Query 007862
Match_columns 587
No_of_seqs 155 out of 1538
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 12:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/007862.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/007862hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aps_A DI-OR tripeptide H+ sym 100.0 1.6E-31 5.6E-36 290.7 24.4 463 8-566 4-477 (491)
2 2xut_A Proton/peptide symporte 100.0 1.3E-30 4.6E-35 286.1 21.9 485 13-569 8-511 (524)
3 1pw4_A Glycerol-3-phosphate tr 99.9 1.5E-26 5.1E-31 247.6 14.9 399 16-563 27-436 (451)
4 4gc0_A D-xylose-proton symport 99.9 2.7E-25 9.4E-30 241.3 11.5 429 36-575 30-477 (491)
5 3o7q_A L-fucose-proton symport 99.9 3.5E-24 1.2E-28 228.6 18.7 357 13-521 22-408 (438)
6 2gfp_A EMRD, multidrug resista 99.9 4.3E-22 1.5E-26 208.6 8.1 165 22-232 5-169 (375)
7 2cfq_A Lactose permease; trans 99.8 1.3E-21 4.4E-26 209.5 3.3 389 18-563 8-402 (417)
8 1pw4_A Glycerol-3-phosphate tr 99.3 5.5E-12 1.9E-16 134.3 10.5 177 17-236 252-432 (451)
9 3o7q_A L-fucose-proton symport 99.2 3E-11 1E-15 128.2 10.3 169 17-233 258-428 (438)
10 2cfq_A Lactose permease; trans 99.1 5.2E-11 1.8E-15 126.9 5.1 166 27-237 230-399 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.1 3.4E-10 1.2E-14 122.3 10.2 186 18-240 284-474 (491)
12 4gc0_A D-xylose-proton symport 98.9 3.7E-09 1.3E-13 114.0 10.0 183 17-239 276-464 (491)
13 2gfp_A EMRD, multidrug resista 98.7 2.9E-09 1E-13 110.7 2.2 164 18-225 200-364 (375)
14 2xut_A Proton/peptide symporte 98.0 1.7E-05 5.7E-10 86.1 10.1 135 383-558 58-196 (524)
No 1
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=1.6e-31 Score=290.66 Aligned_cols=463 Identities=16% Similarity=0.232 Sum_probs=297.3
Q ss_pred ccccCCCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHh-----hCCChhhHHHHHHHHHHHHHHHhhhhHHHhhc-cc
Q 007862 8 KDQKKPGGWKAMPYILGNETFERLATIGLLANFMVYLLKE-----YHMNQTSAANILNIWGGVTNFAPLLGAFISDT-YI 81 (587)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~-----~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~-~~ 81 (587)
++++.++++|.++.+....+++++++|++...++.|+.++ +|+|..+.+++.+++.++..++++++|+++|| +
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~- 82 (491)
T 4aps_A 4 KGKTFFGQPLGLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRII- 82 (491)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-
T ss_pred cchhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 4455667888999999999999999999999999999998 99999999999999999999999999999999 6
Q ss_pred cchhhhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccc
Q 007862 82 GRFKTITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGG 161 (587)
Q Consensus 82 Gr~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~ 161 (587)
|||+++.++.++..+ +.++++++. +.+.++++|+++|+|.|.
T Consensus 83 g~r~~~~~~~~~~~~------------~~~~~~~~~--------------------------~~~~~~~~~~l~g~~~~~ 124 (491)
T 4aps_A 83 GARPAVFWGGVLIML------------GHIVLALPF--------------------------GASALFGSIILIIIGTGF 124 (491)
T ss_dssp CHHHHHHHHHHHHHH------------HHHHHHSCC--------------------------STTHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH------------HHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHh
Confidence 999999999999999 887776654 567799999999999999
Q ss_pred ccccccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhcccee
Q 007862 162 IRPCSIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLY 241 (587)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~ 241 (587)
..|+..++++|++|+++ +.|++++++++...++|..++|.+++++.+..|||+.|++.++..+++++++++..+++
T Consensus 125 ~~~~~~~~~~~~~~~~~----~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~ 200 (491)
T 4aps_A 125 LKPNVSTLVGTLYDEHD----RRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKT 200 (491)
T ss_dssp HHHHHHHHHHHHSSSCT----THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHcCccc----ccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 99999999999999855 55888999999999999999999999999999999999998877777666655443332
Q ss_pred eeeC---CCCC-hhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCC
Q 007862 242 VLVE---PEGS-IFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPD 317 (587)
Q Consensus 242 ~~~~---~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 317 (587)
..++ +++. ...+..+. .+......-. ...... ........++.+................
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~----~~~~g~~l~~----~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 264 (491)
T 4aps_A 201 LDPHYLRPTDPLAPEEVKPL----LVKVSLAVAG----FIAIIV----VMNLVGWNSLPAYINLLTIVAIAIPVFY---- 264 (491)
T ss_dssp CCSCCSCCSCCCSHHHHHHH----HHHCCCCCHH----HHHHHH----HHHHHSSCCTTHHHHHHHHHHHHHHHHH----
T ss_pred ccccccCCCCccccchhHHH----HHHHHHHHHH----HHHHHH----HHHhccCcccccchhhhhHHHHHHHHHH----
Confidence 2211 1111 11110000 0000000000 000000 0000000000000000000000000000
Q ss_pred CCCCCccccccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeec-cccccCCCccccCcccccccchhhhhhhh
Q 007862 318 GTPVNQWRLCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAM-KMNRHLGPKFQIPPGTVGVISMITIGLWL 396 (587)
Q Consensus 318 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~i~~i~~~l~~ 396 (587)
....|+... ....++++......++.....++..+.+..+....+.. ..+... ...+.....+.+..++..
T Consensus 265 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 336 (491)
T 4aps_A 265 --FAWMISSVK-VTSTEHLRVVSYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSW-----FPVSWFQSLNPLFIMLYT 336 (491)
T ss_dssp --HHHHC-------------CTTHHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSS-----SCSGGGTTHHHHHHHHHH
T ss_pred --HHHHhhccc-ccHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCc-----cCHHHHhccchHHHHHHH
Confidence 000011000 01122333344445555555556655554443211111 111111 335566667777777777
Q ss_pred hchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHh
Q 007862 397 PFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNI 476 (587)
Q Consensus 397 ~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~ 476 (587)
++.+++ .+|+++|+ ......+..|+++.++++++......... .....+.+++++.+++.+++++...
