYIGYDSVSTLAEEIQNPSKS 297 (587)
Q Consensus 221 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~e~~~~~~~E~k~p~r~ 297 (587)
...+++.+.....++.++.+.+..+.+.+. ++..+..+ +....+++.++... .+...+.-..+.++.+.|+++..
T Consensus 163 ~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~--~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~ 240 (501)
T 2jln_A 163 FIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGG--ENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNA 240 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCC--SSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCC--ccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccc
Confidence 999999999888877776666655544332 22211111 11122344444332 22223445567888888887431
Q ss_pred -----------cchHHHHHHHHHHHHHHHHHHHHhhcccCCcccccchHHHHHHHhChhHH-HHHHH-HHHHHHHHHHHH
Q 007861 298 -----------LPLGIVGSVLIVSLLYSLMALSLCLMVPYNKILKDASFSMAFRNIGWAWA-SNVVG-AGASLGIVASLL 364 (587)
Q Consensus 298 -----------ip~ai~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~~ 364 (587)
.-.+...+..+...+..+..+..... ....+|...+.+...++.. ..+.. +.++++.+++..
T Consensus 241 ~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~-----~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~ 315 (501)
T 2jln_A 241 SREGQTKADARYATAQWLGMVPASIIFGFIGAASMVL-----VGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNP 315 (501)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHH
T ss_pred cccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHh-----ccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 22333333333333222222222211 1122454444443333333 55556 666667666655
Q ss_pred -HHHHhhHHHHHHh
Q 007861 365 -VAMLGQARYLCVI 377 (587)
Q Consensus 365 -~~~~~~sR~l~a~ 377 (587)
...++.+--+..+
T Consensus 316 ~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 316 AANLLSPAYTLCST 329 (501)
T ss_dssp HHHTHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHh
Confidence 3666666655554
No 5
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.66 E-value=0.00016 Score=78.22 Aligned_cols=285 Identities=12% Similarity=0.079 Sum_probs=141.9
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
.|+++++....-.+++.+++..+......... .|.. ..+.|. ..+.....+..+...-.+. +.-..++|.++.||+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47888887766666666665555443333323 4543 333322 2222223333344443333 334589999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHHHHHHHHHhhhhhhHH
Q 007861 146 FVGYFAGANILMEYVL-SNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVLLLTLCLCHGTKESSI 224 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~k~~~~ 224 (587)
....+.+....+.+.+ ..+....+.+..++..++.. .+ ..+.+...+.......-|.|...+
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~---~~--------------~~i~i~~~i~~~Yt~~GGl~av~~ 187 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIP---LM--------------YSILGLALFALVYSIYGGLSAVVW 187 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCC---HH--------------HHHHHHHHHHHHHHHTTC---CCH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---HH--------------HHHHHHHHHHHHHHHhcchHHHHH
Confidence 8887777665544443 34555555666777777611 00 012222233344555668888777
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccc----------------ccCccCCCCCC-C-----cchhHHHHHHHHHHHhccchh
Q 007861 225 LNLIMTIFHVVFFGFIIIAGFCNGS----------------VQNLVKPGGLA-P-----FGVKGIVDGAATVYFSYIGYD 282 (587)
Q Consensus 225 ~~~~~~~~~i~~~~~~~i~~~~~~~----------------~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~G~e 282 (587)
...+=.+++++..+++.+..+.+.+ .+++....+.. + .++..++.+.......+.|.+
T Consensus 188 TD~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 267 (593)
T 2xq2_A 188 TDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN 267 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 7766666665554443333222110 11111000000 0 112211111112223344544
Q ss_pred -hhhchhHhhcCcCCCcchHHHHHHHHHHHHHHHHH----HHHhhccc--------------CCcc-cccchHHHHHHHh
Q 007861 283 -SVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSLMA----LSLCLMVP--------------YNKI-LKDASFSMAFRNI 342 (587)
Q Consensus 283 -~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~~~----~~~~~~~~--------------~~~~-~~~~~~~~~~~~~ 342 (587)
...+-.=+.||+ |+..|+.+.+.+....+.++.. .+.....+ ..+. +++..++... ..
T Consensus 268 q~~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~ 345 (593)
T 2xq2_A 268 QYIIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QF 345 (593)
T ss_dssp CSHHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HT
T ss_pred hHHHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HH
Confidence 345566678887 5788888877766444433211 11111000 1112 2344556566 55
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 007861 343 GWAWASNVVGAGASLGIVASLLVAMLGQARY 373 (587)
Q Consensus 343 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 373 (587)
.++++.-++..+.+.+..++..+.+.+.+-.