T Consensus 337 ~~~~~l----~~r~~~r~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~~~ 404 (491)
T 4aps_A 337 PFFAWL----WTAWKKNQ--PSSPTKFAVGLMFAGLSFLLMAIPGALYG------TSGKVSPLWLVGSWALVILGEMLIS 404 (491)
T ss_dssp HHHHHH----HHHTTTC-----CHHHHHHHHHHHHHHHTTTHHHHHHCC------CCTTCCTHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHH----HHHHhccC--CCchHHHHHHHHHHHHHHHHHHHHHHhcC------CCCCccHHHHHHHHHHHHHHHHHHh
Confidence 776665 77776663 24556677888888888777665432100 0123467778888899999999999
Q ss_pred hhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHH
Q 007862 477 IGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVY 556 (587)
Q Consensus 477 ~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~ 556 (587)
+..++++.+.+|++.||+++|+.++...+|..+++.+.+.+.+. ++...|..++++++++.++
T Consensus 405 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~ 467 (491)
T 4aps_A 405 PVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-----------------SEVAYFSYFGLGSVVLGIV 467 (491)
T ss_dssp THHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-----------------STTHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----------------cHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776531 2345677788888877777
Q ss_pred HHHHHhhhcc
Q 007862 557 FLYCARRYRY 566 (587)
Q Consensus 557 ~~~~~~~~~~ 566 (587)
.+++.++.++
T Consensus 468 ~~~~~~~~~~ 477 (491)
T 4aps_A 468 LVFLSKRIQG 477 (491)
T ss_dssp HHHC------
T ss_pred HHHHHHHHHH
Confidence 7666655443
No 2
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.97 E-value=1.3e-30 Score=286.06 Aligned_cols=485 Identities=22% Similarity=0.340 Sum_probs=290.9
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhC------CChhhHHHHHHHHHHHHHHHhhhhHHHhhccc-cchh
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYH------MNQTSAANILNIWGGVTNFAPLLGAFISDTYI-GRFK 85 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~-Gr~~ 85 (587)
++++|.++.+.+..+++++++|++...++.|+++++| +|..+.+++.+++.++..++++++|+++|| + |||+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~~g~r~ 86 (524)
T 2xut_A 8 PKWPRQIPYIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADR-FFGKYN 86 (524)
T ss_dssp -----CCTHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTT-SSCSHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcchH
Confidence 4566788899999999999999999999999999999 999999999999999999999999999999 7 9999
Q ss_pred hhhHHHHHHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccc
Q 007862 86 TITFASIAAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPC 165 (587)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~ 165 (587)
++.++.++..+ +.+++.++.. +.+.++++|+++|++.|...|+
T Consensus 87 ~~~~~~~~~~~------------~~~~~~~~~~-------------------------~~~~~~~~~~l~g~~~~~~~~~ 129 (524)
T 2xut_A 87 TILWLSLIYCV------------GHAFLAIFEH-------------------------SVQGFYTGLFLIALGSGGIKPL 129 (524)
T ss_dssp HHHHHHHHHHH------------HHHHHHHTSS-------------------------CHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHH------------HHHHHHHhcc-------------------------cHHHHHHHHHHHHHhccccchh
Confidence 99999999888 7776655431 5677899999999999999999
Q ss_pred ccccccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeC
Q 007862 166 SIPFGVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVE 245 (587)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~ 245 (587)
..++++|.+|+++ +..+...+++++...++|..++|.+++++.+..+|++.|++.++..+++++++++.+++...++
T Consensus 130 ~~~~~~~~~~~~~---r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (524)
T 2xut_A 130 VSSFMGDQFDQSN---KSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMP 206 (524)
T ss_dssp HHHHHHHTCSTTT---TTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC
T ss_pred HHHHHHHHcCccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccC
Confidence 9999999999755 1112455666999999999999999999998899999999988887776666655444433222
Q ss_pred CCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHH----hhhccCCCCCCCCCCC
Q 007862 246 PEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKA----AMIVDNNELKPDGTPV 321 (587)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~ 321 (587)
+++++.....+.+....++++... . ...................+.++...+... ...... ...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~ 274 (524)
T 2xut_A 207 PEPKDPHGFLPVIRSALLTKVEGK-G----NIGLVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGF-------VGA 274 (524)
T ss_dssp --------------------CTTH-H----HHHHHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHH-------HHT
T ss_pred CCCccchhHHHHHHHHHhhhhccc-C----ccchhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcc-------ccc
Confidence 222211111111111111110000 0 000000000000000000000000000000 000000 000
Q ss_pred Cccc-------cccceeeehhhhhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhh
Q 007862 322 NQWR-------LCSIQQVEEVKCLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGL 394 (587)
Q Consensus 322 ~~w~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l 394 (587)
.+|+ .+......+.|+.......+.....++..+.+..+.+..+....+... + .+.+.+...+.+..++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~ 350 (524)
T 2xut_A 275 GASLQLERARKSHPDAAVDGVRSVLRILVLFALVTPFWSLFDQKASTWILQANDMVKPQ---W-FEPAMMQALNPLLVML 350 (524)
T ss_dssp GGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHHHHTTTSSTTTHHHHHHHHSCCCS---S-SCHHHHHTTSGGGHHH
T ss_pred chhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHhHHhcCCCe---e-ecHHHHHHHHHHHHHH
Confidence 1220 011112233444444444555555555555555554433322222110 0 1345566677788888
Q ss_pred hhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHH
Q 007862 395 WLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAF 474 (587)
Q Consensus 395 ~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~ 474 (587)
..++.+++..+..+|.++| .+..+.+..|+++.+++++.+........ .....+.+++++.+++.+++++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~g~~~~~ 421 (524)
T 2xut_A 351 LIPFNNFVLYPAIERMGVK---LTALRKMGAGIAITGLSWIVVGTIQLMMD------GGSALSIFWQILPYALLTFGEVL 421 (524)
T ss_dssp HGGGTTTC---------------CCHHHHHTHHHHHHHHHHTTTTTTTTTT------TTCCCCSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhhhHHHHHhcCCC---CChHHHHHHHHHHHHHHHHHHHHHHHHhc------CCCCcCHHHHHHHHHHHHHHHHH
Confidence 8888888765655655333 24556777888888877776654321100 01134677788889999999999
Q ss_pred HhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccC-CCCCcchhHHHHHHHHHHHHH
Q 007862 475 NIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTN-DIDAGRLDYFYFLIAGLGGLN 553 (587)
Q Consensus 475 ~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~-~~~~~~~~~~f~~~~~~~~l~ 553 (587)
..+..+++..+.+|++.||+++|+.++..++|+.+++.+.+.+.+.+ ..+|... .. +...+.|++.+++.+++
T Consensus 422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 495 (524)
T 2xut_A 422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGM--SVTAFQMFFFAGFAILA 495 (524)
T ss_dssp HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccccccccc--cccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998876432 0123110 00 01123377778888888
Q ss_pred HHHHHHHHhhhccccC
Q 007862 554 IVYFLYCARRYRYKSG 569 (587)
Q Consensus 554 ~v~~~~~~~~~~~~~~ 569 (587)
.++++++.+++++++.
T Consensus 496 ~~~~~~~~~~~~~~~~ 511 (524)
T 2xut_A 496 AIVFALYARSYQMQDH 511 (524)
T ss_dssp HHHHC-----------
T ss_pred HHHHHHHHHHhccchh
Confidence 8777777766655443
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.94 E-value=1.5e-26 Score=247.65 Aligned_cols=399 Identities=11% Similarity=-0.026 Sum_probs=248.6
Q ss_pred ccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 16 WKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
|+.++......++..+..+.....+ +++.+++ .|..+.+++.+++.++..++.+++|+++|| +|||++++++.++..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr-~g~r~~l~~~~~~~~ 103 (451)
T 1pw4_A 27 WQIFLGIFFGYAAYYLVRKNFALAM-PYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDR-SNPRVFLPAGLILAA 103 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHH-HHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHh-cCchHHHHHHHHHHH
Confidence 3444444555555555555444444 4567778 999999999999999999999999999999 599999999999999
Q ss_pred HhhhcccccccccceEEEee----eccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccc
Q 007862 96 LLAEHFVTKYQGKGMLTVTL----TAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGV 171 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~ 171 (587)
+ +.+++++ +. +++.++++|+++|++.|...++..++++
T Consensus 104 ~------------~~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~i~ 145 (451)
T 1pw4_A 104 A------------VMLFMGFVPWATS--------------------------SIAVMFVLLFLCGWFQGMGWPPCGRTMV 145 (451)
T ss_dssp H------------HHHHHHHCHHHHS--------------------------SSSHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred H------------HHHHHHhhhhccc--------------------------cHHHHHHHHHHHHHHhhhccchHHHHHH
Confidence 9 8887777 44 5667999999999999999999999999
Q ss_pred ccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCCh
Q 007862 172 DQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSI 250 (587)
Q Consensus 172 ~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (587)
|.+|+++ |++++++.....++|..++|.+++++.+..+ ||+.|++.+++.++..++.++..++.+...... +
T Consensus 146 ~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 218 (451)
T 1pw4_A 146 HWWSQKE------RGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLP-P 218 (451)
T ss_dssp TTCTTTH------HHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCC-S
T ss_pred HHCCchh------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCC-C
Confidence 9999754 9999999999999999999999999888888 999999988776665554433333211100000 0
Q ss_pred hhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccce
Q 007862 251 FSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQ 330 (587)
Q Consensus 251 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 330 (587)
. .+ .. ....++. . + ...+..+++.....
T Consensus 219 ~------------------~~---~~-----~~~~~~~--------------------~--~----~~~~~~~~~~~~~~ 246 (451)
T 1pw4_A 219 I------------------EE---YK-----NDYPDDY--------------------N--E----KAEQELTAKQIFMQ 246 (451)
T ss_dssp C------------------TT---TC-----CC---------------------------------------CCTHHHHH
T ss_pred h------------------hh---hc-----ccccccc--------------------h--h----hhhcccccccchHH
Confidence 0 00 00 0000000 0 0 00000000000000
Q ss_pred eeehhhhhhhhhHH-HHHHHHHHhhhccccceeeeeeccccccCCCccccCc---ccccccchhhhhhhhhchhhhhHHH
Q 007862 331 QVEEVKCLIKIIPI-WAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPP---GTVGVISMITIGLWLPFYDTVLVPA 406 (587)
Q Consensus 331 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~~i~~i~~~l~~~l~~~l~~~l 406 (587)
.....+.++..... +.....+...... .+.+. ....+ .++ +.+.....++.++..++..++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~g~l---- 311 (451)
T 1pw4_A 247 YVLPNKLLWYIAIANVFVYLLRYGILDW-SPTYL------KEVKH----FALDKSSWAYFLYEYAGIPGTLLCGWM---- 311 (451)
T ss_dssp HTSSCHHHHHHHHHHHHHHHHHHHHHHH-HHHHB------TTBSC----CCHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHH-HHHHH------HHhcC----CCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 00001111111111 1111111111111 11111 11111 111 233344445555555554444
Q ss_pred hhhhhcCCCCCChHHHHHHHHHHHH-HHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHh
Q 007862 407 LRKITKHEGGITLLQRIGIGMIFSI-LSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNK 485 (587)
Q Consensus 407 ~~r~~~r~~~~~~~~~i~~G~i~~~-~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~ 485 (587)
.||+.+ .+++.+..+.++.. ++++.+... ...+.+.+....++.+++.....+....+..+
T Consensus 312 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 373 (451)
T 1pw4_A 312 SDKVFR-----GNRGATGVFFMTLVTIATIVYWMN-------------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALE 373 (451)
T ss_dssp HHHTST-----TCHHHHHHHHHHHHHHHHHHTTSC-------------CTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHhc-----CCchhHHHHHHHHHHHHHHHHHHh-------------cccCHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence 666511 12233444444333 444443321 11245556667778888888888888999999
Q ss_pred hCCchhhHHHHHHHHHHHHH-HHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 486 QFPDHMKSIANSLLFCSFGF-ASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 486 ~~P~~~rg~~~gl~~~~~~l-g~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
.+|++.||+++|+.+....+ |..+++.+.+.+.+.. ++...|...+++.+++.+..++..++
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~----------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF----------------GWDGGFMVMIGGSILAVILLIVVMIG 436 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS----------------CSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999 9999999998887532 34567788888888777766655443
No 4
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.92 E-value=2.7e-25 Score=241.26 Aligned_cols=429 Identities=11% Similarity=0.031 Sum_probs=233.3
Q ss_pred hHHHHHHHHHHhhC--------CChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccccccc
Q 007862 36 LLANFMVYLLKEYH--------MNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVTKYQG 107 (587)
Q Consensus 36 ~~~~~~~yl~~~~~--------~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~ 107 (587)
+.....++++++++ .++++.+++.+++.++..++++++|+++|| +|||++++++.+++++
T Consensus 30 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr-~GRk~~l~~~~~l~~i----------- 97 (491)
T 4gc0_A 30 VISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNR-FGRRDSLKIAAVLFFI----------- 97 (491)
T ss_dssp GGGGTHHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH-----------
Confidence 33444456666653 234567899999999999999999999999 5999999999999999
Q ss_pred cceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCcccccchhh
Q 007862 108 KGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVKGINS 187 (587)
Q Consensus 108 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~~r~~ 187 (587)
+.++++++.......... ..-...-..++..++++|+++|+|.|+..++++.+++|..|+++ |++
T Consensus 98 -~~i~~a~~~~~~~~~~~~--------~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~------rg~ 162 (491)
T 4gc0_A 98 -SGVGSAWPELGFTSINPD--------NTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHI------RGK 162 (491)
T ss_dssp -HHHHHHCTTTTTSCSSSS--------SSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGG------HHH
T ss_pred -HHHHHHHHhhhhhhhcch--------hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHh------hhh
Confidence 877766532110000000 00000012378899999999999999999999999999999855 999
Q ss_pred hhhHHHHHHHHHHHHHhhhhhhccc--------ccchhhHHHHHHHHHHHHHHHHHhccceee---eeCCCCChhhhHHH
Q 007862 188 FFNWYYTTFTVVILITQTVLVYIQD--------SVSWVIGFGIPTVLMIGAIILFLVGKKLYV---LVEPEGSIFSGIGQ 256 (587)
Q Consensus 188 ~~~~~~~~~~~g~~i~~~~~~~i~~--------~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 256 (587)
..++......+|..+++.++..+.. ...||+.+.+..+..++.++..+. .++.+ ..+.+........+
T Consensus 163 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~~a~~~l~ 241 (491)
T 4gc0_A 163 LVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQEQAEGILR 241 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHHHHHHHHH
T ss_pred hHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchhHHHHhHH
Confidence 9999999999999999888766543 245777777766655544443322 11110 00000000000000
Q ss_pred HHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeehhh
Q 007862 257 VLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVK 336 (587)
Q Consensus 257 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~ 336 (587)
....+... ++.....+...... + .+. ........+
T Consensus 242 ---~~~~~~~~-----------------------------~~~~~~~~~~~~~~-~---------~~~---~~~~~~~~~ 276 (491)
T 4gc0_A 242 ---KIMGNTLA-----------------------------TQAVQEIKHSLDHG-R---------KTG---GRLLMFGVG 276 (491)
T ss_dssp ---HHHHHHHH-----------------------------HHHHHHHHHHHHHH-H---------HHT---THHHHSCCT
T ss_pred ---HhcCCchh-----------------------------HHHHHHHHHHHHhh-h---------hhh---hHHHHhccc
Confidence 00000000 00000000000000 0 000 000000011
Q ss_pred hhhhhhHHHHHHHHHHhhhccccceeeeeeccccccCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhcCCCC
Q 007862 337 CLIKIIPIWAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITKHEGG 416 (587)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~ 416 (587)
.......... +..+........+...... ..+ ...........+..+..++...+ ...+.||++||
T Consensus 277 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~dr~Grr--- 342 (491)
T 4gc0_A 277 VIVIGVMLSI-----FQQFVGINVVLYYAPEVFK-TLG-ASTDIALLQTIIVGVINLTFTVL----AIMTVDKFGRK--- 342 (491)
T ss_dssp HHHHHHHHHH-----HHHHTCHHHHHHHHHHHHH-HSS-CCHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCSH---
T ss_pred HHHHHHHHHH-----HHHHhhhhHHHhcchHHHH-hcC-CCccchhhHHHHHHHHHHHHHHH----HHHHHHhhcCc---
Confidence 1111100000 0000000000000000000 010 00000111112222233333333 33346776443
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHH
Q 007862 417 ITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIAN 496 (587)
Q Consensus 417 ~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~ 496 (587)
+.+..+.....++++..+..... ...+...++..+++.........|..+.+..|.+|++.|++++
T Consensus 343 ----~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~ 408 (491)
T 4gc0_A 343 ----PLQIIGALGMAIGMFSLGTAFYT----------QAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKAL 408 (491)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHH
T ss_pred ----chhccchHHHHHHHHHHHHHHhc----------ccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHH
Confidence 55566666666666555543221 1112222222223333334445677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhhccccCcccccc
Q 007862 497 SLLFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARRYRYKSGIQSLED 575 (587)
Q Consensus 497 gl~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~ 575 (587)
|+.+..+++++.+++.+.|.+.... |... ..+....|++++++++++.++.+++.||+|+++.||.++.
T Consensus 409 g~~~~~~~~~~~i~~~~~p~l~~~~-------~~~~---~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~ 477 (491)
T 4gc0_A 409 AIAVAAQWLANYFVSWTFPMMDKNS-------WLVA---HFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEELEAL 477 (491)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHCHHH-------HHHH---HHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------HHHh---hhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHHHHH
Confidence 9999999999999998887765321 0000 0012356788899999999999999999999999887655
No 5
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.91 E-value=3.5e-24 Score=228.59 Aligned_cols=357 Identities=9% Similarity=-0.007 Sum_probs=228.8
Q ss_pred CCCccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHH
Q 007862 13 PGGWKAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASI 92 (587)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~ 92 (587)
+++++.+..+....++..+... ....+.+++.+++|.|..+.+++.+++.++..++.+++|+++|| +|||++++++.+
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr-~g~r~~l~~~~~ 99 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANN-LNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKK-LSYKAGIITGLF 99 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHH-hcchHHHHHHHH
Confidence 4445555555555555555554 44555556899999999999999999999999999999999999 599999999999
Q ss_pred HHHHhhhcccccccccceEEE---eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPF 169 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~ 169 (587)
+..+ +.++. ..+. +++.++++|++.|+|.|...+...++
T Consensus 100 ~~~~------------~~~~~~~~~~~~--------------------------~~~~l~~~~~l~G~~~~~~~~~~~~~ 141 (438)
T 3o7q_A 100 LYAL------------GAALFWPAAEIM--------------------------NYTLFLVGLFIIAAGLGCLETAANPF 141 (438)
T ss_dssp HHHH------------HHHHHHHHHHTT--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------------HHHHHHhccccc--------------------------cHHHHHHHHHHHHhhHHHhhhhHHHH
Confidence 9999 88777 4433 78889999999999999999999999
Q ss_pred ccccCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcc-cccc-------------------------hhhHHHHH
Q 007862 170 GVDQFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQ-DSVS-------------------------WVIGFGIP 223 (587)
Q Consensus 170 ~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~-~~~~-------------------------w~~~f~i~ 223 (587)
++|.+|+++ |++.++++....++|..++|.+++++. +..+ ||+.|++.