T Consensus 346 lp~~l~gl~~a~llaA~mST~~s~l~a~st~ 376 (593)
T 2xq2_A 346 LPVGVKGVVFAALAAAIVSSLASMLNSTATI 376 (593)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6688888888888888888888877777664
No 6
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.49 E-value=0.00021 Score=76.06 Aligned_cols=288 Identities=12% Similarity=0.090 Sum_probs=139.1
Q ss_pred ccccChhHHHHHhhcccccccchhccHhhhhhhcCch-HHHHHHHHHHHHHHHHHHHHHHhhccccCCchhhhHHHHhch
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFVTTGPVALQISGPS-VFISYIIAGISALLSSLCYTEFSVQIPVAGGAFSYLRVTFGE 145 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~s~~P~~GG~y~~~~~~~g~ 145 (587)
.|++++|...+-.+++.++...+......... .|.. ..+.|. +.+.....+..+...-.+. +.-..++|.++.||+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 48899998887777777765555444433323 4554 222222 2222223333333333332 334689999999999
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhCCCCCCCcccccccccccCCcchHHHHHHHH--HHHHHHHhhhhhh
Q 007861 146 FVGYFAGANILMEYVL-SNAAVARSFTDYLCHAVGENDPNSWRVEVDGLFKGYNMLDFPAVALVL--LLTLCLCHGTKES 222 (587)
Q Consensus 146 ~~g~~~g~~~~l~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~k~~ 222 (587)
....+.+....+.+++ ..+......+..++..++.. . ..++++.. .......-|.|..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~---~----------------~~~i~i~~~i~~~Yt~~GGl~aV 156 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIP---L----------------MYSILGLALFALVYSIYGGLSAV 156 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC---H----------------HHHHHHHHHHHHHTTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---H----------------HHHHHHHHHHHHHHHHhcchHHH
Confidence 8888777665544443 34444555566677776611 0 12222221 2223334477776
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccc----------------cccCccCC-CCCCC-----cchhHHHHHHHHHHHhccc
Q 007861 223 SILNLIMTIFHVVFFGFIIIAGFCNG----------------SVQNLVKP-GGLAP-----FGVKGIVDGAATVYFSYIG 280 (587)
Q Consensus 223 ~~~~~~~~~~~i~~~~~~~i~~~~~~----------------~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~~G 280 (587)
.+...+-.++.++..+++.+..+.+. +.+++... ++..+ .++...+.+.......|.|
T Consensus 157 ~~TD~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g 236 (530)
T 3dh4_A 157 VWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWG 236 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHc
Confidence 66666555555544433332222110 11111100 00011 1122111121112233445
Q ss_pred hhh-hhchhHhhcCcCCCcchHHHHHHHHHHHHHHH---HHHHHhhccc----------------CCcccccchHHHHHH
Q 007861 281 YDS-VSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSL---MALSLCLMVP----------------YNKILKDASFSMAFR 340 (587)
Q Consensus 281 ~e~-~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~---~~~~~~~~~~----------------~~~~~~~~~~~~~~~ 340 (587)
.+. ..+-.=..||+ |+..|+.+++.+....+.++ ..++.....+ ++..+++..++...+
T Consensus 237 ~~q~i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~ 315 (530)
T 3dh4_A 237 FNQYIIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ 315 (530)
T ss_dssp TTCHHHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT
T ss_pred CCHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH
Confidence 432 44444556776 56778887776554333221 1111111110 122234456666666
Q ss_pred HhChhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhcC
Q 007861 341 NIGWAWASNVVGAGASLGIVASLLVAMLGQARYLCVIGRAR 381 (587)
Q Consensus 341 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg 381 (587)
...+++.-++..+++.+..++..+.+++.+-. +++|=
T Consensus 316 -~lp~~l~Gl~~a~llAA~mST~ss~l~s~st~---~~~Di 352 (530)
T 3dh4_A 316 -FLPVGVKGVVFAALAAAIVSSLASMLNSTATI---FTMDI 352 (530)
T ss_dssp -TCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHT
T ss_pred -HcchhHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHhHH
Confidence 55577777887788888888888888777664 44553
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.54 E-value=0.042 Score=57.51 Aligned_cols=109 Identities=12% Similarity=0.180 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHhhhccccc----c----cCccCCCCCCCc-chhHHHHHHHHH
Q 007861 205 VALVLLLTLCLCHGT-KESSILNLIMTIFHVVFFGFIIIAGFCNGS----V----QNLVKPGGLAPF-GVKGIVDGAATV 274 (587)
Q Consensus 205 ~~~~~~~~~~~~~g~-k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~----~----~~~~~~~~~~~~-~~~~~~~~~~~~ 274 (587)
++..++..++..+|+ |...|.+.++...-.+.++++.+-++...+ . +.+.. +.+..- ....+..+..-+
T Consensus 173 ~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~-Pd~s~L~~~~vw~~A~gQ~ 251 (519)
T 2a65_A 173 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWT-PDFEKLKDPGVWIAAVGQI 251 (519)
T ss_dssp HHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHS-CCTTSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhc-CCHHHhCCHHHHHHHHHHH
Confidence 344445667778899 778999988888777777666665544322 1 01110 111111 123466777788
Q ss_pred HHhc-cchhhhhchhHhhcCcCCCcchHHHHHHHHHHHHHHH
Q 007861 275 YFSY-IGYDSVSTLAEEIQNPSKSLPLGIVGSVLIVSLLYSL 315 (587)
Q Consensus 275 ~~~~-~G~e~~~~~~~E~k~p~r~ip~ai~~~~~~~~v~y~~ 315 (587)
+|++ .|+.....++.-.|+ +.|++|............-++
T Consensus 252 FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 252 FFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 8888 588888888888776 468888777766665555443
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=94.72 E-value=4.6 Score=41.71 Aligned_cols=24 Identities=8% Similarity=0.052 Sum_probs=18.6
Q ss_pred ccccChhHHHHHhhcccccccchh
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVFV 90 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~~ 90 (587)
|-+++.++-+++.++.-+|.|+..