T Consensus 142 ~~~~~~~~~------r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 215 (438)
T 3o7q_A 142 VTVLGPESS------GHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMII 215 (438)
T ss_dssp HHHSSCSTT------HHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCchh------HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHH
Confidence 999999865 999999999999999999999999998 5554 99999876
Q ss_pred HHHHHHHHHHHHhccceeeeeCCCCChhhhHHHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHH
Q 007862 224 TVLMIGAIILFLVGKKLYVLVEPEGSIFSGIGQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLN 303 (587)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 303 (587)
++..++..++++..+. |+..+. .++ +.+ .....
T Consensus 216 ~~~~~~~~~~~~~~~~------p~~~~~-----------------~~~---~~~----------------~~~~~----- 248 (438)
T 3o7q_A 216 VAIVLLVALLIMLTKF------PALQSD-----------------NHS---DAK----------------QGSFS----- 248 (438)
T ss_dssp HHHHHHHHHHHHHCCC------CCCTTT-----------------CCC---CSS----------------TTSHH-----
T ss_pred HHHHHHHHHHHHHHcC------Cccccc-----------------ccc---ccc----------------ccchh-----
Confidence 6655554444333211 110000 000 000 00000
Q ss_pred HHhhhccCCCCCCCCCCCCccccccceeeehhhhhhhhhHH-HHHHHHHHhhhccccceeeeeeccccccCCCccccCcc
Q 007862 304 KAAMIVDNNELKPDGTPVNQWRLCSIQQVEEVKCLIKIIPI-WAAGIISLTSISQQGTFTVSQAMKMNRHLGPKFQIPPG 382 (587)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 382 (587)
.+++. .-..+.++..+.. +...........+.+.+...+..+.+. ...+
T Consensus 249 ------------------~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-------~~~~ 298 (438)
T 3o7q_A 249 ------------------ASLSR-----LARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTA-------GFAA 298 (438)
T ss_dssp ------------------HHHHH-----HTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCH-------HHHH
T ss_pred ------------------hhHHH-----HHhChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcch-------hHHH
Confidence 00000 0001111111111 111111111111111110111101110 0112
Q ss_pred cccccchhhhhhhhhchhhhhHHHhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHH
Q 007862 383 TVGVISMITIGLWLPFYDTVLVPALRKITKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLA 462 (587)
Q Consensus 383 ~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li 462 (587)
.......+..++..++..++ .||+ ++++.+..+.++..++.+..... +..+..
T Consensus 299 ~~~~~~~~~~~~~~~~~g~l----~~r~-------~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~ 351 (438)
T 3o7q_A 299 NYLTGTMVCFFIGRFTGTWL----ISRF-------APHKVLAAYALIAMALCLISAFA----------------GGHVGL 351 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHS-------CHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHh-------cchHHHHHHHHHHHHHHHHHHHc----------------CCcHHH
Confidence 33333444445555544444 6665 34456666666666666555432 112334
Q ss_pred HHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 007862 463 PQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSLLFCSFGFASYLSSLLITIVHGVT 521 (587)
Q Consensus 463 ~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl~~~~~~lg~~l~~~l~~~v~~~~ 521 (587)
..+++.+++.+...|..+.+..+.+|++ ++.++++.. ...+|..+++.+.+.+.+..
T Consensus 352 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~ 408 (438)
T 3o7q_A 352 IALTLCSAFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAA 408 (438)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 4557788899999999999999999987 899999877 67799999999998887643
No 6
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.85 E-value=4.3e-22 Score=208.62 Aligned_cols=165 Identities=15% Similarity=0.176 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcc
Q 007862 22 ILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHF 101 (587)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~ 101 (587)
+....++..+........++ .+.+++|.|..+.+++.+++.++..++.+++|+++|| +||||++.++.++..+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~r~~~~~~~~~~~~----- 77 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIA-DMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDR-VGRRPVILVGMSIFML----- 77 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTT-SCCCCCCHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHHHhhhhH-HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchhHHHHHHHHHH-----
Confidence 34445555555554555554 4678999999999999999999999999999999999 5999999999999999
Q ss_pred cccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccc
Q 007862 102 VTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEG 181 (587)
Q Consensus 102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~ 181 (587)
+.++..++. +.+.+++.|++.|++.+...+...+++.|.+|+++
T Consensus 78 -------~~~~~~~~~--------------------------~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~--- 121 (375)
T 2gfp_A 78 -------ATLVAVTTS--------------------------SLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQ--- 121 (375)
T ss_dssp -------HHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS---
T ss_pred -------HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHH---
Confidence 877776655 77889999999999999999999999999999755
Q ss_pred ccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHH
Q 007862 182 VKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAII 232 (587)
Q Consensus 182 ~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~ 232 (587)
|++.++++....++|..++|.+++++.+..+||+.|++.++..++..+
T Consensus 122 ---~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 169 (375)
T 2gfp_A 122 ---LRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTF 169 (375)
T ss_dssp ---CCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999989999999987776555443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.82 E-value=1.3e-21 Score=209.51 Aligned_cols=389 Identities=11% Similarity=0.018 Sum_probs=219.5
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHh
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILL 97 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~ 97 (587)
..+......++...++....++++.|+++++|+|..+.+++.+++.++..++++++|+++|| +||||+++++.+++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr-~Grr~~l~~~~~~~~~- 85 (417)
T 2cfq_A 8 NFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDK-LGLRKYLLWIITGMLV- 85 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTT-STTCCHHHHHHHHTTS-
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHHH-
Confidence 45556666666667777778899999999999999999999999999999999999999999 5999999998887655
Q ss_pred hhcccccccccceEEE---eeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccC
Q 007862 98 AEHFVTKYQGKGMLTV---TLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQF 174 (587)
Q Consensus 98 ~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~ 174 (587)
+.... .++.. ....++.++.+.+++.|...+...+...+..
T Consensus 86 -----------~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 129 (417)
T 2cfq_A 86 -----------MFAPFFIFIFGPL-------------------------LQYNILVGSIVGGIYLGFCFNAGAPAVEAFI 129 (417)
T ss_dssp -----------CHHHHHHHTHHHH-------------------------HHTTCCHHHHGGGSSTTHHHHTTHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 32111 11100 0001234555556666555555555554444
Q ss_pred CCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccceeeeeCCCCChhhhH
Q 007862 175 DATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKLYVLVEPEGSIFSGI 254 (587)
Q Consensus 175 ~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (587)
++. .++++..++..+...++|..++|.+++++.+ .+|++.|++.++..++.++..+..+++ +++. ..