T Consensus 88 kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 88 KPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp CCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCccchHHHHHHHHhhhhHHhh
Confidence 446888999999998888877544
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=94.52 E-value=3.6 Score=42.76 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=19.0
Q ss_pred ccccChhHHHHHhhcccccccch
Q 007861 67 KRKLMWYDLVALGVGGMLGVGVF 89 (587)
Q Consensus 67 ~r~l~~~~~~~~~~~~~ig~gi~ 89 (587)
|-++|.++-++|.++.-+|.|+.
T Consensus 93 kPefS~~sW~aMlF~AGmGiGl~ 115 (539)
T 4ain_A 93 APEFRTVSWISMMFAAGMGIGLM 115 (539)
T ss_dssp CCSSCHHHHHHHHHTTSCCTHHH
T ss_pred CCCCcchHHHHHHHHHhhcchhe
Confidence 45689999999999988888765
No 10
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=61.03 E-value=1.5e+02 Score=30.25 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhhhhccc
Q 007861 540 FAMWTCLITLFYVLYGVH 557 (587)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~ 557 (587)
.+++++++.++|+.|+++
T Consensus 450 ~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 450 VVSFLVVLALPFILYAVH 467 (511)
T ss_dssp HHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 455555666666665443
No 11
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=30.05 E-value=64 Score=20.79 Aligned_cols=14 Identities=21% Similarity=0.014 Sum_probs=6.1
Q ss_pred HHHHHHhhhhcccc
Q 007861 545 CLITLFYVLYGVHS 558 (587)
Q Consensus 545 ~~~~~~~~~~~~~~ 558 (587)
+++..+|++++||+
T Consensus 25 ii~~~~~~~~RRRr 38 (44)
T 2l2t_A 25 IVGLTFAVYVRRKS 38 (44)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhh
Confidence 34444444444444
No 12
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=28.27 E-value=51 Score=21.26 Aligned_cols=14 Identities=0% Similarity=-0.157 Sum_probs=6.2
Q ss_pred HHHHHHhhhhcccc
Q 007861 545 CLITLFYVLYGVHS 558 (587)
Q Consensus 545 ~~~~~~~~~~~~~~ 558 (587)
++++.+|++++||+
T Consensus 26 ii~~~~~~~~RRr~ 39 (44)
T 2ks1_B 26 VVALGIGLFMRRRH 39 (44)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhhhH
Confidence 34444444444444
No 13
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=24.25 E-value=1.5e+02 Score=20.04 Aligned_cols=9 Identities=11% Similarity=0.457 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 007861 516 WPAAISIFL 524 (587)
Q Consensus 516 ~~~~~~~~~ 524 (587)
|+.+.++++
T Consensus 13 wiIi~svl~ 21 (54)
T 2knc_A 13 WWVLVGVLG 21 (54)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344333
No 14
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=20.66 E-value=9.4e+02 Score=27.11 Aligned_cols=50 Identities=14% Similarity=-0.015 Sum_probs=25.1
Q ss_pred HHHHhhHHHHHHhhhcCCCc-hHHhhhcCCCCcchHHHHHHHHHHHHHHhh
Q 007861 365 VAMLGQARYLCVIGRARLVP-TWLAKVHPSTGTPLNATLFLGLCTASIALF 414 (587)
Q Consensus 365 ~~~~~~sR~l~a~a~dg~lP-~~~~~~~~~~~~P~~a~~~~~~~~~~~~~~ 414 (587)
-.+....|+-..+.++|.=+ +...+-.++...|+....++.+++++..++
T Consensus 408 ~aIv~~~~~~~~~~~~g~~~~~A~~~a~~~~~~pi~~t~ltt~~~f~pl~~ 458 (1057)
T 4dx5_A 408 DAIVVVENVERVMAEEGLPPKEATRKSMGQIQGALVGIAMVLSAVFVPMAF 458 (1057)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGG
T ss_pred ceEEeHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566665555445433 222222224456766666666555544444
Done!