T Consensus 130 ~~~----~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~----~~~~-~~--- 196 (417)
T 2cfq_A 130 EKV----SRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGCALILAVLLFFAKTD----APSS-AT--- 196 (417)
T ss_dssp HHH----HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCC----CSCS-SC---
T ss_pred HHh----hhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHHHHHHHHHHHHcCcc----cccc-cc---
Confidence 321 1235666777777789999999999999876 589999987665543333322221111 0000 00
Q ss_pred HHHHHHHHHhccccCCCCCCCCCccccCCCCccccccCCCCCcchhHHHHHhhhccCCCCCCCCCCCCccccccceeeeh
Q 007862 255 GQVLVAAYKKRRLTLPQGQMDHHGIFYDPPPKLFVLSKLPLTHQFRFLNKAAMIVDNNELKPDGTPVNQWRLCSIQQVEE 334 (587)
Q Consensus 255 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 334 (587)
.++ ..+ +. . +..+.. .++. ...
T Consensus 197 --------------~~~---~~~--------~~------~--~~~~~~--------------------~~~~----~~~- 218 (417)
T 2cfq_A 197 --------------VAN---AVG--------AN------H--SAFSLK--------------------LALE----LFR- 218 (417)
T ss_dssp --------------SSS---SSS--------SC------C--CCCCHH--------------------HHHH----HTT-
T ss_pred --------------ccc---ccc--------cc------c--ccccHH--------------------HHHH----Hhc-
Confidence 000 000 00 0 000000 0000 000
Q ss_pred hhhhhhhhHHHHHHHHHHhhhccc-cceeeeeeccccc-cCCCccccCcccccccchhhhhhhhhchhhhhHHHhhhhhc
Q 007862 335 VKCLIKIIPIWAAGIISLTSISQQ-GTFTVSQAMKMNR-HLGPKFQIPPGTVGVISMITIGLWLPFYDTVLVPALRKITK 412 (587)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~i~~~~~~~i~~i~~~l~~~l~~~l~~~l~~r~~~ 412 (587)
.+.++............+..+.+. +.++. . ..+. ..+ ....+....++.+..++...+..++ .||++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~---~~~~g~~~~~~~~~~~~~~~~~g~l----~dr~g- 287 (417)
T 2cfq_A 219 QPKLWFLSLYVIGVSCTYDVFDQQFANFFT-S--FFATGEQG---TRVFGYVTTMGELLNASIMFFAPLI----INRIG- 287 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--TSSSHHHH---THHHHHHHHHHHHHHHHHHHHHHHH----HHHHC-
T ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHHH-H--HHhccCCC---hhHHHHHHHHHHHHHHHHHHHHHHH----HHHhc-
Confidence 011111111111111111112111 11111 0 0000 000 0001222333444444444544444 67763
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHHHHHHHHHHHHHHHHhhhhHHHHHhhCCchhh
Q 007862 413 HEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWLAPQLILMGFCEAFNIIGQIEFFNKQFPDHMK 492 (587)
Q Consensus 413 r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~li~~~~l~~~ge~~~~~~~~~~~~~~~P~~~r 492 (587)
+++.+..+.++.+++++..... .+.+.++...++.+++.....+..+.+..|.+|++.|
T Consensus 288 ------~~~~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 346 (417)
T 2cfq_A 288 ------GKNALLLAGTIMSVRIIGSSFA---------------TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHTTC---------------CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
Confidence 3345556666666655444321 2334444455556666666677778899999999999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh
Q 007862 493 SIANSL-LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGRLDYFYFLIAGLGGLNIVYFLYCARR 563 (587)
Q Consensus 493 g~~~gl-~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~~~~~f~~~~~~~~l~~v~~~~~~~~ 563 (587)
|++.++ ++..+++|+.+++.+.+.+.+.. ++...|...+++.+++.+..++..++
T Consensus 347 g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~----------------g~~~~f~~~~~~~l~~~~~~~~~~~~ 402 (417)
T 2cfq_A 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESI----------------GFQGAYLVLGLVALGFTLISVFTLSG 402 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHTHHHHTHHHHS----------------HHHHHHHHHHHHHHHHHHHHTTSSCC
T ss_pred HHHHHHHHHHHHhHHHHHhhhhHHHHHHhc----------------CcHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 999998 47888899999999988776421 35567777777777777665544443
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.29 E-value=5.5e-12 Score=134.25 Aligned_cols=177 Identities=15% Similarity=0.098 Sum_probs=149.8
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccc--cchhhhhHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYI--GRFKTITFASIAA 94 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~--Gr~~~~~~~~~~~ 94 (587)
|.++......++....++++..+++.|+++.+|.+..+.+++.....++..++.+++|+++|| + |||+++.++.++.
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~-~~~~~~~~~~~~~~~~ 330 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK-VFRGNRGATGVFFMTL 330 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhHHHHHHHH
Confidence 456777778888888889999999999998899999999999999999999999999999999 8 9999998887776
Q ss_pred H-HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhcccccccccccccccc
Q 007862 95 I-LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQ 173 (587)
Q Consensus 95 ~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~ 173 (587)
. + +.++..+.. ..+.+.+.+..++.|++.++..+....++.|.
T Consensus 331 ~~~------------~~~~~~~~~------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 374 (451)
T 1pw4_A 331 VTI------------ATIVYWMNP------------------------AGNPTVDMICMIVIGFLIYGPVMLIGLHALEL 374 (451)
T ss_dssp HHH------------HHHHTTSCC------------------------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHT
T ss_pred HHH------------HHHHHHHhc------------------------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 6 5 554443322 01456677778889999999999889999999
Q ss_pred CCCCCcccccchhhhhhHHHHHHHH-HHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHh
Q 007862 174 FDATTDEGVKGINSFFNWYYTTFTV-VILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLV 236 (587)
Q Consensus 174 ~~~~~~~~~~~r~~~~~~~~~~~~~-g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~ 236 (587)
+|+++ |+++++++....++ |..++|.+.+++.+..||+..|++.+++.+++.++.+.
T Consensus 375 ~~~~~------~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 432 (451)
T 1pw4_A 375 APKKA------AGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV 432 (451)
T ss_dssp SCTTH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hchhh------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99754 99999999999999 99999999999999999999999888777776665544
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.20 E-value=3e-11 Score=128.25 Aligned_cols=169 Identities=13% Similarity=0.054 Sum_probs=136.1
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHH-HHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVY-LLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAI 95 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~y-l~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~ 95 (587)
|.++......++.....+++..+++.| +++.+|++..+++++..+..++..++.+++|+++|| +|||+++.++.++..
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r-~~~~~~~~~~~~~~~ 336 (438)
T 3o7q_A 258 RHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAM 336 (438)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcchHHHHHHHHHHH
Confidence 456666677777777888888999999 888889999999999999999999999999999999 699999999998888
Q ss_pred HhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCC
Q 007862 96 LLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFD 175 (587)
Q Consensus 96 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~ 175 (587)
+ +.++..+.. +... +....+.+++.+...|...++..|.+|
T Consensus 337 ~------------~~~~~~~~~--------------------------~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~ 377 (438)
T 3o7q_A 337 A------------LCLISAFAG--------------------------GHVG-LIALTLCSAFMSIQYPTIFSLGIKNLG 377 (438)
T ss_dssp H------------HHHHHHHCC--------------------------HHHH-HHHHHHHHHHHTTHHHHHHHHHHSSCG
T ss_pred H------------HHHHHHHcC--------------------------CcHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 8 665555433 3333 334478889999999999999899888
Q ss_pred CCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccc-hhhHHHHHHHHHHHHHHH
Q 007862 176 ATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVS-WVIGFGIPTVLMIGAIIL 233 (587)
Q Consensus 176 ~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~-w~~~f~i~~~~~~~~~~~ 233 (587)
++ ++.+.++.. ...+|..++|.+.|++.+..| ++..|.+..+..++.++.
T Consensus 378 ~~-------~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 428 (438)
T 3o7q_A 378 QD-------TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIF 428 (438)
T ss_dssp GG-------HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHH
T ss_pred cc-------ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 42 566666555 567999999999999999988 999999876655544433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.08 E-value=5.2e-11 Score=126.91 Aligned_cols=166 Identities=7% Similarity=0.040 Sum_probs=122.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHhhCC---ChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHHhhhcccc
Q 007862 27 TFERLATIGLLANFMVYLLKEYHM---NQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAILLAEHFVT 103 (587)
Q Consensus 27 ~~~~~~~~~~~~~~~~yl~~~~~~---s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~~~~~~~~ 103 (587)
++....++.....++.|+.+.++. +....+.+..+..++..++.+++|+++|| +|||+++.++.++..+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr-~g~~~~l~~~~~~~~~------- 301 (417)
T 2cfq_A 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINR-IGGKNALLLAGTIMSV------- 301 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-hcHHHHHHHHHHHHHH-------
Confidence 333344444445678888776653 24455677777777888899999999999 6999999988888777
Q ss_pred cccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCCCCccccc
Q 007862 104 KYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDATTDEGVK 183 (587)
Q Consensus 104 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~~~~~~~~ 183 (587)
+.++.++.. +...+++...+.+++.+...+....++.|.+|++.
T Consensus 302 -----~~~~~~~~~--------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~----- 345 (417)
T 2cfq_A 302 -----RIIGSSFAT--------------------------SALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRF----- 345 (417)
T ss_dssp -----HHHHHTTCC--------------------------SHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHH-----
T ss_pred -----HHHHHHHhc--------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH-----
Confidence 654443322 34455666666777777777777889999999744
Q ss_pred chhhhhhHH-HHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhc
Q 007862 184 GINSFFNWY-YTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVG 237 (587)
Q Consensus 184 ~r~~~~~~~-~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~ 237 (587)
|++++++. ....++|..++|.++|++.+..|+...|.+.++..+++.++.+..
T Consensus 346 -~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~ 399 (417)
T 2cfq_A 346 -SATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFT 399 (417)
T ss_dssp -HHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhh
Confidence 89998884 677789999999999999988899999988777777666655443
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.05 E-value=3.4e-10 Score=122.29 Aligned_cols=186 Identities=9% Similarity=-0.011 Sum_probs=138.9
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhh-----HHHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTIT-----FASI 92 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~-----~~~~ 92 (587)
..+......++....+......++.|+.+.++.+..+.+++.....+...++.++.|+++|| +|||+... ++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r-~~~r~~~~~~~~~~~~~ 362 (491)
T 4aps_A 284 SYIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTA-WKKNQPSSPTKFAVGLM 362 (491)
T ss_dssp THHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHH-TTTC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHH-HhccCCCchHHHHHHHH
Confidence 34555556666667777788889999999899887888888999999999999999999999 69987766 7777
Q ss_pred HHHHhhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccc
Q 007862 93 AAILLAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVD 172 (587)
Q Consensus 93 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~ 172 (587)
+..+ +.++..+...... .....+...+++..++.++|.+...|....++.|
T Consensus 363 ~~~~------------~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~ 413 (491)
T 4aps_A 363 FAGL------------SFLLMAIPGALYG-----------------TSGKVSPLWLVGSWALVILGEMLISPVGLSVTTK 413 (491)
T ss_dssp HHHH------------HHTTTHHHHHHCC-----------------CCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHHH------------HHHHHHHHHHhcC-----------------CCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 7766 6555544321000 0011245667788889999999999999999999
Q ss_pred cCCCCCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHHHHHHHHHHHHhccce
Q 007862 173 QFDATTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTVLMIGAIILFLVGKKL 240 (587)
Q Consensus 173 ~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~~~~~~~~~~~~~~~~ 240 (587)
.+|++. |+++.++++...++|..+++.+.+++.+. ++...|.+.++..+++.++.++..++
T Consensus 414 ~~p~~~------~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (491)
T 4aps_A 414 LAPKAF------NSQMMSMWFLSSSVGSALNAQLVTLYNAK-SEVAYFSYFGLGSVVLGIVLVFLSKR 474 (491)
T ss_dssp HTTTTC------SSSSTHHHHHHHHHHHHHHHHHGGGGGGS-STTHHHHHTHHHHHHHHHHHHHC---
T ss_pred hCCHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999865 99999999999999999999999988764 67777877776666666555554443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=98.88 E-value=3.7e-09 Score=114.00 Aligned_cols=183 Identities=10% Similarity=0.032 Sum_probs=125.0
Q ss_pred cchhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHHHHH
Q 007862 17 KAMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIAAIL 96 (587)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~~~~ 96 (587)
+.........++..+..+.......+++.+..+.+.........+..+...++.++++++.|| +|||+.++.+.....+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr-~Grr~~~~~~~~~~~~ 354 (491)
T 4gc0_A 276 GVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDK-FGRKPLQIIGALGMAI 354 (491)
T ss_dssp THHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCSHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHh-hcCcchhccchHHHHH
Confidence 334444445555555555555566667788889998888888888888999999999999999 5999999998888777
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+.+.++...... ......++...+.......+..|....+.+|.+|+
T Consensus 355 ------------~~~~l~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt 401 (491)
T 4gc0_A 355 ------------GMFSLGTAFYTQ---------------------APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPN 401 (491)
T ss_dssp ------------HHHHHHHHHHTT---------------------CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCT
T ss_pred ------------HHHHHHHHHhcc---------------------cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCH
Confidence 655544322100 01222222222222222233456777899999998
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccc------cchhhHHHHHHHHHHHHHHHHHhccc
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDS------VSWVIGFGIPTVLMIGAIILFLVGKK 239 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~------~~w~~~f~i~~~~~~~~~~~~~~~~~ 239 (587)
+. |+++.++.....++++.+++.+.+++.+. .++.+.|++.+++.+++.+..++..|
T Consensus 402 ~~------R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~P 464 (491)
T 4gc0_A 402 AI------RGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVP 464 (491)
T ss_dssp TT------HHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheec
Confidence 66 99999999999999999998887776543 34556777777776666665555444
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.71 E-value=2.9e-09 Score=110.71 Aligned_cols=164 Identities=9% Similarity=0.011 Sum_probs=127.4
Q ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCChhhHHHHHHHHHHHHHHHhhhhHHHhhccccchhhhhHHHHH-HHH
Q 007862 18 AMPYILGNETFERLATIGLLANFMVYLLKEYHMNQTSAANILNIWGGVTNFAPLLGAFISDTYIGRFKTITFASIA-AIL 96 (587)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~s~~~~~~i~~~~~~~~~~~~~~~G~laD~~~Gr~~~~~~~~~~-~~~ 96 (587)
.++......++...++++...+++.|+++++|.+..+.+.+.....++..++.++.|+++|| +||+ +..+..+ ...
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r-~~~~--~~~~~~~~~~~ 276 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKR-FSTL--MWQSVICCLLA 276 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTH-HHHH--HHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHHHH
Confidence 44556666777777888888888889888899999999999999999999999999999999 5882 3334433 333
Q ss_pred hhhcccccccccceEEEeeeccCCCCCCCCCCCCCCCCCcccCCcchhHHHHHHHHHHHHhccccccccccccccccCCC
Q 007862 97 LAEHFVTKYQGKGMLTVTLTAWLPQLHPPKCDVAKPPFGQCKSANSMQLGVLVMGLGLLSIGTGGIRPCSIPFGVDQFDA 176 (587)
Q Consensus 97 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~~~~~~~ 176 (587)
+......... ...+.+.++...++.+++.+...|....+..|.+|
T Consensus 277 ------------~~~~~~~~~~----------------------~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p- 321 (375)
T 2gfp_A 277 ------------GLLMWIPDWF----------------------GVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP- 321 (375)
T ss_dssp ------------SSSSSHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH-
T ss_pred ------------HHHHHHHhhh----------------------ccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 3332222110 01145667778888999999999999999999987
Q ss_pred CCcccccchhhhhhHHHHHHHHHHHHHhhhhhhcccccchhhHHHHHHH
Q 007862 177 TTDEGVKGINSFFNWYYTTFTVVILITQTVLVYIQDSVSWVIGFGIPTV 225 (587)
Q Consensus 177 ~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~i~~~~~w~~~f~i~~~ 225 (587)
++ |+++++......++|..++|.+.+.+.+..+|...+.+..+
T Consensus 322 ~~------~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~ 364 (375)
T 2gfp_A 322 FL------AGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLM 364 (375)
T ss_dssp HH------HHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred cc------cchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 33 99999999999999999999999999888788887776433
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=97.98 E-value=1.7e-05 Score=86.12 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=93.6
Q ss_pred cccccchhhhhhhhhchhhhhHHHhhhh-hcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceeehHH
Q 007862 383 TVGVISMITIGLWLPFYDTVLVPALRKI-TKHEGGITLLQRIGIGMIFSILSMIVAGLVERGRRASAHLHPMSQVSVFWL 461 (587)
Q Consensus 383 ~~~~i~~i~~~l~~~l~~~l~~~l~~r~-~~r~~~~~~~~~i~~G~i~~~~s~~~~~~~~~~~~~~~~~~~~~~~s~~~l 461 (587)
.+.....++..+..++.+++ .||+ ++ ++.+..+.++.+++.+..... ..+.+.+
T Consensus 58 ~~~~~~~~~~~~~~~~~G~l----~dr~~g~-------r~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~ 112 (524)
T 2xut_A 58 DVFHSFVIGVYFFPLLGGWI----ADRFFGK-------YNTILWLSLIYCVGHAFLAIF--------------EHSVQGF 112 (524)
T ss_dssp HHHHHHHHHHHHTHHHHHHH----HTTSSCS-------HHHHHHHHHHHHHHHHHHHHT--------------SSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHhcc-------hHHHHHHHHHHHHHHHHHHHh--------------cccHHHH
Confidence 33444555555555554444 6665 43 356677777777777666543 1156677
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHhhCCchhhHHHHHH---HHHHHHHHHHHHHHHHHhhhcccccCCCCCCccCCCCCcc
Q 007862 462 APQLILMGFCEAFNIIGQIEFFNKQFPDHMKSIANSL---LFCSFGFASYLSSLLITIVHGVTARHGHPDWLTNDIDAGR 538 (587)
Q Consensus 462 i~~~~l~~~ge~~~~~~~~~~~~~~~P~~~rg~~~gl---~~~~~~lg~~l~~~l~~~v~~~~~~~~~~~w~~~~~~~~~ 538 (587)
....++.+++.+...+...++..+.+|++.|++.++. .+....+|..+++.+.+.+.+.. +
T Consensus 113 ~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~----------------g 176 (524)
T 2xut_A 113 YTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF----------------G 176 (524)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS----------------C
T ss_pred HHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----------------c
Confidence 7788999999999999999999999999999877766 88888889999888777665321 2
Q ss_pred hhHHHHHHHHHHHHHHHHHH
Q 007862 539 LDYFYFLIAGLGGLNIVYFL 558 (587)
Q Consensus 539 ~~~~f~~~~~~~~l~~v~~~ 558 (587)
+...|++.+++.+++.+.++
T Consensus 177 ~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 177 AAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34566666666665555443
Done!